Query 042753
Match_columns 473
No_of_seqs 131 out of 1256
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 15:52:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042753.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042753hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbf_A Flavonoid 3-O-glucosylt 100.0 1E-66 3.4E-71 517.9 35.5 431 5-462 13-453 (454)
2 2vch_A Hydroquinone glucosyltr 100.0 5.7E-62 1.9E-66 492.0 42.2 440 5-463 6-469 (480)
3 2acv_A Triterpene UDP-glucosyl 100.0 5.7E-60 1.9E-64 475.6 42.7 430 5-462 9-462 (463)
4 2pq6_A UDP-glucuronosyl/UDP-gl 100.0 7.9E-61 2.7E-65 485.2 34.5 445 5-463 8-479 (482)
5 2c1x_A UDP-glucose flavonoid 3 100.0 4.1E-59 1.4E-63 468.1 39.1 433 5-463 7-452 (456)
6 2iya_A OLEI, oleandomycin glyc 100.0 1.9E-44 6.6E-49 360.7 33.0 394 5-462 12-421 (424)
7 4amg_A Snogd; transferase, pol 100.0 1E-43 3.5E-48 352.7 29.2 355 5-458 22-396 (400)
8 1iir_A Glycosyltransferase GTF 100.0 2.6E-43 8.8E-48 351.4 28.0 383 6-470 1-407 (415)
9 1rrv_A Glycosyltransferase GTF 100.0 1.6E-42 5.4E-47 345.9 25.0 381 6-468 1-406 (416)
10 3rsc_A CALG2; TDP, enediyne, s 100.0 3.4E-41 1.2E-45 336.2 28.1 386 4-463 19-414 (415)
11 3h4t_A Glycosyltransferase GTF 100.0 3.6E-41 1.2E-45 334.4 23.9 362 6-465 1-385 (404)
12 3ia7_A CALG4; glycosysltransfe 100.0 3.9E-40 1.3E-44 327.0 26.5 385 4-463 3-399 (402)
13 2yjn_A ERYCIII, glycosyltransf 100.0 1.4E-38 5E-43 319.6 29.9 372 4-463 19-436 (441)
14 2iyf_A OLED, oleandomycin glyc 100.0 9.3E-38 3.2E-42 312.9 28.6 383 5-462 7-399 (430)
15 2p6p_A Glycosyl transferase; X 100.0 5.9E-37 2E-41 302.4 29.6 358 6-464 1-381 (384)
16 3oti_A CALG3; calicheamicin, T 100.0 1.6E-35 5.4E-40 293.6 29.3 351 5-460 20-395 (398)
17 4fzr_A SSFS6; structural genom 100.0 3.6E-36 1.2E-40 298.2 23.2 355 4-457 14-395 (398)
18 3tsa_A SPNG, NDP-rhamnosyltran 100.0 2.8E-34 9.5E-39 283.9 24.9 357 6-462 2-388 (391)
19 3otg_A CALG1; calicheamicin, T 100.0 9.4E-32 3.2E-36 267.6 29.2 364 4-463 19-409 (412)
20 3s2u_A UDP-N-acetylglucosamine 100.0 2E-28 6.9E-33 238.9 23.2 312 6-431 3-329 (365)
21 2o6l_A UDP-glucuronosyltransfe 99.9 9.4E-27 3.2E-31 202.0 17.2 164 257-441 5-169 (170)
22 1f0k_A MURG, UDP-N-acetylgluco 99.9 1.2E-20 3.9E-25 184.2 24.3 343 1-464 1-357 (364)
23 2jzc_A UDP-N-acetylglucosamine 99.6 1.4E-15 4.9E-20 135.1 10.2 132 271-422 26-196 (224)
24 3hbm_A UDP-sugar hydrolase; PS 99.6 1.9E-14 6.7E-19 133.2 17.5 116 272-403 156-273 (282)
25 1v4v_A UDP-N-acetylglucosamine 99.4 5.6E-13 1.9E-17 130.2 13.5 159 272-460 197-364 (376)
26 3okp_A GDP-mannose-dependent a 99.4 3E-10 1E-14 111.2 31.5 352 4-466 3-381 (394)
27 3c48_A Predicted glycosyltrans 99.4 3E-10 1E-14 113.1 29.9 372 4-465 19-426 (438)
28 3dzc_A UDP-N-acetylglucosamine 99.4 1.6E-12 5.3E-17 127.8 11.3 334 5-434 25-375 (396)
29 2gek_A Phosphatidylinositol ma 99.3 8E-10 2.8E-14 108.7 27.4 345 4-465 19-384 (406)
30 1vgv_A UDP-N-acetylglucosamine 99.3 1.4E-11 4.9E-16 120.4 14.5 163 272-463 204-375 (384)
31 3ot5_A UDP-N-acetylglucosamine 99.3 3.3E-12 1.1E-16 125.6 7.8 162 272-462 223-393 (403)
32 3fro_A GLGA glycogen synthase; 99.2 1.2E-08 4.1E-13 101.2 30.6 161 275-465 252-431 (439)
33 2r60_A Glycosyl transferase, g 99.2 6E-09 2E-13 105.6 27.9 115 334-464 334-459 (499)
34 2jjm_A Glycosyl transferase, g 99.2 2E-08 6.8E-13 98.4 30.7 353 6-465 16-386 (394)
35 3beo_A UDP-N-acetylglucosamine 99.1 5.9E-10 2E-14 108.5 15.3 161 272-461 204-373 (375)
36 4hwg_A UDP-N-acetylglucosamine 99.1 2.9E-10 9.8E-15 110.8 11.8 349 5-462 9-375 (385)
37 2iw1_A Lipopolysaccharide core 99.1 7.2E-09 2.5E-13 100.6 20.2 145 262-432 185-343 (374)
38 2x6q_A Trehalose-synthase TRET 98.9 2.2E-07 7.4E-12 91.7 24.9 111 334-463 292-413 (416)
39 2iuy_A Avigt4, glycosyltransfe 98.9 1.4E-08 4.8E-13 97.4 14.8 149 276-464 164-335 (342)
40 1rzu_A Glycogen synthase 1; gl 98.7 5.9E-06 2E-10 83.1 25.6 168 274-469 291-480 (485)
41 3s28_A Sucrose synthase 1; gly 98.6 2.9E-06 1E-10 89.7 22.0 113 335-463 640-768 (816)
42 3oy2_A Glycosyltransferase B73 98.6 1E-05 3.5E-10 79.4 23.5 170 273-465 183-391 (413)
43 2vsy_A XCC0866; transferase, g 98.5 6.1E-05 2.1E-09 77.2 29.0 117 335-464 434-559 (568)
44 2qzs_A Glycogen synthase; glyc 98.5 8E-05 2.7E-09 74.7 29.2 169 273-469 291-481 (485)
45 2xci_A KDO-transferase, 3-deox 98.3 0.00016 5.6E-09 69.9 24.7 95 336-440 261-363 (374)
46 2f9f_A First mannosyl transfer 98.2 7E-06 2.4E-10 70.4 10.4 141 274-437 23-174 (177)
47 2hy7_A Glucuronosyltransferase 98.0 0.001 3.5E-08 65.0 22.1 75 334-426 264-353 (406)
48 3tov_A Glycosyl transferase fa 97.7 0.00068 2.3E-08 64.8 15.4 105 4-130 7-115 (349)
49 1psw_A ADP-heptose LPS heptosy 97.6 0.0025 8.5E-08 60.7 17.8 103 6-130 1-106 (348)
50 4gyw_A UDP-N-acetylglucosamine 97.5 0.0017 5.9E-08 68.2 16.5 177 271-464 520-705 (723)
51 3qhp_A Type 1 capsular polysac 97.5 0.00086 2.9E-08 56.3 11.7 128 273-426 1-141 (166)
52 2bfw_A GLGA glycogen synthase; 97.5 0.0023 7.7E-08 55.4 14.6 78 336-426 96-182 (200)
53 3q3e_A HMW1C-like glycosyltran 97.2 0.0033 1.1E-07 63.6 13.5 145 273-432 440-594 (631)
54 3rhz_A GTF3, nucleotide sugar 97.1 0.0012 4.2E-08 62.6 8.6 107 336-458 215-334 (339)
55 2gt1_A Lipopolysaccharide hept 96.0 0.23 7.7E-06 46.5 16.0 136 272-426 177-323 (326)
56 2wqk_A 5'-nucleotidase SURE; S 94.9 0.13 4.5E-06 46.0 9.5 112 5-134 1-128 (251)
57 2phj_A 5'-nucleotidase SURE; S 93.8 0.23 7.7E-06 44.2 8.4 112 5-134 1-128 (251)
58 2x0d_A WSAF; GT4 family, trans 93.7 0.2 6.9E-06 48.7 8.8 84 335-432 295-385 (413)
59 3vue_A GBSS-I, granule-bound s 92.8 1.9 6.5E-05 43.3 14.7 169 273-464 326-511 (536)
60 2ywr_A Phosphoribosylglycinami 89.6 3.2 0.00011 36.0 10.9 104 5-134 1-111 (216)
61 1g5t_A COB(I)alamin adenosyltr 89.6 4.1 0.00014 34.6 11.3 97 5-115 28-131 (196)
62 3av3_A Phosphoribosylglycinami 87.1 5.7 0.0002 34.3 10.8 105 4-134 2-113 (212)
63 3dfu_A Uncharacterized protein 84.9 3.8 0.00013 35.9 8.6 95 1-134 2-99 (232)
64 3ih5_A Electron transfer flavo 84.1 1.5 5.1E-05 38.2 5.6 113 4-134 2-124 (217)
65 3ty2_A 5'-nucleotidase SURE; s 83.9 2.2 7.4E-05 38.0 6.5 43 4-48 10-52 (261)
66 1uqt_A Alpha, alpha-trehalose- 83.8 13 0.00045 36.5 13.0 106 339-464 336-454 (482)
67 4dim_A Phosphoribosylglycinami 83.8 4.4 0.00015 38.8 9.5 87 5-127 7-97 (403)
68 3auf_A Glycinamide ribonucleot 83.5 14 0.00049 32.1 11.7 105 4-134 21-132 (229)
69 3ug7_A Arsenical pump-driving 83.0 13 0.00044 34.8 12.1 47 4-51 24-71 (349)
70 3n7t_A Macrophage binding prot 82.8 2.2 7.5E-05 38.0 6.3 42 1-42 5-57 (247)
71 3lyu_A Putative hydrogenase; t 82.7 12 0.00041 29.7 10.2 110 5-130 18-136 (142)
72 1j9j_A Stationary phase surviV 81.9 3.9 0.00013 36.2 7.4 109 6-133 1-128 (247)
73 2x0d_A WSAF; GT4 family, trans 81.6 0.57 1.9E-05 45.5 2.1 40 4-43 45-89 (413)
74 2bw0_A 10-FTHFDH, 10-formyltet 81.3 6.7 0.00023 36.5 9.2 100 6-135 23-131 (329)
75 1l5x_A SurviVal protein E; str 80.8 5.4 0.00018 36.0 8.1 109 6-134 1-128 (280)
76 3tqr_A Phosphoribosylglycinami 79.4 13 0.00045 32.0 9.8 108 1-134 1-114 (215)
77 3igf_A ALL4481 protein; two-do 79.1 6 0.0002 37.5 8.2 37 5-41 1-38 (374)
78 3dfz_A SIRC, precorrin-2 dehyd 77.9 7.2 0.00024 33.9 7.8 150 266-442 26-185 (223)
79 2iz6_A Molybdenum cofactor car 77.6 25 0.00086 29.1 10.7 101 261-382 35-140 (176)
80 3pdi_B Nitrogenase MOFE cofact 77.4 9.5 0.00032 37.3 9.4 87 5-131 313-399 (458)
81 3zq6_A Putative arsenical pump 77.1 9.5 0.00033 35.3 9.0 39 5-43 13-52 (324)
82 4egb_A DTDP-glucose 4,6-dehydr 77.0 12 0.00042 34.5 9.9 35 3-41 22-58 (346)
83 3rfo_A Methionyl-tRNA formyltr 76.5 11 0.00037 34.8 8.9 101 4-135 3-114 (317)
84 3t5t_A Putative glycosyltransf 76.3 12 0.00042 36.8 9.8 111 336-464 353-473 (496)
85 4dzz_A Plasmid partitioning pr 75.6 13 0.00045 31.2 8.9 41 5-45 1-42 (206)
86 3iqw_A Tail-anchored protein t 75.4 22 0.00075 33.0 10.9 41 5-45 15-56 (334)
87 3lrx_A Putative hydrogenase; a 75.3 31 0.001 27.9 10.6 108 5-128 23-139 (158)
88 2v4n_A Multifunctional protein 73.8 6.6 0.00022 34.9 6.4 109 6-133 2-126 (254)
89 2ejb_A Probable aromatic acid 73.6 3.3 0.00011 35.0 4.3 45 5-50 1-45 (189)
90 3vot_A L-amino acid ligase, BL 73.5 13 0.00044 35.8 9.2 99 1-128 1-101 (425)
91 2e6c_A 5'-nucleotidase SURE; S 73.3 11 0.00037 33.3 7.7 113 6-133 1-129 (244)
92 3nb0_A Glycogen [starch] synth 72.8 26 0.0009 36.0 11.2 44 337-382 495-551 (725)
93 3qxc_A Dethiobiotin synthetase 72.6 9.5 0.00033 33.6 7.3 36 5-40 20-57 (242)
94 1kjq_A GART 2, phosphoribosylg 72.6 29 0.001 32.7 11.5 39 1-44 7-45 (391)
95 3vue_A GBSS-I, granule-bound s 71.9 4 0.00014 40.9 5.2 38 5-42 9-52 (536)
96 3zqu_A Probable aromatic acid 71.9 3.4 0.00012 35.6 4.0 46 4-50 3-48 (209)
97 3l7i_A Teichoic acid biosynthe 71.9 3.6 0.00012 43.0 5.1 115 339-464 603-721 (729)
98 3fgn_A Dethiobiotin synthetase 71.8 22 0.00075 31.4 9.5 124 5-136 26-168 (251)
99 3qjg_A Epidermin biosynthesis 70.9 4.8 0.00016 33.6 4.6 43 6-49 6-48 (175)
100 3pdi_A Nitrogenase MOFE cofact 70.6 9.8 0.00034 37.5 7.6 90 5-131 332-425 (483)
101 1kjn_A MTH0777; hypotethical p 70.4 3.9 0.00013 32.6 3.7 51 1-51 1-54 (157)
102 2dwc_A PH0318, 433AA long hypo 69.9 37 0.0013 32.5 11.6 90 2-127 16-107 (433)
103 1jkx_A GART;, phosphoribosylgl 69.9 51 0.0017 28.2 11.1 103 6-134 1-110 (212)
104 2c5a_A GDP-mannose-3', 5'-epim 69.5 49 0.0017 31.0 12.2 37 3-43 27-63 (379)
105 2hy5_B Intracellular sulfur ox 69.2 6.9 0.00024 31.0 5.0 47 1-47 1-50 (136)
106 3u7q_A Nitrogenase molybdenum- 69.0 17 0.00058 35.8 8.9 93 5-131 348-441 (492)
107 3lqk_A Dipicolinate synthase s 66.9 7.1 0.00024 33.3 5.0 48 1-48 3-50 (201)
108 3enk_A UDP-glucose 4-epimerase 66.2 28 0.00096 31.9 9.6 37 2-42 2-38 (341)
109 3q0i_A Methionyl-tRNA formyltr 66.1 46 0.0016 30.5 10.7 100 5-135 7-117 (318)
110 2c20_A UDP-glucose 4-epimerase 65.8 49 0.0017 30.0 11.1 34 5-42 1-34 (330)
111 2vqe_B 30S ribosomal protein S 65.7 71 0.0024 28.2 11.6 32 104-135 158-191 (256)
112 3u7q_B Nitrogenase molybdenum- 63.7 24 0.00083 35.0 8.8 94 5-131 364-469 (523)
113 1g63_A Epidermin modifying enz 62.3 5.9 0.0002 33.2 3.5 44 5-49 2-45 (181)
114 3ax6_A Phosphoribosylaminoimid 62.2 54 0.0019 30.7 10.9 35 5-44 1-35 (380)
115 3da8_A Probable 5'-phosphoribo 62.1 32 0.0011 29.6 8.3 104 5-134 12-120 (215)
116 1meo_A Phosophoribosylglycinam 61.9 54 0.0018 28.0 9.7 103 6-134 1-110 (209)
117 2lpm_A Two-component response 61.9 6.4 0.00022 30.6 3.5 36 95-132 46-86 (123)
118 1ccw_A Protein (glutamate muta 61.6 9.8 0.00033 30.1 4.6 42 6-47 4-45 (137)
119 1p3y_1 MRSD protein; flavoprot 61.6 4.4 0.00015 34.4 2.6 43 5-48 8-50 (194)
120 3tqq_A Methionyl-tRNA formyltr 61.0 33 0.0011 31.5 8.7 99 6-135 3-112 (314)
121 1sbz_A Probable aromatic acid 60.7 6.3 0.00021 33.5 3.4 43 6-49 1-44 (197)
122 3mcu_A Dipicolinate synthase, 60.5 9.4 0.00032 32.7 4.5 44 1-45 1-45 (207)
123 3kcq_A Phosphoribosylglycinami 59.9 42 0.0014 28.8 8.6 101 3-134 6-113 (215)
124 2yvq_A Carbamoyl-phosphate syn 59.7 7.6 0.00026 31.1 3.6 96 9-130 27-130 (143)
125 1y80_A Predicted cobalamin bin 59.7 13 0.00043 31.9 5.4 44 5-48 88-131 (210)
126 2b8t_A Thymidine kinase; deoxy 59.1 59 0.002 28.0 9.5 39 6-44 12-51 (223)
127 2pn1_A Carbamoylphosphate synt 58.4 22 0.00077 32.6 7.3 32 6-43 5-38 (331)
128 2i2x_B MTAC, methyltransferase 58.3 16 0.00053 32.6 5.8 43 5-47 123-165 (258)
129 3tov_A Glycosyl transferase fa 57.6 38 0.0013 31.5 8.7 100 6-134 186-289 (349)
130 3to5_A CHEY homolog; alpha(5)b 57.1 12 0.00041 29.5 4.4 39 96-136 51-98 (134)
131 1psw_A ADP-heptose LPS heptosy 57.0 73 0.0025 29.1 10.7 102 6-134 181-289 (348)
132 2yxb_A Coenzyme B12-dependent 56.9 11 0.00037 30.8 4.2 43 5-47 18-60 (161)
133 1kyq_A Met8P, siroheme biosynt 56.7 38 0.0013 30.3 8.1 151 271-443 12-210 (274)
134 3o1l_A Formyltetrahydrofolate 56.7 1.1E+02 0.0039 27.7 11.3 104 4-134 104-212 (302)
135 3mjf_A Phosphoribosylamine--gl 56.3 14 0.00049 35.7 5.6 92 4-130 2-96 (431)
136 3gl9_A Response regulator; bet 54.9 18 0.00062 27.2 5.1 38 96-135 40-86 (122)
137 3bbn_B Ribosomal protein S2; s 54.4 51 0.0018 28.6 8.2 31 104-134 157-189 (231)
138 1qzu_A Hypothetical protein MD 54.2 12 0.00042 32.0 4.2 45 5-50 19-64 (206)
139 1mvl_A PPC decarboxylase athal 54.1 16 0.00054 31.4 4.9 44 5-50 19-62 (209)
140 3rg8_A Phosphoribosylaminoimid 54.0 86 0.0029 25.3 9.0 137 274-442 3-148 (159)
141 3dm5_A SRP54, signal recogniti 53.7 28 0.00095 33.7 7.1 40 7-46 102-141 (443)
142 2bln_A Protein YFBG; transfera 53.0 29 0.00099 31.7 6.8 95 6-135 1-107 (305)
143 3m2p_A UDP-N-acetylglucosamine 52.9 1.3E+02 0.0043 26.9 11.5 34 5-42 2-35 (311)
144 1pjq_A CYSG, siroheme synthase 52.9 25 0.00084 34.3 6.7 145 271-442 11-167 (457)
145 2qs7_A Uncharacterized protein 52.8 17 0.00057 29.1 4.6 50 1-50 2-53 (144)
146 4b4o_A Epimerase family protei 52.6 12 0.00042 33.7 4.3 34 6-43 1-34 (298)
147 3ezx_A MMCP 1, monomethylamine 52.2 22 0.00075 30.6 5.6 44 5-48 92-135 (215)
148 1jx7_A Hypothetical protein YC 52.0 17 0.00059 27.4 4.5 44 5-48 1-49 (117)
149 3cio_A ETK, tyrosine-protein k 52.0 39 0.0013 30.7 7.6 38 6-43 104-143 (299)
150 1qgu_B Protein (nitrogenase mo 52.0 80 0.0027 31.2 10.4 94 5-131 360-465 (519)
151 3ouz_A Biotin carboxylase; str 50.9 27 0.00093 33.7 6.7 33 5-42 6-38 (446)
152 3eag_A UDP-N-acetylmuramate:L- 50.7 13 0.00046 34.3 4.2 35 4-42 3-37 (326)
153 3gi1_A LBP, laminin-binding pr 50.4 78 0.0027 28.4 9.3 80 33-133 178-259 (286)
154 2q5c_A NTRC family transcripti 50.0 40 0.0014 28.4 6.8 35 97-136 137-171 (196)
155 2o6l_A UDP-glucuronosyltransfe 49.8 73 0.0025 25.5 8.4 89 7-132 22-113 (170)
156 1fmt_A Methionyl-tRNA FMet for 49.0 44 0.0015 30.6 7.4 100 5-135 3-113 (314)
157 3i6i_A Putative leucoanthocyan 48.9 1.5E+02 0.0053 26.9 11.5 95 6-131 11-117 (346)
158 1xgk_A Nitrogen metabolite rep 48.0 1.7E+02 0.0057 26.9 11.7 36 5-44 5-40 (352)
159 1yt5_A Inorganic polyphosphate 47.6 11 0.00039 33.4 3.1 53 352-426 42-97 (258)
160 3bgw_A DNAB-like replicative h 47.5 76 0.0026 30.6 9.2 42 5-46 197-238 (444)
161 3kkl_A Probable chaperone prot 47.4 31 0.0011 30.3 5.9 39 5-43 3-52 (244)
162 3ors_A N5-carboxyaminoimidazol 47.4 1.1E+02 0.0039 24.8 8.9 138 273-442 3-153 (163)
163 1p9o_A Phosphopantothenoylcyst 47.4 12 0.00041 34.3 3.2 40 5-44 36-90 (313)
164 3t6k_A Response regulator rece 46.9 29 0.00098 26.7 5.2 38 96-135 42-88 (136)
165 1u0t_A Inorganic polyphosphate 46.8 22 0.00075 32.5 5.0 57 348-426 72-132 (307)
166 2wm3_A NMRA-like family domain 46.2 1.3E+02 0.0045 26.6 10.3 36 5-44 5-41 (299)
167 3f6p_A Transcriptional regulat 45.7 33 0.0011 25.5 5.3 40 95-136 39-84 (120)
168 2i2c_A Probable inorganic poly 45.0 14 0.00046 33.3 3.2 51 356-426 38-94 (272)
169 3f6r_A Flavodoxin; FMN binding 44.9 28 0.00094 27.5 4.8 39 5-43 1-40 (148)
170 1rw7_A YDR533CP; alpha-beta sa 44.9 38 0.0013 29.6 6.1 39 5-43 3-52 (243)
171 1f0y_A HCDH, L-3-hydroxyacyl-C 44.8 12 0.00041 34.1 2.9 37 1-42 11-47 (302)
172 2gk4_A Conserved hypothetical 44.8 35 0.0012 29.7 5.7 23 21-43 31-53 (232)
173 3mc3_A DSRE/DSRF-like family p 44.4 36 0.0012 26.6 5.3 44 5-48 15-61 (134)
174 3ro0_A Pyrrolidone-carboxylate 44.4 22 0.00074 30.8 4.2 28 5-32 2-31 (223)
175 4ds3_A Phosphoribosylglycinami 44.3 1.1E+02 0.0037 26.1 8.6 108 2-134 2-117 (209)
176 3dhn_A NAD-dependent epimerase 44.3 18 0.00062 30.9 3.9 35 4-42 3-37 (227)
177 2vpq_A Acetyl-COA carboxylase; 43.9 35 0.0012 32.9 6.3 33 5-42 1-33 (451)
178 2an1_A Putative kinase; struct 42.7 21 0.00073 32.3 4.2 40 1-40 1-41 (292)
179 2o1e_A YCDH; alpha-beta protei 42.6 1.2E+02 0.0042 27.5 9.4 83 29-132 185-269 (312)
180 3m6m_D Sensory/regulatory prot 42.5 27 0.00092 27.1 4.4 38 96-135 52-100 (143)
181 2w70_A Biotin carboxylase; lig 42.4 43 0.0015 32.3 6.7 33 5-42 2-34 (449)
182 2zts_A Putative uncharacterize 42.3 1.3E+02 0.0044 25.6 9.4 127 5-134 30-181 (251)
183 2d1p_B TUSC, hypothetical UPF0 41.7 36 0.0012 25.9 4.8 41 5-45 1-44 (119)
184 1lss_A TRK system potassium up 41.7 33 0.0011 26.4 4.8 33 5-42 4-36 (140)
185 1xp8_A RECA protein, recombina 41.5 77 0.0026 29.7 8.0 41 5-45 74-114 (366)
186 3lac_A Pyrrolidone-carboxylate 41.3 21 0.00071 30.7 3.6 27 5-31 1-29 (215)
187 3p9x_A Phosphoribosylglycinami 41.1 1.7E+02 0.0057 24.9 12.1 107 5-134 2-112 (211)
188 2zki_A 199AA long hypothetical 41.0 25 0.00087 29.4 4.2 39 4-43 3-42 (199)
189 1rpn_A GDP-mannose 4,6-dehydra 41.0 57 0.002 29.6 7.0 35 5-43 14-48 (335)
190 2q6t_A DNAB replication FORK h 40.7 85 0.0029 30.2 8.4 43 5-47 200-243 (444)
191 2p90_A Hypothetical protein CG 40.5 1.3E+02 0.0044 27.6 9.1 39 272-311 101-140 (319)
192 3hn2_A 2-dehydropantoate 2-red 40.1 33 0.0011 31.2 5.2 40 6-51 3-42 (312)
193 3qvl_A Putative hydantoin race 39.7 1.7E+02 0.0057 25.5 9.5 94 6-131 2-97 (245)
194 1pno_A NAD(P) transhydrogenase 39.7 17 0.00059 29.5 2.6 41 4-44 22-65 (180)
195 3obb_A Probable 3-hydroxyisobu 39.7 27 0.00092 31.8 4.4 33 4-41 2-34 (300)
196 3hr8_A Protein RECA; alpha and 39.6 1.3E+02 0.0044 28.0 9.1 39 6-44 62-100 (356)
197 2r8r_A Sensor protein; KDPD, P 39.5 41 0.0014 29.2 5.2 39 5-43 6-44 (228)
198 1o97_C Electron transferring f 39.5 35 0.0012 30.4 5.0 43 90-134 100-148 (264)
199 3q9l_A Septum site-determining 39.0 29 0.001 30.3 4.5 39 5-43 1-41 (260)
200 1dbw_A Transcriptional regulat 38.8 49 0.0017 24.7 5.3 40 95-136 40-86 (126)
201 2an1_A Putative kinase; struct 38.6 24 0.00084 31.8 3.9 57 348-426 60-120 (292)
202 2pv7_A T-protein [includes: ch 38.6 1.1E+02 0.0039 27.4 8.5 35 3-42 19-54 (298)
203 4ina_A Saccharopine dehydrogen 38.5 1.6E+02 0.0054 27.9 9.9 33 5-42 1-36 (405)
204 3llv_A Exopolyphosphatase-rela 38.3 16 0.00055 28.6 2.4 33 5-42 6-38 (141)
205 2dzd_A Pyruvate carboxylase; b 38.2 87 0.003 30.2 8.1 103 1-130 1-109 (461)
206 2yrx_A Phosphoribosylglycinami 38.1 1.5E+02 0.0051 28.4 9.8 88 5-130 21-112 (451)
207 2r6a_A DNAB helicase, replicat 37.9 2.2E+02 0.0076 27.3 11.0 43 5-47 203-246 (454)
208 3obi_A Formyltetrahydrofolate 37.8 2.2E+02 0.0076 25.5 10.1 104 4-134 88-197 (288)
209 1g3q_A MIND ATPase, cell divis 37.7 34 0.0011 29.4 4.6 39 5-43 1-41 (237)
210 3ius_A Uncharacterized conserv 37.4 60 0.0021 28.7 6.4 34 5-43 5-38 (286)
211 3c3m_A Response regulator rece 37.2 47 0.0016 25.3 5.0 37 96-134 41-86 (138)
212 1efv_B Electron transfer flavo 37.2 40 0.0014 29.8 4.9 43 90-134 104-152 (255)
213 4hps_A Pyrrolidone-carboxylate 37.1 36 0.0012 29.5 4.5 29 4-32 22-52 (228)
214 3gem_A Short chain dehydrogena 37.1 1.2E+02 0.0042 26.4 8.4 35 7-44 28-62 (260)
215 2qsb_A UPF0147 protein TA0600; 36.9 1.1E+02 0.0039 21.8 7.1 52 417-471 17-71 (89)
216 2w36_A Endonuclease V; hypoxan 36.9 24 0.00081 30.6 3.2 41 92-132 91-138 (225)
217 3afo_A NADH kinase POS5; alpha 36.8 22 0.00074 33.8 3.3 61 344-426 107-172 (388)
218 1gsa_A Glutathione synthetase; 36.7 29 0.00099 31.3 4.2 38 5-42 1-41 (316)
219 1q74_A 1D-MYO-inosityl 2-aceta 36.5 38 0.0013 30.9 4.8 20 89-110 116-135 (303)
220 1b93_A Protein (methylglyoxal 36.4 67 0.0023 25.8 5.6 97 3-130 9-118 (152)
221 3cx3_A Lipoprotein; zinc-bindi 36.3 1.1E+02 0.0039 27.2 8.0 83 29-132 172-256 (284)
222 1z45_A GAL10 bifunctional prot 36.2 2.4E+02 0.0081 28.8 11.5 34 5-42 11-44 (699)
223 3c24_A Putative oxidoreductase 36.1 27 0.00093 31.3 3.8 35 2-41 8-43 (286)
224 1qyd_A Pinoresinol-lariciresin 35.8 34 0.0012 30.8 4.5 36 4-43 3-38 (313)
225 3gt7_A Sensor protein; structu 35.8 51 0.0017 25.8 5.1 39 95-135 44-91 (154)
226 3nrb_A Formyltetrahydrofolate 35.5 2.4E+02 0.0083 25.2 10.1 107 4-134 87-196 (287)
227 1pq4_A Periplasmic binding pro 35.4 1.9E+02 0.0064 25.9 9.3 78 34-134 190-269 (291)
228 2qk4_A Trifunctional purine bi 35.0 1.1E+02 0.0038 29.4 8.3 32 6-42 25-57 (452)
229 1efp_B ETF, protein (electron 34.9 40 0.0014 29.8 4.6 42 91-134 102-149 (252)
230 2pju_A Propionate catabolism o 34.7 35 0.0012 29.6 4.0 28 352-382 64-91 (225)
231 1cp2_A CP2, nitrogenase iron p 34.7 39 0.0013 29.8 4.6 39 5-43 1-39 (269)
232 3f2v_A General stress protein 34.3 25 0.00085 29.6 3.0 36 5-40 1-37 (192)
233 3oti_A CALG3; calicheamicin, T 34.2 1.5E+02 0.0051 27.5 9.0 90 6-131 232-325 (398)
234 2a33_A Hypothetical protein; s 34.1 1.3E+02 0.0045 25.7 7.6 103 261-381 35-147 (215)
235 2qzg_A Conserved uncharacteriz 34.0 1.3E+02 0.0045 21.7 6.7 51 418-471 22-75 (94)
236 3ic5_A Putative saccharopine d 33.9 36 0.0012 25.1 3.7 97 4-136 4-104 (118)
237 3i83_A 2-dehydropantoate 2-red 33.9 46 0.0016 30.4 5.0 40 6-51 3-42 (320)
238 2qyt_A 2-dehydropantoate 2-red 33.9 18 0.00061 33.0 2.2 36 1-41 4-45 (317)
239 1e2b_A Enzyme IIB-cellobiose; 33.7 78 0.0027 23.5 5.4 38 5-42 3-40 (106)
240 3a10_A Response regulator; pho 33.7 74 0.0025 23.0 5.5 37 96-134 39-82 (116)
241 3qsg_A NAD-binding phosphogluc 33.6 19 0.00067 32.9 2.4 36 2-42 21-57 (312)
242 1zgz_A Torcad operon transcrip 33.3 55 0.0019 24.1 4.7 39 95-135 39-83 (122)
243 3eod_A Protein HNR; response r 33.3 61 0.0021 24.2 5.0 39 96-136 45-90 (130)
244 2xj4_A MIPZ; replication, cell 33.1 42 0.0014 30.0 4.6 39 5-43 3-43 (286)
245 4b79_A PA4098, probable short- 33.0 2E+02 0.0068 25.0 8.8 34 6-42 11-44 (242)
246 2rjn_A Response regulator rece 32.9 56 0.0019 25.4 4.9 40 95-136 44-90 (154)
247 3goc_A Endonuclease V; alpha-b 32.8 65 0.0022 28.0 5.3 41 92-132 95-142 (237)
248 2xw6_A MGS, methylglyoxal synt 32.7 46 0.0016 26.1 4.0 97 4-131 2-111 (134)
249 4e5s_A MCCFLIKE protein (BA_56 32.3 62 0.0021 29.9 5.6 28 285-312 61-88 (331)
250 1tmy_A CHEY protein, TMY; chem 32.2 57 0.0019 23.9 4.6 38 97-136 42-86 (120)
251 2q5c_A NTRC family transcripti 32.2 29 0.00099 29.3 3.1 30 351-383 51-80 (196)
252 3h1g_A Chemotaxis protein CHEY 32.2 83 0.0028 23.5 5.7 32 104-135 51-91 (129)
253 3nhm_A Response regulator; pro 32.0 75 0.0026 23.7 5.4 37 96-134 41-86 (133)
254 3gpi_A NAD-dependent epimerase 32.0 47 0.0016 29.5 4.7 33 5-42 3-35 (286)
255 1hyq_A MIND, cell division inh 32.0 44 0.0015 29.3 4.5 39 5-43 1-41 (263)
256 2bru_C NAD(P) transhydrogenase 31.9 20 0.00069 29.3 1.8 39 5-43 30-71 (186)
257 3ot1_A 4-methyl-5(B-hydroxyeth 31.8 80 0.0027 26.7 5.9 37 5-42 9-45 (208)
258 1ydh_A AT5G11950; structural g 31.8 81 0.0028 27.0 5.8 102 261-381 31-143 (216)
259 2a5l_A Trp repressor binding p 31.7 57 0.0019 27.1 4.9 38 5-42 5-43 (200)
260 1ydg_A Trp repressor binding p 31.6 59 0.002 27.4 5.1 40 3-42 4-44 (211)
261 1z7e_A Protein aRNA; rossmann 31.6 55 0.0019 33.5 5.6 96 6-136 1-108 (660)
262 3f5d_A Protein YDEA; unknow pr 31.5 46 0.0016 28.2 4.3 38 5-43 3-41 (206)
263 3n0v_A Formyltetrahydrofolate 31.4 2.8E+02 0.0097 24.7 10.7 103 5-134 90-197 (286)
264 4dll_A 2-hydroxy-3-oxopropiona 31.3 51 0.0017 30.1 4.9 34 4-42 30-63 (320)
265 4ffl_A PYLC; amino acid, biosy 31.3 2.7E+02 0.0092 25.5 10.1 34 5-43 1-34 (363)
266 3grc_A Sensor protein, kinase; 31.1 66 0.0022 24.4 5.0 38 96-135 44-90 (140)
267 1u94_A RECA protein, recombina 31.1 1.5E+02 0.005 27.6 8.0 40 5-44 63-102 (356)
268 3kjh_A CO dehydrogenase/acetyl 31.0 30 0.001 29.9 3.1 38 6-43 1-38 (254)
269 3doj_A AT3G25530, dehydrogenas 31.0 35 0.0012 31.1 3.6 34 4-42 20-53 (310)
270 1u0t_A Inorganic polyphosphate 31.0 42 0.0014 30.6 4.2 39 4-42 3-42 (307)
271 4gi5_A Quinone reductase; prot 30.8 77 0.0026 28.4 5.8 35 6-40 23-60 (280)
272 3c1o_A Eugenol synthase; pheny 30.7 54 0.0018 29.6 5.0 36 4-43 3-38 (321)
273 4dgk_A Phytoene dehydrogenase; 30.7 18 0.00063 35.4 1.8 33 5-42 1-33 (501)
274 2lnd_A De novo designed protei 30.6 41 0.0014 23.3 3.0 49 372-424 50-100 (112)
275 1rcu_A Conserved hypothetical 30.6 2.4E+02 0.0081 23.6 9.5 97 260-380 47-149 (195)
276 4e7p_A Response regulator; DNA 30.5 68 0.0023 24.8 5.0 42 93-136 57-105 (150)
277 1oi4_A Hypothetical protein YH 30.4 1.1E+02 0.0038 25.3 6.5 40 3-43 21-60 (193)
278 1xhf_A DYE resistance, aerobic 30.4 73 0.0025 23.4 5.0 38 96-135 41-84 (123)
279 3b2n_A Uncharacterized protein 30.4 55 0.0019 24.7 4.3 39 95-135 42-87 (133)
280 1y56_B Sarcosine oxidase; dehy 30.4 26 0.0009 32.7 2.8 38 1-43 1-38 (382)
281 2afh_E Nitrogenase iron protei 30.4 51 0.0017 29.5 4.6 39 5-43 2-40 (289)
282 3sc4_A Short chain dehydrogena 30.1 2.2E+02 0.0074 25.1 8.9 35 6-43 9-43 (285)
283 2qxy_A Response regulator; reg 30.1 64 0.0022 24.6 4.7 38 95-135 41-85 (142)
284 2xcl_A Phosphoribosylamine--gl 30.0 1.4E+02 0.0048 28.3 8.0 87 6-130 1-91 (422)
285 3lou_A Formyltetrahydrofolate 29.9 3E+02 0.01 24.6 11.7 104 4-134 94-202 (292)
286 4hv4_A UDP-N-acetylmuramate--L 29.8 55 0.0019 32.1 5.1 34 3-40 20-53 (494)
287 3l49_A ABC sugar (ribose) tran 29.8 2.7E+02 0.0094 24.1 10.2 42 1-42 1-44 (291)
288 3k96_A Glycerol-3-phosphate de 29.8 29 0.00099 32.5 2.9 35 3-42 27-61 (356)
289 1id1_A Putative potassium chan 29.8 30 0.001 27.5 2.7 32 6-42 4-35 (153)
290 2z04_A Phosphoribosylaminoimid 29.6 56 0.0019 30.3 5.0 35 5-44 1-35 (365)
291 3kht_A Response regulator; PSI 29.5 90 0.0031 23.8 5.5 39 95-135 44-91 (144)
292 2a9o_A Response regulator; ess 29.4 71 0.0024 23.2 4.8 38 97-136 40-83 (120)
293 3oig_A Enoyl-[acyl-carrier-pro 29.4 2.7E+02 0.0094 23.9 9.6 34 6-42 7-42 (266)
294 3g1w_A Sugar ABC transporter; 29.4 2.9E+02 0.0098 24.2 9.7 85 2-131 1-92 (305)
295 3b6i_A Flavoprotein WRBA; flav 29.4 62 0.0021 26.8 4.8 39 5-43 1-41 (198)
296 2ip4_A PURD, phosphoribosylami 29.3 2E+02 0.0067 27.1 8.9 86 6-130 1-90 (417)
297 2qzj_A Two-component response 29.2 64 0.0022 24.5 4.5 38 96-135 42-85 (136)
298 2gas_A Isoflavone reductase; N 29.1 49 0.0017 29.6 4.3 35 5-43 2-36 (307)
299 3hv2_A Response regulator/HD d 28.9 64 0.0022 25.1 4.6 39 95-135 51-96 (153)
300 2pl1_A Transcriptional regulat 28.9 92 0.0032 22.6 5.4 39 95-135 37-82 (121)
301 1vi6_A 30S ribosomal protein S 28.9 71 0.0024 27.2 4.9 32 104-135 115-148 (208)
302 2xws_A Sirohydrochlorin cobalt 28.5 45 0.0015 25.8 3.4 39 273-311 4-44 (133)
303 1c0p_A D-amino acid oxidase; a 28.4 41 0.0014 31.1 3.8 37 1-42 2-38 (363)
304 1p6q_A CHEY2; chemotaxis, sign 28.3 71 0.0024 23.7 4.6 37 96-134 45-90 (129)
305 2g1u_A Hypothetical protein TM 28.3 48 0.0017 26.3 3.7 33 5-42 19-51 (155)
306 3orf_A Dihydropteridine reduct 28.3 61 0.0021 28.2 4.7 37 4-43 20-56 (251)
307 2ew2_A 2-dehydropantoate 2-red 28.2 34 0.0012 30.9 3.1 33 5-42 3-35 (316)
308 1srr_A SPO0F, sporulation resp 28.1 57 0.002 24.1 4.0 36 98-135 43-85 (124)
309 1mb3_A Cell division response 28.1 61 0.0021 23.9 4.1 36 97-134 40-84 (124)
310 3ghy_A Ketopantoate reductase 28.0 27 0.00092 32.3 2.3 33 5-42 3-35 (335)
311 3end_A Light-independent proto 28.0 62 0.0021 29.2 4.8 39 5-43 41-79 (307)
312 3cu5_A Two component transcrip 28.0 72 0.0025 24.4 4.7 37 96-134 43-86 (141)
313 3crn_A Response regulator rece 27.9 80 0.0028 23.7 4.9 38 96-135 41-85 (132)
314 2a33_A Hypothetical protein; s 27.7 82 0.0028 27.0 5.2 40 3-42 11-54 (215)
315 1vmd_A MGS, methylglyoxal synt 27.7 74 0.0025 26.3 4.6 85 17-130 37-134 (178)
316 2h31_A Multifunctional protein 27.6 2E+02 0.0067 27.5 8.2 139 272-442 264-411 (425)
317 2ph1_A Nucleotide-binding prot 27.5 46 0.0016 29.2 3.8 42 4-45 16-59 (262)
318 1wcv_1 SOJ, segregation protei 27.5 39 0.0013 29.6 3.3 44 1-44 1-46 (257)
319 1mio_B Nitrogenase molybdenum 27.4 49 0.0017 32.1 4.2 34 93-131 376-409 (458)
320 3lp8_A Phosphoribosylamine-gly 27.4 2.1E+02 0.0072 27.4 8.7 90 3-130 19-112 (442)
321 2qx0_A 7,8-dihydro-6-hydroxyme 27.4 1E+02 0.0034 25.0 5.3 29 275-303 3-31 (159)
322 3sbx_A Putative uncharacterize 27.4 2.3E+02 0.0079 23.6 7.8 119 261-397 34-164 (189)
323 3of5_A Dethiobiotin synthetase 27.2 73 0.0025 27.4 4.9 37 4-40 3-40 (228)
324 2yw2_A Phosphoribosylamine--gl 27.2 2.1E+02 0.0071 27.0 8.7 32 6-42 1-33 (424)
325 1hjr_A Holliday junction resol 27.1 70 0.0024 25.9 4.4 46 89-136 46-106 (158)
326 1f9y_A HPPK, protein (6-hydrox 27.1 75 0.0026 25.7 4.5 28 275-302 2-29 (158)
327 3hwr_A 2-dehydropantoate 2-red 27.0 33 0.0011 31.4 2.7 42 5-51 19-60 (318)
328 3rqi_A Response regulator prot 27.0 56 0.0019 26.6 4.0 40 95-136 44-90 (184)
329 4hn9_A Iron complex transport 27.0 77 0.0026 29.1 5.3 35 98-134 112-146 (335)
330 1ulz_A Pyruvate carboxylase N- 27.0 88 0.003 30.0 6.0 97 5-130 2-103 (451)
331 3cg0_A Response regulator rece 26.9 71 0.0024 24.1 4.4 39 96-136 48-93 (140)
332 3otg_A CALG1; calicheamicin, T 26.8 2.9E+02 0.0099 25.5 9.7 90 6-131 242-334 (412)
333 3dii_A Short-chain dehydrogena 26.8 58 0.002 28.2 4.3 35 5-42 1-35 (247)
334 3cz5_A Two-component response 26.8 1.1E+02 0.0036 23.7 5.6 38 96-135 45-89 (153)
335 1vhq_A Enhancing lycopene bios 26.8 1.1E+02 0.0037 26.3 6.0 38 5-43 6-48 (232)
336 2r6j_A Eugenol synthase 1; phe 26.6 69 0.0024 28.8 4.9 33 7-43 13-45 (318)
337 4g81_D Putative hexonate dehyd 26.6 2.4E+02 0.008 24.7 8.2 33 6-41 9-41 (255)
338 3uf0_A Short-chain dehydrogena 26.6 2.4E+02 0.0082 24.7 8.4 34 6-42 31-64 (273)
339 4grd_A N5-CAIR mutase, phospho 26.4 2.7E+02 0.0091 22.8 10.6 141 272-443 11-163 (173)
340 3l4e_A Uncharacterized peptida 26.4 1.3E+02 0.0043 25.5 6.2 47 261-307 16-62 (206)
341 2qr3_A Two-component system re 26.3 84 0.0029 23.7 4.8 39 96-136 41-91 (140)
342 2q8p_A Iron-regulated surface 26.3 48 0.0017 29.0 3.7 34 98-133 56-90 (260)
343 3l3b_A ES1 family protein; ssg 26.3 1.2E+02 0.0041 26.4 6.1 37 6-43 24-65 (242)
344 3r6w_A FMN-dependent NADH-azor 26.3 61 0.0021 27.4 4.2 38 5-42 1-44 (212)
345 2ehd_A Oxidoreductase, oxidore 26.3 82 0.0028 26.8 5.1 35 5-42 4-38 (234)
346 1jbe_A Chemotaxis protein CHEY 26.2 1E+02 0.0034 22.8 5.1 38 96-135 43-89 (128)
347 1bg6_A N-(1-D-carboxylethyl)-L 26.2 40 0.0014 31.2 3.2 33 5-42 4-36 (359)
348 1fy2_A Aspartyl dipeptidase; s 26.1 1.7E+02 0.0058 25.1 7.1 45 260-306 21-65 (229)
349 3sty_A Methylketone synthase 1 26.1 62 0.0021 27.6 4.3 37 6-42 12-48 (267)
350 2h78_A Hibadh, 3-hydroxyisobut 26.1 47 0.0016 29.9 3.6 34 4-42 2-35 (302)
351 3ip0_A 2-amino-4-hydroxy-6-hyd 26.0 80 0.0027 25.5 4.5 29 275-303 2-30 (158)
352 4h1h_A LMO1638 protein; MCCF-l 26.0 88 0.003 28.8 5.4 27 286-312 62-88 (327)
353 1wrd_A TOM1, target of MYB pro 25.9 1.5E+02 0.005 22.0 5.6 34 410-448 3-36 (103)
354 3rht_A (gatase1)-like protein; 25.9 39 0.0013 30.0 2.9 37 4-44 3-41 (259)
355 1hdo_A Biliverdin IX beta redu 25.9 83 0.0029 25.8 5.0 33 6-42 4-36 (206)
356 2hy5_A Putative sulfurtransfer 25.8 98 0.0033 23.8 5.0 40 7-46 2-45 (130)
357 3i42_A Response regulator rece 25.8 72 0.0025 23.6 4.2 38 95-134 40-86 (127)
358 3io5_A Recombination and repai 25.7 2.7E+02 0.0091 25.6 8.4 41 3-44 27-69 (333)
359 4fs3_A Enoyl-[acyl-carrier-pro 25.7 2.8E+02 0.0095 24.0 8.6 35 5-42 5-41 (256)
360 2hna_A Protein MIOC, flavodoxi 25.7 83 0.0028 24.6 4.6 36 5-40 1-37 (147)
361 3icc_A Putative 3-oxoacyl-(acy 25.6 3.1E+02 0.011 23.3 9.1 35 6-43 7-41 (255)
362 3cmw_A Protein RECA, recombina 25.6 2.5E+02 0.0084 32.4 9.7 109 3-132 381-517 (1706)
363 1evy_A Glycerol-3-phosphate de 25.5 32 0.0011 32.2 2.4 32 6-42 16-47 (366)
364 1zl0_A Hypothetical protein PA 25.5 1.3E+02 0.0044 27.4 6.4 76 284-382 62-139 (311)
365 2l2q_A PTS system, cellobiose- 25.5 92 0.0032 23.1 4.6 35 6-40 5-39 (109)
366 3md9_A Hemin-binding periplasm 25.4 58 0.002 28.3 4.0 33 98-132 55-89 (255)
367 1orr_A CDP-tyvelose-2-epimeras 25.3 55 0.0019 29.9 4.0 33 5-41 1-33 (347)
368 1yio_A Response regulatory pro 25.2 71 0.0024 26.5 4.4 36 97-134 43-85 (208)
369 1qkk_A DCTD, C4-dicarboxylate 25.2 73 0.0025 24.8 4.3 39 96-136 41-86 (155)
370 3jte_A Response regulator rece 25.2 96 0.0033 23.5 4.9 33 104-136 49-88 (143)
371 1a2z_A Pyrrolidone carboxyl pe 25.2 69 0.0024 27.5 4.2 28 5-32 1-30 (220)
372 3bul_A Methionine synthase; tr 25.2 82 0.0028 31.6 5.3 44 5-48 98-141 (579)
373 2pju_A Propionate catabolism o 25.2 46 0.0016 28.8 3.1 32 97-133 149-180 (225)
374 1ydh_A AT5G11950; structural g 25.1 1E+02 0.0034 26.4 5.2 40 3-42 7-50 (216)
375 2r25_B Osmosensing histidine p 25.0 1.2E+02 0.004 22.8 5.4 32 104-135 52-91 (133)
376 3h4t_A Glycosyltransferase GTF 25.0 2.3E+02 0.0079 26.4 8.5 89 6-131 221-310 (404)
377 2etv_A Iron(III) ABC transport 24.8 47 0.0016 30.7 3.4 35 94-131 89-124 (346)
378 2l82_A Designed protein OR32; 24.8 1.7E+02 0.0059 21.6 5.6 34 275-312 3-36 (162)
379 1xjc_A MOBB protein homolog; s 24.7 1.2E+02 0.004 24.8 5.4 39 5-43 4-42 (169)
380 1yb4_A Tartronic semialdehyde 24.6 61 0.0021 28.9 4.1 32 4-40 2-33 (295)
381 3sxp_A ADP-L-glycero-D-mannohe 24.6 3.9E+02 0.013 24.2 13.6 35 5-43 10-46 (362)
382 4dad_A Putative pilus assembly 24.6 54 0.0018 25.2 3.3 41 93-135 57-105 (146)
383 3pdu_A 3-hydroxyisobutyrate de 24.6 42 0.0015 30.0 3.0 33 5-42 1-33 (287)
384 2hmt_A YUAA protein; RCK, KTN, 24.5 37 0.0013 26.2 2.3 33 5-42 6-38 (144)
385 2ark_A Flavodoxin; FMN, struct 24.5 79 0.0027 26.1 4.5 40 5-44 4-45 (188)
386 3c97_A Signal transduction his 24.5 1.2E+02 0.0042 22.9 5.4 25 97-123 49-75 (140)
387 3cfy_A Putative LUXO repressor 24.5 80 0.0027 24.0 4.3 36 98-135 44-86 (137)
388 3afn_B Carbonyl reductase; alp 24.5 49 0.0017 28.7 3.4 39 1-42 1-40 (258)
389 3hdg_A Uncharacterized protein 24.4 68 0.0023 24.2 3.9 39 95-135 44-89 (137)
390 3ip3_A Oxidoreductase, putativ 24.4 3.3E+02 0.011 24.7 9.2 114 274-403 4-126 (337)
391 2zr9_A Protein RECA, recombina 24.3 85 0.0029 29.1 5.0 40 5-44 61-100 (349)
392 1q1v_A DEK protein; winged-hel 24.2 1.2E+02 0.0039 20.7 4.3 36 408-443 10-45 (70)
393 3qbc_A 2-amino-4-hydroxy-6-hyd 24.1 94 0.0032 25.2 4.5 29 274-302 5-33 (161)
394 3psh_A Protein HI_1472; substr 24.0 62 0.0021 29.5 4.1 33 98-132 80-113 (326)
395 1o4v_A Phosphoribosylaminoimid 24.0 51 0.0018 27.3 3.0 140 272-443 12-162 (183)
396 3rpe_A MDAB, modulator of drug 24.0 1E+02 0.0035 26.4 5.1 39 4-42 24-69 (218)
397 3s40_A Diacylglycerol kinase; 24.0 1E+02 0.0035 27.9 5.4 44 1-44 3-50 (304)
398 1tvm_A PTS system, galactitol- 24.0 1.3E+02 0.0046 22.4 5.3 37 4-40 20-57 (113)
399 3ga2_A Endonuclease V; alpha-b 24.0 81 0.0028 27.6 4.4 40 93-132 98-144 (246)
400 1tjn_A Sirohydrochlorin cobalt 23.8 87 0.003 25.1 4.4 38 273-310 25-64 (156)
401 3fwz_A Inner membrane protein 23.8 45 0.0015 26.0 2.7 34 5-43 7-40 (140)
402 2j48_A Two-component sensor ki 23.8 95 0.0033 22.2 4.5 37 96-134 39-84 (119)
403 2xdq_B Light-independent proto 23.8 50 0.0017 32.6 3.5 34 93-131 363-396 (511)
404 3sr3_A Microcin immunity prote 23.7 1E+02 0.0035 28.4 5.5 28 285-312 62-89 (336)
405 3eul_A Possible nitrate/nitrit 23.6 75 0.0026 24.6 4.0 41 93-135 52-99 (152)
406 3h2s_A Putative NADH-flavin re 23.6 67 0.0023 27.0 4.0 32 7-42 2-33 (224)
407 3lte_A Response regulator; str 23.6 1.2E+02 0.004 22.5 5.1 37 96-134 44-88 (132)
408 1cbk_A Protein (7,8-dihydro-6- 23.6 95 0.0032 25.2 4.5 29 275-303 3-31 (160)
409 1kgs_A DRRD, DNA binding respo 23.5 98 0.0034 25.9 5.1 39 96-136 40-85 (225)
410 3aek_B Light-independent proto 23.4 55 0.0019 32.5 3.7 34 93-131 340-373 (525)
411 3v2h_A D-beta-hydroxybutyrate 23.4 75 0.0026 28.2 4.4 34 5-41 24-57 (281)
412 1i3c_A Response regulator RCP1 23.4 1.3E+02 0.0043 23.2 5.4 32 104-135 61-101 (149)
413 4gmf_A Yersiniabactin biosynth 23.3 1.1E+02 0.0036 28.8 5.5 109 273-403 8-125 (372)
414 1u9c_A APC35852; structural ge 23.2 1.4E+02 0.0049 25.2 6.0 40 4-43 3-52 (224)
415 1nks_A Adenylate kinase; therm 23.1 88 0.003 25.4 4.5 36 5-40 1-36 (194)
416 3ruf_A WBGU; rossmann fold, UD 23.1 48 0.0016 30.4 3.1 35 5-43 25-59 (351)
417 2xzm_B RPS0E; ribosome, transl 23.1 77 0.0026 27.7 4.1 32 104-135 114-147 (241)
418 3k9g_A PF-32 protein; ssgcid, 23.0 74 0.0025 27.9 4.3 40 4-44 25-66 (267)
419 4hb9_A Similarities with proba 23.0 49 0.0017 31.0 3.2 30 6-40 2-31 (412)
420 3hh8_A Metal ABC transporter s 23.0 2.1E+02 0.0072 25.7 7.3 74 35-129 184-259 (294)
421 1k68_A Phytochrome response re 22.9 1.2E+02 0.0042 22.5 5.2 32 104-135 55-95 (140)
422 2a3d_A Protein (de novo three- 22.9 91 0.0031 19.9 3.3 30 428-461 6-35 (73)
423 3aek_A Light-independent proto 22.8 3E+02 0.01 26.3 8.8 91 5-129 307-399 (437)
424 3cmu_A Protein RECA, recombina 22.8 1.4E+02 0.0049 34.9 7.3 88 4-114 1426-1515(2050)
425 3kuu_A Phosphoribosylaminoimid 22.6 3.2E+02 0.011 22.4 11.1 141 273-444 12-164 (174)
426 2vo1_A CTP synthase 1; pyrimid 22.6 96 0.0033 27.6 4.5 39 6-44 23-64 (295)
427 1d4o_A NADP(H) transhydrogenas 22.5 91 0.0031 25.5 4.0 39 5-43 22-63 (184)
428 1qkk_A DCTD, C4-dicarboxylate 22.5 2.1E+02 0.0072 21.9 6.6 62 372-440 74-135 (155)
429 2b4a_A BH3024; flavodoxin-like 22.5 88 0.003 23.6 4.2 37 94-132 51-95 (138)
430 3n53_A Response regulator rece 22.4 66 0.0023 24.4 3.4 37 96-134 40-85 (140)
431 2qsj_A DNA-binding response re 22.4 80 0.0027 24.4 4.0 39 94-134 41-87 (154)
432 4eg0_A D-alanine--D-alanine li 22.4 1.2E+02 0.0042 27.3 5.7 38 6-43 14-55 (317)
433 3f67_A Putative dienelactone h 22.4 1E+02 0.0035 25.8 5.0 36 7-42 33-68 (241)
434 3e35_A Uncharacterized protein 22.4 1.6E+02 0.0054 27.0 6.2 182 272-472 104-316 (325)
435 1v5e_A Pyruvate oxidase; oxido 22.3 2E+02 0.0068 28.8 7.7 78 292-380 8-101 (590)
436 1t5b_A Acyl carrier protein ph 22.3 83 0.0028 26.0 4.2 38 5-42 1-44 (201)
437 2ab0_A YAJL; DJ-1/THIJ superfa 22.1 1.5E+02 0.0052 24.7 5.9 38 5-43 2-39 (205)
438 3q9s_A DNA-binding response re 22.1 1.1E+02 0.0039 26.3 5.3 40 94-135 73-118 (249)
439 2yy7_A L-threonine dehydrogena 22.1 2.4E+02 0.0081 24.9 7.7 34 6-43 3-38 (312)
440 1r8j_A KAIA; circadian clock p 22.1 4.1E+02 0.014 23.4 8.7 69 383-461 156-228 (289)
441 2fex_A Conserved hypothetical 22.1 1E+02 0.0035 25.4 4.7 38 5-43 1-39 (188)
442 3g0o_A 3-hydroxyisobutyrate de 22.1 43 0.0015 30.3 2.5 34 4-42 6-39 (303)
443 1qv9_A F420-dependent methylen 22.1 1.4E+02 0.0047 26.0 5.2 44 92-137 54-103 (283)
444 3pfn_A NAD kinase; structural 22.0 33 0.0011 32.2 1.7 57 348-426 105-165 (365)
445 2q62_A ARSH; alpha/beta, flavo 22.0 1.1E+02 0.0037 26.8 5.0 39 4-42 33-74 (247)
446 2d1p_A TUSD, hypothetical UPF0 21.9 1.6E+02 0.0053 23.1 5.4 42 5-46 12-57 (140)
447 2c29_D Dihydroflavonol 4-reduc 21.8 57 0.002 29.7 3.4 38 1-42 1-38 (337)
448 3r6d_A NAD-dependent epimerase 21.8 98 0.0034 26.0 4.7 35 5-42 4-39 (221)
449 2qv0_A Protein MRKE; structura 21.6 1.3E+02 0.0045 22.7 5.1 28 95-124 48-77 (143)
450 1ys7_A Transcriptional regulat 21.6 1.2E+02 0.0039 25.6 5.1 37 96-134 45-88 (233)
451 1t1j_A Hypothetical protein; s 21.5 1.2E+02 0.0041 23.4 4.5 33 5-37 7-47 (125)
452 1geg_A Acetoin reductase; SDR 21.5 85 0.0029 27.3 4.3 35 5-42 1-35 (256)
453 3p0r_A Azoreductase; structura 21.5 92 0.0032 26.3 4.4 37 5-41 4-47 (211)
454 2r7a_A Bacterial heme binding 21.4 78 0.0027 27.5 4.0 33 98-132 55-89 (256)
455 2prs_A High-affinity zinc upta 21.4 1.6E+02 0.0054 26.3 6.1 39 91-131 212-252 (284)
456 4dik_A Flavoprotein; TM0755, e 21.4 73 0.0025 30.4 4.0 48 261-308 253-300 (410)
457 1k66_A Phytochrome response re 21.3 1.4E+02 0.0048 22.5 5.3 32 104-135 62-102 (149)
458 4ep4_A Crossover junction endo 21.3 1.6E+02 0.0055 23.9 5.5 50 84-136 46-110 (166)
459 3dkr_A Esterase D; alpha beta 21.3 89 0.003 26.1 4.3 37 6-42 22-58 (251)
460 3cmu_A Protein RECA, recombina 21.2 1.1E+02 0.0037 35.8 5.9 47 3-49 1079-1125(2050)
461 3s2u_A UDP-N-acetylglucosamine 21.2 1.3E+02 0.0044 27.9 5.7 26 351-378 92-120 (365)
462 4e12_A Diketoreductase; oxidor 21.1 69 0.0024 28.6 3.6 34 4-42 3-36 (283)
463 3tsa_A SPNG, NDP-rhamnosyltran 21.1 1.1E+02 0.0039 28.2 5.4 29 351-381 114-143 (391)
464 3u9t_A MCC alpha, methylcroton 21.0 1.4E+02 0.0048 30.6 6.3 34 6-44 29-62 (675)
465 1o4v_A Phosphoribosylaminoimid 21.0 3.5E+02 0.012 22.3 12.5 104 286-424 52-157 (183)
466 3ged_A Short-chain dehydrogena 20.9 85 0.0029 27.5 4.1 35 5-42 1-35 (247)
467 2fsv_C NAD(P) transhydrogenase 20.9 1E+02 0.0034 25.7 4.0 39 5-43 46-87 (203)
468 3r8n_B 30S ribosomal protein S 20.8 90 0.0031 26.8 4.0 32 104-135 149-182 (218)
469 2hpv_A FMN-dependent NADH-azor 20.8 90 0.0031 26.1 4.2 37 5-41 1-44 (208)
470 3ehd_A Uncharacterized conserv 20.7 2E+02 0.0069 23.2 5.9 39 4-42 3-42 (162)
471 3lv8_A DTMP kinase, thymidylat 20.7 1.9E+02 0.0065 25.0 6.3 36 7-42 29-65 (236)
472 3cnb_A DNA-binding response re 20.7 1.2E+02 0.0041 22.8 4.7 40 95-136 47-95 (143)
473 3cg4_A Response regulator rece 20.7 1.1E+02 0.0038 23.0 4.5 38 95-134 44-90 (142)
474 1t2a_A GDP-mannose 4,6 dehydra 20.6 76 0.0026 29.4 4.0 36 4-43 22-58 (375)
475 3f6c_A Positive transcription 20.6 86 0.0029 23.4 3.7 35 98-134 42-83 (134)
476 2qvg_A Two component response 20.5 1.4E+02 0.0047 22.5 5.0 32 104-135 59-99 (143)
477 3dff_A Teicoplanin pseudoaglyc 20.4 94 0.0032 27.7 4.3 41 89-131 135-185 (273)
478 1weh_A Conserved hypothetical 20.4 1.1E+02 0.0037 25.1 4.3 38 5-42 1-42 (171)
479 3qjg_A Epidermin biosynthesis 20.4 3.5E+02 0.012 22.0 8.5 112 273-398 6-141 (175)
480 1djl_A Transhydrogenase DIII; 20.2 1.1E+02 0.0036 25.7 4.0 39 5-43 45-86 (207)
481 1qyc_A Phenylcoumaran benzylic 20.2 77 0.0026 28.3 3.8 35 5-43 4-38 (308)
482 3h5i_A Response regulator/sens 20.2 1.6E+02 0.0055 22.1 5.3 31 104-134 50-87 (140)
483 2raf_A Putative dinucleotide-b 20.1 74 0.0025 26.9 3.4 33 5-42 19-51 (209)
484 2r85_A PURP protein PF1517; AT 20.1 86 0.003 28.4 4.2 33 6-44 3-35 (334)
485 2c5m_A CTP synthase; cytidine 20.1 79 0.0027 27.9 3.5 39 5-43 22-63 (294)
486 1n2z_A Vitamin B12 transport p 20.1 1.6E+02 0.0056 25.2 5.8 34 98-133 53-88 (245)
487 2vzf_A NADH-dependent FMN redu 20.1 1.1E+02 0.0037 25.5 4.4 38 5-42 2-43 (197)
488 1ozh_A ALS, acetolactate synth 20.0 2.6E+02 0.009 27.7 8.0 26 355-380 75-106 (566)
No 1
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=100.00 E-value=1e-66 Score=517.93 Aligned_cols=431 Identities=23% Similarity=0.322 Sum_probs=345.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCC----Chhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLG--LNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGS----PATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~----~~~~ 78 (473)
..||+++|+|++||++|++.||+.|++|| +.|||++++.+...+.+.... ..++++|..+|..-.++.. +...
T Consensus 13 ~~hvv~~P~p~~GHi~P~l~Lak~L~~~g~~~~vT~~~t~~~~~~~~~~~~~-~~~~i~~~~ipdglp~~~~~~~~~~~~ 91 (454)
T 3hbf_A 13 LLHVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNE-FLPNIKYYNVHDGLPKGYVSSGNPREP 91 (454)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHSCSSSSC-CCTTEEEEECCCCCCTTCCCCSCTTHH
T ss_pred CCEEEEEcCCcccHHHHHHHHHHHHHhCCCCEEEEEEeCHHHHHhhhccccc-CCCCceEEecCCCCCCCccccCChHHH
Confidence 47999999999999999999999999999 999999998665555433211 1247999999832111111 1233
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCC-CCC
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDD-PDN 157 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~-~~~ 157 (473)
+..+...+...+.+.+.+++++...++||||+|.+++|+..+|+++|||++.|++++++.+..+.+.......... ...
T Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iI~D~~~~w~~~vA~~lgIP~~~f~t~~a~~~~~~~~~~~~~~~~~~~~~~ 171 (454)
T 3hbf_A 92 IFLFIKAMQENFKHVIDEAVAETGKNITCLVTDAFFWFGADLAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVH 171 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEETTCTTHHHHHHHTTCEEEEEECSCHHHHHHHHTHHHHHHTCCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCcEEEECCcchHHHHHHHHhCCCEEEEeCccHHHHHHHHhhHHHHhhcCCCccc
Confidence 4445555544555666666655323799999999999999999999999999999999988877664331100000 001
Q ss_pred CCcc-ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEe
Q 042753 158 VDAL-VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAV 236 (473)
Q Consensus 158 ~~~~-~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~v 236 (473)
.+.+ ..+|+++. +..++++.++.. .......+++.+......+..++++||+++||+++++.+++.+ |++++|
T Consensus 172 ~~~~~~~iPg~p~---~~~~dlp~~~~~-~~~~~~~~~~~~~~~~~~~~~~vl~ns~~eLE~~~~~~~~~~~--~~v~~v 245 (454)
T 3hbf_A 172 DVKSIDVLPGFPE---LKASDLPEGVIK-DIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKF--KLLLNV 245 (454)
T ss_dssp TSSCBCCSTTSCC---BCGGGSCTTSSS-CTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHTTS--SCEEEC
T ss_pred cccccccCCCCCC---cChhhCchhhcc-CCchHHHHHHHHHHHhhccCCEEEECChhHhCHHHHHHHHhcC--CCEEEE
Confidence 1223 34888875 888888887654 2334456777788888889999999999999999999888765 589999
Q ss_pred ccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccC
Q 042753 237 GPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERH 316 (473)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 316 (473)
||+.... + . .....++++.+|++.++++++|||||||....+.+++.+++.+|++.+++|||+++.+.
T Consensus 246 GPl~~~~-~-----~---~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~~--- 313 (454)
T 3hbf_A 246 GPFNLTT-P-----Q---RKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGDP--- 313 (454)
T ss_dssp CCHHHHS-C-----C---SCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSCH---
T ss_pred CCccccc-c-----c---ccccchHHHHHHHhcCCCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCcc---
Confidence 9997643 2 0 00224568999999888899999999999988899999999999999999999999752
Q ss_pred CcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh
Q 042753 317 ASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL 396 (473)
Q Consensus 317 ~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 396 (473)
.+.+|++|.++.. +|+++++|+||.+||+|+++++|||||||||++||+++|||||++|++.||+.||+++++.+
T Consensus 314 ----~~~lp~~~~~~~~-~~~~vv~w~Pq~~vL~h~~v~~fvtH~G~~S~~Eal~~GvP~i~~P~~~DQ~~Na~~v~~~~ 388 (454)
T 3hbf_A 314 ----KEKLPKGFLERTK-TKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVL 388 (454)
T ss_dssp ----HHHSCTTHHHHTT-TTEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHTTS
T ss_pred ----hhcCCHhHHhhcC-CceEEEeeCCHHHHHhhcCcCeEEecCCcchHHHHHHcCCCEecCcccccHHHHHHHHHHhh
Confidence 1358888887765 57777799999999999999999999999999999999999999999999999999999657
Q ss_pred cceEEeccCCCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 397 GVGIRVGEGTRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 397 G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
|+|+.++ ...+++++|.++|+++|+++ ++||++|+++++.+++++.+||||++++++|++++.
T Consensus 389 g~Gv~l~---~~~~~~~~l~~av~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~i~ 453 (454)
T 3hbf_A 389 EIGVGVD---NGVLTKESIKKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVT 453 (454)
T ss_dssp CSEEECG---GGSCCHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHHHT
T ss_pred CeeEEec---CCCCCHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHh
Confidence 9999998 77899999999999999874 489999999999999999999999999999999874
No 2
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=100.00 E-value=5.7e-62 Score=491.98 Aligned_cols=440 Identities=28% Similarity=0.442 Sum_probs=327.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCC--ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCCh-hhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQN--NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPA-TRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~--~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~-~~~~ 80 (473)
++||+++|+|++||++|+++||++|++| ||+|||++++. +...+.+... ....+++|+.++.......... ..+.
T Consensus 6 ~~~vl~~p~p~~GHv~P~l~La~~L~~r~Gh~Vt~~t~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (480)
T 2vch_A 6 TPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLD-SLPSSISSVFLPPVDLTDLSSSTRIES 84 (480)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHHHCCEEEEEECCSSSCC-CHHHHHC--CCTTEEEEECCCCCCTTSCTTCCHHH
T ss_pred CcEEEEecCcchhHHHHHHHHHHHHHhCCCCEEEEEECCCcchhhhhhhhcc-ccCCCceEEEcCCCCCCCCCCchhHHH
Confidence 5799999999999999999999999998 99999999987 4444443211 0024799999885421111111 2222
Q ss_pred HHHHHHHHHhhHHHHHHHhcC--CCCC-cEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc---CCCCCC
Q 042753 81 KFMRVLRELHYPALLDWFKSH--PSPP-VAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD---LPTNDD 154 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~--~~~p-D~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~---~p~~~~ 154 (473)
.+...+. ...+.+.+++++. ..++ ||||+|.++.|+..+|+++|||++.++++++.....+.+.... .+. .
T Consensus 85 ~~~~~~~-~~~~~l~~ll~~~~~~~~~pd~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~--~ 161 (480)
T 2vch_A 85 RISLTVT-RSNPELRKVFDSFVEGGRLPTALVVDLFGTDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETVSC--E 161 (480)
T ss_dssp HHHHHHH-TTHHHHHHHHHHHHHTTCCCSEEEECTTCGGGHHHHHHTTCCEEEEECSCHHHHHHHHHHHHHHHHCCS--C
T ss_pred HHHHHHH-hhhHHHHHHHHHhccCCCCCeEEEECCcchhHHHHHHHcCCCEEEEECccHHHHHHHHHHHHHHhcCCC--c
Confidence 2333333 4556677777652 1177 9999999999999999999999999999998766665443311 100 0
Q ss_pred CCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhh--CCCc
Q 042753 155 PDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEM--GHDR 232 (473)
Q Consensus 155 ~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~--~~~~ 232 (473)
......+..+|+++. +...+++..+... .....+.+.+......+..++++||+.++|+..++.+.+.. . ++
T Consensus 162 ~~~~~~~~~~Pg~~p---~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~nt~~ele~~~~~~l~~~~~~~-~~ 235 (480)
T 2vch_A 162 FRELTEPLMLPGCVP---VAGKDFLDPAQDR--KDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDK-PP 235 (480)
T ss_dssp GGGCSSCBCCTTCCC---BCGGGSCGGGSCT--TSHHHHHHHHHHHHGGGCSEEEESCCTTTSHHHHHHHHSCCTTC-CC
T ss_pred ccccCCcccCCCCCC---CChHHCchhhhcC--CchHHHHHHHHHHhcccCCEEEEcCHHHHhHHHHHHHHhcccCC-Cc
Confidence 000012334566653 4555555543221 11234445555666778899999999999998888776421 2 58
Q ss_pred EEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 233 VWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 233 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
+++|||+.... . ... .+..++++.+|++.++++++|||||||....+.+++.+++++|++.+++|||+++..
T Consensus 236 v~~vGpl~~~~-~----~~~---~~~~~~~~~~wLd~~~~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~ 307 (480)
T 2vch_A 236 VYPVGPLVNIG-K----QEA---KQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSP 307 (480)
T ss_dssp EEECCCCCCCS-C----SCC--------CHHHHHHHTSCTTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred EEEEecccccc-c----ccc---CccchhHHHHHhcCCCCCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCc
Confidence 99999998654 2 000 022457899999997789999999999988889999999999999999999999874
Q ss_pred CccC----C----cccC-CCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccc
Q 042753 313 DERH----A----SQDC-GVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA 383 (473)
Q Consensus 313 ~~~~----~----~~~~-~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 383 (473)
.... + +.+. +.+|++|.++....++++.+|+||.+||+|+++++|||||||||++||+++|||||++|++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~Pq~~vL~h~~v~~fvtHgG~~S~~Eal~~GvP~i~~P~~~ 387 (480)
T 2vch_A 308 SGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYA 387 (480)
T ss_dssp CSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEESCCCHHHHHHSTTEEEEEECCCHHHHHHHHHHTCCEEECCCST
T ss_pred cccccccccccccccchhhhcCHHHHHHhCCCeEEEeCccCHHHHhCCCCcCeEEecccchhHHHHHHcCCCEEeccccc
Confidence 2000 0 0111 35899999988888888877999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 384 DQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVD---GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 384 DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~---~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
||+.||+++++.+|+|+.++..+...+++++|+++|+++|+ ++ +||++|+++++.+++++.+||++..++++|+++
T Consensus 388 DQ~~na~~l~~~~G~g~~l~~~~~~~~~~~~l~~av~~vl~~~~~~-~~r~~a~~l~~~~~~a~~~gGss~~~~~~~v~~ 466 (480)
T 2vch_A 388 EQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGK-GVRNKMKELKEAACRVLKDDGTSTKALSLVALK 466 (480)
T ss_dssp THHHHHHHHHHTTCCEECCCCCTTSCCCHHHHHHHHHHHHTSTHHH-HHHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhCeEEEeecccCCccCHHHHHHHHHHHhcCcchH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999854779999998211127999999999999998 54 999999999999998888999999999999999
Q ss_pred HHh
Q 042753 461 INE 463 (473)
Q Consensus 461 ~~~ 463 (473)
+++
T Consensus 467 ~~~ 469 (480)
T 2vch_A 467 WKA 469 (480)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 3
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=100.00 E-value=5.7e-60 Score=475.58 Aligned_cols=430 Identities=27% Similarity=0.448 Sum_probs=326.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCCh-----hhhhhhccCCCCCCeeEEEcCCCCCCCCC--C
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNL-----PLLDSLNANHPSTSLQSLVLPQPKWPAGS--P 75 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~-----~~i~~~~~~~~~~~~~f~~l~~~~~~~~~--~ 75 (473)
.+||+++|+|++||++|++.||++|++| ||+|||++++.+. ..+.+. . ...++++|..+|........ .
T Consensus 9 ~~~vv~~p~p~~GHi~P~l~La~~L~~r~pG~~Vt~v~t~~~~~~~~~~~~~~~-~-~~~~~i~~~~lp~~~~~~~~~~~ 86 (463)
T 2acv_A 9 NSELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSV-L-ASQPQIQLIDLPEVEPPPQELLK 86 (463)
T ss_dssp CEEEEEECCSSTTTHHHHHHHHHHHHHTCTTEEEEEEECCCTTCCCCHHHHHHH-H-CSCTTEEEEECCCCCCCCGGGGG
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhcCCCcEEEEEEcCCcchhhhhhhhhhc-c-cCCCCceEEECCCCCCCcccccC
Confidence 3699999999999999999999999999 9999999998763 222221 1 11247999999854211110 1
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhc---CCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCC
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKS---HPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTN 152 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~ 152 (473)
..... +...+. ...+.+.+++++ . +|||||+|.++.|+..+|+++|||++.++++++..+..+.+.......
T Consensus 87 ~~~~~-~~~~~~-~~~~~~~~ll~~~~~~--~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~- 161 (463)
T 2acv_A 87 SPEFY-ILTFLE-SLIPHVKATIKTILSN--KVVGLVLDFFCVSMIDVGNEFGIPSYLFLTSNVGFLSLMLSLKNRQIE- 161 (463)
T ss_dssp SHHHH-HHHHHH-HTHHHHHHHHHHHCCT--TEEEEEEEGGGGGGHHHHHHTTCCEEEEESSCHHHHHHHHHGGGSCTT-
T ss_pred CccHH-HHHHHH-hhhHHHHHHHHhccCC--CCeEEEECCcchhHHHHHHHcCCCEEEEeCchHHHHHHHHHHHhhccc-
Confidence 11111 334443 556678888876 5 899999999999999999999999999999998877666554432100
Q ss_pred CCCCCCCc---cccCCCC-CCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhh
Q 042753 153 DDPDNVDA---LVSFPRV-PNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEM 228 (473)
Q Consensus 153 ~~~~~~~~---~~~~p~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~ 228 (473)
........ +..+|++ +. +..++++..+... ...++.+.+......+..++++|||+++|+...+.+.+..
T Consensus 162 ~~~~~~~~~~~~~~~pg~~~~---~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~nt~~ele~~~~~~l~~~~ 235 (463)
T 2acv_A 162 EVFDDSDRDHQLLNIPGISNQ---VPSNVLPDACFNK---DGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHD 235 (463)
T ss_dssp CCCCCSSGGGCEECCTTCSSC---EEGGGSCHHHHCT---TTHHHHHHHHHHHHTTSSEEEESCCHHHHHHHHHHHHHHC
T ss_pred CCCCCccccCceeECCCCCCC---CChHHCchhhcCC---chHHHHHHHHHHhcccCCEEEECCHHHHhHHHHHHHHhcc
Confidence 00111112 4456776 43 4455555444322 2244555556666778889999999999999888877755
Q ss_pred --CCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCcE
Q 042753 229 --GHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRY-VLTAKQIHELAAALEKTDVDF 305 (473)
Q Consensus 229 --~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~ 305 (473)
+ +++++|||+.... .. ......+..++++.+|++.++++++|||||||.. ..+.+++.+++++|++.+++|
T Consensus 236 ~p~-~~v~~vGpl~~~~-~~----~~~~~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~ 309 (463)
T 2acv_A 236 EKI-PPIYAVGPLLDLK-GQ----PNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRF 309 (463)
T ss_dssp TTS-CCEEECCCCCCSS-CC----CBTTBCHHHHHHHHHHHHTSCTTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEE
T ss_pred ccC-CcEEEeCCCcccc-cc----cccccccccchhHHHHHhcCCCCceEEEEeccccccCCHHHHHHHHHHHHhCCCcE
Confidence 5 6899999998654 10 0000001235689999998778899999999998 788889999999999999999
Q ss_pred EEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccccc
Q 042753 306 VYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDAD 384 (473)
Q Consensus 306 i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 384 (473)
||+++.+. +.+|++|.++.. .+|+++.+|+||.++|+|+++++|||||||||++||+++|||||++|++.|
T Consensus 310 l~~~~~~~--------~~l~~~~~~~~~~~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~s~~Eal~~GvP~i~~P~~~d 381 (463)
T 2acv_A 310 LWSNSAEK--------KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAE 381 (463)
T ss_dssp EEECCCCG--------GGSCTTHHHHHHHHCSEEEESSCCHHHHHHSTTEEEEEECCCHHHHHHHHHTTCCEEECCCSTT
T ss_pred EEEECCCc--------ccCChhHHHhhccCCCEEEEccCCHHHHhCCCccCeEEecCCchhHHHHHHcCCCeeeccchhh
Confidence 99998741 237778876651 346777799999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHhcceEEe-ccCCCC--CCCHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 385 QYTNAQLLVDQLGVGIRV-GEGTRN--IPESDELARLLAQSVD-GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 385 Q~~na~rv~~~~G~G~~l-~~~~~~--~~~~~~l~~~i~~~l~-~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
|+.||+++++.+|+|+.+ ...+.. .+++++|.++|+++|+ ++ +||++|+++++.+++++.+||||++++++|+++
T Consensus 382 Q~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~ll~~~~-~~r~~a~~l~~~~~~a~~~gGss~~~l~~~v~~ 460 (463)
T 2acv_A 382 QQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDS-IVHKKVQEMKEMSRNAVVDGGSSLISVGKLIDD 460 (463)
T ss_dssp HHHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHHTCTTC-THHHHHHHHHHHHHHHTSTTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 999999963366999999 311134 6899999999999997 45 899999999999999888999999999999999
Q ss_pred HH
Q 042753 461 IN 462 (473)
Q Consensus 461 ~~ 462 (473)
++
T Consensus 461 ~~ 462 (463)
T 2acv_A 461 IT 462 (463)
T ss_dssp HH
T ss_pred hc
Confidence 85
No 4
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=100.00 E-value=7.9e-61 Score=485.25 Aligned_cols=445 Identities=26% Similarity=0.421 Sum_probs=322.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCC--C-CCCeeEEEcCCCCCC-C--CCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANH--P-STSLQSLVLPQPKWP-A--GSPATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~--~-~~~~~f~~l~~~~~~-~--~~~~~~ 78 (473)
.+||+++|+|++||++|++.||++|++|||+|||++++.+...+.+..... . .++++|..++..-.+ . ......
T Consensus 8 ~~~vl~~p~p~~GHi~P~l~La~~L~~rG~~VT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~lp~~~~~~~~~~~ 87 (482)
T 2pq6_A 8 KPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFESIPDGLTPMEGDGDVSQD 87 (482)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEEEHHHHHHHC------------CEEEEEECCCCC---------CC
T ss_pred CCEEEEecCccchhHHHHHHHHHHHHhCCCeEEEEeCCchhhhhccccccccccCCCceEEEECCCCCCCcccccCcchh
Confidence 369999999999999999999999999999999999997766554431100 0 137899988732111 0 010122
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcC-----CCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhh-----cc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSH-----PSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMW-----TD 148 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~-----~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~-----~~ 148 (473)
+..+...+...+.+.+++++++. ..+|||||+|.++.|+..+|+++|||+|.++++++.....+.+.. .+
T Consensus 88 ~~~~~~~~~~~~~~~l~~ll~~l~~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
T 2pq6_A 88 VPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGI 167 (482)
T ss_dssp HHHHHHHHTTSSHHHHHHHHHHHHTCSSSCCCCEEEEETTCTHHHHHHHHTTCCEEEEECSCHHHHHHHTTHHHHHHTTC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhccCCCceEEEECCcchhHHHHHHHcCCCEEEEecccHHHHHHHHHHHHHHhcCC
Confidence 33344333224455666666632 128999999999999999999999999999999987665543322 23
Q ss_pred CCCCCCCC--C----CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHH
Q 042753 149 LPTNDDPD--N----VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYID 222 (473)
Q Consensus 149 ~p~~~~~~--~----~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~ 222 (473)
.|. .... . +.....+|+++. +..++++.++..........+.+........+..++++||++++|++.++
T Consensus 168 ~p~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~nt~~~le~~~~~ 243 (482)
T 2pq6_A 168 IPF-KDESYLTNGCLETKVDWIPGLKN---FRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVIN 243 (482)
T ss_dssp SSC-SSGGGGTSSGGGCBCCSSTTCCS---CBGGGSCGGGCCSCTTCHHHHHHHHHHHTCCTTCCEEESSCGGGGHHHHH
T ss_pred CCC-ccccccccccccCccccCCCCCC---CchHHCchhhccCCcccHHHHHHHHHHHhhccCCEEEEcChHHHhHHHHH
Confidence 343 1100 0 001112444432 44445555443222223334445555566778899999999999999998
Q ss_pred HHHHhhCCCcEEEeccCCCC-CCcchhhccCC--CCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHH
Q 042753 223 HMKKEMGHDRVWAVGPVLPP-DDDLVESMCRG--GSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALE 299 (473)
Q Consensus 223 ~~~~~~~~~~~~~vGpl~~~-~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~ 299 (473)
.+++.+ +++++|||+... ......+.... ...+..+.++.+|++.++++++|||||||....+.+++.+++++|+
T Consensus 244 ~~~~~~--~~v~~VGPl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wld~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~ 321 (482)
T 2pq6_A 244 ALSSTI--PSIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLA 321 (482)
T ss_dssp HHHTTC--TTEEECCCHHHHHHTSTTGGGGCC---------CHHHHHHTTSCTTCEEEEECCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHhC--CcEEEEcCCcccccccccccccccccccccccchHHHHHHhcCCCCceEEEecCCcccCCHHHHHHHHHHHH
Confidence 888766 489999999753 10000000000 0112234568999998778899999999998878888999999999
Q ss_pred hCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecC
Q 042753 300 KTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW 379 (473)
Q Consensus 300 ~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~ 379 (473)
+.+++|||+++.+.. ......+|++|.++. ++|+++.+|+||.++|+|+++++|||||||||++||+++|||||++
T Consensus 322 ~~~~~~l~~~~~~~~---~~~~~~l~~~~~~~~-~~~~~v~~~~pq~~~L~h~~~~~~vth~G~~s~~Eal~~GvP~i~~ 397 (482)
T 2pq6_A 322 NCKKSFLWIIRPDLV---IGGSVIFSSEFTNEI-ADRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397 (482)
T ss_dssp HTTCEEEEECCGGGS---TTTGGGSCHHHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEEC
T ss_pred hcCCcEEEEEcCCcc---ccccccCcHhHHHhc-CCCEEEEeecCHHHHhcCCCCCEEEecCCcchHHHHHHcCCCEEec
Confidence 999999999986420 000123788887776 4688888999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHH
Q 042753 380 PMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDF 457 (473)
Q Consensus 380 P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~ 457 (473)
|++.||+.||+++++.+|+|+.++ .++++++|.++|+++|+|+ ++|+++|+++++.+++++.+||||++++++|
T Consensus 398 P~~~dQ~~na~~~~~~~G~g~~l~----~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGss~~~l~~~ 473 (482)
T 2pq6_A 398 PFFADQPTDCRFICNEWEIGMEID----TNVKREELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKV 473 (482)
T ss_dssp CCSTTHHHHHHHHHHTSCCEEECC----SSCCHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred CcccchHHHHHHHHHHhCEEEEEC----CCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999999975569999996 3699999999999999986 2599999999999999999999999999999
Q ss_pred HHHHHh
Q 042753 458 IKRINE 463 (473)
Q Consensus 458 ~~~~~~ 463 (473)
+++++.
T Consensus 474 v~~~~~ 479 (482)
T 2pq6_A 474 IKDVLL 479 (482)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 998754
No 5
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=100.00 E-value=4.1e-59 Score=468.07 Aligned_cols=433 Identities=23% Similarity=0.339 Sum_probs=318.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCC--eEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCC----CChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGL--NVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAG----SPATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~----~~~~~ 78 (473)
++||+++|+|++||++|++.||++|++||| .|||++++.+...+.+...+....+++|..++..-.++. .+...
T Consensus 7 ~~hvv~~p~p~~GHi~P~l~la~~L~~rGh~v~vt~~~t~~~~~~~~~~~~~~~~~~i~~~~i~~glp~~~~~~~~~~~~ 86 (456)
T 2c1x_A 7 NPHVAVLAFPFSTHAAPLLAVVRRLAAAAPHAVFSFFSTSQSNASIFHDSMHTMQCNIKSYDISDGVPEGYVFAGRPQED 86 (456)
T ss_dssp CCEEEEECCCSSSSHHHHHHHHHHHHHHCTTSEEEEEECHHHHHHHC-------CTTEEEEECCCCCCTTCCCCCCTTHH
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHHhCCCCeEEEEEeCchhHHHhhccccccCCCceEEEeCCCCCCCcccccCChHHH
Confidence 689999999999999999999999999965 568888875444333321111124789998863211111 11122
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhc-----cCCCCC
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWT-----DLPTND 153 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-----~~p~~~ 153 (473)
+..+...+...+.+.+.+++++...+|||||+|.++.|+..+|+++|||+|.++++++..+..+.+... ..+. .
T Consensus 87 ~~~~~~~~~~~~~~~l~~l~~~~~~~~d~vI~D~~~~~~~~vA~~lgiP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 165 (456)
T 2c1x_A 87 IELFTRAAPESFRQGMVMAVAETGRPVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSG-I 165 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTSTTHHHHHHHHTCEEEEEECSCHHHHHHHHTHHHHHHHHCSSC-C
T ss_pred HHHHHHHhHHHHHHHHHHHHhccCCCceEEEECCchHhHHHHHHHhCCCEEEEeCccHHHHHHHhhhHHHHhccCCcc-c
Confidence 333433333233344444443311289999999999999999999999999999998876655432211 1111 0
Q ss_pred CCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcE
Q 042753 154 DPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRV 233 (473)
Q Consensus 154 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 233 (473)
..........+|+++. +..++++..+..........+.+.+......+..++++||++++|++.++.+++.+ +++
T Consensus 166 ~~~~~~~~~~~pg~~~---~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ns~~~le~~~~~~~~~~~--~~~ 240 (456)
T 2c1x_A 166 QGREDELLNFIPGMSK---VRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKL--KTY 240 (456)
T ss_dssp TTCTTCBCTTSTTCTT---CBGGGSCTTTSSSCTTSHHHHHHHHHHHHGGGSSCEEESSCGGGCHHHHHHHHHHS--SCE
T ss_pred ccccccccccCCCCCc---ccHHhCchhhcCCCcccHHHHHHHHHHHhhhhCCEEEECChHHHhHHHHHHHHhcC--CCE
Confidence 0001111224677764 45555554332111112233445555556677889999999999999888888766 489
Q ss_pred EEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 042753 234 WAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPD 313 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (473)
++|||+.... . . .....+.++.+|++.++++++|||||||....+.+++.+++++|++.+++|||+++.+.
T Consensus 241 ~~vGpl~~~~-~-----~---~~~~~~~~~~~wl~~~~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~ 311 (456)
T 2c1x_A 241 LNIGPFNLIT-P-----P---PVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA 311 (456)
T ss_dssp EECCCHHHHC------------------CHHHHHHTSCTTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG
T ss_pred EEecCcccCc-c-----c---ccccchhhHHHHHhcCCCcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence 9999987644 2 0 00122356899999877899999999999888889999999999999999999998752
Q ss_pred ccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHH
Q 042753 314 ERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLV 393 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 393 (473)
.+.+|++|.++. ++|+.+.+|+||.++|+|+++++|||||||||++||+++|||||++|++.||+.||++++
T Consensus 312 -------~~~l~~~~~~~~-~~~~~v~~w~pq~~vL~h~~~~~fvth~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l~ 383 (456)
T 2c1x_A 312 -------RVHLPEGFLEKT-RGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVE 383 (456)
T ss_dssp -------GGGSCTTHHHHH-TTTEEEESCCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH
T ss_pred -------hhhCCHHHHhhc-CCceEEecCCCHHHHhcCCcCCEEEecCCcchHHHHHHhCceEEecCChhhHHHHHHHHH
Confidence 134788887765 367888899999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVDGP--RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+.||+|+.++ ...+++++|.++|+++|+|+ ++|++||+++++.+++++.+||||++++++|++++.+
T Consensus 384 ~~~g~g~~l~---~~~~~~~~l~~~i~~ll~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~~v~~~~~ 452 (456)
T 2c1x_A 384 DVLEIGVRIE---GGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452 (456)
T ss_dssp HTSCCEEECG---GGSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHTS
T ss_pred HHhCeEEEec---CCCcCHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 6669999998 77899999999999999884 3799999999999999999999999999999998854
No 6
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=1.9e-44 Score=360.72 Aligned_cols=394 Identities=18% Similarity=0.176 Sum_probs=269.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCC------CCh--
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAG------SPA-- 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~------~~~-- 76 (473)
|+||++++++++||++|+++||++|+++||+|+|++++.+.+.+.+. +++|..++.....+. +..
T Consensus 12 ~~~Il~~~~~~~GHv~p~l~la~~L~~~Gh~V~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (424)
T 2iya_A 12 PRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITDEFAAQVKAA-------GATPVVYDSILPKESNPEESWPEDQE 84 (424)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH-------TCEEEECCCCSCCTTCTTCCCCSSHH
T ss_pred cceEEEEeCCCCcccchHHHHHHHHHHCCCeEEEEeCHHHHHHHHhC-------CCEEEecCccccccccchhhcchhHH
Confidence 78999999999999999999999999999999999999887777766 688887764311111 111
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhc-cCCCCCCC
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWT-DLPTNDDP 155 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~-~~p~~~~~ 155 (473)
..+..+...+. ...+.+.+++++. +||+||+|.+..++..+|+++|||+|.+++.++........... ..+.
T Consensus 85 ~~~~~~~~~~~-~~~~~l~~~l~~~--~pD~VI~d~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~---- 157 (424)
T 2iya_A 85 SAMGLFLDEAV-RVLPQLEDAYADD--RPDLIVYDIASWPAPVLGRKWDIPFVQLSPTFVAYEGFEEDVPAVQDPT---- 157 (424)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHTTTS--CCSEEEEETTCTHHHHHHHHHTCCEEEEESSCCCCTTHHHHSGGGSCCC----
T ss_pred HHHHHHHHHHH-HHHHHHHHHHhcc--CCCEEEEcCcccHHHHHHHhcCCCEEEEecccccccccccccccccccc----
Confidence 11122222232 4456788888888 99999999988899999999999999998775421100000000 0000
Q ss_pred CCCCccccCC-CCCCCCCCCccccchhhhccCCCCCchHHHHHH------hhhccCCcEEeecchHHhhHHHHHHHHHhh
Q 042753 156 DNVDALVSFP-RVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSN------MMANKTSWGIVFNSFAELERVYIDHMKKEM 228 (473)
Q Consensus 156 ~~~~~~~~~p-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~s~~~le~~~~~~~~~~~ 228 (473)
.....+...| +......... ..+. ...+ .....+.+.+. ..........+.++.++++++. ..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~l~~~~-----~~~ 228 (424)
T 2iya_A 158 ADRGEEAAAPAGTGDAEEGAE-AEDG-LVRF--FTRLSAFLEEHGVDTPATEFLIAPNRCIVALPRTFQIKG-----DTV 228 (424)
T ss_dssp C----------------------HHH-HHHH--HHHHHHHHHHTTCCSCHHHHHHCCSSEEESSCTTTSTTG-----GGC
T ss_pred cccccccccccccccchhhhc-cchh-HHHH--HHHHHHHHHHcCCCCCHHHhccCCCcEEEEcchhhCCCc-----cCC
Confidence 0000000000 0000000000 0000 0000 00000111110 0011134556777777776531 346
Q ss_pred CCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 042753 229 GHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYC 308 (473)
Q Consensus 229 ~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (473)
+ +++++|||+.... . ...+|++.+.++++|||++||......+.+..+++++++.+.+++|.
T Consensus 229 ~-~~~~~vGp~~~~~-~----------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~~~~ 290 (424)
T 2iya_A 229 G-DNYTFVGPTYGDR-S----------------HQGTWEGPGDGRPVLLIALGSAFTDHLDFYRTCLSAVDGLDWHVVLS 290 (424)
T ss_dssp C-TTEEECCCCCCCC-G----------------GGCCCCCCCSSCCEEEEECCSSSCCCHHHHHHHHHHHTTCSSEEEEE
T ss_pred C-CCEEEeCCCCCCc-c----------------cCCCCCccCCCCCEEEEEcCCCCcchHHHHHHHHHHHhcCCcEEEEE
Confidence 6 7899999976543 1 11246665567899999999998667788999999999989999999
Q ss_pred EeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhh
Q 042753 309 VREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTN 388 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~n 388 (473)
++... . .+.+. . .++|+.+.+|+||.++|+++++ ||||||+||++||+++|||+|++|...||+.|
T Consensus 291 ~g~~~----~--~~~~~-----~-~~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~n 356 (424)
T 2iya_A 291 VGRFV----D--PADLG-----E-VPPNVEVHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMN 356 (424)
T ss_dssp CCTTS----C--GGGGC-----S-CCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHH
T ss_pred ECCcC----C--hHHhc-----c-CCCCeEEecCCCHHHHHhhCCE--EEECCchhHHHHHHHcCCCEEEecCccchHHH
Confidence 88642 0 01110 0 2368999999999999999997 99999999999999999999999999999999
Q ss_pred HHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 389 AQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 389 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
|++++ ++|+|+.+. .++++.++|.++|+++++|+ +|+++++++++.++ ..++.+++++.+++.+.
T Consensus 357 a~~l~-~~g~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 357 AERIV-ELGLGRHIP---RDQVTAEKLREAVLAVASDP-GVAERLAAVRQEIR----EAGGARAAADILEGILA 421 (424)
T ss_dssp HHHHH-HTTSEEECC---GGGCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred HHHHH-HCCCEEEcC---cCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH----hcCcHHHHHHHHHHHHh
Confidence 99999 559999998 67889999999999999997 99999999999985 34667777777766654
No 7
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=100.00 E-value=1e-43 Score=352.72 Aligned_cols=355 Identities=17% Similarity=0.179 Sum_probs=231.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-------CC--C-C
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-------PA--G-S 74 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-------~~--~-~ 74 (473)
.|||||+++|++||++|+++||++|++|||+|||++++.+...... ++.+..+..... .. . .
T Consensus 22 ~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~~~~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (400)
T 4amg_A 22 SMRALFITSPGLSHILPTVPLAQALRALGHEVRYATGGDIRAVAEA--------GLCAVDVSPGVNYAKLFVPDDTDVTD 93 (400)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECSSTHHHHTT--------TCEEEESSTTCCSHHHHSCCC-----
T ss_pred CCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeCcchhhHHhc--------CCeeEecCCchhHhhhcccccccccc
Confidence 5799999999999999999999999999999999999987654332 466665532110 00 0 0
Q ss_pred C---h----hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhc
Q 042753 75 P---A----TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWT 147 (473)
Q Consensus 75 ~---~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 147 (473)
+ . ..+...+..........+.++++++ +||+||+|.+..++..+|+.+|||++.+...+........
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pD~Vv~d~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~---- 167 (400)
T 4amg_A 94 PMHSEGLGEGFFAEMFARVSAVAVDGALRTARSW--RPDLVVHTPTQGAGPLTAAALQLPCVELPLGPADSEPGLG---- 167 (400)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEECTTCTHHHHHHHHTTCCEEECCSSTTTCCHHHH----
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEECcchHHHHHHHHHcCCCceeecccccccccchh----
Confidence 0 0 1111111222224456677888888 9999999999899999999999999987554322110000
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHH-HH
Q 042753 148 DLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHM-KK 226 (473)
Q Consensus 148 ~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~-~~ 226 (473)
..... ...+.+.+................. ...... ..
T Consensus 168 --------------------------------~~~~~-----~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 206 (400)
T 4amg_A 168 --------------------------------ALIRR-----AMSKDYERHGVTGEPTGSVRLTTTP----PSVEALLPE 206 (400)
T ss_dssp --------------------------------HHHHH-----HTHHHHHHTTCCCCCSCEEEEECCC----HHHHHTSCG
T ss_pred --------------------------------hHHHH-----HHHHHHHHhCCCcccccchhhcccC----chhhccCcc
Confidence 00000 0011111111111111111111110 000000 00
Q ss_pred hhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCC--HHHHHHHHHHHHhCCCc
Q 042753 227 EMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLT--AKQIHELAAALEKTDVD 304 (473)
Q Consensus 227 ~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~--~~~~~~~~~al~~~~~~ 304 (473)
....+....+++..... ...+.+|++.+.++++||||+||..... .+.+..+++++++.+.+
T Consensus 207 ~~~~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~ 270 (400)
T 4amg_A 207 DRRSPGAWPMRYVPYNG----------------GAVLPDWLPPAAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAE 270 (400)
T ss_dssp GGCCTTCEECCCCCCCC----------------CEECCTTCSCCTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSE
T ss_pred cccCCcccCcccccccc----------------cccCcccccccCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCce
Confidence 01102233333322222 2334458888788999999999986533 35678899999999999
Q ss_pred EEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccccc
Q 042753 305 FVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDAD 384 (473)
Q Consensus 305 ~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~D 384 (473)
++|.++... ......+| +|+.+.+|+||.++|+|+++ ||||||+||++||+++|||+|++|++.|
T Consensus 271 ~v~~~~~~~----~~~~~~~~---------~~v~~~~~~p~~~lL~~~~~--~v~h~G~~s~~Eal~~GvP~v~~P~~~d 335 (400)
T 4amg_A 271 FVLTLGGGD----LALLGELP---------ANVRVVEWIPLGALLETCDA--IIHHGGSGTLLTALAAGVPQCVIPHGSY 335 (400)
T ss_dssp EEEECCTTC----CCCCCCCC---------TTEEEECCCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC---
T ss_pred EEEEecCcc----ccccccCC---------CCEEEEeecCHHHHhhhhhh--eeccCCccHHHHHHHhCCCEEEecCccc
Confidence 999998763 11222333 68999999999999999997 9999999999999999999999999999
Q ss_pred chhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042753 385 QYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 385 Q~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~ 458 (473)
|+.||+++++ +|+|+.++ ..+.+++ +|+++|+|+ +|+++|+++++.+++ ..+..+.++.++
T Consensus 336 Q~~na~~v~~-~G~g~~l~---~~~~~~~----al~~lL~d~-~~r~~a~~l~~~~~~----~~~~~~~a~~le 396 (400)
T 4amg_A 336 QDTNRDVLTG-LGIGFDAE---AGSLGAE----QCRRLLDDA-GLREAALRVRQEMSE----MPPPAETAAXLV 396 (400)
T ss_dssp CHHHHHHHHH-HTSEEECC---TTTCSHH----HHHHHHHCH-HHHHHHHHHHHHHHT----SCCHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCEEEcC---CCCchHH----HHHHHHcCH-HHHHHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 9999999995 59999999 7777765 667889997 999999999999973 234555555444
No 8
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=2.6e-43 Score=351.39 Aligned_cols=383 Identities=16% Similarity=0.141 Sum_probs=250.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCC-hhhHH-HHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSP-ATRLL-KFM 83 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~-~~~~~-~~~ 83 (473)
|||+|++.++.||++|+++||++|++|||+|+|++++.+.+.+... +++|+.++....+.+.. ..... .+.
T Consensus 1 M~Il~~~~~~~GHv~P~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~-------g~~~~~i~~~~~~~~~~~~~~~~~~~~ 73 (415)
T 1iir_A 1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAPPDCAERLAEV-------GVPHVPVGPSARAPIQRAKPLTAEDVR 73 (415)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHT-------TCCEEECCC-------CCSCCCHHHHH
T ss_pred CeEEEEcCCCchhHHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHc-------CCeeeeCCCCHHHHhhcccccchHHHH
Confidence 5899999999999999999999999999999999999876666654 68888887542111110 00011 111
Q ss_pred HHHHHHhhHHHHHHHh-cCCCCCcEEEeCC-Ccch--HHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCC
Q 042753 84 RVLRELHYPALLDWFK-SHPSPPVAILSDF-FLGW--TQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD 159 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~-~~~~~pD~VV~D~-~~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (473)
..+.......++++++ .. +||+||+|. +..+ +..+|+++|||+|.+++.+.+...
T Consensus 74 ~~~~~~~~~~~~~l~~~~~--~pD~vi~d~~~~~~~~~~~~A~~lgiP~v~~~~~~~~~~~------------------- 132 (415)
T 1iir_A 74 RFTTEAIATQFDEIPAAAE--GCAAVVTTGLLAAAIGVRSVAEKLGIPYFYAFHCPSYVPS------------------- 132 (415)
T ss_dssp HHHHHHHHHHHHHHHHHTT--TCSEEEEESCHHHHHHHHHHHHHHTCCEEEEESSGGGSCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHhc--CCCEEEECChhHhHhhHHHHHHHhCCCEEEEecCCCcCCC-------------------
Confidence 1222122333444443 45 899999998 5567 889999999999999877643100
Q ss_pred ccccCCCCCCCCCCCcc-ccchhhhccCCCCCchHHHHHHhhhcc----------------CCcEEeecchHHhhH-HHH
Q 042753 160 ALVSFPRVPNCPVYPWY-QISHLYRTLKEGDPDWDLHRSNMMANK----------------TSWGIVFNSFAELER-VYI 221 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~s~~~le~-~~~ 221 (473)
.++|.....+.+..+ ......... .....++.+.+...... +. ..+.++.+++++ +
T Consensus 133 --~~~p~~~~~~~~~~~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~-- 206 (415)
T 1iir_A 133 --PYYPPPPLGEPSTQDTIDIPAQWER-NNQSAYQRYGGLLNSHRDAIGLPPVEDIFTFGYTD-HPWVAADPVLAPLQ-- 206 (415)
T ss_dssp --SSSCCCC---------CHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCS-SCEECSCTTTSCCC--
T ss_pred --cccCCccCCccccchHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHcCCCCCCccccccCCC-CEEEeeChhhcCCC--
Confidence 001110000001000 000000000 00000000000000000 11 345555555542 1
Q ss_pred HHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC
Q 042753 222 DHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT 301 (473)
Q Consensus 222 ~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~ 301 (473)
... .++++|||+.... . +..++++.+|++. ++++|||++||.. ...+.+..+++++++.
T Consensus 207 ---~~~---~~~~~vG~~~~~~-~-----------~~~~~~~~~~l~~--~~~~v~v~~Gs~~-~~~~~~~~~~~al~~~ 265 (415)
T 1iir_A 207 ---PTD---LDAVQTGAWILPD-E-----------RPLSPELAAFLDA--GPPPVYLGFGSLG-APADAVRVAIDAIRAH 265 (415)
T ss_dssp ---CCS---SCCEECCCCCCCC-C-----------CCCCHHHHHHHHT--SSCCEEEECC----CCHHHHHHHHHHHHHT
T ss_pred ---ccc---CCeEeeCCCccCc-c-----------cCCCHHHHHHHhh--CCCeEEEeCCCCC-CcHHHHHHHHHHHHHC
Confidence 000 1789999987764 2 3456789999987 4689999999997 6778888899999999
Q ss_pred CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc
Q 042753 302 DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM 381 (473)
Q Consensus 302 ~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~ 381 (473)
+.+++|+++... . ....+ ++|+++.+|+||.++|+++++ ||||||+||+.||+++|||+|++|.
T Consensus 266 ~~~~v~~~g~~~----~-~~~~~---------~~~v~~~~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p~ 329 (415)
T 1iir_A 266 GRRVILSRGWAD----L-VLPDD---------GADCFAIGEVNHQVLFGRVAA--VIHHGGAGTTHVAARAGAPQILLPQ 329 (415)
T ss_dssp TCCEEECTTCTT----C-CCSSC---------GGGEEECSSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCC
T ss_pred CCeEEEEeCCCc----c-cccCC---------CCCEEEeCcCChHHHHhhCCE--EEeCCChhHHHHHHHcCCCEEECCC
Confidence 999999988652 1 01112 258899999999999988886 9999999999999999999999999
Q ss_pred cccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 382 DADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 382 ~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
..||+.||++++ ++|+|+.++ ..+++.++|.++|+++ +|+ +|+++++++++.++ ..++.++.++.+. .+
T Consensus 330 ~~dQ~~na~~l~-~~g~g~~~~---~~~~~~~~l~~~i~~l-~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~-~~ 398 (415)
T 1iir_A 330 MADQPYYAGRVA-ELGVGVAHD---GPIPTFDSLSAALATA-LTP-ETHARATAVAGTIR----TDGAAVAARLLLD-AV 398 (415)
T ss_dssp STTHHHHHHHHH-HHTSEEECS---SSSCCHHHHHHHHHHH-TSH-HHHHHHHHHHHHSC----SCHHHHHHHHHHH-HH
T ss_pred CCccHHHHHHHH-HCCCcccCC---cCCCCHHHHHHHHHHH-cCH-HHHHHHHHHHHHHh----hcChHHHHHHHHH-HH
Confidence 999999999998 559999998 7789999999999999 886 99999999999874 3444555555444 44
Q ss_pred HhhccCCCc
Q 042753 462 NELKSGKNL 470 (473)
Q Consensus 462 ~~~~~~~~~ 470 (473)
.+..+++++
T Consensus 399 ~~~~~~~~~ 407 (415)
T 1iir_A 399 SREKPTVSA 407 (415)
T ss_dssp HTC------
T ss_pred HhcccHHHH
Confidence 444444443
No 9
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=100.00 E-value=1.6e-42 Score=345.89 Aligned_cols=381 Identities=15% Similarity=0.086 Sum_probs=254.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCC---ChhhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGS---PATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~---~~~~~~~~ 82 (473)
|||++++.++.||++|+++||++|+++||+|+|++++.+.+.+... +++|..++....+... .......+
T Consensus 1 MrIl~~~~~~~GH~~p~l~la~~L~~~Gh~V~~~~~~~~~~~v~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (416)
T 1rrv_A 1 MRVLLSVCGTRGDVEIGVALADRLKALGVQTRMCAPPAAEERLAEV-------GVPHVPVGLPQHMMLQEGMPPPPPEEE 73 (416)
T ss_dssp CEEEEEEESCHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHH-------TCCEEECSCCGGGCCCTTSCCCCHHHH
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc-------CCeeeecCCCHHHHHhhccccchhHHH
Confidence 5899999999999999999999999999999999999877777665 6888887754111111 01100011
Q ss_pred HHHHHHHhhHHHHHHHh-cCCCCCcEEEeCCC-cch--HHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCC
Q 042753 83 MRVLRELHYPALLDWFK-SHPSPPVAILSDFF-LGW--TQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNV 158 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~-~~~~~pD~VV~D~~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 158 (473)
...+.......++.+.. .. +||+||+|.+ .++ +..+|+++|||+|.+++.+.+... .
T Consensus 74 ~~~~~~~~~~~~~~l~~~~~--~pD~vi~d~~~~~~~~~~~~A~~~giP~v~~~~~~~~~~~------~----------- 134 (416)
T 1rrv_A 74 QRLAAMTVEMQFDAVPGAAE--GCAAVVAVGDLAAATGVRSVAEKLGLPFFYSVPSPVYLAS------P----------- 134 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSCC------S-----------
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCCEEEEcCchHHHHHHHHHHHHcCCCEEEEeCCCCCCCC------c-----------
Confidence 11111111222222221 45 8999999974 456 789999999999998877543100 0
Q ss_pred CccccCCCCCCCCCCCcc-ccchhhhccCCCCCc----hHHHHHHh------------hhccCCcEEeecchHHhhHHHH
Q 042753 159 DALVSFPRVPNCPVYPWY-QISHLYRTLKEGDPD----WDLHRSNM------------MANKTSWGIVFNSFAELERVYI 221 (473)
Q Consensus 159 ~~~~~~p~l~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~------------~~~~~~~~~~~~s~~~le~~~~ 221 (473)
..+ |.++ +.+... ......... ..... .+.+.+.. ....+. .++.++.++++++.
T Consensus 135 ~~p---~~~~--~~~~~~r~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~l~~~~~~l~~~~- 206 (416)
T 1rrv_A 135 HLP---PAYD--EPTTPGVTDIRVLWEE-RAARFADRYGPTLNRRRAEIGLPPVEDVFGYGHGE-RPLLAADPVLAPLQ- 206 (416)
T ss_dssp SSC---CCBC--SCCCTTCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHTTCCCCSCHHHHTTCS-SCEECSCTTTSCCC-
T ss_pred ccC---CCCC--CCCCchHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHcCCCCCCchhhhccCC-CeEEccCccccCCC-
Confidence 000 1100 001000 000000000 00000 00000000 001122 45666666665321
Q ss_pred HHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh
Q 042753 222 DHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK 300 (473)
Q Consensus 222 ~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~ 300 (473)
. . .++++|||+.... . +..++++.+|++. ++++|||++||... ...+.+..+++++++
T Consensus 207 ----~--~-~~~~~vG~~~~~~-~-----------~~~~~~~~~~l~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~al~~ 265 (416)
T 1rrv_A 207 ----P--D-VDAVQTGAWLLSD-E-----------RPLPPELEAFLAA--GSPPVHIGFGSSSGRGIADAAKVAVEAIRA 265 (416)
T ss_dssp ----S--S-CCCEECCCCCCCC-C-----------CCCCHHHHHHHHS--SSCCEEECCTTCCSHHHHHHHHHHHHHHHH
T ss_pred ----C--C-CCeeeECCCccCc-c-----------CCCCHHHHHHHhc--CCCeEEEecCCCCccChHHHHHHHHHHHHH
Confidence 0 1 2789999988764 2 3456788999987 46899999999864 456778889999999
Q ss_pred CCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCc
Q 042753 301 TDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 301 ~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P 380 (473)
.+.+++|+++... . +...+ ++|+.+.+|+||.++|+++++ ||||||+||+.||+++|||+|++|
T Consensus 266 ~~~~~v~~~g~~~----~-~~~~~---------~~~v~~~~~~~~~~ll~~~d~--~v~~~G~~t~~Ea~~~G~P~i~~p 329 (416)
T 1rrv_A 266 QGRRVILSRGWTE----L-VLPDD---------RDDCFAIDEVNFQALFRRVAA--VIHHGSAGTEHVATRAGVPQLVIP 329 (416)
T ss_dssp TTCCEEEECTTTT----C-CCSCC---------CTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECC
T ss_pred CCCeEEEEeCCcc----c-cccCC---------CCCEEEeccCChHHHhccCCE--EEecCChhHHHHHHHcCCCEEEcc
Confidence 9999999988753 0 01112 368899999999999988886 999999999999999999999999
Q ss_pred ccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 381 MDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 381 ~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
.+.||+.||+++++ +|+|+.++ ..+++.++|.++|+++ +|+ +|+++++++++.++ ..++. ++++.++++
T Consensus 330 ~~~dQ~~na~~l~~-~g~g~~~~---~~~~~~~~l~~~i~~l-~~~-~~~~~~~~~~~~~~----~~~~~-~~~~~i~e~ 398 (416)
T 1rrv_A 330 RNTDQPYFAGRVAA-LGIGVAHD---GPTPTFESLSAALTTV-LAP-ETRARAEAVAGMVL----TDGAA-AAADLVLAA 398 (416)
T ss_dssp CSBTHHHHHHHHHH-HTSEEECS---SSCCCHHHHHHHHHHH-TSH-HHHHHHHHHTTTCC----CCHHH-HHHHHHHHH
T ss_pred CCCCcHHHHHHHHH-CCCccCCC---CCCCCHHHHHHHHHHh-hCH-HHHHHHHHHHHHHh----hcCcH-HHHHHHHHH
Confidence 99999999999994 59999998 7789999999999999 986 99999999998884 34455 666665355
Q ss_pred HHhhccCC
Q 042753 461 INELKSGK 468 (473)
Q Consensus 461 ~~~~~~~~ 468 (473)
+.+..+..
T Consensus 399 ~~~~~~~~ 406 (416)
T 1rrv_A 399 VGREKPAV 406 (416)
T ss_dssp HHC-----
T ss_pred HhccCCCC
Confidence 55554433
No 10
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=100.00 E-value=3.4e-41 Score=336.23 Aligned_cols=386 Identities=17% Similarity=0.138 Sum_probs=262.7
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCC--------CC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAG--------SP 75 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~--------~~ 75 (473)
.|+||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... ++.+..++....... .+
T Consensus 19 ~m~rIl~~~~~~~GHv~p~l~La~~L~~~Gh~V~v~~~~~~~~~~~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~ 91 (415)
T 3rsc_A 19 HMAHLLIVNVASHGLILPTLTVVTELVRRGHRVSYVTAGGFAEPVRAA-------GATVVPYQSEIIDADAAEVFGSDDL 91 (415)
T ss_dssp CCCEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHT-------TCEEEECCCSTTTCCHHHHHHSSSS
T ss_pred cCCEEEEEeCCCccccccHHHHHHHHHHCCCEEEEEeCHHHHHHHHhc-------CCEEEeccccccccccchhhccccH
Confidence 389999999999999999999999999999999999998887777765 788888774311100 00
Q ss_pred hhhHHH-HHHHHHHHhhHHHHHHHhcCCCCCcEEEeC-CCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCC
Q 042753 76 ATRLLK-FMRVLRELHYPALLDWFKSHPSPPVAILSD-FFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTND 153 (473)
Q Consensus 76 ~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D-~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~ 153 (473)
...+.. +..... .....+.++++++ +||+||+| ....++..+|+++|||++.+.+....... +.+.
T Consensus 92 ~~~~~~~~~~~~~-~~~~~l~~~l~~~--~PDlVi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~-------~~~~-- 159 (415)
T 3rsc_A 92 GVRPHLMYLRENV-SVLRATAEALDGD--VPDLVLYDDFPFIAGQLLAARWRRPAVRLSAAFASNEH-------YSFS-- 159 (415)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHSSS--CCSEEEEESTTHHHHHHHHHHTTCCEEEEESSCCCCSS-------CCHH--
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcc--CCCEEEECchhhhHHHHHHHHhCCCEEEEEecccccCc-------cccc--
Confidence 111222 333333 4456788889999 99999999 77778889999999999998744321000 0000
Q ss_pred CCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcE
Q 042753 154 DPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRV 233 (473)
Q Consensus 154 ~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~ 233 (473)
....+...+..+.........+..+........... ... .......+......++ .....++ .++
T Consensus 160 ---~~~~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~----~~~--~~~~~~~l~~~~~~~~-----~~~~~~~-~~~ 224 (415)
T 3rsc_A 160 ---QDMVTLAGTIDPLDLPVFRDTLRDLLAEHGLSRSVV----DCW--NHVEQLNLVFVPKAFQ-----IAGDTFD-DRF 224 (415)
T ss_dssp ---HHHHHHHTCCCGGGCHHHHHHHHHHHHHTTCCCCHH----HHH--TCCCSEEEESSCTTTS-----TTGGGCC-TTE
T ss_pred ---cccccccccCChhhHHHHHHHHHHHHHHcCCCCChh----hhh--cCCCCeEEEEcCcccC-----CCcccCC-Cce
Confidence 000000000000000000000000010000000000 000 0001222322222222 2233456 689
Q ss_pred EEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCC
Q 042753 234 WAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPD 313 (473)
Q Consensus 234 ~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 313 (473)
.++||+.... . ...+|.....++++|||++||......+.+..+++++++.+.+++|.++.+.
T Consensus 225 ~~vGp~~~~~-~----------------~~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~ 287 (415)
T 3rsc_A 225 VFVGPCFDDR-R----------------FLGEWTRPADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQPWHVVMTLGGQV 287 (415)
T ss_dssp EECCCCCCCC-G----------------GGCCCCCCSSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSSCEEEEECTTTS
T ss_pred EEeCCCCCCc-c----------------cCcCccccCCCCCEEEEECCCCCCChHHHHHHHHHHHhcCCcEEEEEeCCCC
Confidence 9999987654 2 1122444345789999999999877778899999999998899999988642
Q ss_pred ccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHH
Q 042753 314 ERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLV 393 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 393 (473)
. .+.... .++|+++.+|+|+.++|+++++ +|||||+||+.||+++|+|+|++|...||+.||++++
T Consensus 288 -~--~~~l~~---------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l~ 353 (415)
T 3rsc_A 288 -D--PAALGD---------LPPNVEAHRWVPHVKVLEQATV--CVTHGGMGTLMEALYWGRPLVVVPQSFDVQPMARRVD 353 (415)
T ss_dssp -C--GGGGCC---------CCTTEEEESCCCHHHHHHHEEE--EEESCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHHH
T ss_pred -C--hHHhcC---------CCCcEEEEecCCHHHHHhhCCE--EEECCcHHHHHHHHHhCCCEEEeCCcchHHHHHHHHH
Confidence 0 001111 2368999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 394 DQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 394 ~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+. |+|+.+. .++++.++|.++|+++++|+ +++++++++++.+. .+++.+++++.+.+.+.+
T Consensus 354 ~~-g~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~ 414 (415)
T 3rsc_A 354 QL-GLGAVLP---GEKADGDTLLAAVGAVAADP-ALLARVEAMRGHVR----RAGGAARAADAVEAYLAR 414 (415)
T ss_dssp HH-TCEEECC---GGGCCHHHHHHHHHHHHTCH-HHHHHHHHHHHHHH----HSCHHHHHHHHHHHHHHH
T ss_pred Hc-CCEEEcc---cCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhc
Confidence 55 9999998 77889999999999999997 99999999999985 456788888888776653
No 11
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=100.00 E-value=3.6e-41 Score=334.44 Aligned_cols=362 Identities=17% Similarity=0.199 Sum_probs=253.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCC--CC---CChhhHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWP--AG---SPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~--~~---~~~~~~~ 80 (473)
|||+|++.++.||++|+++||++|+++||+|+|++++.+.+.++.. ++.|..++..... .. .......
T Consensus 1 MrIli~~~gt~Ghv~p~~~La~~L~~~Gh~V~v~~~~~~~~~v~~~-------g~~~~~l~~~~~~~~~~~~~~~~~~~~ 73 (404)
T 3h4t_A 1 MGVLITGCGSRGDTEPLVALAARLRELGADARMCLPPDYVERCAEV-------GVPMVPVGRAVRAGAREPGELPPGAAE 73 (404)
T ss_dssp -CEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEECGGGHHHHHHT-------TCCEEECSSCSSGGGSCTTCCCTTCGG
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCeEEEEeCHHHHHHHHHc-------CCceeecCCCHHHHhccccCCHHHHHH
Confidence 6899999999999999999999999999999999999888777766 7888888643210 00 0111111
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchH---HHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCC
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWT---QGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDN 157 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~---~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (473)
.+...+. .....+.+++ . +||+||+|.....+ ..+|+++|||++.+...+....+
T Consensus 74 ~~~~~~~-~~~~~l~~~~--~--~pD~Vi~~~~~~~~~~a~~~A~~lgiP~v~~~~~p~~~~~----------------- 131 (404)
T 3h4t_A 74 VVTEVVA-EWFDKVPAAI--E--GCDAVVTTGLLPAAVAVRSMAEKLGIPYRYTVLSPDHLPS----------------- 131 (404)
T ss_dssp GHHHHHH-HHHHHHHHHH--T--TCSEEEEEECHHHHHHHHHHHHHHTCCEEEEESSGGGSGG-----------------
T ss_pred HHHHHHH-HHHHHHHHHh--c--CCCEEEECCchhhhhhhhhHHhhcCCCEEEEEcCCccCCC-----------------
Confidence 1222222 2233344444 3 79999999775544 78999999999988776542000
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcE---------------EeecchHHhhHHHHH
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWG---------------IVFNSFAELERVYID 222 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~s~~~le~~~~~ 222 (473)
+.+ ......... ..++.+.+.........+ .+.+..+.+.+
T Consensus 132 -------~~~--------~~~~~~~~~-----~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~l~~~~~~l~p---- 187 (404)
T 3h4t_A 132 -------EQS--------QAERDMYNQ-----GADRLFGDAVNSHRASIGLPPVEHLYDYGYTDQPWLAADPVLSP---- 187 (404)
T ss_dssp -------GSC--------HHHHHHHHH-----HHHHHHHHHHHHHHHHTTCCCCCCHHHHHHCSSCEECSCTTTSC----
T ss_pred -------hhH--------HHHHHHHHH-----HHHHHhHHHHHHHHHHcCCCCCcchhhccccCCeEEeeCcceeC----
Confidence 000 000000000 000011000000000000 11111111211
Q ss_pred HHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042753 223 HMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTD 302 (473)
Q Consensus 223 ~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 302 (473)
...++ +++.++|++..+. . ...++++.+|++. ++++|||++||... ..+.+..+++++++.+
T Consensus 188 --~~~~~-~~~~~~G~~~~~~-~-----------~~~~~~l~~~l~~--~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~ 249 (404)
T 3h4t_A 188 --LRPTD-LGTVQTGAWILPD-Q-----------RPLSAELEGFLRA--GSPPVYVGFGSGPA-PAEAARVAIEAVRAQG 249 (404)
T ss_dssp --CCTTC-CSCCBCCCCCCCC-C-----------CCCCHHHHHHHHT--SSCCEEECCTTSCC-CTTHHHHHHHHHHHTT
T ss_pred --CCCCC-CCeEEeCccccCC-C-----------CCCCHHHHHHHhc--CCCeEEEECCCCCC-cHHHHHHHHHHHHhCC
Confidence 11244 5788899776554 2 4467889999986 67899999999977 6778899999999999
Q ss_pred CcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc
Q 042753 303 VDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 303 ~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~ 382 (473)
.++||+++... . +.+. ..+|+++.+|+||.++|+++++ +|||||+||+.||+++|||+|++|+.
T Consensus 250 ~~vv~~~g~~~----~---~~~~-------~~~~v~~~~~~~~~~ll~~~d~--~v~~gG~~t~~Eal~~GvP~v~~p~~ 313 (404)
T 3h4t_A 250 RRVVLSSGWAG----L---GRID-------EGDDCLVVGEVNHQVLFGRVAA--VVHHGGAGTTTAVTRAGAPQVVVPQK 313 (404)
T ss_dssp CCEEEECTTTT----C---CCSS-------CCTTEEEESSCCHHHHGGGSSE--EEECCCHHHHHHHHHHTCCEEECCCS
T ss_pred CEEEEEeCCcc----c---cccc-------CCCCEEEecCCCHHHHHhhCcE--EEECCcHHHHHHHHHcCCCEEEcCCc
Confidence 99999988753 0 1111 2478999999999999999887 99999999999999999999999999
Q ss_pred ccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 383 ADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
.||+.||+++++. |+|+.+. ..+++.++|.++|+++++ + +|+++++++++.+. + .+.+++++.+++.+.
T Consensus 314 ~dQ~~na~~~~~~-G~g~~l~---~~~~~~~~l~~ai~~ll~-~-~~~~~~~~~~~~~~----~-~~~~~~~~~i~~~~~ 382 (404)
T 3h4t_A 314 ADQPYYAGRVADL-GVGVAHD---GPTPTVESLSAALATALT-P-GIRARAAAVAGTIR----T-DGTTVAAKLLLEAIS 382 (404)
T ss_dssp TTHHHHHHHHHHH-TSEEECS---SSSCCHHHHHHHHHHHTS-H-HHHHHHHHHHTTCC----C-CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHC-CCEeccC---cCCCCHHHHHHHHHHHhC-H-HHHHHHHHHHHHHh----h-hHHHHHHHHHHHHHh
Confidence 9999999999955 9999998 788999999999999999 7 99999999999884 4 678888888877776
Q ss_pred hhc
Q 042753 463 ELK 465 (473)
Q Consensus 463 ~~~ 465 (473)
+.+
T Consensus 383 ~~~ 385 (404)
T 3h4t_A 383 RQR 385 (404)
T ss_dssp C--
T ss_pred hCC
Confidence 543
No 12
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=100.00 E-value=3.9e-40 Score=327.03 Aligned_cols=385 Identities=18% Similarity=0.171 Sum_probs=260.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC--CCCC---CCh--
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK--WPAG---SPA-- 76 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~--~~~~---~~~-- 76 (473)
.|+||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... ++++..++... .... ...
T Consensus 3 ~M~~il~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~ 75 (402)
T 3ia7_A 3 RQRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTTPLFADEVKAA-------GAEVVLYKSEFDTFHVPEVVKQEDA 75 (402)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHT-------TCEEEECCCGGGTSSSSSSSCCTTH
T ss_pred CCCEEEEEeCCCCcccccHHHHHHHHHhCCCEEEEEcCHHHHHHHHHc-------CCEEEecccccccccccccccccch
Confidence 378999999999999999999999999999999999998777777655 68888876421 1110 011
Q ss_pred -hhHHH-HHHHHHHHhhHHHHHHHhcCCCCCcEEEeC-CCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCC
Q 042753 77 -TRLLK-FMRVLRELHYPALLDWFKSHPSPPVAILSD-FFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTND 153 (473)
Q Consensus 77 -~~~~~-~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D-~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~ 153 (473)
..+.. +..... .....+.+++++. +||+||+| ....++..+|+++|||+|.+.+........... ..
T Consensus 76 ~~~~~~~~~~~~~-~~~~~l~~~l~~~--~pD~Vi~d~~~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~-~~------ 145 (402)
T 3ia7_A 76 ETQLHLVYVRENV-AILRAAEEALGDN--PPDLVVYDVFPFIAGRLLAARWDRPAVRLTGGFAANEHYSLF-KE------ 145 (402)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHTTC--CCSEEEEESTTHHHHHHHHHHHTCCEEEEESSCCCBTTBCHH-HH------
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhcc--CCCEEEECchHHHHHHHHHHhhCCCEEEEecccccCcccccc-cc------
Confidence 12222 223333 4456788889999 99999999 777788899999999999986443210000000 00
Q ss_pred CCCCCCccccCCCCCC-CCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCc
Q 042753 154 DPDNVDALVSFPRVPN-CPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR 232 (473)
Q Consensus 154 ~~~~~~~~~~~p~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~ 232 (473)
. ......... ........+..+........ .. ...... .....+...-.+++ .....++ .+
T Consensus 146 -----~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~---~~~~~~--~~~~~l~~~~~~~~-----~~~~~~~-~~ 207 (402)
T 3ia7_A 146 -----L-WKSNGQRHPADVEAVHSVLVDLLGKYGVDT-PV---KEYWDE--IEGLTIVFLPKSFQ-----PFAETFD-ER 207 (402)
T ss_dssp -----H-HHHHTCCCGGGSHHHHHHHHHHHHTTTCCS-CH---HHHHTC--CCSCEEESSCGGGS-----TTGGGCC-TT
T ss_pred -----c-cccccccChhhHHHHHHHHHHHHHHcCCCC-Ch---hhhhcC--CCCeEEEEcChHhC-----CccccCC-CC
Confidence 0 000000000 00000000000111000000 00 000000 00222222222222 2223456 68
Q ss_pred EEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 233 VWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 233 ~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
+.++||+.... . ...+|.....++++|||++||......+.+..+++++++.+.+++|.++.+
T Consensus 208 ~~~vGp~~~~~-~----------------~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 270 (402)
T 3ia7_A 208 FAFVGPTLTGR-D----------------GQPGWQPPRPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGF 270 (402)
T ss_dssp EEECCCCCCC---------------------CCCCCSSTTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTT
T ss_pred eEEeCCCCCCc-c----------------cCCCCcccCCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCc
Confidence 99999987654 2 111244334578999999999987777889999999998889999988864
Q ss_pred CccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc-cccchhhHHH
Q 042753 313 DERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM-DADQYTNAQL 391 (473)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~-~~DQ~~na~r 391 (473)
. . .+.+.. .++|+.+.+|+|+.++|+++++ +|||||+||+.||+++|+|+|++|. ..||+.|+.+
T Consensus 271 ~----~--~~~~~~------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~ 336 (402)
T 3ia7_A 271 L----D--PAVLGP------LPPNVEAHQWIPFHSVLAHARA--CLTHGTTGAVLEAFAAGVPLVLVPHFATEAAPSAER 336 (402)
T ss_dssp S----C--GGGGCS------CCTTEEEESCCCHHHHHTTEEE--EEECCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHH
T ss_pred C----C--hhhhCC------CCCcEEEecCCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHH
Confidence 2 0 011111 2468999999999999999997 9999999999999999999999999 9999999999
Q ss_pred HHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 392 LVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 392 v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+++. |+|+.+. .++++.+.|.++|+++++|+ +++++++++++.+. .+++.+++++.+.+.+.+
T Consensus 337 ~~~~-g~g~~~~---~~~~~~~~l~~~~~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 337 VIEL-GLGSVLR---PDQLEPASIREAVERLAADS-AVRERVRRMQRDIL----SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHT-TSEEECC---GGGCSHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred HHHc-CCEEEcc---CCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHh----hCChHHHHHHHHHHHHhh
Confidence 9955 9999998 77889999999999999997 99999999999884 456788888888877754
No 13
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=100.00 E-value=1.4e-38 Score=319.59 Aligned_cols=372 Identities=15% Similarity=0.079 Sum_probs=243.4
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-CC----------
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-PA---------- 72 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-~~---------- 72 (473)
.|+||+|++.++.||++|+++||++|+++||+|+|++++.+.+.+... +++|..++.... .+
T Consensus 19 ~~mrIl~~~~~~~GHv~p~l~la~~L~~~GheV~~~~~~~~~~~v~~~-------G~~~~~i~~~~~~~~~~~~~~~~~~ 91 (441)
T 2yjn_A 19 SHMRVVFSSMASKSHLFGLVPLAWAFRAAGHEVRVVASPALTEDITAA-------GLTAVPVGTDVDLVDFMTHAGHDII 91 (441)
T ss_dssp CCCEEEEECCSCHHHHTTTHHHHHHHHHTTCEEEEEECGGGHHHHHTT-------TCCEEECSCCCCHHHHHHHTTHHHH
T ss_pred CccEEEEEcCCCcchHhHHHHHHHHHHHCCCeEEEEeCchhHHHHHhC-------CCceeecCCccchHHHhhhhhcccc
Confidence 589999999999999999999999999999999999998876666654 788888874310 00
Q ss_pred -----CC-----Ch-hhHH---HHHHHHHH--------H-hhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcE
Q 042753 73 -----GS-----PA-TRLL---KFMRVLRE--------L-HYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRV 129 (473)
Q Consensus 73 -----~~-----~~-~~~~---~~~~~~~~--------~-~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v 129 (473)
.. +. ..+. .....+.. . ....+.++++++ +||+||+|....++..+|+.+|||+|
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~~~~~~~~aA~~lgiP~v 169 (441)
T 2yjn_A 92 DYVRSLDFSERDPATLTWEHLLGMQTVLTPTFYALMSPDTLIEGMVSFCRKW--RPDLVIWEPLTFAAPIAAAVTGTPHA 169 (441)
T ss_dssp HHHTTCCCTTCCGGGGSHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHH--CCSEEEECTTCTHHHHHHHHHTCCEE
T ss_pred cccccccccccCcchhhhhhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc--CCCEEEecCcchhHHHHHHHcCCCEE
Confidence 00 10 0111 11111111 1 345566677788 99999999987788999999999999
Q ss_pred EEecchHHHHHHHHhhhccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhcc------
Q 042753 130 VFSPSGAFALSVSFAMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANK------ 203 (473)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 203 (473)
.+...+............. +...|... . .. ...+.+.+......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~----~-~~-------------~~~~~l~~~~~~~g~~~~~~ 219 (441)
T 2yjn_A 170 RLLWGPDITTRARQNFLGL------------LPDQPEEH----R-ED-------------PLAEWLTWTLEKYGGPAFDE 219 (441)
T ss_dssp EECSSCCHHHHHHHHHHHH------------GGGSCTTT----C-CC-------------HHHHHHHHHHHHTTCCCCCG
T ss_pred EEecCCCcchhhhhhhhhh------------cccccccc----c-cc-------------hHHHHHHHHHHHcCCCCCCc
Confidence 9865432211110000000 00000000 0 00 01111111111110
Q ss_pred ---CCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEe
Q 042753 204 ---TSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCF 280 (473)
Q Consensus 204 ---~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~ 280 (473)
.....+..+.+.++.+ ..++ . ..+++.... .+.++.+|++..+++++|||++
T Consensus 220 ~~~~~~~~l~~~~~~~~~~------~~~~--~-~~~~~~~~~----------------~~~~~~~~l~~~~~~~~v~v~~ 274 (441)
T 2yjn_A 220 EVVVGQWTIDPAPAAIRLD------TGLK--T-VGMRYVDYN----------------GPSVVPEWLHDEPERRRVCLTL 274 (441)
T ss_dssp GGTSCSSEEECSCGGGSCC------CCCC--E-EECCCCCCC----------------SSCCCCGGGSSCCSSCEEEEEC
T ss_pred cccCCCeEEEecCccccCC------CCCC--C-CceeeeCCC----------------CCcccchHhhcCCCCCEEEEEC
Confidence 0111122221112110 0111 0 122222111 1234557887656789999999
Q ss_pred CCcccC---CHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccce
Q 042753 281 GSRYVL---TAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAF 357 (473)
Q Consensus 281 Gs~~~~---~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ 357 (473)
||.... ..+.+..+++++++.+.+++|+++... . +.+.. .++|+.+.+|+||.++|+++++ |
T Consensus 275 Gs~~~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~----~---~~l~~------~~~~v~~~~~~~~~~ll~~ad~--~ 339 (441)
T 2yjn_A 275 GISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQ----L---EGVAN------IPDNVRTVGFVPMHALLPTCAA--T 339 (441)
T ss_dssp ----------CCSTTTTHHHHHTSSSEEEECCCTTT----T---SSCSS------CCSSEEECCSCCHHHHGGGCSE--E
T ss_pred CCCcccccChHHHHHHHHHHHHcCCCEEEEEECCcc----h---hhhcc------CCCCEEEecCCCHHHHHhhCCE--E
Confidence 998753 345677789999989999999988642 1 11211 2368999999999999999987 9
Q ss_pred eeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHH
Q 042753 358 LTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELS 437 (473)
Q Consensus 358 ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~ 437 (473)
|||||+||+.||+++|||+|++|...||+.||+++++. |+|+.+. ..+++.++|.++|+++++|+ ++++++++++
T Consensus 340 V~~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l~~~-g~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~ 414 (441)
T 2yjn_A 340 VHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEF-GAGIALP---VPELTPDQLRESVKRVLDDP-AHRAGAARMR 414 (441)
T ss_dssp EECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHHH-TSEEECC---TTTCCHHHHHHHHHHHHHCH-HHHHHHHHHH
T ss_pred EECCCHHHHHHHHHhCCCEEEeCCcccHHHHHHHHHHc-CCEEEcc---cccCCHHHHHHHHHHHhcCH-HHHHHHHHHH
Confidence 99999999999999999999999999999999999955 9999998 77899999999999999997 9999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 438 GAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 438 ~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+.+. ..++.++.++.+.+.+.+
T Consensus 415 ~~~~----~~~~~~~~~~~i~~~~~~ 436 (441)
T 2yjn_A 415 DDML----AEPSPAEVVGICEELAAG 436 (441)
T ss_dssp HHHH----TSCCHHHHHHHHHHHHHC
T ss_pred HHHH----cCCCHHHHHHHHHHHHHh
Confidence 9985 456677777777776654
No 14
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=100.00 E-value=9.3e-38 Score=312.85 Aligned_cols=383 Identities=19% Similarity=0.216 Sum_probs=253.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCC------Ch--
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGS------PA-- 76 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~------~~-- 76 (473)
|+||++++.++.||++|+++|+++|.++||+|++++++.+.+.+... ++++..++........ ..
T Consensus 7 m~kIl~~~~~~~Gh~~p~~~la~~L~~~G~~V~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (430)
T 2iyf_A 7 PAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAAT-------GPRPVLYHSTLPGPDADPEAWGSTLL 79 (430)
T ss_dssp -CEEEEECCSCHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHTT-------SCEEEECCCCSCCTTSCGGGGCSSHH
T ss_pred cceEEEEeCCCCccccchHHHHHHHHHCCCeEEEEeCHHHHHHHHhC-------CCEEEEcCCcCccccccccccchhhH
Confidence 57999999999999999999999999999999999998776655544 6888877643111111 01
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCC
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPD 156 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~ 156 (473)
..+..+...+. .....+.+++++. +||+||+|...+++..+|+++|||+|.+++.............. +. .
T Consensus 80 ~~~~~~~~~~~-~~~~~l~~~l~~~--~pD~Vi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~--~~----~ 150 (430)
T 2iyf_A 80 DNVEPFLNDAI-QALPQLADAYADD--IPDLVLHDITSYPARVLARRWGVPAVSLSPNLVAWKGYEEEVAE--PM----W 150 (430)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHTTS--CCSEEEEETTCHHHHHHHHHHTCCEEEEESSCCCCTTHHHHTHH--HH----H
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhcc--CCCEEEECCccHHHHHHHHHcCCCEEEEeccccccccccccccc--ch----h
Confidence 11111222222 4456788888888 99999999887788999999999999987654210000000000 00 0
Q ss_pred CCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCc-EEE
Q 042753 157 NVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDR-VWA 235 (473)
Q Consensus 157 ~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~-~~~ 235 (473)
......+++. .....+..++......... . ........++.++..+++... ..++ ++ +++
T Consensus 151 --~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~----~---~~~~~~~~~l~~~~~~~~~~~-----~~~~-~~~v~~ 211 (430)
T 2iyf_A 151 --REPRQTERGR----AYYARFEAWLKENGITEHP----D---TFASHPPRSLVLIPKALQPHA-----DRVD-EDVYTF 211 (430)
T ss_dssp --HHHHHSHHHH----HHHHHHHHHHHHTTCCSCH----H---HHHHCCSSEEECSCGGGSTTG-----GGSC-TTTEEE
T ss_pred --hhhccchHHH----HHHHHHHHHHHHhCCCCCH----H---HHhcCCCcEEEeCcHHhCCCc-----ccCC-CccEEE
Confidence 0000000000 0000000000000000000 0 011124556677766665421 2355 67 999
Q ss_pred eccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEEeCCCc
Q 042753 236 VGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT-DVDFVYCVREPDE 314 (473)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~ 314 (473)
+||.+... . . ..+|.+...++++|||++||......+.+..+++++++. +.+++|.++...
T Consensus 212 vG~~~~~~-~-----------~-----~~~~~~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~- 273 (430)
T 2iyf_A 212 VGACQGDR-A-----------E-----EGGWQRPAGAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKV- 273 (430)
T ss_dssp CCCCC----------------------CCCCCCCTTCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC----
T ss_pred eCCcCCCC-C-----------C-----CCCCccccCCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCC-
Confidence 99865433 1 0 012444334678999999999855678888899999885 888989887642
Q ss_pred cCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHH
Q 042753 315 RHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD 394 (473)
Q Consensus 315 ~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~ 394 (473)
. .+.+. + .++|+.+.+|+||.++|+++++ ||||||+||++||+++|+|+|++|...||..|++++++
T Consensus 274 ---~------~~~l~-~-~~~~v~~~~~~~~~~~l~~ad~--~v~~~G~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~~~ 340 (430)
T 2iyf_A 274 ---T------PAELG-E-LPDNVEVHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQG 340 (430)
T ss_dssp ---C------GGGGC-S-CCTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHTTCCEEECCCSHHHHHHHHHHHH
T ss_pred ---C------hHHhc-c-CCCCeEEEecCCHHHHhhccCE--EEECCCccHHHHHHHhCCCEEECCCccchHHHHHHHHH
Confidence 0 01111 0 2368999999999999999997 99999999999999999999999999999999999995
Q ss_pred HhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 395 QLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 395 ~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
.|+|+.+. .++++.++|.++|+++++|+ ++++++++.++.+.+ .++.++.++.+++.+.
T Consensus 341 -~g~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~ 399 (430)
T 2iyf_A 341 -LGVARKLA---TEEATADLLRETALALVDDP-EVARRLRRIQAEMAQ----EGGTRRAADLIEAELP 399 (430)
T ss_dssp -TTSEEECC---CC-CCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHH----HCHHHHHHHHHHTTSC
T ss_pred -cCCEEEcC---CCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHHh----cCcHHHHHHHHHHHhh
Confidence 59999998 77889999999999999997 999999999988863 2456777776665543
No 15
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=100.00 E-value=5.9e-37 Score=302.39 Aligned_cols=358 Identities=15% Similarity=0.130 Sum_probs=248.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-C-------CCC---
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-P-------AGS--- 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-~-------~~~--- 74 (473)
|||++++.++.||++|+++|+++|.++||+|++++++.+.+.+... ++.+..++.... . ..+
T Consensus 1 MrIl~~~~~~~Gh~~p~~~la~~L~~~Gh~V~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (384)
T 2p6p_A 1 MRILFVAAGSPATVFALAPLATAARNAGHQVVMAANQDMGPVVTGV-------GLPAVATTDLPIRHFITTDREGRPEAI 73 (384)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHT-------TCCEEESCSSCHHHHHHBCTTSCBCCC
T ss_pred CEEEEEeCCccchHhHHHHHHHHHHHCCCEEEEEeCHHHHHHHHhC-------CCEEEEeCCcchHHHHhhhcccCcccc
Confidence 5899999999999999999999999999999999998766555544 677887764210 0 010
Q ss_pred -Ch-hhHHHH----HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhcc
Q 042753 75 -PA-TRLLKF----MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTD 148 (473)
Q Consensus 75 -~~-~~~~~~----~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 148 (473)
+. .....+ ...........+.+++++. +||+||+|....++..+|+.+|||+|.+...+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pD~Vi~~~~~~~~~~~a~~~giP~v~~~~~~~~----------- 140 (384)
T 2p6p_A 74 PSDPVAQARFTGRWFARMAASSLPRMLDFSRAW--RPDLIVGGTMSYVAPLLALHLGVPHARQTWDAVD----------- 140 (384)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCC-----------
T ss_pred CcchHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CCcEEEECcchhhHHHHHHhcCCCEEEeccCCcc-----------
Confidence 11 111111 1111113356677888888 9999999988778889999999999987532110
Q ss_pred CCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhh-hccCCcEEeecchHHhhHHHHHHHHHh
Q 042753 149 LPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMM-ANKTSWGIVFNSFAELERVYIDHMKKE 227 (473)
Q Consensus 149 ~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~le~~~~~~~~~~ 227 (473)
..+ . ...+.. ...+...+... .......++.++...++.+. .
T Consensus 141 ---------------~~~------~-----~~~~~~-----~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~------~ 183 (384)
T 2p6p_A 141 ---------------ADG------I-----HPGADA-----ELRPELSELGLERLPAPDLFIDICPPSLRPAN------A 183 (384)
T ss_dssp ---------------CTT------T-----HHHHHH-----HTHHHHHHTTCSSCCCCSEEEECSCGGGSCTT------S
T ss_pred ---------------cch------h-----hHHHHH-----HHHHHHHHcCCCCCCCCCeEEEECCHHHCCCC------C
Confidence 000 0 000000 00111111100 00113445666655444210 0
Q ss_pred hCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccC-----CHHHHHHHHHHHHhCC
Q 042753 228 MGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVL-----TAKQIHELAAALEKTD 302 (473)
Q Consensus 228 ~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~-----~~~~~~~~~~al~~~~ 302 (473)
++.+++.+++ ... +.++.+|++.++++++|||++||.... +.+.+..+++++++.+
T Consensus 184 ~~~~~~~~~~---~~~----------------~~~~~~~l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~~ 244 (384)
T 2p6p_A 184 APARMMRHVA---TSR----------------QCPLEPWMYTRDTRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRWD 244 (384)
T ss_dssp CCCEECCCCC---CCC----------------CCBCCHHHHCCCSSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTTT
T ss_pred CCCCceEecC---CCC----------------CCCCCchhhcCCCCCEEEEECCCCCccccccccHHHHHHHHHHHhcCC
Confidence 1101222221 111 123456887645678999999999764 4577888999999999
Q ss_pred CcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc
Q 042753 303 VDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 303 ~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~ 382 (473)
.+++|+++.+. .+.+.+ .++|+.+ +|+||.++|+++++ ||||||+||+.||+++|+|+|++|..
T Consensus 245 ~~~~~~~g~~~-----------~~~l~~--~~~~v~~-~~~~~~~~l~~~d~--~v~~~G~~t~~Ea~~~G~P~v~~p~~ 308 (384)
T 2p6p_A 245 VELIVAAPDTV-----------AEALRA--EVPQARV-GWTPLDVVAPTCDL--LVHHAGGVSTLTGLSAGVPQLLIPKG 308 (384)
T ss_dssp CEEEEECCHHH-----------HHHHHH--HCTTSEE-ECCCHHHHGGGCSE--EEECSCTTHHHHHHHTTCCEEECCCS
T ss_pred cEEEEEeCCCC-----------HHhhCC--CCCceEE-cCCCHHHHHhhCCE--EEeCCcHHHHHHHHHhCCCEEEccCc
Confidence 99999987531 011211 2468899 99999999999887 99999999999999999999999999
Q ss_pred ccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 383 ADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
.||+.||.++++ .|+|+.++ .++++.++|.++|+++++|+ +++++++++++.++ ..++.+++++.+.+.+.
T Consensus 309 ~dq~~~a~~~~~-~g~g~~~~---~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 309 SVLEAPARRVAD-YGAAIALL---PGEDSTEAIADSCQELQAKD-TYARRAQDLSREIS----GMPLPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHHH-HTSEEECC---TTCCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH----TSCCHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHH-CCCeEecC---cCCCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH----hCCCHHHHHHHHHHHhh
Confidence 999999999994 59999998 77889999999999999997 99999999999995 45678888888887776
Q ss_pred hh
Q 042753 463 EL 464 (473)
Q Consensus 463 ~~ 464 (473)
.+
T Consensus 380 ~~ 381 (384)
T 2p6p_A 380 HH 381 (384)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 16
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=100.00 E-value=1.6e-35 Score=293.59 Aligned_cols=351 Identities=17% Similarity=0.166 Sum_probs=238.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC--------------
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW-------------- 70 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~-------------- 70 (473)
||||+|++.++.||++|+++|+++|.++||+|+++++ .+.+.+... ++.+..++....
T Consensus 20 ~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~-~~~~~~~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (398)
T 3oti_A 20 HMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA-EHADRAAAA-------GLEVVDVAPDYSAVKVFEQVAKDNPR 91 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES-SCHHHHHTT-------TCEEEESSTTCCHHHHHHHHHHHCHH
T ss_pred cCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc-chHHHHHhC-------CCeeEecCCccCHHHHhhhcccCCcc
Confidence 6899999999999999999999999999999999999 777777655 788888774210
Q ss_pred -------CCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHH
Q 042753 71 -------PAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSF 143 (473)
Q Consensus 71 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 143 (473)
........+..++..........+.++++++ +||+||+|...+++..+|+.+|||+|.........
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDlVv~d~~~~~~~~aA~~~giP~v~~~~~~~~~----- 164 (398)
T 3oti_A 92 FAETVATRPAIDLEEWGVQIAAVNRPLVDGTMALVDDY--RPDLVVYEQGATVGLLAADRAGVPAVQRNQSAWRT----- 164 (398)
T ss_dssp HHHTGGGSCCCSGGGGHHHHHHHHGGGHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHTCCEEEECCTTCCC-----
T ss_pred ccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEECchhhHHHHHHHHcCCCEEEEeccCCCc-----
Confidence 0000011112222222225567888999999 99999999888888999999999999864331100
Q ss_pred hhhccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHH
Q 042753 144 AMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDH 223 (473)
Q Consensus 144 ~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~ 223 (473)
. . ..... .....+.+.+...........+......+..+
T Consensus 165 -------------------------~---~----~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 203 (398)
T 3oti_A 165 -------------------------R---G----MHRSI-----ASFLTDLMDKHQVSLPEPVATIESFPPSLLLE---- 203 (398)
T ss_dssp -------------------------T---T----HHHHH-----HTTCHHHHHHTTCCCCCCSEEECSSCGGGGTT----
T ss_pred -------------------------c---c----hhhHH-----HHHHHHHHHHcCCCCCCCCeEEEeCCHHHCCC----
Confidence 0 0 00000 00011111111111111122221111111110
Q ss_pred HHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccC--CHHHHHHHHHHHHhC
Q 042753 224 MKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVL--TAKQIHELAAALEKT 301 (473)
Q Consensus 224 ~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~--~~~~~~~~~~al~~~ 301 (473)
..... ..+.++ | ...+..+.+|+....++++|||++||.... ..+.+..+++++++.
T Consensus 204 -~~~~~-~~~~~~-~------------------~~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~ 262 (398)
T 3oti_A 204 -AEPEG-WFMRWV-P------------------YGGGAVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPIIAAAGEV 262 (398)
T ss_dssp -SCCCS-BCCCCC-C------------------CCCCEECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS
T ss_pred -CCCCC-CCcccc-C------------------CCCCcCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC
Confidence 00000 001111 0 011123345666556789999999999543 567788899999999
Q ss_pred CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcc
Q 042753 302 DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPM 381 (473)
Q Consensus 302 ~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~ 381 (473)
+.+++|+.+.+. ....+.+ ++|+.+.+|+|+.++|+++++ ||||||.||+.||+++|+|+|++|.
T Consensus 263 ~~~~v~~~g~~~----~~~l~~~---------~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Eal~~G~P~v~~p~ 327 (398)
T 3oti_A 263 DADFVLALGDLD----ISPLGTL---------PRNVRAVGWTPLHTLLRTCTA--VVHHGGGGTVMTAIDAGIPQLLAPD 327 (398)
T ss_dssp SSEEEEECTTSC----CGGGCSC---------CTTEEEESSCCHHHHHTTCSE--EEECCCHHHHHHHHHHTCCEEECCC
T ss_pred CCEEEEEECCcC----hhhhccC---------CCcEEEEccCCHHHHHhhCCE--EEECCCHHHHHHHHHhCCCEEEcCC
Confidence 999999988753 1111112 368999999999999999997 9999999999999999999999999
Q ss_pred cccchhhH--HHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHH
Q 042753 382 DADQYTNA--QLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIK 459 (473)
Q Consensus 382 ~~DQ~~na--~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~ 459 (473)
..||..|+ .++++. |+|+.++ ..+.+++.|. ++++|+ ++++++++.++.+. ...+.++.++.+++
T Consensus 328 ~~dq~~~a~~~~~~~~-g~g~~~~---~~~~~~~~l~----~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~l~~ 394 (398)
T 3oti_A 328 PRDQFQHTAREAVSRR-GIGLVST---SDKVDADLLR----RLIGDE-SLRTAAREVREEMV----ALPTPAETVRRIVE 394 (398)
T ss_dssp TTCCSSCTTHHHHHHH-TSEEECC---GGGCCHHHHH----HHHHCH-HHHHHHHHHHHHHH----TSCCHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHC-CCEEeeC---CCCCCHHHHH----HHHcCH-HHHHHHHHHHHHHH----hCCCHHHHHHHHHH
Confidence 99999999 999955 9999998 6777888776 888897 99999999999985 44566766666655
Q ss_pred H
Q 042753 460 R 460 (473)
Q Consensus 460 ~ 460 (473)
.
T Consensus 395 l 395 (398)
T 3oti_A 395 R 395 (398)
T ss_dssp H
T ss_pred H
Confidence 4
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=100.00 E-value=3.6e-36 Score=298.23 Aligned_cols=355 Identities=19% Similarity=0.115 Sum_probs=226.0
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCC-------------
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKW------------- 70 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~------------- 70 (473)
.+|||+|++.++.||++|+++|+++|.++||+|++++++.+.+.+... ++.+..++....
T Consensus 14 ~~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~-------G~~~~~~~~~~~~~~~~~~~~~~~~ 86 (398)
T 4fzr_A 14 SHMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGA-------GLPFAPTCPSLDMPEVLSWDREGNR 86 (398)
T ss_dssp -CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHT-------TCCEEEEESSCCHHHHHSBCTTSCB
T ss_pred CceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhC-------CCeeEecCCccchHhhhhhhccCcc
Confidence 478999999999999999999999999999999999998777777665 677776652100
Q ss_pred CCCCCh--hhHH---HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhh
Q 042753 71 PAGSPA--TRLL---KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAM 145 (473)
Q Consensus 71 ~~~~~~--~~~~---~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~ 145 (473)
...+.. ..+. .++..........+.++++++ +||+||+|...+++..+|+.+|||+|.+..............
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~~~~~~~~~a~~~giP~v~~~~~~~~~~~~~~~~ 164 (398)
T 4fzr_A 87 TTMPREEKPLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTETYSLTGPLVAATLGIPWIEQSIRLASPELIKSAG 164 (398)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCTHHHHHHHHHTCCEEEECCSSCCCHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECccccHHHHHHHhhCCCEEEeccCCCCchhhhHHH
Confidence 001100 1111 111111224456788889999 999999998777889999999999998754421100000000
Q ss_pred hccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhh-hccCCcEEeecchHHhhHHHHHHH
Q 042753 146 WTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMM-ANKTSWGIVFNSFAELERVYIDHM 224 (473)
Q Consensus 146 ~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~le~~~~~~~ 224 (473)
. .. ..+.+.+... ........+......+....
T Consensus 165 ~---------------------------------~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 198 (398)
T 4fzr_A 165 V---------------------------------GE---------LAPELAELGLTDFPDPLLSIDVCPPSMEAQP---- 198 (398)
T ss_dssp H---------------------------------HH---------THHHHHTTTCSSCCCCSEEEECSCGGGC-------
T ss_pred H---------------------------------HH---------HHHHHHHcCCCCCCCCCeEEEeCChhhCCCC----
Confidence 0 00 0000000000 00011112222212222110
Q ss_pred HHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccC--------CHHHHHHHHH
Q 042753 225 KKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVL--------TAKQIHELAA 296 (473)
Q Consensus 225 ~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~--------~~~~~~~~~~ 296 (473)
. .....+...... ....++.+|+....++++|||++||.... ..+.+..+++
T Consensus 199 -~----~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~ 258 (398)
T 4fzr_A 199 -K----PGTTKMRYVPYN---------------GRNDQVPSWVFEERKQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQ 258 (398)
T ss_dssp ------CCCEECCCCCCC---------------CSSCCCCHHHHSCCSSCEEECC----------------CCSHHHHHH
T ss_pred -C----CCCCCeeeeCCC---------------CCCCCCchhhhcCCCCCEEEEEccCcccccccccccchHHHHHHHHH
Confidence 0 111111111111 01223446776656789999999999643 3456788999
Q ss_pred HHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeE
Q 042753 297 ALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVM 376 (473)
Q Consensus 297 al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~ 376 (473)
++++.+.+++|+.+... . +.+.. .++|+++.+|+|+.++|+++++ ||||||.||+.||+++|+|+
T Consensus 259 al~~~~~~~v~~~~~~~----~---~~l~~------~~~~v~~~~~~~~~~ll~~ad~--~v~~gG~~t~~Ea~~~G~P~ 323 (398)
T 4fzr_A 259 ELPKLGFEVVVAVSDKL----A---QTLQP------LPEGVLAAGQFPLSAIMPACDV--VVHHGGHGTTLTCLSEGVPQ 323 (398)
T ss_dssp HGGGGTCEEEECCCC---------------------CCTTEEEESCCCHHHHGGGCSE--EEECCCHHHHHHHHHTTCCE
T ss_pred HHHhCCCEEEEEeCCcc----h---hhhcc------CCCcEEEeCcCCHHHHHhhCCE--EEecCCHHHHHHHHHhCCCE
Confidence 99988999999888752 0 11111 2478999999999999999997 99999999999999999999
Q ss_pred ecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042753 377 LTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLND 456 (473)
Q Consensus 377 l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~ 456 (473)
|++|...||+.|+.++++. |+|+.+. .++++.+.|.++|+++++|+ ++++++++.++.+. ...+.++.++.
T Consensus 324 v~~p~~~~q~~~a~~~~~~-g~g~~~~---~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~ 394 (398)
T 4fzr_A 324 VSVPVIAEVWDSARLLHAA-GAGVEVP---WEQAGVESVLAACARIRDDS-SYVGNARRLAAEMA----TLPTPADIVRL 394 (398)
T ss_dssp EECCCSGGGHHHHHHHHHT-TSEEECC----------CHHHHHHHHHHCT-HHHHHHHHHHHHHT----TSCCHHHHHHH
T ss_pred EecCCchhHHHHHHHHHHc-CCEEecC---cccCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH----cCCCHHHHHHH
Confidence 9999999999999999955 9999998 77889999999999999997 99999999999984 45556665555
Q ss_pred H
Q 042753 457 F 457 (473)
Q Consensus 457 ~ 457 (473)
+
T Consensus 395 l 395 (398)
T 4fzr_A 395 I 395 (398)
T ss_dssp H
T ss_pred H
Confidence 4
No 18
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=100.00 E-value=2.8e-34 Score=283.93 Aligned_cols=357 Identities=17% Similarity=0.142 Sum_probs=236.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEc-CCCCC------CCCC----
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVL-PQPKW------PAGS---- 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l-~~~~~------~~~~---- 74 (473)
|||+|++.++.||++|+++|+++|.++||+|++++++...+.+... ++.+..+ +.+.. ...+
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGA-------GLTTAGIRGNDRTGDTGGTTQLRFPNP 74 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHB-------TCEEEEC--------------CCSCCG
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhC-------CCceeeecCCccchhhhhhhccccccc
Confidence 6999999999999999999999999999999999987666666554 6777766 32110 0000
Q ss_pred -----ChhhHHHHHHHHHHHh-------hHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHH
Q 042753 75 -----PATRLLKFMRVLRELH-------YPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVS 142 (473)
Q Consensus 75 -----~~~~~~~~~~~~~~~~-------~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~ 142 (473)
....+...+......+ ...+.++++++ +||+||+|...+.+..+|+.+|||++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~~~~~~~~aa~~~giP~v~~~~~~~~~---- 148 (391)
T 3tsa_A 75 AFGQRDTEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDVCALIGRVLGGLLDLPVVLHRWGVDPT---- 148 (391)
T ss_dssp GGGCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHTTCCEEEECCSCCCT----
T ss_pred ccccccchhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCcchhHHHHHHHHhCCCEEEEecCCccc----
Confidence 0011111222212133 66788999999 99999999877778889999999999875332100
Q ss_pred HhhhccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhc-cCCcEEeecchHHhhHHHH
Q 042753 143 FAMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMAN-KTSWGIVFNSFAELERVYI 221 (473)
Q Consensus 143 ~~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~le~~~~ 221 (473)
.......... ...+.+.+..... ......+..+..+++..
T Consensus 149 --------------------------------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 189 (391)
T 3tsa_A 149 --------------------------------AGPFSDRAHE-----LLDPVCRHHGLTGLPTPELILDPCPPSLQAS-- 189 (391)
T ss_dssp --------------------------------TTHHHHHHHH-----HHHHHHHHTTSSSSCCCSEEEECSCGGGSCT--
T ss_pred --------------------------------cccccchHHH-----HHHHHHHHcCCCCCCCCceEEEecChhhcCC--
Confidence 0000000000 0000011100000 00112222221222110
Q ss_pred HHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc--CC-HHHHHHHHHHH
Q 042753 222 DHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV--LT-AKQIHELAAAL 298 (473)
Q Consensus 222 ~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~--~~-~~~~~~~~~al 298 (473)
..... ..+.++ |. ..+..+..|+....++++|||++||... .. .+.+..++++
T Consensus 190 ---~~~~~-~~~~~~-p~------------------~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~- 245 (391)
T 3tsa_A 190 ---DAPQG-APVQYV-PY------------------NGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRAVAAA- 245 (391)
T ss_dssp ---TSCCC-EECCCC-CC------------------CCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHHHHHH-
T ss_pred ---CCCcc-CCeeee-cC------------------CCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHHHHHh-
Confidence 00000 011122 11 0112334577655678999999999843 34 7778888888
Q ss_pred HhC-CCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEe
Q 042753 299 EKT-DVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVML 377 (473)
Q Consensus 299 ~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l 377 (473)
++. +.+++|+.+.+. . +.+.. .++|+.+.+|+|+.++|+++++ ||||||.||+.||+++|+|+|
T Consensus 246 ~~~p~~~~v~~~~~~~----~---~~l~~------~~~~v~~~~~~~~~~ll~~ad~--~v~~~G~~t~~Ea~~~G~P~v 310 (391)
T 3tsa_A 246 TELPGVEAVIAVPPEH----R---ALLTD------LPDNARIAESVPLNLFLRTCEL--VICAGGSGTAFTATRLGIPQL 310 (391)
T ss_dssp HTSTTEEEEEECCGGG----G---GGCTT------CCTTEEECCSCCGGGTGGGCSE--EEECCCHHHHHHHHHTTCCEE
T ss_pred ccCCCeEEEEEECCcc----h---hhccc------CCCCEEEeccCCHHHHHhhCCE--EEeCCCHHHHHHHHHhCCCEE
Confidence 877 788998887642 1 11211 2468999999999999999997 999999999999999999999
Q ss_pred cCcccccchhhHHHHHHHhcceEEeccCCC--CCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Q 042753 378 TWPMDADQYTNAQLLVDQLGVGIRVGEGTR--NIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLN 455 (473)
Q Consensus 378 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~--~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~ 455 (473)
++|...||+.|+.++++. |+|+.+. . .+.+.+.|.++|+++++|+ +++++++++++.+. ..++.++.++
T Consensus 311 ~~p~~~~q~~~a~~~~~~-g~g~~~~---~~~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~ 381 (391)
T 3tsa_A 311 VLPQYFDQFDYARNLAAA-GAGICLP---DEQAQSDHEQFTDSIATVLGDT-GFAAAAIKLSDEIT----AMPHPAALVR 381 (391)
T ss_dssp ECCCSTTHHHHHHHHHHT-TSEEECC---SHHHHTCHHHHHHHHHHHHTCT-HHHHHHHHHHHHHH----TSCCHHHHHH
T ss_pred ecCCcccHHHHHHHHHHc-CCEEecC---cccccCCHHHHHHHHHHHHcCH-HHHHHHHHHHHHHH----cCCCHHHHHH
Confidence 999999999999999955 9999998 6 6689999999999999997 99999999999884 4566777777
Q ss_pred HHHHHHH
Q 042753 456 DFIKRIN 462 (473)
Q Consensus 456 ~~~~~~~ 462 (473)
.+++.+.
T Consensus 382 ~i~~~~~ 388 (391)
T 3tsa_A 382 TLENTAA 388 (391)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 6665543
No 19
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=100.00 E-value=9.4e-32 Score=267.61 Aligned_cols=364 Identities=17% Similarity=0.182 Sum_probs=244.4
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC-------------CC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP-------------KW 70 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~-------------~~ 70 (473)
.+|||++++.++.||++|+++|+++|.++||+|++++++...+.+... ++.+..++.. ..
T Consensus 19 ~~MrIl~~~~~~~Gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 3otg_A 19 RHMRVLFASLGTHGHTYPLLPLATAARAAGHEVTFATGEGFAGTLRKL-------GFEPVATGMPVFDGFLAALRIRFDT 91 (412)
T ss_dssp CSCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEECGGGHHHHHHT-------TCEEEECCCCHHHHHHHHHHHHHSC
T ss_pred ceeEEEEEcCCCcccHHHHHHHHHHHHHCCCEEEEEccHHHHHHHHhc-------CCceeecCcccccchhhhhhhhhcc
Confidence 478999999999999999999999999999999999998665555544 7888877630 00
Q ss_pred CCC---CCh---hhHHHHHHHH-HHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchHHHHHHHH
Q 042753 71 PAG---SPA---TRLLKFMRVL-RELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGAFALSVSF 143 (473)
Q Consensus 71 ~~~---~~~---~~~~~~~~~~-~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~ 143 (473)
... ... ..+...+... .......+.+++++. +||+||+|....++..+|+.+|||+|.+............
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~pDvVv~~~~~~~~~~aa~~~giP~v~~~~~~~~~~~~~~ 169 (412)
T 3otg_A 92 DSPEGLTPEQLSELPQIVFGRVIPQRVFDELQPVIERL--RPDLVVQEISNYGAGLAALKAGIPTICHGVGRDTPDDLTR 169 (412)
T ss_dssp SCCTTCCHHHHTTSHHHHHHTHHHHHHHHHHHHHHHHH--CCSEEEEETTCHHHHHHHHHHTCCEEEECCSCCCCSHHHH
T ss_pred cCCccCChhHhhHHHHHHHhccchHHHHHHHHHHHHhc--CCCEEEECchhhHHHHHHHHcCCCEEEecccccCchhhhH
Confidence 000 000 1111111111 213446788889999 9999999977777888999999999886433210000000
Q ss_pred hhhccCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhh------ccCCcEEeecchHHhh
Q 042753 144 AMWTDLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMA------NKTSWGIVFNSFAELE 217 (473)
Q Consensus 144 ~~~~~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~le 217 (473)
.+... ..+...+.... ......++..+-..++
T Consensus 170 ---------------------------------~~~~~---------~~~~~~~~g~~~~~~~~~~~~d~~i~~~~~~~~ 207 (412)
T 3otg_A 170 ---------------------------------SIEEE---------VRGLAQRLGLDLPPGRIDGFGNPFIDIFPPSLQ 207 (412)
T ss_dssp ---------------------------------HHHHH---------HHHHHHHTTCCCCSSCCGGGGCCEEECSCGGGS
T ss_pred ---------------------------------HHHHH---------HHHHHHHcCCCCCcccccCCCCeEEeeCCHHhc
Confidence 00000 00000000000 0111222222222222
Q ss_pred HHHHHHHHHhhCCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHH-hcCCCCCcEEEEEeCCcccCCHHHHHHHHH
Q 042753 218 RVYIDHMKKEMGHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTW-LDSRRDESVVYVCFGSRYVLTAKQIHELAA 296 (473)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~ 296 (473)
.. ...+. .....+.+..... .....+| .....++++||+++||......+.+..+++
T Consensus 208 ~~-----~~~~~-~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~ 265 (412)
T 3otg_A 208 EP-----EFRAR-PRRHELRPVPFAE----------------QGDLPAWLSSRDTARPLVYLTLGTSSGGTVEVLRAAID 265 (412)
T ss_dssp CH-----HHHTC-TTEEECCCCCCCC----------------CCCCCGGGGGSCTTSCEEEEECTTTTCSCHHHHHHHHH
T ss_pred CC-----cccCC-CCcceeeccCCCC----------------CCCCCCccccccCCCCEEEEEcCCCCcCcHHHHHHHHH
Confidence 11 11111 1222222111111 1123345 232357889999999997667788999999
Q ss_pred HHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeE
Q 042753 297 ALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVM 376 (473)
Q Consensus 297 al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~ 376 (473)
++++.+.+++|+.+... +.+.+.. .++|+.+.+|+|+.++|+++++ ||+|||+||++||+++|+|+
T Consensus 266 ~l~~~~~~~~~~~g~~~------~~~~l~~------~~~~v~~~~~~~~~~~l~~ad~--~v~~~g~~t~~Ea~a~G~P~ 331 (412)
T 3otg_A 266 GLAGLDADVLVASGPSL------DVSGLGE------VPANVRLESWVPQAALLPHVDL--VVHHGGSGTTLGALGAGVPQ 331 (412)
T ss_dssp HHHTSSSEEEEECCSSC------CCTTCCC------CCTTEEEESCCCHHHHGGGCSE--EEESCCHHHHHHHHHHTCCE
T ss_pred HHHcCCCEEEEEECCCC------Chhhhcc------CCCcEEEeCCCCHHHHHhcCcE--EEECCchHHHHHHHHhCCCE
Confidence 99988999999988752 1122221 2368999999999999999997 99999999999999999999
Q ss_pred ecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Q 042753 377 LTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLND 456 (473)
Q Consensus 377 l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~ 456 (473)
|++|...||..|+.++++. |+|..+. ..++++++|.++|.++++|+ ++++++.+.++.+. ...+.++.++.
T Consensus 332 v~~p~~~~q~~~~~~v~~~-g~g~~~~---~~~~~~~~l~~ai~~ll~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~ 402 (412)
T 3otg_A 332 LSFPWAGDSFANAQAVAQA-GAGDHLL---PDNISPDSVSGAAKRLLAEE-SYRAGARAVAAEIA----AMPGPDEVVRL 402 (412)
T ss_dssp EECCCSTTHHHHHHHHHHH-TSEEECC---GGGCCHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH----HSCCHHHHHTT
T ss_pred EecCCchhHHHHHHHHHHc-CCEEecC---cccCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHh----cCCCHHHHHHH
Confidence 9999999999999999955 9999998 67789999999999999997 99999999988885 34567777777
Q ss_pred HHHHHHh
Q 042753 457 FIKRINE 463 (473)
Q Consensus 457 ~~~~~~~ 463 (473)
+.+.+.+
T Consensus 403 ~~~l~~~ 409 (412)
T 3otg_A 403 LPGFASR 409 (412)
T ss_dssp HHHHHC-
T ss_pred HHHHhcc
Confidence 7766543
No 20
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.96 E-value=2e-28 Score=238.88 Aligned_cols=312 Identities=17% Similarity=0.135 Sum_probs=194.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
+||++...++-||++|.++||++|.++||+|+|+++.... +.+.+. ++.+..++.....+......+...+
T Consensus 3 ~~i~i~~GGTgGHi~palala~~L~~~g~~V~~vg~~~g~e~~~v~~~-------g~~~~~i~~~~~~~~~~~~~~~~~~ 75 (365)
T 3s2u_A 3 GNVLIMAGGTGGHVFPALACAREFQARGYAVHWLGTPRGIENDLVPKA-------GLPLHLIQVSGLRGKGLKSLVKAPL 75 (365)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEEECSSSTHHHHTGGG-------TCCEEECC--------------CHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEECCchHhhchhhhc-------CCcEEEEECCCcCCCCHHHHHHHHH
Confidence 5788888777799999999999999999999999987542 223443 6778777642211111111111111
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCcc
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDAL 161 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 161 (473)
..+. ......+++++. +||+||++.... .+..+|+.+|||++..- +
T Consensus 76 ~~~~--~~~~~~~~l~~~--~PDvVi~~g~~~s~p~~laA~~~~iP~vihe-~--------------------------- 123 (365)
T 3s2u_A 76 ELLK--SLFQALRVIRQL--RPVCVLGLGGYVTGPGGLAARLNGVPLVIHE-Q--------------------------- 123 (365)
T ss_dssp HHHH--HHHHHHHHHHHH--CCSEEEECSSSTHHHHHHHHHHTTCCEEEEE-C---------------------------
T ss_pred HHHH--HHHHHHHHHHhc--CCCEEEEcCCcchHHHHHHHHHcCCCEEEEe-c---------------------------
Confidence 1111 123456788899 999999997655 34577899999998631 1
Q ss_pred ccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEeccCCC
Q 042753 162 VSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAVGPVLP 241 (473)
Q Consensus 162 ~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~vGpl~~ 241 (473)
..+|++.+ +++.+. ... ...++++..+ .. ++..++|+.+.
T Consensus 124 n~~~G~~n-----------------------r~l~~~------a~~-v~~~~~~~~~---------~~-~k~~~~g~pvr 163 (365)
T 3s2u_A 124 NAVAGTAN-----------------------RSLAPI------ARR-VCEAFPDTFP---------AS-DKRLTTGNPVR 163 (365)
T ss_dssp SSSCCHHH-----------------------HHHGGG------CSE-EEESSTTSSC---------C----CEECCCCCC
T ss_pred chhhhhHH-----------------------Hhhccc------cce-eeeccccccc---------Cc-CcEEEECCCCc
Confidence 11122110 010000 111 1122221110 11 35677785544
Q ss_pred CCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC----CCcEEEEEeCCCccCC
Q 042753 242 PDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT----DVDFVYCVREPDERHA 317 (473)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~i~~~~~~~~~~~ 317 (473)
.. . ..... .+....+++++|+|..||..... ..+.+.+++++. +..++|.++...
T Consensus 164 ~~-~-----------~~~~~---~~~~~~~~~~~ilv~gGs~g~~~--~~~~~~~al~~l~~~~~~~vi~~~G~~~---- 222 (365)
T 3s2u_A 164 GE-L-----------FLDAH---ARAPLTGRRVNLLVLGGSLGAEP--LNKLLPEALAQVPLEIRPAIRHQAGRQH---- 222 (365)
T ss_dssp GG-G-----------CCCTT---SSCCCTTSCCEEEECCTTTTCSH--HHHHHHHHHHTSCTTTCCEEEEECCTTT----
T ss_pred hh-h-----------ccchh---hhcccCCCCcEEEEECCcCCccc--cchhhHHHHHhcccccceEEEEecCccc----
Confidence 43 1 00000 01111246789999999986432 223355566543 456777777642
Q ss_pred cccCCCCchhhHHhh--cCCCeEeecCccHH-HhhhccCccceeeccCchhHHHHHhhCCeEecCccc----ccchhhHH
Q 042753 318 SQDCGVLPDGFEDRV--AGRGYVIRGWSQQV-AILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD----ADQYTNAQ 390 (473)
Q Consensus 318 ~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~-~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~ 390 (473)
.+...++. .+.++.+..|+++. ++|+.+|+ +|||+|.+|+.|++++|+|+|++|+. .+|..||+
T Consensus 223 -------~~~~~~~~~~~~~~~~v~~f~~dm~~~l~~aDl--vI~raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~ 293 (365)
T 3s2u_A 223 -------AEITAERYRTVAVEADVAPFISDMAAAYAWADL--VICRAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAE 293 (365)
T ss_dssp -------HHHHHHHHHHTTCCCEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECC-----CCHHHHHHH
T ss_pred -------cccccceecccccccccccchhhhhhhhccceE--EEecCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHH
Confidence 12222221 24577788999875 69999997 99999999999999999999999874 58999999
Q ss_pred HHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHH
Q 042753 391 LLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERL 431 (473)
Q Consensus 391 rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~ 431 (473)
.+++. |+|+.+. .++++++.|.++|.++++|+ +.++
T Consensus 294 ~l~~~-G~a~~l~---~~~~~~~~L~~~i~~ll~d~-~~~~ 329 (365)
T 3s2u_A 294 FLVRS-GAGRLLP---QKSTGAAELAAQLSEVLMHP-ETLR 329 (365)
T ss_dssp HHHTT-TSEEECC---TTTCCHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHC-CCEEEee---cCCCCHHHHHHHHHHHHCCH-HHHH
Confidence 99966 9999999 88899999999999999997 5443
No 21
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.4e-27 Score=202.03 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=139.7
Q ss_pred CCChhhhHHHhcCCCCCcEEEEEeCCcc-cCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCC
Q 042753 257 SVPAHDVLTWLDSRRDESVVYVCFGSRY-VLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGR 335 (473)
Q Consensus 257 ~~~~~~~~~~l~~~~~~~~V~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~ 335 (473)
+++++++.+|++..+++++|||++||.. ....+.+..+++++++.+.+++|+++... .+.+ ++
T Consensus 5 ~~l~~~~~~~l~~~~~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~-------~~~~---------~~ 68 (170)
T 2o6l_A 5 KPLPKEMEDFVQSSGENGVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNK-------PDTL---------GL 68 (170)
T ss_dssp CCCCHHHHHHHHTTTTTCEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSC-------CTTC---------CT
T ss_pred CCCCHHHHHHHHcCCCCCEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcC-------cccC---------CC
Confidence 4577899999987567799999999996 45778889999999988999999997642 0122 36
Q ss_pred CeEeecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHH
Q 042753 336 GYVIRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDEL 415 (473)
Q Consensus 336 nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l 415 (473)
|+.+.+|+||.++|.|+..++||||||+||+.||+++|+|+|++|...||..||.++++ .|+|+.++ ..+++.++|
T Consensus 69 ~v~~~~~~~~~~~l~~~~ad~~I~~~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l~~-~g~g~~~~---~~~~~~~~l 144 (170)
T 2o6l_A 69 NTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPMVGIPLFADQPDNIAHMKA-RGAAVRVD---FNTMSSTDL 144 (170)
T ss_dssp TEEEESSCCHHHHHTSTTEEEEEECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHHT-TTSEEECC---TTTCCHHHH
T ss_pred cEEEecCCCHHHHhcCCCcCEEEEcCCccHHHHHHHcCCCEEeccchhhHHHHHHHHHH-cCCeEEec---cccCCHHHH
Confidence 88999999999999555555699999999999999999999999999999999999995 49999998 778999999
Q ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Q 042753 416 ARLLAQSVDGPRRERLKARELSGAAL 441 (473)
Q Consensus 416 ~~~i~~~l~~~~~~~~~a~~~~~~~~ 441 (473)
.++|.++++|+ +|+++|+++++.++
T Consensus 145 ~~~i~~ll~~~-~~~~~a~~~~~~~~ 169 (170)
T 2o6l_A 145 LNALKRVINDP-SYKENVMKLSRIQH 169 (170)
T ss_dssp HHHHHHHHHCH-HHHHHHHHHC----
T ss_pred HHHHHHHHcCH-HHHHHHHHHHHHhh
Confidence 99999999997 99999999998875
No 22
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.87 E-value=1.2e-20 Score=184.20 Aligned_cols=343 Identities=18% Similarity=0.134 Sum_probs=209.4
Q ss_pred CCCCc-cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh--hhhhhhccCCCCCCeeEEEcCCCCCCCCCChh
Q 042753 1 MLPAG-AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 1 ~~~~~-~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
||..| +||++++.+..||..++..|+++|.++||+|++++..... ..+... ++.+..++...........
T Consensus 1 mM~~m~mkIl~~~~~~gG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~~~ 73 (364)
T 1f0k_A 1 MMSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADRMEADLVPKH-------GIEIDFIRISGLRGKGIKA 73 (364)
T ss_dssp ------CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECTTSTHHHHGGGG-------TCEEEECCCCCCTTCCHHH
T ss_pred CCCCCCcEEEEEeCCCccchhHHHHHHHHHHHcCCEEEEEecCCcchhhhcccc-------CCceEEecCCccCcCccHH
Confidence 66666 8999998777799999999999999999999999987542 222222 6777766643211100001
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCC
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDP 155 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~ 155 (473)
.+...... . .....+.+++++. +||+|+++.... .+..+++..|+|+|.......
T Consensus 74 ~~~~~~~~-~-~~~~~l~~~l~~~--~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------- 130 (364)
T 1f0k_A 74 LIAAPLRI-F-NAWRQARAIMKAY--KPDVVLGMGGYVSGPGGLAAWSLGIPVVLHEQNGI------------------- 130 (364)
T ss_dssp HHTCHHHH-H-HHHHHHHHHHHHH--CCSEEEECSSTTHHHHHHHHHHTTCCEEEEECSSS-------------------
T ss_pred HHHHHHHH-H-HHHHHHHHHHHhc--CCCEEEEeCCcCchHHHHHHHHcCCCEEEEecCCC-------------------
Confidence 11001111 1 2234567788888 999999986542 456778889999886422100
Q ss_pred CCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEE
Q 042753 156 DNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWA 235 (473)
Q Consensus 156 ~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~ 235 (473)
++ . ..+. .....+.++..+ .+. + +++..
T Consensus 131 ---------~~--------------~---------~~~~------~~~~~d~v~~~~-~~~-----------~--~~~~~ 158 (364)
T 1f0k_A 131 ---------AG--------------L---------TNKW------LAKIATKVMQAF-PGA-----------F--PNAEV 158 (364)
T ss_dssp ---------CC--------------H---------HHHH------HTTTCSEEEESS-TTS-----------S--SSCEE
T ss_pred ---------Cc--------------H---------HHHH------HHHhCCEEEecC-hhh-----------c--CCceE
Confidence 00 0 0000 001122223222 111 1 24455
Q ss_pred eccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhC--CCcEEEEEeCCC
Q 042753 236 VGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKT--DVDFVYCVREPD 313 (473)
Q Consensus 236 vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~i~~~~~~~ 313 (473)
+|.-+... . . . .+. ..+.+....++++|++..|+... ......++++++.. +.++++.++...
T Consensus 159 i~n~v~~~-~-----~-----~-~~~-~~~~~~~~~~~~~il~~~g~~~~--~k~~~~li~a~~~l~~~~~~l~i~G~~~ 223 (364)
T 1f0k_A 159 VGNPVRTD-V-----L-----A-LPL-PQQRLAGREGPVRVLVVGGSQGA--RILNQTMPQVAAKLGDSVTIWHQSGKGS 223 (364)
T ss_dssp CCCCCCHH-H-----H-----T-SCC-HHHHHTTCCSSEEEEEECTTTCC--HHHHHHHHHHHHHHGGGEEEEEECCTTC
T ss_pred eCCccchh-h-----c-----c-cch-hhhhcccCCCCcEEEEEcCchHh--HHHHHHHHHHHHHhcCCcEEEEEcCCch
Confidence 55432221 1 0 0 001 11222222356778888888753 33444455666543 456667676641
Q ss_pred ccCCcccCCCCchhhHHhh---cCCCeEeecCcc-HHHhhhccCccceeeccCchhHHHHHhhCCeEecCccc---ccch
Q 042753 314 ERHASQDCGVLPDGFEDRV---AGRGYVIRGWSQ-QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD---ADQY 386 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~---~~~nv~v~~~~p-q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~---~DQ~ 386 (473)
.+.+.+.. ..+++.+.+|++ -.++++.+++ +|+++|.+++.||+++|+|+|+.|.. .||.
T Consensus 224 -----------~~~l~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~--~v~~sg~~~~~EAma~G~Pvi~~~~~g~~~~q~ 290 (364)
T 1f0k_A 224 -----------QQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADV--VVCRSGALTVSEIAAAGLPALFVPFQHKDRQQY 290 (364)
T ss_dssp -----------HHHHHHHHHHTTCTTSEEESCCSCHHHHHHHCSE--EEECCCHHHHHHHHHHTCCEEECCCCCTTCHHH
T ss_pred -----------HHHHHHHHhhcCCCceEEecchhhHHHHHHhCCE--EEECCchHHHHHHHHhCCCEEEeeCCCCchhHH
Confidence 12333222 225788889994 4679999997 99999999999999999999999988 7999
Q ss_pred hhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 387 TNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.|+..+.+. |.|..++ ..+++.++|.++|.++ |+ ..+++..+-+... ....+.++.++.+++.+++.
T Consensus 291 ~~~~~~~~~-g~g~~~~---~~d~~~~~la~~i~~l--~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~y~~~ 357 (364)
T 1f0k_A 291 WNALPLEKA-GAAKIIE---QPQLSVDAVANTLAGW--SR-ETLLTMAERARAA----SIPDATERVANEVSRVARAL 357 (364)
T ss_dssp HHHHHHHHT-TSEEECC---GGGCCHHHHHHHHHTC--CH-HHHHHHHHHHHHT----CCTTHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhC-CcEEEec---cccCCHHHHHHHHHhc--CH-HHHHHHHHHHHHh----hccCHHHHHHHHHHHHHHHH
Confidence 999999955 9999888 6667799999999998 65 6655554444333 23566777777777776664
No 23
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=99.61 E-value=1.4e-15 Score=135.07 Aligned_cols=132 Identities=14% Similarity=0.163 Sum_probs=96.4
Q ss_pred CCCcEEEEEeCCcccCCHHHHHH-----HHHHHHhCC-CcEEEEEeCCCccCCcccCCCCchhhHHhh------------
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHE-----LAAALEKTD-VDFVYCVREPDERHASQDCGVLPDGFEDRV------------ 332 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~-----~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~------------ 332 (473)
.++++|||+.||... -.+.+.. ++++|.+.+ .+++++++... ....+.+.++.
T Consensus 26 ~~~~~VlVtgGS~~~-~n~li~~vl~~~~l~~L~~~~~~~vv~q~G~~~--------~~~~~~~~~~~~~~~~~~l~p~~ 96 (224)
T 2jzc_A 26 IEEKALFVTCGATVP-FPKLVSCVLSDEFCQELIQYGFVRLIIQFGRNY--------SSEFEHLVQERGGQRESQKIPID 96 (224)
T ss_dssp CCSCCEEEECCSCCS-CHHHHHHHTSHHHHHHHHTTTCCCEEECCCSSS--------CCCCCSHHHHHTCEECSCCCSSC
T ss_pred CCCCEEEEEcCCchH-HHHHHHHHHHHHHHHHHhcCCCeEEEEEECCCc--------hhhHHHHHHhhhccccccccccc
Confidence 468999999999842 2343433 348888877 79999999863 10111111111
Q ss_pred ---------------cCCCeEeecCccHH-Hhhh-ccCccceeeccCchhHHHHHhhCCeEecCccc----ccchhhHHH
Q 042753 333 ---------------AGRGYVIRGWSQQV-AILR-HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD----ADQYTNAQL 391 (473)
Q Consensus 333 ---------------~~~nv~v~~~~pq~-~lL~-~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~r 391 (473)
..-++.+.+|+++. ++|+ .+++ +|||||+||+.|++++|+|+|++|.. .||..||++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~v~v~~f~~~m~~~l~~~Adl--vIshaGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~ 174 (224)
T 2jzc_A 97 QFGCGDTARQYVLMNGKLKVIGFDFSTKMQSIIRDYSDL--VISHAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADK 174 (224)
T ss_dssp TTCTTCSCEEEESTTTSSEEEECCSSSSHHHHHHHHCSC--EEESSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHH
T ss_pred cccccccccccccccCCceEEEeeccchHHHHHHhcCCE--EEECCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHH
Confidence 01245677888876 7899 9998 99999999999999999999999984 479999999
Q ss_pred HHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 392 LVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 392 v~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
+++. |+|+.++ .+.|.++|+++
T Consensus 175 l~~~-G~~~~~~--------~~~L~~~i~~l 196 (224)
T 2jzc_A 175 FVEL-GYVWSCA--------PTETGLIAGLR 196 (224)
T ss_dssp HHHH-SCCCEEC--------SCTTTHHHHHH
T ss_pred HHHC-CCEEEcC--------HHHHHHHHHHH
Confidence 9955 9987664 45566677766
No 24
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=99.61 E-value=1.9e-14 Score=133.23 Aligned_cols=116 Identities=10% Similarity=0.114 Sum_probs=90.0
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccHH-Hhh
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQV-AIL 349 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq~-~lL 349 (473)
..+.|+|++|+... ......++++|.+.. ++.++++.+. ...+.+.+... .+|+.+..|+++. ++|
T Consensus 156 ~~~~ILv~~GG~d~--~~l~~~vl~~L~~~~-~i~vv~G~~~---------~~~~~l~~~~~~~~~v~v~~~~~~m~~~m 223 (282)
T 3hbm_A 156 KKYDFFICMGGTDI--KNLSLQIASELPKTK-IISIATSSSN---------PNLKKLQKFAKLHNNIRLFIDHENIAKLM 223 (282)
T ss_dssp CCEEEEEECCSCCT--TCHHHHHHHHSCTTS-CEEEEECTTC---------TTHHHHHHHHHTCSSEEEEESCSCHHHHH
T ss_pred cCCeEEEEECCCch--hhHHHHHHHHhhcCC-CEEEEECCCc---------hHHHHHHHHHhhCCCEEEEeCHHHHHHHH
Confidence 45689999998643 335566788886654 5777776652 22233433222 3589999999876 589
Q ss_pred hccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 350 RHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 350 ~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
..+++ +|++|| +|+.|+++.|+|+|++|...+|..||+.+++. |+++.+.
T Consensus 224 ~~aDl--vI~~gG-~T~~E~~~~g~P~i~ip~~~~Q~~nA~~l~~~-G~~~~~~ 273 (282)
T 3hbm_A 224 NESNK--LIISAS-SLVNEALLLKANFKAICYVKNQESTATWLAKK-GYEVEYK 273 (282)
T ss_dssp HTEEE--EEEESS-HHHHHHHHTTCCEEEECCSGGGHHHHHHHHHT-TCEEECG
T ss_pred HHCCE--EEECCc-HHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHC-CCEEEcc
Confidence 99997 999999 89999999999999999999999999999955 9999887
No 25
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.45 E-value=5.6e-13 Score=130.24 Aligned_cols=159 Identities=19% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEK-----TDVDFVYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq 345 (473)
++++|+++.|...... .+..+++++++ .+.++++..+.+ ..+-+.+.+... .+++.+.+++++
T Consensus 197 ~~~~vl~~~gr~~~~k--~~~~ll~a~~~l~~~~~~~~lv~~~g~~---------~~~~~~l~~~~~~~~~v~~~g~~g~ 265 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWP--LLSDLAQALKRVAEAFPHLTFVYPVHLN---------PVVREAVFPVLKGVRNFVLLDPLEY 265 (376)
T ss_dssp SSCEEEECCCCGGGGG--GHHHHHHHHHHHHHHCTTSEEEEECCSC---------HHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred CCCEEEEEeCcccchH--HHHHHHHHHHHHHhhCCCeEEEEECCCC---------HHHHHHHHHHhccCCCEEEECCCCH
Confidence 4567888888654322 23445555543 245555544532 101123333222 357888866554
Q ss_pred ---HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 346 ---VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 346 ---~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
.++++.+++ ||+.+| |.+.||+++|+|+|+.+...++... .+. |.|+.+. .+.++|.++|.++
T Consensus 266 ~~~~~~~~~ad~--~v~~S~-g~~lEA~a~G~PvI~~~~~~~~~~~----~~~-g~g~lv~------~d~~~la~~i~~l 331 (376)
T 1v4v_A 266 GSMAALMRASLL--LVTDSG-GLQEEGAALGVPVVVLRNVTERPEG----LKA-GILKLAG------TDPEGVYRVVKGL 331 (376)
T ss_dssp HHHHHHHHTEEE--EEESCH-HHHHHHHHTTCCEEECSSSCSCHHH----HHH-TSEEECC------SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcE--EEECCc-CHHHHHHHcCCCEEeccCCCcchhh----hcC-CceEECC------CCHHHHHHHHHHH
Confidence 578999997 898884 4466999999999998766666663 335 8887764 3899999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 042753 423 VDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKR 460 (473)
Q Consensus 423 l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~ 460 (473)
++|+ ..+++..+.+..+ ..++++++.++.+.+.
T Consensus 332 l~d~-~~~~~~~~~~~~~----~~~~~~~~i~~~i~~~ 364 (376)
T 1v4v_A 332 LENP-EELSRMRKAKNPY----GDGKAGLMVARGVAWR 364 (376)
T ss_dssp HTCH-HHHHHHHHSCCSS----CCSCHHHHHHHHHHHH
T ss_pred HhCh-HhhhhhcccCCCC----CCChHHHHHHHHHHHH
Confidence 9986 5554443321111 2344455555444443
No 26
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.42 E-value=3e-10 Score=111.23 Aligned_cols=352 Identities=13% Similarity=0.065 Sum_probs=194.6
Q ss_pred CccEEEEEcC--C--CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 4 AGAHILVYPF--P--TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 4 ~~~~Il~~~~--~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
.|+||++++. + ..|.-..+..+++.| +||+|++++............. ..++.+..++... .++..
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L--~g~~v~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~--- 72 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQ--DPESIVVFASTQNAEEAHAYDK---TLDYEVIRWPRSV--MLPTP--- 72 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTS--CGGGEEEEEECSSHHHHHHHHT---TCSSEEEEESSSS--CCSCH---
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHh--cCCeEEEEECCCCccchhhhcc---ccceEEEEccccc--cccch---
Confidence 4678987763 3 357788889999999 6999999998866432111110 1357777666321 11100
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCC
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDN 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (473)
.....+.+++++. +||+|++..... ....+++.+++|.+.++....... .
T Consensus 73 ---------~~~~~l~~~~~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~-~---------------- 124 (394)
T 3okp_A 73 ---------TTAHAMAEIIRER--EIDNVWFGAAAPLALMAGTAKQAGASKVIASTHGHEVG-W---------------- 124 (394)
T ss_dssp ---------HHHHHHHHHHHHT--TCSEEEESSCTTGGGGHHHHHHTTCSEEEEECCSTHHH-H----------------
T ss_pred ---------hhHHHHHHHHHhc--CCCEEEECCcchHHHHHHHHHhcCCCcEEEEeccchhh-h----------------
Confidence 2234567788888 999999865544 455678889999555433321100 0
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhC-CCcEEEe
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMG-HDRVWAV 236 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~-~~~~~~v 236 (473)
. . ........ .......+.++..|-...+ .+....+ ..++..+
T Consensus 125 ---------------~-~------------~~~~~~~~---~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~~~vi 168 (394)
T 3okp_A 125 ---------------S-M------------LPGSRQSL---RKIGTEVDVLTYISQYTLR-----RFKSAFGSHPTFEHL 168 (394)
T ss_dssp ---------------T-T------------SHHHHHHH---HHHHHHCSEEEESCHHHHH-----HHHHHHCSSSEEEEC
T ss_pred ---------------h-h------------cchhhHHH---HHHHHhCCEEEEcCHHHHH-----HHHHhcCCCCCeEEe
Confidence 0 0 00001111 1123445566665532222 2222221 0356666
Q ss_pred ccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh--CCCcEEEEEeCCC
Q 042753 237 GPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK--TDVDFVYCVREPD 313 (473)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~--~~~~~i~~~~~~~ 313 (473)
..-+... . ... ........+.+.+.- .++..+++..|+... ...+.+-+.+..+.+ .+.++++ ++...
T Consensus 169 ~ngv~~~-~----~~~--~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l~i-~G~g~ 239 (394)
T 3okp_A 169 PSGVDVK-R----FTP--ATPEDKSATRKKLGF-TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQLLI-VGSGR 239 (394)
T ss_dssp CCCBCTT-T----SCC--CCHHHHHHHHHHTTC-CTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEEEE-ECCCT
T ss_pred cCCcCHH-H----cCC--CCchhhHHHHHhcCC-CcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEE-EcCch
Confidence 6433332 1 000 000011233333433 344467778888743 234444444444433 2445444 34321
Q ss_pred ccCCcccCCCCchhhHHhh--cCCCeEeecCccHHH---hhhccCccceee-----------ccCchhHHHHHhhCCeEe
Q 042753 314 ERHASQDCGVLPDGFEDRV--AGRGYVIRGWSQQVA---ILRHKAVGAFLT-----------HCGWNSVLEGVSAGVVML 377 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~~--~~~nv~v~~~~pq~~---lL~~~~v~~~It-----------HgG~~s~~eal~~GvP~l 377 (473)
..+.+.+.. ..+++.+.+|+|+.+ ++..+++ +|. -|..+++.||+++|+|+|
T Consensus 240 ----------~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~--~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~PvI 307 (394)
T 3okp_A 240 ----------YESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADI--FAMPARTRGGGLDVEGLGIVYLEAQACGVPVI 307 (394)
T ss_dssp ----------THHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSE--EEECCCCBGGGTBCCSSCHHHHHHHHTTCCEE
T ss_pred ----------HHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCE--EEecCccccccccccccCcHHHHHHHcCCCEE
Confidence 112333222 136888999997655 6788887 665 566779999999999999
Q ss_pred cCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHH-HHHHHHHHHHHhcCCChHHHHHH
Q 042753 378 TWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKA-RELSGAALSAVVKGGSSDRDLND 456 (473)
Q Consensus 378 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a-~~~~~~~~~~~~~~gs~~~~~~~ 456 (473)
+.+..+ ....+. . |.|..++ .-+.+++.++|.++++|+ ..+++. +.-++.+ ...-+.+..+++
T Consensus 308 ~~~~~~----~~e~i~-~-~~g~~~~-----~~d~~~l~~~i~~l~~~~-~~~~~~~~~~~~~~----~~~~s~~~~~~~ 371 (394)
T 3okp_A 308 AGTSGG----APETVT-P-ATGLVVE-----GSDVDKLSELLIELLDDP-IRRAAMGAAGRAHV----EAEWSWEIMGER 371 (394)
T ss_dssp ECSSTT----GGGGCC-T-TTEEECC-----TTCHHHHHHHHHHHHTCH-HHHHHHHHHHHHHH----HHHTBHHHHHHH
T ss_pred EeCCCC----hHHHHh-c-CCceEeC-----CCCHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH----HHhCCHHHHHHH
Confidence 976532 223333 4 5777776 347999999999999987 433222 2222222 223467888888
Q ss_pred HHHHHHhhcc
Q 042753 457 FIKRINELKS 466 (473)
Q Consensus 457 ~~~~~~~~~~ 466 (473)
+++.+++...
T Consensus 372 ~~~~~~~~~r 381 (394)
T 3okp_A 372 LTNILQSEPR 381 (394)
T ss_dssp HHHHHHSCCC
T ss_pred HHHHHHHhcc
Confidence 8888888743
No 27
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.40 E-value=3e-10 Score=113.07 Aligned_cols=372 Identities=13% Similarity=0.081 Sum_probs=188.1
Q ss_pred CccEEEEEcC---C--------CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh--hhhhccCCCCCCeeEEEcCCCCC
Q 042753 4 AGAHILVYPF---P--------TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL--LDSLNANHPSTSLQSLVLPQPKW 70 (473)
Q Consensus 4 ~~~~Il~~~~---~--------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~--i~~~~~~~~~~~~~f~~l~~~~~ 70 (473)
.|+||++++. | ..|+-.....|++.|.++||+|++++....... .... ..++.+..++....
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~-----~~~v~v~~~~~~~~ 93 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRATRPSQGEIVRV-----AENLRVINIAAGPY 93 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEECCCGGGCSEEEE-----ETTEEEEEECCSCS
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecCCCCCCcccccc-----cCCeEEEEecCCCc
Confidence 4899998884 2 357888899999999999999999997653221 1111 13677776664322
Q ss_pred CCCCChhhHHHHHHHHHHHhhHHHHHH-HhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhc
Q 042753 71 PAGSPATRLLKFMRVLRELHYPALLDW-FKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWT 147 (473)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 147 (473)
......... .. +. .+...+.+. ++... +||+|++..... .+..+++.+++|+|..........
T Consensus 94 ~~~~~~~~~-~~---~~-~~~~~~~~~~~~~~~-~~Div~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-------- 159 (438)
T 3c48_A 94 EGLSKEELP-TQ---LA-AFTGGMLSFTRREKV-TYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVK-------- 159 (438)
T ss_dssp SSCCGGGGG-GG---HH-HHHHHHHHHHHHHTC-CCSEEEEEHHHHHHHHHHHHHHHTCCEEEECSSCHHHH--------
T ss_pred cccchhHHH-HH---HH-HHHHHHHHHHHhccC-CCCEEEeCCccHHHHHHHHHHHcCCCEEEEecCCcccc--------
Confidence 122211111 11 11 111222222 44441 499999875322 334567788999987654432110
Q ss_pred cCCCCCCCCCCCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHh
Q 042753 148 DLPTNDDPDNVDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKE 227 (473)
Q Consensus 148 ~~p~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~ 227 (473)
...+.. ....... ....+ ........+.++..|-...+ .+...
T Consensus 160 ----------------~~~~~~------~~~~~~~--------~~~~~--~~~~~~~~d~ii~~s~~~~~-----~~~~~ 202 (438)
T 3c48_A 160 ----------------NSYRDD------SDTPESE--------ARRIC--EQQLVDNADVLAVNTQEEMQ-----DLMHH 202 (438)
T ss_dssp ----------------SCC----------CCHHHH--------HHHHH--HHHHHHHCSEEEESSHHHHH-----HHHHH
T ss_pred ----------------cccccc------cCCcchH--------HHHHH--HHHHHhcCCEEEEcCHHHHH-----HHHHH
Confidence 000000 0000000 00001 11233445666666633222 12221
Q ss_pred h--CCCcEEEeccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHh-C-C
Q 042753 228 M--GHDRVWAVGPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEK-T-D 302 (473)
Q Consensus 228 ~--~~~~~~~vGpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~-~-~ 302 (473)
+ +..++..+..-+... . .... .....+.+.+.+.- .....+++..|+... ...+.+-..+..+.+ . +
T Consensus 203 ~g~~~~k~~vi~ngvd~~-~----~~~~--~~~~~~~~r~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~ 274 (438)
T 3c48_A 203 YDADPDRISVVSPGADVE-L----YSPG--NDRATERSRRELGI-PLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPD 274 (438)
T ss_dssp HCCCGGGEEECCCCCCTT-T----SCCC------CHHHHHHTTC-CSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTT
T ss_pred hCCChhheEEecCCcccc-c----cCCc--ccchhhhhHHhcCC-CCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCC
Confidence 2 103566666444332 1 0000 00011113333432 234567777888753 233444444444432 2 1
Q ss_pred CcE-EEEEeCCCccCCcccCCCCchhhHHhh----cCCCeEeecCccHH---HhhhccCccceeec----cCchhHHHHH
Q 042753 303 VDF-VYCVREPDERHASQDCGVLPDGFEDRV----AGRGYVIRGWSQQV---AILRHKAVGAFLTH----CGWNSVLEGV 370 (473)
Q Consensus 303 ~~~-i~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~nv~v~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~eal 370 (473)
..+ ++.++... . .+...+.+.+.. ..+++.+.+|+|+. +++..+++ +|.- |..+++.||+
T Consensus 275 ~~~~l~i~G~~~----~--~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eam 346 (438)
T 3c48_A 275 RNLRVIICGGPS----G--PNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADI--VAVPSFNESFGLVAMEAQ 346 (438)
T ss_dssp CSEEEEEECCBC------------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHH
T ss_pred cceEEEEEeCCC----C--CCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCE--EEECccccCCchHHHHHH
Confidence 222 33344310 0 001112232222 24679999999864 57888997 6543 3356899999
Q ss_pred hhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcC
Q 042753 371 SAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP---RRERLKARELSGAALSAVVKG 447 (473)
Q Consensus 371 ~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~ 447 (473)
++|+|+|+.+. ......+.+. +.|..++ .-+.+++.++|.++++|+ ..+.+++++....
T Consensus 347 a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~-----~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~-------- 408 (438)
T 3c48_A 347 ASGTPVIAARV----GGLPIAVAEG-ETGLLVD-----GHSPHAWADALATLLDDDETRIRMGEDAVEHART-------- 408 (438)
T ss_dssp HTTCCEEEESC----TTHHHHSCBT-TTEEEES-----SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH--------
T ss_pred HcCCCEEecCC----CChhHHhhCC-CcEEECC-----CCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHh--------
Confidence 99999999753 3444555423 5788776 347899999999999987 2333444443333
Q ss_pred CChHHHHHHHHHHHHhhc
Q 042753 448 GSSDRDLNDFIKRINELK 465 (473)
Q Consensus 448 gs~~~~~~~~~~~~~~~~ 465 (473)
-+.+..++++++.+++..
T Consensus 409 ~s~~~~~~~~~~~~~~~~ 426 (438)
T 3c48_A 409 FSWAATAAQLSSLYNDAI 426 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 234555566666655553
No 28
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.38 E-value=1.6e-12 Score=127.77 Aligned_cols=334 Identities=14% Similarity=0.070 Sum_probs=170.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeE-EEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQS-LVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f-~~l~~~~~~~~~~~~~~~~~ 82 (473)
|+||++++ ++.....=+.+|.++|.++ |+++.++.+....+....... ..++.. ..+.. ........
T Consensus 25 m~ki~~v~-Gtr~~~~~~a~li~~l~~~~~~~~~~~~tG~h~~~~~~~~~---~~~i~~~~~l~~-----~~~~~~~~-- 93 (396)
T 3dzc_A 25 MKKVLIVF-GTRPEAIKMAPLVQQLCQDNRFVAKVCVTGQHREMLDQVLE---LFSITPDFDLNI-----MEPGQTLN-- 93 (396)
T ss_dssp CEEEEEEE-CSHHHHHHHHHHHHHHHHCTTEEEEEEECCSSSHHHHHHHH---HTTCCCSEECCC-----CCTTCCHH--
T ss_pred CCeEEEEE-eccHhHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHH---hcCCCCceeeec-----CCCCCCHH--
Confidence 68887776 4555666678899999997 899876666544322221110 012210 11221 00111111
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEe--CCCc-chHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCC
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILS--DFFL-GWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD 159 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~--D~~~-~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (473)
..+. .....+.+++++. +||+|++ |... ..+..+|+++|||++.+....-
T Consensus 94 -~~~~-~~~~~l~~~l~~~--kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r----------------------- 146 (396)
T 3dzc_A 94 -GVTS-KILLGMQQVLSSE--QPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR----------------------- 146 (396)
T ss_dssp -HHHH-HHHHHHHHHHHHH--CCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-----------------------
T ss_pred -HHHH-HHHHHHHHHHHhc--CCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-----------------------
Confidence 1222 3456788889999 9999997 3233 2346788999999876421100
Q ss_pred ccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHH-hhCCCcEEEec-
Q 042753 160 ALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKK-EMGHDRVWAVG- 237 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~-~~~~~~~~~vG- 237 (473)
. ..++ ........+..... ..+.++..+-. .. +.+.. -.+..++.++|
T Consensus 147 ------s------~~~~-----------~~~~~~~~r~~~~~--~a~~~~~~se~-~~----~~l~~~G~~~~ki~vvGn 196 (396)
T 3dzc_A 147 ------T------GNIY-----------SPWPEEGNRKLTAA--LTQYHFAPTDT-SR----ANLLQENYNAENIFVTGN 196 (396)
T ss_dssp ------C------SCTT-----------SSTTHHHHHHHHHH--TCSEEEESSHH-HH----HHHHHTTCCGGGEEECCC
T ss_pred ------c------cccc-----------cCCcHHHHHHHHHH--hcCEEECCCHH-HH----HHHHHcCCCcCcEEEECC
Confidence 0 0000 00001111111111 12333333321 11 11111 11103688888
Q ss_pred cCCCCCCcchhhccCCCCCCCChhhhHHHhc-CCCCCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeC
Q 042753 238 PVLPPDDDLVESMCRGGSSSVPAHDVLTWLD-SRRDESVVYVCFGSRYVLTAKQIHELAAALEK-----TDVDFVYCVRE 311 (473)
Q Consensus 238 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~ 311 (473)
|..... . .............+.+.+.++ -..++++|+++.+-..+.... +..+++++++ .+.++++.++.
T Consensus 197 ~~~d~~-~--~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~-~~~ll~A~~~l~~~~~~~~~v~~~g~ 272 (396)
T 3dzc_A 197 TVIDAL-L--AVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGG-FERICQALITTAEQHPECQILYPVHL 272 (396)
T ss_dssp HHHHHH-H--HHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTH-HHHHHHHHHHHHHHCTTEEEEEECCB
T ss_pred cHHHHH-H--HhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhH-HHHHHHHHHHHHHhCCCceEEEEeCC
Confidence 443322 1 000000000000022233332 113567777775332222222 4556666553 34566665543
Q ss_pred CCccCCcccCCCCchhhHHhh-cCCCeEeecCcc---HHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchh
Q 042753 312 PDERHASQDCGVLPDGFEDRV-AGRGYVIRGWSQ---QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYT 387 (473)
Q Consensus 312 ~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~p---q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 387 (473)
+. .+-+.+.+.. ..+++.+.++++ ...+++.+++ +|+-+| |.+.||.++|+|+|+..-..+++.
T Consensus 273 ~~---------~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~--vv~~SG-g~~~EA~a~G~PvV~~~~~~~~~e 340 (396)
T 3dzc_A 273 NP---------NVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHI--ILTDSG-GIQEEAPSLGKPVLVMRETTERPE 340 (396)
T ss_dssp CH---------HHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSE--EEESCS-GGGTTGGGGTCCEEECCSSCSCHH
T ss_pred Ch---------HHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCE--EEECCc-cHHHHHHHcCCCEEEccCCCcchH
Confidence 21 0112222221 235788877775 4568888997 999988 666799999999999855555432
Q ss_pred hHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHH
Q 042753 388 NAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKAR 434 (473)
Q Consensus 388 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~ 434 (473)
+.+. |.++.+. . +.++|.+++.++++|+ ..+++..
T Consensus 341 ----~v~~-G~~~lv~---~---d~~~l~~ai~~ll~d~-~~~~~m~ 375 (396)
T 3dzc_A 341 ----AVAA-GTVKLVG---T---NQQQICDALSLLLTDP-QAYQAMS 375 (396)
T ss_dssp ----HHHH-TSEEECT---T---CHHHHHHHHHHHHHCH-HHHHHHH
T ss_pred ----HHHc-CceEEcC---C---CHHHHHHHHHHHHcCH-HHHHHHh
Confidence 2335 8886654 2 6999999999999987 6554443
No 29
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.32 E-value=8e-10 Score=108.66 Aligned_cols=345 Identities=13% Similarity=0.067 Sum_probs=182.7
Q ss_pred CccEEEEEcC---CC-CCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 4 AGAHILVYPF---PT-SGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 4 ~~~~Il~~~~---~~-~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
.||||+++.. +. .|.-.-...+++.|.++||+|++++.......+..... ..+ .+..++.. ...
T Consensus 19 ~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~--------~~~ 86 (406)
T 2gek_A 19 SHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVV---SGG-KAVPIPYN--------GSV 86 (406)
T ss_dssp --CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEE---ECC-CCC----------------
T ss_pred CcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccc---cCC-cEEecccc--------CCc
Confidence 3899998773 22 46668899999999999999999998754321111100 001 11112210 000
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCC
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDN 157 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 157 (473)
..+. ........+.+++++. +||+|++..... .+..+++..++|+|........
T Consensus 87 ~~~~--~~~~~~~~l~~~l~~~--~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~-------------------- 142 (406)
T 2gek_A 87 ARLR--FGPATHRKVKKWIAEG--DFDVLHIHEPNAPSLSMLALQAAEGPIVATFHTSTT-------------------- 142 (406)
T ss_dssp ------CCHHHHHHHHHHHHHH--CCSEEEEECCCSSSHHHHHHHHEESSEEEEECCCCC--------------------
T ss_pred cccc--ccHHHHHHHHHHHHhc--CCCEEEECCccchHHHHHHHHhcCCCEEEEEcCcch--------------------
Confidence 0000 0001234567778888 999999876644 3456677779999875333110
Q ss_pred CCccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHH-hhhccCCcEEeecchHHhhHHHHHHHHHhhCCCcEEEe
Q 042753 158 VDALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSN-MMANKTSWGIVFNSFAELERVYIDHMKKEMGHDRVWAV 236 (473)
Q Consensus 158 ~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~~~~~~v 236 (473)
.. . ....+.+. .......+.++..|-...+ .+...++.+++ .+
T Consensus 143 -----------------~~---~----------~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~~~~~~~~~~-vi 186 (406)
T 2gek_A 143 -----------------KS---L----------TLSVFQGILRPYHEKIIGRIAVSDLARR-----WQMEALGSDAV-EI 186 (406)
T ss_dssp -----------------SH---H----------HHHHHHSTTHHHHTTCSEEEESSHHHHH-----HHHHHHSSCEE-EC
T ss_pred -----------------hh---h----------hHHHHHHHHHHHHhhCCEEEECCHHHHH-----HHHHhcCCCcE-Ee
Confidence 00 0 00000000 1233455666666532221 22223331334 44
Q ss_pred ccCCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCc-cc-CCHHHHHHHHHHHHhC--CCcEEEEEeCC
Q 042753 237 GPVLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSR-YV-LTAKQIHELAAALEKT--DVDFVYCVREP 312 (473)
Q Consensus 237 Gpl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~-~~-~~~~~~~~~~~al~~~--~~~~i~~~~~~ 312 (473)
..-+... . ... ..... .. .....+++..|+. .. ...+.+-+.+..+.+. +.++ ..++..
T Consensus 187 ~~~v~~~-~----~~~----~~~~~------~~-~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~l-~i~G~~ 249 (406)
T 2gek_A 187 PNGVDVA-S----FAD----APLLD------GY-PREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPDVEI-LIVGRG 249 (406)
T ss_dssp CCCBCHH-H----HHT----CCCCT------TC-SCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTTCEE-EEESCS
T ss_pred cCCCChh-h----cCC----Cchhh------hc-cCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCCeEE-EEEcCC
Confidence 4322211 0 000 00000 00 1123567777887 43 2334444444444332 3343 344443
Q ss_pred CccCCcccCCCCchhhHHhhc--CCCeEeecCccHH---HhhhccCccceee----ccC-chhHHHHHhhCCeEecCccc
Q 042753 313 DERHASQDCGVLPDGFEDRVA--GRGYVIRGWSQQV---AILRHKAVGAFLT----HCG-WNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 313 ~~~~~~~~~~~lp~~~~~~~~--~~nv~v~~~~pq~---~lL~~~~v~~~It----HgG-~~s~~eal~~GvP~l~~P~~ 382 (473)
. . +.+.+... .+++.+.+++++. +++..+++ +|. +.| .+++.||+++|+|+|+.+.
T Consensus 250 ~---------~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~- 315 (406)
T 2gek_A 250 D---------E--DELREQAGDLAGHLRFLGQVDDATKASAMRSADV--YCAPHLGGESFGIVLVEAMAAGTAVVASDL- 315 (406)
T ss_dssp C---------H--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSE--EEECCCSCCSSCHHHHHHHHHTCEEEECCC-
T ss_pred c---------H--HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCE--EEecCCCCCCCchHHHHHHHcCCCEEEecC-
Confidence 1 1 33333222 4688899999874 68888998 553 334 4489999999999999765
Q ss_pred ccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 383 ADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
......+.+. +.|...+ .-+.+++.++|.++++|+ ..+++.. +..++.+. .-+.+..++++++.+.
T Consensus 316 ---~~~~e~i~~~-~~g~~~~-----~~d~~~l~~~i~~l~~~~-~~~~~~~---~~~~~~~~-~~s~~~~~~~~~~~~~ 381 (406)
T 2gek_A 316 ---DAFRRVLADG-DAGRLVP-----VDDADGMAAALIGILEDD-QLRAGYV---ARASERVH-RYDWSVVSAQIMRVYE 381 (406)
T ss_dssp ---HHHHHHHTTT-TSSEECC-----TTCHHHHHHHHHHHHHCH-HHHHHHH---HHHHHHGG-GGBHHHHHHHHHHHHH
T ss_pred ---CcHHHHhcCC-CceEEeC-----CCCHHHHHHHHHHHHcCH-HHHHHHH---HHHHHHHH-hCCHHHHHHHHHHHHH
Confidence 4455555533 5787776 347899999999999987 5443322 22222223 4567777778877777
Q ss_pred hhc
Q 042753 463 ELK 465 (473)
Q Consensus 463 ~~~ 465 (473)
+..
T Consensus 382 ~~~ 384 (406)
T 2gek_A 382 TVS 384 (406)
T ss_dssp HHC
T ss_pred HHH
Confidence 663
No 30
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.32 E-value=1.4e-11 Score=120.44 Aligned_cols=163 Identities=17% Similarity=0.171 Sum_probs=99.2
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh----C-CCcEEEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEK----T-DVDFVYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq 345 (473)
++++|+++.|......+ .+..+++++++ . +.++++..+.+ ..+-+.+.+... .+++.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~k-g~~~li~a~~~l~~~~~~~~l~i~~g~~---------~~~~~~l~~~~~~~~~v~~~g~~~~ 273 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGR-GFEEICHALADIATTHQDIQIVYPVHLN---------PNVREPVNRILGHVKNVILIDPQEY 273 (384)
T ss_dssp TSEEEEEECCCBSSCCH-HHHHHHHHHHHHHHHCTTEEEEEECCBC---------HHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred CCCEEEEEeCCccccch-HHHHHHHHHHHHHhhCCCeEEEEEcCCC---------HHHHHHHHHHhhcCCCEEEeCCCCH
Confidence 46778888887754322 34445555543 2 44555533322 001122322222 357888666664
Q ss_pred ---HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 346 ---VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 346 ---~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
.++++.+++ ||+.+| +.+.||+++|+|+|+.+..++... +.+. |.|+.++ . +.++|.++|.++
T Consensus 274 ~~~~~~~~~ad~--~v~~Sg-~~~lEA~a~G~PvI~~~~~~~~~e----~v~~-g~g~lv~---~---d~~~la~~i~~l 339 (384)
T 1vgv_A 274 LPFVWLMNHAWL--ILTDSG-GIQEEAPSLGKPVLVMRDTTERPE----AVTA-GTVRLVG---T---DKQRIVEEVTRL 339 (384)
T ss_dssp HHHHHHHHHCSE--EEESSS-TGGGTGGGGTCCEEEESSCCSCHH----HHHH-TSEEEEC---S---SHHHHHHHHHHH
T ss_pred HHHHHHHHhCcE--EEECCc-chHHHHHHcCCCEEEccCCCCcch----hhhC-CceEEeC---C---CHHHHHHHHHHH
Confidence 567899997 898885 448899999999999987444333 3435 8898887 3 899999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 423 VDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 423 l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
++|+ ..+++.. +..++. ....+.++.++.+.+.+++
T Consensus 340 l~d~-~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~~~ 375 (384)
T 1vgv_A 340 LKDE-NEYQAMS---RAHNPY-GDGQACSRILEALKNNRIS 375 (384)
T ss_dssp HHCH-HHHHHHH---SSCCTT-CCSCHHHHHHHHHHHTCCC
T ss_pred HhCh-HHHhhhh---hccCCC-cCCCHHHHHHHHHHHHHHh
Confidence 9986 5443332 222222 2345555555555554433
No 31
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.29 E-value=3.3e-12 Score=125.64 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=100.9
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh-----CCCcEEEEEeCCCccCCcccCCCCchhhHHhh-cCCCeEeecCccH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEK-----TDVDFVYCVREPDERHASQDCGVLPDGFEDRV-AGRGYVIRGWSQQ 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~-----~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~nv~v~~~~pq 345 (473)
++++++++.|....... .+..+++++.+ .+.++++..+.+. .+-+.+.+.. ..+++.+.+++++
T Consensus 223 ~~~~vlv~~~r~~~~~~-~l~~ll~a~~~l~~~~~~~~~v~~~~~~~---------~~~~~l~~~~~~~~~v~l~~~l~~ 292 (403)
T 3ot5_A 223 DNRLILMTAHRRENLGE-PMQGMFEAVREIVESREDTELVYPMHLNP---------AVREKAMAILGGHERIHLIEPLDA 292 (403)
T ss_dssp TCEEEEECCCCHHHHTT-HHHHHHHHHHHHHHHCTTEEEEEECCSCH---------HHHHHHHHHHTTCTTEEEECCCCH
T ss_pred CCCEEEEEeCcccccCc-HHHHHHHHHHHHHHhCCCceEEEecCCCH---------HHHHHHHHHhCCCCCEEEeCCCCH
Confidence 56788887665332221 23455555543 3456666544321 1112222212 2358888898864
Q ss_pred ---HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 346 ---VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 346 ---~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
..+++.+++ +|+.+|..+ .||.++|+|+|++|...+++.. + +. |.|+.+. .+.++|.+++.++
T Consensus 293 ~~~~~l~~~ad~--vv~~SGg~~-~EA~a~g~PvV~~~~~~~~~e~---v-~~-g~~~lv~------~d~~~l~~ai~~l 358 (403)
T 3ot5_A 293 IDFHNFLRKSYL--VFTDSGGVQ-EEAPGMGVPVLVLRDTTERPEG---I-EA-GTLKLIG------TNKENLIKEALDL 358 (403)
T ss_dssp HHHHHHHHHEEE--EEECCHHHH-HHGGGTTCCEEECCSSCSCHHH---H-HH-TSEEECC------SCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCE--EEECCccHH-HHHHHhCCCEEEecCCCcchhh---e-eC-CcEEEcC------CCHHHHHHHHHHH
Confidence 457888997 898875333 7999999999999766666542 3 35 8887765 2799999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 423 VDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 423 l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
++|+ ..+++..+-...+ .+|+++++.++.+.+++.
T Consensus 359 l~~~-~~~~~m~~~~~~~----g~~~aa~rI~~~l~~~l~ 393 (403)
T 3ot5_A 359 LDNK-ESHDKMAQAANPY----GDGFAANRILAAIKSHFE 393 (403)
T ss_dssp HHCH-HHHHHHHHSCCTT----CCSCHHHHHHHHHHHHHT
T ss_pred HcCH-HHHHHHHhhcCcc----cCCcHHHHHHHHHHHHhC
Confidence 9987 6655443322222 456667776666666554
No 32
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.24 E-value=1.2e-08 Score=101.24 Aligned_cols=161 Identities=12% Similarity=0.088 Sum_probs=100.3
Q ss_pred EEEEEeCCcc-c-CCHHHHHHHHHHHHhCC--CcEE-EEEeCCCccCCcccCCCCchhhHH---hhcCCCeEeecCccHH
Q 042753 275 VVYVCFGSRY-V-LTAKQIHELAAALEKTD--VDFV-YCVREPDERHASQDCGVLPDGFED---RVAGRGYVIRGWSQQV 346 (473)
Q Consensus 275 ~V~vs~Gs~~-~-~~~~~~~~~~~al~~~~--~~~i-~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~nv~v~~~~pq~ 346 (473)
.+++..|+.. . ...+.+-+.+..+.+.. ..+- +.++... +...+.+.+ +.. .++...+|+|+.
T Consensus 252 ~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g~--------~~~~~~l~~~~~~~~-~~~~~~g~~~~~ 322 (439)
T 3fro_A 252 VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGD--------PELEGWARSLEEKHG-NVKVITEMLSRE 322 (439)
T ss_dssp EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCCC--------HHHHHHHHHHHHHCT-TEEEECSCCCHH
T ss_pred cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCCC--------hhHHHHHHHHHhhcC-CEEEEcCCCCHH
Confidence 7888889886 3 34555555555555432 2233 3334321 101122222 222 456677889885
Q ss_pred H---hhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 347 A---ILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 347 ~---lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
+ ++..+++ +|. -|-.+++.||+++|+|+|+... ......+. . |.|..++ .-+.+++.++|
T Consensus 323 ~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~Pvi~s~~----~~~~e~~~-~-~~g~~~~-----~~d~~~la~~i 389 (439)
T 3fro_A 323 FVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAV----GGLRDIIT-N-ETGILVK-----AGDPGELANAI 389 (439)
T ss_dssp HHHHHHTTCSE--EEECBSCCSSCHHHHHHHHTTCEEEEESS----THHHHHCC-T-TTCEEEC-----TTCHHHHHHHH
T ss_pred HHHHHHHHCCE--EEeCCCCCCccHHHHHHHHCCCCeEEcCC----CCcceeEE-c-CceEEeC-----CCCHHHHHHHH
Confidence 4 6788887 553 2445799999999999998643 34444443 4 7888887 35789999999
Q ss_pred HHHhC-Cc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 420 AQSVD-GP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 420 ~~~l~-~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
.++++ ++ ..+.+++++..+ .-+.+..++++++.+++.-
T Consensus 390 ~~ll~~~~~~~~~~~~~~~~~~~--------~~s~~~~~~~~~~~~~~~~ 431 (439)
T 3fro_A 390 LKALELSRSDLSKFRENCKKRAM--------SFSWEKSAERYVKAYTGSI 431 (439)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHH--------TSCHHHHHHHHHHHHHTCS
T ss_pred HHHHhcCHHHHHHHHHHHHHHHh--------hCcHHHHHHHHHHHHHHHH
Confidence 99998 65 234444433332 2567788888888887763
No 33
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.22 E-value=6e-09 Score=105.60 Aligned_cols=115 Identities=13% Similarity=0.070 Sum_probs=74.3
Q ss_pred CCCeEeecCccHH---Hhhhcc----Cccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEe
Q 042753 334 GRGYVIRGWSQQV---AILRHK----AVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRV 402 (473)
Q Consensus 334 ~~nv~v~~~~pq~---~lL~~~----~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l 402 (473)
.++|.+.+++|+. +++..+ ++ +|.- |-..+++||+++|+|+|+... ......+. .-..|..+
T Consensus 334 ~~~V~~~G~v~~~~~~~~~~~a~~~~dv--~v~pS~~Eg~~~~~lEAma~G~PvI~s~~----~g~~e~v~-~~~~g~l~ 406 (499)
T 2r60_A 334 RGKVSMFPLNSQQELAGCYAYLASKGSV--FALTSFYEPFGLAPVEAMASGLPAVVTRN----GGPAEILD-GGKYGVLV 406 (499)
T ss_dssp BTTEEEEECCSHHHHHHHHHHHHHTTCE--EEECCSCBCCCSHHHHHHHTTCCEEEESS----BHHHHHTG-GGTSSEEE
T ss_pred CceEEECCCCCHHHHHHHHHhcCcCCCE--EEECcccCCCCcHHHHHHHcCCCEEEecC----CCHHHHhc-CCceEEEe
Confidence 4578889999765 467788 87 5532 335689999999999998753 34444454 41478888
Q ss_pred ccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 403 GEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 403 ~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+ .-+.+++.++|.++++|+ ..+++.. +..++.+...-+.+..++++++.+.+.
T Consensus 407 ~-----~~d~~~la~~i~~ll~~~-~~~~~~~---~~a~~~~~~~fs~~~~~~~~~~~y~~~ 459 (499)
T 2r60_A 407 D-----PEDPEDIARGLLKAFESE-ETWSAYQ---EKGKQRVEERYTWQETARGYLEVIQEI 459 (499)
T ss_dssp C-----TTCHHHHHHHHHHHHSCH-HHHHHHH---HHHHHHHHHHSBHHHHHHHHHHHHHHH
T ss_pred C-----CCCHHHHHHHHHHHHhCH-HHHHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 7 357899999999999987 4333222 111111122244566666666665554
No 34
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.22 E-value=2e-08 Score=98.37 Aligned_cols=353 Identities=9% Similarity=0.036 Sum_probs=182.1
Q ss_pred cEEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTS-GHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
.++....+|.. |.-.-...|++.|.++||+|++++...... .... .+++.+..++......... .. ..+
T Consensus 16 ~~~~~~~~p~~GG~~~~~~~la~~L~~~G~~V~v~~~~~~~~-~~~~-----~~~i~~~~~~~~~~~~~~~-~~-~~~-- 85 (394)
T 2jjm_A 16 LKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFR-LNKV-----YPNIYFHEVTVNQYSVFQY-PP-YDL-- 85 (394)
T ss_dssp CEEEEECCC--CHHHHHHHHHHHHHHHTTCEEEEECSSCC-----CC-----CTTEEEECCCCC----CCS-CC-HHH--
T ss_pred eeeehhcCCCCCCHHHHHHHHHHHHHhCCCEEEEEeCCCCCc-cccc-----CCceEEEeccccccccccc-cc-ccH--
Confidence 56766666655 666778899999999999999999864321 1111 1356666554321110100 00 000
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh---CCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCC
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL---GLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVD 159 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~---giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 159 (473)
.....+.+++++. +||+|++..... ....++..+ ++|+|......... ..
T Consensus 86 ----~~~~~l~~~l~~~--~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------~~------------- 140 (394)
T 2jjm_A 86 ----ALASKMAEVAQRE--NLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDIT------VL------------- 140 (394)
T ss_dssp ----HHHHHHHHHHHHH--TCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHH------TT-------------
T ss_pred ----HHHHHHHHHHHHc--CCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCccc------cc-------------
Confidence 2234566677778 999999875433 233444443 59987754332110 00
Q ss_pred ccccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHHhhCC-CcEEEecc
Q 042753 160 ALVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKKEMGH-DRVWAVGP 238 (473)
Q Consensus 160 ~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~~~~~-~~~~~vGp 238 (473)
+. ......... ......+.++..|-... +.+...++. .++..+..
T Consensus 141 ------~~--------------------~~~~~~~~~---~~~~~ad~ii~~s~~~~-----~~~~~~~~~~~~~~vi~n 186 (394)
T 2jjm_A 141 ------GS--------------------DPSLNNLIR---FGIEQSDVVTAVSHSLI-----NETHELVKPNKDIQTVYN 186 (394)
T ss_dssp ------TT--------------------CTTTHHHHH---HHHHHSSEEEESCHHHH-----HHHHHHTCCSSCEEECCC
T ss_pred ------CC--------------------CHHHHHHHH---HHHhhCCEEEECCHHHH-----HHHHHhhCCcccEEEecC
Confidence 00 000111111 12334556665553221 122222220 36666664
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCccc-CCHHHHHHHHHHHHhC-CCcEEEEEeCCCccC
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYV-LTAKQIHELAAALEKT-DVDFVYCVREPDERH 316 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~ 316 (473)
-+... . ......+.+.+.+.- +.+..+++..|+... ...+.+-+.+..+.+. +.++ +.++...
T Consensus 187 gv~~~-~---------~~~~~~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l-~i~G~g~--- 251 (394)
T 2jjm_A 187 FIDER-V---------YFKRDMTQLKKEYGI-SESEKILIHISNFRKVKRVQDVVQAFAKIVTEVDAKL-LLVGDGP--- 251 (394)
T ss_dssp CCCTT-T---------CCCCCCHHHHHHTTC-C---CEEEEECCCCGGGTHHHHHHHHHHHHHSSCCEE-EEECCCT---
T ss_pred CccHH-h---------cCCcchHHHHHHcCC-CCCCeEEEEeeccccccCHHHHHHHHHHHHhhCCCEE-EEECCch---
Confidence 44332 1 001122333333332 134456667788753 2334443444444333 4443 4444321
Q ss_pred CcccCCCCchhhHHhhc----CCCeEeecCccH-HHhhhccCcccee----eccCchhHHHHHhhCCeEecCcccccchh
Q 042753 317 ASQDCGVLPDGFEDRVA----GRGYVIRGWSQQ-VAILRHKAVGAFL----THCGWNSVLEGVSAGVVMLTWPMDADQYT 387 (473)
Q Consensus 317 ~~~~~~~lp~~~~~~~~----~~nv~v~~~~pq-~~lL~~~~v~~~I----tHgG~~s~~eal~~GvP~l~~P~~~DQ~~ 387 (473)
..+.+.+... .+++.+.++..+ .+++..+++ +| .-|..+++.||+++|+|+|+.+.. .
T Consensus 252 -------~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~adv--~v~ps~~e~~~~~~~EAma~G~PvI~~~~~----~ 318 (394)
T 2jjm_A 252 -------EFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDL--MLLLSEKESFGLVLLEAMACGVPCIGTRVG----G 318 (394)
T ss_dssp -------THHHHHHHHHTTTCGGGBCCCBSCSCTHHHHHTCSE--EEECCSCCSCCHHHHHHHHTTCCEEEECCT----T
T ss_pred -------HHHHHHHHHHHcCCCCeEEEeCchhhHHHHHHhCCE--EEeccccCCCchHHHHHHhcCCCEEEecCC----C
Confidence 1122322222 246766676543 568888997 66 556678999999999999997653 2
Q ss_pred hHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 388 NAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 388 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
....+.+. +.|...+ .-+.+++.++|.++++|+ ..+++.. +..++.+...-+.+..++++++.+++..
T Consensus 319 ~~e~v~~~-~~g~~~~-----~~d~~~la~~i~~l~~~~-~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 386 (394)
T 2jjm_A 319 IPEVIQHG-DTGYLCE-----VGDTTGVADQAIQLLKDE-ELHRNMG---ERARESVYEQFRSEKIVSQYETIYYDVL 386 (394)
T ss_dssp STTTCCBT-TTEEEEC-----TTCHHHHHHHHHHHHHCH-HHHHHHH---HHHHHHHHHHSCHHHHHHHHHHHHHHTC
T ss_pred hHHHhhcC-CceEEeC-----CCCHHHHHHHHHHHHcCH-HHHHHHH---HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 23333322 5787776 347899999999999986 4333222 1222111233557777888888777763
No 35
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.14 E-value=5.9e-10 Score=108.45 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=94.5
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHh----C-CCcEEEEEeCCCccCCcccCCCCchhhHHhhc-CCCeEeecCccH
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEK----T-DVDFVYCVREPDERHASQDCGVLPDGFEDRVA-GRGYVIRGWSQQ 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~----~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~nv~v~~~~pq 345 (473)
++++|+++.|...... +.+..+++++++ . +.++++ +... . ..+-+.+.+... .+++.+.+++++
T Consensus 204 ~~~~vl~~~gr~~~~~-K~~~~li~a~~~l~~~~~~~~~i~--~~g~----~---~~~~~~~~~~~~~~~~v~~~g~~~~ 273 (375)
T 3beo_A 204 NNRLVLMTAHRRENLG-EPMRNMFRAIKRLVDKHEDVQVVY--PVHM----N---PVVRETANDILGDYGRIHLIEPLDV 273 (375)
T ss_dssp TSEEEEEECCCGGGTT-HHHHHHHHHHHHHHHHCTTEEEEE--ECCS----C---HHHHHHHHHHHTTCTTEEEECCCCH
T ss_pred CCCeEEEEecccccch-hHHHHHHHHHHHHHhhCCCeEEEE--eCCC----C---HHHHHHHHHHhhccCCEEEeCCCCH
Confidence 4567778888765322 234556666543 2 344433 3221 0 001122222222 268888777765
Q ss_pred ---HHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 346 ---VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 346 ---~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
.++++.+++ +|+.+| +.+.||+++|+|+|+....+..+. +.+. |.|..++ . +.++|.++|.++
T Consensus 274 ~~~~~~~~~ad~--~v~~sg-~~~lEA~a~G~Pvi~~~~~~~~~e----~v~~-g~g~~v~-----~-d~~~la~~i~~l 339 (375)
T 3beo_A 274 IDFHNVAARSYL--MLTDSG-GVQEEAPSLGVPVLVLRDTTERPE----GIEA-GTLKLAG-----T-DEETIFSLADEL 339 (375)
T ss_dssp HHHHHHHHTCSE--EEECCH-HHHHHHHHHTCCEEECSSCCSCHH----HHHT-TSEEECC-----S-CHHHHHHHHHHH
T ss_pred HHHHHHHHhCcE--EEECCC-ChHHHHHhcCCCEEEecCCCCCce----eecC-CceEEcC-----C-CHHHHHHHHHHH
Confidence 467888997 888774 558899999999998854333322 3335 8887775 2 789999999999
Q ss_pred hCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 423 VDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 423 l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
++|+ ..+++.. +..++. ..+.+.++.++.+.+.+
T Consensus 340 l~~~-~~~~~~~---~~~~~~-~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 340 LSDK-EAHDKMS---KASNPY-GDGRASERIVEAILKHF 373 (375)
T ss_dssp HHCH-HHHHHHC---CCCCTT-CCSCHHHHHHHHHHHHT
T ss_pred HhCh-HhHhhhh---hcCCCC-CCCcHHHHHHHHHHHHh
Confidence 9986 5544332 222222 23455555555555443
No 36
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.12 E-value=2.9e-10 Score=110.81 Aligned_cols=349 Identities=11% Similarity=0.048 Sum_probs=182.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-hhhhhccCCCCCCeeEEEcCCCCCCCCC-ChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-LLDSLNANHPSTSLQSLVLPQPKWPAGS-PATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~f~~l~~~~~~~~~-~~~~~~~~ 82 (473)
|-|++++ ++++-.+.=+.+|.++|.++ ++..++.+....+ .+.+... .++.+ +.+. -.+. .... .
T Consensus 9 ~~~~~~v-~GtRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~----~~~~i---~~~~-~~l~~~~~~---~ 75 (385)
T 4hwg_A 9 MLKVMTI-VGTRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFF----DDMGI---RKPD-YFLEVAADN---T 75 (385)
T ss_dssp CCEEEEE-ECSHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHH----C-CCC---CCCS-EECCCCCCC---S
T ss_pred hhheeEE-EEcCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHH----hhCCC---CCCc-eecCCCCCC---H
Confidence 6666554 45777777888888999887 8888877765433 3333210 12222 1111 0011 0111 1
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEe--CCCcchHHHHHHHhCCCcEEEecchHHHHHHHHhhhccCCCCCCCCCCCc
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILS--DFFLGWTQGLAAELGLPRVVFSPSGAFALSVSFAMWTDLPTNDDPDNVDA 160 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~--D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (473)
...+. .....+.+++++. +||+|++ |....++..+|.++|||++.+....
T Consensus 76 ~~~~~-~~~~~l~~~l~~~--kPD~Vlv~gd~~~~~aalaA~~~~IPv~h~eagl------------------------- 127 (385)
T 4hwg_A 76 AKSIG-LVIEKVDEVLEKE--KPDAVLFYGDTNSCLSAIAAKRRKIPIFHMEAGN------------------------- 127 (385)
T ss_dssp HHHHH-HHHHHHHHHHHHH--CCSEEEEESCSGGGGGHHHHHHTTCCEEEESCCC-------------------------
T ss_pred HHHHH-HHHHHHHHHHHhc--CCcEEEEECCchHHHHHHHHHHhCCCEEEEeCCC-------------------------
Confidence 22222 3456778889999 9999986 3334455888999999976542110
Q ss_pred cccCCCCCCCCCCCccccchhhhccCCCCCchHHHHHHhhhccCCcEEeecchHHhhHHHHHHHHH-hhCCCcEEEec-c
Q 042753 161 LVSFPRVPNCPVYPWYQISHLYRTLKEGDPDWDLHRSNMMANKTSWGIVFNSFAELERVYIDHMKK-EMGHDRVWAVG-P 238 (473)
Q Consensus 161 ~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~le~~~~~~~~~-~~~~~~~~~vG-p 238 (473)
.+ .. ........+...... .+.++..+-..- +.+.. -.+..+++.+| |
T Consensus 128 -------rs---~~-------------~~~pee~nR~~~~~~--a~~~~~~te~~~-----~~l~~~G~~~~~I~vtGnp 177 (385)
T 4hwg_A 128 -------RC---FD-------------QRVPEEINRKIIDHI--SDVNITLTEHAR-----RYLIAEGLPAELTFKSGSH 177 (385)
T ss_dssp -------CC---SC-------------TTSTHHHHHHHHHHH--CSEEEESSHHHH-----HHHHHTTCCGGGEEECCCS
T ss_pred -------cc---cc-------------ccCcHHHHHHHHHhh--hceeecCCHHHH-----HHHHHcCCCcCcEEEECCc
Confidence 00 00 000001111111111 122233332111 11111 11103688898 4
Q ss_pred CCCCCCcchhhccCCCCCCCChhhhHHHhcCCCCCcEEEEEeCCcccCC-HHHHHHHHHHHHhC----CCcEEEEEeCCC
Q 042753 239 VLPPDDDLVESMCRGGSSSVPAHDVLTWLDSRRDESVVYVCFGSRYVLT-AKQIHELAAALEKT----DVDFVYCVREPD 313 (473)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~V~vs~Gs~~~~~-~~~~~~~~~al~~~----~~~~i~~~~~~~ 313 (473)
..... . .... ....+++.+.++- ..++.|+++.|...... .+.+..+++++.+. +.++|+......
T Consensus 178 ~~D~~-~----~~~~---~~~~~~~~~~lgl-~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~~~~vv~p~~p~~ 248 (385)
T 4hwg_A 178 MPEVL-D----RFMP---KILKSDILDKLSL-TPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEYNFLIIFSTHPRT 248 (385)
T ss_dssp HHHHH-H----HHHH---HHHHCCHHHHTTC-CTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHHCCEEEEEECHHH
T ss_pred hHHHH-H----Hhhh---hcchhHHHHHcCC-CcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcCCeEEEEECChHH
Confidence 33321 1 0000 0011233444443 23678999988764432 24556677776542 567777554211
Q ss_pred ccCCcccCCCCchhhHHh---h-cCCCeEeecCcc---HHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccch
Q 042753 314 ERHASQDCGVLPDGFEDR---V-AGRGYVIRGWSQ---QVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQY 386 (473)
Q Consensus 314 ~~~~~~~~~~lp~~~~~~---~-~~~nv~v~~~~p---q~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~ 386 (473)
-+.+.+. . ..+++.+.+.++ ...+++++++ +||-+|. .+.||.+.|+|+|+++...+-+
T Consensus 249 -----------~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adl--vvt~SGg-v~~EA~alG~Pvv~~~~~ter~ 314 (385)
T 4hwg_A 249 -----------KKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFC--ILSDSGT-ITEEASILNLPALNIREAHERP 314 (385)
T ss_dssp -----------HHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSE--EEECCTT-HHHHHHHTTCCEEECSSSCSCT
T ss_pred -----------HHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcE--EEECCcc-HHHHHHHcCCCEEEcCCCccch
Confidence 0111111 1 125777766655 4568899997 9999876 4699999999999998654422
Q ss_pred hhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 042753 387 TNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRIN 462 (473)
Q Consensus 387 ~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~ 462 (473)
. .+. . |.++.+. .+.++|.+++.++++|+ ...++..+-...+- .+|+++++.++.+.+++.
T Consensus 315 e---~v~-~-G~~~lv~------~d~~~i~~ai~~ll~d~-~~~~~m~~~~~~~~---g~g~aa~rI~~~l~~~~~ 375 (385)
T 4hwg_A 315 E---GMD-A-GTLIMSG------FKAERVLQAVKTITEEH-DNNKRTQGLVPDYN---EAGLVSKKILRIVLSYVD 375 (385)
T ss_dssp H---HHH-H-TCCEECC------SSHHHHHHHHHHHHTTC-BTTBCCSCCCHHHH---TCCCHHHHHHHHHHHHHH
T ss_pred h---hhh-c-CceEEcC------CCHHHHHHHHHHHHhCh-HHHHHhhccCCCCC---CCChHHHHHHHHHHHHhh
Confidence 2 233 5 8887665 37999999999999986 32211111011110 356667777666666543
No 37
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.08 E-value=7.2e-09 Score=100.59 Aligned_cols=145 Identities=14% Similarity=0.211 Sum_probs=92.9
Q ss_pred hhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCC----c-EEEEEeCCCccCCcccCCCCchhhHH---hhc
Q 042753 262 DVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDV----D-FVYCVREPDERHASQDCGVLPDGFED---RVA 333 (473)
Q Consensus 262 ~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~----~-~i~~~~~~~~~~~~~~~~~lp~~~~~---~~~ 333 (473)
.+.+.+.- .+++.+++..|+... ......++++++.... . -++.++... + +.+.+ +..
T Consensus 185 ~~~~~~~~-~~~~~~i~~~G~~~~--~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~--------~---~~~~~~~~~~~ 250 (374)
T 2iw1_A 185 IYRQKNGI-KEQQNLLLQVGSDFG--RKGVDRSIEALASLPESLRHNTLLFVVGQDK--------P---RKFEALAEKLG 250 (374)
T ss_dssp HHHHHTTC-CTTCEEEEEECSCTT--TTTHHHHHHHHHTSCHHHHHTEEEEEESSSC--------C---HHHHHHHHHHT
T ss_pred HHHHHhCC-CCCCeEEEEeccchh--hcCHHHHHHHHHHhHhccCCceEEEEEcCCC--------H---HHHHHHHHHcC
Confidence 34444433 245567778888753 2334556677765432 2 334445431 1 22322 222
Q ss_pred -CCCeEeecCccH-HHhhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCC
Q 042753 334 -GRGYVIRGWSQQ-VAILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTR 407 (473)
Q Consensus 334 -~~nv~v~~~~pq-~~lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 407 (473)
.+++.+.++..+ .+++..+++ +|. -|..+++.||+++|+|+|+.+. ..+...+.+. +.|..+.
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~---- 319 (374)
T 2iw1_A 251 VRSNVHFFSGRNDVSELMAAADL--LLHPAYQEAAGIVLLEAITAGLPVLTTAV----CGYAHYIADA-NCGTVIA---- 319 (374)
T ss_dssp CGGGEEEESCCSCHHHHHHHCSE--EEECCSCCSSCHHHHHHHHHTCCEEEETT----STTTHHHHHH-TCEEEEC----
T ss_pred CCCcEEECCCcccHHHHHHhcCE--EEeccccCCcccHHHHHHHCCCCEEEecC----CCchhhhccC-CceEEeC----
Confidence 357888787654 558888997 665 5677899999999999999754 3456667644 7898885
Q ss_pred CCCCHHHHHHHHHHHhCCcHHHHHH
Q 042753 408 NIPESDELARLLAQSVDGPRRERLK 432 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (473)
..-+.+++.++|.++++|+ ..+++
T Consensus 320 ~~~~~~~l~~~i~~l~~~~-~~~~~ 343 (374)
T 2iw1_A 320 EPFSQEQLNEVLRKALTQS-PLRMA 343 (374)
T ss_dssp SSCCHHHHHHHHHHHHHCH-HHHHH
T ss_pred CCCCHHHHHHHHHHHHcCh-HHHHH
Confidence 2357999999999999987 44433
No 38
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=98.95 E-value=2.2e-07 Score=91.66 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=73.8
Q ss_pred CCCeEeecCcc---H---HHhhhccCccceeecc----CchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 334 GRGYVIRGWSQ---Q---VAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 334 ~~nv~v~~~~p---q---~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
.+++.+.+|++ + .+++..+++ +|.-+ ..+++.||+++|+|+|+.+. ..+...+.+. +.|...+
T Consensus 292 ~~~V~~~G~~~~~~~~~~~~~~~~ad~--~v~ps~~E~~~~~~lEAma~G~PvI~~~~----~g~~e~i~~~-~~g~l~~ 364 (416)
T 2x6q_A 292 DYDVKVLTNLIGVHAREVNAFQRASDV--ILQMSIREGFGLTVTEAMWKGKPVIGRAV----GGIKFQIVDG-ETGFLVR 364 (416)
T ss_dssp CTTEEEEEGGGTCCHHHHHHHHHHCSE--EEECCSSCSSCHHHHHHHHTTCCEEEESC----HHHHHHCCBT-TTEEEES
T ss_pred CCcEEEecccCCCCHHHHHHHHHhCCE--EEECCCcCCCccHHHHHHHcCCCEEEccC----CCChhheecC-CCeEEEC
Confidence 46888888775 2 347788887 66543 46789999999999999764 3445555422 5676553
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 404 EGTRNIPESDELARLLAQSVDGPRRERLKARE-LSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~-~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+.+++.++|.++++|+ ..+++..+ -++.+ .+.-+.+..++++++.+.+
T Consensus 365 -------d~~~la~~i~~ll~~~-~~~~~~~~~a~~~~----~~~fs~~~~~~~~~~~~~~ 413 (416)
T 2x6q_A 365 -------DANEAVEVVLYLLKHP-EVSKEMGAKAKERV----RKNFIITKHMERYLDILNS 413 (416)
T ss_dssp -------SHHHHHHHHHHHHHCH-HHHHHHHHHHHHHH----HHHTBHHHHHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH----HHHcCHHHHHHHHHHHHHH
Confidence 7899999999999987 44333222 12222 2234567777777777665
No 39
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=98.92 E-value=1.4e-08 Score=97.41 Aligned_cols=149 Identities=17% Similarity=0.083 Sum_probs=92.1
Q ss_pred EEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchh---hHHhhcCCCeEeecCccHH---Hhh
Q 042753 276 VYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDG---FEDRVAGRGYVIRGWSQQV---AIL 349 (473)
Q Consensus 276 V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~---~~~~~~~~nv~v~~~~pq~---~lL 349 (473)
+++..|+... .+....++++++..+.++++ ++... ..+. +.++.. +++.+.+|+++. +++
T Consensus 164 ~i~~vG~~~~--~Kg~~~li~a~~~~~~~l~i-~G~g~----------~~~~l~~~~~~~~-~~v~~~g~~~~~~l~~~~ 229 (342)
T 2iuy_A 164 FLLFMGRVSP--HKGALEAAAFAHACGRRLVL-AGPAW----------EPEYFDEITRRYG-STVEPIGEVGGERRLDLL 229 (342)
T ss_dssp CEEEESCCCG--GGTHHHHHHHHHHHTCCEEE-ESCCC----------CHHHHHHHHHHHT-TTEEECCCCCHHHHHHHH
T ss_pred EEEEEecccc--ccCHHHHHHHHHhcCcEEEE-EeCcc----------cHHHHHHHHHHhC-CCEEEeccCCHHHHHHHH
Confidence 4555687752 33345566777666666554 44321 1122 222333 789999999975 688
Q ss_pred hccCccceee--------------ccCchhHHHHHhhCCeEecCcccccchhhHHHHHH--HhcceEEeccCCCCCCCHH
Q 042753 350 RHKAVGAFLT--------------HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVD--QLGVGIRVGEGTRNIPESD 413 (473)
Q Consensus 350 ~~~~v~~~It--------------HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~--~~G~G~~l~~~~~~~~~~~ 413 (473)
..+++ +|. -|-.+++.||+++|+|+|+... ..+...+.+ . +.|...+ . +.+
T Consensus 230 ~~adv--~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~s~~----~~~~e~~~~~~~-~~g~~~~-----~-d~~ 296 (342)
T 2iuy_A 230 ASAHA--VLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVGTGN----GCLAEIVPSVGE-VVGYGTD-----F-APD 296 (342)
T ss_dssp HHCSE--EEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEECCT----TTHHHHGGGGEE-ECCSSSC-----C-CHH
T ss_pred HhCCE--EEECCcccccccccccccCccHHHHHHHhcCCCEEEcCC----CChHHHhcccCC-CceEEcC-----C-CHH
Confidence 88997 552 2334689999999999999865 335555543 2 4565554 4 899
Q ss_pred HHHHHHHHHhCCcHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 414 ELARLLAQSVDGPRRERLKARELS-GAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 414 ~l~~~i~~~l~~~~~~~~~a~~~~-~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
++.++|.++++ .+++++.. +.+ +.+..++++++.+.+.
T Consensus 297 ~l~~~i~~l~~-----~~~~~~~~~~~~--------s~~~~~~~~~~~~~~~ 335 (342)
T 2iuy_A 297 EARRTLAGLPA-----SDEVRRAAVRLW--------GHVTIAERYVEQYRRL 335 (342)
T ss_dssp HHHHHHHTSCC-----HHHHHHHHHHHH--------BHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHhc--------CHHHHHHHHHHHHHHH
Confidence 99999999986 33333332 222 2455556666655554
No 40
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=98.68 E-value=5.9e-06 Score=83.08 Aligned_cols=168 Identities=10% Similarity=0.048 Sum_probs=98.9
Q ss_pred cEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeE-eecCccH--HH
Q 042753 274 SVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYV-IRGWSQQ--VA 347 (473)
Q Consensus 274 ~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~-v~~~~pq--~~ 347 (473)
..+++..|.... ...+.+.+.+..+.+.+.+++++ +... +..-+.+.+... ..+++ ..++... ..
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~iv-G~g~--------~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVL-GAGD--------VALEGALLAAASRHHGRVGVAIGYNEPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEE-ECBC--------HHHHHHHHHHHHHTTTTEEEEESCCHHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEE-eCCc--------hHHHHHHHHHHHhCCCcEEEecCCCHHHHHH
Confidence 347788888854 23344444444444445555544 4321 011122222211 35776 5777433 25
Q ss_pred hhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh---------cceEEeccCCCCCCCHHH
Q 042753 348 ILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL---------GVGIRVGEGTRNIPESDE 414 (473)
Q Consensus 348 lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~---------G~G~~l~~~~~~~~~~~~ 414 (473)
++..+++ +|. -|...+++||+++|+|+|+... ......+. .- +.|..++ .-+.++
T Consensus 362 ~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~~~G~l~~-----~~d~~~ 429 (485)
T 1rzu_A 362 MQAGCDA--IIIPSRFEPCGLTQLYALRYGCIPVVART----GGLADTVI-DANHAALASKAATGVQFS-----PVTLDG 429 (485)
T ss_dssp HHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTCCCBEEES-----SCSHHH
T ss_pred HHhcCCE--EEECcccCCCCHHHHHHHHCCCCEEEeCC----CChhheec-ccccccccccCCcceEeC-----CCCHHH
Confidence 7888997 663 3445689999999999999754 23333333 31 3677776 347899
Q ss_pred HHHHHHHHh---CCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCC
Q 042753 415 LARLLAQSV---DGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKN 469 (473)
Q Consensus 415 l~~~i~~~l---~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~ 469 (473)
+.++|.+++ +|+ ..+++. ++..+ +..-+.+..++++++...+..+.++
T Consensus 430 la~~i~~ll~~~~~~-~~~~~~---~~~~~---~~~fs~~~~~~~~~~~y~~~~~~~~ 480 (485)
T 1rzu_A 430 LKQAIRRTVRYYHDP-KLWTQM---QKLGM---KSDVSWEKSAGLYAALYSQLISKGH 480 (485)
T ss_dssp HHHHHHHHHHHHTCH-HHHHHH---HHHHH---TCCCBHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhCCH-HHHHHH---HHHHH---HHhCChHHHHHHHHHHHHHhhCCCC
Confidence 999999999 675 444332 22222 2456778888888888887755544
No 41
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=98.63 E-value=2.9e-06 Score=89.67 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=69.9
Q ss_pred CCeEeec----CccHHHhhh----ccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEe
Q 042753 335 RGYVIRG----WSQQVAILR----HKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRV 402 (473)
Q Consensus 335 ~nv~v~~----~~pq~~lL~----~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l 402 (473)
++|...+ ++|+.++.. .+++ ||. -|-..++.||+++|+|+|+. |-......+.+. +.|..+
T Consensus 640 ~~V~flG~~~~~v~~~eL~~~~~~aaDv--fV~PS~~EgfglvllEAMA~G~PVIas----d~GG~~EiV~dg-~~Gllv 712 (816)
T 3s28_A 640 GQFRWISSQMDRVRNGELYRYICDTKGA--FVQPALYEAFGLTVVEAMTCGLPTFAT----CKGGPAEIIVHG-KSGFHI 712 (816)
T ss_dssp BBEEEECCCCCHHHHHHHHHHHHHTTCE--EEECCSCBSSCHHHHHHHHTTCCEEEE----SSBTHHHHCCBT-TTBEEE
T ss_pred CcEEEccCccccCCHHHHHHHHHhcCeE--EEECCCccCccHHHHHHHHcCCCEEEe----CCCChHHHHccC-CcEEEe
Confidence 5677776 445555544 3455 663 24456999999999999996 444455555423 578888
Q ss_pred ccCCCCCCCHHHHHHHHHHHh----CCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 042753 403 GEGTRNIPESDELARLLAQSV----DGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINE 463 (473)
Q Consensus 403 ~~~~~~~~~~~~l~~~i~~~l----~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~ 463 (473)
+ .-+.+++.++|.+++ .|+ ..+++. ++..++.+...-+-+..++++++..++
T Consensus 713 ~-----p~D~e~LA~aI~~lL~~Ll~d~-~~~~~m---~~~ar~~a~~~fSwe~~a~~ll~lY~~ 768 (816)
T 3s28_A 713 D-----PYHGDQAADTLADFFTKCKEDP-SHWDEI---SKGGLQRIEEKYTWQIYSQRLLTLTGV 768 (816)
T ss_dssp C-----TTSHHHHHHHHHHHHHHHHHCT-HHHHHH---HHHHHHHHHHSCCHHHHHHHHHHHHHH
T ss_pred C-----CCCHHHHHHHHHHHHHHhccCH-HHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 7 347899999997776 676 433322 222222223445666677777665554
No 42
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=98.58 E-value=1e-05 Score=79.42 Aligned_cols=170 Identities=14% Similarity=0.063 Sum_probs=98.1
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHH-h-CCCcEEEEEeCCCccCCcccCCCCchhhHH---hhc-CCC-------eE
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALE-K-TDVDFVYCVREPDERHASQDCGVLPDGFED---RVA-GRG-------YV 338 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~-~-~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~---~~~-~~n-------v~ 338 (473)
+..+++..|.... ...+.+-+.+..+. + .+.+++++-.... .....+.+.+.+ +.. ..+ +.
T Consensus 183 ~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~-----~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~ 257 (413)
T 3oy2_A 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHH-----ESKFDLHSIALRELVASGVDNVFTHLNKIMI 257 (413)
T ss_dssp TSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCT-----TCSCCHHHHHHHHHHHHTCSCHHHHHTTEEE
T ss_pred CceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcc-----cchhhHHHHHHHHHHHcCcccccccccceee
Confidence 5678888888643 23333333333332 2 3566665544431 000111122222 122 222 66
Q ss_pred eecCccHHH---hhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcc-------------
Q 042753 339 IRGWSQQVA---ILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGV------------- 398 (473)
Q Consensus 339 v~~~~pq~~---lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~------------- 398 (473)
+.+|+|+.+ ++..+++ +|. -|...++.||+++|+|+|+... ......+. . |.
T Consensus 258 ~~g~~~~~~~~~~~~~adv--~v~pS~~E~~~~~~lEAma~G~PvI~s~~----~g~~e~v~-~-~~~~~i~~~~~~~~~ 329 (413)
T 3oy2_A 258 NRTVLTDERVDMMYNACDV--IVNCSSGEGFGLCSAEGAVLGKPLIISAV----GGADDYFS-G-DCVYKIKPSAWISVD 329 (413)
T ss_dssp ECSCCCHHHHHHHHHHCSE--EEECCSCCSSCHHHHHHHTTTCCEEEECC----HHHHHHSC-T-TTSEEECCCEEEECT
T ss_pred ccCcCCHHHHHHHHHhCCE--EEeCCCcCCCCcHHHHHHHcCCCEEEcCC----CChHHHHc-c-Ccccccccccccccc
Confidence 779998544 6788887 553 3445689999999999998653 33444443 2 33
Q ss_pred ---eE--EeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhc
Q 042753 399 ---GI--RVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELK 465 (473)
Q Consensus 399 ---G~--~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~ 465 (473)
|. .+. .-+.+++.++| ++++|+ ..+++. ++..++.+...-+.+..++++++.+++.-
T Consensus 330 ~~~G~~gl~~-----~~d~~~la~~i-~l~~~~-~~~~~~---~~~a~~~~~~~fs~~~~~~~~~~~~~~~~ 391 (413)
T 3oy2_A 330 DRDGIGGIEG-----IIDVDDLVEAF-TFFKDE-KNRKEY---GKRVQDFVKTKPTWDDISSDIIDFFNSLL 391 (413)
T ss_dssp TTCSSCCEEE-----ECCHHHHHHHH-HHTTSH-HHHHHH---HHHHHHHHTTSCCHHHHHHHHHHHHHHHT
T ss_pred cccCcceeeC-----CCCHHHHHHHH-HHhcCH-HHHHHH---HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44 444 23899999999 999987 544333 23333222445678888888888887764
No 43
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.55 E-value=6.1e-05 Score=77.25 Aligned_cols=117 Identities=15% Similarity=0.058 Sum_probs=76.6
Q ss_pred CCeEeecCccHH---HhhhccCccceee---ccCchhHHHHHhhCCeEecCcccccchhh-HHHHHHHhcceEEeccCCC
Q 042753 335 RGYVIRGWSQQV---AILRHKAVGAFLT---HCGWNSVLEGVSAGVVMLTWPMDADQYTN-AQLLVDQLGVGIRVGEGTR 407 (473)
Q Consensus 335 ~nv~v~~~~pq~---~lL~~~~v~~~It---HgG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~rv~~~~G~G~~l~~~~~ 407 (473)
++|++.+++|+. .++..+++ ||. .|+.+++.||+++|+|+|+.|-..=.-+. +..+. ..|+.-.+. .
T Consensus 434 ~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~-~~g~~e~v~---~ 507 (568)
T 2vsy_A 434 QRLVFMPKLPHPQYLARYRHADL--FLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNH-HLGLDEMNV---A 507 (568)
T ss_dssp GGEEEECCCCHHHHHHHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHH-HHTCGGGBC---S
T ss_pred hHEEeeCCCCHHHHHHHHhcCCE--EeeCCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHH-HCCChhhhc---C
Confidence 678889999854 46788887 651 26778999999999999997643111122 23344 336665554 2
Q ss_pred CCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHHHHhh
Q 042753 408 NIPESDELARLLAQSVDGPRRERLKARELSGAALSAV--VKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~--~~~gs~~~~~~~~~~~~~~~ 464 (473)
+.+++.++|.++++|+ ..+++. ++..++.+ ...-+.+..++++++.+.+.
T Consensus 508 ---~~~~la~~i~~l~~~~-~~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~y~~~ 559 (568)
T 2vsy_A 508 ---DDAAFVAKAVALASDP-AALTAL---HARVDVLRRASGVFHMDGFADDFGALLQAL 559 (568)
T ss_dssp ---SHHHHHHHHHHHHHCH-HHHHHH---HHHHHHHHHHSSTTCHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhcCH-HHHHHH---HHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Confidence 8999999999999987 544433 23333222 24456677777777666554
No 44
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=98.54 E-value=8e-05 Score=74.70 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=98.2
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhc--CCCeE-eecCccH--H
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVA--GRGYV-IRGWSQQ--V 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~-v~~~~pq--~ 346 (473)
+..+++..|.... ...+.+.+.+..+.+.+.+++++=.++ +..-+.+.+... ..++. ..++... .
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~---------~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD---------PVLQEGFLAAAAEYPGQVGVQIGYHEAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEEC---------HHHHHHHHHHHHHSTTTEEEEESCCHHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCc---------hHHHHHHHHHHHhCCCcEEEeCCCCHHHHH
Confidence 4456677787743 233444444444444456655443331 001122322211 25675 6777433 3
Q ss_pred HhhhccCccceee----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHh---------cceEEeccCCCCCCCHH
Q 042753 347 AILRHKAVGAFLT----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQL---------GVGIRVGEGTRNIPESD 413 (473)
Q Consensus 347 ~lL~~~~v~~~It----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~---------G~G~~l~~~~~~~~~~~ 413 (473)
.++..+++ +|. -|...+++||+++|+|+|+... ......+. .- +.|..++ .-+.+
T Consensus 362 ~~~~~adv--~v~pS~~E~~g~~~lEAma~G~PvI~s~~----gg~~e~v~-~~~~~~~~~~~~~G~l~~-----~~d~~ 429 (485)
T 2qzs_A 362 RIMGGADV--ILVPSRFEPCGLTQLYGLKYGTLPLVRRT----GGLADTVS-DCSLENLADGVASGFVFE-----DSNAW 429 (485)
T ss_dssp HHHHHCSE--EEECCSCCSSCSHHHHHHHHTCEEEEESS----HHHHHHCC-BCCHHHHHTTCCCBEEEC-----SSSHH
T ss_pred HHHHhCCE--EEECCccCCCcHHHHHHHHCCCCEEECCC----CCccceec-cCccccccccccceEEEC-----CCCHH
Confidence 57888997 653 2445688999999999999754 23334343 31 3677776 34789
Q ss_pred HHHHHHHHHh---CCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCC
Q 042753 414 ELARLLAQSV---DGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKN 469 (473)
Q Consensus 414 ~l~~~i~~~l---~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~ 469 (473)
++.++|.+++ +|+ ..+++.. +..+ +..-|-+..++++++.+.+.....+
T Consensus 430 ~la~~i~~ll~~~~~~-~~~~~~~---~~~~---~~~fs~~~~~~~~~~ly~~~~~~~~ 481 (485)
T 2qzs_A 430 SLLRAIRRAFVLWSRP-SLWRFVQ---RQAM---AMDFSWQVAAKSYRELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHHHHHHTSH-HHHHHHH---HHHH---HCCCCHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHH---HHHH---hhcCCHHHHHHHHHHHHHHhhhhhc
Confidence 9999999999 675 4443322 2222 2456778888888888887755443
No 45
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=98.35 E-value=0.00016 Score=69.91 Aligned_cols=95 Identities=17% Similarity=0.223 Sum_probs=67.5
Q ss_pred CeEeecCcc-HHHhhhccCccceee-----ccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCC
Q 042753 336 GYVIRGWSQ-QVAILRHKAVGAFLT-----HCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNI 409 (473)
Q Consensus 336 nv~v~~~~p-q~~lL~~~~v~~~It-----HgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 409 (473)
++.+.++.. -..+++.+++ ++. -+|..+++||+++|+|+|+-|...+.......+.+. |.++...
T Consensus 261 ~v~~~~~~~dl~~~y~~aDv--~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e~~~~~~~~-G~l~~~~------ 331 (374)
T 2xci_A 261 DVILVDRFGILKELYPVGKI--AIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVNDLKEFLEKE-GAGFEVK------ 331 (374)
T ss_dssp SEEECCSSSCHHHHGGGEEE--EEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHHHHHHHHHT-TCEEECC------
T ss_pred cEEEECCHHHHHHHHHhCCE--EEECCcccCCCCcCHHHHHHhCCCEEECCCccChHHHHHHHHHC-CCEEEeC------
Confidence 455555443 3558888887 443 234578999999999999877777777777665535 7776654
Q ss_pred CCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHH
Q 042753 410 PESDELARLLAQSVDGP--RRERLKARELSGAA 440 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~~--~~~~~~a~~~~~~~ 440 (473)
+.++|.++|.++++|+ ..|.+++++..+.-
T Consensus 332 -d~~~La~ai~~ll~d~~r~~mg~~ar~~~~~~ 363 (374)
T 2xci_A 332 -NETELVTKLTELLSVKKEIKVEEKSREIKGCY 363 (374)
T ss_dssp -SHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 5789999999999763 36777777766554
No 46
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=98.21 E-value=7e-06 Score=70.44 Aligned_cols=141 Identities=10% Similarity=0.076 Sum_probs=88.5
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhC-CCcEEEEEeCCCccCCcccCCCCchhhH--HhhcCCCeEeecCccH---HH
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKT-DVDFVYCVREPDERHASQDCGVLPDGFE--DRVAGRGYVIRGWSQQ---VA 347 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~lp~~~~--~~~~~~nv~v~~~~pq---~~ 347 (473)
..+++..|+... ...+..+++++++. +.+++++-.... .+.+-+... +.-..+|+.+.+|+++ ..
T Consensus 23 ~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~l~i~G~~~~-------~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~ 93 (177)
T 2f9f_A 23 GDFWLSVNRIYP--EKRIELQLEVFKKLQDEKLYIVGWFSK-------GDHAERYARKIMKIAPDNVKFLGSVSEEELID 93 (177)
T ss_dssp CSCEEEECCSSG--GGTHHHHHHHHHHCTTSCEEEEBCCCT-------TSTHHHHHHHHHHHSCTTEEEEESCCHHHHHH
T ss_pred CCEEEEEecccc--ccCHHHHHHHHHhCCCcEEEEEecCcc-------HHHHHHHHHhhhcccCCcEEEeCCCCHHHHHH
Confidence 345567788753 33455677777776 456555433321 011222111 1112468999999997 56
Q ss_pred hhhccCccceee---c-cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 348 ILRHKAVGAFLT---H-CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 348 lL~~~~v~~~It---H-gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
++..+++ +|. + |...++.||+++|+|+|+... ..+...+.+. +.|..+. -+.+++.++|.+++
T Consensus 94 ~~~~adi--~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~e~i~~~-~~g~~~~------~d~~~l~~~i~~l~ 160 (177)
T 2f9f_A 94 LYSRCKG--LLCTAKDEDFGLTPIEAMASGKPVIAVNE----GGFKETVINE-KTGYLVN------ADVNEIIDAMKKVS 160 (177)
T ss_dssp HHHHCSE--EEECCSSCCSCHHHHHHHHTTCCEEEESS----HHHHHHCCBT-TTEEEEC------SCHHHHHHHHHHHH
T ss_pred HHHhCCE--EEeCCCcCCCChHHHHHHHcCCcEEEeCC----CCHHHHhcCC-CccEEeC------CCHHHHHHHHHHHH
Confidence 8888997 554 2 334599999999999999753 4445555422 5676653 46899999999999
Q ss_pred CCcHHH-HHHHHHHH
Q 042753 424 DGPRRE-RLKARELS 437 (473)
Q Consensus 424 ~~~~~~-~~~a~~~~ 437 (473)
+|+ .. ++++++.+
T Consensus 161 ~~~-~~~~~~~~~~a 174 (177)
T 2f9f_A 161 KNP-DKFKKDCFRRA 174 (177)
T ss_dssp HCT-TTTHHHHHHHH
T ss_pred hCH-HHHHHHHHHHH
Confidence 887 43 55555443
No 47
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=97.99 E-value=0.001 Score=65.02 Aligned_cols=75 Identities=11% Similarity=0.085 Sum_probs=56.8
Q ss_pred CCCeEeecCccHHH---hhhccCccceee---c-cCchhHHHHH-------hhCCeEecCcccccchhhHHHHHHHhcce
Q 042753 334 GRGYVIRGWSQQVA---ILRHKAVGAFLT---H-CGWNSVLEGV-------SAGVVMLTWPMDADQYTNAQLLVDQLGVG 399 (473)
Q Consensus 334 ~~nv~v~~~~pq~~---lL~~~~v~~~It---H-gG~~s~~eal-------~~GvP~l~~P~~~DQ~~na~rv~~~~G~G 399 (473)
.++|.+.+++|+.+ ++..+++ +|. . |-.+++.||+ ++|+|+|+... +.+. ..|
T Consensus 264 ~~~V~f~G~~~~~~l~~~~~~adv--~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~----------v~~~-~~G 330 (406)
T 2hy7_A 264 GDNVIVYGEMKHAQTIGYIKHARF--GIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA----------VVGP-YKS 330 (406)
T ss_dssp CTTEEEECCCCHHHHHHHHHTCSE--EECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG----------GTCS-CSS
T ss_pred CCCEEEcCCCCHHHHHHHHHhcCE--EEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh----------cccC-cce
Confidence 36889999998654 6788887 553 2 3346789999 99999999755 4422 457
Q ss_pred EE-eccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 400 IR-VGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 400 ~~-l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
.. +. .-+.+++.++|.++++|+
T Consensus 331 ~l~v~-----~~d~~~la~ai~~ll~~~ 353 (406)
T 2hy7_A 331 RFGYT-----PGNADSVIAAITQALEAP 353 (406)
T ss_dssp EEEEC-----TTCHHHHHHHHHHHHHCC
T ss_pred EEEeC-----CCCHHHHHHHHHHHHhCc
Confidence 77 66 347899999999999987
No 48
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.73 E-value=0.00068 Score=64.79 Aligned_cols=105 Identities=13% Similarity=0.062 Sum_probs=73.7
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCee-EEEcCCCCCCCCCChhhHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQ-SLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~-f~~l~~~~~~~~~~~~~~~ 80 (473)
.++|||++-..+.|++.-+.++.+.|+++ +.+|++++.+.+.+.++.. +.++ ++.++.. ....
T Consensus 7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~------p~vd~vi~~~~~--------~~~~ 72 (349)
T 3tov_A 7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYN------PNIDELIVVDKK--------GRHN 72 (349)
T ss_dssp TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSC------TTCSEEEEECCS--------SHHH
T ss_pred CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC------CCccEEEEeCcc--------cccc
Confidence 47899999999999999999999999997 9999999999887776654 4554 5544421 1001
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCC-cEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPP-VAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~p-D~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
.+ ..+ -.+.+.|+.. ++ |++|.=....-...++...|+|...
T Consensus 73 ~~-~~~-----~~l~~~Lr~~--~y~D~vidl~~~~rs~~l~~~~~a~~ri 115 (349)
T 3tov_A 73 SI-SGL-----NEVAREINAK--GKTDIVINLHPNERTSYLAWKIHAPITT 115 (349)
T ss_dssp HH-HHH-----HHHHHHHHHH--CCCCEEEECCCSHHHHHHHHHHCCSEEE
T ss_pred cH-HHH-----HHHHHHHhhC--CCCeEEEECCCChHHHHHHHHhCCCeEE
Confidence 11 111 1233445666 89 9999655545566778888999654
No 49
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.63 E-value=0.0025 Score=60.69 Aligned_cols=103 Identities=15% Similarity=0.069 Sum_probs=67.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCe-eEEEcCCCCCCCCCChhhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSL-QSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~-~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
+||+++...+.|++.-..++.+.|+++ +.+|++++.+.+.+.++.. +.+ +++.++... .. ..+
T Consensus 1 mkILii~~~~~GD~i~~~p~l~~Lk~~~P~~~i~~l~~~~~~~l~~~~------p~i~~v~~~~~~~---~~--~~~--- 66 (348)
T 1psw_A 1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRM------PEVNEAIPMPLGH---GA--LEI--- 66 (348)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTC------TTEEEEEEC------------CH---
T ss_pred CeEEEEeccccCHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcC------CccCEEEEecCCc---cc--cch---
Confidence 589999998889999999999999997 9999999998776655543 345 344443210 00 000
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVV 130 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~ 130 (473)
.....+.+.+++. +||++|.=........++...|+|...
T Consensus 67 ------~~~~~l~~~l~~~--~~D~vid~~~~~~sa~~~~~~~~~~~i 106 (348)
T 1psw_A 67 ------GERRKLGHSLREK--RYDRAYVLPNSFKSALVPLFAGIPHRT 106 (348)
T ss_dssp ------HHHHHHHHHTTTT--TCSEEEECSCCSGGGHHHHHTTCSEEE
T ss_pred ------HHHHHHHHHHHhc--CCCEEEECCCChHHHHHHHHhCCCEEe
Confidence 1112344556666 899999322233456778888999743
No 50
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.54 E-value=0.0017 Score=68.20 Aligned_cols=177 Identities=13% Similarity=0.120 Sum_probs=104.7
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHH-hhcCCCeEeecCccHHHhh
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFED-RVAGRGYVIRGWSQQVAIL 349 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~-~~~~~nv~v~~~~pq~~lL 349 (473)
++..+||.||.+.....++.+..-.+-|++.+.-++|....+... ...+-..+.+ .+..+.+++.+.+|..+-|
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~-----~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l 594 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG-----EPNIQQYAQNMGLPQNRIIFSPVAPKEEHV 594 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGG-----HHHHHHHHHHTTCCGGGEEEEECCCHHHHH
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHH-----HHHHHHHHHhcCCCcCeEEECCCCCHHHHH
Confidence 456799999999999999999999999999999999998875310 0111111111 1123457778888866544
Q ss_pred ---hccCccceee---ccCchhHHHHHhhCCeEecCcccccchhh-HHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 350 ---RHKAVGAFLT---HCGWNSVLEGVSAGVVMLTWPMDADQYTN-AQLLVDQLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 350 ---~~~~v~~~It---HgG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
..+++ ++- .+|.+|+.|||+.|||+|+++-..=--.. +..+. .+|+.-.+- -+.++-.+..-++
T Consensus 595 ~~~~~~Di--~LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~-~~gl~e~ia------~~~~~Y~~~a~~l 665 (723)
T 4gyw_A 595 RRGQLADV--CLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLT-CLGCLELIA------KNRQEYEDIAVKL 665 (723)
T ss_dssp HHGGGCSE--EECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHH-HHTCGGGBC------SSHHHHHHHHHHH
T ss_pred HHhCCCeE--EeCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHH-HcCCccccc------CCHHHHHHHHHHH
Confidence 44665 654 78999999999999999999842211122 22333 446654443 2344444333355
Q ss_pred hCCcHHHHHHH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 423 VDGPRRERLKA-RELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 423 l~~~~~~~~~a-~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
-+|. ...+.. +++++.... .+--.....+..+++.+.++
T Consensus 666 a~d~-~~l~~lr~~l~~~~~~--s~l~d~~~~~~~le~a~~~~ 705 (723)
T 4gyw_A 666 GTDL-EYLKKVRGKVWKQRIS--SPLFNTKQYTMELERLYLQM 705 (723)
T ss_dssp HHCH-HHHHHHHHHHHHHHHH--SSTTCHHHHHHHHHHHHHHH
T ss_pred hcCH-HHHHHHHHHHHHHHHh--CcCcCHHHHHHHHHHHHHHH
Confidence 5565 333222 233333321 12233445555555555444
No 51
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=97.54 E-value=0.00086 Score=56.25 Aligned_cols=128 Identities=13% Similarity=0.122 Sum_probs=75.8
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCC--CcEEE-EEeCCCccCCcccCCCCchhhHHhhc--CCCeEeecCccHH-
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTD--VDFVY-CVREPDERHASQDCGVLPDGFEDRVA--GRGYVIRGWSQQV- 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~-~~~~~~~~~~~~~~~~lp~~~~~~~~--~~nv~v~~~~pq~- 346 (473)
++++++..|+... ......++++++... ..+-+ .++... ..+.+.+... .-++.+ +|+|+.
T Consensus 1 ~~~~i~~~G~~~~--~Kg~~~li~a~~~l~~~~~~~l~i~G~g~----------~~~~~~~~~~~~~~~v~~-g~~~~~~ 67 (166)
T 3qhp_A 1 TPFKIAMVGRYSN--EKNQSVLIKAVALSKYKQDIVLLLKGKGP----------DEKKIKLLAQKLGVKAEF-GFVNSNE 67 (166)
T ss_dssp CCEEEEEESCCST--TTTHHHHHHHHHTCTTGGGEEEEEECCST----------THHHHHHHHHHHTCEEEC-CCCCHHH
T ss_pred CceEEEEEeccch--hcCHHHHHHHHHHhccCCCeEEEEEeCCc----------cHHHHHHHHHHcCCeEEE-eecCHHH
Confidence 3578888898853 233455667766542 23333 334321 1123332221 226777 999864
Q ss_pred --HhhhccCccceee----ccCchhHHHHHhhCC-eEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHH
Q 042753 347 --AILRHKAVGAFLT----HCGWNSVLEGVSAGV-VMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 347 --~lL~~~~v~~~It----HgG~~s~~eal~~Gv-P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
.++..+++ +|. -|...++.||+++|+ |+|+....+. ....+.+. +. .+. .-+.+++.++|
T Consensus 68 ~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~---~~~~~~~~-~~--~~~-----~~~~~~l~~~i 134 (166)
T 3qhp_A 68 LLEILKTCTL--YVHAANVESEAIACLEAISVGIVPVIANSPLSA---TRQFALDE-RS--LFE-----PNNAKDLSAKI 134 (166)
T ss_dssp HHHHHTTCSE--EEECCCSCCCCHHHHHHHHTTCCEEEECCTTCG---GGGGCSSG-GG--EEC-----TTCHHHHHHHH
T ss_pred HHHHHHhCCE--EEECCcccCccHHHHHHHhcCCCcEEeeCCCCc---hhhhccCC-ce--EEc-----CCCHHHHHHHH
Confidence 46788887 554 344569999999996 9999432211 11112211 22 333 34799999999
Q ss_pred HHHhCCc
Q 042753 420 AQSVDGP 426 (473)
Q Consensus 420 ~~~l~~~ 426 (473)
.++++|+
T Consensus 135 ~~l~~~~ 141 (166)
T 3qhp_A 135 DWWLENK 141 (166)
T ss_dssp HHHHHCH
T ss_pred HHHHhCH
Confidence 9999987
No 52
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=97.52 E-value=0.0023 Score=55.45 Aligned_cols=78 Identities=12% Similarity=0.129 Sum_probs=58.4
Q ss_pred CeEe-ecCccHH---HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCC
Q 042753 336 GYVI-RGWSQQV---AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTR 407 (473)
Q Consensus 336 nv~v-~~~~pq~---~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 407 (473)
++.+ .+++++. .++..+++ +|.- |...++.||+++|+|+|+.... .....+ .. +.|..++
T Consensus 96 ~v~~~~g~~~~~~~~~~~~~ad~--~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~----~~~e~~-~~-~~g~~~~---- 163 (200)
T 2bfw_A 96 NVKVITEMLSREFVRELYGSVDF--VIIPSYFEPFGLVALEAMCLGAIPIASAVG----GLRDII-TN-ETGILVK---- 163 (200)
T ss_dssp TEEEECSCCCHHHHHHHHTTCSE--EEECCSCCSSCHHHHHHHHTTCEEEEESCH----HHHHHC-CT-TTCEEEC----
T ss_pred CEEEEeccCCHHHHHHHHHHCCE--EEECCCCCCccHHHHHHHHCCCCEEEeCCC----ChHHHc-CC-CceEEec----
Confidence 7888 8999853 57888887 5532 3356899999999999987543 344444 24 6787776
Q ss_pred CCCCHHHHHHHHHHHhC-Cc
Q 042753 408 NIPESDELARLLAQSVD-GP 426 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~-~~ 426 (473)
.-+.+++.++|.++++ |+
T Consensus 164 -~~~~~~l~~~i~~l~~~~~ 182 (200)
T 2bfw_A 164 -AGDPGELANAILKALELSR 182 (200)
T ss_dssp -TTCHHHHHHHHHHHHHCCH
T ss_pred -CCCHHHHHHHHHHHHhcCH
Confidence 3478999999999999 87
No 53
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=97.24 E-value=0.0033 Score=63.61 Aligned_cols=145 Identities=15% Similarity=0.140 Sum_probs=89.8
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEE--eCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhh-
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCV--REPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAIL- 349 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~--~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL- 349 (473)
..++|.||++.....++.+....+.+++.+..++|.. +... +. ...+-..+.+.--.+.+++.+.+|..+.|
T Consensus 440 G~v~Fg~fn~~~Ki~p~~l~~WarIL~~vP~s~L~l~~~g~~~----g~-~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la 514 (631)
T 3q3e_A 440 EVVNIGIASTTMKLNPYFLEALKAIRDRAKVKVHFHFALGQSN----GI-THPYVERFIKSYLGDSATAHPHSPYHQYLR 514 (631)
T ss_dssp SEEEEEEEECSTTCCHHHHHHHHHHHHHCSSEEEEEEEESSCC----GG-GHHHHHHHHHHHHGGGEEEECCCCHHHHHH
T ss_pred CeEEEEECCccccCCHHHHHHHHHHHHhCCCcEEEEEecCCCc----hh-hHHHHHHHHHcCCCccEEEcCCCCHHHHHH
Confidence 4689999999888889999888888888887777753 3221 00 00011111111112456777888876644
Q ss_pred --hccCccceee---ccCchhHHHHHhhCCeEecCcccccchhhH-HHHHHHhcceEE-eccCCCCCCCHHHHHHHHHHH
Q 042753 350 --RHKAVGAFLT---HCGWNSVLEGVSAGVVMLTWPMDADQYTNA-QLLVDQLGVGIR-VGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 350 --~~~~v~~~It---HgG~~s~~eal~~GvP~l~~P~~~DQ~~na-~rv~~~~G~G~~-l~~~~~~~~~~~~l~~~i~~~ 422 (473)
..+++ |+. .+|..|+.||++.|||+|+.+-..=.-..+ ..+. ..|+.-. +. -+.++..+..-++
T Consensus 515 ~y~~aDI--fLDpfpy~GgtTtlEALwmGVPVVTl~G~~~asRvgaSlL~-~~GLpE~LIA------~d~eeYv~~Av~L 585 (631)
T 3q3e_A 515 ILHNCDM--MVNPFPFGNTNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFK-RLGLPEWLIA------NTVDEYVERAVRL 585 (631)
T ss_dssp HHHTCSE--EECCSSSCCSHHHHHHHHTTCCEEEECCSSHHHHHHHHHHH-HTTCCGGGEE------SSHHHHHHHHHHH
T ss_pred HHhcCcE--EEeCCcccCChHHHHHHHcCCCEEeccCCcHHHHhHHHHHH-hcCCCcceec------CCHHHHHHHHHHH
Confidence 67777 442 378899999999999999987431111111 1222 3355432 32 3577777777788
Q ss_pred hCCcHHHHHH
Q 042753 423 VDGPRRERLK 432 (473)
Q Consensus 423 l~~~~~~~~~ 432 (473)
.+|+ ..+++
T Consensus 586 a~D~-~~l~~ 594 (631)
T 3q3e_A 586 AENH-QERLE 594 (631)
T ss_dssp HHCH-HHHHH
T ss_pred hCCH-HHHHH
Confidence 8887 54433
No 54
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.12 E-value=0.0012 Score=62.58 Aligned_cols=107 Identities=13% Similarity=0.115 Sum_probs=75.6
Q ss_pred CeEeecCccHHHh---hhccCccceeeccCc---------hhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEec
Q 042753 336 GYVIRGWSQQVAI---LRHKAVGAFLTHCGW---------NSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 336 nv~v~~~~pq~~l---L~~~~v~~~ItHgG~---------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
||...+|+|+.++ |+.++.+++..-+.+ +-+.|++++|+|+|+.+ ...++..+++. |+|+..+
T Consensus 215 nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~----~~~~~~~v~~~-~~G~~~~ 289 (339)
T 3rhz_A 215 NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE----GIANQELIENN-GLGWIVK 289 (339)
T ss_dssp TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET----TCTTTHHHHHH-TCEEEES
T ss_pred CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc----ChhHHHHHHhC-CeEEEeC
Confidence 8999999999775 445566433323322 34789999999999754 56778888866 9999887
Q ss_pred cCCCCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042753 404 EGTRNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 404 ~~~~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~ 458 (473)
+.+++.++|..+..+. +.|++++++.++.++ .|.-..+++.+.+
T Consensus 290 -------~~~e~~~~i~~l~~~~~~~m~~na~~~a~~~~----~~~f~k~~l~~~~ 334 (339)
T 3rhz_A 290 -------DVEEAIMKVKNVNEDEYIELVKNVRSFNPILR----KGFFTRRLLTESV 334 (339)
T ss_dssp -------SHHHHHHHHHHCCHHHHHHHHHHHHHHTHHHH----TTHHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHHH
Confidence 3688888998875443 688889999888884 4444444444433
No 55
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=95.97 E-value=0.23 Score=46.47 Aligned_cols=136 Identities=7% Similarity=0.004 Sum_probs=77.7
Q ss_pred CCcEEEEEeCCcc---cCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecC--c-cH
Q 042753 272 DESVVYVCFGSRY---VLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGW--S-QQ 345 (473)
Q Consensus 272 ~~~~V~vs~Gs~~---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~--~-pq 345 (473)
+++.|.+.-|+.. .++.+.+.++++.|.+.+.++++..+.+. + ..+-+.+.+. .+++.+..- + .-
T Consensus 177 ~~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~----e---~~~~~~i~~~--~~~~~l~g~~sl~el 247 (326)
T 2gt1_A 177 AGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPH----E---EERAKRLAEG--FAYVEVLPKMSLEGV 247 (326)
T ss_dssp TTSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHH----H---HHHHHHHHTT--CTTEEECCCCCHHHH
T ss_pred CCCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHH----H---HHHHHHHHhh--CCcccccCCCCHHHH
Confidence 5678888888763 37788888899988777777766544321 0 0001111111 123322222 2 23
Q ss_pred HHhhhccCccceeeccCchhHHHHHhhCCeEecC--cccccchhhHHHHHHHhcce-EEec--cCCCCCCCHHHHHHHHH
Q 042753 346 VAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTW--PMDADQYTNAQLLVDQLGVG-IRVG--EGTRNIPESDELARLLA 420 (473)
Q Consensus 346 ~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~--P~~~DQ~~na~rv~~~~G~G-~~l~--~~~~~~~~~~~l~~~i~ 420 (473)
.++++++++ +|+.-.. .++=|.+.|+|+|++ |.... +-. -+|-. ..+. ..-.+.++.+++.++++
T Consensus 248 ~ali~~a~l--~I~~DSG-~~HlAaa~g~P~v~lfg~t~p~------~~~-P~~~~~~~~~~~~~cm~~I~~~~V~~~i~ 317 (326)
T 2gt1_A 248 ARVLAGAKF--VVSVDTG-LSHLTAALDRPNITVYGPTDPG------LIG-GYGKNQMVCRAPGNELSQLTANAVKQFIE 317 (326)
T ss_dssp HHHHHTCSE--EEEESSH-HHHHHHHTTCCEEEEESSSCHH------HHC-CCSSSEEEEECGGGCGGGCCHHHHHHHHH
T ss_pred HHHHHhCCE--EEecCCc-HHHHHHHcCCCEEEEECCCChh------hcC-CCCCCceEecCCcccccCCCHHHHHHHHH
Confidence 568899997 9998432 233366699999987 32111 100 01211 1111 01135789999999999
Q ss_pred HHhCCc
Q 042753 421 QSVDGP 426 (473)
Q Consensus 421 ~~l~~~ 426 (473)
++|++.
T Consensus 318 ~~l~~~ 323 (326)
T 2gt1_A 318 ENAEKA 323 (326)
T ss_dssp HTTTTC
T ss_pred HHHHHh
Confidence 999874
No 56
>2wqk_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus}
Probab=94.89 E-value=0.13 Score=45.96 Aligned_cols=112 Identities=17% Similarity=0.095 Sum_probs=63.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC---CCCCCChhhHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK---WPAGSPATRLLK 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~---~~~~~~~~~~~~ 81 (473)
|+|||+.-==|. +--=+..|+++|.+.| +|+++.+...+.-....+. ....+++....... .++-|.+
T Consensus 1 Mp~ILlTNDDGi-~apGi~~L~~~l~~~g-~V~VvAP~~~~Sg~g~siT--~~~pl~~~~~~~~~~~~v~GTPaD----- 71 (251)
T 2wqk_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLT--FTEPLKMRKIDTDFYTVIDGTPAD----- 71 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCC--CSSCEEEEEEETTEEEETTCCHHH-----
T ss_pred CCEEEEEcCCCC-CcHHHHHHHHHHHhCC-CEEEEeeCCCCcccccCcC--CCCCceeEEeeccceeecCCChHH-----
Confidence 788888763332 2233778899999888 5888888766443322211 11234444433210 1222211
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEe----------CCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILS----------DFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~----------D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
-..-.+..++.+. +||+||+ |.+.+ .++.-|..+|||.|.++..
T Consensus 72 -------CV~lal~~~l~~~--~PDLVvSGIN~G~N~g~dv~ySGTVgAA~Ea~~~GipaIA~S~~ 128 (251)
T 2wqk_A 72 -------CVHLGYRVILEEK--KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp -------HHHHHHHTTTTTC--CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -------HHhhhhhhhcCCC--CCCEEEeCccCCCccccceecchHHHHHHHHHhcCCCeEEEEcc
Confidence 1122345566666 8999997 44444 3445567789999998743
No 57
>2phj_A 5'-nucleotidase SURE; SURE protein, putative acid phosphatase, structural genomics, 3-D structure, mixed alpha/beta protein, NPPSFA; 1.50A {Aquifex aeolicus VF5} PDB: 2wqk_A
Probab=93.76 E-value=0.23 Score=44.18 Aligned_cols=112 Identities=17% Similarity=0.098 Sum_probs=62.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC---CCCCCCChhhHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP---KWPAGSPATRLLK 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~---~~~~~~~~~~~~~ 81 (473)
|||||+.-==+. |---+.+|+++|.+.| +|+++.+...+.-....+. ....+++...... ..++-|.+
T Consensus 1 ~M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~sit--~~~pl~~~~~~~~~~~~v~GTPaD----- 71 (251)
T 2phj_A 1 MPTFLLVNDDGY-FSPGINALREALKSLG-RVVVVAPDRNLSGVGHSLT--FTEPLKMRKIDTDFYTVIDGTPAD----- 71 (251)
T ss_dssp -CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTSCCSCC--CSSCEEEEEEETTEEEETTCCHHH-----
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhcC-CEEEEecCCCccCCcccee--cCCCeEEEEecCCCeEEECCCHHH-----
Confidence 578888774333 3344788899999988 9999999866544332211 1122444433311 00111100
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEe----------CCCcch---HHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILS----------DFFLGW---TQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~----------D~~~~~---~~~~A~~~giP~v~~~~~ 134 (473)
...-.+..++.+. +||+||+ |.+++. ++.-|..+|||.|.++..
T Consensus 72 -------CV~lal~~l~~~~--~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (251)
T 2phj_A 72 -------CVHLGYRVILEEK--KPDLVLSGINEGPNLGEDITYSGTVSGAMEGRILGIPSIAFSAF 128 (251)
T ss_dssp -------HHHHHHHTTTTTC--CCSEEEEEEESSCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEEE
T ss_pred -------HHHHHHHHhcCCC--CCCEEEECCcCCCcCCCCCccchHHHHHHHHHHcCCCeEEEEcC
Confidence 1122344445435 8999996 333343 345567789999998654
No 58
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=93.66 E-value=0.2 Score=48.68 Aligned_cols=84 Identities=13% Similarity=0.002 Sum_probs=56.2
Q ss_pred CCeEeecCccHHH---hhhccCccceeecc---C-chhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCCC
Q 042753 335 RGYVIRGWSQQVA---ILRHKAVGAFLTHC---G-WNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTR 407 (473)
Q Consensus 335 ~nv~v~~~~pq~~---lL~~~~v~~~ItHg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 407 (473)
.++...+++|+.+ ++..+++ ||.-+ | ..+++||+++|+|+|+ -..+ ....+. .-..|+.++
T Consensus 295 ~~v~f~G~~~~~~l~~~~~~adv--~v~pS~~E~~g~~~lEAmA~G~PVV~-~~~g----~~e~v~-~~~~G~lv~---- 362 (413)
T 2x0d_A 295 IHLNSLGKLTLEDYADLLKRSSI--GISLMISPHPSYPPLEMAHFGLRVIT-NKYE----NKDLSN-WHSNIVSLE---- 362 (413)
T ss_dssp EEEEEEESCCHHHHHHHHHHCCE--EECCCSSSSCCSHHHHHHHTTCEEEE-ECBT----TBCGGG-TBTTEEEES----
T ss_pred CcEEEcCCCCHHHHHHHHHhCCE--EEEecCCCCCCcHHHHHHhCCCcEEE-eCCC----cchhhh-cCCCEEEeC----
Confidence 4788889998754 6788887 66422 3 3468999999999998 2222 122333 313687776
Q ss_pred CCCCHHHHHHHHHHHhCCcHHHHHH
Q 042753 408 NIPESDELARLLAQSVDGPRRERLK 432 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~~~~~~~ 432 (473)
.-+.++|.++|.++++|+ ..+++
T Consensus 363 -~~d~~~la~ai~~ll~~~-~~~~~ 385 (413)
T 2x0d_A 363 -QLNPENIAETLVELCMSF-NNRDV 385 (413)
T ss_dssp -SCSHHHHHHHHHHHHHHT-C----
T ss_pred -CCCHHHHHHHHHHHHcCH-HHHHH
Confidence 357899999999999886 55544
No 59
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=92.80 E-value=1.9 Score=43.30 Aligned_cols=169 Identities=10% Similarity=0.006 Sum_probs=91.1
Q ss_pred CcEEEEEeCCccc-CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHH--hhcCCCeEeecCccHH---
Q 042753 273 ESVVYVCFGSRYV-LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFED--RVAGRGYVIRGWSQQV--- 346 (473)
Q Consensus 273 ~~~V~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~nv~v~~~~pq~--- 346 (473)
+..+++..|.... ...+.+.+.+..+.+.+.++++.-.++. .....+.. .....++.+..+.+..
T Consensus 326 ~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~---------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 396 (536)
T 3vue_A 326 KIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKK---------KFEKLLKSMEEKYPGKVRAVVKFNAPLAH 396 (536)
T ss_dssp TSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCH---------HHHHHHHHHHHHSTTTEEEECSCCHHHHH
T ss_pred CCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCc---------hHHHHHHHHHhhcCCceEEEEeccHHHHH
Confidence 4456677788753 2344444444444455666665544321 11111111 1123566666666653
Q ss_pred HhhhccCccceeec----cCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccCC-----CCCCCHHHHHH
Q 042753 347 AILRHKAVGAFLTH----CGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT-----RNIPESDELAR 417 (473)
Q Consensus 347 ~lL~~~~v~~~ItH----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~-----~~~~~~~~l~~ 417 (473)
.+++.+++ ||.- |=..+++||+++|+|+|+... ......|.+. .-|....... ....+.+.|.+
T Consensus 397 ~~~~~aD~--~v~PS~~E~fgl~~lEAma~G~PvI~s~~----gG~~e~V~dg-~~G~~~~~~~~~g~l~~~~d~~~la~ 469 (536)
T 3vue_A 397 LIMAGADV--LAVPSRFEPCGLIQLQGMRYGTPCACAST----GGLVDTVIEG-KTGFHMGRLSVDCKVVEPSDVKKVAA 469 (536)
T ss_dssp HHHHHCSE--EEECCSCCSSCSHHHHHHHTTCCEEECSC----THHHHHCCBT-TTEEECCCCCSCTTCCCHHHHHHHHH
T ss_pred HHHHhhhe--eecccccCCCCHHHHHHHHcCCCEEEcCC----CCchheeeCC-CCccccccCCCceeEECCCCHHHHHH
Confidence 36788887 6643 223589999999999998654 3344444422 2454433100 11235678999
Q ss_pred HHHHHhC--CcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 418 LLAQSVD--GPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 418 ~i~~~l~--~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
+|++++. +.+.+++. .+.+++.--|=++.+++.++...++
T Consensus 470 ai~ral~~~~~~~~~~~-------~~~am~~~fSW~~~A~~y~~ly~~L 511 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEM-------VRNCMNQDLSWKGPAKNWENVLLGL 511 (536)
T ss_dssp HHHHHHHHTTSHHHHHH-------HHHHHHSCCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCcHHHHHH-------HHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 9988774 22233322 2222233455667777777777665
No 60
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=89.61 E-value=3.2 Score=36.02 Aligned_cols=104 Identities=10% Similarity=0.036 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCC--eEEEEeCCCCh----hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGL--NVTVLITQNNL----PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~~~~----~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
|+||+|+..+.. .-+.++.++|.+.+| +|..+.+.... ++.++. ++.+..++.. .+..
T Consensus 1 m~rI~vl~SG~g---~~~~~~l~~l~~~~~~~~i~~Vvs~~~~~~~~~~A~~~-------gIp~~~~~~~---~~~~--- 64 (216)
T 2ywr_A 1 MLKIGVLVSGRG---SNLQAIIDAIESGKVNASIELVISDNPKAYAIERCKKH-------NVECKVIQRK---EFPS--- 64 (216)
T ss_dssp CEEEEEEECSCC---HHHHHHHHHHHTTSSCEEEEEEEESCTTCHHHHHHHHH-------TCCEEECCGG---GSSS---
T ss_pred CCEEEEEEeCCc---HHHHHHHHHHHhCCCCCeEEEEEeCCCChHHHHHHHHc-------CCCEEEeCcc---cccc---
Confidence 679988766443 347788888988888 77666554322 223333 5666544321 1110
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
++...+.+.+.|++. +||++|+-.+.. ....+-....-.++-++++
T Consensus 65 --------r~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 111 (216)
T 2ywr_A 65 --------KKEFEERMALELKKK--GVELVVLAGFMRILSHNFLKYFPNKVINIHPS 111 (216)
T ss_dssp --------HHHHHHHHHHHHHHT--TCCEEEESSCCSCCCHHHHTTSTTCEEEEESS
T ss_pred --------hhhhhHHHHHHHHhc--CCCEEEEeCchhhCCHHHHhhccCCeEEEcCC
Confidence 113446677888889 999999876633 4445555555566776655
No 61
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.59 E-value=4.1 Score=34.62 Aligned_cols=97 Identities=12% Similarity=0.021 Sum_probs=61.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC------hhhhhhhccCCCCCCeeEEEcCCCCCCCCC-Chh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN------LPLLDSLNANHPSTSLQSLVLPQPKWPAGS-PAT 77 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~------~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~-~~~ 77 (473)
...|++++..+.|-..-.+.+|-+.+.+|++|.|+..-.. ...++.. ++++..... ++. ...
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-------~v~~~~~g~----gf~~~~~ 96 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-------GVEFQVMAT----GFTWETQ 96 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-------TCEEEECCT----TCCCCGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-------CcEEEEccc----ccccCCC
Confidence 3578999999999999999999999999999999976542 1223332 366665553 111 111
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG 115 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~ 115 (473)
....-..... ..-....+.+.+. ++|+||.|.+.+
T Consensus 97 ~~~~~~~~a~-~~l~~a~~~l~~~--~yDlvILDEi~~ 131 (196)
T 1g5t_A 97 NREADTAACM-AVWQHGKRMLADP--LLDMVVLDELTY 131 (196)
T ss_dssp GHHHHHHHHH-HHHHHHHHHTTCT--TCSEEEEETHHH
T ss_pred CcHHHHHHHH-HHHHHHHHHHhcC--CCCEEEEeCCCc
Confidence 1111111122 3334455666666 999999998743
No 62
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=87.13 E-value=5.7 Score=34.28 Aligned_cols=105 Identities=11% Similarity=0.052 Sum_probs=64.4
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhh----hhhhccCCCCCCeeEEEcCCCCCCCCCChh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPL----LDSLNANHPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~----i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
+|+||.++.++. |+ -+.++.++|.+. +|+|..+.+...... .++. ++.+..++.. .+..
T Consensus 2 ~m~ki~vl~sG~-g~--~~~~~l~~l~~~~l~~~I~~Vit~~~~~~v~~~A~~~-------gIp~~~~~~~---~~~~-- 66 (212)
T 3av3_A 2 HMKRLAVFASGS-GT--NFQAIVDAAKRGDLPARVALLVCDRPGAKVIERAARE-------NVPAFVFSPK---DYPS-- 66 (212)
T ss_dssp CCEEEEEECCSS-CH--HHHHHHHHHHTTCCCEEEEEEEESSTTCHHHHHHHHT-------TCCEEECCGG---GSSS--
T ss_pred CCcEEEEEEECC-cH--HHHHHHHHHHhCCCCCeEEEEEeCCCCcHHHHHHHHc-------CCCEEEeCcc---cccc--
Confidence 478998777654 43 367778888886 799987776532222 2222 5666544321 1110
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.+...+.+.+.+++. +||++|+-.+.. ....+-..+.-.++-++++
T Consensus 67 ---------~~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 113 (212)
T 3av3_A 67 ---------KAAFESEILRELKGR--QIDWIALAGYMRLIGPTLLSAYEGKIVNIHPS 113 (212)
T ss_dssp ---------HHHHHHHHHHHHHHT--TCCEEEESSCCSCCCHHHHHHTTTCEEEEESS
T ss_pred ---------hhhhHHHHHHHHHhc--CCCEEEEchhhhhCCHHHHhhhcCCEEEEecC
Confidence 113445677888889 999999876643 4445556666667777665
No 63
>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=84.88 E-value=3.8 Score=35.91 Aligned_cols=95 Identities=13% Similarity=0.003 Sum_probs=58.6
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
|.|..+||.|+-.+..|- +||+.|.++||+|+.+..+ +.+... . +..+|..
T Consensus 2 ~~~~~mkI~IIG~G~~G~-----sLA~~L~~~G~~V~~~~~~---~~~~~a-------D--ilavP~~------------ 52 (232)
T 3dfu_A 2 MQAPRLRVGIFDDGSSTV-----NMAEKLDSVGHYVTVLHAP---EDIRDF-------E--LVVIDAH------------ 52 (232)
T ss_dssp -CCCCCEEEEECCSCCCS-----CHHHHHHHTTCEEEECSSG---GGGGGC-------S--EEEECSS------------
T ss_pred CCCCCcEEEEEeeCHHHH-----HHHHHHHHCCCEEEEecCH---HHhccC-------C--EEEEcHH------------
Confidence 556778999999888874 5899999999999987764 122222 2 6666631
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
.+.+-+.++.... +++.+|+|.... ....-+...|+.++..+|.
T Consensus 53 --------ai~~vl~~l~~~l--~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm 99 (232)
T 3dfu_A 53 --------GVEGYVEKLSAFA--RRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPI 99 (232)
T ss_dssp --------CHHHHHHHHHTTC--CTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEE
T ss_pred --------HHHHHHHHHHHhc--CCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeC
Confidence 1112223333445 788888885422 2334445668777776655
No 64
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=84.07 E-value=1.5 Score=38.20 Aligned_cols=113 Identities=13% Similarity=0.085 Sum_probs=67.0
Q ss_pred CccEEEEEcCCCCCChHH----HHHHHHHHHhC-CCeEEEEeCCC-ChhhhhhhccCCCCCCe-eEEEcCCCCCCCCCCh
Q 042753 4 AGAHILVYPFPTSGHIIP----LLDLTNRLLTL-GLNVTVLITQN-NLPLLDSLNANHPSTSL-QSLVLPQPKWPAGSPA 76 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p----~l~La~~L~~r-Gh~Vt~~~~~~-~~~~i~~~~~~~~~~~~-~f~~l~~~~~~~~~~~ 76 (473)
+|++|+++.-...|.++| ++.-|++|++. |-+|+.++... ..+.++.... -|. +.+.+..+......+
T Consensus 2 ~m~~ilV~~E~~~g~l~~~s~ell~~A~~La~~~g~~v~av~~G~~~~~~~~~~~~----~Gad~v~~v~~~~~~~~~~- 76 (217)
T 3ih5_A 2 NANNLFVYCEIEEGIVADVSLELLTKGRSLANELNCQLEAVVAGTGLKEIEKQILP----YGVDKLHVFDAEGLYPYTS- 76 (217)
T ss_dssp -CCCEEEECCEETTEECHHHHHHHHHHHHHHHHHTCCEEEEEEESCCTTTHHHHGG----GTCSEEEEEECGGGSSCCH-
T ss_pred CcccEEEEEECcCCEECHHHHHHHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHh----cCCCEEEEecCcccccCCH-
Confidence 588899988766677766 57778888874 77777665432 2222332211 022 222233211111110
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEEEecc
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
......+.+++++. +||+|++..... .+..+|.++++|.+.-++.
T Consensus 77 -----------~~~a~~l~~~i~~~--~p~~Vl~g~t~~G~~laprlAa~L~~~~~sdv~~ 124 (217)
T 3ih5_A 77 -----------LPHTSILVNLFKEE--QPQICLMGATVIGRDLGPRVSSALTSGLTADCTS 124 (217)
T ss_dssp -----------HHHHHHHHHHHHHH--CCSEEEEECSHHHHHHHHHHHHHTTCCCBCSCSE
T ss_pred -----------HHHHHHHHHHHHhc--CCCEEEEeCCcchhhHHHHHHHHhCCCccceEEE
Confidence 13345666677777 899999987655 3568899999998875443
No 65
>3ty2_A 5'-nucleotidase SURE; surviVal protein, phosphatase, hydrolase; HET: MSE; 1.89A {Coxiella burnetii} SCOP: c.106.1.0
Probab=83.88 E-value=2.2 Score=38.04 Aligned_cols=43 Identities=16% Similarity=-0.036 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
.++|||+.-==+. |---+.+|+++|.+ +|+|+++.+...+.-.
T Consensus 10 ~~m~ILlTNDDGi-~apGi~aL~~~l~~-~~~V~VVAP~~~~Sg~ 52 (261)
T 3ty2_A 10 PKLRLLLSNDDGV-YAKGLAILAKTLAD-LGEVDVVAPDRNRSGA 52 (261)
T ss_dssp -CCEEEEECSSCT-TCHHHHHHHHHHTT-TSEEEEEEESSCCTTC
T ss_pred CCCeEEEEcCCCC-CCHHHHHHHHHHHh-cCCEEEEecCCCCcCc
Confidence 3678888874333 33447788888877 8999999998765433
No 66
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=83.82 E-value=13 Score=36.53 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=68.7
Q ss_pred eecCccHHH---hhhccCccceee---ccCch-hHHHHHhhCC-----eEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 339 IRGWSQQVA---ILRHKAVGAFLT---HCGWN-SVLEGVSAGV-----VMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 339 v~~~~pq~~---lL~~~~v~~~It---HgG~~-s~~eal~~Gv-----P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
+.+++++.+ ++..+++ ||. .=|+| +.+||+++|+ |+|+--..+--.. + .-|+.++
T Consensus 336 ~~g~v~~~el~~ly~~ADv--~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~----l----~~g~lv~--- 402 (482)
T 1uqt_A 336 LNQHFDRKLLMKIFRYSDV--GLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANE----L----TSALIVN--- 402 (482)
T ss_dssp ECSCCCHHHHHHHHHHCSE--EEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGT----C----TTSEEEC---
T ss_pred eCCCCCHHHHHHHHHHccE--EEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHH----h----CCeEEEC---
Confidence 457788765 5677887 553 33554 8999999998 6766443221111 1 1366666
Q ss_pred CCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
.-+.+++.++|.++|+++ +.-++..++..+.++ . -+.+..++.+++.+.+.
T Consensus 403 --p~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~----~-~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 403 --PYDRDEVAAALDRALTMSLAERISRHAEMLDVIV----K-NDINHWQECFISDLKQI 454 (482)
T ss_dssp --TTCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH----H-TCHHHHHHHHHHHHHHS
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----h-CCHHHHHHHHHHHHHhc
Confidence 357899999999999864 223344444444443 2 46888888999888776
No 67
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, ligase; 2.61A {Anaerococcus prevotii}
Probab=83.81 E-value=4.4 Score=38.81 Aligned_cols=87 Identities=11% Similarity=-0.010 Sum_probs=54.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC-ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN-NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~-~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
++||+++-.+.. .+.+++++.+.|++|+++..+. +....... -.+..++..
T Consensus 7 ~~~ilI~g~g~~-----~~~~~~a~~~~G~~~v~v~~~~~~~~~~~~a--------d~~~~~~~~--------------- 58 (403)
T 4dim_A 7 NKRLLILGAGRG-----QLGLYKAAKELGIHTIAGTMPNAHKPCLNLA--------DEISYMDIS--------------- 58 (403)
T ss_dssp CCEEEEECCCGG-----GHHHHHHHHHHTCEEEEEECSSCCHHHHHHC--------SEEEECCTT---------------
T ss_pred CCEEEEECCcHh-----HHHHHHHHHHCCCEEEEEcCCCCCCcchhhC--------CeEEEecCC---------------
Confidence 578988876643 3668999999999999997653 32222211 123333310
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeC---CCcchHHHHHHHhCCC
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSD---FFLGWTQGLAAELGLP 127 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D---~~~~~~~~~A~~~giP 127 (473)
-.+.+.+++++. ++|+|+.. ........+++++|+|
T Consensus 59 ------d~~~l~~~~~~~--~~d~v~~~~~~~~~~~~a~~~~~~gl~ 97 (403)
T 4dim_A 59 ------NPDEVEQKVKDL--NLDGAATCCLDTGIVSLARICDKENLV 97 (403)
T ss_dssp ------CHHHHHHHTTTS--CCSEEECCSCSTTHHHHHHHHHHHTCS
T ss_pred ------CHHHHHHHHHHc--CCCEEEeCCcchhHHHHHHHHHHcCcC
Confidence 014556667777 89999963 2222345677889986
No 68
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=83.54 E-value=14 Score=32.14 Aligned_cols=105 Identities=13% Similarity=0.027 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChh----hhhhhccCCCCCCeeEEEcCCCCCCCCCChh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLP----LLDSLNANHPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~----~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
+|+||+|+..+. |+ -+.++.++|.+. +++|..+.+..... +.++. ++.+..++.. .+..
T Consensus 21 ~~~rI~~l~SG~-g~--~~~~~l~~l~~~~~~~~I~~Vvt~~~~~~~~~~A~~~-------gIp~~~~~~~---~~~~-- 85 (229)
T 3auf_A 21 HMIRIGVLISGS-GT--NLQAILDGCREGRIPGRVAVVISDRADAYGLERARRA-------GVDALHMDPA---AYPS-- 85 (229)
T ss_dssp TCEEEEEEESSC-CH--HHHHHHHHHHTTSSSEEEEEEEESSTTCHHHHHHHHT-------TCEEEECCGG---GSSS--
T ss_pred CCcEEEEEEeCC-cH--HHHHHHHHHHhCCCCCeEEEEEcCCCchHHHHHHHHc-------CCCEEEECcc---cccc--
Confidence 478998887655 33 477888888876 68887766553212 22222 6776654421 1110
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
++...+.+.+.|++. +||+||+-.+.. ....+-..+...++-++++
T Consensus 86 ---------r~~~~~~~~~~l~~~--~~Dliv~agy~~IL~~~~l~~~~~~~iNiHpS 132 (229)
T 3auf_A 86 ---------RTAFDAALAERLQAY--GVDLVCLAGYMRLVRGPMLTAFPNRILNIHPS 132 (229)
T ss_dssp ---------HHHHHHHHHHHHHHT--TCSEEEESSCCSCCCHHHHHHSTTCEEEEESS
T ss_pred ---------hhhccHHHHHHHHhc--CCCEEEEcChhHhCCHHHHhhccCCEEEEccC
Confidence 113446677888889 999999876643 4455555666666776665
No 69
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=82.96 E-value=13 Score=34.84 Aligned_cols=47 Identities=17% Similarity=0.185 Sum_probs=38.2
Q ss_pred CccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 4 AGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 4 ~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
.|++|++++ -++-|-..-...||..|+++|++|.++..+.. ..+...
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~ 71 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDI 71 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHH
Confidence 477887666 67779999999999999999999999999874 344433
No 70
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=82.78 E-value=2.2 Score=37.96 Aligned_cols=42 Identities=24% Similarity=0.241 Sum_probs=30.5
Q ss_pred CCCCccEEEEEcCCCC----------C-ChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPFPTS----------G-HIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~----------G-H~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++.|+||+++..... | ...=++.-...|.+.|++|+++++.
T Consensus 5 m~~~mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~ 57 (247)
T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASET 57 (247)
T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred ccccCCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6667899998776532 2 1444777788999999999999975
No 71
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=82.74 E-value=12 Score=29.75 Aligned_cols=110 Identities=14% Similarity=0.046 Sum_probs=61.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC------hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN------LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~------~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
..++++++.+. =+.|++++++.|.++|.+|+++ .... .+.+++.. ..+.+....... .-...+.
T Consensus 18 ~~~~llIaGG~--GiaPl~sm~~~l~~~~~~v~l~-g~R~~~~~~~~~el~~l~-----~~~~~~~~~~~~--~~~~~d~ 87 (142)
T 3lyu_A 18 FGKILAIGAYT--GIVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAV-----TRHIVEPVPLNP--NQDFLAN 87 (142)
T ss_dssp CSEEEEEEETT--HHHHHHHHHHHHHHTTCEEEEE-EEEEGGGCCSHHHHHTTS-----SEEEEEEECCCT--TSCHHHH
T ss_pred CCeEEEEECcC--cHHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHH-----hheEEEEeeccc--ccCCCCC
Confidence 56788877654 4899999999999999999998 5432 23333321 123333221110 0001121
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCc-EEEeCCCcc--hHHHHHHHhCCCcEE
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPV-AILSDFFLG--WTQGLAAELGLPRVV 130 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD-~VV~D~~~~--~~~~~A~~~giP~v~ 130 (473)
+..... ...+.+.+++.+. +.| +.+|.+... .....++++|||..-
T Consensus 88 ~~g~~G----~v~~~l~~~~~~~--~~~~vy~CGP~~Mm~av~~~l~~~~~~~~~ 136 (142)
T 3lyu_A 88 MKNVSQ----RLKEKVRELLESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPMLE 136 (142)
T ss_dssp HHHHHH----HHHHHHHHHHHSS--CCSEEEEESCHHHHHHHHHHHHHHTCCBC-
T ss_pred CCCCcc----chhHHHHHhcccC--CCCEEEEECCHHHHHHHHHHHHHcCCchhh
Confidence 111111 2223455666665 556 667776533 456788899999753
No 72
>1j9j_A Stationary phase surviVal protein; SURE protein, unknown function; 1.90A {Thermotoga maritima} SCOP: c.106.1.1 PDB: 1ilv_A 1j9k_A* 1j9l_A*
Probab=81.92 E-value=3.9 Score=36.19 Aligned_cols=109 Identities=15% Similarity=-0.004 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCC-C-----CCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQP-K-----WPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~-~-----~~~~~~~~~~ 79 (473)
||||+.-==+. |--=+..|+++|.+.| +|+++.+...+.-....+. ....+++..++.. . .++-| .
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siT--l~~pl~~~~~~~~~~~~~~~v~GTP-a--- 72 (247)
T 1j9j_A 1 MRILVTNDDGI-QSKGIIVLAELLSEEH-EVFVVAPDKERSATGHSIT--IHVPLWMKKVFISERVVAYSTTGTP-A--- 72 (247)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCC--CSSCCCEEECCCSSSEEEEEESSCH-H---
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCccccc--CCCCeEEEEeccCCCCceEEECCcH-H---
Confidence 36666552222 2233778899998888 8999999876544333221 1112444444321 0 01111 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEe----------CCCcc---hHHHHHHHhCCCcEEEec
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILS----------DFFLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~----------D~~~~---~~~~~A~~~giP~v~~~~ 133 (473)
+ -..-.+..++ .. +||+||+ |.+++ .++.-|..+|||.|.++.
T Consensus 73 ----D----CV~lal~~l~-~~--~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 128 (247)
T 1j9j_A 73 ----D----CVKLAYNVVM-DK--RVDLIVSGVNRGPNMGMDILHSGTVSGAMEGAMMNIPSIAISS 128 (247)
T ss_dssp ----H----HHHHHHHTTS-TT--CCSEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCCEEEEEE
T ss_pred ----H----HHHHHHHhhc-cC--CCCEEEECCccCCCCCcCeecchhHHHHHHHHhcCCCeEEEec
Confidence 0 1112333334 34 8999995 33333 234555678999999865
No 73
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=81.61 E-value=0.57 Score=45.46 Aligned_cols=40 Identities=15% Similarity=0.193 Sum_probs=30.7
Q ss_pred CccEEEEEcCC---C--CCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFP---T--SGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~---~--~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.++||+++... + .|=......++++|+++||+|++++...
T Consensus 45 ~~mrI~~v~~~~~p~~~~GG~~~v~~la~~L~~~GheV~Vvt~~~ 89 (413)
T 2x0d_A 45 KGKRLNLLVPSINQEHMFGGISTALKLFEQFDNKKFKKRIILTDA 89 (413)
T ss_dssp CSCEEEEEESCCCGGGCSHHHHHHHHHHTTSCTTTCEEEEEESSC
T ss_pred CCceEEEEeCCCCccccccHHHHHHHHHHHHHHcCCceEEEEecC
Confidence 47899866622 2 2444568999999999999999999864
No 74
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=81.31 E-value=6.7 Score=36.46 Aligned_cols=100 Identities=11% Similarity=0.057 Sum_probs=56.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC--------hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN--------LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPAT 77 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--------~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~ 77 (473)
+||+|+ |--+-...+.++|.+.||+|..+.+... .+...+. ++.+...+. +...
T Consensus 23 mrIvf~-----G~~~fa~~~L~~L~~~~~~i~~Vvt~pd~~~~~~~v~~~A~~~-------gIpv~~~~~-----~~~~- 84 (329)
T 2bw0_A 23 MKIAVI-----GQSLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKD-------GVPVFKYSR-----WRAK- 84 (329)
T ss_dssp CEEEEE-----CCHHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHH-------TCCEEECSC-----CEET-
T ss_pred CEEEEE-----cCcHHHHHHHHHHHHCCCeEEEEEeCCCcCCCCCHHHHHHHHc-------CCCEEecCc-----cccc-
Confidence 689888 2223344577899999999987766221 1112222 455443321 0000
Q ss_pred hHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 78 RLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
....+.+.+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 85 ----------~~~~~~~~~~l~~~--~~Dliv~a~y~~ilp~~il~~~~~g~iNiHpSL 131 (329)
T 2bw0_A 85 ----------GQALPDVVAKYQAL--GAELNVLPFCSQFIPMEIISAPRHGSIIYHPSL 131 (329)
T ss_dssp ----------TEECHHHHHHHHTT--CCSEEEESSCSSCCCHHHHTCSTTCEEEEESSC
T ss_pred ----------ccccHHHHHHHHhc--CCCEEEEeehhhhCCHHHHhhCcCCEEEEcCCc
Confidence 01224556678888 999999876633 33444444455567776664
No 75
>1l5x_A SurviVal protein E; structural genomics, putative acid phosphatase, mixed alpha/ protein, N-terminal rossmann-fold like; 2.00A {Pyrobaculum aerophilum} SCOP: c.106.1.1
Probab=80.82 E-value=5.4 Score=36.00 Aligned_cols=109 Identities=20% Similarity=0.106 Sum_probs=58.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC-----CCCCCChhhHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK-----WPAGSPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~-----~~~~~~~~~~~ 80 (473)
||||+.-==|. +---+..|++.|.+.| +|+++.+...+.-....+. ....+++..++... .++-| .
T Consensus 1 M~ILlTNDDGi-~ApGi~aL~~aL~~~g-~V~VVAP~~~qSg~g~siT--l~~pl~~~~~~~~~~~~~~v~GTP-a---- 71 (280)
T 1l5x_A 1 MKILVTNDDGV-HSPGLRLLYQFALSLG-DVDVVAPESPKSATGLGIT--LHKPLRMYEVDLCGFRAIATSGTP-S---- 71 (280)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHGGGS-EEEEEEESSCTTTSCSSCC--CSSCBCEEEEECSSSEEEEESSCH-H----
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCccccc--CCCCeEEEEeccCCCceEEECCcH-H----
Confidence 36666652222 2233778899999988 8999999876544333221 11124444432210 01111 1
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeC-----------CCcc---hHHHHHHHhCCCcEEEecc
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSD-----------FFLG---WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D-----------~~~~---~~~~~A~~~giP~v~~~~~ 134 (473)
+ ...-.+..+ .. +||+||+. .+.+ .++.-|..+|||.|.++..
T Consensus 72 ---D----CV~lal~~l--~~--~PDLVvSGIN~G~Nlg~d~v~ySGTVgAA~Ea~~~GiPaIA~S~~ 128 (280)
T 1l5x_A 72 ---D----TVYLATFGL--GR--KYDIVLSGINLGDNTSLQVILSSGTLGAAFQAALLGIPALAYSAY 128 (280)
T ss_dssp ---H----HHHHHHHHH--TS--CCSEEEEEEEEBCCCSHHHHTTCHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ---H----HHHHHHhcC--CC--CCCEEEECCccCCcCCccccccchhHHHHHHHHHcCCCeEEEEcc
Confidence 0 111233333 45 89999963 3333 2344556789999999763
No 76
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=79.40 E-value=13 Score=32.02 Aligned_cols=108 Identities=14% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChh----hhhhhccCCCCCCeeEEEcCCCCCCCCCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLP----LLDSLNANHPSTSLQSLVLPQPKWPAGSP 75 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~----~i~~~~~~~~~~~~~f~~l~~~~~~~~~~ 75 (473)
|+.+.+||+++..+. || -+.+|.++..+ .+++|..+.+..-.. +.++. ++.+..++.. .++.
T Consensus 1 ~~~~~~riavl~SG~-Gs--nl~all~~~~~~~~~eI~~Vis~~~~a~~~~~A~~~-------gIp~~~~~~~---~~~~ 67 (215)
T 3tqr_A 1 MNREPLPIVVLISGN-GT--NLQAIIGAIQKGLAIEIRAVISNRADAYGLKRAQQA-------DIPTHIIPHE---EFPS 67 (215)
T ss_dssp ---CCEEEEEEESSC-CH--HHHHHHHHHHTTCSEEEEEEEESCTTCHHHHHHHHT-------TCCEEECCGG---GSSS
T ss_pred CCCCCcEEEEEEeCC-cH--HHHHHHHHHHcCCCCEEEEEEeCCcchHHHHHHHHc-------CCCEEEeCcc---ccCc
Confidence 677888998776643 33 34556666655 368998877743211 23333 6766655421 1110
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
+....+.+.+.+++. +||++|+-.+.. ....+-....-.++-++++
T Consensus 68 -----------r~~~d~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 114 (215)
T 3tqr_A 68 -----------RTDFESTLQKTIDHY--DPKLIVLAGFMRKLGKAFVSHYSGRMINIHPS 114 (215)
T ss_dssp -----------HHHHHHHHHHHHHTT--CCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred -----------hhHhHHHHHHHHHhc--CCCEEEEccchhhCCHHHHhhccCCeEEeCcc
Confidence 113346778889999 999999876643 4445555566666777665
No 77
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=79.08 E-value=6 Score=37.52 Aligned_cols=37 Identities=16% Similarity=0.023 Sum_probs=31.8
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
|++|+++. -++.|-..-...+|..|+++|++|.++..
T Consensus 1 M~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~ 38 (374)
T 3igf_A 1 MALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL 38 (374)
T ss_dssp -CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC
Confidence 78888776 45669999999999999999999999998
No 78
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=77.93 E-value=7.2 Score=33.94 Aligned_cols=150 Identities=9% Similarity=0.016 Sum_probs=82.5
Q ss_pred HhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccH
Q 042753 266 WLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQ 345 (473)
Q Consensus 266 ~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq 345 (473)
|++- .+++++.|..|..+ ...+..|.+.+..+.++-+.. .+.+.+.....++......-+
T Consensus 26 fl~L-~gk~VLVVGgG~va-------~~ka~~Ll~~GA~VtVvap~~------------~~~l~~l~~~~~i~~i~~~~~ 85 (223)
T 3dfz_A 26 MLDL-KGRSVLVVGGGTIA-------TRRIKGFLQEGAAITVVAPTV------------SAEINEWEAKGQLRVKRKKVG 85 (223)
T ss_dssp EECC-TTCCEEEECCSHHH-------HHHHHHHGGGCCCEEEECSSC------------CHHHHHHHHTTSCEEECSCCC
T ss_pred EEEc-CCCEEEEECCCHHH-------HHHHHHHHHCCCEEEEECCCC------------CHHHHHHHHcCCcEEEECCCC
Confidence 4554 57889999888665 234566777788877665432 133333333333433233233
Q ss_pred HHhhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHH-----HHHHhcceEEeccCCCCCCCHHHHH
Q 042753 346 VAILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQL-----LVDQLGVGIRVGEGTRNIPESDELA 416 (473)
Q Consensus 346 ~~lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~r-----v~~~~G~G~~l~~~~~~~~~~~~l~ 416 (473)
.+.|..+++ +|.--|.-.+.+.++. |+|+-+ .|.+..+.. +.+. ++-+.+..+...-.-+..|+
T Consensus 86 ~~dL~~adL--VIaAT~d~~~N~~I~~~ak~gi~VNv----vD~p~~~~f~~Paiv~rg-~l~iaIST~G~sP~la~~iR 158 (223)
T 3dfz_A 86 EEDLLNVFF--IVVATNDQAVNKFVKQHIKNDQLVNM----ASSFSDGNIQIPAQFSRG-RLSLAISTDGASPLLTKRIK 158 (223)
T ss_dssp GGGSSSCSE--EEECCCCTHHHHHHHHHSCTTCEEEC---------CCSEECCEEEEET-TEEEEEECTTSCHHHHHHHH
T ss_pred HhHhCCCCE--EEECCCCHHHHHHHHHHHhCCCEEEE----eCCcccCeEEEeeEEEeC-CEEEEEECCCCCcHHHHHHH
Confidence 445666776 8888887766666554 555433 355544432 2212 34444552113334456778
Q ss_pred HHHHHHhCCc-HHHHHHHHHHHHHHHH
Q 042753 417 RLLAQSVDGP-RRERLKARELSGAALS 442 (473)
Q Consensus 417 ~~i~~~l~~~-~~~~~~a~~~~~~~~~ 442 (473)
+.|.+.+... ..+-+.+.++++.+++
T Consensus 159 ~~ie~~lp~~~~~~~~~~~~~R~~vk~ 185 (223)
T 3dfz_A 159 EDLSSNYDESYTQYTQFLYECRVLIHR 185 (223)
T ss_dssp HHHHHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 8888777654 5666777777777764
No 79
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=77.62 E-value=25 Score=29.14 Aligned_cols=101 Identities=10% Similarity=-0.000 Sum_probs=54.0
Q ss_pred hhhHHHhcCCCCCcEEEEEeCC-cccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEe
Q 042753 261 HDVLTWLDSRRDESVVYVCFGS-RYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVI 339 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs-~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v 339 (473)
..+-++|.. ++...||-|. .. .+....++..+.+-++|-+++... ..++.... ...++
T Consensus 35 ~~lg~~La~---~g~~lVsGGg~~G-----im~aa~~gAl~~gG~tigVlP~~~--------~~~~~~~~-----~~~i~ 93 (176)
T 2iz6_A 35 NELGKQIAT---HGWILLTGGRSLG-----VMHEAMKGAKEAGGTTIGVLPGPD--------TSEISDAV-----DIPIV 93 (176)
T ss_dssp HHHHHHHHH---TTCEEEEECSSSS-----HHHHHHHHHHHTTCCEEEEECC-------------CCTTC-----SEEEE
T ss_pred HHHHHHHHH---CCCEEEECCCccC-----HhHHHHHHHHHcCCEEEEEeCchh--------hhhhccCC-----ceeEE
Confidence 455556655 4567777776 43 233344444455666666665421 11221110 11233
Q ss_pred ecCccH-HHhhhccCccceeeccCchhHHHH---HhhCCeEecCccc
Q 042753 340 RGWSQQ-VAILRHKAVGAFLTHCGWNSVLEG---VSAGVVMLTWPMD 382 (473)
Q Consensus 340 ~~~~pq-~~lL~~~~v~~~ItHgG~~s~~ea---l~~GvP~l~~P~~ 382 (473)
.+..++ +.++..-+-..++--||.||+.|+ +.+++|++++|.|
T Consensus 94 ~~~~~~Rk~~m~~~sda~IvlpGg~GTL~E~~~al~~~kpV~~l~~~ 140 (176)
T 2iz6_A 94 TGLGSARDNINALSSNVLVAVGMGPGTAAEVALALKAKKPVVLLGTQ 140 (176)
T ss_dssp CCCCSSSCCCCGGGCSEEEEESCCHHHHHHHHHHHHTTCCEEEESCC
T ss_pred cCCHHHHHHHHHHhCCEEEEecCCccHHHHHHHHHHhCCcEEEEcCc
Confidence 344443 333333333357778999986654 7799999999984
No 80
>3pdi_B Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=77.38 E-value=9.5 Score=37.28 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
++|++++.. -.-..++++-|.+-|.+|..+.+........+... ..+ . + . .+
T Consensus 313 Gkrv~i~~~-----~~~~~~l~~~L~elGm~vv~~~~~~~~~~~~~~~~----~~v--~-~-----------~---D~-- 364 (458)
T 3pdi_B 313 SARTAIAAD-----PDLLLGFDALLRSMGAHTVAAVVPARAAALVDSPL----PSV--R-V-----------G---DL-- 364 (458)
T ss_dssp TCEEEEECC-----HHHHHHHHHHHHTTTCEEEEEEESSCCSCCTTTTS----SCE--E-E-----------S---HH--
T ss_pred CCEEEEECC-----cHHHHHHHHHHHHCCCEEEEEEECCCChhhhhCcc----CcE--E-e-----------C---CH--
Confidence 578877543 34557888999888999999887643222221100 000 0 0 0 01
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
..+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 365 -------~~le~~i~~~--~pDllig~~~---~~~~a~k~gip~~~~ 399 (458)
T 3pdi_B 365 -------EDLEHAARAG--QAQLVIGNSH---ALASARRLGVPLLRA 399 (458)
T ss_dssp -------HHHHHHHHHH--TCSEEEECTT---HHHHHHHTTCCEEEC
T ss_pred -------HHHHHHHHhc--CCCEEEEChh---HHHHHHHcCCCEEEe
Confidence 1355777788 9999999855 678999999999874
No 81
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=77.06 E-value=9.5 Score=35.27 Aligned_cols=39 Identities=10% Similarity=-0.019 Sum_probs=34.2
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|++|+++. -++-|-..-...||..|+++|++|.++..+.
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 46776665 6788999999999999999999999999886
No 82
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}
Probab=76.98 E-value=12 Score=34.53 Aligned_cols=35 Identities=17% Similarity=0.166 Sum_probs=21.7
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLG--LNVTVLIT 41 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~ 41 (473)
..|++|++. ++.|.+ -..|+++|.++| ++|+.+..
T Consensus 22 ~~~~~vlVt--GatG~i--G~~l~~~L~~~g~~~~v~~~~~ 58 (346)
T 4egb_A 22 SNAMNILVT--GGAGFI--GSNFVHYMLQSYETYKIINFDA 58 (346)
T ss_dssp --CEEEEEE--TTTSHH--HHHHHHHHHHHCTTEEEEEEEC
T ss_pred cCCCeEEEE--CCccHH--HHHHHHHHHhhCCCcEEEEEec
Confidence 346777655 344544 357899999999 56655554
No 83
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=76.49 E-value=11 Score=34.83 Aligned_cols=101 Identities=15% Similarity=0.113 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh----------hhhhccCCCCCCeeEEEcCCCCCCCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL----------LDSLNANHPSTSLQSLVLPQPKWPAG 73 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----------i~~~~~~~~~~~~~f~~l~~~~~~~~ 73 (473)
.|+||+|+-.|..+ .+..++|.++||+|..+.+...... +.+... ..++.+.. + +.+
T Consensus 3 ~mmrIvf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~pd~~~gRg~~l~~~pv~~~A~---~~gIpv~~-~----~~~ 69 (317)
T 3rfo_A 3 AMIKVVFMGTPDFS-----VPVLRRLIEDGYDVIGVVTQPDRPVGRKKVLTPTPVKVEAE---KHGIPVLQ-P----LRI 69 (317)
T ss_dssp TTSEEEEECCSTTH-----HHHHHHHHHTTCEEEEEECCCCCEETTTTEECCCHHHHHHH---HTTCCEEC-C----SCT
T ss_pred CceEEEEEeCCHHH-----HHHHHHHHHCCCcEEEEEeCCCcccCCCcccCCCHHHHHHH---HcCCCEEc-c----ccC
Confidence 48999999877654 3456788888999998887543211 111000 01343331 1 011
Q ss_pred CChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 74 SPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
. .+...+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 70 ~----------------~~~~~~~l~~~--~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl 114 (317)
T 3rfo_A 70 R----------------EKDEYEKVLAL--EPDLIVTAAFGQIVPNEILEAPKYGCINVHASL 114 (317)
T ss_dssp T----------------SHHHHHHHHHH--CCSEEEESSCCSCCCHHHHHSSTTCEEEEESSC
T ss_pred C----------------CHHHHHHHHhc--CCCEEEEcCchhhCCHHHHhhCcCCEEEECCcc
Confidence 1 11224556777 999999886633 33344444455567776664
No 84
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=76.28 E-value=12 Score=36.79 Aligned_cols=111 Identities=14% Similarity=0.019 Sum_probs=71.7
Q ss_pred CeEeecCccHH---HhhhccCccceee--ccCch-hHHHHHhhC---CeEecCcccccchhhHHHHHHHhcceEEeccCC
Q 042753 336 GYVIRGWSQQV---AILRHKAVGAFLT--HCGWN-SVLEGVSAG---VVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGT 406 (473)
Q Consensus 336 nv~v~~~~pq~---~lL~~~~v~~~It--HgG~~-s~~eal~~G---vP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 406 (473)
.|+....+|+. .++..+++ +++| .=|+| +.+|++++| .|+|+--+.+ .+.-+. .-|+.++
T Consensus 353 ~V~f~g~v~~~el~aly~~ADv-~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aG----a~~~l~---~~allVn--- 421 (496)
T 3t5t_A 353 TVRIDNDNDVNHTIACFRRADL-LIFNSTVDGQNLSTFEAPLVNERDADVILSETCG----AAEVLG---EYCRSVN--- 421 (496)
T ss_dssp SEEEEECCCHHHHHHHHHHCSE-EEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBT----THHHHG---GGSEEEC---
T ss_pred CEEEeCCCCHHHHHHHHHhccE-EEECcccccCChhHHHHHHhCCCCCCEEEeCCCC----CHHHhC---CCEEEEC---
Confidence 46666777774 45666887 3443 45887 468999986 5655443222 222221 2477777
Q ss_pred CCCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 407 RNIPESDELARLLAQSVDGP-RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 407 ~~~~~~~~l~~~i~~~l~~~-~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
..+.++++++|.++|+++ +.-+++.+++.+.++ .-..+.-++.+++.+.+.
T Consensus 422 --P~D~~~lA~AI~~aL~m~~~er~~r~~~~~~~V~-----~~d~~~W~~~fl~~L~~~ 473 (496)
T 3t5t_A 422 --PFDLVEQAEAISAALAAGPRQRAEAAARRRDAAR-----PWTLEAWVQAQLDGLAAD 473 (496)
T ss_dssp --TTBHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHT-----TCBHHHHHHHHHHHHHHH
T ss_pred --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HCCHHHHHHHHHHHHhhc
Confidence 358999999999999876 344555555555543 345777888888888765
No 85
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=75.59 E-value=13 Score=31.24 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=33.1
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
|+.|.+.. -++.|-..-...||..|+++|++|.++-.+...
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQM 42 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 44555553 677899999999999999999999999876543
No 86
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=75.39 E-value=22 Score=32.99 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
+.+|+|++ -+|.|-..-...||..|+++|++|.++..+...
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 56777665 677799999999999999999999999998543
No 87
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=75.29 E-value=31 Score=27.87 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=58.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh------hhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL------PLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
..++++++.+. | +.|++++++.|.++|.+|+++ ..... +.+++.. ..+.+...... ......+.
T Consensus 23 ~~~~llIaGG~-G-ItPl~sm~~~l~~~~~~v~l~-g~r~~~d~~~~~el~~l~-----~~~~~~~v~~~--~~~~~~~~ 92 (158)
T 3lrx_A 23 FGKILAIGAYT-G-IVEVYPIAKAWQEIGNDVTTL-HVTFEPMVILKEELEKAV-----TRHIVEPVPLN--PNQDFLAN 92 (158)
T ss_dssp CSEEEEEEETT-H-HHHHHHHHHHHHHHTCEEEEE-EECBGGGCCSHHHHHHHS-----SEEEECCBCCC--TTSCHHHH
T ss_pred CCeEEEEEccC-c-HHHHHHHHHHHHhcCCcEEEE-EeCCHHHhhHHHHHHHHH-----hceEEEEeecc--ccccCCCC
Confidence 45777777644 3 999999999999999999998 54332 3333321 12222211110 00001111
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCc-EEEeCCCcc--hHHHHHHHhCCCc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPV-AILSDFFLG--WTQGLAAELGLPR 128 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD-~VV~D~~~~--~~~~~A~~~giP~ 128 (473)
+..... .+.+.+.+++.+. +.| +.+|.+... .....+..+|+|+
T Consensus 93 ~~g~~G----~v~~~l~~~l~~~--~~~~vy~CGP~~mm~~v~~~l~~~Gv~~ 139 (158)
T 3lrx_A 93 MKNVSQ----RLKEKVRELLESE--DWDLVFMVGPVGDQKQVFEVVKEYGVPM 139 (158)
T ss_dssp HHHHHH----HHHHHHHHHHHHS--CCSEEEEESCHHHHHHHHHHHGGGTCCE
T ss_pred CCCCcc----cccHHHHHhhccC--CCCEEEEECCHHHHHHHHHHHHHcCCCE
Confidence 111111 2223455556555 444 777876533 4556778899994
No 88
>2v4n_A Multifunctional protein SUR E; hydrolase, surviVal protein, stationary phase, phosph mononucleotidase, divalent metal ION; 1.7A {Salmonella typhimurium} PDB: 2v4o_A
Probab=73.80 E-value=6.6 Score=34.88 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=58.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC--CC-CCCChhhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK--WP-AGSPATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~--~~-~~~~~~~~~~~ 82 (473)
||||+.-==+. |--=+..|+++|.+.| +|+++.+...+.-....+. ....++...+.... .+ +-|.+
T Consensus 2 M~ILlTNDDGi-~apGi~aL~~~L~~~g-~V~VVAP~~~~Sg~g~aiT--l~~Pl~~~~~~~~~~~v~~GTPaD------ 71 (254)
T 2v4n_A 2 MRILLSNDDGV-HAPGIQTLAKALREFA-DVQVVAPDRNRSGASNSLT--LESSLRTFTFDNGDIAVQMGTPTD------ 71 (254)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEESSCCTTCTTCCC--CSSCCEEEECTTSCEEEETCCHHH------
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEeeCCCCcCccCCcC--CCCCeEEEEeCCCCeEECCCCHHH------
Confidence 47777663332 3334778899998876 9999999876544333221 11124444432110 01 11110
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEe----------CCCcchHHHH---HHHhCCCcEEEec
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILS----------DFFLGWTQGL---AAELGLPRVVFSP 133 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~----------D~~~~~~~~~---A~~~giP~v~~~~ 133 (473)
...-.+..++ .. +||+||+ |.+.+..+.+ |..+|||.|.++.
T Consensus 72 ------CV~lal~~ll-~~--~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 126 (254)
T 2v4n_A 72 ------CVYLGVNALM-RP--RPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSL 126 (254)
T ss_dssp ------HHHHHHHTTS-SS--CCSEEEEEEEESCCCGGGGGGCHHHHHHHTTTTSSSCEEEEEE
T ss_pred ------HHHHHHhhcc-CC--CCCEeeeCCcCCCCCCCCeeccHHHHHHHHHHhcCCCeEEEec
Confidence 1112233344 34 8999995 3333433333 3457999999865
No 89
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=73.57 E-value=3.3 Score=35.05 Aligned_cols=45 Identities=24% Similarity=0.234 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
|+||++...++.|-+ =...+.++|.++|++|.++.++.....+..
T Consensus 1 mk~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~~i~~ 45 (189)
T 2ejb_A 1 MQKIALCITGASGVI-YGIKLLQVLEELDFSVDLVISRNAKVVLKE 45 (189)
T ss_dssp CCEEEEEECSSTTHH-HHHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHhhH
Confidence 579999999888855 478899999999999999999876655554
No 90
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=73.55 E-value=13 Score=35.80 Aligned_cols=99 Identities=17% Similarity=0.117 Sum_probs=55.4
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
|...-+||+++..+-. . | .+.++.++.|++|+++.+.......... .--.++.++.. ... .
T Consensus 1 M~~~~k~l~Il~~~~~--~-~--~i~~aa~~lG~~vv~v~~~~~~~~~~~~------~~d~~~~~~~~-----~d~---~ 61 (425)
T 3vot_A 1 MTKRNKNLAIICQNKH--L-P--FIFEEAERLGLKVTFFYNSAEDFPGNLP------AVERCVPLPLF-----EDE---E 61 (425)
T ss_dssp -CCCCCEEEEECCCTT--C-C--HHHHHHHHTTCEEEEEEETTSCCCCSCT------TEEEEEEECTT-----TCH---H
T ss_pred CCCCCcEEEEECCChh--H-H--HHHHHHHHCCCEEEEEECCCcccccCHh------hccEEEecCCC-----CCH---H
Confidence 6667788888865432 2 2 3567778889999988765321110000 01234444311 101 1
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeC--CCcchHHHHHHHhCCCc
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSD--FFLGWTQGLAAELGLPR 128 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D--~~~~~~~~~A~~~giP~ 128 (473)
...+.+.++.++. ++|.|+.- .....+..+|+.+|+|.
T Consensus 62 --------~~~~~~~~~~~~~--~id~V~~~~e~~~~~~a~l~e~lglpg 101 (425)
T 3vot_A 62 --------AAMDVVRQTFVEF--PFDGVMTLFEPALPFTAKAAEALNLPG 101 (425)
T ss_dssp --------HHHHHHHHHHHHS--CCSEEECCCGGGHHHHHHHHHHTTCSS
T ss_pred --------HHHHHHHHhhhhc--CCCEEEECCchhHHHHHHHHHHcCCCC
Confidence 2234455666777 89999853 22234567889999994
No 91
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=73.28 E-value=11 Score=33.25 Aligned_cols=113 Identities=17% Similarity=0.096 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCC-CCCCCCh--hhHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPK-WPAGSPA--TRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~-~~~~~~~--~~~~~~ 82 (473)
||||+.-==+. |--=+..|+++|.+.| +|+++.+...+.-....+. ....+++..++... .++.... .....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~~l~~~g-~V~VVAP~~~~Sg~g~siT--l~~pl~~~~~~~~~~~~~~~~~~v~GTPa- 75 (244)
T 2e6c_A 1 MRILVTNDDGI-YSPGLWALAEAASQFG-EVFVAAPDTEQSAAGHAIT--IAHPVRAYPHPSPLHAPHFPAYRVRGTPA- 75 (244)
T ss_dssp CEEEEECSSCT-TCHHHHHHHHHHTTTS-EEEEEEECSSCCCCCSSCC--CSSCBEEEECCCCTTSCCCCEEEEESCHH-
T ss_pred CeEEEEcCCCC-CcHhHHHHHHHHHhCC-CEEEEecCCCCcCCccccc--CCCCeEEEEeccCcCCCCCceEEEcCcHH-
Confidence 36666552222 2233778899999888 8999999866443332211 11235665554210 0010100 00000
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEe----------CCCcc---hHHHHHHHhCCCcEEEec
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILS----------DFFLG---WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~----------D~~~~---~~~~~A~~~giP~v~~~~ 133 (473)
+-+ .-.+. + .. +||+||+ |.+++ .++.-|..+|||.|.++.
T Consensus 76 -DCV----~lal~--l-~~--~PDLVvSGIN~G~Nlg~dv~ySGTVgAA~Ea~~~GiPaIA~S~ 129 (244)
T 2e6c_A 76 -DCV----ALGLH--L-FG--PVDLVLSGVNLGSNLGHEIWHSGTVAAAKQGYLFGLSAAAFSV 129 (244)
T ss_dssp -HHH----HHHHH--H-SC--SCCEEEEEEEESCCCGGGGGGCHHHHHHHHHHHTTCEEEEEEE
T ss_pred -HHH----HHHHc--C-CC--CCCEEEECCccCCCCCcCeechHhHHHHHHHHhcCCCeEEEec
Confidence 011 11122 2 34 8999995 33333 334555678999999865
No 92
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=72.81 E-value=26 Score=35.96 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=31.8
Q ss_pred eEeecCccH---------HHhhhccCccceeecc----CchhHHHHHhhCCeEecCccc
Q 042753 337 YVIRGWSQQ---------VAILRHKAVGAFLTHC----GWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 337 v~v~~~~pq---------~~lL~~~~v~~~ItHg----G~~s~~eal~~GvP~l~~P~~ 382 (473)
+.+-.|++. .+++..+++ ||.-+ -..+.+||+++|+|+|+.-..
T Consensus 495 If~P~~L~~~d~lf~~d~~~~~~~adv--fV~PS~~EgfGl~~LEAmA~G~PvI~s~~g 551 (725)
T 3nb0_A 495 IFHPEFLNANNPILGLDYDEFVRGCHL--GVFPSYYEPWGYTPAECTVMGVPSITTNVS 551 (725)
T ss_dssp EECCSCCCTTCSSSCCCHHHHHHHCSE--EECCCSSBSSCHHHHHHHHTTCCEEEETTB
T ss_pred EEeccccCCCCccchhHHHHHHhhceE--EEeccccCCCCHHHHHHHHcCCCEEEeCCC
Confidence 344577765 457888987 66543 345899999999999986543
No 93
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=72.64 E-value=9.5 Score=33.64 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=29.7
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
|+|.+|++ ..+.|=..-...|++.|.++|.+|.++=
T Consensus 20 m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 20 QGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 66766655 3455999999999999999999999974
No 94
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=72.64 E-value=29 Score=32.66 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=29.0
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|.+.++||+++.. | .-...+++++.+.|++|..+.....
T Consensus 7 m~~~~~~ili~g~---g--~~~~~~~~a~~~~G~~v~~~~~~~~ 45 (391)
T 1kjq_A 7 LRPAATRVMLLGS---G--ELGKEVAIECQRLGVEVIAVDRYAD 45 (391)
T ss_dssp TSTTCCEEEEESC---S--HHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred CCCCCCEEEEECC---C--HHHHHHHHHHHHcCCEEEEEECCCC
Confidence 4556789998844 3 2356789999999999988877543
No 95
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=71.89 E-value=4 Score=40.91 Aligned_cols=38 Identities=18% Similarity=0.121 Sum_probs=28.3
Q ss_pred ccEEEEEcC---CC---CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPF---PT---SGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~---~~---~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.||||+++. |. .|=-.-.-+|.++|+++||+|+++++.
T Consensus 9 ~MkIl~vs~E~~P~~K~GGLadvv~~L~~aL~~~G~~V~Vi~P~ 52 (536)
T 3vue_A 9 HMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVISPR 52 (536)
T ss_dssp CCEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CcEEEEEEEeccchhccCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 689999972 21 122234678999999999999999953
No 96
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=71.86 E-value=3.4 Score=35.57 Aligned_cols=46 Identities=20% Similarity=0.147 Sum_probs=38.6
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
.++||++...++.|-+. ...|.+.|.++|++|.++.++.....+..
T Consensus 3 ~~k~IllgvTGaiaa~k-~~~ll~~L~~~g~eV~vv~T~~A~~fi~~ 48 (209)
T 3zqu_A 3 GPERITLAMTGASGAQY-GLRLLDCLVQEEREVHFLISKAAQLVMAT 48 (209)
T ss_dssp SCSEEEEEECSSSCHHH-HHHHHHHHHHTTCEEEEEECHHHHHHHHH
T ss_pred CCCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECccHHHHHHH
Confidence 34899998888888887 88999999999999999999866555543
No 97
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=71.86 E-value=3.6 Score=43.01 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=80.8
Q ss_pred eecCccHHHhhhccCccceeeccCchhHHHHHhhCCeEecCcccccchhhHHHHHHHhcceEEeccC----CCCCCCHHH
Q 042753 339 IRGWSQQVAILRHKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEG----TRNIPESDE 414 (473)
Q Consensus 339 v~~~~pq~~lL~~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~----~~~~~~~~~ 414 (473)
+.++.+-.++|..+++ +||-- ...+.|.+..++|+|......|++..-. + | ...+-. ..---+.++
T Consensus 603 ~~~~~di~~ll~~aD~--lITDy-SSv~fD~~~l~kPiif~~~D~~~Y~~~~----r-g--~y~d~~~~~pg~~~~~~~e 672 (729)
T 3l7i_A 603 VSNYNDVSELFLISDC--LITDY-SSVMFDYGILKRPQFFFAYDIDKYDKGL----R-G--FYMNYMEDLPGPIYTEPYG 672 (729)
T ss_dssp CTTCSCHHHHHHTCSE--EEESS-CTHHHHHGGGCCCEEEECTTTTTTTSSC----C-S--BSSCTTSSSSSCEESSHHH
T ss_pred CCCCcCHHHHHHHhCE--EEeec-hHHHHhHHhhCCCEEEecCCHHHHhhcc----C-C--cccChhHhCCCCeECCHHH
Confidence 4456677889999997 89885 4578899999999999877666654310 1 2 222200 011247889
Q ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhh
Q 042753 415 LARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINEL 464 (473)
Q Consensus 415 l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~ 464 (473)
|.++|.....+.+.|+++.+++.+.+-.. .+|.++++.++.+.+....-
T Consensus 673 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~dg~as~ri~~~i~~~~~~~ 721 (729)
T 3l7i_A 673 LAKELKNLDKVQQQYQEKIDAFYDRFCSV-DNGKASQYIGDLIHKDIKEQ 721 (729)
T ss_dssp HHHHHTTHHHHHHHTHHHHHHHHHHHSTT-CCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhccchhHHHHHHHHHHHhCCc-cCChHHHHHHHHHHhcCcCc
Confidence 99999887764347888888888888654 67888888888888776654
No 98
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=71.83 E-value=22 Score=31.45 Aligned_cols=124 Identities=14% Similarity=0.069 Sum_probs=68.5
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeC------CCC--hhhhhhhccCCCCCCeeEEEcCCCCCCCCCC
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLIT------QNN--LPLLDSLNANHPSTSLQSLVLPQPKWPAGSP 75 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~------~~~--~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~ 75 (473)
|+.|++.. ..+.|-..-...|++.|.++|++|.++=+ +.. ...+++.... ....+...+..+ ..+
T Consensus 26 m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~g~~~~~~D~~~~~~~~g~--~~~~~~~~~~~p----~sP 99 (251)
T 3fgn_A 26 MTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQTGTARGDDDLAEVGRLAGV--TQLAGLARYPQP----MAP 99 (251)
T ss_dssp CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEECCGGGTCCHHHHHHHHHCC--CEEEEEEECSSS----SCH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeecCCCCCCHHHHHHHHHcCC--CCCCCCeeECCC----CCh
Confidence 55555544 44669999999999999999999999742 111 1122222110 001222222211 111
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc----------chHHHHHHHhCCCcEEEecchH
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFL----------GWTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~----------~~~~~~A~~~giP~v~~~~~~~ 136 (473)
. .............+.+.+.+++...++|+||+|... .....+|+.++.|+|.+.....
T Consensus 100 ~--~aa~~~~~~~~~~~~i~~~~~~l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~ 168 (251)
T 3fgn_A 100 A--AAAEHAGMALPARDQIVRLIADLDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADL 168 (251)
T ss_dssp H--HHHHHTTCCCCCHHHHHHHHHTTCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSST
T ss_pred H--HHHHHcCCCCCCHHHHHHHHHHHHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCC
Confidence 1 100000000012345666666655488999998741 2456899999999999876643
No 99
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=70.94 E-value=4.8 Score=33.55 Aligned_cols=43 Identities=14% Similarity=0.145 Sum_probs=35.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
+||++...++.|=+. ...+.+.|.++|++|.++.++...+.+.
T Consensus 6 k~IllgvTGs~aa~k-~~~ll~~L~~~g~~V~vv~T~~A~~fi~ 48 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN-ISHYIIELKSKFDEVNVIASTNGRKFIN 48 (175)
T ss_dssp CEEEEEECSSGGGGG-HHHHHHHHTTTCSEEEEEECTGGGGGSC
T ss_pred CEEEEEEeCHHHHHH-HHHHHHHHHHCCCEEEEEECcCHHHHhh
Confidence 689888887777665 8899999999999999999986655443
No 100
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=70.57 E-value=9.8 Score=37.46 Aligned_cols=90 Identities=16% Similarity=0.107 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh----hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP----LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++||+++..+ .+. .++++.|.+-|-+|+.+++..... .+.... +.....+. ..
T Consensus 332 GKrv~i~~~~--~~~---~~l~~~L~ElGmevv~~gt~~~~~~d~~~~~~~l------~~~~~i~~---------d~--- 388 (483)
T 3pdi_A 332 GKRVLLYTGG--VKS---WSVVSALQDLGMKVVATGTKKSTEEDKARIRELM------GDDVKMLD---------EG--- 388 (483)
T ss_dssp TCEEEEECSS--SCH---HHHHHHHHHHTCEEEEECBSSSCHHHHHHHHHHS------CSSCCBCC---------SC---
T ss_pred CCEEEEECCC--chH---HHHHHHHHHCCCEEEEEecCCCCHHHHHHHHHhc------CCCCEEEe---------CC---
Confidence 5788887654 343 466677777899999887764322 222221 00000000 00
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
-...+.+++++. +||++|... ....+|+++|||++.+
T Consensus 389 ---------d~~el~~~i~~~--~pDL~ig~~---~~~~~a~k~gIP~~~~ 425 (483)
T 3pdi_A 389 ---------NARVLLKTVDEY--QADILIAGG---RNMYTALKGRVPFLDI 425 (483)
T ss_dssp ---------SHHHHHHHHHHT--TCSEEECCG---GGHHHHHHTTCCBCCC
T ss_pred ---------CHHHHHHHHHhc--CCCEEEECC---chhHHHHHcCCCEEEe
Confidence 013445667778 999999974 3678899999999764
No 101
>1kjn_A MTH0777; hypotethical protein, structural genomics, PSI, protein structure initiative; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.115.1.1
Probab=70.42 E-value=3.9 Score=32.61 Aligned_cols=51 Identities=25% Similarity=0.259 Sum_probs=34.9
Q ss_pred CCCC-ccEEE-EEcCCCC-CChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 1 MLPA-GAHIL-VYPFPTS-GHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 1 ~~~~-~~~Il-~~~~~~~-GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
|..+ .+|+| ++-.|-. -.+--.+-++..|.++||+|++++++.....++.+
T Consensus 1 ~~~~~~m~~LilLGCPE~Pvq~p~~lYl~~~Lk~~G~~v~VA~npAAlkLleva 54 (157)
T 1kjn_A 1 MKTESTGKALMVLGCPESPVQIPLAIYTSHKLKKKGFRVTVTANPAALRLVQVA 54 (157)
T ss_dssp -----CCEEEEECCCSCSTTHHHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHH
T ss_pred CccccceeeeEEecCCCCcchhhHHHHHHHHHHhcCCeeEEecCHHHHhheecc
Confidence 4444 45665 4445554 55555788999999999999999999776666654
No 102
>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A*
Probab=69.88 E-value=37 Score=32.54 Aligned_cols=90 Identities=17% Similarity=0.038 Sum_probs=52.0
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 2 LPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.+.++||+++-. | .-...+++++.++|++|..+............ -.+...+.. +
T Consensus 16 ~~~~~~ili~g~---g--~~g~~~~~a~~~~G~~v~~v~~~~~~~~~~~a--------d~~~~~~~~--------d---- 70 (433)
T 2dwc_A 16 TDSAQKILLLGS---G--ELGKEIAIEAQRLGVEVVAVDRYANAPAMQVA--------HRSYVGNMM--------D---- 70 (433)
T ss_dssp STTCCEEEEESC---S--HHHHHHHHHHHHTTCEEEEEESSTTCHHHHHS--------SEEEESCTT--------C----
T ss_pred CCCCCEEEEECC---C--HHHHHHHHHHHHCCCEEEEEECCCCChhhhhc--------ceEEECCCC--------C----
Confidence 344679998844 3 24567889999999999988875443222111 122223310 0
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCC
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLP 127 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP 127 (473)
.+.+.+++++. ++|+|+...-.. ..+..++.+|++
T Consensus 71 ---------~~~l~~~~~~~--~~d~V~~~~e~~~~~~~~~l~~~gi~ 107 (433)
T 2dwc_A 71 ---------KDFLWSVVERE--KPDAIIPEIEAINLDALFEFEKDGYF 107 (433)
T ss_dssp ---------HHHHHHHHHHH--CCSEEEECSSCSCHHHHHHHHHTTCC
T ss_pred ---------HHHHHHHHHHc--CCCEEEECcccCCHHHHHHHHhcCCe
Confidence 02344455556 899999755433 234456778884
No 103
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=69.86 E-value=51 Score=28.19 Aligned_cols=103 Identities=14% Similarity=0.091 Sum_probs=61.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhh----hhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPL----LDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~----i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
+||+++..+.. + -+.+|.+.+.+. +|+|..+.+...... .++. ++.+..++.. .+..
T Consensus 1 ~ri~vl~Sg~g-s--nl~ali~~~~~~~~~~~i~~Vis~~~~~~~~~~A~~~-------gIp~~~~~~~---~~~~---- 63 (212)
T 1jkx_A 1 MNIVVLISGNG-S--NLQAIIDACKTNKIKGTVRAVFSNKADAFGLERARQA-------GIATHTLIAS---AFDS---- 63 (212)
T ss_dssp CEEEEEESSCC-H--HHHHHHHHHHTTSSSSEEEEEEESCTTCHHHHHHHHT-------TCEEEECCGG---GCSS----
T ss_pred CEEEEEEECCc-H--HHHHHHHHHHcCCCCceEEEEEeCCCchHHHHHHHHc-------CCcEEEeCcc---cccc----
Confidence 37766655433 2 477888888775 689877766532222 2222 6766654311 1110
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
++...+.+.+.+++. +||++|+-.+.. ....+-..+.-.++-++++
T Consensus 64 -------r~~~~~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 110 (212)
T 1jkx_A 64 -------REAYDRELIHEIDMY--APDVVVLAGFMRILSPAFVSHYAGRLLNIHPS 110 (212)
T ss_dssp -------HHHHHHHHHHHHGGG--CCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred -------hhhccHHHHHHHHhc--CCCEEEEeChhhhCCHHHHhhccCCEEEEccC
Confidence 113446677889999 999999876643 4445555666667777665
No 104
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Probab=69.46 E-value=49 Score=30.95 Aligned_cols=37 Identities=19% Similarity=0.152 Sum_probs=26.4
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..|++|++.- +.|-+ -..|+++|.++||+|+.+....
T Consensus 27 ~~~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~~ 63 (379)
T 2c5a_A 27 SENLKISITG--AGGFI--ASHIARRLKHEGHYVIASDWKK 63 (379)
T ss_dssp TSCCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESSC
T ss_pred ccCCeEEEEC--CccHH--HHHHHHHHHHCCCeEEEEECCC
Confidence 3477877653 44433 3578899999999999988653
No 105
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=69.23 E-value=6.9 Score=31.04 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred CCCCccEEEEE-cCCCCCChHHH--HHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 1 MLPAGAHILVY-PFPTSGHIIPL--LDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 1 ~~~~~~~Il~~-~~~~~GH~~p~--l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
|+..|+|++++ ..+-+|+.... +.+|..+...||+|.++-..+-...
T Consensus 1 ~~~~Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a~~~~v~Vff~~DGV~~ 50 (136)
T 2hy5_B 1 MSEVVKKFMYLNRKAPYGTIYAWEALEVVLIGAAFDQDVCVLFLDDGVYQ 50 (136)
T ss_dssp ----CCEEEEEECSCTTTSSHHHHHHHHHHHHGGGCCEEEEEECGGGGGG
T ss_pred CccchhEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEEhHHHHH
Confidence 66678888744 45556776654 6669999999999999888754433
No 106
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=69.02 E-value=17 Score=35.85 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC-hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN-LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
++||+++..+. | ..++++.|.+-|-+|..++++.. .+..+.... ....+... +.. ..
T Consensus 348 GKrv~i~g~~~--~---~~~la~~L~ElGm~vv~~gt~~~~~~d~~~l~~-~~~~~~~i--~~~---------~d----- 405 (492)
T 3u7q_A 348 GKRVMLYIGGL--R---PRHVIGAYEDLGMEVVGTGYEFAHNDDYDRTMK-EMGDSTLL--YDD---------VT----- 405 (492)
T ss_dssp TCEEEECBSSS--H---HHHTHHHHHTTTCEEEEEEESSCCHHHHHHHHT-TSCTTCEE--EES---------CB-----
T ss_pred CCEEEEECCCc--h---HHHHHHHHHHCCCEEEEEeCCCCCHHHHHHHHH-hCCCCcEE--EcC---------CC-----
Confidence 57888754432 3 56677888888999999877642 222222211 00011111 110 00
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
...+.+++++. +||++|... ....+|+++|||++.+
T Consensus 406 -------~~el~~~i~~~--~pDL~ig~~---~~~~ia~k~gIP~~~~ 441 (492)
T 3u7q_A 406 -------GYEFEEFVKRI--KPDLIGSGI---KEKFIFQKMGIPFREM 441 (492)
T ss_dssp -------HHHHHHHHHHH--CCSEEEECH---HHHHHHHHTTCCEEES
T ss_pred -------HHHHHHHHHhc--CCcEEEeCc---chhHHHHHcCCCEEec
Confidence 12355667777 999999974 4678999999999864
No 107
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=66.88 E-value=7.1 Score=33.33 Aligned_cols=48 Identities=25% Similarity=0.177 Sum_probs=36.6
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
|.=.++||++...++.+=+.=...+.++|.++|++|.++.++.....+
T Consensus 3 m~l~~k~I~lgiTGs~aa~~k~~~ll~~L~~~g~eV~vv~T~~A~~~i 50 (201)
T 3lqk_A 3 MNFAGKHVGFGLTGSHCTYHEVLPQMERLVELGAKVTPFVTHTVQTTD 50 (201)
T ss_dssp CCCTTCEEEEECCSCGGGGGGTHHHHHHHHHTTCEEEEECSSCSCCTT
T ss_pred CCcCCCEEEEEEEChHHHHHHHHHHHHHHhhCCCEEEEEEChhHHHHH
Confidence 333468998888877444437899999999999999999998654443
No 108
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=66.17 E-value=28 Score=31.88 Aligned_cols=37 Identities=24% Similarity=0.240 Sum_probs=25.3
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 2 LPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|..+++|++.- +.|-+ -..|+++|.++||+|+.+...
T Consensus 2 M~~~~~vlVTG--atG~i--G~~l~~~L~~~G~~V~~~~r~ 38 (341)
T 3enk_A 2 MSTKGTILVTG--GAGYI--GSHTAVELLAHGYDVVIADNL 38 (341)
T ss_dssp CCSSCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEECCC
T ss_pred CCCCcEEEEec--CCcHH--HHHHHHHHHHCCCcEEEEecC
Confidence 44556666543 33433 257899999999999988753
No 109
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=66.08 E-value=46 Score=30.55 Aligned_cols=100 Identities=11% Similarity=-0.008 Sum_probs=54.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh----------hhhhccCCCCCCeeEEEcCCCCCCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL----------LDSLNANHPSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----------i~~~~~~~~~~~~~f~~l~~~~~~~~~ 74 (473)
.+||+|+-.+. ...+..++|.++||+|..+.+...... +..... ..++.+.. + ..+.
T Consensus 7 ~mrivf~Gt~~-----fa~~~L~~L~~~~~~v~~Vvt~pd~p~grg~~~~~~~v~~~A~---~~gIpv~~-~----~~~~ 73 (318)
T 3q0i_A 7 SLRIVFAGTPD-----FAARHLAALLSSEHEIIAVYTQPERPAGRGKKLTASPVKTLAL---EHNVPVYQ-P----ENFK 73 (318)
T ss_dssp CCEEEEECCSH-----HHHHHHHHHHTSSSEEEEEECCCC---------CCCHHHHHHH---HTTCCEEC-C----SCSC
T ss_pred CCEEEEEecCH-----HHHHHHHHHHHCCCcEEEEEcCCCCcccccccCCCCHHHHHHH---HcCCCEEc-c----CcCC
Confidence 36899886653 334567888889999988877533221 111000 01344321 1 1111
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.+.+.+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 74 ----------------~~~~~~~l~~~--~~Dliv~~~y~~ilp~~~l~~~~~g~iNiHpSl 117 (318)
T 3q0i_A 74 ----------------SDESKQQLAAL--NADLMVVVAYGLLLPKVVLDTPKLGCINVHGSI 117 (318)
T ss_dssp ----------------SHHHHHHHHTT--CCSEEEESSCCSCCCHHHHTSSTTCEEEEESSS
T ss_pred ----------------CHHHHHHHHhc--CCCEEEEeCccccCCHHHHhhCcCCEEEeCCcc
Confidence 13456778888 999999876533 33334333344466766654
No 110
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}
Probab=65.85 E-value=49 Score=30.03 Aligned_cols=34 Identities=26% Similarity=0.274 Sum_probs=23.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++|++.- +.|-+ -..|+++|.++||+|+.+...
T Consensus 1 M~~ilVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 34 (330)
T 2c20_A 1 MNSILICG--GAGYI--GSHAVKKLVDEGLSVVVVDNL 34 (330)
T ss_dssp -CEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEC--CCcHH--HHHHHHHHHhCCCEEEEEeCC
Confidence 56776653 33433 367899999999999998754
No 111
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=65.74 E-value=71 Score=28.17 Aligned_cols=32 Identities=22% Similarity=0.174 Sum_probs=24.4
Q ss_pred CCcEEE-eCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 104 PPVAIL-SDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV-~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.||+|| +|+..- -++.=|.++|||+|.++-+.
T Consensus 158 ~Pdll~V~Dp~~e~~Ai~EA~~l~IPvIaivDTn 191 (256)
T 2vqe_B 158 LPDAIFVVDPTKEAIAVREARKLFIPVIALADTD 191 (256)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCCEECCCTT
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 789888 455433 57788999999999986653
No 112
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1fp4_B* 1g21_B* 1g20_B* 1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B* 2afk_B* 2min_B* 3k1a_B* 3min_B*
Probab=63.71 E-value=24 Score=35.03 Aligned_cols=94 Identities=14% Similarity=0.181 Sum_probs=55.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh----hhhhhccC-CCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP----LLDSLNAN-HPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----~i~~~~~~-~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
++||+++ |.-.-..++++.|.+-|.+|+.+.+..... .++..... ..+.+.... .. .
T Consensus 364 GKrvaI~-----gd~~~~~~la~fL~elGm~vv~v~~~~~~~~~~~~~~~~l~~~~~~~~~~v~--~~---------~-- 425 (523)
T 3u7q_B 364 GKRFALW-----GDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVY--IG---------K-- 425 (523)
T ss_dssp TCEEEEE-----CSHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEE--ES---------C--
T ss_pred CCEEEEE-----CCchHHHHHHHHHHHcCCEEEEEEeCCCCHHHHHHHHHHHhhccCCCCcEEE--EC---------C--
Confidence 5778776 233456778888888999999887664322 22222110 000001111 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHh-------CCCcEEE
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAEL-------GLPRVVF 131 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~-------giP~v~~ 131 (473)
-...+.+++++. +||++|.... +..+|+++ |||++.+
T Consensus 426 ----------D~~~l~~~i~~~--~pDLlig~s~---~k~~a~~~~~~~~~~giP~iri 469 (523)
T 3u7q_B 426 ----------DLWHLRSLVFTD--KPDFMIGNSY---GKFIQRDTLHKGKEFEVPLIRI 469 (523)
T ss_dssp ----------CHHHHHHHHHHT--CCSEEEECTT---HHHHHHHHHHHCGGGCCCEEEC
T ss_pred ----------CHHHHHHHHHhc--CCCEEEECcc---HHHHHHHhhcccccCCCceEEe
Confidence 013445667778 9999999965 55677777 9999874
No 113
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=62.34 E-value=5.9 Score=33.23 Aligned_cols=44 Identities=11% Similarity=0.113 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
|+||++...++.|=+ =...+.++|.++|++|.++.++...+.+.
T Consensus 2 ~k~IllgvTGs~aa~-k~~~l~~~L~~~g~~V~vv~T~~A~~fi~ 45 (181)
T 1g63_A 2 YGKLLICATASINVI-NINHYIVELKQHFDEVNILFSPSSKNFIN 45 (181)
T ss_dssp CCCEEEEECSCGGGG-GHHHHHHHHTTTSSCEEEEECGGGGGTSC
T ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHCCCEEEEEEchhHHHHHH
Confidence 467888887777666 57899999999999999999986655443
No 114
>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}
Probab=62.22 E-value=54 Score=30.66 Aligned_cols=35 Identities=17% Similarity=-0.073 Sum_probs=26.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|+||+++..+ .....++++|.+.||+|.++.+...
T Consensus 1 M~~Ililg~g-----~~g~~~~~a~~~~G~~v~~~~~~~~ 35 (380)
T 3ax6_A 1 MKKIGIIGGG-----QLGKMMTLEAKKMGFYVIVLDPTPR 35 (380)
T ss_dssp CCEEEEECCS-----HHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6789888753 2456788889999999998887543
No 115
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=62.08 E-value=32 Score=29.55 Aligned_cols=104 Identities=14% Similarity=0.118 Sum_probs=59.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChh---hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLP---LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~---~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
|+||+++..+. || -+.+|.+++.+ .+++|..+.+..... +.++. ++.+..++.. ....
T Consensus 12 ~~ri~vl~SG~-gs--nl~all~~~~~~~~~eI~~Vis~~~a~~~~~A~~~-------gIp~~~~~~~---~~~~----- 73 (215)
T 3da8_A 12 PARLVVLASGT-GS--LLRSLLDAAVGDYPARVVAVGVDRECRAAEIAAEA-------SVPVFTVRLA---DHPS----- 73 (215)
T ss_dssp SEEEEEEESSC-CH--HHHHHHHHSSTTCSEEEEEEEESSCCHHHHHHHHT-------TCCEEECCGG---GSSS-----
T ss_pred CcEEEEEEeCC-hH--HHHHHHHHHhccCCCeEEEEEeCCchHHHHHHHHc-------CCCEEEeCcc---cccc-----
Confidence 67998776654 44 34555555543 356888777654422 22232 5666654311 0010
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
++...+.+.+.+++. +||++|+-.+.. ....+-..+.-.++-++++
T Consensus 74 ------r~~~d~~~~~~l~~~--~~Dlivlagy~~iL~~~~l~~~~~~~iNiHpS 120 (215)
T 3da8_A 74 ------RDAWDVAITAATAAH--EPDLVVSAGFMRILGPQFLSRFYGRTLNTHPA 120 (215)
T ss_dssp ------HHHHHHHHHHHHHTT--CCSEEEEEECCSCCCHHHHHHHTTTEEEEESS
T ss_pred ------hhhhhHHHHHHHHhh--CCCEEEEcCchhhCCHHHHhhccCCeEEeCcc
Confidence 113356778889999 999999865533 3444445555556666555
No 116
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=61.88 E-value=54 Score=27.98 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=58.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhh----hhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPL----LDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~----i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
+||+++..+.. + .+.+|.+.+.+. +|+|..+.+...... .++. ++.+..++.. .+..
T Consensus 1 ~riaVl~SG~G-s--~L~aLi~~~~~~~~~~~I~~Vvs~~~~~~~~~~A~~~-------gIp~~~~~~~---~~~~---- 63 (209)
T 1meo_A 1 ARVAVLISGTG-S--NLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERA-------GIPTRVINHK---LYKN---- 63 (209)
T ss_dssp CEEEEEESSSC-T--THHHHHHHHHSTTCSCEEEEEEESSTTCHHHHHHHHT-------TCCEEECCGG---GSSS----
T ss_pred CeEEEEEECCc-h--HHHHHHHHHhcCCCCcEEEEEEeCCCChHHHHHHHHc-------CCCEEEECcc---ccCc----
Confidence 37766555333 2 355666666654 799988776543222 2222 5666544321 0110
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
+....+.+.+.+++. +||+||+-.+.. ....+-..+.-.++-++++
T Consensus 64 -------r~~~~~~~~~~l~~~--~~Dliv~a~y~~il~~~~l~~~~~~~iNiHpS 110 (209)
T 1meo_A 64 -------RVEFDSAIDLVLEEF--SIDIVCLAGFMRILSGPFVQKWNGKMLNIHPS 110 (209)
T ss_dssp -------HHHHHHHHHHHHHHT--TCCEEEEESCCSCCCHHHHHHTTTSEEEEESS
T ss_pred -------hhhhhHHHHHHHHhc--CCCEEEEcchhhhCCHHHHhhhcCCEEEEccC
Confidence 113345667788889 999999776533 3444555566666777665
No 117
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=61.85 E-value=6.4 Score=30.57 Aligned_cols=36 Identities=17% Similarity=0.053 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH---hCCCcEEEe
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE---LGLPRVVFS 132 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~---~giP~v~~~ 132 (473)
.+.+++. +||+||.|...+ .|..+++. .++|+|.++
T Consensus 46 l~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lT 86 (123)
T 2lpm_A 46 LDIARKG--QFDIAIIDVNLDGEPSYPVADILAERNVPFIFAT 86 (123)
T ss_dssp HHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBC
T ss_pred HHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEe
Confidence 3456667 899999999977 45555544 489977654
No 118
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=61.62 E-value=9.8 Score=30.13 Aligned_cols=42 Identities=17% Similarity=0.122 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
.||++.+.++-+|-....-++..|..+|++|+++......+.
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~ 45 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQEL 45 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHH
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 589999999999999999999999999999998887544333
No 119
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=61.59 E-value=4.4 Score=34.44 Aligned_cols=43 Identities=9% Similarity=0.079 Sum_probs=34.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
++||++...++.|=+. ...+.+.|.++|++|.++.++...+.+
T Consensus 8 ~k~IllgvTGs~aa~k-~~~l~~~L~~~g~~V~vv~T~~A~~fi 50 (194)
T 1p3y_1 8 DKKLLIGICGSISSVG-ISSYLLYFKSFFKEIRVVMTKTAEDLI 50 (194)
T ss_dssp GCEEEEEECSCGGGGG-THHHHHHHTTTSSEEEEEECHHHHHHS
T ss_pred CCEEEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEEchhHHHHH
Confidence 3789888888877775 689999999999999999998554443
No 120
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=61.03 E-value=33 Score=31.46 Aligned_cols=99 Identities=11% Similarity=0.026 Sum_probs=55.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh----------hhhhccCCCCCCeeEEEcCCCCCCCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL----------LDSLNANHPSTSLQSLVLPQPKWPAGSP 75 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----------i~~~~~~~~~~~~~f~~l~~~~~~~~~~ 75 (473)
+||+|+-.|..+ .+..++|.+.||+|..+.+.+.... +++... ..++.+.. + ..+.
T Consensus 3 mrivf~Gtp~fa-----~~~L~~L~~~~~~v~~Vvt~pd~~~grg~~l~~~~v~~~A~---~~gIpv~~-~----~~~~- 68 (314)
T 3tqq_A 3 LKIVFAGTPQFA-----VPTLRALIDSSHRVLAVYTQPDRPSGRGQKIMESPVKEIAR---QNEIPIIQ-P----FSLR- 68 (314)
T ss_dssp CEEEEEECSGGG-----HHHHHHHHHSSSEEEEEECCCC----------CCHHHHHHH---HTTCCEEC-C----SCSS-
T ss_pred cEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCCCccccCCccCCCHHHHHHH---HcCCCEEC-c----ccCC-
Confidence 689998877554 3456888889999988887543221 000000 01343321 1 0110
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.+.+.+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 69 ---------------~~~~~~~l~~~--~~Dliv~~~~~~ilp~~il~~~~~g~iNiHpSl 112 (314)
T 3tqq_A 69 ---------------DEVEQEKLIAM--NADVMVVVAYGLILPKKALNAFRLGCVNVHASL 112 (314)
T ss_dssp ---------------SHHHHHHHHTT--CCSEEEEESCCSCCCHHHHTSSTTCEEEEESSC
T ss_pred ---------------CHHHHHHHHhc--CCCEEEEcCcccccCHHHHhhCcCCEEEecCcc
Confidence 13456778888 999999876533 33344443444467766664
No 121
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=60.70 E-value=6.3 Score=33.53 Aligned_cols=43 Identities=9% Similarity=0.168 Sum_probs=35.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLD 49 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~ 49 (473)
+||++...++.|-+. ...+.+.|.++ |++|.++.++.....+.
T Consensus 1 ~~IllgvTGsiaa~k-~~~ll~~L~~~~g~~V~vv~T~~A~~fi~ 44 (197)
T 1sbz_A 1 MKLIVGMTGATGAPL-GVALLQALREMPNVETHLVMSKWAKTTIE 44 (197)
T ss_dssp CEEEEEECSSSCHHH-HHHHHHHHHTCTTCEEEEEECHHHHHHHH
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHhccCCEEEEEECchHHHHhH
Confidence 488888888877766 89999999999 99999999986655554
No 122
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=60.47 E-value=9.4 Score=32.72 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=32.3
Q ss_pred CCCCccEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 1 MLPAGAHILVYPFPTSGHIIP-LLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
|+=.++||++...++. ...- ...+.+.|.++|++|.++.++...
T Consensus 1 m~l~~k~IllgiTGsi-aayk~~~~ll~~L~~~g~eV~vv~T~~A~ 45 (207)
T 3mcu_A 1 MSLKGKRIGFGFTGSH-CTYEEVMPHLEKLIAEGAEVRPVVSYTVQ 45 (207)
T ss_dssp -CCTTCEEEEEECSCG-GGGTTSHHHHHHHHHTTCEEEEEECC---
T ss_pred CCCCCCEEEEEEEChH-HHHHHHHHHHHHHHhCCCEEEEEEehHHH
Confidence 4445689988777764 4444 789999999999999999998654
No 123
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=59.90 E-value=42 Score=28.85 Aligned_cols=101 Identities=13% Similarity=0.140 Sum_probs=60.3
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC-C-h--hhhhhhccCCCCCCeeEEEcCCCCCCCCCCh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN-N-L--PLLDSLNANHPSTSLQSLVLPQPKWPAGSPA 76 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~-~-~--~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~ 76 (473)
..++||+++..+. ||. +.+|.+++.+. +++|..+.+.. . . ++.++. ++.+..++.. .+.
T Consensus 6 ~~~~ri~vl~SG~-gsn--l~all~~~~~~~~~~~I~~Vis~~~~a~~l~~A~~~-------gIp~~~~~~~---~~~-- 70 (215)
T 3kcq_A 6 KKELRVGVLISGR-GSN--LEALAKAFSTEESSVVISCVISNNAEARGLLIAQSY-------GIPTFVVKRK---PLD-- 70 (215)
T ss_dssp -CCEEEEEEESSC-CHH--HHHHHHHTCCC-CSEEEEEEEESCTTCTHHHHHHHT-------TCCEEECCBT---TBC--
T ss_pred CCCCEEEEEEECC-cHH--HHHHHHHHHcCCCCcEEEEEEeCCcchHHHHHHHHc-------CCCEEEeCcc---cCC--
Confidence 3467887766543 443 56677777654 37888877642 2 1 123333 5666655421 010
Q ss_pred hhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 77 TRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.+.+.+.+++. +||+||+-.+.. ....+-..+.-.++-++++
T Consensus 71 --------------~~~~~~~L~~~--~~Dlivlagy~~IL~~~~l~~~~~~~iNiHpS 113 (215)
T 3kcq_A 71 --------------IEHISTVLREH--DVDLVCLAGFMSILPEKFVTDWHHKIINIHPS 113 (215)
T ss_dssp --------------HHHHHHHHHHT--TCSEEEESSCCSCCCHHHHHHTTTSEEEEESS
T ss_pred --------------hHHHHHHHHHh--CCCEEEEeCCceEeCHHHHhhccCCeEEECcc
Confidence 15667788889 999999877644 4445555566666776665
No 124
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=59.74 E-value=7.6 Score=31.07 Aligned_cols=96 Identities=9% Similarity=0.108 Sum_probs=58.0
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHH
Q 042753 9 LVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRE 88 (473)
Q Consensus 9 l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (473)
+|++... .+=.-++.+|+.|.+.|+++ +++......++.. ++....+....+.+- .
T Consensus 27 vliSv~d-~dK~~l~~~a~~l~~lGf~i--~AT~GTa~~L~~~-------Gi~v~~v~k~~egg~-------------~- 82 (143)
T 2yvq_A 27 ILIGIQQ-SFRPRFLGVAEQLHNEGFKL--FATEATSDWLNAN-------NVPATPVAWPSQEGQ-------------N- 82 (143)
T ss_dssp EEEECCG-GGHHHHHHHHHHHHTTTCEE--EEEHHHHHHHHHT-------TCCCEEECCGGGC-----------------
T ss_pred EEEEecc-cchHHHHHHHHHHHHCCCEE--EECchHHHHHHHc-------CCeEEEEEeccCCCc-------------c-
Confidence 4444432 34566889999999999974 3444445566655 454444432111000 0
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCc--------chHHHHHHHhCCCcEE
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFL--------GWTQGLAAELGLPRVV 130 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~--------~~~~~~A~~~giP~v~ 130 (473)
...+.+.+.+++. +.|+||.-..- +.....|-.++||+++
T Consensus 83 ~~~~~i~d~i~~g--~i~lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T 130 (143)
T 2yvq_A 83 PSLSSIRKLIRDG--SIDLVINLPNNNTKFVHDNYVIRRTAVDSGIPLLT 130 (143)
T ss_dssp --CBCHHHHHHTT--SCCEEEECCCCCGGGHHHHHHHHHHHHHTTCCEEC
T ss_pred cccccHHHHHHCC--CceEEEECCCCCCcCCccHHHHHHHHHHhCCCeEc
Confidence 0014577888888 99999986543 1234678889999876
No 125
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=59.72 E-value=13 Score=31.89 Aligned_cols=44 Identities=16% Similarity=-0.064 Sum_probs=38.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
..+|++.+.++-.|-....-++..|..+|++|.++......+.+
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l 131 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKF 131 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 46899999999999999999999999999999999886544443
No 126
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=59.08 E-value=59 Score=28.04 Aligned_cols=39 Identities=18% Similarity=0.161 Sum_probs=32.6
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFP-TSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
..|.++..+ +.|=..-++.++..+..+|..|.++.+...
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 456666655 999999999999999999999999876643
No 127
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=58.36 E-value=22 Score=32.56 Aligned_cols=32 Identities=13% Similarity=0.079 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-C-CeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-G-LNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-G-h~Vt~~~~~~ 43 (473)
+||+++..+.. .++++.|.+. | ++|..+....
T Consensus 5 ~~Ili~g~g~~------~~l~~~l~~~~~~~~v~~~d~~~ 38 (331)
T 2pn1_A 5 PHLLITSAGRR------AKLVEYFVKEFKTGRVSTADCSP 38 (331)
T ss_dssp CEEEEESCTTC------HHHHHHHHHHCCSSEEEEEESCT
T ss_pred ceEEEecCCch------HHHHHHHHHhcCCCEEEEEeCCC
Confidence 68998865544 4789999886 7 8888876653
No 128
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=58.28 E-value=16 Score=32.56 Aligned_cols=43 Identities=19% Similarity=-0.046 Sum_probs=37.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
..+|++.+.++-.|-....-++..|..+|++|++++.....+.
T Consensus 123 ~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~ 165 (258)
T 2i2x_B 123 KGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEE 165 (258)
T ss_dssp SCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHH
T ss_pred CCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 5789999999999999999999999999999999986543333
No 129
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=57.60 E-value=38 Score=31.51 Aligned_cols=100 Identities=9% Similarity=0.037 Sum_probs=59.9
Q ss_pred cEEEEEcCCCCC--C--hHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFPTSG--H--IIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~~~G--H--~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.-|++.|..+.. . ..-+..|++.|.++|++|.+++.+...+.+++..... .-....+. ...
T Consensus 186 ~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~---~~~~~~l~--------g~~---- 250 (349)
T 3tov_A 186 ILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQM---ETKPIVAT--------GKF---- 250 (349)
T ss_dssp CEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTC---SSCCEECT--------TCC----
T ss_pred CEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhc---ccccEEee--------CCC----
Confidence 345676665432 1 2358999999999999999987776655544432110 00111111 011
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
-..++..+++ .-|++|+.- ++...+|..+|+|+|.++..
T Consensus 251 --------sl~e~~ali~----~a~~~i~~D--sG~~HlAaa~g~P~v~lfg~ 289 (349)
T 3tov_A 251 --------QLGPLAAAMN----RCNLLITND--SGPMHVGISQGVPIVALYGP 289 (349)
T ss_dssp --------CHHHHHHHHH----TCSEEEEES--SHHHHHHHTTTCCEEEECSS
T ss_pred --------CHHHHHHHHH----hCCEEEECC--CCHHHHHHhcCCCEEEEECC
Confidence 1123455565 449999742 45678899999999998643
No 130
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=57.13 E-value=12 Score=29.47 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~~ 136 (473)
+.+++. .||+||.|...+ .|..+++.+ ++|+|.++....
T Consensus 51 ~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipvI~lTa~~~ 98 (134)
T 3to5_A 51 PMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAK 98 (134)
T ss_dssp HHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCEEEEESSCC
T ss_pred HHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeEEEEECCCC
Confidence 345556 899999999988 577777655 589888776543
No 131
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=56.98 E-value=73 Score=29.14 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=57.3
Q ss_pred cEEEEEcCCCCC---Ch--HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCC--CeeEEEcCCCCCCCCCChhh
Q 042753 6 AHILVYPFPTSG---HI--IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPST--SLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 6 ~~Il~~~~~~~G---H~--~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~--~~~f~~l~~~~~~~~~~~~~ 78 (473)
..|++.|....+ .+ .-+..+++.|.++|++|.++..+...+..+..... ... ......+.. ..
T Consensus 181 ~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~-~~~~~~~~~~~l~g--------~~- 250 (348)
T 1psw_A 181 PMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAA-LNTEQQAWCRNLAG--------ET- 250 (348)
T ss_dssp CEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTT-SCHHHHTTEEECTT--------TS-
T ss_pred cEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHh-hhhccccceEeccC--------cC-
Confidence 345666654222 22 36889999999999999888766544333332110 000 001222210 01
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
-..++..+++. -|++|+.- +....+|..+|+|+|.++..
T Consensus 251 -----------sl~e~~ali~~----a~l~I~~D--sg~~HlAaa~g~P~v~lfg~ 289 (348)
T 1psw_A 251 -----------QLDQAVILIAA----CKAIVTND--SGLMHVAAALNRPLVALYGP 289 (348)
T ss_dssp -----------CHHHHHHHHHT----SSEEEEES--SHHHHHHHHTTCCEEEEESS
T ss_pred -----------CHHHHHHHHHh----CCEEEecC--CHHHHHHHHcCCCEEEEECC
Confidence 11334456664 49999753 45677788999999998543
No 132
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=56.93 E-value=11 Score=30.84 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=37.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 47 (473)
..||++.+.++-+|-....-++..|..+|++|++.......+.
T Consensus 18 ~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~ 60 (161)
T 2yxb_A 18 RYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQ 60 (161)
T ss_dssp SCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHH
T ss_pred CCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHH
Confidence 5789999999999999999999999999999999987544333
No 133
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=56.72 E-value=38 Score=30.32 Aligned_cols=151 Identities=9% Similarity=-0.055 Sum_probs=78.5
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhh------------------
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRV------------------ 332 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~------------------ 332 (473)
.++.++.|..|.... ..+..|.+.+.++.++-+... +.+...+.+..
T Consensus 12 ~~k~VLVVGgG~va~-------rka~~Ll~~Ga~VtViap~~~--------~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 76 (274)
T 1kyq_A 12 KDKRILLIGGGEVGL-------TRLYKLMPTGCKLTLVSPDLH--------KSIIPKFGKFIQNKDQPDYREDAKRFINP 76 (274)
T ss_dssp TTCEEEEEEESHHHH-------HHHHHHGGGTCEEEEEEEEEC--------TTHHHHHCGGGC-----------CEEECT
T ss_pred CCCEEEEECCcHHHH-------HHHHHHHhCCCEEEEEcCCCC--------cchhHHHHHHHhccccccccchhhccccc
Confidence 468889998888752 356677788888877765431 11101111110
Q ss_pred ----cCCCe-EeecCccHHHhhh------ccCccceeeccCchhHHHHHh-----h---CCeEecCcccccchhhHH---
Q 042753 333 ----AGRGY-VIRGWSQQVAILR------HKAVGAFLTHCGWNSVLEGVS-----A---GVVMLTWPMDADQYTNAQ--- 390 (473)
Q Consensus 333 ----~~~nv-~v~~~~pq~~lL~------~~~v~~~ItHgG~~s~~eal~-----~---GvP~l~~P~~~DQ~~na~--- 390 (473)
...++ .+..---+...|. .+++ +|.--|...+.+.++ . |+|+-++ |.+..+.
T Consensus 77 ~~~~~~g~i~~~i~~~~~~~dL~~l~~~~~adl--Viaat~d~~~n~~I~~~Ar~~f~~~i~VNvv----d~pel~~f~~ 150 (274)
T 1kyq_A 77 NWDPTKNEIYEYIRSDFKDEYLDLENENDAWYI--IMTCIPDHPESARIYHLCKERFGKQQLVNVA----DKPDLCDFYF 150 (274)
T ss_dssp TCCTTSCCCSEEECSSCCGGGGCCSSTTCCEEE--EEECCSCHHHHHHHHHHHHHHHCTTSEEEET----TCGGGBSEEC
T ss_pred ccccccCCeeEEEcCCCCHHHHhhcccCCCeEE--EEEcCCChHHHHHHHHHHHHhcCCCcEEEEC----CCcccCeeEe
Confidence 11222 1111111223344 4554 777777665555443 3 6666222 3333333
Q ss_pred --HHHHHhc-ceEEeccCCCCCCCHHHHHHHHHHHh---C-Cc-HHHHHHHHHHHHHHHHH
Q 042753 391 --LLVDQLG-VGIRVGEGTRNIPESDELARLLAQSV---D-GP-RRERLKARELSGAALSA 443 (473)
Q Consensus 391 --rv~~~~G-~G~~l~~~~~~~~~~~~l~~~i~~~l---~-~~-~~~~~~a~~~~~~~~~~ 443 (473)
.+.+. + +-+.+..+.....-+..|++.|.+.+ . .+ ..+-+.+.++++.+++.
T Consensus 151 Pa~~~~g-~~l~IaIST~Gksp~lA~~ir~~ie~~l~~~p~~~~~~~~~~l~~~R~~ik~~ 210 (274)
T 1kyq_A 151 GANLEIG-DRLQILISTNGLSPRFGALVRDEIRNLFTQMGDLALEDAVVKLGELRRGIRLL 210 (274)
T ss_dssp CEEEEET-TTEEEEEEESSSCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_pred eeEEEeC-CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 22211 2 23333321144455678888998888 5 22 46777777888887754
No 134
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=56.70 E-value=1.1e+02 Score=27.66 Aligned_cols=104 Identities=12% Similarity=0.165 Sum_probs=63.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCC--CChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQ--NNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~--~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
+++||+++..+. || -+.+|..+-.+- +.+|..+.+. ......++. ++.+..+|... ...
T Consensus 104 ~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~I~~Visn~~~~~~~A~~~-------gIp~~~~~~~~----~~r--- 166 (302)
T 3o1l_A 104 QKKRVVLMASRE-SH--CLADLLHRWHSDELDCDIACVISNHQDLRSMVEWH-------DIPYYHVPVDP----KDK--- 166 (302)
T ss_dssp SCCEEEEEECSC-CH--HHHHHHHHHHTTCSCSEEEEEEESSSTTHHHHHTT-------TCCEEECCCCS----SCC---
T ss_pred CCcEEEEEEeCC-ch--hHHHHHHHHHCCCCCcEEEEEEECcHHHHHHHHHc-------CCCEEEcCCCc----CCH---
Confidence 368998776544 65 467777765542 5788877764 233333333 67777665311 000
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
....+.+.+++++. +||+||+-.+.. ....+...+.-.++-++++
T Consensus 167 --------~~~~~~~~~~l~~~--~~DliVlagym~IL~~~~l~~~~~~~INiHpS 212 (302)
T 3o1l_A 167 --------EPAFAEVSRLVGHH--QADVVVLARYMQILPPQLCREYAHQVINIHHS 212 (302)
T ss_dssp --------HHHHHHHHHHHHHT--TCSEEEESSCCSCCCTTHHHHTTTCEEEEESS
T ss_pred --------HHHHHHHHHHHHHh--CCCEEEHhHhhhhcCHHHHhhhhCCeEEeCcc
Confidence 12346677888899 999999876643 4445555565566666555
No 135
>3mjf_A Phosphoribosylamine--glycine ligase; structural genomics, CEN structural genomics of infectious diseases, csgid; HET: MSE PGE; 1.47A {Yersinia pestis} PDB: 1gso_A
Probab=56.27 E-value=14 Score=35.67 Aligned_cols=92 Identities=13% Similarity=0.008 Sum_probs=50.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
.|+|||++-.++. -.+||+.|.+.+.--.+++.+.+.... .. .......++.
T Consensus 2 ~~mkvlviG~ggr-----e~ala~~l~~s~~v~~v~~~pgn~g~~-~~------~~~~~~~~~~---------------- 53 (431)
T 3mjf_A 2 NAMNILIIGNGGR-----EHALGWKAAQSPLADKIYVAPGNAGTA-LE------PTLENVDIAA---------------- 53 (431)
T ss_dssp -CEEEEEEECSHH-----HHHHHHHHTTCTTEEEEEEEECCHHHH-HC------TTCEECCCCT----------------
T ss_pred CCcEEEEECCCHH-----HHHHHHHHHhCCCCCEEEEECCCHHHh-hh------cccceecCCc----------------
Confidence 4899999977754 447899999886532333334442221 11 0112221111
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
.-.+.+.++.++. ++|+||...-.. ......+++|+|++.
T Consensus 54 -----~d~~~l~~~a~~~--~id~vv~g~e~~l~~~~~~~l~~~Gi~~~G 96 (431)
T 3mjf_A 54 -----TDIAGLLAFAQSH--DIGLTIVGPEAPLVIGVVDAFRAAGLAIFG 96 (431)
T ss_dssp -----TCHHHHHHHHHHT--TEEEEEECSHHHHHTTHHHHHHHTTCCEES
T ss_pred -----CCHHHHHHHHHHh--CcCEEEECCchHHHHHHHHHHHhcCCCeeC
Confidence 0013445566777 899999754322 234666778999763
No 136
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=54.87 E-value=18 Score=27.22 Aligned_cols=38 Identities=16% Similarity=0.289 Sum_probs=26.8
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
+.+++. +||+||.|...+ .+..+++++ ++|++.++...
T Consensus 40 ~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 86 (122)
T 3gl9_A 40 EKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKG 86 (122)
T ss_dssp HHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCC
T ss_pred HHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCC
Confidence 345566 899999998866 456666544 58888877654
No 137
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=54.40 E-value=51 Score=28.61 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=23.3
Q ss_pred CCcEEEe-CCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 104 PPVAILS-DFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 104 ~pD~VV~-D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.||+||+ |+..- -++.=|.++|||+|.++-+
T Consensus 157 ~Pdll~v~Dp~~e~~ai~EA~~l~IPvIaivDT 189 (231)
T 3bbn_B 157 LPDIVIIVDQQEEYTALRECITLGIPTICLIDT 189 (231)
T ss_dssp CCSEEEESCTTTTHHHHHHHHTTTCCEEECCCS
T ss_pred CCCEEEEeCCccccHHHHHHHHhCCCEEEEecC
Confidence 5898884 54433 5778899999999998655
No 138
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=54.22 E-value=12 Score=32.00 Aligned_cols=45 Identities=27% Similarity=0.293 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~i~~ 50 (473)
.+||++...++.+=+. ...+.++|.+ +|++|.++.++...+.+..
T Consensus 19 ~k~IllgvTGsiaa~k-~~~lv~~L~~~~g~~V~vv~T~~A~~fi~~ 64 (206)
T 1qzu_A 19 KFHVLVGVTGSVAALK-LPLLVSKLLDIPGLEVAVVTTERAKHFYSP 64 (206)
T ss_dssp SEEEEEEECSSGGGGT-HHHHHHHHC---CEEEEEEECTGGGGSSCG
T ss_pred CCEEEEEEeChHHHHH-HHHHHHHHhcccCCEEEEEECHhHHHHhCH
Confidence 5789888888877554 5899999999 8999999999976655543
No 139
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=54.12 E-value=16 Score=31.36 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
.+||++...++.+-+. ...|.++|.++| +|.++.++...+.+..
T Consensus 19 ~k~IllgvTGsiaa~k-~~~ll~~L~~~g-~V~vv~T~~A~~fv~~ 62 (209)
T 1mvl_A 19 KPRVLLAASGSVAAIK-FGNLCHCFTEWA-EVRAVVTKSSLHFLDK 62 (209)
T ss_dssp CCEEEEEECSSGGGGG-HHHHHHHHHTTS-EEEEEECTGGGGTCCG
T ss_pred CCEEEEEEeCcHHHHH-HHHHHHHHhcCC-CEEEEEcchHHHhcCH
Confidence 4789988888888776 899999999999 9999999976555543
No 140
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=53.99 E-value=86 Score=25.34 Aligned_cols=137 Identities=9% Similarity=0.106 Sum_probs=72.9
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccC
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKA 353 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 353 (473)
+.|-|-+||.+ +....++....|++.+..+-..+-+- .+.|+.+. +|+.+.+ ..-.
T Consensus 3 ~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~sa---------HR~p~~~~-----------~~~~~a~--~~~~ 58 (159)
T 3rg8_A 3 PLVIILMGSSS--DMGHAEKIASELKTFGIEYAIRIGSA---------HKTAEHVV-----------SMLKEYE--ALDR 58 (159)
T ss_dssp CEEEEEESSGG--GHHHHHHHHHHHHHTTCEEEEEECCT---------TTCHHHHH-----------HHHHHHH--TSCS
T ss_pred CeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc---------cCCHHHHH-----------HHHHHhh--hcCC
Confidence 56777778775 67778888999999988765555543 45665432 2221111 1001
Q ss_pred ccceeeccCch----hHHHHHhhCCeEecCccccc---chhhHHHHHH--HhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 354 VGAFLTHCGWN----SVLEGVSAGVVMLTWPMDAD---QYTNAQLLVD--QLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 354 v~~~ItHgG~~----s~~eal~~GvP~l~~P~~~D---Q~~na~rv~~--~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
.+.+|.=.|.- ++.-+ ..-+|+|.+|...- -.+ -.-+.+ . |+.+.-- .+..++.-+...|-. +.
T Consensus 59 ~~ViIa~AG~aa~LpgvvA~-~t~~PVIgVP~~~~~l~G~d-LlS~vqmp~-GvpVatv---~~~~nAa~lA~~Il~-~~ 131 (159)
T 3rg8_A 59 PKLYITIAGRSNALSGFVDG-FVKGATIACPPPSDSFAGAD-IYSSLRMPS-GISPALV---LEPKNAALLAARIFS-LY 131 (159)
T ss_dssp CEEEEEECCSSCCHHHHHHH-HSSSCEEECCCCCCGGGGTH-HHHHHCCCT-TCCCEEC---CSHHHHHHHHHHHHT-TT
T ss_pred CcEEEEECCchhhhHHHHHh-ccCCCEEEeeCCCCCCCCcc-HHHHHhCCC-CCceEEe---cCchHHHHHHHHHHh-CC
Confidence 22377666644 33333 24689999996531 122 111111 2 4443322 233344444433322 24
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 042753 425 GPRRERLKARELSGAALS 442 (473)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~ 442 (473)
|+ .++++.+.++...++
T Consensus 132 d~-~l~~kl~~~r~~~~~ 148 (159)
T 3rg8_A 132 DK-EIADSVKSYMESNAQ 148 (159)
T ss_dssp CH-HHHHHHHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHHH
Confidence 54 888888888877653
No 141
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=53.71 E-value=28 Score=33.72 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=34.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
.|+++-.++.|-..-...||..|.++|+.|.++..+.++.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~ 141 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRP 141 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSST
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 3456667888999999999999999999999999887654
No 142
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=52.99 E-value=29 Score=31.70 Aligned_cols=95 Identities=13% Similarity=0.120 Sum_probs=53.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-----------hhhhhccCCCCCCeeEEEcCCCCCCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-----------LLDSLNANHPSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-----------~i~~~~~~~~~~~~~f~~l~~~~~~~~~ 74 (473)
+||+|+..|. ...+..++|.++||+|..+.+..... ...+. ++.+.... ...
T Consensus 1 mrivf~gt~~-----fa~~~L~~L~~~~~~i~~Vvt~~d~~~g~~~~~~v~~~A~~~-------gIpv~~~~-----~~~ 63 (305)
T 2bln_A 1 MKTVVFAYHD-----MGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAER-------GIPVYAPD-----NVN 63 (305)
T ss_dssp CEEEEEECHH-----HHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHH-------TCCEECCS-----CCC
T ss_pred CEEEEEEcCH-----HHHHHHHHHHHCCCcEEEEEcCCCCCCCCcCccHHHHHHHHc-------CCCEECCC-----cCC
Confidence 4777775432 22455677888899998887754321 11222 34443221 010
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.+.+.+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 64 ----------------~~~~~~~l~~~--~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL 107 (305)
T 2bln_A 64 ----------------HPLWVERIAQL--SPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSL 107 (305)
T ss_dssp ----------------SHHHHHHHHHT--CCSEEEEESCCSCCCHHHHTTCTTCEEEEESSC
T ss_pred ----------------cHHHHHHHHhc--CCCEEEEeccccccCHHHHhcCcCCEEEecCCc
Confidence 12355667888 999999866533 33444444455567776663
No 143
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}
Probab=52.95 E-value=1.3e+02 Score=26.93 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++|++.- +.|-+ -..|+++|.++||+|+.++..
T Consensus 2 ~~~vlVtG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 35 (311)
T 3m2p_A 2 SLKIAVTG--GTGFL--GQYVVESIKNDGNTPIILTRS 35 (311)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC--CCcHH--HHHHHHHHHhCCCEEEEEeCC
Confidence 35666553 34433 357789999999999999876
No 144
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=52.87 E-value=25 Score=34.31 Aligned_cols=145 Identities=12% Similarity=-0.021 Sum_probs=77.8
Q ss_pred CCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh
Q 042753 271 RDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350 (473)
Q Consensus 271 ~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~ 350 (473)
.+++++.|..|.... ..+..|.+.+..+.++-.... +.+.+.....++....---+.+.|.
T Consensus 11 ~~~~vlVvGgG~va~-------~k~~~L~~~ga~V~vi~~~~~------------~~~~~l~~~~~i~~~~~~~~~~~l~ 71 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAE-------RKARLLLEAGARLTVNALTFI------------PQFTVWANEGMLTLVEGPFDETLLD 71 (457)
T ss_dssp BTCEEEEECCSHHHH-------HHHHHHHHTTBEEEEEESSCC------------HHHHHHHTTTSCEEEESSCCGGGGT
T ss_pred CCCEEEEECCCHHHH-------HHHHHHHhCcCEEEEEcCCCC------------HHHHHHHhcCCEEEEECCCCccccC
Confidence 357888888887652 345666778888776655421 3333322223333222112233455
Q ss_pred ccCccceeeccCchh-----HHHHHhhCCeEecCcccccchhhHHHH-----HHH-hcceEEeccCCCCCCCHHHHHHHH
Q 042753 351 HKAVGAFLTHCGWNS-----VLEGVSAGVVMLTWPMDADQYTNAQLL-----VDQ-LGVGIRVGEGTRNIPESDELARLL 419 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s-----~~eal~~GvP~l~~P~~~DQ~~na~rv-----~~~-~G~G~~l~~~~~~~~~~~~l~~~i 419 (473)
.+++ +|.--|.-. ..+|-..|+|+-++ |++..+... .+. +-+|+.-+ .+...-+..|++.|
T Consensus 72 ~~~l--Vi~at~~~~~n~~i~~~a~~~~i~vn~~----d~~e~~~~~~pa~~~~~~l~iaIsT~--Gksp~la~~ir~~i 143 (457)
T 1pjq_A 72 SCWL--AIAATDDDTVNQRVSDAAESRRIFCNVV----DAPKAASFIMPSIIDRSPLMVAVSSG--GTSPVLARLLREKL 143 (457)
T ss_dssp TCSE--EEECCSCHHHHHHHHHHHHHTTCEEEET----TCTTSSSEECCEEEEETTEEEEEECT--TSCHHHHHHHHHHH
T ss_pred CccE--EEEcCCCHHHHHHHHHHHHHcCCEEEEC----CCcccCceEeeeEEEeCCeEEEEECC--CCChHHHHHHHHHH
Confidence 6665 777777654 34456679996322 333333222 111 12444422 12333367888888
Q ss_pred HHHhCCc-HHHHHHHHHHHHHHHH
Q 042753 420 AQSVDGP-RRERLKARELSGAALS 442 (473)
Q Consensus 420 ~~~l~~~-~~~~~~a~~~~~~~~~ 442 (473)
++.+... ..+-+.+.++++.+++
T Consensus 144 e~~l~~~~~~~~~~~~~~R~~~~~ 167 (457)
T 1pjq_A 144 ESLLPQHLGQVARYAGQLRARVKK 167 (457)
T ss_dssp HHHSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHh
Confidence 8888654 4566666666666654
No 145
>2qs7_A Uncharacterized protein; putative oxidoreductase of the DSRE/DSRF-like family, struct genomics, joint center for structural genomics; HET: MSE EPE; 2.09A {Sulfolobus solfataricus P2}
Probab=52.81 E-value=17 Score=29.05 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=33.9
Q ss_pred CCCCc-cEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhh
Q 042753 1 MLPAG-AHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDS 50 (473)
Q Consensus 1 ~~~~~-~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~ 50 (473)
|.++| .|++++. .+..-.+.+.+.+|...++.|++|+++.+..-...+.+
T Consensus 2 ~~~~m~~kl~II~~sg~~d~~~~a~~lA~~Aaa~g~eV~iF~t~~gv~~l~k 53 (144)
T 2qs7_A 2 MAEEKKKKLSIIVFSGTIDKLMPVGILTSGAAASGYEVNLFFTFWGLQAITK 53 (144)
T ss_dssp -----CCEEEEEECCCSHHHHHHHHHHHHHHHHTTCEEEEEECHHHHHHTBH
T ss_pred ccccccCCEEEEEEcCCHHHHHHHHHHHHHHHHcCCcEEEEEehHHHHHHhc
Confidence 45554 4776554 55567788899999999999999999999755444433
No 146
>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}
Probab=52.56 E-value=12 Score=33.73 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
||||+. ++.|.+- ..|+++|.++||+|+.++...
T Consensus 1 MkILVT--GatGfIG--~~L~~~L~~~G~~V~~l~R~~ 34 (298)
T 4b4o_A 1 MRVLVG--GGTGFIG--TALTQLLNARGHEVTLVSRKP 34 (298)
T ss_dssp CEEEEE--TTTSHHH--HHHHHHHHHTTCEEEEEESSC
T ss_pred CEEEEE--CCCCHHH--HHHHHHHHHCCCEEEEEECCC
Confidence 566654 4555543 568999999999999998643
No 147
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=52.22 E-value=22 Score=30.59 Aligned_cols=44 Identities=14% Similarity=-0.048 Sum_probs=38.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
..||++.+.++-.|-....-++..|..+|++|++++.....+.+
T Consensus 92 ~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~i 135 (215)
T 3ezx_A 92 AGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENV 135 (215)
T ss_dssp CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHH
T ss_pred CCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHH
Confidence 57999999999999999999999999999999999886554444
No 148
>1jx7_A Hypothetical protein YCHN; NEW fold, hexamer, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 2.80A {Escherichia coli} SCOP: c.114.1.1
Probab=52.05 E-value=17 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=30.9
Q ss_pred ccEEEEEc-CC--CCCChHHHHHHHHHHHhC-CC-eEEEEeCCCChhhh
Q 042753 5 GAHILVYP-FP--TSGHIIPLLDLTNRLLTL-GL-NVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~-~~--~~GH~~p~l~La~~L~~r-Gh-~Vt~~~~~~~~~~i 48 (473)
|+|++++. .+ +.......+.+|..+.+. || +|+++...+-...+
T Consensus 1 M~k~~ii~~~~p~~~~~~~~al~~a~~~~~~~g~~~v~vff~~dgV~~~ 49 (117)
T 1jx7_A 1 MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSDAVTAG 49 (117)
T ss_dssp CCEEEEEECCCTTTCSHHHHHHHHHHHHHHHCTTCEEEEEECGGGGGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhcCCCccEEEEEEchHHHHH
Confidence 66776444 43 234456678899999998 99 99998887554433
No 149
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=52.03 E-value=39 Score=30.67 Aligned_cols=38 Identities=18% Similarity=0.164 Sum_probs=30.9
Q ss_pred cEEE-EEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHIL-VYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+|++ +.. -++-|-..-...||..|++.|.+|.++-.+.
T Consensus 104 ~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 104 NNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp CCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4554 444 4688999999999999999999999997664
No 150
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=51.99 E-value=80 Score=31.21 Aligned_cols=94 Identities=14% Similarity=0.200 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh----hhhhccCC-CCCCeeEEEcCCCCCCCCCChhhH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL----LDSLNANH-PSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~----i~~~~~~~-~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
++||+++. .-.-..+|++.|.+.|-+|..+.+...... ++...... .+.+..... .
T Consensus 360 Gkrv~i~g-----d~~~~~~la~~L~ElGm~vv~v~~~~~~~~~~~~~~~ll~~~~~~~~~~v~~-~------------- 420 (519)
T 1qgu_B 360 GKKFGLYG-----DPDFVMGLTRFLLELGCEPTVILSHNANKRWQKAMNKMLDASPYGRDSEVFI-N------------- 420 (519)
T ss_dssp TCEEEEES-----CHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHHSTTCTTCEEEE-S-------------
T ss_pred CCEEEEEC-----CchHHHHHHHHHHHCCCEEEEEEeCCCCHHHHHHHHHHHHhcCCCCCCEEEE-C-------------
Confidence 56787773 344567888888889999987776543222 11111000 000111110 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHh-------CCCcEEE
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAEL-------GLPRVVF 131 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~-------giP~v~~ 131 (473)
.-...+.+++++. +||++|.+.. +..+|+++ |||++.+
T Consensus 421 ---------~d~~~l~~~i~~~--~pDLiig~~~---~~~~a~~~~~~g~~~gip~v~i 465 (519)
T 1qgu_B 421 ---------CDLWHFRSLMFTR--QPDFMIGNSY---GKFIQRDTLAKGKAFEVPLIRL 465 (519)
T ss_dssp ---------CCHHHHHHHHHHH--CCSEEEECGG---GHHHHHHHHHHCGGGCCCEEEC
T ss_pred ---------CCHHHHHHHHhhc--CCCEEEECcc---hHHHHHHhhcccccCCCCeEEe
Confidence 0012345666677 8999999854 67788888 9999874
No 151
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=50.87 E-value=27 Score=33.73 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+|||+.-. |. -...+++++.+.|++|+.+.+.
T Consensus 6 ~~kiLI~g~---g~--~a~~i~~aa~~~G~~~v~v~~~ 38 (446)
T 3ouz_A 6 IKSILIANR---GE--IALRALRTIKEMGKKAICVYSE 38 (446)
T ss_dssp CCEEEECCC---HH--HHHHHHHHHHHTTCEEEEEEEG
T ss_pred cceEEEECC---CH--HHHHHHHHHHHcCCEEEEEEcC
Confidence 467777532 22 4578999999999999888654
No 152
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=50.69 E-value=13 Score=34.30 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+|+||.|+-.++.| |-++|+.|.++||+|+..=..
T Consensus 3 ~~~~i~~iGiGg~G----ms~~A~~L~~~G~~V~~~D~~ 37 (326)
T 3eag_A 3 AMKHIHIIGIGGTF----MGGLAAIAKEAGFEVSGCDAK 37 (326)
T ss_dssp CCCEEEEESCCSHH----HHHHHHHHHHTTCEEEEEESS
T ss_pred CCcEEEEEEECHHH----HHHHHHHHHhCCCEEEEEcCC
Confidence 58999999988887 557999999999999987654
No 153
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=50.41 E-value=78 Score=28.42 Aligned_cols=80 Identities=15% Similarity=0.120 Sum_probs=51.1
Q ss_pred CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCC
Q 042753 33 GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDF 112 (473)
Q Consensus 33 Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~ 112 (473)
..+..+++.+.+.-..+.+ |++...+..... +..++. .....+.+.+++. +..+|+++.
T Consensus 178 ~~~~~v~~H~af~Yf~~~y-------Gl~~~~~~~~~~-~~eps~-----------~~l~~l~~~ik~~--~v~~if~e~ 236 (286)
T 3gi1_A 178 RSKTFVTQHTAFSYLAKRF-------GLKQLGISGISP-EQEPSP-----------RQLKEIQDFVKEY--NVKTIFAED 236 (286)
T ss_dssp SCCEEEEEESCCHHHHHHT-------TCEEEEEECSCC----CCH-----------HHHHHHHHHHHHT--TCCEEEECT
T ss_pred CCCEEEEECCchHHHHHHC-------CCeEeeccccCC-CCCCCH-----------HHHHHHHHHHHHc--CCCEEEEeC
Confidence 4455566677777777776 677665432111 111221 2334566778888 999999998
Q ss_pred Ccc--hHHHHHHHhCCCcEEEec
Q 042753 113 FLG--WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 113 ~~~--~~~~~A~~~giP~v~~~~ 133 (473)
.+. .+-.+|+..|++.+.+.+
T Consensus 237 ~~~~~~~~~la~~~g~~v~~l~p 259 (286)
T 3gi1_A 237 NVNPKIAHAIAKSTGAKVKTLSP 259 (286)
T ss_dssp TSCTHHHHHHHHTTTCEEEECCC
T ss_pred CCChHHHHHHHHHhCCeEEEecc
Confidence 866 455889999999887543
No 154
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=49.98 E-value=40 Score=28.43 Aligned_cols=35 Identities=14% Similarity=0.025 Sum_probs=28.2
Q ss_pred HHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecchH
Q 042753 97 WFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~~~ 136 (473)
-+++. +.|+||.|.. +..+|+++|+|.+.+.+..-
T Consensus 137 ~l~~~--G~~vvVG~~~---~~~~A~~~Gl~~vli~sg~e 171 (196)
T 2q5c_A 137 KVKTE--NIKIVVSGKT---VTDEAIKQGLYGETINSGEE 171 (196)
T ss_dssp HHHHT--TCCEEEECHH---HHHHHHHTTCEEEECCCCHH
T ss_pred HHHHC--CCeEEECCHH---HHHHHHHcCCcEEEEecCHH
Confidence 34456 8999999954 78999999999999887543
No 155
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=49.76 E-value=73 Score=25.49 Aligned_cols=89 Identities=12% Similarity=-0.018 Sum_probs=53.9
Q ss_pred EEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 7 HILVYPFPTSG---HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 7 ~Il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
.++++++++.| ...-+..+++.|.+.+.++++++.....+.+ ..++.+..+- +
T Consensus 22 ~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~~~~~~~g~~~~~~~--------~~~v~~~~~~-------~--------- 77 (170)
T 2o6l_A 22 GVVVFSLGSMVSNMTEERANVIASALAQIPQKVLWRFDGNKPDTL--------GLNTRLYKWI-------P--------- 77 (170)
T ss_dssp CEEEEECCSCCTTCCHHHHHHHHHHHTTSSSEEEEECCSSCCTTC--------CTTEEEESSC-------C---------
T ss_pred CEEEEECCCCcccCCHHHHHHHHHHHHhCCCeEEEEECCcCcccC--------CCcEEEecCC-------C---------
Confidence 46677777776 4455677888888778998888765432111 1245554211 1
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEe
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFS 132 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~ 132 (473)
. .+++... ..|++|+..- ..+..=|-.+|+|.|.+-
T Consensus 78 --------~--~~~l~~~--~ad~~I~~~G-~~t~~Ea~~~G~P~i~~p 113 (170)
T 2o6l_A 78 --------Q--NDLLGHP--KTRAFITHGG-ANGIYEAIYHGIPMVGIP 113 (170)
T ss_dssp --------H--HHHHTST--TEEEEEECCC-HHHHHHHHHHTCCEEECC
T ss_pred --------H--HHHhcCC--CcCEEEEcCC-ccHHHHHHHcCCCEEecc
Confidence 0 1233323 6799998543 334555667899998863
No 156
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=49.02 E-value=44 Score=30.62 Aligned_cols=100 Identities=15% Similarity=0.058 Sum_probs=55.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh----------hhhhhccCCCCCCeeEEEcCCCCCCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP----------LLDSLNANHPSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~----------~i~~~~~~~~~~~~~f~~l~~~~~~~~~ 74 (473)
.+||+|+-.+.. ..+..++|.+.||+|..+.+..... .+..... ..++.+.. + +.+.
T Consensus 3 ~mrIvf~Gt~~f-----a~~~L~~L~~~~~~i~~Vvt~pd~p~grg~~~~~~~v~~~A~---~~gIpv~~-~----~~~~ 69 (314)
T 1fmt_A 3 SLRIIFAGTPDF-----AARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAE---EKGLPVFQ-P----VSLR 69 (314)
T ss_dssp CCEEEEEECSHH-----HHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHH---HTTCCEEC-C----SCSC
T ss_pred CCEEEEEecCHH-----HHHHHHHHHHCCCcEEEEEeCCCCccccccccCcCHHHHHHH---HcCCcEEe-c----CCCC
Confidence 478888876543 2455677777899998777653211 1111100 01344321 1 1110
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.+.+.+.+++. +||++|+-.+.. ....+-......++-++++.
T Consensus 70 ----------------~~~~~~~l~~~--~~Dliv~~~y~~ilp~~il~~~~~g~iNiHpSL 113 (314)
T 1fmt_A 70 ----------------PQENQQLVAEL--QADVMVVVAYGLILPKAVLEMPRLGCINVHGSL 113 (314)
T ss_dssp ----------------SHHHHHHHHHT--TCSEEEEESCCSCCCHHHHHSSTTCEEEEESSS
T ss_pred ----------------CHHHHHHHHhc--CCCEEEEeeccccCCHHHHhhccCCEEEEcCCc
Confidence 24556678888 999999866533 34444454555667776664
No 157
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=48.93 E-value=1.5e+02 Score=26.88 Aligned_cols=95 Identities=13% Similarity=0.027 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC--Chhhhh---hhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN--NLPLLD---SLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~--~~~~i~---~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
++|++. ++.|.+ -..|+++|.++||+|+.++... ...... ... ..++.++..+...
T Consensus 11 ~~IlVt--GatG~i--G~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~----~~~v~~~~~Dl~d----------- 71 (346)
T 3i6i_A 11 GRVLIA--GATGFI--GQFVATASLDAHRPTYILARPGPRSPSKAKIFKALE----DKGAIIVYGLINE----------- 71 (346)
T ss_dssp CCEEEE--CTTSHH--HHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHH----HTTCEEEECCTTC-----------
T ss_pred CeEEEE--CCCcHH--HHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHH----hCCcEEEEeecCC-----------
Confidence 356554 344533 3578899999999999998765 222222 111 1357776544210
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhC-CCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELG-LPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~g-iP~v~~ 131 (473)
.+.+.+++++. ++|+||.-.-.. -.+.+|++.| ++.+.+
T Consensus 72 ----------~~~l~~~~~~~--~~d~Vi~~a~~~n~~~~~~l~~aa~~~g~v~~~v~ 117 (346)
T 3i6i_A 72 ----------QEAMEKILKEH--EIDIVVSTVGGESILDQIALVKAMKAVGTIKRFLP 117 (346)
T ss_dssp ----------HHHHHHHHHHT--TCCEEEECCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred ----------HHHHHHHHhhC--CCCEEEECCchhhHHHHHHHHHHHHHcCCceEEee
Confidence 13445566666 889999755431 2346677778 887764
No 158
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*
Probab=48.00 E-value=1.7e+02 Score=26.92 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+++|++. ++.|.+ -..|+++|.++||+|+.++....
T Consensus 5 ~~~ilVt--GatG~i--G~~l~~~L~~~g~~V~~~~R~~~ 40 (352)
T 1xgk_A 5 KKTIAVV--GATGRQ--GASLIRVAAAVGHHVRAQVHSLK 40 (352)
T ss_dssp CCCEEEE--STTSHH--HHHHHHHHHHTTCCEEEEESCSC
T ss_pred CCEEEEE--CCCCHH--HHHHHHHHHhCCCEEEEEECCCC
Confidence 4566554 444544 35688999999999999886543
No 159
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=47.65 E-value=11 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.227 Sum_probs=38.9
Q ss_pred cCccceeeccCchhHHHHHhh---CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 352 KAVGAFLTHCGWNSVLEGVSA---GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 352 ~~v~~~ItHgG~~s~~eal~~---GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
+++ +|+=||=||+++++.. ++|++.++.. . +| - -..+.++++.++++.++++.
T Consensus 42 ~D~--vv~~GGDGTll~~a~~~~~~~PilGIn~G------------~--~G---f---l~~~~~~~~~~al~~i~~g~ 97 (258)
T 1yt5_A 42 ADL--IVVVGGDGTVLKAAKKAADGTPMVGFKAG------------R--LG---F---LTSYTLDEIDRFLEDLRNWN 97 (258)
T ss_dssp CSE--EEEEECHHHHHHHHTTBCTTCEEEEEESS------------S--CC---S---SCCBCGGGHHHHHHHHHTTC
T ss_pred CCE--EEEEeCcHHHHHHHHHhCCCCCEEEEECC------------C--CC---c---cCcCCHHHHHHHHHHHHcCC
Confidence 454 9999999999999876 8898888521 1 11 1 22456888999999888764
No 160
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=47.46 E-value=76 Score=30.63 Aligned_cols=42 Identities=12% Similarity=0.052 Sum_probs=35.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP 46 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 46 (473)
+.=+++...|+.|-..-++.+|...+.+|..|.|++.+...+
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKK 238 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTT
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHH
Confidence 344678889999999999999999999999999999886544
No 161
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=47.40 E-value=31 Score=30.29 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=28.7
Q ss_pred ccEEEEEcCCCCC-----------ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSG-----------HIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~G-----------H~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++.....+ ...=+......|.+.|++|+++++..
T Consensus 3 m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 8899987765322 12346677888889999999999763
No 162
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=47.39 E-value=1.1e+02 Score=24.75 Aligned_cols=138 Identities=14% Similarity=0.202 Sum_probs=74.8
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhcc
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHK 352 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~ 352 (473)
++.|-|-+||.+ +....++....|++.+..+-..+-+- .+.|+.+.+ |+-..+ -...
T Consensus 3 ~~~V~Iimgs~S--D~~v~~~a~~~l~~~gi~~ev~V~Sa---------HR~p~~~~~-----------~~~~a~-~~g~ 59 (163)
T 3ors_A 3 AMKVAVIMGSSS--DWKIMQESCNMLDYFEIPYEKQVVSA---------HRTPKMMVQ-----------FASEAR-ERGI 59 (163)
T ss_dssp CCCEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT---------TTSHHHHHH-----------HHHHTT-TTTC
T ss_pred CCeEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEECC---------cCCHHHHHH-----------HHHHHH-hCCC
Confidence 456777778776 67778889999999988765555543 456654322 111000 0112
Q ss_pred CccceeeccCch----hHHHHHhhCCeEecCcccccch-hhHHHH--H--HHhcceEE-eccCCC---CCCCHHHHHHHH
Q 042753 353 AVGAFLTHCGWN----SVLEGVSAGVVMLTWPMDADQY-TNAQLL--V--DQLGVGIR-VGEGTR---NIPESDELARLL 419 (473)
Q Consensus 353 ~v~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ~-~na~rv--~--~~~G~G~~-l~~~~~---~~~~~~~l~~~i 419 (473)
++ +|.=.|.- ++.-++ .-+|+|.+|...... .....+ . -. |+.+. +. . +..++.-+...|
T Consensus 60 ~V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlS~vqmp~-GvPVatV~---I~~a~~~nAa~lAa~I 132 (163)
T 3ors_A 60 NI--IIAGAGGAAHLPGMVASL-TTLPVIGVPIETKSLKGIDSLLSIVQMPG-GIPVATTA---IGAAGAKNAGILAARM 132 (163)
T ss_dssp CE--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCCT-TSCCEECC---STHHHHHHHHHHHHHH
T ss_pred cE--EEEECCchhhhHHHHHhc-cCCCEEEeeCCCCCCCCHHHHHHHhhCCC-CCceEEEE---cCCcccHHHHHHHHHH
Confidence 33 66655543 333332 568999999864321 111111 1 13 44212 22 2 234444444444
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHH
Q 042753 420 AQSVDGPRRERLKARELSGAALS 442 (473)
Q Consensus 420 ~~~l~~~~~~~~~a~~~~~~~~~ 442 (473)
-. +.|+ .++++.+++++..++
T Consensus 133 l~-~~d~-~l~~kl~~~r~~~~~ 153 (163)
T 3ors_A 133 LS-IQNP-SLVEKLNQYESSLIQ 153 (163)
T ss_dssp HH-TTCT-HHHHHHHHHHHHHHH
T ss_pred Hh-CCCH-HHHHHHHHHHHHHHH
Confidence 33 3455 899999888888764
No 163
>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1
Probab=47.37 E-value=12 Score=34.35 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=29.9
Q ss_pred ccE-EEEEcCCCCCCh--------------HHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAH-ILVYPFPTSGHI--------------IPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~-Il~~~~~~~GH~--------------~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+.| ||+.+.|++=.+ ..-.++|+++.++|++||+++.+..
T Consensus 36 gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~~s 90 (313)
T 1p9o_A 36 GRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRARS 90 (313)
T ss_dssp TCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred CCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecCCC
Confidence 456 566666665555 2567899999999999999998643
No 164
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=46.88 E-value=29 Score=26.66 Aligned_cols=38 Identities=21% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
+.+.+. +||+||+|...+ .+..+++.+ ++|+|.++...
T Consensus 42 ~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 42 QQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp HHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred HHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 345566 899999998866 355555433 58888876654
No 165
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=46.79 E-value=22 Score=32.53 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=36.2
Q ss_pred hhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 348 ILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 348 lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
....+++ +|.-||=||+++++.. ++|++.++.. . +| . -..+..+++.++++.++
T Consensus 72 ~~~~~d~--vi~~GGDGT~l~a~~~~~~~~~pvlgi~~G------------~--~g-f-----l~~~~~~~~~~~~~~i~ 129 (307)
T 1u0t_A 72 AADGCEL--VLVLGGDGTFLRAAELARNASIPVLGVNLG------------R--IG-F-----LAEAEAEAIDAVLEHVV 129 (307)
T ss_dssp ----CCC--EEEEECHHHHHHHHHHHHHHTCCEEEEECS------------S--CC-S-----SCSEEGGGHHHHHHHHH
T ss_pred cccCCCE--EEEEeCCHHHHHHHHHhccCCCCEEEEeCC------------C--Cc-c-----CcccCHHHHHHHHHHHH
Confidence 3345565 9999999999999754 8999888631 1 11 1 11234667777777777
Q ss_pred CCc
Q 042753 424 DGP 426 (473)
Q Consensus 424 ~~~ 426 (473)
++.
T Consensus 130 ~g~ 132 (307)
T 1u0t_A 130 AQD 132 (307)
T ss_dssp HTC
T ss_pred cCC
Confidence 653
No 166
>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A
Probab=46.24 E-value=1.3e+02 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLG-LNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~ 44 (473)
+++|++. ++.|.+ -..++++|.++| |+|+.++....
T Consensus 5 ~~~ilVt--GatG~i--G~~l~~~L~~~g~~~V~~~~R~~~ 41 (299)
T 2wm3_A 5 KKLVVVF--GGTGAQ--GGSVARTLLEDGTFKVRVVTRNPR 41 (299)
T ss_dssp CCEEEEE--TTTSHH--HHHHHHHHHHHCSSEEEEEESCTT
T ss_pred CCEEEEE--CCCchH--HHHHHHHHHhcCCceEEEEEcCCC
Confidence 4566554 345544 457889999999 99999987644
No 167
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=45.73 E-value=33 Score=25.50 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=26.9
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH----hCCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE----LGLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~----~giP~v~~~~~~~ 136 (473)
.+.+++. +||+||.|...+ .+..+++. .++|.+.++....
T Consensus 39 l~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~~ 84 (120)
T 3f6p_A 39 VEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKDS 84 (120)
T ss_dssp HHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESSC
T ss_pred HHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCCC
Confidence 3445667 899999998866 34544443 3789888765543
No 168
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=44.98 E-value=14 Score=33.27 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=37.3
Q ss_pred ceeeccCchhHHHHHhh------CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCc
Q 042753 356 AFLTHCGWNSVLEGVSA------GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGP 426 (473)
Q Consensus 356 ~~ItHgG~~s~~eal~~------GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~ 426 (473)
++|.=||=||++++... ++|++.+|. |. +.. -..+.++++.++++.++++.
T Consensus 38 ~vv~lGGDGT~l~aa~~~~~~~~~~PilGIn~-----------------G~-lgf--l~~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 38 IVISIGGDGTFLSAFHQYEERLDEIAFIGIHT-----------------GH-LGF--YADWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp EEEEEESHHHHHHHHHHTGGGTTTCEEEEEES-----------------SS-CCS--SCCBCGGGHHHHHHHHHTTC
T ss_pred EEEEEcCcHHHHHHHHHHhhcCCCCCEEEEeC-----------------CC-CCc--CCcCCHHHHHHHHHHHHcCC
Confidence 49999999999999765 899999864 21 111 22455778888888888763
No 169
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=44.92 E-value=28 Score=27.51 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPL-LDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++-...+|+..-+ ..|++.|.++|++|.++....
T Consensus 1 M~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~ 40 (148)
T 3f6r_A 1 MSKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAAD 40 (148)
T ss_dssp -CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTT
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhh
Confidence 678887766677876543 446777878899999887654
No 170
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=44.91 E-value=38 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=28.8
Q ss_pred ccEEEEEcCCCCC-----------ChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSG-----------HIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~G-----------H~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++.....+ ...=+......|.+.|++|+++++..
T Consensus 3 m~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g 52 (243)
T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETG 52 (243)
T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCC
Confidence 7899877764221 33556677788889999999999864
No 171
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=44.75 E-value=12 Score=34.08 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=27.8
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|..+|+||.++-.+..|+ .+|..|+++||+|+++...
T Consensus 11 ~~~~~~~I~VIG~G~mG~-----~iA~~la~~G~~V~~~d~~ 47 (302)
T 1f0y_A 11 KKIIVKHVTVIGGGLMGA-----GIAQVAAATGHTVVLVDQT 47 (302)
T ss_dssp -CCCCCEEEEECCSHHHH-----HHHHHHHHTTCEEEEECSC
T ss_pred ccccCCEEEEECCCHHHH-----HHHHHHHhCCCeEEEEECC
Confidence 444578998887665554 6889999999999987654
No 172
>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}
Probab=44.75 E-value=35 Score=29.68 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 042753 21 PLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 21 p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
--.++|++|.++|++|++++.+.
T Consensus 31 mG~aiA~~~~~~Ga~V~lv~~~~ 53 (232)
T 2gk4_A 31 LGKIITETLLSAGYEVCLITTKR 53 (232)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCc
Confidence 45678999999999999999874
No 173
>3mc3_A DSRE/DSRF-like family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MLY MSE; 1.49A {Sulfolobus solfataricus}
Probab=44.40 E-value=36 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=32.2
Q ss_pred ccEEEEEc-CC--CCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYP-FP--TSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~-~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
++|++|+. .+ +.......+.+|...++.||+|+++.+..-...+
T Consensus 15 ~~kl~ii~~sgP~~~~~~~~al~lA~~A~a~g~eV~vFf~~dGV~~l 61 (134)
T 3mc3_A 15 XXXILIVVTHGPEDLDRTYAPLFMASISASMEYETSVFFMIXGPXLL 61 (134)
T ss_dssp CCEEEEEECCCGGGTHHHHHHHHHHHHHHHTTCEEEEEECTTGGGGG
T ss_pred cceEEEEEccCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEeCcHHHH
Confidence 57887555 44 3456677888899999999999998887554433
No 174
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=44.37 E-value=22 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=21.1
Q ss_pred ccEEEEEcCCCC--CChHHHHHHHHHHHhC
Q 042753 5 GAHILVYPFPTS--GHIIPLLDLTNRLLTL 32 (473)
Q Consensus 5 ~~~Il~~~~~~~--GH~~p~l~La~~L~~r 32 (473)
|+|||+.-|.-+ -.+||...++++|...
T Consensus 2 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 31 (223)
T 3ro0_A 2 EKKVLLTGFDPFGGETVNPSWEAVKRLNGA 31 (223)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHTTTC
T ss_pred CCEEEEEeCCCCCCCCCChHHHHHHHhccc
Confidence 789986664433 2589999999999874
No 175
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=44.29 E-value=1.1e+02 Score=26.10 Aligned_cols=108 Identities=13% Similarity=0.102 Sum_probs=0.0
Q ss_pred CCCccEE-EEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCCC----hhhhhhhccCCCCCCeeEEEcCCCCCCCCC
Q 042753 2 LPAGAHI-LVYPFPTSGHIIPLLDLTNRLLTLG--LNVTVLITQNN----LPLLDSLNANHPSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 2 ~~~~~~I-l~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~----~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~ 74 (473)
+..|.|. +.+-..+.||. +.+|.+++.+.+ ++|..+.+..- .++.++. ++.+..++. ..+.
T Consensus 2 ~~~m~~~ri~vl~SG~gsn--l~all~~~~~~~l~~~I~~Visn~~~a~~l~~A~~~-------gIp~~~~~~---~~~~ 69 (209)
T 4ds3_A 2 PGSMKRNRVVIFISGGGSN--MEALIRAAQAPGFPAEIVAVFSDKAEAGGLAKAEAA-------GIATQVFKR---KDFA 69 (209)
T ss_dssp ----CCEEEEEEESSCCHH--HHHHHHHHTSTTCSEEEEEEEESCTTCTHHHHHHHT-------TCCEEECCG---GGSS
T ss_pred CCcCCCccEEEEEECCcHH--HHHHHHHHHcCCCCcEEEEEEECCcccHHHHHHHHc-------CCCEEEeCc---cccC
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
... ...+.+.+.+++. +||++|+-.+.. ....+-..+.-.++-++++
T Consensus 70 ~r~-----------~~d~~~~~~l~~~--~~Dliv~agy~~il~~~~l~~~~~~~iNiHpS 117 (209)
T 4ds3_A 70 SKE-----------AHEDAILAALDVL--KPDIICLAGYMRLLSGRFIAPYEGRILNIHPS 117 (209)
T ss_dssp SHH-----------HHHHHHHHHHHHH--CCSEEEESSCCSCCCHHHHGGGTTCEEEEESS
T ss_pred CHH-----------HHHHHHHHHHHhc--CCCEEEEeccccCcCHHHHhhccCCeEEECCc
No 176
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}
Probab=44.28 E-value=18 Score=30.91 Aligned_cols=35 Identities=26% Similarity=0.352 Sum_probs=26.1
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+||++.- +.|.+ -..|+++|.++||+|+.++..
T Consensus 3 ~m~~ilItG--atG~i--G~~l~~~L~~~g~~V~~~~r~ 37 (227)
T 3dhn_A 3 KVKKIVLIG--ASGFV--GSALLNEALNRGFEVTAVVRH 37 (227)
T ss_dssp CCCEEEEET--CCHHH--HHHHHHHHHTTTCEEEEECSC
T ss_pred CCCEEEEEc--CCchH--HHHHHHHHHHCCCEEEEEEcC
Confidence 478887663 34433 357899999999999998875
No 177
>2vpq_A Acetyl-COA carboxylase; bacteria, ATP-grAsp domain, biotin carboxylase, ligase; HET: ANP; 2.1A {Staphylococcus aureus}
Probab=43.86 E-value=35 Score=32.92 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-. | .....+++++.+.|++|+++.+.
T Consensus 1 ~k~ilI~g~---g--~~~~~i~~a~~~~G~~vv~v~~~ 33 (451)
T 2vpq_A 1 MKKVLIANR---G--EIAVRIIRACRDLGIQTVAIYSE 33 (451)
T ss_dssp -CEEEECCC---H--HHHHHHHHHHHHTTCEEEEEEEG
T ss_pred CceEEEeCC---C--HHHHHHHHHHHHcCCEEEEEecc
Confidence 578887642 2 25668899999999999988764
No 178
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=42.68 E-value=21 Score=32.25 Aligned_cols=40 Identities=20% Similarity=0.027 Sum_probs=24.7
Q ss_pred CCCCccEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEe
Q 042753 1 MLPAGAHILVYPFPTSGHIIP-LLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~ 40 (473)
|...|+||+++.-|..++... ...+.+.|.++|++|.+..
T Consensus 1 m~~~mkki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~ 41 (292)
T 2an1_A 1 MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQ 41 (292)
T ss_dssp ---CCCEEEEECC-------CHHHHHHHHHHHTTCEEEEEH
T ss_pred CCCcCcEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 667799999998877655544 6678889999999987753
No 179
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=42.63 E-value=1.2e+02 Score=27.50 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=51.7
Q ss_pred HHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEE
Q 042753 29 LLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAI 108 (473)
Q Consensus 29 L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~V 108 (473)
|.....+..+++.+.+.-..+.+ |++...+..... +..++. .....+.+.+++. +..+|
T Consensus 185 l~~~~~~~~v~~H~af~Yfa~~y-------Gl~~~~~~~~~~-~~eps~-----------~~l~~l~~~ik~~--~v~~I 243 (312)
T 2o1e_A 185 AKKAEKKEFITQHTAFGYLAKEY-------GLKQVPIAGLSP-DQEPSA-----------ASLAKLKTYAKEH--NVKVI 243 (312)
T ss_dssp HHSCSCCEEEESSCTTHHHHHHT-------TCEEEECSSCCS-SSCCCH-----------HHHHHHHHHTTSS--CCCEE
T ss_pred hhccCCCEEEEECCchHHHHHHC-------CCeEEEeeccCC-CCCCCH-----------HHHHHHHHHHHHc--CCCEE
Confidence 33334444556666676666666 677665432111 122221 2234556677788 99999
Q ss_pred EeCCCcc--hHHHHHHHhCCCcEEEe
Q 042753 109 LSDFFLG--WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 109 V~D~~~~--~~~~~A~~~giP~v~~~ 132 (473)
+++.... .+-.+|+..|++.+.+.
T Consensus 244 f~e~~~~~~~~~~ia~e~g~~v~~l~ 269 (312)
T 2o1e_A 244 YFEEIASSKVADTLASEIGAKTEVLN 269 (312)
T ss_dssp ECSSCCCHHHHHHHHHHTCCEEECCC
T ss_pred EEeCCCChHHHHHHHHHhCCcEEEec
Confidence 9998877 35688999999987654
No 180
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=42.55 E-value=27 Score=27.14 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=25.7
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh---------CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL---------GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~---------giP~v~~~~~~ 135 (473)
+.++.. +||+||.|...+ .+..+++.+ .+|.+.++...
T Consensus 52 ~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~pii~~s~~~ 100 (143)
T 3m6m_D 52 DAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADV 100 (143)
T ss_dssp HHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCCEEEEESCC
T ss_pred HHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCeEEEEeCCC
Confidence 344556 899999998766 455555544 37888876543
No 181
>2w70_A Biotin carboxylase; ligase, ATP-binding, fatty acid biosynthesis, nucleotide-BIN lipid synthesis, ATP-grAsp domain, fragment screening; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 3rv3_A* 3rup_A* 1dv2_A* 3rv4_A* ...
Probab=42.41 E-value=43 Score=32.26 Aligned_cols=33 Identities=15% Similarity=0.158 Sum_probs=24.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-. | .....+++++.+.|++|+.+.+.
T Consensus 2 ~k~ilI~g~---g--~~~~~~~~a~~~~G~~vv~v~~~ 34 (449)
T 2w70_A 2 LDKIVIANR---G--EIALRILRACKELGIKTVAVHSS 34 (449)
T ss_dssp CSEEEECCC---H--HHHHHHHHHHHHHTCEEEEEEEG
T ss_pred CceEEEeCC---c--HHHHHHHHHHHHcCCeEEEEecc
Confidence 467877653 3 34567999999999999988653
No 182
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=42.33 E-value=1.3e+02 Score=25.63 Aligned_cols=127 Identities=9% Similarity=-0.000 Sum_probs=68.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHH-HHhCCCeEEEEeCCCChhhhhhhccCC-C-------CCCeeEEEcCCCCCCCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNR-LLTLGLNVTVLITQNNLPLLDSLNANH-P-------STSLQSLVLPQPKWPAGSP 75 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~-L~~rGh~Vt~~~~~~~~~~i~~~~~~~-~-------~~~~~f~~l~~~~~~~~~~ 75 (473)
+.-+++...|+.|-..-++.+|.. +.+.|..|.|++.+...+.+....... . ...+.+...... ......
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~ 108 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS-VVGLPS 108 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-----------
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHH-Hhhccc
Confidence 344678889999999999998765 455688999999886655443221100 0 012222211100 000000
Q ss_pred hhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch----------------HHHHHHHhCCCcEEEecc
Q 042753 76 ATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW----------------TQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~----------------~~~~A~~~giP~v~~~~~ 134 (473)
...+..............+.+.++.. ++++||.|..... ...+|+++|||.+.++-.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~ 181 (251)
T 2zts_A 109 EEKFVLEDRFNVDNFLRYIYRVVKAI--NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEA 181 (251)
T ss_dssp ---------CCHHHHHHHHHHHHHHT--TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECC
T ss_pred chhccccccccHHHHHHHHHHHHHhc--CCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 00000000000113345566777778 8999999976431 235678899998887543
No 183
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=41.72 E-value=36 Score=25.91 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=30.2
Q ss_pred ccEEEE-EcCCCCCCh--HHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILV-YPFPTSGHI--IPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~-~~~~~~GH~--~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
|+|+++ +..+-+|+. .-.+.+|..+...||+|.++-..+-.
T Consensus 1 Mkk~~~vv~~~P~g~~~~~~al~~a~a~~a~~~~v~vff~~DGV 44 (119)
T 2d1p_B 1 MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV 44 (119)
T ss_dssp CCCEEEEECSCTTTSTHHHHHHHHHHHHHTTCSCEEEEECGGGG
T ss_pred CcEEEEEEcCCCCCcHHHHHHHHHHHHHHhCCCCEEEEEehHHH
Confidence 677864 445556776 55677889998899999998887543
No 184
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=41.71 E-value=33 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.303 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.+||+++- .|.+- ..+++.|.++||+|+++...
T Consensus 4 ~m~i~IiG---~G~iG--~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAG---IGRVG--YTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEEC---CSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEEC---CCHHH--HHHHHHHHhCCCeEEEEECC
Confidence 46888772 36553 46889999999999998764
No 185
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=41.45 E-value=77 Score=29.68 Aligned_cols=41 Identities=15% Similarity=0.191 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
+.-++++..|+.|-..-.+.++..+..+|..|.|++.+...
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 44567788889999999999999999999999999998543
No 186
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=41.29 E-value=21 Score=30.75 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=20.9
Q ss_pred ccEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 042753 5 GAHILVYPFPTSG--HIIPLLDLTNRLLT 31 (473)
Q Consensus 5 ~~~Il~~~~~~~G--H~~p~l~La~~L~~ 31 (473)
|+|||+.-|.-+| -+||...++++|..
T Consensus 1 m~~VLvTGF~PF~~~~~NPS~~~v~~L~~ 29 (215)
T 3lac_A 1 MKTVLLTGFDPFGGESINPAWEVAKSLHE 29 (215)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHTTTT
T ss_pred CCEEEEEecCCCCCCCCChHHHHHHHhcc
Confidence 7899877654443 47999999999976
No 187
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=41.11 E-value=1.7e+02 Score=24.93 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=60.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhh-hhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLD-SLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~-~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
|+||+++..+. | .-+.+|.++..+. ..+|..+.+......+. ... ..++.+..++.. .+..
T Consensus 2 m~riavl~Sg~-G--snl~ali~~~~~~~l~~eI~~Visn~~~a~v~~~A~----~~gIp~~~~~~~---~~~~------ 65 (211)
T 3p9x_A 2 MKRVAIFASGS-G--TNAEAIIQSQKAGQLPCEVALLITDKPGAKVVERVK----VHEIPVCALDPK---TYPS------ 65 (211)
T ss_dssp -CEEEEECCTT-C--HHHHHHHHHHHTTCCSSEEEEEEESCSSSHHHHHHH----TTTCCEEECCGG---GSSS------
T ss_pred CCEEEEEEeCC-c--hHHHHHHHHHHcCCCCcEEEEEEECCCCcHHHHHHH----HcCCCEEEeChh---hcCc------
Confidence 78998777653 5 3477777776543 35888777653222221 111 125666554421 1110
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
++...+.+.+.|++. +||+||+-.+.. ....+-......++-++++
T Consensus 66 -----r~~~d~~~~~~l~~~--~~Dliv~agy~~Il~~~~l~~~~~~~iNiHpS 112 (211)
T 3p9x_A 66 -----KEAYEIEVVQQLKEK--QIDFVVLAGYMRLVGPTLLGAYEGRIVNIHPS 112 (211)
T ss_dssp -----HHHHHHHHHHHHHHT--TCCEEEESSCCSCCCHHHHHHHTTSEEEEESS
T ss_pred -----hhhhHHHHHHHHHhc--CCCEEEEeCchhhcCHHHHhhccCCeEEECCc
Confidence 113456778889999 999999876643 3444455555556776655
No 188
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=41.03 E-value=25 Score=29.38 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCCChHHHH-HHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPTSGHIIPLL-DLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|+||+++-.. .|+..-+. .+++.|.+.|++|.++.-..
T Consensus 3 ~mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 3 CKPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp CCCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhH
Confidence 57899888777 88765544 34666666799998886543
No 189
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2
Probab=40.97 E-value=57 Score=29.60 Aligned_cols=35 Identities=26% Similarity=0.220 Sum_probs=24.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+++||+. ++.|-+ -..|+++|.++||+|+.+....
T Consensus 14 ~~~vlVT--GatG~i--G~~l~~~L~~~g~~V~~~~r~~ 48 (335)
T 1rpn_A 14 TRSALVT--GITGQD--GAYLAKLLLEKGYRVHGLVARR 48 (335)
T ss_dssp -CEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEE--CCCChH--HHHHHHHHHHCCCeEEEEeCCC
Confidence 5777655 344444 3578999999999999988653
No 190
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=40.65 E-value=85 Score=30.21 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 47 (473)
+.=+++...|+.|-..-++.+|...+. .|..|.|++.+.....
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~ 243 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQ 243 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHH
Confidence 344677889999999999999999887 4999999999865443
No 191
>2p90_A Hypothetical protein CGL1923; structural genomics, PSI-2, MCSG structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} SCOP: c.56.8.1
Probab=40.52 E-value=1.3e+02 Score=27.57 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=26.4
Q ss_pred CCcEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEEeC
Q 042753 272 DESVVYVCFGSRYVLTA-KQIHELAAALEKTDVDFVYCVRE 311 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~ 311 (473)
++++++++ |..-.... .+...+++-.++.+++-|+.++.
T Consensus 101 g~~~lll~-gpeP~~~w~~f~~~vl~~a~~~gV~~vv~Lgg 140 (319)
T 2p90_A 101 NKPFLMLS-GPEPDLRWGDFSNAVVDLVEKFGVENTICLYA 140 (319)
T ss_dssp CCEEEEEE-EECCSBCHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCeEEEEE-CCCChHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 45666665 65544444 55666888888999988877765
No 192
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=40.09 E-value=33 Score=31.24 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=30.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
+||+++-.++.| ..+|..|.+.||+|+++.... .+.+++.
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~-~~~i~~~ 42 (312)
T 3hn2_A 3 LRIAIVGAGALG-----LYYGALLQRSGEDVHFLLRRD-YEAIAGN 42 (312)
T ss_dssp -CEEEECCSTTH-----HHHHHHHHHTSCCEEEECSTT-HHHHHHT
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcCc-HHHHHhC
Confidence 689999877777 457899999999999998865 4555543
No 193
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=39.70 E-value=1.7e+02 Score=25.49 Aligned_cols=94 Identities=9% Similarity=-0.100 Sum_probs=50.3
Q ss_pred cEEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHI-IPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~-~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|||+++-..+.-++ ..+...++.+..-|.+|.+.+.+.-... +... .....
T Consensus 2 mrilvINPnts~~~T~~i~~~~~~~~~p~~~i~~~t~~~gp~~-------------------------i~~~---~d~~~ 53 (245)
T 3qvl_A 2 VRIQVINPNTSLAMTETIGAAARAVAAPGTEILAVCPRAGVPS-------------------------IEGH---FDEAI 53 (245)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHHCCTTEEEEEECCSSSCSS-------------------------CCSH---HHHHH
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCchh-------------------------hcCh---hHHHH
Confidence 58876665555444 4566677777666888887775511110 1111 11111
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHH-HHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQ-GLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~-~~A~~~giP~v~~ 131 (473)
... .+.+.+.+ +++. ++|.||..-.+..++ .+-+.++||++.+
T Consensus 54 a~~-~l~~~~~~-l~~~--g~d~iviaCnt~~~l~~lr~~~~iPvigi 97 (245)
T 3qvl_A 54 AAV-GVLEQIRA-GREQ--GVDGHVIASFGDPGLLAARELAQGPVIGI 97 (245)
T ss_dssp HHH-HHHHHHHH-HHHH--TCSEEEEC-CCCTTHHHHHHHCSSCEEEH
T ss_pred HHH-HHHHHHHH-HHHC--CCCEEEEeCCChhHHHHHHHHcCCCEECc
Confidence 111 22233333 2334 789999776655444 4556679998875
No 194
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=39.69 E-value=17 Score=29.53 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=31.3
Q ss_pred CccEEEEEcCCCC---CChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 4 AGAHILVYPFPTS---GHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 4 ~~~~Il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
...+|+++|.-+. --..+...|++.|.++|.+|.|..+|-.
T Consensus 22 ~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVA 65 (180)
T 1pno_A 22 NASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVA 65 (180)
T ss_dssp TCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTC
T ss_pred hCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3567888874322 3456889999999999999999999843
No 195
>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*
Probab=39.66 E-value=27 Score=31.80 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=27.5
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
+|+||.|+-.+..| .++|+.|.+.||+|++...
T Consensus 2 ~M~kIgfIGlG~MG-----~~mA~~L~~~G~~v~v~dr 34 (300)
T 3obb_A 2 HMKQIAFIGLGHMG-----APMATNLLKAGYLLNVFDL 34 (300)
T ss_dssp -CCEEEEECCSTTH-----HHHHHHHHHTTCEEEEECS
T ss_pred CcCEEEEeeehHHH-----HHHHHHHHhCCCeEEEEcC
Confidence 58899999888777 4789999999999998754
No 196
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=39.59 E-value=1.3e+02 Score=28.01 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=32.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
.-++++-.++.|=..-++.++..+...|..|.|+..+..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 345677788999999999999999999999999998754
No 197
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=39.48 E-value=41 Score=29.17 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=34.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..+|++..-||.|-..-++.+|..|.++|+.|.++..+.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 356788889999999999999999999999998887764
No 198
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=39.46 E-value=35 Score=30.40 Aligned_cols=43 Identities=14% Similarity=0.116 Sum_probs=33.7
Q ss_pred hhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 042753 90 HYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 90 ~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~ 134 (473)
....+.+++++. +||+|++..... .+..+|..+|+|.+...+.
T Consensus 100 ~a~~La~~i~~~--~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 148 (264)
T 1o97_C 100 VGRILTEVIKKE--APDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVAD 148 (264)
T ss_dssp HHHHHHHHHHHH--CCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHhc--CCCEEEEcCCccCCchhhHHHHHHHHhCCCcccceEE
Confidence 345566677777 899999887653 5789999999999997654
No 199
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=39.05 E-value=29 Score=30.30 Aligned_cols=39 Identities=18% Similarity=0.093 Sum_probs=31.4
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+.+. -++.|-..-...||..|+++|++|.++=...
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 56776443 5677999999999999999999999987664
No 200
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=38.85 E-value=49 Score=24.67 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=26.6
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
.+.+... +||+||.|...+ .+..+++.+ ++|.|.++....
T Consensus 40 ~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (126)
T 1dbw_A 40 LAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGD 86 (126)
T ss_dssp HHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTC
T ss_pred HHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 3445666 899999998765 355554443 688888766543
No 201
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=38.60 E-value=24 Score=31.84 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=37.7
Q ss_pred hhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 348 ILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 348 lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
+-..+++ +|.=||=||+++++.. ++|++.++. |. ++. -..+.++++.++++.++
T Consensus 60 ~~~~~D~--vi~~GGDGT~l~a~~~~~~~~~P~lGI~~-----------------Gt-~gf--la~~~~~~~~~al~~i~ 117 (292)
T 2an1_A 60 IGQQADL--AVVVGGDGNMLGAARTLARYDINVIGINR-----------------GN-LGF--LTDLDPDNALQQLSDVL 117 (292)
T ss_dssp HHHHCSE--EEECSCHHHHHHHHHHHTTSSCEEEEBCS-----------------SS-CCS--SCCBCTTSHHHHHHHHH
T ss_pred cccCCCE--EEEEcCcHHHHHHHHHhhcCCCCEEEEEC-----------------CC-ccc--CCcCCHHHHHHHHHHHH
Confidence 3345665 9999999999999743 789998862 21 110 12234566777777777
Q ss_pred CCc
Q 042753 424 DGP 426 (473)
Q Consensus 424 ~~~ 426 (473)
++.
T Consensus 118 ~g~ 120 (292)
T 2an1_A 118 EGR 120 (292)
T ss_dssp TTC
T ss_pred cCC
Confidence 653
No 202
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=38.59 E-value=1.1e+02 Score=27.37 Aligned_cols=35 Identities=14% Similarity=0.171 Sum_probs=25.0
Q ss_pred CCccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.|+||.|+- .+..| ..+|+.|.+.||+|+++...
T Consensus 19 ~~~~~I~iIGg~G~mG-----~~la~~l~~~G~~V~~~~~~ 54 (298)
T 2pv7_A 19 SDIHKIVIVGGYGKLG-----GLFARYLRASGYPISILDRE 54 (298)
T ss_dssp TTCCCEEEETTTSHHH-----HHHHHHHHTTTCCEEEECTT
T ss_pred CCCCEEEEEcCCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 3356888774 44333 56788999999999988654
No 203
>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}
Probab=38.53 E-value=1.6e+02 Score=27.86 Aligned_cols=33 Identities=12% Similarity=-0.019 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGL---NVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~ 42 (473)
|+||+++ ++ | .--..+++.|+++|+ +|+++...
T Consensus 1 M~kVlIi--Ga-G--giG~~ia~~L~~~g~~~~~V~v~~r~ 36 (405)
T 4ina_A 1 MAKVLQI--GA-G--GVGGVVAHKMAMNREVFSHITLASRT 36 (405)
T ss_dssp -CEEEEE--CC-S--HHHHHHHHHHHTCTTTCCEEEEEESC
T ss_pred CCEEEEE--CC-C--HHHHHHHHHHHhCCCCceEEEEEECC
Confidence 6789888 44 6 345789999999984 88887764
No 204
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=38.28 E-value=16 Score=28.59 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=25.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-. |.+ -..+++.|.++||+|+++...
T Consensus 6 ~~~v~I~G~---G~i--G~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGS---EAA--GVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECC---SHH--HHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECC---CHH--HHHHHHHHHHCCCeEEEEECC
Confidence 678888754 443 568999999999999988764
No 205
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=38.24 E-value=87 Score=30.20 Aligned_cols=103 Identities=16% Similarity=0.126 Sum_probs=53.6
Q ss_pred CCCC-ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 1 MLPA-GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 1 ~~~~-~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
|.-. |+|||++. .|. -...+++++.+.|++|+.+.+...... .... . -.+..++.+. .+...
T Consensus 1 m~~~~~k~ILI~g---~g~--~~~~i~~a~~~~G~~vv~v~~~~~~~~~~~~~-a------d~~~~i~~~~----~~~~~ 64 (461)
T 2dzd_A 1 METRRIRKVLVAN---RGE--IAIRVFRACTELGIRTVAIYSKEDVGSYHRYK-A------DEAYLVGEGK----KPIEA 64 (461)
T ss_dssp --CCCCSEEEECS---CHH--HHHHHHHHHHHHTCEEEEEECGGGTTCTHHHH-S------SSEEECSTTS----CTTGG
T ss_pred CCCCcCcEEEEEC---CcH--HHHHHHHHHHHcCCEEEEEECCcccccchhhh-C------CEEEEcCCCC----Ccccc
Confidence 4444 57888763 232 356789999999999998876532211 1111 0 1122333210 00000
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC----cchHHHHHHHhCCCcEE
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFF----LGWTQGLAAELGLPRVV 130 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~----~~~~~~~A~~~giP~v~ 130 (473)
+ .-.+.+.+++++. ++|+|+...- .......++++|+|++.
T Consensus 65 y---------~d~~~l~~~~~~~--~id~v~~~~g~~~E~~~~~~~~~~~gi~~~g 109 (461)
T 2dzd_A 65 Y---------LDIEGIIEIAKAH--DVDAIHPGYGFLSENIQFAKRCREEGIIFIG 109 (461)
T ss_dssp G---------TCHHHHHHHHHHT--TCCEEECCSSSSTTCHHHHHHHHHTTCEESS
T ss_pred c---------cCHHHHHHHHHHh--CCCEEEECCCccccCHHHHHHHHHcCCEEEC
Confidence 0 0013455666677 8999997531 11234566778998543
No 206
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=38.13 E-value=1.5e+02 Score=28.45 Aligned_cols=88 Identities=9% Similarity=-0.078 Sum_probs=50.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
++||+++..++ ...+++..|+++ |++++++.+.+. . .... ..+ ++.+. .
T Consensus 21 ~~~iliiG~g~-----r~~a~a~~~~~~~g~~~v~~~~~~~-~-~~~~--------~~~--~~~~~------~------- 70 (451)
T 2yrx_A 21 HMNVLVIGRGG-----REHAIAWKAAQSPLVGKLYVAPGNP-G-IADV--------AEL--VHIDE------L------- 70 (451)
T ss_dssp SEEEEEEECSH-----HHHHHHHHHHTCTTEEEEEEEECCT-T-GGGT--------SEE--CCCCT------T-------
T ss_pred CCEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEECCCh-h-hhhh--------Cce--eccCC------C-------
Confidence 47899887763 467888888775 898777765322 1 1111 111 22110 0
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
-.+.+.+++++. ++|+|+...-.. ......+.+|+|++.
T Consensus 71 ------d~~~l~~~~~~~--~~d~vi~~~E~~~~~~~~~~l~~~gi~~~g 112 (451)
T 2yrx_A 71 ------DIEALVQFAKQQ--AIDLTIVGPEAPLASGIVDRFMAEGLRIFG 112 (451)
T ss_dssp ------CHHHHHHHHHHT--TCSEEEECSHHHHHTTHHHHHHHTTCCEES
T ss_pred ------CHHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHCCCCEeC
Confidence 013445566667 899999864322 123445678999653
No 207
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=37.93 E-value=2.2e+02 Score=27.28 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=35.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCCChhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQNNLPL 47 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~~~ 47 (473)
+.-+++...|+.|=..-++.++..+.. .|..|.|++.+.....
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~ 246 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQ 246 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHH
Confidence 445678889999999999999999886 6999999998765433
No 208
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=37.77 E-value=2.2e+02 Score=25.48 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=62.1
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC-C--hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN-N--LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~-~--~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
+++||+++..+ .|| -+.+|..+-.+- ..+|..+.+.. . .+..++ .++.+..+|... . .
T Consensus 88 ~~~ri~vl~Sg-~g~--nl~~ll~~~~~g~l~~~i~~Visn~p~~~~~~A~~-------~gIp~~~~~~~~----~-~-- 150 (288)
T 3obi_A 88 TRRKVMLLVSQ-SDH--CLADILYRWRVGDLHMIPTAIVSNHPRETFSGFDF-------GDIPFYHFPVNK----D-T-- 150 (288)
T ss_dssp SCEEEEEEECS-CCH--HHHHHHHHHHTTSSCEEEEEEEESSCGGGSCCTTT-------TTCCEEECCCCT----T-T--
T ss_pred CCcEEEEEEcC-CCC--CHHHHHHHHHCCCCCeEEEEEEcCCChhHHHHHHH-------cCCCEEEeCCCc----c-c--
Confidence 47888776654 355 456666665442 34777766643 1 122222 367777766311 1 0
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
+....+.+.+.+++. ++|+||.-.+.. ....+-..+.-.++-++++
T Consensus 151 --------r~~~~~~~~~~l~~~--~~Dlivlagy~~il~~~~l~~~~~~~iNiHpS 197 (288)
T 3obi_A 151 --------RRQQEAAITALIAQT--HTDLVVLARYMQILSDEMSARLAGRCINIHHS 197 (288)
T ss_dssp --------HHHHHHHHHHHHHHH--TCCEEEESSCCSCCCHHHHHHTTTSEEEEEEE
T ss_pred --------HHHHHHHHHHHHHhc--CCCEEEhhhhhhhCCHHHHhhhcCCeEEeCcc
Confidence 113346677888888 999999876644 4556666666667777665
No 209
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=37.69 E-value=34 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.075 Sum_probs=31.6
Q ss_pred ccEEE-EEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHIL-VYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+|++ +.. -++.|-..-...||..|+++|++|.++-...
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 55665 443 5677999999999999999999999998764
No 210
>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}
Probab=37.41 E-value=60 Score=28.66 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||++.- + |.+- ..|+++|.++||+|+.++...
T Consensus 5 ~~~ilVtG--a-G~iG--~~l~~~L~~~g~~V~~~~r~~ 38 (286)
T 3ius_A 5 TGTLLSFG--H-GYTA--RVLSRALAPQGWRIIGTSRNP 38 (286)
T ss_dssp CCEEEEET--C-CHHH--HHHHHHHGGGTCEEEEEESCG
T ss_pred cCcEEEEC--C-cHHH--HHHHHHHHHCCCEEEEEEcCh
Confidence 46777663 5 6543 578999999999999998754
No 211
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=37.23 E-value=47 Score=25.34 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=24.7
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~ 134 (473)
+.+... .||+||.|.... .+..+++.+ .+|.|.++..
T Consensus 41 ~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 41 EALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECC
Confidence 345556 899999998765 355555443 5788877654
No 212
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=37.18 E-value=40 Score=29.83 Aligned_cols=43 Identities=16% Similarity=-0.042 Sum_probs=33.1
Q ss_pred hhHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 042753 90 HYPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 90 ~~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~ 134 (473)
....+.+++++. +||+|++..... .+..+|..+|+|.+...+.
T Consensus 104 ~A~~La~~i~~~--~~dlVl~G~~s~d~d~~~v~p~lA~~L~~~~vt~v~~ 152 (255)
T 1efv_B 104 VARVLAKLAEKE--KVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQ 152 (255)
T ss_dssp HHHHHHHHHHHH--TCSEEEEESCCTTTCCCCHHHHHHHHHTCCEEEEEEE
T ss_pred HHHHHHHHHHhc--CCCEEEEeCcccCCchhhHHHHHHHHhCCCcccceEE
Confidence 345556667666 899999887653 5789999999999987654
No 213
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=37.12 E-value=36 Score=29.55 Aligned_cols=29 Identities=28% Similarity=0.256 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCC--ChHHHHHHHHHHHhC
Q 042753 4 AGAHILVYPFPTSG--HIIPLLDLTNRLLTL 32 (473)
Q Consensus 4 ~~~~Il~~~~~~~G--H~~p~l~La~~L~~r 32 (473)
.|+|||+.-|.-+| -+||...++++|...
T Consensus 22 ~mk~VLvTGF~PF~g~~~NPS~~~v~~L~~~ 52 (228)
T 4hps_A 22 SMKTILVTAFDPFGGEAINPSWEAIKPLQGS 52 (228)
T ss_dssp CCEEEEEEEECCCTTCSCCHHHHHHGGGTTC
T ss_pred CCCEEEEEeccCCCCCCCChHHHHHHHhcCc
Confidence 48899876654332 589999999999875
No 214
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=37.06 E-value=1.2e+02 Score=26.38 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=25.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|+++++..+.| =-.++|++|+++|++|+++.....
T Consensus 28 k~vlVTGas~g---IG~aia~~l~~~G~~V~~~~r~~~ 62 (260)
T 3gem_A 28 APILITGASQR---VGLHCALRLLEHGHRVIISYRTEH 62 (260)
T ss_dssp CCEEESSTTSH---HHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCChH
Confidence 55666655443 346889999999999999887643
No 215
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=36.89 E-value=1.1e+02 Score=21.79 Aligned_cols=52 Identities=15% Similarity=0.159 Sum_probs=36.0
Q ss_pred HHHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 417 RLLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 417 ~~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
..++++.+|. ...|++|.+..+.+. .++.+-...+...|..|.+-....||+
T Consensus 17 ~~L~~I~~D~sVPRNIRraA~ea~~~L~---~e~~~~~vRAA~aIs~LDeISnDPNmP 71 (89)
T 2qsb_A 17 YLLDELSQDITVPKNVRKVAQDSKAKLS---QENESLDLRCATVLSMLDEMANDPNVP 71 (89)
T ss_dssp HHHHHHHTCTTSCHHHHHHHHHHHHHHT---CTTSCHHHHHHHHHHHHHHHHTCTTSC
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHh---CCCcchhHHHHHHHHHHHHhhcCCCCC
Confidence 3566677776 566666666666664 345566677777888888888888876
No 216
>2w36_A Endonuclease V; hypoxanthine, endonuclease, endonucleasev, hydrolase, inosine, DNA damage, DNA repair; HET: BRU; 2.10A {Thermotoga maritima} PDB: 2w35_A 3hd0_A
Probab=36.86 E-value=24 Score=30.57 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcch---H----HHHHHHhCCCcEEEe
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLGW---T----QGLAAELGLPRVVFS 132 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~~---~----~~~A~~~giP~v~~~ 132 (473)
+.+.+++++...+||+|++|-.... . ..+.-.+|+|+|.+.
T Consensus 91 P~~l~al~~L~~~PdlllvDG~Gi~HpR~~GlA~HlGv~l~~PtIGVA 138 (225)
T 2w36_A 91 PLFLKAWEKLRTKPDVVVFDGQGLAHPRKLGIASHMGLFIEIPTIGVA 138 (225)
T ss_dssp HHHHHHHTTCCSCCSEEEEESCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCeEEEcCCCCCchhhhhhhhCCCEEEEE
Confidence 4455666666558999999987552 2 344555699999974
No 217
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=36.77 E-value=22 Score=33.79 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=40.3
Q ss_pred cHHHhhhccCccceeeccCchhHHHHHhh----CC-eEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHH
Q 042753 344 QQVAILRHKAVGAFLTHCGWNSVLEGVSA----GV-VMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARL 418 (473)
Q Consensus 344 pq~~lL~~~~v~~~ItHgG~~s~~eal~~----Gv-P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~ 418 (473)
+..++-..+++ +|+=||=||++.|... ++ |++.+.. |.. .. -..++.+++.++
T Consensus 107 ~~~~~~~~~Dl--VIvlGGDGTlL~aa~~~~~~~vpPiLGIN~-----------------G~l-GF--Lt~~~~~~~~~a 164 (388)
T 3afo_A 107 PEQDIVNRTDL--LVTLGGDGTILHGVSMFGNTQVPPVLAFAL-----------------GTL-GF--LSPFDFKEHKKV 164 (388)
T ss_dssp CHHHHHHHCSE--EEEEESHHHHHHHHHTTTTSCCCCEEEEEC-----------------SSC-CS--SCCEEGGGHHHH
T ss_pred chhhcccCCCE--EEEEeCcHHHHHHHHHhcccCCCeEEEEEC-----------------CCc-cc--CCcCChHHHHHH
Confidence 34445556776 9999999999999654 67 7888842 211 10 123456778888
Q ss_pred HHHHhCCc
Q 042753 419 LAQSVDGP 426 (473)
Q Consensus 419 i~~~l~~~ 426 (473)
+++++++.
T Consensus 165 l~~il~g~ 172 (388)
T 3afo_A 165 FQEVISSR 172 (388)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 88887754
No 218
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=36.67 E-value=29 Score=31.33 Aligned_cols=38 Identities=5% Similarity=-0.082 Sum_probs=28.2
Q ss_pred ccEEEEEcCCCCCC---hHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGH---IIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH---~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++..+.... ......++++|.++||+|.++.+.
T Consensus 1 mm~i~il~~~~~~~~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 1 MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CCEEEEECSCGGGCCTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred CceEEEEeCcHHhCCcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 46898888764221 234567999999999999988764
No 219
>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*
Probab=36.47 E-value=38 Score=30.86 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.3
Q ss_pred HhhHHHHHHHhcCCCCCcEEEe
Q 042753 89 LHYPALLDWFKSHPSPPVAILS 110 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~ 110 (473)
.....+.++|++. +||+||+
T Consensus 116 ~~~~~l~~~ir~~--rP~vV~t 135 (303)
T 1q74_A 116 QTVGALVAIIREL--RPHVVVT 135 (303)
T ss_dssp HHHHHHHHHHHHH--CCSEEEE
T ss_pred HHHHHHHHHHHHc--CCCEEEE
Confidence 5667888999999 9999996
No 220
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=36.44 E-value=67 Score=25.81 Aligned_cols=97 Identities=13% Similarity=0.038 Sum_probs=61.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhh-hccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDS-LNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~-~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
|..++|++... -.+=.-++.+|++|.+. ||++ +.+......++. . |+....+.- .+ .
T Consensus 9 p~~g~V~lsv~--D~dK~~~v~~ak~~~~ll~Gf~l--~AT~gTa~~L~e~~-------Gl~v~~v~k-----~~--e-- 68 (152)
T 1b93_A 9 PARKHIALVAH--DHCKQMLMSWVERHQPLLEQHVL--YATGTTGNLISRAT-------GMNVNAMLS-----GP--M-- 68 (152)
T ss_dssp CSSCEEEEEEC--GGGHHHHHHHHHHTHHHHTTSEE--EEETTHHHHHHHHH-------CCCCEEECC-----GG--G--
T ss_pred CCCCEEEEEEe--hhhHHHHHHHHHHHHHHhCCCEE--EEccHHHHHHHHHh-------CceeEEEEe-----cC--C--
Confidence 33455655543 23445688999999998 9964 455556667766 5 444443320 00 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC--cc--------hHHHHHHHhCCCcEE
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFF--LG--------WTQGLAAELGLPRVV 130 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~--~~--------~~~~~A~~~giP~v~ 130 (473)
.-.+++.+.+++. +.|+||.-.- .. ....+|-.++||+++
T Consensus 69 ---------GG~p~I~d~I~~g--eIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T 118 (152)
T 1b93_A 69 ---------GGDQQVGALISEG--KIDVLIFFWDPLNAVPHDPDVKALLRLATVWNIPVAT 118 (152)
T ss_dssp ---------THHHHHHHHHHTT--CCCEEEEECCTTSCCTTHHHHHHHHHHHHHTTCCEES
T ss_pred ---------CCCchHHHHHHCC--CccEEEEcCCcccCCcccccHHHHHHHHHHcCCCEEe
Confidence 1346788889998 9999997443 21 134778889999876
No 221
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=36.30 E-value=1.1e+02 Score=27.25 Aligned_cols=83 Identities=11% Similarity=0.063 Sum_probs=50.9
Q ss_pred HHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEE
Q 042753 29 LLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAI 108 (473)
Q Consensus 29 L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~V 108 (473)
|.....+..+++++.+.-..+.+ |++...+..... +..++. .....+.+.+++. +..+|
T Consensus 172 l~~~~~~~~v~~H~af~Yf~~~y-------Gl~~~~~~~~~~-~~eps~-----------~~l~~l~~~ik~~--~v~~i 230 (284)
T 3cx3_A 172 FEKATQKTFVTQHTAFSYLAKRF-------GLNQLGIAGISP-EQEPSP-----------RQLTEIQEFVKTY--KVKTI 230 (284)
T ss_dssp HHSCSCCCEEEEESCCHHHHHHT-------TCCEEEEECSST-TCCCCS-----------HHHHHHHHHHHHT--TCCCE
T ss_pred HhcCCCCEEEEECCchHHHHHHc-------CCEEeeccCCCC-CCCCCH-----------HHHHHHHHHHHHc--CCCEE
Confidence 33333344566677777777766 565554322111 112221 2234556677888 89999
Q ss_pred EeCCCcc--hHHHHHHHhCCCcEEEe
Q 042753 109 LSDFFLG--WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 109 V~D~~~~--~~~~~A~~~giP~v~~~ 132 (473)
+++.... .+-.+|+..|++.+.+.
T Consensus 231 f~e~~~~~~~~~~ia~~~g~~v~~l~ 256 (284)
T 3cx3_A 231 FTESNASSKVAETLVKSTGVGLKTLN 256 (284)
T ss_dssp EECSSSCCHHHHHHHSSSSCCEEECC
T ss_pred EEeCCCCcHHHHHHHHHcCCeEEEec
Confidence 9998876 45688999999987753
No 222
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2
Probab=36.17 E-value=2.4e+02 Score=28.82 Aligned_cols=34 Identities=21% Similarity=0.137 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+++|++.- +.|-+ -..|+++|.++||+|+++...
T Consensus 11 ~~~ilVTG--atG~I--G~~l~~~L~~~G~~V~~~~r~ 44 (699)
T 1z45_A 11 SKIVLVTG--GAGYI--GSHTVVELIENGYDCVVADNL 44 (699)
T ss_dssp CCEEEEET--TTSHH--HHHHHHHHHHTTCEEEEEECC
T ss_pred CCEEEEEC--CCCHH--HHHHHHHHHHCcCEEEEEECC
Confidence 35555543 33433 357899999999999998754
No 223
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=36.14 E-value=27 Score=31.32 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=25.4
Q ss_pred CCCccEEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 2 LPAGAHILVYPF-PTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 2 ~~~~~~Il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
.+-|+||.|+-. +..| ..+|+.|.++||+|+++..
T Consensus 8 ~~mmm~I~iIG~tG~mG-----~~la~~l~~~g~~V~~~~r 43 (286)
T 3c24_A 8 DVGPKTVAILGAGGKMG-----ARITRKIHDSAHHLAAIEI 43 (286)
T ss_dssp SCCCCEEEEETTTSHHH-----HHHHHHHHHSSSEEEEECC
T ss_pred cccCCEEEEECCCCHHH-----HHHHHHHHhCCCEEEEEEC
Confidence 333579988865 4444 5688999999999987654
No 224
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2
Probab=35.80 E-value=34 Score=30.80 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|++|++. ++.|.+ -..++++|.++||+|+.++...
T Consensus 3 ~~~~ilVt--GatG~i--G~~l~~~L~~~g~~V~~~~R~~ 38 (313)
T 1qyd_A 3 KKSRVLIV--GGTGYI--GKRIVNASISLGHPTYVLFRPE 38 (313)
T ss_dssp CCCCEEEE--STTSTT--HHHHHHHHHHTTCCEEEECCSC
T ss_pred CCCEEEEE--cCCcHH--HHHHHHHHHhCCCcEEEEECCC
Confidence 36677665 344554 3568899999999999988754
No 225
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=35.76 E-value=51 Score=25.84 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=25.8
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~ 135 (473)
.+.+++. +||+||.|.... .+..+++. -++|+|.++...
T Consensus 44 l~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (154)
T 3gt7_A 44 VRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILS 91 (154)
T ss_dssp HHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCC
T ss_pred HHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCC
Confidence 3445667 899999998755 34444433 368888876543
No 226
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=35.46 E-value=2.4e+02 Score=25.19 Aligned_cols=107 Identities=14% Similarity=0.079 Sum_probs=63.5
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.++||+++..+. || -+.+|..+-.+- ..+|..+.+..... +... + ...++.+..+|... .
T Consensus 87 ~~~ri~vl~Sg~-g~--nl~~ll~~~~~g~l~~~i~~Visn~~~a-~~~~-A--~~~gIp~~~~~~~~-------~---- 148 (287)
T 3nrb_A 87 DRKKVVIMVSKF-DH--CLGDLLYRHRLGELDMEVVGIISNHPRE-ALSV-S--LVGDIPFHYLPVTP-------A---- 148 (287)
T ss_dssp CCCEEEEEECSC-CH--HHHHHHHHHHHTSSCCEEEEEEESSCGG-GCCC-C--CCTTSCEEECCCCG-------G----
T ss_pred CCcEEEEEEeCC-Cc--CHHHHHHHHHCCCCCeEEEEEEeCChHH-HHHH-H--HHcCCCEEEEeccC-------c----
Confidence 478998776543 54 556776666543 46887777654321 2211 1 11367777665310 0
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
.+....+.+.+++++. +||+||+-.+.. ....+-+.+.-.++-++++
T Consensus 149 ----~r~~~~~~~~~~l~~~--~~Dlivlagym~il~~~~l~~~~~~~iNiHpS 196 (287)
T 3nrb_A 149 ----TKAAQESQIKNIVTQS--QADLIVLARYMQILSDDLSAFLSGRCINIHHS 196 (287)
T ss_dssp ----GHHHHHHHHHHHHHHH--TCSEEEESSCCSCCCHHHHHHHTTSEEEEESS
T ss_pred ----chhhHHHHHHHHHHHh--CCCEEEhhhhhhhcCHHHHhhccCCeEEECcc
Confidence 0113346677888888 999999877644 4556666666667777665
No 227
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=35.42 E-value=1.9e+02 Score=25.92 Aligned_cols=78 Identities=13% Similarity=0.183 Sum_probs=50.6
Q ss_pred CeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC
Q 042753 34 LNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFF 113 (473)
Q Consensus 34 h~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~ 113 (473)
-+..+++.+.+.-..+.+ |++...+... +..++. .....+.+.+++. +..+|+++..
T Consensus 190 ~~~~v~~H~af~Yf~~~y-------Gl~~~~~~~~---~~eps~-----------~~l~~l~~~ik~~--~v~~If~e~~ 246 (291)
T 1pq4_A 190 QRKFIVFHPSWAYFARDY-------NLVQIPIEVE---GQEPSA-----------QELKQLIDTAKEN--NLTMVFGETQ 246 (291)
T ss_dssp CCEEEESSCCCHHHHHHT-------TCEEEESCBT---TBCCCH-----------HHHHHHHHHHHTT--TCCEEEEETT
T ss_pred CCEEEEECCchHHHHHHC-------CCEEeecccC---CCCCCH-----------HHHHHHHHHHHHc--CCCEEEEeCC
Confidence 344555666676666666 6776654321 122221 2234566778888 9999999988
Q ss_pred cc--hHHHHHHHhCCCcEEEecc
Q 042753 114 LG--WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 114 ~~--~~~~~A~~~giP~v~~~~~ 134 (473)
.. .+-.+|+..|++.+.+.+.
T Consensus 247 ~~~~~~~~ia~~~g~~v~~ld~l 269 (291)
T 1pq4_A 247 FSTKSSEAIAAEIGAGVELLDPL 269 (291)
T ss_dssp SCCHHHHHHHHHHTCEEEEECTT
T ss_pred CChHHHHHHHHHcCCeEEEEcCc
Confidence 76 4568899999998876544
No 228
>2qk4_A Trifunctional purine biosynthetic protein adenosi; purine synthesis, enzyme, protein-ATP complex, structural GE structural genomics consortium, SGC; HET: ATP; 2.45A {Homo sapiens}
Probab=34.98 E-value=1.1e+02 Score=29.35 Aligned_cols=32 Identities=13% Similarity=0.063 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~ 42 (473)
+||+++-.++ ...++++.|+++ |++++++.+.
T Consensus 25 ~~IlIlG~g~-----r~~al~~~~a~~~g~~~v~~~~~ 57 (452)
T 2qk4_A 25 ARVLIIGSGG-----REHTLAWKLAQSHHVKQVLVAPG 57 (452)
T ss_dssp EEEEEEECSH-----HHHHHHHHHTTCTTEEEEEEEEC
T ss_pred cEEEEECCCH-----HHHHHHHHHHhcCCCCEEEEECC
Confidence 6888887653 356788888764 9987777654
No 229
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=34.90 E-value=40 Score=29.76 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=32.2
Q ss_pred hHHHHHHHhcCCCCCcEEEeCCCcc------hHHHHHHHhCCCcEEEecc
Q 042753 91 YPALLDWFKSHPSPPVAILSDFFLG------WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 91 ~~~l~~~l~~~~~~pD~VV~D~~~~------~~~~~A~~~giP~v~~~~~ 134 (473)
...+.+++++. +||+|++..... .+..+|+.+|+|.+...+.
T Consensus 102 a~~La~~i~~~--~~dlVl~G~~s~d~~~~~v~p~lA~~L~~~~vt~v~~ 149 (252)
T 1efp_B 102 AKILAAVARAE--GTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASK 149 (252)
T ss_dssp HHHHHHHHHHH--TCSEEEEESCCTTTCCCCHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHhc--CCCEEEEcCCccCCchhhHHHHHHHHhCCCccccEEE
Confidence 34555566666 899999887653 5789999999999987654
No 230
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=34.74 E-value=35 Score=29.60 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=23.9
Q ss_pred cCccceeeccCchhHHHHHhhCCeEecCccc
Q 042753 352 KAVGAFLTHCGWNSVLEGVSAGVVMLTWPMD 382 (473)
Q Consensus 352 ~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~ 382 (473)
+++ +|+.||.......- ..+|+|-++..
T Consensus 64 ~dV--IISRGgta~~Lr~~-~~iPVV~I~vs 91 (225)
T 2pju_A 64 CDA--IIAAGSNGAYLKSR-LSVPVILIKPS 91 (225)
T ss_dssp CSE--EEEEHHHHHHHHTT-CSSCEEEECCC
T ss_pred CeE--EEeCChHHHHHHhh-CCCCEEEecCC
Confidence 555 99999999999975 57999999974
No 231
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=34.67 E-value=39 Score=29.77 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+.|.+..-++-|-..-...||..|+++|++|.++=.+.
T Consensus 1 M~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 1 MRQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred CcEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 556667667788999999999999999999999886553
No 232
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=34.25 E-value=25 Score=29.64 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=23.3
Q ss_pred ccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 5 GAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 5 ~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
|+|||++. .|-.+.-.-...+++.+.+.|++|+++-
T Consensus 1 MmkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~d 37 (192)
T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHE 37 (192)
T ss_dssp -CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEE
T ss_pred CCEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEE
Confidence 67887555 5544322455667778877898888765
No 233
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=34.19 E-value=1.5e+02 Score=27.55 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCC----ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 6 AHILVYPFPTSG----HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 6 ~~Il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.+++++++++.+ ...-+..+.+.|.+.+.+|.+++.....+.+... .+++.+..+-
T Consensus 232 ~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~g~~~~~~l~~~-----~~~v~~~~~~--------------- 291 (398)
T 3oti_A 232 RPEVAITMGTIELQAFGIGAVEPIIAAAGEVDADFVLALGDLDISPLGTL-----PRNVRAVGWT--------------- 291 (398)
T ss_dssp SCEEEECCTTTHHHHHCGGGHHHHHHHHHTSSSEEEEECTTSCCGGGCSC-----CTTEEEESSC---------------
T ss_pred CCEEEEEcCCCccccCcHHHHHHHHHHHHcCCCEEEEEECCcChhhhccC-----CCcEEEEccC---------------
Confidence 456677777662 3445778889998889999998877554433322 1345444211
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++. ..|++|+..- ..+..-|-..|+|.|.+
T Consensus 292 -----------~~~~ll~----~ad~~v~~~G-~~t~~Eal~~G~P~v~~ 325 (398)
T 3oti_A 292 -----------PLHTLLR----TCTAVVHHGG-GGTVMTAIDAGIPQLLA 325 (398)
T ss_dssp -----------CHHHHHT----TCSEEEECCC-HHHHHHHHHHTCCEEEC
T ss_pred -----------CHHHHHh----hCCEEEECCC-HHHHHHHHHhCCCEEEc
Confidence 1123444 3599998654 23455566789999885
No 234
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=34.09 E-value=1.3e+02 Score=25.67 Aligned_cols=103 Identities=11% Similarity=-0.058 Sum_probs=52.3
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEee
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIR 340 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~ 340 (473)
..+-+++.. .+...||-|... ..+....++..+.+-++|-+++.... ...++.+ . -..+.+.
T Consensus 35 ~~lg~~LA~---~G~~vVsGGg~~----GiM~aa~~gAl~~GG~tiGVlP~~~~------~~e~~~~----~-~~~~~~~ 96 (215)
T 2a33_A 35 VDLGNELVS---RNIDLVYGGGSI----GLMGLVSQAVHDGGRHVIGIIPKTLM------PRELTGE----T-VGEVRAV 96 (215)
T ss_dssp HHHHHHHHH---TTCEEEECCCSS----HHHHHHHHHHHHTTCCEEEEEESSCC-------------------CCEEEEE
T ss_pred HHHHHHHHH---CCCEEEECCChh----hHhHHHHHHHHHcCCcEEEEcchHhc------chhhccC----C-CCceeec
Confidence 344555554 445666655531 13334444444555566666654320 0111110 0 0123444
Q ss_pred cCccH-HHhhhccCccceeeccCchhHHHHH---------hhCCeEecCcc
Q 042753 341 GWSQQ-VAILRHKAVGAFLTHCGWNSVLEGV---------SAGVVMLTWPM 381 (473)
Q Consensus 341 ~~~pq-~~lL~~~~v~~~ItHgG~~s~~eal---------~~GvP~l~~P~ 381 (473)
...++ ..++..-+-..++--||.||+-|.. .+++|++++-.
T Consensus 97 ~~f~~Rk~~~~~~sda~VvlpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 147 (215)
T 2a33_A 97 ADMHQRKAEMAKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNV 147 (215)
T ss_dssp SSHHHHHHHHHHTCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECG
T ss_pred CCHHHHHHHHHHhCCEEEEeCCCCchHHHHHHHHHHHHhCCCCCCeEEecC
Confidence 55553 3344333334678899999998875 24899988764
No 235
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=34.02 E-value=1.3e+02 Score=21.70 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=34.5
Q ss_pred HHHHHhCCc---HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhhccCCCcc
Q 042753 418 LLAQSVDGP---RRERLKARELSGAALSAVVKGGSSDRDLNDFIKRINELKSGKNLT 471 (473)
Q Consensus 418 ~i~~~l~~~---~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~ 471 (473)
.++++.+|. ...|+.|.+..+.+. .++.+-...+...|..|.+-....||+
T Consensus 22 ~L~~I~~D~sVPRNIRraA~ea~~~L~---~e~~~~~vRAAtAIs~LDeISnDPNmP 75 (94)
T 2qzg_A 22 MLEEIVEDTTVPRNIRAAADNAKNALH---NEEQELIVRSATAIQYLDDISEDPNMP 75 (94)
T ss_dssp HHHHHHTCTTSCHHHHHHHHHHHHHTT---CTTSCHHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHh---CCCcchhHHHHHHHHHHHHhhcCCCCC
Confidence 455555665 456666666666664 344566777778888888888888876
No 236
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=33.92 E-value=36 Score=25.13 Aligned_cols=97 Identities=19% Similarity=0.021 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLG-LNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
.|++|+++-. |.+ -..+++.|.++| |+|+++.... +.++... ..++.+.......
T Consensus 4 ~~~~v~I~G~---G~i--G~~~~~~l~~~g~~~v~~~~r~~--~~~~~~~----~~~~~~~~~d~~~------------- 59 (118)
T 3ic5_A 4 MRWNICVVGA---GKI--GQMIAALLKTSSNYSVTVADHDL--AALAVLN----RMGVATKQVDAKD------------- 59 (118)
T ss_dssp TCEEEEEECC---SHH--HHHHHHHHHHCSSEEEEEEESCH--HHHHHHH----TTTCEEEECCTTC-------------
T ss_pred CcCeEEEECC---CHH--HHHHHHHHHhCCCceEEEEeCCH--HHHHHHH----hCCCcEEEecCCC-------------
Confidence 3678877743 433 357899999999 9988877642 2332221 1245555433110
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---HHHHHHHhCCCcEEEecchH
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---TQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---~~~~A~~~giP~v~~~~~~~ 136 (473)
.+.+.+.++ ++|+||.-..... ....+.+.|++++-++....
T Consensus 60 --------~~~~~~~~~----~~d~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 104 (118)
T 3ic5_A 60 --------EAGLAKALG----GFDAVISAAPFFLTPIIAKAAKAAGAHYFDLTEDVA 104 (118)
T ss_dssp --------HHHHHHHTT----TCSEEEECSCGGGHHHHHHHHHHTTCEEECCCSCHH
T ss_pred --------HHHHHHHHc----CCCEEEECCCchhhHHHHHHHHHhCCCEEEecCcHH
Confidence 122333332 6799987654332 23556677888776554433
No 237
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=33.91 E-value=46 Score=30.43 Aligned_cols=40 Identities=20% Similarity=0.127 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
+||+++-.++.| ..+|..|.+.||+|+++.... .+.+++.
T Consensus 3 mkI~IiGaGaiG-----~~~a~~L~~~g~~V~~~~r~~-~~~i~~~ 42 (320)
T 3i83_A 3 LNILVIGTGAIG-----SFYGALLAKTGHCVSVVSRSD-YETVKAK 42 (320)
T ss_dssp CEEEEESCCHHH-----HHHHHHHHHTTCEEEEECSTT-HHHHHHH
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCeEEEEeCCh-HHHHHhC
Confidence 689888776666 467889999999999998875 3555554
No 238
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}
Probab=33.89 E-value=18 Score=32.96 Aligned_cols=36 Identities=22% Similarity=0.171 Sum_probs=26.3
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhC-----C-CeEEEEeC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTL-----G-LNVTVLIT 41 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~r-----G-h~Vt~~~~ 41 (473)
|++.++||.|+-.+..| ..+|..|.+. | |+|+++..
T Consensus 4 m~~~~m~I~iiG~G~mG-----~~~a~~L~~~~~~~~g~~~V~~~~r 45 (317)
T 2qyt_A 4 MNQQPIKIAVFGLGGVG-----GYYGAMLALRAAATDGLLEVSWIAR 45 (317)
T ss_dssp ---CCEEEEEECCSHHH-----HHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred CCCCCCEEEEECcCHHH-----HHHHHHHHhCccccCCCCCEEEEEc
Confidence 55566899988666656 3668888888 9 99999876
No 239
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=33.73 E-value=78 Score=23.51 Aligned_cols=38 Identities=8% Similarity=0.087 Sum_probs=29.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||++++..|.|--.-...+-+.+.++|.++.+...+
T Consensus 3 mkkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~ 40 (106)
T 1e2b_A 3 KKHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFP 40 (106)
T ss_dssp CEEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEEC
T ss_pred CcEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 67999999777766667778888888999987765544
No 240
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.68 E-value=74 Score=23.02 Aligned_cols=37 Identities=14% Similarity=0.067 Sum_probs=24.2
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
+.+... +||+||.|.... .+..+.+.+ ++|.+.++..
T Consensus 39 ~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 39 KKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp HHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 344556 899999998765 345444433 5787777554
No 241
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=33.60 E-value=19 Score=32.91 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=25.4
Q ss_pred CCCccEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCC
Q 042753 2 LPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGL-NVTVLITQ 42 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 42 (473)
.+.|+||.|+-.+..| ..+|+.|.+.|| +|++....
T Consensus 21 ~~~~~~I~iIG~G~mG-----~~~A~~L~~~G~~~V~~~dr~ 57 (312)
T 3qsg_A 21 QSNAMKLGFIGFGEAA-----SAIASGLRQAGAIDMAAYDAA 57 (312)
T ss_dssp ----CEEEEECCSHHH-----HHHHHHHHHHSCCEEEEECSS
T ss_pred cCCCCEEEEECccHHH-----HHHHHHHHHCCCCeEEEEcCC
Confidence 3457899888655444 588999999999 99887664
No 242
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=33.30 E-value=55 Score=24.10 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=25.9
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~----giP~v~~~~~~ 135 (473)
.+.+... .||+||.|.... .+..+++.+ .+|.|.++...
T Consensus 39 ~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 39 REIMQNQ--SVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp HHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 3445566 899999998765 355555544 57877776544
No 243
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=33.27 E-value=61 Score=24.22 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=24.2
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
+.+++. +||+||.|.... .+..+.+.+ ++|+|.++....
T Consensus 45 ~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~ 90 (130)
T 3eod_A 45 ELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATEN 90 (130)
T ss_dssp HHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCC
T ss_pred HHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCC
Confidence 345666 899999998755 344444332 588888766543
No 244
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=33.14 E-value=42 Score=30.05 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=31.7
Q ss_pred ccEEEEEc--CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYP--FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~--~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+|++.+. -++.|-..-...||..|+++|++|.++=.+.
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 67766554 5677999999999999999999999987765
No 245
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=33.03 E-value=2e+02 Score=24.99 Aligned_cols=34 Identities=18% Similarity=0.136 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+++++..+.| =-.++|+.|+++|++|.+....
T Consensus 11 GK~alVTGas~G---IG~aia~~la~~Ga~Vv~~~~~ 44 (242)
T 4b79_A 11 GQQVLVTGGSSG---IGAAIAMQFAELGAEVVALGLD 44 (242)
T ss_dssp TCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 678888877764 2478899999999999988764
No 246
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=32.88 E-value=56 Score=25.43 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=26.6
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
.+.+.+. .||+||+|.... .+..+++.+ ++|+|.++....
T Consensus 44 ~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 44 LEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp HHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred HHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 3445566 899999998755 344444433 688888776654
No 247
>3goc_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: YES; 1.60A {Streptomyces avermitilis}
Probab=32.76 E-value=65 Score=28.01 Aligned_cols=41 Identities=27% Similarity=0.417 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc-------hHHHHHHHhCCCcEEEe
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG-------WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~-------~~~~~A~~~giP~v~~~ 132 (473)
+.+.+++++...+||++++|-.-. .+..+.-.+|+|+|.+.
T Consensus 95 P~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 142 (237)
T 3goc_A 95 PTVLAALDALPCPPGLIVCDGYGVAHPRRFGLASHLGVLTGLPTIGVA 142 (237)
T ss_dssp HHHHHHHHTSSSCCSEEEEESCSSCSTTSCCHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCceeecCCCcchhheeeeecCCCEEeee
Confidence 445555565544899999998743 23455566789999973
No 248
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=32.74 E-value=46 Score=26.13 Aligned_cols=97 Identities=8% Similarity=-0.044 Sum_probs=63.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhh-hccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDS-LNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~-~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
+|++|.+... -.+=.-++.+|++|.+. ||+ ++.+......++. . |+....+.- .+.
T Consensus 2 ~~~~ialsv~--D~dK~~~v~~a~~~~~ll~Gf~--l~AT~gTa~~L~e~~-------Gl~v~~v~k-----~~~----- 60 (134)
T 2xw6_A 2 HMRALALIAH--DAKKEEMVAFCQRHREVLARFP--LVATGTTGRRIEEAT-------GLTVEKLLS-----GPL----- 60 (134)
T ss_dssp CSCEEEEEEC--GGGHHHHHHHHHHTHHHHTTSC--EEECHHHHHHHHHHH-------CCCCEECSC-----GGG-----
T ss_pred CccEEEEEEe--cccHHHHHHHHHHHHHHhCCCE--EEEccHHHHHHHHhh-------CceEEEEEe-----cCC-----
Confidence 5778877653 23445688999999998 996 4456656667766 4 454443320 000
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCC--c-----c---hHHHHHHHhCCCcEEE
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFF--L-----G---WTQGLAAELGLPRVVF 131 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~--~-----~---~~~~~A~~~giP~v~~ 131 (473)
.-++++.+.+++. +.|+||.-.- . . .-...|-.++||+++.
T Consensus 61 --------eG~p~I~d~I~~g--eIdlVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~ 111 (134)
T 2xw6_A 61 --------GGDQQMGARVAEG--RILAVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATN 111 (134)
T ss_dssp --------THHHHHHHHHHTT--CEEEEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECS
T ss_pred --------CCcchHHHHHHCC--CccEEEEccCcccCCCccchHHHHHHHHHHcCCCeEcC
Confidence 1246788889998 9999997433 1 1 2457888999998764
No 249
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=32.32 E-value=62 Score=29.89 Aligned_cols=28 Identities=11% Similarity=0.197 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 285 VLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 285 ~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
..+.+....+.+++.....+.||.+.+.
T Consensus 61 g~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (331)
T 4e5s_A 61 SSISSRVQDLHEAFRDPNVKAILTTLGG 88 (331)
T ss_dssp CCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 3456778889999999999999999886
No 250
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.25 E-value=57 Score=23.90 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=25.1
Q ss_pred HHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 97 WFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
.+.+. +||+||.|...+ .+..+++.+ ++|.+.++....
T Consensus 42 ~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (120)
T 1tmy_A 42 KYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQ 86 (120)
T ss_dssp HHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTC
T ss_pred HHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCC
Confidence 34445 799999998765 355445443 588888766543
No 251
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=32.24 E-value=29 Score=29.30 Aligned_cols=30 Identities=0% Similarity=0.057 Sum_probs=24.7
Q ss_pred ccCccceeeccCchhHHHHHhhCCeEecCcccc
Q 042753 351 HKAVGAFLTHCGWNSVLEGVSAGVVMLTWPMDA 383 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~~eal~~GvP~l~~P~~~ 383 (473)
.+++ +|+.||.......- ..+|+|-++..+
T Consensus 51 ~~dV--IISRGgta~~lr~~-~~iPVV~I~~s~ 80 (196)
T 2q5c_A 51 EVDA--IISRGATSDYIKKS-VSIPSISIKVTR 80 (196)
T ss_dssp TCSE--EEEEHHHHHHHHTT-CSSCEEEECCCH
T ss_pred CCeE--EEECChHHHHHHHh-CCCCEEEEcCCH
Confidence 3455 99999999999975 579999999854
No 252
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=32.22 E-value=83 Score=23.48 Aligned_cols=32 Identities=13% Similarity=0.348 Sum_probs=22.5
Q ss_pred CCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
.||+||.|...+ .+..+++.+ .+|.+.++...
T Consensus 51 ~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 51 DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCC
Confidence 799999998866 355555433 57888876654
No 253
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=32.04 E-value=75 Score=23.75 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~ 134 (473)
+.+.+. +||+||.|.... .+..+.+. -++|+|.++..
T Consensus 41 ~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 86 (133)
T 3nhm_A 41 QQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGY 86 (133)
T ss_dssp HHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESC
T ss_pred HHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCC
Confidence 345556 899999998755 34443332 16888877554
No 254
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}
Probab=32.02 E-value=47 Score=29.46 Aligned_cols=33 Identities=33% Similarity=0.290 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||++. . + |. --..|+++|.++||+|+.++..
T Consensus 3 ~~~ilVt-G-a-G~--iG~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIA-G-C-GD--LGLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEE-C-C-SH--HHHHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEE-C-C-CH--HHHHHHHHHHHCCCEEEEEeCC
Confidence 5678776 2 4 63 4567899999999999999865
No 255
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=32.02 E-value=44 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.165 Sum_probs=30.9
Q ss_pred ccEEE-EEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHIL-VYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+|++ ++. -++.|-..-...||..|+++|++|.++-.+.
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 45554 433 6677999999999999999999999987654
No 256
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=31.87 E-value=20 Score=29.26 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=30.3
Q ss_pred ccEEEEEcCCCC---CChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTS---GHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..+|+++|.-+. -=..+...|++.|.++|.+|.|...|-
T Consensus 30 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 71 (186)
T 2bru_C 30 SHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 71 (186)
T ss_dssp CSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSS
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 467888873322 235688999999999999999999984
No 257
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=31.85 E-value=80 Score=26.65 Aligned_cols=37 Identities=22% Similarity=0.209 Sum_probs=29.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++.+++.- ..-+....+.|.+.|++|++++..
T Consensus 9 ~~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~ 45 (208)
T 3ot1_A 9 SKRILVPVAHGSE-EMETVIIVDTLVRAGFQVTMAAVG 45 (208)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcC
Confidence 4789888887664 445566678888899999999986
No 258
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=31.79 E-value=81 Score=27.02 Aligned_cols=102 Identities=6% Similarity=-0.055 Sum_probs=52.7
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEee
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIR 340 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~ 340 (473)
..+-+++.. ++...|+-|... ..+....++..+.+-++|=++..... ..+.-.+. -.++++.
T Consensus 31 ~~lg~~LA~---~g~~lV~GGg~~----GlM~aa~~gA~~~GG~~iGv~p~~l~-----~~e~~~~~------~~~~~~~ 92 (216)
T 1ydh_A 31 IELGNELVK---RKIDLVYGGGSV----GLMGLISRRVYEGGLHVLGIIPKALM-----PIEISGET------VGDVRVV 92 (216)
T ss_dssp HHHHHHHHH---TTCEEEECCCSS----HHHHHHHHHHHHTTCCEEEEEEGGGH-----HHHCCSSC------CSEEEEE
T ss_pred HHHHHHHHH---CCCEEEECCCcc----cHhHHHHHHHHHcCCcEEEEechhcC-----ccccccCC------CCccccc
Confidence 445555654 345556655531 23444555555556566655543110 00000000 0124444
Q ss_pred cCccH-HH-hhhccCccceeeccCchhHHHHH---------hhCCeEecCcc
Q 042753 341 GWSQQ-VA-ILRHKAVGAFLTHCGWNSVLEGV---------SAGVVMLTWPM 381 (473)
Q Consensus 341 ~~~pq-~~-lL~~~~v~~~ItHgG~~s~~eal---------~~GvP~l~~P~ 381 (473)
...+. .. +..+++. .++--||.||+-|.. .+++|++++-.
T Consensus 93 ~~~~~Rk~~~~~~sda-~I~lpGG~GTLdElfE~lt~~qlg~~~kPvvll~~ 143 (216)
T 1ydh_A 93 ADMHERKAAMAQEAEA-FIALPGGYGTMEELLEMITWSQLGIHKKTVGLLNV 143 (216)
T ss_dssp SSHHHHHHHHHHHCSE-EEECSCSHHHHHHHHHHHHHHHHTSCCCEEEEECG
T ss_pred CCHHHHHHHHHHhCCE-EEEeCCCccHHHHHHHHHHHHHhcccCCCEEEecC
Confidence 55543 33 3344553 678899999988775 47999998863
No 259
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=31.65 E-value=57 Score=27.08 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=27.0
Q ss_pred ccEEEEEcCCCCCChHHHH-HHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLL-DLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-....|+..-+. .+++.|.+.|++|.++.-.
T Consensus 5 M~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 43 (200)
T 2a5l_A 5 SPYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVP 43 (200)
T ss_dssp CCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCC
T ss_pred cceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 6799877665577765543 4567777789999887654
No 260
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=31.60 E-value=59 Score=27.39 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=27.5
Q ss_pred CCccEEEEEcCCCCCChHHHH-HHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLL-DLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~~~ 42 (473)
..|+||+++-....|+..-+. .+++.|.+.|++|.++.-.
T Consensus 4 ~~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~ 44 (211)
T 1ydg_A 4 TAPVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVR 44 (211)
T ss_dssp -CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECC
T ss_pred CCCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 357899876655577765543 4566777789999887654
No 261
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=31.58 E-value=55 Score=33.49 Aligned_cols=96 Identities=14% Similarity=0.157 Sum_probs=54.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-----------hhhhhccCCCCCCeeEEEcCCCCCCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-----------LLDSLNANHPSTSLQSLVLPQPKWPAGS 74 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-----------~i~~~~~~~~~~~~~f~~l~~~~~~~~~ 74 (473)
+||+|+..+..| .+..++|.++||+|..+.+..... ..++. ++.+.... ...
T Consensus 1 ~ri~~~~s~~~~-----~~~l~~l~~~~~~i~~v~t~~~~~~~~~~~~~~~~~a~~~-------~ip~~~~~-----~~~ 63 (660)
T 1z7e_A 1 MKTVVFAYHDMG-----CLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAER-------GIPVYAPD-----NVN 63 (660)
T ss_dssp CEEEEEECHHHH-----HHHHHHHHHTTCEEEEEECCCC--------CCHHHHHHHH-------TCCEECCS-----CTT
T ss_pred CEEEEEEeCHHH-----HHHHHHHHhCCCCEEEEEeCCCCCccCcCccHHHHHHHHc-------CCCEeccC-----CCC
Confidence 477776654322 333667777899998888754321 12222 34443221 000
Q ss_pred ChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecchH
Q 042753 75 PATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~~~ 136 (473)
.+.+.+.|++. +||++|+-.+.. ....+-......++-++++..
T Consensus 64 ----------------~~~~~~~l~~~--~~d~iv~~~~~~il~~~~l~~~~~~~iNiH~slL 108 (660)
T 1z7e_A 64 ----------------HPLWVERIAQL--SPDVIFSFYYRHLIYDEILQLAPAGAFNLHGSLL 108 (660)
T ss_dssp ----------------SHHHHHHHHHH--CCSEEEEESCCSCCCHHHHTTCTTCEEEEESSST
T ss_pred ----------------cHHHHHHHHhc--CCCEEEEcCcccccCHHHHhcCCCCeEEecCCcC
Confidence 12345667778 999999866533 444555555666788877743
No 262
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=31.46 E-value=46 Score=28.22 Aligned_cols=38 Identities=11% Similarity=-0.061 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~ 43 (473)
|+||+++.+++...+- ....++.|.++ |++|++++...
T Consensus 3 m~kV~ill~~g~~~~E-~~~~~~~l~~~~~~~v~~vs~~~ 41 (206)
T 3f5d_A 3 LKKALFLILDQYADWE-GVYLASALNQREDWSVHTVSLDP 41 (206)
T ss_dssp CEEEEEECCSSBCTTT-SHHHHHHHHTSTTEEEEEEESSS
T ss_pred ccEEEEEEcCCCcHHH-HHHHHHHHhccCCeEEEEEECCC
Confidence 7899999888887654 34567788887 99999999874
No 263
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=31.38 E-value=2.8e+02 Score=24.73 Aligned_cols=103 Identities=13% Similarity=0.116 Sum_probs=62.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC--ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN--NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLL 80 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~--~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~ 80 (473)
.+||+++..+. || -+.+|..+-.+- ..+|..+.+.. .....++. ++.+..+|... . .
T Consensus 90 ~~ri~vl~Sg~-g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~-------gIp~~~~~~~~----~-~---- 150 (286)
T 3n0v_A 90 RPKVVIMVSKA-DH--CLNDLLYRQRIGQLGMDVVAVVSNHPDLEPLAHWH-------KIPYYHFALDP----K-D---- 150 (286)
T ss_dssp CCEEEEEESSC-CH--HHHHHHHHHHTTSSCCEEEEEEESSSTTHHHHHHT-------TCCEEECCCBT----T-B----
T ss_pred CcEEEEEEeCC-CC--CHHHHHHHHHCCCCCcEEEEEEeCcHHHHHHHHHc-------CCCEEEeCCCc----C-C----
Confidence 57887766544 54 566666665442 46887776643 33333333 67777766311 0 0
Q ss_pred HHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 81 KFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 81 ~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
+....+.+.+.+++. ++|+||+-.+.. ....+-..+.-.++-++++
T Consensus 151 ------r~~~~~~~~~~l~~~--~~Dlivla~y~~il~~~~l~~~~~~~iNiHpS 197 (286)
T 3n0v_A 151 ------KPGQERKVLQVIEET--GAELVILARYMQVLSPELCRRLDGWAINIHHS 197 (286)
T ss_dssp ------HHHHHHHHHHHHHHH--TCSEEEESSCCSCCCHHHHHHTTTSEEEEEEC
T ss_pred ------HHHHHHHHHHHHHhc--CCCEEEecccccccCHHHHhhhcCCeEEeccc
Confidence 112345677888888 999999876644 4555666666667777665
No 264
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=31.31 E-value=51 Score=30.13 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=26.7
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.++||.|+-.+..| ..+|+.|.++||+|+++...
T Consensus 30 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 63 (320)
T 4dll_A 30 YARKITFLGTGSMG-----LPMARRLCEAGYALQVWNRT 63 (320)
T ss_dssp CCSEEEEECCTTTH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCEEEEECccHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 36799998666666 67899999999999887543
No 265
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=31.30 E-value=2.7e+02 Score=25.49 Aligned_cols=34 Identities=9% Similarity=-0.054 Sum_probs=25.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++-.+. .-..+++++++.|++|+.+....
T Consensus 1 MK~I~ilGgg~-----~g~~~~~~Ak~~G~~vv~vd~~~ 34 (363)
T 4ffl_A 1 MKTICLVGGKL-----QGFEAAYLSKKAGMKVVLVDKNP 34 (363)
T ss_dssp CCEEEEECCSH-----HHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCEEEEECCCH-----HHHHHHHHHHHCCCEEEEEeCCC
Confidence 78999886543 23467778888899999987653
No 266
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=31.13 E-value=66 Score=24.42 Aligned_cols=38 Identities=24% Similarity=0.170 Sum_probs=25.0
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~ 135 (473)
+.++.. +||+||.|.... .+..+++. -++|+|.++...
T Consensus 44 ~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 44 EQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 345567 899999998755 34444433 267888776554
No 267
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=31.12 E-value=1.5e+02 Score=27.61 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=34.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+.-++++..|+.|-..-.+.++..+.++|..|.|++.+..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3446777788999999999999999999999999998754
No 268
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=30.99 E-value=30 Score=29.93 Aligned_cols=38 Identities=8% Similarity=-0.103 Sum_probs=32.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|||.|..-++-|=..-...||..|+++|++|.++-.+.
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 47888667777999999999999999999999987664
No 269
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=30.98 E-value=35 Score=31.10 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+||.|+-.+..| ..+|+.|.++||+|++....
T Consensus 20 ~m~~I~iIG~G~mG-----~~~A~~l~~~G~~V~~~dr~ 53 (310)
T 3doj_A 20 HMMEVGFLGLGIMG-----KAMSMNLLKNGFKVTVWNRT 53 (310)
T ss_dssp CSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred cCCEEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 48899988554433 67899999999999987543
No 270
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=30.97 E-value=42 Score=30.59 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=28.5
Q ss_pred CccEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIP-LLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+||+++.-+..++... ...+.+.|.++|++|.+..+.
T Consensus 3 ~m~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~ 42 (307)
T 1u0t_A 3 AHRSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAE 42 (307)
T ss_dssp --CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC--
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecch
Confidence 478999999888776544 677888999999998876443
No 271
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=30.82 E-value=77 Score=28.42 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=24.6
Q ss_pred cEEE-EEcCCCCCChHH--HHHHHHHHHhCCCeEEEEe
Q 042753 6 AHIL-VYPFPTSGHIIP--LLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 6 ~~Il-~~~~~~~GH~~p--~l~La~~L~~rGh~Vt~~~ 40 (473)
|||| ++..|-..-++- ...+.+.|.+.||+|+++-
T Consensus 23 MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 23 MKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 5675 666776655544 3356788888999999874
No 272
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}
Probab=30.75 E-value=54 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.117 Sum_probs=25.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|++|++. ++.|.+ -..++++|.++||+|+.++...
T Consensus 3 ~~~~ilVt--GatG~i--G~~l~~~L~~~g~~V~~~~R~~ 38 (321)
T 3c1o_A 3 HMEKIIIY--GGTGYI--GKFMVRASLSFSHPTFIYARPL 38 (321)
T ss_dssp -CCCEEEE--TTTSTT--HHHHHHHHHHTTCCEEEEECCC
T ss_pred cccEEEEE--cCCchh--HHHHHHHHHhCCCcEEEEECCc
Confidence 36676655 445555 3478899999999999998764
No 273
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=30.73 E-value=18 Score=35.39 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-.+--| +.-|..|+++||+|+++--.
T Consensus 1 Mk~VvVIGaG~~G-----L~aA~~La~~G~~V~VlEa~ 33 (501)
T 4dgk_A 1 MKPTTVIGAGFGG-----LALAIRLQAAGIPVLLLEQR 33 (501)
T ss_dssp CCCEEEECCHHHH-----HHHHHHHHHTTCCEEEECCC
T ss_pred CCCEEEECCcHHH-----HHHHHHHHHCCCcEEEEccC
Confidence 7888887554333 66788999999999998643
No 274
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=30.60 E-value=41 Score=23.31 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=32.4
Q ss_pred hCCeEecCcccccchhhHHHHHH--HhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 372 AGVVMLTWPMDADQYTNAQLLVD--QLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 372 ~GvP~l~~P~~~DQ~~na~rv~~--~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
+|+|++++-..+.|.+.-..-.+ +-|+...+- ...++++|...+++.|.
T Consensus 50 ngkplvvfvngasqndvnefqneakkegvsydvl----kstdpeeltqrvreflk 100 (112)
T 2lnd_A 50 NGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVL----KSTDPEELTQRVREFLK 100 (112)
T ss_dssp CCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEE----ECCCHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcccccHHHHHHHHHhcCcchhhh----ccCCHHHHHHHHHHHHH
Confidence 58999988877777665443221 225555543 45678889888888764
No 275
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=30.58 E-value=2.4e+02 Score=23.59 Aligned_cols=97 Identities=8% Similarity=0.018 Sum_probs=54.4
Q ss_pred hhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEe
Q 042753 260 AHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVI 339 (473)
Q Consensus 260 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v 339 (473)
...+-++|.. ++...||-|.. ..+....++..+.+-++|-+++... + . ..+ ..+.+
T Consensus 47 A~~lg~~LA~---~G~~vVsGg~~-----GiM~aa~~gAl~~GG~~iGVlP~e~--------~-~-~~~------~~~~~ 102 (195)
T 1rcu_A 47 CLELGRTLAK---KGYLVFNGGRD-----GVMELVSQGVREAGGTVVGILPDEE--------A-G-NPY------LSVAV 102 (195)
T ss_dssp HHHHHHHHHH---TTCEEEECCSS-----HHHHHHHHHHHHTTCCEEEEESTTC--------C-C-CTT------CSEEE
T ss_pred HHHHHHHHHH---CCCEEEeCCHH-----HHHHHHHHHHHHcCCcEEEEeCCcc--------c-C-CCC------cceee
Confidence 3556666765 45666663333 3444555555556667777776531 1 1 110 12233
Q ss_pred e--cCcc-HHHhhhccCccceeeccCchhHHH---HHhhCCeEecCc
Q 042753 340 R--GWSQ-QVAILRHKAVGAFLTHCGWNSVLE---GVSAGVVMLTWP 380 (473)
Q Consensus 340 ~--~~~p-q~~lL~~~~v~~~ItHgG~~s~~e---al~~GvP~l~~P 380 (473)
. ...+ -+.++..-+-..++--||.||+-| ++.+|+|+++++
T Consensus 103 ~~~~~f~~Rk~~m~~~sda~IvlpGG~GTL~E~~eal~~~kPV~lln 149 (195)
T 1rcu_A 103 KTGLDFQMRSFVLLRNADVVVSIGGEIGTAIEILGAYALGKPVILLR 149 (195)
T ss_dssp ECCCCHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHTTCCEEEET
T ss_pred ecCCCHHHHHHHHHHhCCEEEEecCCCcHHHHHHHHHhcCCCEEEEC
Confidence 2 2334 344443333346788899998766 477999999996
No 276
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=30.47 E-value=68 Score=24.82 Aligned_cols=42 Identities=7% Similarity=-0.046 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
...+.+++. .||+||.|.... .+..+++.+ ++|+|.++...-
T Consensus 57 ~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 105 (150)
T 4e7p_A 57 EAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKR 105 (150)
T ss_dssp HHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCC
T ss_pred HHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 344556667 899999998755 355544433 688888765543
No 277
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=30.45 E-value=1.1e+02 Score=25.34 Aligned_cols=40 Identities=13% Similarity=0.042 Sum_probs=30.5
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..|+||+++.+++..- .-+....+.|.+.|++|++++...
T Consensus 21 ~~~~kV~ill~~g~~~-~e~~~~~~~l~~ag~~v~~vs~~~ 60 (193)
T 1oi4_A 21 GLSKKIAVLITDEFED-SEFTSPADEFRKAGHEVITIEKQA 60 (193)
T ss_dssp TCCCEEEEECCTTBCT-HHHHHHHHHHHHTTCEEEEEESST
T ss_pred ccCCEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEEEECCC
Confidence 3468999888876653 345566778888999999999864
No 278
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=30.42 E-value=73 Score=23.38 Aligned_cols=38 Identities=13% Similarity=0.031 Sum_probs=25.1
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHH----hCCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAE----LGLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~----~giP~v~~~~~~ 135 (473)
+.+.+. +||+||.|...+ .+..+++. -++|.+.++...
T Consensus 41 ~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 84 (123)
T 1xhf_A 41 QILSEY--DINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (123)
T ss_dssp HHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCC
T ss_pred HHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECCC
Confidence 344556 899999998765 34544444 368887776554
No 279
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=30.41 E-value=55 Score=24.72 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=25.6
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+.+++. +||+||.|...+ .+..+++.+ ++|.|.++...
T Consensus 42 l~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~ 87 (133)
T 3b2n_A 42 MKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFK 87 (133)
T ss_dssp HHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCC
Confidence 3444556 899999998765 355554443 58888876554
No 280
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=30.37 E-value=26 Score=32.73 Aligned_cols=38 Identities=29% Similarity=0.365 Sum_probs=29.1
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
||+...+|+++-.+..| +.+|..|+++|++|+++-...
T Consensus 1 Mm~~~~dVvIIGgGi~G-----l~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 1 MLPEKSEIVVIGGGIVG-----VTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp -CCSBCSEEEECCSHHH-----HHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCcCCEEEECCCHHH-----HHHHHHHHHCCCeEEEEeCCC
Confidence 66666788888665444 788999999999999987653
No 281
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=30.36 E-value=51 Score=29.46 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=32.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+.|.+..-++-|-..-...||..|+++|++|.++=.+.
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 556667667788999999999999999999999886553
No 282
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=30.13 E-value=2.2e+02 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=25.8
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|+++++..+.| =-.++|++|+++|++|.++....
T Consensus 9 ~k~vlVTGas~G---IG~aia~~l~~~G~~V~~~~r~~ 43 (285)
T 3sc4_A 9 GKTMFISGGSRG---IGLAIAKRVAADGANVALVAKSA 43 (285)
T ss_dssp TCEEEEESCSSH---HHHHHHHHHHTTTCEEEEEESCC
T ss_pred CCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEECCh
Confidence 466667665543 24688999999999999988653
No 283
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.10 E-value=64 Score=24.58 Aligned_cols=38 Identities=11% Similarity=0.126 Sum_probs=24.6
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+.+... .||+||.|. .. .+..+.+.+ ++|+|.++...
T Consensus 41 ~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~ 85 (142)
T 2qxy_A 41 FTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAVLSAYV 85 (142)
T ss_dssp HHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEEEECCC
Confidence 3445566 899999998 54 344444332 58888876554
No 284
>2xcl_A Phosphoribosylamine--glycine ligase; GAR-SYN, ATP-grAsp, metal binding; HET: ANP; 2.10A {Bacillus subtilis} PDB: 2xd4_A*
Probab=29.98 E-value=1.4e+02 Score=28.25 Aligned_cols=87 Identities=9% Similarity=-0.073 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|||+++-.++ .+.++++.|.++ |++++++.+. +.. .... ..+ ++.+. .
T Consensus 1 m~ililG~g~-----r~~~~a~~~~~~~g~~~v~~~~~-~~~-~~~~--------~~~--~~~~~------~-------- 49 (422)
T 2xcl_A 1 MNVLIIGKGG-----REHTLAWKAAQSSLVENVFAAPG-NDG-MAAS--------AQL--VNIEE------S-------- 49 (422)
T ss_dssp CEEEEEECSH-----HHHHHHHHHTTCTTCSEEEEEEC-CGG-GTTT--------CEE--CCCCT------T--------
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCCCEEEEeCC-Chh-hhhh--------ccc--cccCc------C--------
Confidence 4788877663 477899999775 8998888654 221 1111 111 22110 0
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
-.+.+.+++++. ++|+|+...-.. ......+.+|+|++.
T Consensus 50 -----d~~~l~~~~~~~--~~d~v~~~~E~~~~~~~~~~l~~~gi~~~g 91 (422)
T 2xcl_A 50 -----DHAGLVSFAKQN--QVGLTIVGPEVPLIEGLVDEFEKAGLHVFG 91 (422)
T ss_dssp -----CHHHHHHHHHHT--TEEEEEECSHHHHHTTHHHHHHHTTCCEES
T ss_pred -----CHHHHHHHHHHc--CCCEEEECCcHHHHHHHHHHHHHCCCCEEC
Confidence 013445566667 899999854322 123445678999753
No 285
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=29.94 E-value=3e+02 Score=24.63 Aligned_cols=104 Identities=16% Similarity=0.183 Sum_probs=63.9
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC--ChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN--NLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRL 79 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~--~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~ 79 (473)
.++||+++..+ .|| -+.+|..+-.+- ..+|..+.+.. .....++. ++.+..+|... . .
T Consensus 94 ~~~ri~vl~Sg-~g~--~l~~ll~~~~~g~l~~~i~~Visn~~~~~~~A~~~-------gIp~~~~~~~~----~-~--- 155 (292)
T 3lou_A 94 ARPKVLIMVSK-LEH--CLADLLFRWKMGELKMDIVGIVSNHPDFAPLAAQH-------GLPFRHFPITA----D-T--- 155 (292)
T ss_dssp SCCEEEEEECS-CCH--HHHHHHHHHHHTSSCCEEEEEEESSSTTHHHHHHT-------TCCEEECCCCS----S-C---
T ss_pred CCCEEEEEEcC-CCc--CHHHHHHHHHcCCCCcEEEEEEeCcHHHHHHHHHc-------CCCEEEeCCCc----C-C---
Confidence 36788877653 365 566676665542 46887777643 33333333 68787766311 1 0
Q ss_pred HHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEecc
Q 042753 80 LKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~~ 134 (473)
+....+.+.+.+++. +||+||+-.+.. ....+-..+.-.++-++++
T Consensus 156 -------r~~~~~~~~~~l~~~--~~Dlivla~y~~il~~~~l~~~~~~~iNiHpS 202 (292)
T 3lou_A 156 -------KAQQEAQWLDVFETS--GAELVILARYMQVLSPEASARLANRAINIHHS 202 (292)
T ss_dssp -------HHHHHHHHHHHHHHH--TCSEEEESSCCSCCCHHHHHHTTTSEEEEEEE
T ss_pred -------HHHHHHHHHHHHHHh--CCCEEEecCchhhCCHHHHhhhcCCeEEeCCC
Confidence 112345677888888 999999876644 4556666666667777665
No 286
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=29.85 E-value=55 Score=32.12 Aligned_cols=34 Identities=15% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
..++||.|+-.++.| +-++|+.|.++|++|+..=
T Consensus 20 ~~~~~v~viGiG~sG----~s~~A~~l~~~G~~V~~~D 53 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAG----MGGIAEVLANEGYQISGSD 53 (494)
T ss_dssp --CCEEEEETTTSTT----HHHHHHHHHHTTCEEEEEC
T ss_pred ccCCEEEEEEEcHhh----HHHHHHHHHhCCCeEEEEE
Confidence 347899999988877 4458999999999999754
No 287
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=29.84 E-value=2.7e+02 Score=24.07 Aligned_cols=42 Identities=17% Similarity=0.055 Sum_probs=24.4
Q ss_pred CCCCccEEEEEcCCCCCCh--HHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPFPTSGHI--IPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~--~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.....+|.++.......+ .-...+.+++.++|+++.+....
T Consensus 1 ~s~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~ 44 (291)
T 3l49_A 1 MSLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG 44 (291)
T ss_dssp -CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4556677865543322222 12456677777789888887654
No 288
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=29.80 E-value=29 Score=32.49 Aligned_cols=35 Identities=20% Similarity=0.136 Sum_probs=27.9
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
..++||.++-.+..| .++|..|.+.||+|++....
T Consensus 27 ~~~mkI~VIGaG~mG-----~alA~~La~~G~~V~l~~r~ 61 (356)
T 3k96_A 27 PFKHPIAILGAGSWG-----TALALVLARKGQKVRLWSYE 61 (356)
T ss_dssp CCCSCEEEECCSHHH-----HHHHHHHHTTTCCEEEECSC
T ss_pred ccCCeEEEECccHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 345789888776665 57899999999999998875
No 289
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=29.78 E-value=30 Score=27.46 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.||+++- .|++- ..+++.|.++||+|+++...
T Consensus 4 ~~vlI~G---~G~vG--~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 4 DHFIVCG---HSILA--INTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp SCEEEEC---CSHHH--HHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEEC---CCHHH--HHHHHHHHHCCCCEEEEECC
Confidence 5677773 35554 78899999999999999875
No 290
>2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus}
Probab=29.58 E-value=56 Score=30.34 Aligned_cols=35 Identities=14% Similarity=-0.100 Sum_probs=26.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|+||+++..+ .-...+++++.++||+|.++.+...
T Consensus 1 M~~Ililg~g-----~~~~~~~~a~~~~G~~v~~~~~~~~ 35 (365)
T 2z04_A 1 MLTVGILGGG-----QLGWMTILEGRKLGFKFHVLEDKEN 35 (365)
T ss_dssp -CEEEEECCS-----HHHHHHHHHHGGGTCEEEEECSSSS
T ss_pred CCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 6789888543 4467889999999999998876543
No 291
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=29.45 E-value=90 Score=23.78 Aligned_cols=39 Identities=15% Similarity=0.013 Sum_probs=25.4
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~ 135 (473)
.+.+.+. +||+||.|.... .+..+.+. -++|+|.++...
T Consensus 44 ~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~ 91 (144)
T 3kht_A 44 LYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNV 91 (144)
T ss_dssp HHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTC
T ss_pred HHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCC
Confidence 3445666 899999998765 34444432 258888876543
No 292
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=29.44 E-value=71 Score=23.23 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHhcCCCCCcEEEeCCCcc--hHHHHHHH----hCCCcEEEecchH
Q 042753 97 WFKSHPSPPVAILSDFFLG--WTQGLAAE----LGLPRVVFSPSGA 136 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~--~~~~~A~~----~giP~v~~~~~~~ 136 (473)
.+... .||+||.|.... .+..+++. -.+|.+.++....
T Consensus 40 ~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~~ 83 (120)
T 2a9o_A 40 QFEAE--QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDS 83 (120)
T ss_dssp HHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCCS
T ss_pred HHHhC--CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCCc
Confidence 34445 799999998765 34444443 3688888765543
No 293
>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*
Probab=29.44 E-value=2.7e+02 Score=23.94 Aligned_cols=34 Identities=9% Similarity=-0.004 Sum_probs=23.8
Q ss_pred cEEEEEcCCC--CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPT--SGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~--~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+++++..+ .| =-.++|++|+++|++|+++...
T Consensus 7 ~k~vlVTGasg~~G---IG~~ia~~l~~~G~~V~~~~r~ 42 (266)
T 3oig_A 7 GRNIVVMGVANKRS---IAWGIARSLHEAGARLIFTYAG 42 (266)
T ss_dssp TCEEEEECCCSTTS---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEEcCCCCCc---HHHHHHHHHHHCCCEEEEecCc
Confidence 4555555543 22 2468899999999999888754
No 294
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=29.40 E-value=2.9e+02 Score=24.20 Aligned_cols=85 Identities=16% Similarity=0.185 Sum_probs=0.0
Q ss_pred CCCccEEEEEcCCCCCChHH--HHHHHHHHHhCCCeEEE-EeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhh
Q 042753 2 LPAGAHILVYPFPTSGHIIP--LLDLTNRLLTLGLNVTV-LITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATR 78 (473)
Q Consensus 2 ~~~~~~Il~~~~~~~GH~~p--~l~La~~L~~rGh~Vt~-~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~ 78 (473)
+....+|+++.......+.. ...+-+++.++|+++.+ ..+....+.-.+.
T Consensus 1 ~s~~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~--------------------------- 53 (305)
T 3g1w_A 1 MSLNETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITV--------------------------- 53 (305)
T ss_dssp ----CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHH---------------------------
T ss_pred CCCCceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHH---------------------------
Q ss_pred HHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch----HHHHHHHhCCCcEEE
Q 042753 79 LLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW----TQGLAAELGLPRVVF 131 (473)
Q Consensus 79 ~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~----~~~~A~~~giP~v~~ 131 (473)
.+.+... ++|.||....... ....+.+.|||+|.+
T Consensus 54 ----------------i~~l~~~--~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 54 ----------------LEQAIAK--NPAGIAISAIDPVELTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp ----------------HHHHHHH--CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE
T ss_pred ----------------HHHHHHh--CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE
No 295
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=29.39 E-value=62 Score=26.79 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCCChHHHH-HHHHHHHh-CCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLL-DLTNRLLT-LGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l-~La~~L~~-rGh~Vt~~~~~~ 43 (473)
|+||+++-..-.|+..-+. .+++.|.+ .|++|.++.-..
T Consensus 1 Mmkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~ 41 (198)
T 3b6i_A 1 MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPE 41 (198)
T ss_dssp -CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCC
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccc
Confidence 6789877766678766544 45677776 799998876553
No 296
>2ip4_A PURD, phosphoribosylamine--glycine ligase; GAR synthetase, purine nucleotid structural genomics, NPPSFA; 2.80A {Thermus thermophilus}
Probab=29.26 E-value=2e+02 Score=27.13 Aligned_cols=86 Identities=15% Similarity=-0.004 Sum_probs=49.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
|||+++-.++ .+.++++.|+++ |++++++.+.+. . .... ..+ ++ +. ..
T Consensus 1 mkililG~g~-----r~~a~a~~l~~~~g~~~v~~~~~~~-~-~~~~--------~~~--~~-~~-------~d------ 49 (417)
T 2ip4_A 1 MKVLVVGSGG-----REHALLWKAAQSPRVKRLYAAPGNA-G-MEAL--------AEL--VP-WN-------GD------ 49 (417)
T ss_dssp CEEEEEESSH-----HHHHHHHHHHTCSSCCEEEEEECCT-T-GGGT--------SEE--CC-CC-------SC------
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCCCEEEEECCCc-c-hhhh--------ccc--CC-Cc-------cC------
Confidence 4788877663 478899999775 899888765321 1 1111 112 22 10 00
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc---hHHHHHHHhCCCcEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLG---WTQGLAAELGLPRVV 130 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~---~~~~~A~~~giP~v~ 130 (473)
.+.+.+++++. ++|+|+...-.. ......+.+|+|++.
T Consensus 50 ------~~~l~~~~~~~--~~d~v~~~~E~~~~~~~~~~l~~~gi~~~g 90 (417)
T 2ip4_A 50 ------VEALADWALAE--GIDLTLVGPEAPLVEGIADAFQARGLLLFG 90 (417)
T ss_dssp ------HHHHHHHHHHH--TCCEEEECSSHHHHTTHHHHHHHHTCCEES
T ss_pred ------HHHHHHHHHHc--CCCEEEECCchHHHHHHHHHHHHCCCCEEC
Confidence 12344555666 899999864322 233455678999764
No 297
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=29.17 E-value=64 Score=24.51 Aligned_cols=38 Identities=16% Similarity=0.041 Sum_probs=25.6
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh----CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL----GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~----giP~v~~~~~~ 135 (473)
+.+... +||+||.|.... .+..+++.+ .+|.|.++...
T Consensus 42 ~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~~~ 85 (136)
T 2qzj_A 42 GKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTYIN 85 (136)
T ss_dssp HHHHHC--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEcCC
Confidence 344556 899999998765 355555443 68888876554
No 298
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}
Probab=29.08 E-value=49 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=25.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|++|++. ++.|.+ -..|+++|.++||+|+.++...
T Consensus 2 ~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~R~~ 36 (307)
T 2gas_A 2 ENKILIL--GPTGAI--GRHIVWASIKAGNPTYALVRKT 36 (307)
T ss_dssp CCCEEEE--STTSTT--HHHHHHHHHHHTCCEEEEECCS
T ss_pred CcEEEEE--CCCchH--HHHHHHHHHhCCCcEEEEECCC
Confidence 5676655 445554 3568899999999999988764
No 299
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=28.94 E-value=64 Score=25.10 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=26.0
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+.+++. +||+||.|.... .+..+++.+ ++|+|.++...
T Consensus 51 ~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 96 (153)
T 3hv2_A 51 LQLLASR--EVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96 (153)
T ss_dssp HHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCC
T ss_pred HHHHHcC--CCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCC
Confidence 3445667 899999998765 345444433 68888876554
No 300
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=28.92 E-value=92 Score=22.64 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=25.5
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+.+... .||++|.|.... .+..+.+.+ .+|++.++...
T Consensus 37 ~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 82 (121)
T 2pl1_A 37 DYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARE 82 (121)
T ss_dssp HHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCC
T ss_pred HHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCC
Confidence 3445566 899999998765 344444432 58888876554
No 301
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.90 E-value=71 Score=27.17 Aligned_cols=32 Identities=22% Similarity=0.357 Sum_probs=24.3
Q ss_pred CCcEEE-eCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 104 PPVAIL-SDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV-~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.||+|| .|+..- -++.=|.++|||+|.++-..
T Consensus 115 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 148 (208)
T 1vi6_A 115 EPEVVFVNDPAIDKQAVSEATAVGIPVVALCDSN 148 (208)
T ss_dssp CCSEEEESCTTTTHHHHHHHHHTTCCEEEEECTT
T ss_pred CCCEEEEECCCcchhHHHHHHHhCCCEEEEeCCC
Confidence 789887 555433 57788999999999997663
No 302
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=28.51 E-value=45 Score=25.77 Aligned_cols=39 Identities=13% Similarity=0.112 Sum_probs=25.8
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhC-C-CcEEEEEeC
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKT-D-VDFVYCVRE 311 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~-~~~i~~~~~ 311 (473)
+.+|+|+.||........+..+.+.+++. + ..+.+.+-.
T Consensus 4 ~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le 44 (133)
T 2xws_A 4 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAA 44 (133)
T ss_dssp EEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESS
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeee
Confidence 56999999997533345577777777653 3 566566443
No 303
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=28.45 E-value=41 Score=31.12 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=29.0
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
||..+.+|+++-.+..| +.+|.+|+++|++|+++-..
T Consensus 2 ~m~~~~dVvVIG~Gi~G-----ls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 2 MMHSQKRVVVLGSGVIG-----LSSALILARKGYSVHILARD 38 (363)
T ss_dssp CCCCSCEEEEECCSHHH-----HHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCCCEEEECCCHHH-----HHHHHHHHhCCCEEEEEecc
Confidence 56667788888766444 77899999999999999754
No 304
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=28.33 E-value=71 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=24.2
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~ 134 (473)
+.+... .||+||.|...+ .+..+++.+ ++|.+.++..
T Consensus 45 ~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 45 KIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp HHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred HHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 445566 899999998765 455555543 4566666544
No 305
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=28.29 E-value=48 Score=26.30 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.++|+++-. |.+- ..+++.|.++|++|+++...
T Consensus 19 ~~~v~IiG~---G~iG--~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 19 SKYIVIFGC---GRLG--SLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp CCEEEEECC---SHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCcEEEECC---CHHH--HHHHHHHHhCCCeEEEEECC
Confidence 478887743 4433 56889999999999998764
No 306
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=28.27 E-value=61 Score=28.19 Aligned_cols=37 Identities=3% Similarity=-0.123 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|.|.++++..+.| =-.++|++|+++|++|+++....
T Consensus 20 ~m~k~vlITGas~g---IG~~la~~l~~~G~~V~~~~r~~ 56 (251)
T 3orf_A 20 HMSKNILVLGGSGA---LGAEVVKFFKSKSWNTISIDFRE 56 (251)
T ss_dssp --CCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEESSC
T ss_pred ccCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCCc
Confidence 37777777765542 34689999999999999887653
No 307
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=28.16 E-value=34 Score=30.87 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||.++-.+..| ..+|..|.++||+|+++...
T Consensus 3 ~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 3 AMKIAIAGAGAMG-----SRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCeEEEECcCHHH-----HHHHHHHHhCCCcEEEEECC
Confidence 6799888655444 56789999999999998653
No 308
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=28.14 E-value=57 Score=24.12 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=23.9
Q ss_pred HhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 98 FKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
+... +||+||.|...+ .+..+++.+ ++|.|.++...
T Consensus 43 ~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (124)
T 1srr_A 43 VTKE--RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYG 85 (124)
T ss_dssp HHHH--CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred Hhcc--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccC
Confidence 3445 799999998765 345444433 68888876554
No 309
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=28.09 E-value=61 Score=23.87 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=22.4
Q ss_pred HHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecc
Q 042753 97 WFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPS 134 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~ 134 (473)
.+.+. .||+||.|.... .+..+++.+ .+|.+.++..
T Consensus 40 ~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 40 IAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEECC
Confidence 34455 799999998765 355444432 5787776544
No 310
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=27.97 E-value=27 Score=32.27 Aligned_cols=33 Identities=24% Similarity=0.152 Sum_probs=26.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++||+++-.++.| ..+|..|.+.||+|+++...
T Consensus 3 ~mkI~IiGaG~~G-----~~~a~~L~~~g~~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVG-----GYLGARLALAGEAINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHH-----HHHHHHHHHTTCCEEEECCH
T ss_pred CCEEEEECcCHHH-----HHHHHHHHHCCCEEEEEECh
Confidence 4789888666555 56799999999999999874
No 311
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=27.96 E-value=62 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.119 Sum_probs=32.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+.|.+..-+|.|=..-...||..|+++|++|.++=.+.
T Consensus 41 ~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 41 AKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 445556667778999999999999999999999987653
No 312
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=27.96 E-value=72 Score=24.42 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=23.8
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
+.+... .||+||.|...+ .+..+++.+ ++|.|.++..
T Consensus 43 ~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 43 QIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp HHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCS
T ss_pred HHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 345556 899999998765 355555443 5777776443
No 313
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=27.90 E-value=80 Score=23.68 Aligned_cols=38 Identities=11% Similarity=0.012 Sum_probs=24.8
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
+.+... .||+||.|.... .+..+++.+ ++|.|.++...
T Consensus 41 ~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (132)
T 3crn_A 41 AKIENE--FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYA 85 (132)
T ss_dssp HHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCC
T ss_pred HHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEeccc
Confidence 344556 899999998765 344444433 57888776553
No 314
>2a33_A Hypothetical protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4o_A
Probab=27.72 E-value=82 Score=26.97 Aligned_cols=40 Identities=18% Similarity=0.129 Sum_probs=27.9
Q ss_pred CCccEEEEEcCCCCCC----hHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYPFPTSGH----IIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH----~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+.|++|.++.....+- ..-...|++.|+++|+.|+.=..+
T Consensus 11 ~~m~~IaV~cGS~~~~~~~y~~~A~~lg~~LA~~G~~vVsGGg~ 54 (215)
T 2a33_A 11 SKFRRICVFCGSSQGKKSSYQDAAVDLGNELVSRNIDLVYGGGS 54 (215)
T ss_dssp CSCSEEEEECCSSCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEECCCCCCchHHHHHHHHHHHHHHHCCCEEEECCCh
Confidence 4578898886555542 345678889999999988765543
No 315
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=27.66 E-value=74 Score=26.29 Aligned_cols=85 Identities=14% Similarity=0.018 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHhC--CCeEEEEeCCCChhhhhh-hccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHH
Q 042753 17 GHIIPLLDLTNRLLTL--GLNVTVLITQNNLPLLDS-LNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPA 93 (473)
Q Consensus 17 GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~i~~-~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (473)
..=.-++.+|+.|.+. ||++ +.+......++. . |+....+.- .+ . .-.++
T Consensus 37 ~dK~~lv~~ak~~~~lL~Gf~L--~AT~gTa~~L~e~~-------Gl~v~~v~k-----~~--e-----------GG~pq 89 (178)
T 1vmd_A 37 RRKRDLLEWVSFNLGTLSKHEL--YATGTTGALLQEKL-------GLKVHRLKS-----GP--L-----------GGDQQ 89 (178)
T ss_dssp GGHHHHHHHHHHSHHHHTTSEE--EECHHHHHHHHHHH-------CCCCEECSC-----GG--G-----------THHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCEE--EEchHHHHHHHHHh-------CceeEEEee-----cC--C-----------CCCch
Confidence 3345689999999998 9964 456656667766 4 454443320 01 0 13467
Q ss_pred HHHHHhcCCCCCcEEEeCCC--cc--------hHHHHHHHhCCCcEE
Q 042753 94 LLDWFKSHPSPPVAILSDFF--LG--------WTQGLAAELGLPRVV 130 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~--~~--------~~~~~A~~~giP~v~ 130 (473)
+.+.|++. +.|+||.-.- .. ....+|-.++||+++
T Consensus 90 I~d~I~~g--eIdlVInt~dPl~~~~h~~D~~~IRR~A~~~~IP~~T 134 (178)
T 1vmd_A 90 IGAMIAEG--KIDVLIFFWDPLEPQAHDVDVKALIRIATVYNIPVAI 134 (178)
T ss_dssp HHHHHHTT--SCCEEEEECCSSSCCTTSCCHHHHHHHHHHTTCCEES
T ss_pred HHHHHHCC--CccEEEEccCccCCCcccccHHHHHHHHHHcCCCEEe
Confidence 88889998 9999997443 11 235788999999876
No 316
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=27.64 E-value=2e+02 Score=27.50 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=75.1
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhc
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRH 351 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~ 351 (473)
..+.|-|-+||.+ +....++....|+..+..+-.-+-+- .+.|+.+. .++-+.+- ..
T Consensus 264 ~~~~V~Ii~gs~S--D~~~~~~a~~~l~~~gi~~~v~V~sa---------HR~p~~~~-----------~~~~~~~~-~g 320 (425)
T 2h31_A 264 SQCRVVVLMGSTS--DLGHCEKIKKACGNFGIPCELRVTSA---------HKGPDETL-----------RIKAEYEG-DG 320 (425)
T ss_dssp CCCEEEEEESCGG--GHHHHHHHHHHHHHTTCCEEEEECCT---------TTCHHHHH-----------HHHHHHHT-TC
T ss_pred CCCeEEEEecCcc--cHHHHHHHHHHHHHcCCceEEeeeec---------cCCHHHHH-----------HHHHHHHH-CC
Confidence 4467888888876 67788889999999988765555443 45665332 11111110 01
Q ss_pred c-CccceeeccCch----hHHHHHhhCCeEecCcccccchhhHHHH--HH--HhcceEEeccCCCCCCCHHHHHHHHHHH
Q 042753 352 K-AVGAFLTHCGWN----SVLEGVSAGVVMLTWPMDADQYTNAQLL--VD--QLGVGIRVGEGTRNIPESDELARLLAQS 422 (473)
Q Consensus 352 ~-~v~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~rv--~~--~~G~G~~l~~~~~~~~~~~~l~~~i~~~ 422 (473)
. .| +|.=+|.- ++..++ .-+|+|.+|....-......+ .+ . |+.+..- ....++.-++..|- -
T Consensus 321 ~~~v--iIa~AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~G~daLls~vqmp~-g~pvatv---~~~~nAa~~A~~Il-~ 392 (425)
T 2h31_A 321 IPTV--FVAVAGRSNGLGPVMSGN-TAYPVISCPPLTPDWGVQDVWSSLRLPS-GLGCSTV---LSPEGSAQFAAQIF-G 392 (425)
T ss_dssp CCEE--EEEECCSSCCHHHHHHHH-CSSCEEECCCCCTTTHHHHGGGTSSCCS-SCCCEEC---CCHHHHHHHHHHHH-H
T ss_pred CCeE--EEEEcCcccchHhHHhcc-CCCCEEEeeCccccccHHHHHHHhcCCC-CCceEEe---cCchHHHHHHHHHH-c
Confidence 2 23 66655543 444443 478999999852211111111 11 2 4443332 22334455554443 3
Q ss_pred hCCcHHHHHHHHHHHHHHHH
Q 042753 423 VDGPRRERLKARELSGAALS 442 (473)
Q Consensus 423 l~~~~~~~~~a~~~~~~~~~ 442 (473)
+.|+ .++++.+..+...+.
T Consensus 393 ~~~~-~l~~kl~~~~~~~~~ 411 (425)
T 2h31_A 393 LSNH-LVWSKLRASILNTWI 411 (425)
T ss_dssp TTCH-HHHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHHHHHHHHH
Confidence 4565 788877777776653
No 317
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=27.55 E-value=46 Score=29.25 Aligned_cols=42 Identities=14% Similarity=-0.077 Sum_probs=32.9
Q ss_pred CccEEE-EEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCCh
Q 042753 4 AGAHIL-VYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNL 45 (473)
Q Consensus 4 ~~~~Il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 45 (473)
.|++++ +.. -++-|=..-...||..|+++|++|.++=.+...
T Consensus 16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 466665 433 567799999999999999999999998766543
No 318
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=27.50 E-value=39 Score=29.61 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.5
Q ss_pred CCCCccEEE-EEc-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 1 MLPAGAHIL-VYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 1 ~~~~~~~Il-~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|...+++++ +.. -++.|-..-...||..|+++|++|.++-.+..
T Consensus 1 m~~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 1 MLRAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp ----CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 455555554 443 56678999999999999999999999876644
No 319
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=27.44 E-value=49 Score=32.15 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=27.6
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++++. +||++|.+.. ...+|+++|||++.+
T Consensus 376 ~l~~~i~~~--~pDl~ig~~~---~~~~a~k~gip~~~~ 409 (458)
T 1mio_B 376 DVHQWIKNE--GVDLLISNTY---GKFIAREENIPFVRF 409 (458)
T ss_dssp HHHHHHHHS--CCSEEEESGG---GHHHHHHHTCCEEEC
T ss_pred HHHHHHHhc--CCCEEEeCcc---hHHHHHHcCCCEEEe
Confidence 356677778 9999998854 678899999999875
No 320
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=27.40 E-value=2.1e+02 Score=27.37 Aligned_cols=90 Identities=10% Similarity=0.001 Sum_probs=49.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGL-NVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
|..+|||++-.++ .-.+|++.|.+.+. ...++. +.+... ... -....+..
T Consensus 19 p~~m~ilvlG~gg-----re~ala~~l~~s~~v~~v~~~-pgn~g~-~~~--------~~~~~i~~-------------- 69 (442)
T 3lp8_A 19 PGSMNVLVIGSGG-----REHSMLHHIRKSTLLNKLFIA-PGREGM-SGL--------ADIIDIDI-------------- 69 (442)
T ss_dssp -CCEEEEEEECSH-----HHHHHHHHHTTCTTEEEEEEE-ECCGGG-TTT--------SEECCCCT--------------
T ss_pred CCCCEEEEECCCh-----HHHHHHHHHHhCCCCCEEEEE-CCChHH-hhc--------cceeecCc--------------
Confidence 4468999987664 44568999988754 444444 333211 111 11111110
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcch---HHHHHHHhCCCcEE
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFLGW---TQGLAAELGLPRVV 130 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~---~~~~A~~~giP~v~ 130 (473)
.-.+.+.++.++. ++|+||...-... .....+++|+|++.
T Consensus 70 -------~d~~~l~~~a~~~--~id~vv~g~E~~l~~~~~~~l~~~Gi~~~G 112 (442)
T 3lp8_A 70 -------NSTIEVIQVCKKE--KIELVVIGPETPLMNGLSDALTEEGILVFG 112 (442)
T ss_dssp -------TCHHHHHHHHHHT--TCCEEEECSHHHHHTTHHHHHHHTTCEEES
T ss_pred -------CCHHHHHHHHHHh--CCCEEEECCcHHHHHHHHHHHHhcCCcEec
Confidence 1123445566777 8999998643332 33556778999763
No 321
>2qx0_A 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase; 3-layered alpha-BATA-alpha fold, homodimer, ternary complex, transferase; HET: APC PH2; 1.80A {Yersinia pestis}
Probab=27.39 E-value=1e+02 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=25.2
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDV 303 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 303 (473)
.+|+++||-...+...++..+++|++.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (159)
T 2qx0_A 3 RVYIALGSNLAMPLQQVSAAREALAHLPR 31 (159)
T ss_dssp EEEEEEEECSSSCHHHHHHHHHHHHTCTT
T ss_pred EEEEEEeCchhhHHHHHHHHHHHHhcCCC
Confidence 58999999988899999999999988643
No 322
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=27.38 E-value=2.3e+02 Score=23.56 Aligned_cols=119 Identities=12% Similarity=-0.011 Sum_probs=0.0
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEee
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIR 340 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~ 340 (473)
..+-+++.. ++..+|+-|.... .+....++..+.+-+++=++.... ...+..+......+++.
T Consensus 34 ~~lg~~la~---~g~~lv~GGG~~G----lM~a~~~ga~~~GG~viGv~p~~l----------~~~e~~~~~~~~~i~~~ 96 (189)
T 3sbx_A 34 GAVGAAIAA---RGWTLVWGGGHVS----AMGAVSSAARAHGGWTVGVIPKML----------VHRELADHDADELVVTE 96 (189)
T ss_dssp HHHHHHHHH---TTCEEEECCBCSH----HHHHHHHHHHTTTCCEEEEEETTT----------TTTTTBCTTCSEEEEES
T ss_pred HHHHHHHHH---CCCEEEECCCccC----HHHHHHHHHHHcCCcEEEEcCchh----------hhcccCCCCCCeeEEcC
Q ss_pred cCccHHHhhhccCccceeeccCchhHHHHH---------hhCCeEecC---cccccchhhHHHHHHHhc
Q 042753 341 GWSQQVAILRHKAVGAFLTHCGWNSVLEGV---------SAGVVMLTW---PMDADQYTNAQLLVDQLG 397 (473)
Q Consensus 341 ~~~pq~~lL~~~~v~~~ItHgG~~s~~eal---------~~GvP~l~~---P~~~DQ~~na~rv~~~~G 397 (473)
.+---..++-..+-..++--||.||+-|.. .+++|++++ .+|.+=..+..++.+. |
T Consensus 97 ~~~~Rk~~m~~~sda~IalPGG~GTLdElfe~lt~~qlg~~~kPvvlln~~gfw~~l~~~l~~~~~~-G 164 (189)
T 3sbx_A 97 TMWERKQVMEDRANAFITLPGGVGTLDELLDVWTEGYLGMHDKSIVVLDPWGHFDGLRAWLSELADT-G 164 (189)
T ss_dssp SHHHHHHHHHHHCSEEEECSCCHHHHHHHHHHHHHHHTTSCCCCEEEECTTCTTHHHHHHHHHHHHT-T
T ss_pred CHHHHHHHHHHHCCEEEEeCCCcchHHHHHHHHHHHHhcccCCCEEEecCCccchHHHHHHHHHHHC-C
No 323
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=27.25 E-value=73 Score=27.45 Aligned_cols=37 Identities=11% Similarity=-0.020 Sum_probs=30.3
Q ss_pred CccEEEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 4 AGAHILVYP-FPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 4 ~~~~Il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
.|+.|++.. .++.|-..-...|++.|.++|++|.++=
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K 40 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK 40 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec
Confidence 366666555 4566999999999999999999999964
No 324
>2yw2_A Phosphoribosylamine--glycine ligase; glycinamide ribonucleotide synthetase, GAR synthetase, ATP B purine nucleotide biosynthetic pathway; HET: ATP; 1.80A {Aquifex aeolicus} PDB: 2yya_A
Probab=27.25 E-value=2.1e+02 Score=26.99 Aligned_cols=32 Identities=6% Similarity=-0.091 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL-GLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~ 42 (473)
|||+++-.++ .+.+++..|+++ |++++++.+.
T Consensus 1 m~ililG~g~-----r~~~~a~~~~~~~g~~~v~~~~~ 33 (424)
T 2yw2_A 1 MKVLVVGNGG-----REHAIAWKVAQSPLVKELYVAKG 33 (424)
T ss_dssp CEEEEEESSH-----HHHHHHHHHTTCTTCSEEEEEEC
T ss_pred CEEEEECCCH-----HHHHHHHHHhhCCCCCEEEEECC
Confidence 4788876653 467888888765 9998877654
No 325
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=27.14 E-value=70 Score=25.85 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=34.1
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcch---------------HHHHHHHhCCCcEEEecchH
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLGW---------------TQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~~---------------~~~~A~~~giP~v~~~~~~~ 136 (473)
.+...+.+++++. +||.+..+..++. ...++...|+|+.-+.+...
T Consensus 46 ~i~~~l~~~i~~~--~Pd~vaiE~vf~~~n~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~v 106 (158)
T 1hjr_A 46 LIYAGVTEIITQF--QPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQV 106 (158)
T ss_dssp HHHHHHHHHHHHH--CCSEEEEEECCCCCCTTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HHHHHHHHHHHHc--CCCEEEEeecccccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 5667788999999 9999887766541 13566778999988876644
No 326
>1f9y_A HPPK, protein (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase); pyrophosphoryl transfer, catalytic mechanism, folate, ternary complex; HET: APC HHR; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1eqm_A* 1hka_A 1q0n_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 3h4a_A* 3ip0_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A ...
Probab=27.07 E-value=75 Score=25.71 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.1
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTD 302 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 302 (473)
.+|+++||-...+...++..+++|++.+
T Consensus 2 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~ 29 (158)
T 1f9y_A 2 VAYIAIGSNLASPLEQVNAALKALGDIP 29 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTST
T ss_pred EEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 5899999998778888888999998764
No 327
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}
Probab=27.05 E-value=33 Score=31.42 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=29.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSL 51 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~ 51 (473)
++||+++-.++.| ..+|..|.+.||+|+++..+...+.+.+.
T Consensus 19 ~~kI~IiGaGa~G-----~~~a~~L~~~G~~V~l~~~~~~~~~i~~~ 60 (318)
T 3hwr_A 19 GMKVAIMGAGAVG-----CYYGGMLARAGHEVILIARPQHVQAIEAT 60 (318)
T ss_dssp -CEEEEESCSHHH-----HHHHHHHHHTTCEEEEECCHHHHHHHHHH
T ss_pred CCcEEEECcCHHH-----HHHHHHHHHCCCeEEEEEcHhHHHHHHhC
Confidence 6789888776666 56889999999999999333233344433
No 328
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=27.02 E-value=56 Score=26.61 Aligned_cols=40 Identities=20% Similarity=0.118 Sum_probs=26.8
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
.+.+++. .||+||.|...+ .|..+++.+ ++|+|.++...-
T Consensus 44 l~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~ 90 (184)
T 3rqi_A 44 LKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYAS 90 (184)
T ss_dssp HHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred HHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 3445666 899999998765 355555433 688888776543
No 329
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=27.02 E-value=77 Score=29.05 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=23.4
Q ss_pred HhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEecc
Q 042753 98 FKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSPS 134 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~~ 134 (473)
|... +||+||..........--++.|||++.+...
T Consensus 112 i~al--~PDLIi~~~~~~~~~~~L~~~gipvv~~~~~ 146 (335)
T 4hn9_A 112 CVAA--TPDVVFLPMKLKKTADTLESLGIKAVVVNPE 146 (335)
T ss_dssp HHHT--CCSEEEEEGGGHHHHHHHHHTTCCEEEECCC
T ss_pred HHhc--CCCEEEEeCcchhHHHHHHHcCCCEEEEcCC
Confidence 4446 8999998754223334446779999988543
No 330
>1ulz_A Pyruvate carboxylase N-terminal domain; biotin carboxylase; 2.20A {Aquifex aeolicus} SCOP: b.84.2.1 c.30.1.1 d.142.1.2
Probab=27.01 E-value=88 Score=30.04 Aligned_cols=97 Identities=10% Similarity=0.097 Sum_probs=53.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh-hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP-LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFM 83 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~ 83 (473)
|+|||++-. | .-...+++++.+.|++|+.+.+..... ..... .-.+..++. . . .. .+.
T Consensus 2 ~k~ilI~g~---g--~~~~~~~~a~~~~G~~vv~v~~~~~~~~~~~~~-------ad~~~~~~p----~-~-~~---~~~ 60 (451)
T 1ulz_A 2 VNKVLVANR---G--EIAVRIIRACKELGIPTVAIYNEVESTARHVKL-------ADEAYMIGT----D-P-LD---TYL 60 (451)
T ss_dssp CSSEEECCC---H--HHHHHHHHHHHHHTCCEEEEECGGGTTCHHHHH-------SSEEEECCS----S-T-TH---HHH
T ss_pred CceEEEECC---c--HHHHHHHHHHHHcCCeEEEEechhhcccchhhh-------CcEEEEcCC----C-c-cc---ccC
Confidence 467877642 2 235679999999999999887642211 11111 012222321 0 1 11 010
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc----chHHHHHHHhCCCcEE
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFL----GWTQGLAAELGLPRVV 130 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~----~~~~~~A~~~giP~v~ 130 (473)
-.+.+.++.++. ++|+|+...-. ......++.+|+|++.
T Consensus 61 ------d~~~l~~~~~~~--~~d~v~~~~g~~~e~~~~~~~~~~~gi~~~g 103 (451)
T 1ulz_A 61 ------NKQRIINLALEV--GADAIHPGYGFLAENAEFAKMCEEAGITFIG 103 (451)
T ss_dssp ------CHHHHHHHHHHT--TCCEEECCSSTTTTCHHHHHHHHHTTCEESS
T ss_pred ------CHHHHHHHHHHc--CCCEEEECCCccccCHHHHHHHHHCCCeEEC
Confidence 024566667777 89999975321 1224566788998653
No 331
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=26.91 E-value=71 Score=24.13 Aligned_cols=39 Identities=23% Similarity=0.167 Sum_probs=25.3
Q ss_pred HHHhcCCCCCcEEEeCCCcc---hHHHHHHH----hCCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG---WTQGLAAE----LGLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~---~~~~~A~~----~giP~v~~~~~~~ 136 (473)
+.+.+. .||+||.|.... .+..+++. .++|+|.++....
T Consensus 48 ~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~ls~~~~ 93 (140)
T 3cg0_A 48 RCAPDL--RPDIALVDIMLCGALDGVETAARLAAGCNLPIIFITSSQD 93 (140)
T ss_dssp HHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEEECCCC
T ss_pred HHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEEecCCC
Confidence 344456 899999997653 34444443 3799988866543
No 332
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=26.85 E-value=2.9e+02 Score=25.49 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=53.2
Q ss_pred cEEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEeCCCC-hhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 6 AHILVYPFPTS--GHIIPLLDLTNRLLTLGLNVTVLITQNN-LPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 6 ~~Il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
.+++++..++. ....-+..+++.|.+.+.++.+++.... .+.++.. .+++.+. ++ .
T Consensus 242 ~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~-----~~~v~~~--~~-----~--------- 300 (412)
T 3otg_A 242 RPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSLDVSGLGEV-----PANVRLE--SW-----V--------- 300 (412)
T ss_dssp SCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC-----CTTEEEE--SC-----C---------
T ss_pred CCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCCChhhhccC-----CCcEEEe--CC-----C---------
Confidence 34555555554 3445567778888888999888887644 3333221 1244443 21 0
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++.. .|++|+... +.+..=|..+|+|+|.+
T Consensus 301 ----------~~~~~l~~----ad~~v~~~g-~~t~~Ea~a~G~P~v~~ 334 (412)
T 3otg_A 301 ----------PQAALLPH----VDLVVHHGG-SGTTLGALGAGVPQLSF 334 (412)
T ss_dssp ----------CHHHHGGG----CSEEEESCC-HHHHHHHHHHTCCEEEC
T ss_pred ----------CHHHHHhc----CcEEEECCc-hHHHHHHHHhCCCEEec
Confidence 12344543 499998754 23455677789999885
No 333
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=26.83 E-value=58 Score=28.24 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.|+++++..+.| =-.++|++|+++|++|+++...
T Consensus 1 m~k~vlVTGas~g---IG~~ia~~l~~~G~~V~~~~r~ 35 (247)
T 3dii_A 1 MNRGVIVTGGGHG---IGKQICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp -CCEEEEESTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 4566677765542 3468899999999999987654
No 334
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=26.79 E-value=1.1e+02 Score=23.70 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=25.2
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
+.+.+. .||+||+|.... .+..+++.+ ++|+|.++...
T Consensus 45 ~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~ 89 (153)
T 3cz5_A 45 RLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQ 89 (153)
T ss_dssp HHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCC
T ss_pred HHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCC
Confidence 445566 899999998754 344444332 68888876554
No 335
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=26.78 E-value=1.1e+02 Score=26.31 Aligned_cols=38 Identities=13% Similarity=-0.050 Sum_probs=28.8
Q ss_pred ccEEEEEcC-----CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPF-----PTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~-----~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++.+ ++. -..=+......|.+.|++|++++...
T Consensus 6 m~kv~ill~~~~~~~g~-~~~E~~~p~~~l~~ag~~v~~~s~~g 48 (232)
T 1vhq_A 6 MKKIGVILSGCGVYDGS-EIHEAVLTLLAISRSGAQAVCFAPDK 48 (232)
T ss_dssp CCEEEEECCSBSTTTSB-CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CCeEEEEEccCCCCCCe-eHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 789998877 543 44445666788888999999999763
No 336
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*
Probab=26.65 E-value=69 Score=28.85 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=24.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+|++. ++.|.+ -..++++|.++||+|+.++...
T Consensus 13 ~ilVt--GatG~i--G~~l~~~L~~~g~~V~~l~R~~ 45 (318)
T 2r6j_A 13 KILIF--GGTGYI--GNHMVKGSLKLGHPTYVFTRPN 45 (318)
T ss_dssp CEEEE--TTTSTT--HHHHHHHHHHTTCCEEEEECTT
T ss_pred eEEEE--CCCchH--HHHHHHHHHHCCCcEEEEECCC
Confidence 56554 344544 3578999999999999988764
No 337
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=26.59 E-value=2.4e+02 Score=24.71 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
.|+++++..+.| =-.++|+.|+++|.+|.+...
T Consensus 9 gKvalVTGas~G---IG~aia~~la~~Ga~Vvi~~~ 41 (255)
T 4g81_D 9 GKTALVTGSARG---LGFAYAEGLAAAGARVILNDI 41 (255)
T ss_dssp TCEEEETTCSSH---HHHHHHHHHHHTTCEEEECCS
T ss_pred CCEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEEC
Confidence 578888887765 346889999999999887654
No 338
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=26.59 E-value=2.4e+02 Score=24.69 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=24.9
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+++++..+.| =-.++|++|+++|++|+++...
T Consensus 31 gk~~lVTGas~G---IG~aia~~la~~G~~V~~~~r~ 64 (273)
T 3uf0_A 31 GRTAVVTGAGSG---IGRAIAHGYARAGAHVLAWGRT 64 (273)
T ss_dssp TCEEEEETTTSH---HHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEcCH
Confidence 456666665542 3468999999999999988844
No 339
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=26.43 E-value=2.7e+02 Score=22.79 Aligned_cols=141 Identities=16% Similarity=0.175 Sum_probs=73.7
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhc
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRH 351 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~ 351 (473)
..|.|-|-+||.+ +....++....|++++..+-..+-+- .+.|+.+.+ |+-..+ .
T Consensus 11 ~~P~V~IimGS~S--D~~v~~~a~~~l~~~gi~~ev~V~sa---------HR~p~~l~~-----------~~~~a~---~ 65 (173)
T 4grd_A 11 SAPLVGVLMGSSS--DWDVMKHAVAILQEFGVPYEAKVVSA---------HRMPDEMFD-----------YAEKAR---E 65 (173)
T ss_dssp SSCSEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT---------TTSHHHHHH-----------HHHHHT---T
T ss_pred CCCeEEEEeCcHh--HHHHHHHHHHHHHHcCCCEEEEEEcc---------ccCHHHHHH-----------HHHHHH---h
Confidence 5677888889886 67788889999999998765555543 456654322 111111 0
Q ss_pred cCccceeeccCc-h---hHHHHHhhCCeEecCcccccchhhHH---HHH--HHhcceEEeccCCC---CCCCHHHHHHHH
Q 042753 352 KAVGAFLTHCGW-N---SVLEGVSAGVVMLTWPMDADQYTNAQ---LLV--DQLGVGIRVGEGTR---NIPESDELARLL 419 (473)
Q Consensus 352 ~~v~~~ItHgG~-~---s~~eal~~GvP~l~~P~~~DQ~~na~---rv~--~~~G~G~~l~~~~~---~~~~~~~l~~~i 419 (473)
..++.+|.=.|. + ++.-+ ..-+|+|.+|.......-.. -+. -. |+.+..-- . +..++.-+...|
T Consensus 66 ~g~~ViIa~AG~aahLpgvvA~-~t~~PVIgVPv~~~~l~G~dsLlSivqMP~-Gvpvatv~--i~~~~a~NAallA~~I 141 (173)
T 4grd_A 66 RGLRAIIAGAGGAAHLPGMLAA-KTTVPVLGVPVASKYLKGVDSLHSIVQMPK-GVPVATFA--IGEAGAANAALFAVSI 141 (173)
T ss_dssp TTCSEEEEEEESSCCHHHHHHH-HCCSCEEEEEECCTTTTTHHHHHHHHCCCT-TSCCEECC--SSHHHHHHHHHHHHHH
T ss_pred cCCeEEEEeccccccchhhhee-cCCCCEEEEEcCCCCCCchhHHHHHHhCCC-CCCceEEe--cCCcchHHHHHHHHHH
Confidence 111125544442 2 33333 44788888887543221111 111 02 43322210 1 112233333222
Q ss_pred HHHhCCcHHHHHHHHHHHHHHHHH
Q 042753 420 AQSVDGPRRERLKARELSGAALSA 443 (473)
Q Consensus 420 ~~~l~~~~~~~~~a~~~~~~~~~~ 443 (473)
- -+.|+ .++++.++++++.++.
T Consensus 142 L-a~~d~-~l~~kl~~~r~~~~~~ 163 (173)
T 4grd_A 142 L-SGNSV-DYANRLAAFRVRQNEA 163 (173)
T ss_dssp H-TTSCH-HHHHHHHHHHHHHHHH
T ss_pred H-cCCCH-HHHHHHHHHHHHHHHH
Confidence 1 23565 8888888888887653
No 340
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=26.42 E-value=1.3e+02 Score=25.48 Aligned_cols=47 Identities=11% Similarity=-0.019 Sum_probs=34.6
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEE
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVY 307 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~ 307 (473)
+-+.+|+....++.++||..+|......+.+..+.++|++.+..+.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~ 62 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEE 62 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 44566765445688999999887544556778889999999987654
No 341
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=26.32 E-value=84 Score=23.69 Aligned_cols=39 Identities=21% Similarity=0.260 Sum_probs=25.3
Q ss_pred HHHhcCCCCCcEEEeCCCcc-------hHHHHHHHh-----CCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG-------WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~-------~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
+.+.+. .||+||.|.... .+..+.+.+ ++|+|.++....
T Consensus 41 ~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 41 TVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp HHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred HHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 345556 899999997653 344444332 689888876544
No 342
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=26.31 E-value=48 Score=28.98 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=22.5
Q ss_pred HhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEec
Q 042753 98 FKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~~ 133 (473)
+... +||+||...... .....-++.|||++.+..
T Consensus 56 i~~l--~PDLIi~~~~~~~~~~~~L~~~gipvv~~~~ 90 (260)
T 2q8p_A 56 VKKL--KPTHVLSVSTIKDEMQPFYKQLNMKGYFYDF 90 (260)
T ss_dssp HHHT--CCSEEEEEGGGHHHHHHHHHHHTSCCEEECC
T ss_pred HHhc--CCCEEEecCccCHHHHHHHHHcCCcEEEecC
Confidence 4446 899999864322 233445678999988643
No 343
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=26.31 E-value=1.2e+02 Score=26.43 Aligned_cols=37 Identities=14% Similarity=-0.006 Sum_probs=26.4
Q ss_pred cEEEEEcC-----CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPF-----PTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~-----~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+||+|+.. ++. -..=+......|.+.|++|+++++..
T Consensus 24 kkV~ill~~~~~~dG~-e~~E~~~p~~vL~~aG~~V~~~S~~~ 65 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGS-EIREAVLVMLELDRHNVNFKCFAPNK 65 (242)
T ss_dssp CEEEEECCCSSTTTSC-CHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CEEEEEEecCCCCCCe-eHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 68987765 332 33335556788888999999999863
No 344
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=26.27 E-value=61 Score=27.39 Aligned_cols=38 Identities=11% Similarity=-0.106 Sum_probs=24.1
Q ss_pred ccEEEEEcCCCCCC---hHH-HHHHHHHHHhC--CCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGH---IIP-LLDLTNRLLTL--GLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH---~~p-~l~La~~L~~r--Gh~Vt~~~~~ 42 (473)
|+|||++...-.++ ..- ...+++.|.++ ||+|+++--.
T Consensus 1 MmkiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~ 44 (212)
T 3r6w_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVG 44 (212)
T ss_dssp CCCEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 78998666554443 332 23456667666 9999887654
No 345
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=26.27 E-value=82 Score=26.80 Aligned_cols=35 Identities=11% Similarity=-0.004 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.|.++++..+ |-+ -..++++|.++||+|+++...
T Consensus 4 ~~k~vlVtGas-ggi--G~~~a~~l~~~G~~V~~~~r~ 38 (234)
T 2ehd_A 4 MKGAVLITGAS-RGI--GEATARLLHAKGYRVGLMARD 38 (234)
T ss_dssp CCCEEEESSTT-SHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCC-cHH--HHHHHHHHHHCCCEEEEEECC
Confidence 55555555433 323 468899999999999988764
No 346
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=26.21 E-value=1e+02 Score=22.80 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=25.0
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
+.+... .||+||.|...+ .+..+++.+ .+|.+.++...
T Consensus 43 ~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~ 89 (128)
T 1jbe_A 43 NKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEA 89 (128)
T ss_dssp HHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSC
T ss_pred HHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCc
Confidence 445556 899999998765 355555443 46777776543
No 347
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=26.18 E-value=40 Score=31.20 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=24.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++||+++-.+..| ..+|..|.++||+|+++...
T Consensus 4 ~mki~iiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGG-----HAFAAYLALKGQSVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred cCeEEEECCCHHH-----HHHHHHHHhCCCEEEEEeCC
Confidence 3689888655444 45788999999999988653
No 348
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=26.12 E-value=1.7e+02 Score=25.08 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=32.5
Q ss_pred hhhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEE
Q 042753 260 AHDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFV 306 (473)
Q Consensus 260 ~~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i 306 (473)
.+.+.+|+.. ...+++|..|+...........+.++|++.+..+.
T Consensus 21 ~~~l~~~~~~--~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~ 65 (229)
T 1fy2_A 21 LPLIANQLNG--RRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVT 65 (229)
T ss_dssp HHHHHHHHTT--CCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEE
T ss_pred HHHHHHHhcC--CCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 4557777764 67899999998644445667778899998887543
No 349
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase, hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F} PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Probab=26.11 E-value=62 Score=27.63 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
...+++.++..|+..-+..++..|.++|++|..+--+
T Consensus 12 ~~~vvllHG~~~~~~~~~~~~~~l~~~g~~v~~~D~~ 48 (267)
T 3sty_A 12 KKHFVLVHAAFHGAWCWYKIVALMRSSGHNVTALDLG 48 (267)
T ss_dssp CCEEEEECCTTCCGGGGHHHHHHHHHTTCEEEEECCT
T ss_pred CCeEEEECCCCCCcchHHHHHHHHHhcCCeEEEeccc
Confidence 3445555555677777789999999999998877655
No 350
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* 3q3c_A*
Probab=26.07 E-value=47 Score=29.91 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=26.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+||.|+-.+..| ..+|+.|.++||+|+++...
T Consensus 2 ~m~~I~iiG~G~mG-----~~~a~~l~~~G~~V~~~d~~ 35 (302)
T 2h78_A 2 HMKQIAFIGLGHMG-----APMATNLLKAGYLLNVFDLV 35 (302)
T ss_dssp -CCEEEEECCSTTH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEEeecHHH-----HHHHHHHHhCCCeEEEEcCC
Confidence 48899998666655 47789999999999988543
No 351
>3ip0_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; alpha beta, ATP-binding, folate biosynthesis, nucleotide-binding; HET: APC HHR HHS; 0.89A {Escherichia coli} PDB: 1eq0_A 1dy3_A* 1ex8_A* 1hka_A 1eqm_A* 1rao_A* 1rb0_A* 2f63_A 2f65_A 1q0n_A* 3ud5_A* 3ude_A* 3udv_A* 4f7v_A* 3kue_A 3hd2_A* 1f9h_A* 1g4c_A 1kbr_A 1hq2_A* ...
Probab=26.02 E-value=80 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.348 Sum_probs=23.6
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDV 303 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 303 (473)
+.|+++||-...+...++..+..|++...
T Consensus 2 iAyi~lGSNlGd~~~~l~~A~~~L~~~~~ 30 (158)
T 3ip0_A 2 VAYIAIGSNLASPLEQVNAALKALGDIPE 30 (158)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEecchhhHHHHHHHHHHHHHcCCC
Confidence 57999999987777888888888887543
No 352
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=26.00 E-value=88 Score=28.75 Aligned_cols=27 Identities=11% Similarity=0.198 Sum_probs=22.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 286 LTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
.+.+....+.+++.....+.||.+.+.
T Consensus 62 td~~Ra~dL~~a~~Dp~i~aI~~~rGG 88 (327)
T 4h1h_A 62 SIRSRVADIHEAFNDSSVKAILTVIGG 88 (327)
T ss_dssp CHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CHHHHHHHHHHHhhCCCCCEEEEcCCc
Confidence 456777889999999999999998775
No 353
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=25.93 E-value=1.5e+02 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCC
Q 042753 410 PESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGG 448 (473)
Q Consensus 410 ~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~g 448 (473)
++++++.+...++ +..+.+++-+.+++... .+|+
T Consensus 3 ~~~eq~~k~~~el----~~v~~n~~lL~EML~~~-~p~~ 36 (103)
T 1wrd_A 3 LGSEQIGKLRSEL----EMVSGNVRVMSEMLTEL-VPTQ 36 (103)
T ss_dssp SSSTTHHHHHHHH----HHHHHHHHHHHHHHHHS-CTTT
T ss_pred CCHHHHHHHHHHH----HHHHHHHHHHHHHHHhc-CCCC
Confidence 5566666666665 56777777777777643 4443
No 354
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=25.93 E-value=39 Score=29.99 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=27.1
Q ss_pred CccEEEEEcCCCCCChH--HHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 4 AGAHILVYPFPTSGHII--PLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~--p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+|.|||++- ||-. -...|.+.|.+.|++|+++.+...
T Consensus 3 ~m~~vLiV~----g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~ 41 (259)
T 3rht_A 3 AMTRVLYCG----DTSLETAAGYLAGLMTSWQWEFDYIPSHVG 41 (259)
T ss_dssp ---CEEEEE----SSCTTTTHHHHHHHHHHTTCCCEEECTTSC
T ss_pred CCceEEEEC----CCCchhHHHHHHHHHHhCCceEEEeccccc
Confidence 589999993 6633 456788889999999999998755
No 355
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Probab=25.93 E-value=83 Score=25.84 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++|++. ++.|-+ -..++++|.++||+|+.++..
T Consensus 4 ~~ilVt--GatG~i--G~~l~~~l~~~g~~V~~~~r~ 36 (206)
T 1hdo_A 4 KKIAIF--GATGQT--GLTTLAQAVQAGYEVTVLVRD 36 (206)
T ss_dssp CEEEEE--STTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred CEEEEE--cCCcHH--HHHHHHHHHHCCCeEEEEEeC
Confidence 466654 344433 467899999999999998865
No 356
>2hy5_A Putative sulfurtransferase DSRE; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_A
Probab=25.82 E-value=98 Score=23.78 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=28.4
Q ss_pred EEE-EEcCCCCCC--hHHHHHHHHHHHhCCCeE-EEEeCCCChh
Q 042753 7 HIL-VYPFPTSGH--IIPLLDLTNRLLTLGLNV-TVLITQNNLP 46 (473)
Q Consensus 7 ~Il-~~~~~~~GH--~~p~l~La~~L~~rGh~V-t~~~~~~~~~ 46 (473)
|++ ++..+-+|+ ....+.+|..+.+.||+| .++-..+-..
T Consensus 2 k~~iiv~~~p~~~~~~~~al~~a~a~~~~g~~v~~vff~~dGV~ 45 (130)
T 2hy5_A 2 KFALQINEGPYQHQASDSAYQFAKAALEKGHEIFRVFFYHDGVN 45 (130)
T ss_dssp EEEEEECSCTTTSTHHHHHHHHHHHHHHTTCEEEEEEECGGGGG
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCeeCEEEEechHHH
Confidence 554 455555544 456788899999999999 8888775443
No 357
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=25.80 E-value=72 Score=23.65 Aligned_cols=38 Identities=18% Similarity=0.010 Sum_probs=24.0
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecc
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPS 134 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~ 134 (473)
.+.+.+. +||+||.|.... .+..+++. -++|+|.++..
T Consensus 40 ~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 86 (127)
T 3i42_A 40 LHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGF 86 (127)
T ss_dssp HHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC
T ss_pred HHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECC
Confidence 3445567 899999998755 34444433 34777776544
No 358
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=25.74 E-value=2.7e+02 Score=25.57 Aligned_cols=41 Identities=7% Similarity=-0.067 Sum_probs=34.2
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCCC
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQNN 44 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~ 44 (473)
|.+ .++++-.|+.|-..-++.++...+++ |..|.|+.++..
T Consensus 27 ~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 27 QSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp CSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred cCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 345 57788889999999999999988886 899999998754
No 359
>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A
Probab=25.69 E-value=2.8e+02 Score=23.96 Aligned_cols=35 Identities=14% Similarity=0.095 Sum_probs=25.3
Q ss_pred ccEEEEEcCCC--CCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPT--SGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~--~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
..|+++++..+ +| + -.++|+.|+++|++|.+....
T Consensus 5 ~gK~alVTGaa~~~G-I--G~aiA~~la~~Ga~Vvi~~r~ 41 (256)
T 4fs3_A 5 ENKTYVIMGIANKRS-I--AFGVAKVLDQLGAKLVFTYRK 41 (256)
T ss_dssp TTCEEEEECCCSTTC-H--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEECCCCCch-H--HHHHHHHHHHCCCEEEEEECC
Confidence 35667777632 23 2 478999999999999988764
No 360
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=25.68 E-value=83 Score=24.62 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=27.5
Q ss_pred ccEEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEe
Q 042753 5 GAHILVYPFPTSGHIIPL-LDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~ 40 (473)
|+||+++=+..+|+..-+ ..|++.|.++|++|..+.
T Consensus 1 M~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~ 37 (147)
T 2hna_A 1 MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLH 37 (147)
T ss_dssp CCSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred CCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEec
Confidence 678877766677888664 567888888999988764
No 361
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}
Probab=25.61 E-value=3.1e+02 Score=23.29 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.|+++++..+.| =-.+++++|+++|++|.++....
T Consensus 7 ~k~vlITGas~g---IG~~~a~~l~~~G~~v~~~~~~~ 41 (255)
T 3icc_A 7 GKVALVTGASRG---IGRAIAKRLANDGALVAIHYGNR 41 (255)
T ss_dssp TCEEEETTCSSH---HHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCeEEEEeCCc
Confidence 466677766544 35688999999999998875543
No 362
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=25.57 E-value=2.5e+02 Score=32.36 Aligned_cols=109 Identities=13% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
|.+.-++++-.|+.|-..-.+.++...+.+|..|.|++.+...+.+..........++.+.......
T Consensus 381 ~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGvd~~~L~i~~~~~~e------------- 447 (1706)
T 3cmw_A 381 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGE------------- 447 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHH-------------
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCCCHHHeEEcCCCCHH-------------
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchH----------------------------HHHHHHhCCCcEEEe
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWT----------------------------QGLAAELGLPRVVFS 132 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~----------------------------~~~A~~~giP~v~~~ 132 (473)
.+...+.+++++. ++|+||.|...... ..+|+++|+|++.+.
T Consensus 448 ------~~l~~l~~lv~~~--~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~in 517 (1706)
T 3cmw_A 448 ------QALEICDALARSG--AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFIN 517 (1706)
T ss_dssp ------HHHHHHHHHHHHT--CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred ------HHHHHHHHHHHhc--CCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEe
No 363
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=25.50 E-value=32 Score=32.15 Aligned_cols=32 Identities=19% Similarity=0.076 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
+||.|+-.+..| ..+|..|.+.||+|+++...
T Consensus 16 ~kI~iIG~G~mG-----~~la~~L~~~G~~V~~~~r~ 47 (366)
T 1evy_A 16 NKAVVFGSGAFG-----TALAMVLSKKCREVCVWHMN 47 (366)
T ss_dssp EEEEEECCSHHH-----HHHHHHHTTTEEEEEEECSC
T ss_pred CeEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 388888665555 57899999999999988654
No 364
>1zl0_A Hypothetical protein PA5198; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; HET: TLA PEG; 1.10A {Pseudomonas aeruginosa} SCOP: c.8.10.1 c.23.16.7 PDB: 1zrs_A 2aum_A 2aun_A
Probab=25.50 E-value=1.3e+02 Score=27.42 Aligned_cols=76 Identities=13% Similarity=0.182 Sum_probs=49.6
Q ss_pred ccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh-ccCccceeeccC
Q 042753 284 YVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR-HKAVGAFLTHCG 362 (473)
Q Consensus 284 ~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~-~~~v~~~ItHgG 362 (473)
+..+.+....+.+++.....+.||.+.+.. . -.++.++++...+-. ++.+ ||=.+-
T Consensus 62 agtd~~Ra~dL~~a~~Dp~i~aI~~~rGGy--------g-------------a~rlLp~LD~~~i~~a~PK~--~iGySD 118 (311)
T 1zl0_A 62 AGTVEQRLEDLHNAFDMPDITAVWCLRGGY--------G-------------CGQLLPGLDWGRLQAASPRP--LIGFSD 118 (311)
T ss_dssp SSCHHHHHHHHHHHHHSTTEEEEEESCCSS--------C-------------GGGGTTTCCHHHHHHSCCCC--EEECGG
T ss_pred CCCHHHHHHHHHHHHhCCCCCEEEEccCCc--------C-------------HHHHhhccchhhhhccCCCE--EEEEch
Confidence 445677788899999999999999998863 1 112335555555444 5554 777777
Q ss_pred chhHHHHHh-hCCeEecCccc
Q 042753 363 WNSVLEGVS-AGVVMLTWPMD 382 (473)
Q Consensus 363 ~~s~~eal~-~GvP~l~~P~~ 382 (473)
...++-+++ .|++.+--|..
T Consensus 119 iTaL~~al~~~G~~t~hGp~~ 139 (311)
T 1zl0_A 119 ISVLLSAFHRHGLPAIHGPVA 139 (311)
T ss_dssp GHHHHHHHHHTTCCEEECCCG
T ss_pred hHHHHHHHHHcCCcEEECHhh
Confidence 677776665 36666655543
No 365
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=25.48 E-value=92 Score=23.13 Aligned_cols=35 Identities=11% Similarity=0.040 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
+||++++..|.|+-.-...+-+.+.++|.++.+-.
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~ 39 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEA 39 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEE
Confidence 46999998888888666777788888888765433
No 366
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=25.36 E-value=58 Score=28.35 Aligned_cols=33 Identities=15% Similarity=0.116 Sum_probs=23.0
Q ss_pred HhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEe
Q 042753 98 FKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~ 132 (473)
|... +||+||...... ....--++.|||++.+.
T Consensus 55 i~~l--~PDlIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (255)
T 3md9_A 55 ILAM--KPTMLLVSELAQPSLVLTQIASSGVNVVTVP 89 (255)
T ss_dssp HHTT--CCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHcc--CCCEEEEcCCcCchhHHHHHHHcCCcEEEeC
Confidence 4456 899999887643 23344467899999873
No 367
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2
Probab=25.31 E-value=55 Score=29.87 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
|++||+. ++.|-+ -..|+++|.++||+|+.+..
T Consensus 1 M~~vlVT--GatG~i--G~~l~~~L~~~g~~V~~~~r 33 (347)
T 1orr_A 1 MAKLLIT--GGCGFL--GSNLASFALSQGIDLIVFDN 33 (347)
T ss_dssp -CEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEEC
T ss_pred CcEEEEe--CCCchh--HHHHHHHHHhCCCEEEEEeC
Confidence 5676655 344433 35789999999999999875
No 368
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=25.25 E-value=71 Score=26.46 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 97 WFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
.+... .||+||.|...+ .+..+++.+ ++|+|.++..
T Consensus 43 ~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~ 85 (208)
T 1yio_A 43 HRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAH 85 (208)
T ss_dssp HCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESC
T ss_pred hhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCC
Confidence 34556 899999998765 455555443 6888887654
No 369
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=25.21 E-value=73 Score=24.78 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
+.+.+. .||+||.|.... .+..+++.+ ++|+|.++....
T Consensus 41 ~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~ 86 (155)
T 1qkk_A 41 AGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGD 86 (155)
T ss_dssp HTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGG
T ss_pred HHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 344555 899999997754 344444333 689988876544
No 370
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=25.19 E-value=96 Score=23.52 Aligned_cols=33 Identities=9% Similarity=0.230 Sum_probs=22.4
Q ss_pred CCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 104 PPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
.||+||.|.... .+..+.+.+ ++|+|.++...-
T Consensus 49 ~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 88 (143)
T 3jte_A 49 SIDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGD 88 (143)
T ss_dssp TCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 899999998755 344444433 588888765543
No 371
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=25.18 E-value=69 Score=27.55 Aligned_cols=28 Identities=11% Similarity=0.058 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCC--CChHHHHHHHHHHHhC
Q 042753 5 GAHILVYPFPTS--GHIIPLLDLTNRLLTL 32 (473)
Q Consensus 5 ~~~Il~~~~~~~--GH~~p~l~La~~L~~r 32 (473)
|++||+.-|.-+ --+||...++++|...
T Consensus 1 mk~VLvTGF~PF~~~~~NPS~~~v~~L~~~ 30 (220)
T 1a2z_A 1 MKKVLITGFEPFGGDSKNPTEQIAKYFDRK 30 (220)
T ss_dssp CEEEEEEEECCCTTCSCCHHHHHHHHHTTC
T ss_pred CCEEEEeeccCCCCCCCCcHHHHHHHhhcc
Confidence 667876654433 4679999999999876
No 372
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=25.18 E-value=82 Score=31.58 Aligned_cols=44 Identities=9% Similarity=-0.078 Sum_probs=38.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhh
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLL 48 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i 48 (473)
..+|++.+.++-.|-....-++..|..+|++|+.++.....+.+
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~i 141 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKI 141 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 57899999999999999999999999999999999887554443
No 373
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=25.16 E-value=46 Score=28.83 Aligned_cols=32 Identities=19% Similarity=0.247 Sum_probs=26.4
Q ss_pred HHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEEec
Q 042753 97 WFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~~~ 133 (473)
-++.. +.|+||.|.. +..+|+++|+|.+.+.+
T Consensus 149 ~l~~~--G~~vVVG~~~---~~~~A~~~Gl~~vlI~s 180 (225)
T 2pju_A 149 ELKAN--GTEAVVGAGL---ITDLAEEAGMTGIFIYS 180 (225)
T ss_dssp HHHHT--TCCEEEESHH---HHHHHHHTTSEEEESSC
T ss_pred HHHHC--CCCEEECCHH---HHHHHHHcCCcEEEECC
Confidence 34445 8999999954 78999999999999884
No 374
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=25.06 E-value=1e+02 Score=26.44 Aligned_cols=40 Identities=18% Similarity=0.091 Sum_probs=28.0
Q ss_pred CCccEEEEEcCCCCC----ChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 3 PAGAHILVYPFPTSG----HIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 3 ~~~~~Il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++|++|.++.....+ +..-...|++.|+++|+.|++=..+
T Consensus 7 ~~m~~V~V~ggsr~~~~~~~~~~A~~lg~~LA~~g~~lV~GGg~ 50 (216)
T 1ydh_A 7 SRFRKICVFCGSHSGHREVFSDAAIELGNELVKRKIDLVYGGGS 50 (216)
T ss_dssp CSCSEEEEECCSCCCSSHHHHHHHHHHHHHHHHTTCEEEECCCS
T ss_pred CCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEECCCc
Confidence 457888887654443 3456788889999999987655544
No 375
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=25.02 E-value=1.2e+02 Score=22.78 Aligned_cols=32 Identities=13% Similarity=-0.052 Sum_probs=21.6
Q ss_pred CCcEEEeCCCcc--hHHHHHHHh------CCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAEL------GLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~------giP~v~~~~~~ 135 (473)
.||+||.|...+ .|..+++.+ .+|.|.++...
T Consensus 52 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~ 91 (133)
T 2r25_B 52 NYNMIFMDVQMPKVDGLLSTKMIRRDLGYTSPIVALTAFA 91 (133)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHHSCCCSCEEEEESCC
T ss_pred CCCEEEEeCCCCCCChHHHHHHHHhhcCCCCCEEEEECCC
Confidence 799999998766 355444332 47877776553
No 376
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=24.97 E-value=2.3e+02 Score=26.43 Aligned_cols=89 Identities=13% Similarity=-0.001 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCC-ChHHHHHHHHHHHhCCCeEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHH
Q 042753 6 AHILVYPFPTSG-HIIPLLDLTNRLLTLGLNVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMR 84 (473)
Q Consensus 6 ~~Il~~~~~~~G-H~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~ 84 (473)
.+++++++++.+ .-..+..+.+.|.+.|.+|.+.+.....+.... .+++.+..+- +
T Consensus 221 ~~~Vlv~~Gs~~~~~~~~~~~~~al~~~~~~vv~~~g~~~~~~~~~------~~~v~~~~~~-------~---------- 277 (404)
T 3h4t_A 221 SPPVYVGFGSGPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDE------GDDCLVVGEV-------N---------- 277 (404)
T ss_dssp SCCEEECCTTSCCCTTHHHHHHHHHHHTTCCEEEECTTTTCCCSSC------CTTEEEESSC-------C----------
T ss_pred CCeEEEECCCCCCcHHHHHHHHHHHHhCCCEEEEEeCCcccccccC------CCCEEEecCC-------C----------
Confidence 356777877776 555677888888888999988876543221111 1244444211 1
Q ss_pred HHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 85 VLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 85 ~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
..+++. ..|++|+..-. .+..-|-..|+|.|.+
T Consensus 278 ---------~~~ll~----~~d~~v~~gG~-~t~~Eal~~GvP~v~~ 310 (404)
T 3h4t_A 278 ---------HQVLFG----RVAAVVHHGGA-GTTTAVTRAGAPQVVV 310 (404)
T ss_dssp ---------HHHHGG----GSSEEEECCCH-HHHHHHHHHTCCEEEC
T ss_pred ---------HHHHHh----hCcEEEECCcH-HHHHHHHHcCCCEEEc
Confidence 123343 46999988653 3445566689999886
No 377
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=24.83 E-value=47 Score=30.74 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=23.0
Q ss_pred HHHHHhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEE
Q 042753 94 LLDWFKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVF 131 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~ 131 (473)
+.++++ . +||+||...... ....+.+.+|||++.+
T Consensus 89 ~E~Ila-l--~PDLIi~~~~~~~~~~~~~~~~GiPvv~~ 124 (346)
T 2etv_A 89 LESLIT-L--QPDVVFITYVDRXTAXDIQEXTGIPVVVL 124 (346)
T ss_dssp HHHHHH-H--CCSEEEEESCCHHHHHHHHHHHTSCEEEE
T ss_pred HHHHhc-C--CCCEEEEeCCccchHHHHHHhcCCcEEEE
Confidence 444444 5 899999865422 2234567789999886
No 378
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=24.77 E-value=1.7e+02 Score=21.56 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=28.5
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
.|||-| +.+++.+++++..++..+.+++..++..
T Consensus 3 qifvvf----ssdpeilkeivreikrqgvrvvllysdq 36 (162)
T 2l82_A 3 QIFVVF----SSDPEILKEIVREIKRQGVRVVLLYSDQ 36 (162)
T ss_dssp EEEEEE----ESCHHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred eEEEEe----cCCHHHHHHHHHHHHhCCeEEEEEecCc
Confidence 466655 4578999999999999999999999876
No 379
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=24.69 E-value=1.2e+02 Score=24.79 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=32.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|..|.+...++.|-..-+..|++.|.++|+.|..+....
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 555667778888999999999999999999998888653
No 380
>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}
Probab=24.63 E-value=61 Score=28.92 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
+|+||.++-.+..| ..+|+.|.+.||+|+++.
T Consensus 2 ~~m~i~iiG~G~~G-----~~~a~~l~~~g~~V~~~~ 33 (295)
T 1yb4_A 2 NAMKLGFIGLGIMG-----SPMAINLARAGHQLHVTT 33 (295)
T ss_dssp --CEEEECCCSTTH-----HHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEEccCHHH-----HHHHHHHHhCCCEEEEEc
Confidence 46789888655555 357888999999998765
No 381
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}
Probab=24.62 E-value=3.9e+02 Score=24.16 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh--CCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT--LGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~--rGh~Vt~~~~~~ 43 (473)
+++|++.- +.|-+ -..|+++|.+ +||+|+.+....
T Consensus 10 ~~~vlVTG--atG~I--G~~l~~~L~~~~~g~~V~~~~r~~ 46 (362)
T 3sxp_A 10 NQTILITG--GAGFV--GSNLAFHFQENHPKAKVVVLDKFR 46 (362)
T ss_dssp TCEEEEET--TTSHH--HHHHHHHHHHHCTTSEEEEEECCC
T ss_pred CCEEEEEC--CCCHH--HHHHHHHHHhhCCCCeEEEEECCC
Confidence 46666653 33333 3578999999 999999998643
No 382
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=24.60 E-value=54 Score=25.24 Aligned_cols=41 Identities=10% Similarity=0.037 Sum_probs=26.3
Q ss_pred HHHHHHhc-CCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 93 ALLDWFKS-HPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 93 ~l~~~l~~-~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+..+.+. . .||+||.|.... .+..+++.+ ++|+|.++...
T Consensus 57 ~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~ 105 (146)
T 4dad_A 57 QIVQRTDGLD--AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDA 105 (146)
T ss_dssp HHTTCHHHHT--TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCC
T ss_pred HHHHHHhcCC--CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCC
Confidence 34444444 6 899999998765 344444333 68888876554
No 383
>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}
Probab=24.55 E-value=42 Score=30.02 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=25.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||.|+-.+..| ..+|+.|.++||+|++....
T Consensus 1 M~~I~iiG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 33 (287)
T 3pdu_A 1 MTTYGFLGLGIMG-----GPMAANLVRAGFDVTVWNRN 33 (287)
T ss_dssp CCCEEEECCSTTH-----HHHHHHHHHHTCCEEEECSS
T ss_pred CCeEEEEccCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 6788888665555 46789999999999988654
No 384
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=24.55 E-value=37 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|+||+++-. |.+ -..+++.|.++|++|+++...
T Consensus 6 ~~~v~I~G~---G~i--G~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGL---GRF--GGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECC---SHH--HHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECC---CHH--HHHHHHHHHHCCCEEEEEeCC
Confidence 567877754 433 356789999999999988754
No 385
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=24.51 E-value=79 Score=26.05 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=29.6
Q ss_pred ccEEEEEcCCCCCChHHHH-HHHHHHHh-CCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLL-DLTNRLLT-LGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l-~La~~L~~-rGh~Vt~~~~~~~ 44 (473)
|+||+++-....|+..-+. .+++.|.+ .|++|.++.....
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~ 45 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEA 45 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhC
Confidence 8899877766678766544 46777777 8999998876643
No 386
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=24.50 E-value=1.2e+02 Score=22.85 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=16.8
Q ss_pred HHhcCCCCCcEEEeCCCcc--hHHHHHHH
Q 042753 97 WFKSHPSPPVAILSDFFLG--WTQGLAAE 123 (473)
Q Consensus 97 ~l~~~~~~pD~VV~D~~~~--~~~~~A~~ 123 (473)
.+... .||+||.|.... .+..+++.
T Consensus 49 ~l~~~--~~dlvllD~~lp~~~g~~~~~~ 75 (140)
T 3c97_A 49 AYQNR--QFDVIIMDIQMPVMDGLEAVSE 75 (140)
T ss_dssp HHHHS--CCSEEEECTTCCSSCHHHHHHH
T ss_pred HHhcC--CCCEEEEeCCCCCCcHHHHHHH
Confidence 34556 899999998765 35544443
No 387
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.50 E-value=80 Score=23.99 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=23.5
Q ss_pred HhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 98 FKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
+... +||+||.|.... .+..+++.+ .+|.|.++...
T Consensus 44 l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~ 86 (137)
T 3cfy_A 44 IERS--KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHG 86 (137)
T ss_dssp HHHH--CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSC
T ss_pred HHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecC
Confidence 4445 899999998765 355544443 57777776543
No 388
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*
Probab=24.48 E-value=49 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=26.1
Q ss_pred CCCCc-cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAG-AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~-~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++.+ .|.++++. +.|.+ -..++++|.++||+|+++...
T Consensus 1 m~~~l~~k~vlVTG-asggi--G~~~a~~l~~~G~~V~~~~r~ 40 (258)
T 3afn_B 1 MFPDLKGKRVLITG-SSQGI--GLATARLFARAGAKVGLHGRK 40 (258)
T ss_dssp -CGGGTTCEEEETT-CSSHH--HHHHHHHHHHTTCEEEEEESS
T ss_pred CCcCCCCCEEEEeC-CCChH--HHHHHHHHHHCCCEEEEECCC
Confidence 56654 34555554 34433 457899999999999988765
No 389
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=24.41 E-value=68 Score=24.21 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=24.2
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
.+.++.. .||+||.|.... .+..+++.+ ++|+|.++...
T Consensus 44 ~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 44 ERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp HHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCC
T ss_pred HHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCc
Confidence 3344556 899999998755 344444433 57776665443
No 390
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=24.39 E-value=3.3e+02 Score=24.66 Aligned_cols=114 Identities=5% Similarity=0.065 Sum_probs=61.7
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccC
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKA 353 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~ 353 (473)
++..|.+|++.. ..+.++ ..+..++.+...+. +.-.+.+.+....-++-..-|-...++|..++
T Consensus 4 rvgiiG~G~~~~-------~~~~~l-~~~~~lvav~d~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 67 (337)
T 3ip3_A 4 KICVIGSSGHFR-------YALEGL-DEECSITGIAPGVP--------EEDLSKLEKAISEMNIKPKKYNNWWEMLEKEK 67 (337)
T ss_dssp EEEEECSSSCHH-------HHHTTC-CTTEEEEEEECSST--------TCCCHHHHHHHHTTTCCCEECSSHHHHHHHHC
T ss_pred EEEEEccchhHH-------HHHHhc-CCCcEEEEEecCCc--------hhhHHHHHHHHHHcCCCCcccCCHHHHhcCCC
Confidence 356677776542 234444 45666666665431 11112333222111221234567888998876
Q ss_pred ccceeeccCchh----HHHHHhhCCeEec-Cccccc--chhhHHHHHHHhcce--EEec
Q 042753 354 VGAFLTHCGWNS----VLEGVSAGVVMLT-WPMDAD--QYTNAQLLVDQLGVG--IRVG 403 (473)
Q Consensus 354 v~~~ItHgG~~s----~~eal~~GvP~l~-~P~~~D--Q~~na~rv~~~~G~G--~~l~ 403 (473)
+.+++--.-..+ +.+|+.+|++++| -|+..+ +-.-...++++.|+- +.+.
T Consensus 68 vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~ 126 (337)
T 3ip3_A 68 PDILVINTVFSLNGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAM 126 (337)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEEC
T ss_pred CCEEEEeCCcchHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEec
Confidence 666665444333 7889999999888 687653 333333333344755 4444
No 391
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=24.27 E-value=85 Score=29.15 Aligned_cols=40 Identities=18% Similarity=0.161 Sum_probs=34.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+.-++++-.++.|-..-++.++..+...|..|.|++.+..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 4456788889999999999999999999999999998754
No 392
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=24.15 E-value=1.2e+02 Score=20.73 Aligned_cols=36 Identities=11% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Q 042753 408 NIPESDELARLLAQSVDGPRRERLKARELSGAALSA 443 (473)
Q Consensus 408 ~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~ 443 (473)
...|.++|.++|+++|.+.+-..-..++++..+.+.
T Consensus 10 ~~Psd~ei~~~I~~IL~~aDL~tvT~K~VR~~Le~~ 45 (70)
T 1q1v_A 10 KPPTDEELKETIKKLLASANLEEVTMKQICKKVYEN 45 (70)
T ss_dssp CCCCHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHH
Confidence 468899999999999986611222235566666543
No 393
>3qbc_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; protein-inhibitor complex, ferredoxin-like fold; HET: B55; 1.65A {Staphylococcus aureus}
Probab=24.09 E-value=94 Score=25.22 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=24.5
Q ss_pred cEEEEEeCCcccCCHHHHHHHHHHHHhCC
Q 042753 274 SVVYVCFGSRYVLTAKQIHELAAALEKTD 302 (473)
Q Consensus 274 ~~V~vs~Gs~~~~~~~~~~~~~~al~~~~ 302 (473)
..+|+++||-...+...++..+++|.+.+
T Consensus 5 ~~v~i~LGSNlGd~~~~l~~A~~~L~~~~ 33 (161)
T 3qbc_A 5 IQAYLGLGSNIGDRESQLNDAIKILNEYD 33 (161)
T ss_dssp EEEEEEEEECSSSHHHHHHHHHHHHHHST
T ss_pred cEEEEEEecCccCHHHHHHHHHHHHhcCC
Confidence 47999999998777888888899998754
No 394
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=24.05 E-value=62 Score=29.46 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=22.2
Q ss_pred HhcCCCCCcEEEeCCCcc-hHHHHHHHhCCCcEEEe
Q 042753 98 FKSHPSPPVAILSDFFLG-WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~-~~~~~A~~~giP~v~~~ 132 (473)
|... +||+||...... ....--++.|||++.+.
T Consensus 80 i~~l--~PDlIi~~~~~~~~~~~~L~~~Gipvv~~~ 113 (326)
T 3psh_A 80 LLAL--KPDVVFVTNYAPSEMIKQISDVNIPVVAIS 113 (326)
T ss_dssp HHHT--CCSEEEEETTCCHHHHHHHHTTTCCEEEEC
T ss_pred HHcc--CCCEEEEeCCCChHHHHHHHHcCCCEEEEe
Confidence 4446 899999875432 23344467799999874
No 395
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.04 E-value=51 Score=27.29 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=71.0
Q ss_pred CCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhc
Q 042753 272 DESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRH 351 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~ 351 (473)
.-|.|-|-+||.+ +....++....|++.+..+-..+-+- .+.|+.+.+ |+.+.+ -..
T Consensus 12 ~~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~dv~V~Sa---------HR~p~~l~~-----------~~~~a~-~~g 68 (183)
T 1o4v_A 12 HVPRVGIIMGSDS--DLPVMKQAAEILEEFGIDYEITIVSA---------HRTPDRMFE-----------YAKNAE-ERG 68 (183)
T ss_dssp --CEEEEEESCGG--GHHHHHHHHHHHHHTTCEEEEEECCT---------TTCHHHHHH-----------HHHHTT-TTT
T ss_pred CCCeEEEEeccHH--HHHHHHHHHHHHHHcCCCeEEEEEcc---------cCCHHHHHH-----------HHHHHH-hCC
Confidence 4577888888876 67778888888988888765555543 446654322 111100 011
Q ss_pred cCccceeeccCch----hHHHHHhhCCeEecCcccccc--hhhHH-HHHHHh--cc--eEEeccCCCCCCCHHHHHHHHH
Q 042753 352 KAVGAFLTHCGWN----SVLEGVSAGVVMLTWPMDADQ--YTNAQ-LLVDQL--GV--GIRVGEGTRNIPESDELARLLA 420 (473)
Q Consensus 352 ~~v~~~ItHgG~~----s~~eal~~GvP~l~~P~~~DQ--~~na~-rv~~~~--G~--G~~l~~~~~~~~~~~~l~~~i~ 420 (473)
.+| +|.=.|.- ++..++ .-+|+|.+|..... -..+. -+. .. |+ ++..- .+..++.-+...|-
T Consensus 69 ~~V--iIa~AG~aa~LpgvvA~~-t~~PVIgVP~~~~~l~G~dsLlSiv-qmP~GvpVatV~I---d~~~nAa~lAaqIl 141 (183)
T 1o4v_A 69 IEV--IIAGAGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIV-QMPGGVPVATVAI---NNAKNAGILAASIL 141 (183)
T ss_dssp CCE--EEEEEESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHH-TCCTTCCCEECCT---TCHHHHHHHHHHHH
T ss_pred CcE--EEEecCcccccHHHHHhc-cCCCEEEeeCCCCCCCcHHHHHHHh-cCCCCCeeEEEec---CCchHHHHHHHHHH
Confidence 222 55544432 333333 46778888875421 11111 111 21 42 22211 23334444444443
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHH
Q 042753 421 QSVDGPRRERLKARELSGAALSA 443 (473)
Q Consensus 421 ~~l~~~~~~~~~a~~~~~~~~~~ 443 (473)
-+.|+ .++++.+.++...++.
T Consensus 142 -a~~d~-~l~~kL~~~r~~~~~~ 162 (183)
T 1o4v_A 142 -GIKYP-EIARKVKEYKERMKRE 162 (183)
T ss_dssp -HTTCH-HHHHHHHHHHHHHHHH
T ss_pred -hcCCH-HHHHHHHHHHHHHHHH
Confidence 33554 7777777777776643
No 396
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=24.03 E-value=1e+02 Score=26.38 Aligned_cols=39 Identities=15% Similarity=0.115 Sum_probs=24.3
Q ss_pred CccEEEEEc-CCCC----CChHHH--HHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYP-FPTS----GHIIPL--LDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~-~~~~----GH~~p~--l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+|||++. .|-. +-++-. ..+++.|.+.||+|.++-..
T Consensus 24 ~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~ 69 (218)
T 3rpe_A 24 AMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVD 69 (218)
T ss_dssp CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 489998555 6643 233432 24556666789999887653
No 397
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=24.03 E-value=1e+02 Score=27.87 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=29.1
Q ss_pred CCCC-ccEEEEEcCCCC--CCh-HHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 1 MLPA-GAHILVYPFPTS--GHI-IPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 1 ~~~~-~~~Il~~~~~~~--GH~-~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
|.++ |+|++++.-|.. |.. .-...+...|.++|+++++..+...
T Consensus 3 m~~~~m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~t~~~ 50 (304)
T 3s40_A 3 MTKTKFEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILHTKEQ 50 (304)
T ss_dssp --CCSCSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEECCST
T ss_pred CccCCCCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEEccCc
Confidence 5444 889877766644 443 3345677888889999998876543
No 398
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=23.99 E-value=1.3e+02 Score=22.44 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=30.1
Q ss_pred CccEEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEe
Q 042753 4 AGAHILVYPFPTSGHIIP-LLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~ 40 (473)
.|+||++++..|.|.-.- ...+-+.+.++|.++.+-.
T Consensus 20 ~~kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~ 57 (113)
T 1tvm_A 20 SKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQ 57 (113)
T ss_dssp SSEEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cccEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 378999999999999884 6777888888999865544
No 399
>3ga2_A Endonuclease V; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Bacillus subtilis}
Probab=23.98 E-value=81 Score=27.56 Aligned_cols=40 Identities=20% Similarity=0.065 Sum_probs=26.2
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcc-------hHHHHHHHhCCCcEEEe
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLG-------WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~-------~~~~~A~~~giP~v~~~ 132 (473)
.+.+++++...+||++++|-.-. .+..+.-.+|+|+|.+.
T Consensus 98 ~ll~al~~L~~~PdlllvDG~GiaHPRr~GlAsHlGv~l~~PtIGVA 144 (246)
T 3ga2_A 98 LIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIA 144 (246)
T ss_dssp HHHHHHHHCSSCCSCEEEEBCSSSSTTSCCHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHHhcCCCCCEEEEcCcEEecCCCcchhheeeeecCCCEEeee
Confidence 34444555433899999997743 23355566789999973
No 400
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=23.83 E-value=87 Score=25.07 Aligned_cols=38 Identities=13% Similarity=0.115 Sum_probs=26.4
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhC-C-CcEEEEEe
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKT-D-VDFVYCVR 310 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~-~-~~~i~~~~ 310 (473)
..+|+|+-||........+..+.+.+++. + ..|.+.+-
T Consensus 25 ~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afl 64 (156)
T 1tjn_A 25 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFA 64 (156)
T ss_dssp EEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEEC
T ss_pred cCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEe
Confidence 57999999997544456677788888753 3 45655543
No 401
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.83 E-value=45 Score=25.98 Aligned_cols=34 Identities=21% Similarity=0.209 Sum_probs=25.7
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..||+++-.+.. -..+++.|.++||+|+++....
T Consensus 7 ~~~viIiG~G~~-----G~~la~~L~~~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRV-----GSLLGEKLLASDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHH-----HHHHHHHHHHTTCCEEEEESCH
T ss_pred CCCEEEECcCHH-----HHHHHHHHHHCCCCEEEEECCH
Confidence 367887755333 4578999999999999998763
No 402
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=23.83 E-value=95 Score=22.21 Aligned_cols=37 Identities=22% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~ 134 (473)
+.+.+. +||+||.|.... .+..+.+. -++|+|.++..
T Consensus 39 ~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 84 (119)
T 2j48_A 39 DQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGE 84 (119)
T ss_dssp HHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESS
T ss_pred HHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCC
Confidence 344555 899999997654 33333332 36888887654
No 403
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=23.76 E-value=50 Score=32.60 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++++. +||++|.+. ....+|+++|||++.+
T Consensus 363 el~~~i~~~--~pDl~ig~~---~~r~~a~k~gip~~~i 396 (511)
T 2xdq_B 363 VVGDAIARV--EPAAIFGTQ---MERHVGKRLNIPCGVI 396 (511)
T ss_dssp HHHHHHHHH--CCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHHhc--CCCEEEecc---chHHHHHhcCCCeEec
Confidence 455667777 899999874 4778889999999875
No 404
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=23.75 E-value=1e+02 Score=28.40 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=23.1
Q ss_pred cCCHHHHHHHHHHHHhCCCcEEEEEeCC
Q 042753 285 VLTAKQIHELAAALEKTDVDFVYCVREP 312 (473)
Q Consensus 285 ~~~~~~~~~~~~al~~~~~~~i~~~~~~ 312 (473)
..+.+....+.+++.....+.||.+.+.
T Consensus 62 g~d~~Ra~dL~~a~~Dp~i~aI~~~rGG 89 (336)
T 3sr3_A 62 GSIQERAKELNALIRNPNVSCIMSTIGG 89 (336)
T ss_dssp SCHHHHHHHHHHHHHCTTEEEEEESCCC
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcccc
Confidence 3456778889999999999999999876
No 405
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=23.61 E-value=75 Score=24.58 Aligned_cols=41 Identities=24% Similarity=0.262 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecch
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSG 135 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~ 135 (473)
...+.+++. .||+||.|.... .+..+.+.+ ++|+|.++...
T Consensus 52 ~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 52 AALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp HHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCC
T ss_pred HHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccC
Confidence 344556666 899999998755 344444433 57877776554
No 406
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=23.59 E-value=67 Score=27.00 Aligned_cols=32 Identities=16% Similarity=0.183 Sum_probs=23.1
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
||++. ++.|.+ -..|+++|.++||+|+.++..
T Consensus 2 kilVt--GatG~i--G~~l~~~L~~~g~~V~~~~R~ 33 (224)
T 3h2s_A 2 KIAVL--GATGRA--GSAIVAEARRRGHEVLAVVRD 33 (224)
T ss_dssp EEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEESC
T ss_pred EEEEE--cCCCHH--HHHHHHHHHHCCCEEEEEEec
Confidence 55443 344444 368899999999999999865
No 407
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=23.57 E-value=1.2e+02 Score=22.52 Aligned_cols=37 Identities=11% Similarity=0.160 Sum_probs=22.5
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh------CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL------GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~------giP~v~~~~~ 134 (473)
+.+.+. .||+||.|.... .+..+++.+ ..|.|.+.+.
T Consensus 44 ~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~ 88 (132)
T 3lte_A 44 IKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSG 88 (132)
T ss_dssp HHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECC
T ss_pred HHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeC
Confidence 345567 899999998765 355555433 3455555443
No 408
>1cbk_A Protein (7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase); transferase; HET: ROI; 2.02A {Haemophilus influenzae} SCOP: d.58.30.1
Probab=23.57 E-value=95 Score=25.16 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=24.3
Q ss_pred EEEEEeCCcccCCHHHHHHHHHHHHhCCC
Q 042753 275 VVYVCFGSRYVLTAKQIHELAAALEKTDV 303 (473)
Q Consensus 275 ~V~vs~Gs~~~~~~~~~~~~~~al~~~~~ 303 (473)
.+|+++||-...+...++..+++|++.+.
T Consensus 3 ~~~i~LGSNlGd~~~~l~~A~~~L~~~~~ 31 (160)
T 1cbk_A 3 TAYIALGSNLNTPVEQLHAALKAISQLSN 31 (160)
T ss_dssp EEEEEEEECSSCHHHHHHHHHHHHHTSTT
T ss_pred EEEEEEeccchHHHHHHHHHHHHHhhCCC
Confidence 58999999987788888889999988643
No 409
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=23.53 E-value=98 Score=25.90 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecchH
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPSGA 136 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~~~ 136 (473)
+.+... .||+||.|...+ .+..+++.+ ++|+|.++....
T Consensus 40 ~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~ 85 (225)
T 1kgs_A 40 YMALNE--PFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSD 85 (225)
T ss_dssp HHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCH
T ss_pred HHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCC
Confidence 344556 899999998765 355444433 689888876543
No 410
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Probab=23.45 E-value=55 Score=32.49 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcEEE
Q 042753 93 ALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRVVF 131 (473)
Q Consensus 93 ~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v~~ 131 (473)
.+.+++++. +||++|.+. ....+|+++|||++.+
T Consensus 340 el~~~i~~~--~pDL~ig~~---~~~~~a~~~giP~~~i 373 (525)
T 3aek_B 340 EVEKAIEAA--APELILGTQ---MERNIAKKLGLPCAVI 373 (525)
T ss_dssp HHHHHHHHH--CCSEEEECH---HHHHHHHHHTCCEEEC
T ss_pred HHHHHHhhc--CCCEEEecc---hhHHHHHHcCCCEEEe
Confidence 345667777 899999884 4778899999999874
No 411
>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}
Probab=23.43 E-value=75 Score=28.25 Aligned_cols=34 Identities=24% Similarity=0.115 Sum_probs=25.6
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 41 (473)
+.|+++++..+.| =-.++|++|+++|++|+++..
T Consensus 24 ~~k~~lVTGas~G---IG~~ia~~la~~G~~V~~~~r 57 (281)
T 3v2h_A 24 MTKTAVITGSTSG---IGLAIARTLAKAGANIVLNGF 57 (281)
T ss_dssp TTCEEEEETCSSH---HHHHHHHHHHHTTCEEEEECC
T ss_pred CCCEEEEeCCCcH---HHHHHHHHHHHCCCEEEEEeC
Confidence 4567777765543 346899999999999988765
No 412
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=23.42 E-value=1.3e+02 Score=23.17 Aligned_cols=32 Identities=34% Similarity=0.393 Sum_probs=22.0
Q ss_pred CCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
.||+||.|...+ .+..+++.+ ++|.|.++...
T Consensus 61 ~~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~ 101 (149)
T 1i3c_A 61 RPNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCC
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCC
Confidence 799999998765 355444433 57888876654
No 413
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=23.26 E-value=1.1e+02 Score=28.80 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=66.6
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCC--CcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTD--VDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~ 350 (473)
.+++.|..| +. +..+.++.+.+ ..++-++..+. + -...+.++. ++. -|....+++.
T Consensus 8 ~rv~VvG~G-~g-------~~h~~a~~~~~~~~elvav~~~~~--------~-~a~~~a~~~---gv~--~~~~~~~l~~ 65 (372)
T 4gmf_A 8 QRVLIVGAK-FG-------EMYLNAFMQPPEGLELVGLLAQGS--------A-RSRELAHAF---GIP--LYTSPEQITG 65 (372)
T ss_dssp EEEEEECST-TT-------HHHHHTTSSCCTTEEEEEEECCSS--------H-HHHHHHHHT---TCC--EESSGGGCCS
T ss_pred CEEEEEehH-HH-------HHHHHHHHhCCCCeEEEEEECCCH--------H-HHHHHHHHh---CCC--EECCHHHHhc
Confidence 346666555 32 23466776653 45555555442 1 112344333 232 2445667777
Q ss_pred ccCccceee----ccCch--hHHHHHhhCCeEec-CcccccchhhHHHHHHHhcceEEec
Q 042753 351 HKAVGAFLT----HCGWN--SVLEGVSAGVVMLT-WPMDADQYTNAQLLVDQLGVGIRVG 403 (473)
Q Consensus 351 ~~~v~~~It----HgG~~--s~~eal~~GvP~l~-~P~~~DQ~~na~rv~~~~G~G~~l~ 403 (473)
..++.++.| |++.+ -+.+||.+|++++| -|+..|+-.-..+++++.|+=..+.
T Consensus 66 ~~D~v~i~~p~~~h~~~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~ 125 (372)
T 4gmf_A 66 MPDIACIVVRSTVAGGAGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWIN 125 (372)
T ss_dssp CCSEEEECCC--CTTSHHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CCCEEEEECCCcccchhHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 777644443 56543 47889999999998 8888887777777777778887777
No 414
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=23.19 E-value=1.4e+02 Score=25.23 Aligned_cols=40 Identities=18% Similarity=0.012 Sum_probs=28.0
Q ss_pred Cc-cEEEEEcCC---------CCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AG-AHILVYPFP---------TSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~-~~Il~~~~~---------~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
.| +||+++... ..-...=+....+.|.+.|++|++++...
T Consensus 3 ~m~~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~ 52 (224)
T 1u9c_A 3 AMSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQG 52 (224)
T ss_dssp -CCCEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 35 689877762 22233556677788888999999999863
No 415
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=23.10 E-value=88 Score=25.42 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=31.9
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
|+.|++.-.+|.|--.-...|++.|...|+.+.++.
T Consensus 1 M~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 1 MKIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 567888889999999999999999998999998884
No 416
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Probab=23.09 E-value=48 Score=30.45 Aligned_cols=35 Identities=26% Similarity=0.195 Sum_probs=25.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+++|++. ++.|.+ -..|+++|.++||+|+.+....
T Consensus 25 ~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~r~~ 59 (351)
T 3ruf_A 25 PKTWLIT--GVAGFI--GSNLLEKLLKLNQVVIGLDNFS 59 (351)
T ss_dssp CCEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEECCS
T ss_pred CCeEEEE--CCCcHH--HHHHHHHHHHCCCEEEEEeCCC
Confidence 4666654 344544 3578999999999999998643
No 417
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=23.07 E-value=77 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=23.9
Q ss_pred CCcEEE-eCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 104 PPVAIL-SDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV-~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.||+|| .|...- -++.=|.++|||+|.++.+.
T Consensus 114 ~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvDTn 147 (241)
T 2xzm_B 114 EPRVLIVTDPRSDFQAIKEASYVNIPVIALCDSD 147 (241)
T ss_dssp CCSEEEESCTTTTHHHHHHHTTTTCCEEECCCSS
T ss_pred CCCEEEEECCCcchHHHHHHHHhCCCEEEEecCC
Confidence 789887 454433 57788999999999986553
No 418
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.05 E-value=74 Score=27.85 Aligned_cols=40 Identities=13% Similarity=0.062 Sum_probs=31.0
Q ss_pred CccEEEEE-c-CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 4 AGAHILVY-P-FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 4 ~~~~Il~~-~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
.+++|+.+ . -+|.|=..-...||..|+ +|++|.++-.+..
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 45566544 3 567799999999999999 9999999877644
No 419
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=23.03 E-value=49 Score=30.99 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEe
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLI 40 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 40 (473)
+||+++-.+--| +.+|..|+++|++|+++=
T Consensus 2 m~V~IVGaGpaG-----l~~A~~L~~~G~~v~v~E 31 (412)
T 4hb9_A 2 MHVGIIGAGIGG-----TCLAHGLRKHGIKVTIYE 31 (412)
T ss_dssp CEEEEECCSHHH-----HHHHHHHHHTTCEEEEEC
T ss_pred CEEEEECcCHHH-----HHHHHHHHhCCCCEEEEe
Confidence 578777544333 788999999999999984
No 420
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=22.99 E-value=2.1e+02 Score=25.66 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=47.9
Q ss_pred eEEEEeCCCChhhhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHHHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc
Q 042753 35 NVTVLITQNNLPLLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKFMRVLRELHYPALLDWFKSHPSPPVAILSDFFL 114 (473)
Q Consensus 35 ~Vt~~~~~~~~~~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~ 114 (473)
...+++++.+.-..+.+ |++...+.... .+..++. .....+.+.+++. +..+|+++...
T Consensus 184 ~~~v~~H~af~Yf~~~y-------Gl~~~~~~~~~-~~~eps~-----------~~l~~l~~~ik~~--~v~~if~e~~~ 242 (294)
T 3hh8_A 184 KLIVTSEGCFKYFSKAY-------GVPSAYIWEIN-TEEEGTP-----------DQISSLIEKLKVI--KPSALFVESSV 242 (294)
T ss_dssp CCEEEEESCCHHHHHHH-------TCCEEEEESSC-CSCCCCH-----------HHHHHHHHHHHHS--CCSCEEEETTS
T ss_pred cEEEEECChHHHHHHHc-------CCceeeccccC-CCCCCCH-----------HHHHHHHHHHHHc--CCCEEEEeCCC
Confidence 44556677787777777 55555432111 1122221 2334566778888 99999999876
Q ss_pred c--hHHHHHHHhCCCcE
Q 042753 115 G--WTQGLAAELGLPRV 129 (473)
Q Consensus 115 ~--~~~~~A~~~giP~v 129 (473)
. .+..+|+..|+|.+
T Consensus 243 ~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 243 DRRPMETVSKDSGIPIY 259 (294)
T ss_dssp CSHHHHHHHHHHCCCEE
T ss_pred CcHHHHHHHHHhCCcEE
Confidence 6 45689999999988
No 421
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=22.89 E-value=1.2e+02 Score=22.51 Aligned_cols=32 Identities=34% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~ 135 (473)
.||+||.|.... .+..+++. -++|+|.++...
T Consensus 55 ~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~ 95 (140)
T 1k68_A 55 RPDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSI 95 (140)
T ss_dssp CCSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCC
T ss_pred CCcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCC
Confidence 899999998765 34444433 358888876654
No 422
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=22.87 E-value=91 Score=19.91 Aligned_cols=30 Identities=20% Similarity=0.256 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 042753 428 RERLKARELSGAALSAVVKGGSSDRDLNDFIKRI 461 (473)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~~~~ 461 (473)
.|+++...++.+++. -|+|+..+..|.+.|
T Consensus 6 efkqrlaaiktrlqa----lggseaelaafekei 35 (73)
T 2a3d_A 6 EFKQRLAAIKTRLQA----LGGSEAELAAFEKEI 35 (73)
T ss_dssp HHHHHHHHHHHHHHH----CSSGGGTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----hcCcHHHHHHHHHHH
Confidence 688889999999863 355665555554444
No 423
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=22.83 E-value=3e+02 Score=26.26 Aligned_cols=91 Identities=14% Similarity=0.056 Sum_probs=51.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHH-HhCCCeEEEEeCCCChhh-hhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHHH
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRL-LTLGLNVTVLITQNNLPL-LDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLKF 82 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~-i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~ 82 (473)
++|++++..+. -..++++.| .+.|-+|..+++...... .+..... ...+.....=+
T Consensus 307 Gkrv~i~g~~~-----~~~~l~~~L~~elG~~vv~~~~~~~~~~~~~~~l~~-l~~~~~v~~~~---------------- 364 (437)
T 3aek_A 307 GKSLFMFPDSQ-----LEIPLARFLARECGMKTTEIATPFLHKAIMAPDLAL-LPSNTALTEGQ---------------- 364 (437)
T ss_dssp TCEEEECSSSS-----CHHHHHHHHHHTTCCEEEEEEESCCCHHHHHHHHTT-SBTTCEEEEEC----------------
T ss_pred CCEEEEEcCch-----HHHHHHHHHHHHcCCEEEEEEecCCCHHHHHHHHHh-cCCCCEEEeCC----------------
Confidence 56888775542 346788888 778999999987533222 1221110 00111111000
Q ss_pred HHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcchHHHHHHHhCCCcE
Q 042753 83 MRVLRELHYPALLDWFKSHPSPPVAILSDFFLGWTQGLAAELGLPRV 129 (473)
Q Consensus 83 ~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~~~~~~A~~~giP~v 129 (473)
-...+.+++++. +||++|.+.. .....++.|+|+.
T Consensus 365 -------d~~e~~~~i~~~--~pDliig~~~---~~~p~~~~G~P~~ 399 (437)
T 3aek_A 365 -------DLEAQLDRHEAI--NPDLTVCGLG---LANPLEAKGHATK 399 (437)
T ss_dssp -------CHHHHHHHHHHH--CCSEEEECHH---HHHHHHTTTCCEE
T ss_pred -------CHHHHHHHHhcc--CCCEEEeCCc---cccHHHHCCCCEE
Confidence 012344667777 9999998843 3345666899965
No 424
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=22.83 E-value=1.4e+02 Score=34.87 Aligned_cols=88 Identities=15% Similarity=0.107 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChh--hhhhhccCCCCCCeeEEEcCCCCCCCCCChhhHHH
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLP--LLDSLNANHPSTSLQSLVLPQPKWPAGSPATRLLK 81 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~--~i~~~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~ 81 (473)
.+..|+++-.|+.|-..-.++++.+..++|+.|.|+..+.... ..++.+. .. ..+.+.. +. +.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~-dl-~~l~v~~-~~-------~~----- 1490 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-DI-DNLLCSQ-PD-------TG----- 1490 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTC-CT-TTCEEEC-CS-------SH-----
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCC-Cc-hhceeec-CC-------hH-----
Confidence 4567788889999999999999999999999999999885422 2222211 00 1222221 10 11
Q ss_pred HHHHHHHHhhHHHHHHHhcCCCCCcEEEeCCCc
Q 042753 82 FMRVLRELHYPALLDWFKSHPSPPVAILSDFFL 114 (473)
Q Consensus 82 ~~~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~ 114 (473)
+ .+...+++++++. +||+||.|.+.
T Consensus 1491 -----E-~~l~~~~~lvr~~--~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1491 -----E-QALEICDALARSG--AVDVIVVDSVA 1515 (2050)
T ss_dssp -----H-HHHHHHHHHHHHT--CCSEEEESCGG
T ss_pred -----H-HHHHHHHHHHhcC--CCCEEEEcChh
Confidence 1 2234455667778 99999999984
No 425
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=22.59 E-value=3.2e+02 Score=22.35 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=76.0
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhcc
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHK 352 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~ 352 (473)
++.|-|-+||.+ +....++....|++.+..+-..+-+- .+.|+.+.+ |+-..+ -...
T Consensus 12 ~~~V~IimGS~S--D~~v~~~a~~~L~~~Gi~~ev~V~Sa---------HR~p~~~~~-----------~~~~a~-~~g~ 68 (174)
T 3kuu_A 12 GVKIAIVMGSKS--DWATMQFAADVLTTLNVPFHVEVVSA---------HRTPDRLFS-----------FAEQAE-ANGL 68 (174)
T ss_dssp CCCEEEEESSGG--GHHHHHHHHHHHHHTTCCEEEEECCT---------TTCHHHHHH-----------HHHHTT-TTTC
T ss_pred CCcEEEEECcHH--HHHHHHHHHHHHHHcCCCEEEEEEcc---------cCCHHHHHH-----------HHHHHH-hCCC
Confidence 456777788876 67778889999999988765555543 456654332 111100 0112
Q ss_pred CccceeeccCchhHHHHH---hhCCeEecCcccccch-hhHHHHH----HHhcceEE-eccCCC---CCCCHHHHHHHHH
Q 042753 353 AVGAFLTHCGWNSVLEGV---SAGVVMLTWPMDADQY-TNAQLLV----DQLGVGIR-VGEGTR---NIPESDELARLLA 420 (473)
Q Consensus 353 ~v~~~ItHgG~~s~~eal---~~GvP~l~~P~~~DQ~-~na~rv~----~~~G~G~~-l~~~~~---~~~~~~~l~~~i~ 420 (473)
+| +|.=.|.-.-+-.. ..-+|+|.+|...-.. .....+. -. |+.+. +. + +..++.-+...|-
T Consensus 69 ~V--iIa~AG~aa~LpgvvA~~t~~PVIgVP~~~~~l~G~dsLlS~vqmP~-GvPVatV~---I~~a~~~nAa~lAa~IL 142 (174)
T 3kuu_A 69 HV--IIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPR-GIPVGTLA---IGKAGAANAALLAAQIL 142 (174)
T ss_dssp SE--EEEEEESSCCHHHHHHHTCSSCEEEEEECCTTTTTHHHHHHHHTCCT-TSCCEECC---SSHHHHHHHHHHHHHHH
T ss_pred cE--EEEECChhhhhHHHHHhccCCCEEEeeCCCCCCCCHHHHHHhhhCCC-CCeeEEEE---eCCccchHHHHHHHHHH
Confidence 33 66665543322222 2358999999864221 2222221 12 44221 21 1 1233444444443
Q ss_pred HHhCCcHHHHHHHHHHHHHHHHHH
Q 042753 421 QSVDGPRRERLKARELSGAALSAV 444 (473)
Q Consensus 421 ~~l~~~~~~~~~a~~~~~~~~~~~ 444 (473)
. +.|+ .++++.+++++..++.+
T Consensus 143 a-~~d~-~l~~kl~~~r~~~~~~v 164 (174)
T 3kuu_A 143 A-LHDT-ELAGRLAHWRQSQTDDV 164 (174)
T ss_dssp H-TTCH-HHHHHHHHHHHHHHHHH
T ss_pred c-CCCH-HHHHHHHHHHHHHHHHH
Confidence 2 3565 89999999988887543
No 426
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=22.56 E-value=96 Score=27.60 Aligned_cols=39 Identities=18% Similarity=0.162 Sum_probs=31.5
Q ss_pred cEEEEEc---CCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYP---FPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~---~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+|.+|++ ..+.|-=.-..+|+..|..||+.||..=.+++
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY 64 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY 64 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence 5777777 44567778899999999999999999876644
No 427
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=22.51 E-value=91 Score=25.45 Aligned_cols=39 Identities=23% Similarity=0.192 Sum_probs=30.4
Q ss_pred ccEEEEEcCCCC---CChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTS---GHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..+|+++|.-+. --..+...|++.|.++|.+|.|..+|-
T Consensus 22 A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 63 (184)
T 1d4o_A 22 ANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPV 63 (184)
T ss_dssp CSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 467888873322 235688999999999999999999984
No 428
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=22.46 E-value=2.1e+02 Score=21.88 Aligned_cols=62 Identities=18% Similarity=0.131 Sum_probs=37.8
Q ss_pred hCCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Q 042753 372 AGVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVDGPRRERLKARELSGAA 440 (473)
Q Consensus 372 ~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~ 440 (473)
..+|+|++--..|. .......+. |+--.+. ..++.++|..+|+.++... .++...+++++.+
T Consensus 74 ~~~pii~ls~~~~~-~~~~~~~~~-g~~~~l~----kP~~~~~L~~~i~~~~~~~-~~~~~~~~~~~~~ 135 (155)
T 1qkk_A 74 PDLPMILVTGHGDI-PMAVQAIQD-GAYDFIA----KPFAADRLVQSARRAEEKR-RLVMENRSLRRAA 135 (155)
T ss_dssp TTSCEEEEECGGGH-HHHHHHHHT-TCCEEEE----SSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCh-HHHHHHHhc-CCCeEEe----CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 47888887544443 333444424 7655554 3689999999999998764 4444433443333
No 429
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=22.46 E-value=88 Score=23.61 Aligned_cols=37 Identities=5% Similarity=-0.073 Sum_probs=25.2
Q ss_pred HHHHHhc-CCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEe
Q 042753 94 LLDWFKS-HPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFS 132 (473)
Q Consensus 94 l~~~l~~-~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~ 132 (473)
..+.+.+ . .||+||.|.... .+..+.+.+ ++|+|.++
T Consensus 51 al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 51 FFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp HHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEE
Confidence 3445566 6 899999998765 455555554 57777765
No 430
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=22.44 E-value=66 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=21.7
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~ 134 (473)
+.+++. +||+||.|.... .+..+++. -++|+|.++..
T Consensus 40 ~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 40 EQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp HHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred HHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEEecC
Confidence 344556 899999998755 23333322 36888877554
No 431
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=22.40 E-value=80 Score=24.44 Aligned_cols=39 Identities=18% Similarity=0.076 Sum_probs=21.0
Q ss_pred HHHHHhc-CCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 94 LLDWFKS-HPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 94 l~~~l~~-~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
..+.++. . .||+||+|.... .+..+.+.+ ++|+|.++..
T Consensus 41 a~~~l~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 41 ALAFLEADN--TVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp HHHHHHTTC--CCSEEEECC------CHHHHHHHHHHCTTSEEEEC---
T ss_pred HHHHHhccC--CCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCC
Confidence 3445555 6 899999998754 234333333 6888776554
No 432
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=22.39 E-value=1.2e+02 Score=27.32 Aligned_cols=38 Identities=11% Similarity=0.006 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCC-C---hHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 6 AHILVYPFPTSG-H---IIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~G-H---~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+||+++..+-.+ | +.....++++|.++||+|+.+.+..
T Consensus 14 ~~v~vl~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~ 55 (317)
T 4eg0_A 14 GKVAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAE 55 (317)
T ss_dssp CEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTT
T ss_pred ceEEEEECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 677777654332 2 3467899999999999999998543
No 433
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 1.74A {Klebsiella pneumoniae subsp}
Probab=22.37 E-value=1e+02 Score=25.77 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=28.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.++++.++..|+-.-+..+++.|.++|+.|...-..
T Consensus 33 p~vv~~HG~~g~~~~~~~~~~~l~~~G~~v~~~d~~ 68 (241)
T 3f67_A 33 PIVIVVQEIFGVHEHIRDLCRRLAQEGYLAIAPELY 68 (241)
T ss_dssp EEEEEECCTTCSCHHHHHHHHHHHHTTCEEEEECTT
T ss_pred CEEEEEcCcCccCHHHHHHHHHHHHCCcEEEEeccc
Confidence 456666667788888999999999999998777653
No 434
>3e35_A Uncharacterized protein SCO1997; alpha/beta/alpha structure, actinobacteria-specific protein, conserved protein, unknown function; 2.20A {Streptomyces coelicolor}
Probab=22.36 E-value=1.6e+02 Score=27.05 Aligned_cols=182 Identities=10% Similarity=0.052 Sum_probs=71.2
Q ss_pred CCcEEEEEeCCcccCCH-HHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhh
Q 042753 272 DESVVYVCFGSRYVLTA-KQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILR 350 (473)
Q Consensus 272 ~~~~V~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~ 350 (473)
++++++++ |-.-.... .+...+++-.++.+++-|+.++.-. -..|-. .+-.|.. -.-..+++.
T Consensus 104 ~~~~llL~-G~eP~~~w~~f~~avl~~a~~~gV~~vv~Lggip--------~~vpHt-----RP~~V~~--~at~~el~~ 167 (325)
T 3e35_A 104 GAPFLFLS-GPEPDVEWERFAAAVGQIVERLGVRLSVSFHGIP--------MGVPHT-----RPVGITP--HGSRTDLVP 167 (325)
T ss_dssp CCEEEEEE-EECCSSCHHHHHHHHHHHHHHTTEEEEEEEEEEE--------ESCCTT-----SCCCEEE--EESCGGGCC
T ss_pred CCcEEEEE-CCCCcchHHHHHHHHHHHHHHcCCCEEEEEeCcc--------CCCCCC-----CCceeEE--EeCCHHHHH
Confidence 45665554 65545555 5566688888889998777766521 001100 0011221 111222222
Q ss_pred ccCc--cceeeccCchhH--HHHHhhCCeEecC----cccccc---hhhHHHH----HHHhcceEE--eccCCCCCCCHH
Q 042753 351 HKAV--GAFLTHCGWNSV--LEGVSAGVVMLTW----PMDADQ---YTNAQLL----VDQLGVGIR--VGEGTRNIPESD 413 (473)
Q Consensus 351 ~~~v--~~~ItHgG~~s~--~eal~~GvP~l~~----P~~~DQ---~~na~rv----~~~~G~G~~--l~~~~~~~~~~~ 413 (473)
.-.. +-+=.-+|..++ .+|...|+|.+++ |+..-| |.-|..+ .+.+|+-+- +. .-.-.++
T Consensus 168 ~~~~~~~~~~gp~Gi~glL~~~~~~~Gi~a~~l~~~vPhYla~~p~P~AA~alL~~L~~~~gl~vp~~~~---~L~e~Ae 244 (325)
T 3e35_A 168 GHRSPFEEAQVPGSAEALVEYRLAQAGHDVLGVAAHVPHYVARSAYPDAALTVLEAITAATGLVLPGIAH---SLRTDAH 244 (325)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHTTCCEEEEEEEEEGGGTTSCCHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHH
T ss_pred hhccccccCCCcccHHHHHHHHHHHCCCCeEEEEEEcCccccCCCCHHHHHHHHHHHHHHhCCCCCcchH---HHHHHHH
Confidence 1111 001123444444 4567789998775 443334 4444433 333344433 33 2334456
Q ss_pred HHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHH--h----------cCCChHHHHHHHHHHHHhhccCCCccc
Q 042753 414 ELARLLAQSVDG-PRRERLKARELSGAALSAV--V----------KGGSSDRDLNDFIKRINELKSGKNLTA 472 (473)
Q Consensus 414 ~l~~~i~~~l~~-~~~~~~~a~~~~~~~~~~~--~----------~~gs~~~~~~~~~~~~~~~~~~~~~~~ 472 (473)
++++.|+++..+ ++...+-.+.|-+..-... . +--|.+....+|.+||.+.....+++|
T Consensus 245 ~~e~~i~el~~~~~~E~~~~V~~LE~~yD~~~~~~~~~~~l~~~~~~ps~del~~efErfL~~~~~~~~~~~ 316 (325)
T 3e35_A 245 RTQTEIDRQIQEGDEELIALVQGLEHQYDAAAGAETRGNMLAEPVEIPSADEIGREFERFLAEREGDGKLAA 316 (325)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCC----------------------------------------
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhhccccccccccCCCCCHHHHHHHHHHHHHhcCCCcchhH
Confidence 777777777764 3244444444443331110 0 011345666788888877655554443
No 435
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=22.34 E-value=2e+02 Score=28.80 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=44.0
Q ss_pred HHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcC--CCeEeecCc-cHHHh-------hhccCccceeecc
Q 042753 292 HELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAG--RGYVIRGWS-QQVAI-------LRHKAVGAFLTHC 361 (473)
Q Consensus 292 ~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~--~nv~v~~~~-pq~~l-------L~~~~v~~~ItHg 361 (473)
+.+++.|++.+.+.++-+.+.. . ..+.+.... +.+....-. -|.+. ...-..+++++|.
T Consensus 8 ~~lv~~L~~~GV~~vfg~PG~~---------~--~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~ts 76 (590)
T 1v5e_A 8 LAVMKILESWGADTIYGIPSGT---------L--SSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSG 76 (590)
T ss_dssp HHHHHHHHHTTCCEEEECCCTT---------T--HHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECT
T ss_pred HHHHHHHHHcCCCEEEEecCCc---------h--HHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCc
Confidence 4467788888888877777642 0 122222221 123221111 11111 1112334588888
Q ss_pred C------chhHHHHHhhCCeEecCc
Q 042753 362 G------WNSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 362 G------~~s~~eal~~GvP~l~~P 380 (473)
| .+.+.||-+.++|+|++-
T Consensus 77 GpG~~N~~~gl~~A~~~~vPll~It 101 (590)
T 1v5e_A 77 GPGASHLINGLYDAAMDNIPVVAIL 101 (590)
T ss_dssp THHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred ChHHHHHHHHHHHHHhcCCCEEEEc
Confidence 8 668999999999999874
No 436
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=22.25 E-value=83 Score=26.00 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCC---CChHHHH-HHHHHHHhCC--CeEEEEeCC
Q 042753 5 GAHILVYPFPTS---GHIIPLL-DLTNRLLTLG--LNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p~l-~La~~L~~rG--h~Vt~~~~~ 42 (473)
|+||+++..... |...-+. .+++.|.++| ++|.++--.
T Consensus 1 Mmkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~ 44 (201)
T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA 44 (201)
T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETT
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEecc
Confidence 678886654443 6555544 4566677766 898887654
No 437
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=22.15 E-value=1.5e+02 Score=24.71 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=29.3
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|+||+++.+++.. ..-+......|.+.|++|++++...
T Consensus 2 ~~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~ 39 (205)
T 2ab0_A 2 SASALVCLAPGSE-ETEAVTTIDLLVRGGIKVTTASVAS 39 (205)
T ss_dssp CCEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CcEEEEEEcCCCc-HHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4589888877663 4456667788989999999999764
No 438
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.14 E-value=1.1e+02 Score=26.34 Aligned_cols=40 Identities=25% Similarity=0.204 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh----CCCcEEEecch
Q 042753 94 LLDWFKSHPSPPVAILSDFFLG--WTQGLAAEL----GLPRVVFSPSG 135 (473)
Q Consensus 94 l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~----giP~v~~~~~~ 135 (473)
..+.+... .||+||.|...+ .+..+++.+ ++|+|.++...
T Consensus 73 al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 73 GLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp HHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESCC
T ss_pred HHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 34455667 899999998876 345555443 68888876654
No 439
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}
Probab=22.11 E-value=2.4e+02 Score=24.92 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTL--GLNVTVLITQN 43 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~ 43 (473)
++|++. ++.|.+ -..|+++|.++ ||+|+.+....
T Consensus 3 ~~vlVt--GatG~i--G~~l~~~L~~~~~g~~V~~~~r~~ 38 (312)
T 2yy7_A 3 PKILII--GACGQI--GTELTQKLRKLYGTENVIASDIRK 38 (312)
T ss_dssp CCEEEE--TTTSHH--HHHHHHHHHHHHCGGGEEEEESCC
T ss_pred ceEEEE--CCccHH--HHHHHHHHHHhCCCCEEEEEcCCC
Confidence 455544 344544 35788999998 99999987653
No 440
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=22.10 E-value=4.1e+02 Score=23.45 Aligned_cols=69 Identities=19% Similarity=0.214 Sum_probs=47.8
Q ss_pred ccchhhHHHHHHHhc-ceEEeccCC---CCCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q 042753 383 ADQYTNAQLLVDQLG-VGIRVGEGT---RNIPESDELARLLAQSVDGPRRERLKARELSGAALSAVVKGGSSDRDLNDFI 458 (473)
Q Consensus 383 ~DQ~~na~rv~~~~G-~G~~l~~~~---~~~~~~~~l~~~i~~~l~~~~~~~~~a~~~~~~~~~~~~~~gs~~~~~~~~~ 458 (473)
.-|...+.++.+++| +|+..+++- ..++++++=.+-++.+-. +|| +.+-+++.+..+...+||+|+
T Consensus 156 ~qQ~rL~~KLkERLGYLGVYYKR~p~~F~rnl~~~ErqeLl~~Lk~---~YR-------~IlL~YF~~d~~~Nq~ID~FV 225 (289)
T 1r8j_A 156 SQQRDLAQRLQERLGYLGVYYKRDPDRFLRNLPAYESQKLHQAMQT---SYR-------EIVLSYFSPNSNLNQSIDNFV 225 (289)
T ss_dssp GHHHHHHHHHHHHHEEEEEEECCCGGGSTTTSCHHHHHHHHHHHHH---HHH-------HHHHHHTSTTCCHHHHHHHHH
T ss_pred hHHhhHHHHHHHHhcccceeeeeCHHHHHHhCCHHHHHHHHHHHHH---HHH-------HHHHHHhCCchHHHHHHHHHH
Confidence 456778899999999 588887522 356777776666666552 455 445555567777888888888
Q ss_pred HHH
Q 042753 459 KRI 461 (473)
Q Consensus 459 ~~~ 461 (473)
+..
T Consensus 226 N~a 228 (289)
T 1r8j_A 226 NMA 228 (289)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 441
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=22.07 E-value=1e+02 Score=25.37 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=27.8
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLT-LGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 43 (473)
|+||+++.+++....-- ......|.+ .|++|++++...
T Consensus 1 m~~i~ill~~g~~~~e~-~~~~~~l~~a~~~~v~~vs~~~ 39 (188)
T 2fex_A 1 MTRIAIALAQDFADWEP-ALLAAAARSYLGVEIVHATPDG 39 (188)
T ss_dssp CCEEEEECCTTBCTTSS-HHHHHHHHHHSCCEEEEEETTS
T ss_pred CcEEEEEeCCCchHHHH-HHHHHHHhhcCCceEEEEeCCC
Confidence 67999888887654332 234567777 899999999864
No 442
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=22.06 E-value=43 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.++||.|+-.+..| ..+|+.|.+.||+|++....
T Consensus 6 ~~~~I~iIG~G~mG-----~~~a~~l~~~G~~V~~~dr~ 39 (303)
T 3g0o_A 6 TDFHVGIVGLGSMG-----MGAARSCLRAGLSTWGADLN 39 (303)
T ss_dssp -CCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSC
T ss_pred CCCeEEEECCCHHH-----HHHHHHHHHCCCeEEEEECC
Confidence 35789888554444 57899999999999988543
No 443
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=22.05 E-value=1.4e+02 Score=25.95 Aligned_cols=44 Identities=18% Similarity=0.054 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHH----hCCCcEEEecchHH
Q 042753 92 PALLDWFKSHPSPPVAILSDFFLG--WTQGLAAE----LGLPRVVFSPSGAF 137 (473)
Q Consensus 92 ~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~----~giP~v~~~~~~~~ 137 (473)
+.+.++.+++ .||++|+-.... .+..-|++ -|||+|.++-.+..
T Consensus 54 ~~~~~~~~~~--~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~ 103 (283)
T 1qv9_A 54 EMALDIAEDF--EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGL 103 (283)
T ss_dssp HHHHHHHHHH--CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGG
T ss_pred HHhhhhhhhc--CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcch
Confidence 3344455788 999998765543 45555655 49999999877654
No 444
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=21.96 E-value=33 Score=32.17 Aligned_cols=57 Identities=14% Similarity=0.173 Sum_probs=37.8
Q ss_pred hhhccCccceeeccCchhHHHHHhh----CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHh
Q 042753 348 ILRHKAVGAFLTHCGWNSVLEGVSA----GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSV 423 (473)
Q Consensus 348 lL~~~~v~~~ItHgG~~s~~eal~~----GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l 423 (473)
+-..+++ +|+=||=||++.|... ++|++.+= .| .+.. -..++.+++.+++++++
T Consensus 105 ~~~~~Dl--vI~lGGDGT~L~aa~~~~~~~~PvlGiN-----------------~G-~LGF--Lt~~~~~~~~~~l~~vl 162 (365)
T 3pfn_A 105 ISNQIDF--IICLGGDGTLLYASSLFQGSVPPVMAFH-----------------LG-SLGF--LTPFSFENFQSQVTQVI 162 (365)
T ss_dssp CTTTCSE--EEEESSTTHHHHHHHHCSSSCCCEEEEE-----------------SS-SCTT--TCCEESTTHHHHHHHHH
T ss_pred cccCCCE--EEEEcChHHHHHHHHHhccCCCCEEEEc-----------------CC-CCcc--ceeecHHHHHHHHHHHH
Confidence 3355665 9999999999999763 57888772 22 1111 22455667777888877
Q ss_pred CCc
Q 042753 424 DGP 426 (473)
Q Consensus 424 ~~~ 426 (473)
+++
T Consensus 163 ~g~ 165 (365)
T 3pfn_A 163 EGN 165 (365)
T ss_dssp HSC
T ss_pred cCC
Confidence 653
No 445
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=21.95 E-value=1.1e+02 Score=26.82 Aligned_cols=39 Identities=18% Similarity=0.065 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCC--CChHHHHH-HHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTS--GHIIPLLD-LTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~--GH~~p~l~-La~~L~~rGh~Vt~~~~~ 42 (473)
.|+||+++....+ |...-+.. +++.|.+.|++|.++--.
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~ 74 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPS 74 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCT
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhh
Confidence 4789987765543 44434333 566677789999887543
No 446
>2d1p_A TUSD, hypothetical UPF0163 protein YHEN; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=21.88 E-value=1.6e+02 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=30.0
Q ss_pred ccEEE-EEcCCCCCChHHH--HHHHHHHHhCCCeE-EEEeCCCChh
Q 042753 5 GAHIL-VYPFPTSGHIIPL--LDLTNRLLTLGLNV-TVLITQNNLP 46 (473)
Q Consensus 5 ~~~Il-~~~~~~~GH~~p~--l~La~~L~~rGh~V-t~~~~~~~~~ 46 (473)
.+|++ ++..+-+|+-... +.+|+.+.+.||+| .++-..+...
T Consensus 12 ~~~~~ivv~~~Pyg~~~a~~Al~~A~aala~g~eV~~VFf~~DGV~ 57 (140)
T 2d1p_A 12 SMRFAIVVTGPAYGTQQASSAFQFAQALIADGHELSSVFFYREGVY 57 (140)
T ss_dssp CCEEEEEECSCSSSSSHHHHHHHHHHHHHHTTCEEEEEEECGGGGG
T ss_pred ceEEEEEEcCCCCCcHHHHHHHHHHHHHHHCCCccCEEEEechHHH
Confidence 46775 5556667776664 56699999999999 8777764433
No 447
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Probab=21.84 E-value=57 Score=29.69 Aligned_cols=38 Identities=29% Similarity=0.250 Sum_probs=22.7
Q ss_pred CCCCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 1 MLPAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 1 ~~~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.-++++||+. ++.|-+- ..|+++|.++||+|+.+...
T Consensus 1 ~~~~~~~vlVT--GatGfIG--~~l~~~L~~~G~~V~~~~r~ 38 (337)
T 2c29_D 1 MGSQSETVCVT--GASGFIG--SWLVMRLLERGYTVRATVRD 38 (337)
T ss_dssp -----CEEEET--TTTSHHH--HHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCCEEEEE--CCchHHH--HHHHHHHHHCCCEEEEEECC
Confidence 33345665443 3445443 57899999999999877654
No 448
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*
Probab=21.83 E-value=98 Score=25.97 Aligned_cols=35 Identities=23% Similarity=0.182 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLL-TLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~ 42 (473)
|+|.++++. +.|-+ -..++++|. ++||+|+.+...
T Consensus 4 mmk~vlVtG-asg~i--G~~~~~~l~~~~g~~V~~~~r~ 39 (221)
T 3r6d_A 4 MYXYITILG-AAGQI--AQXLTATLLTYTDMHITLYGRQ 39 (221)
T ss_dssp SCSEEEEES-TTSHH--HHHHHHHHHHHCCCEEEEEESS
T ss_pred eEEEEEEEe-CCcHH--HHHHHHHHHhcCCceEEEEecC
Confidence 556333333 33333 368899999 899999998765
No 449
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=21.60 E-value=1.3e+02 Score=22.67 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=19.2
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL 124 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~ 124 (473)
.+.+.+. .||+||.|.... .+..+++.+
T Consensus 48 l~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l 77 (143)
T 2qv0_A 48 LKFLQHN--KVDAIFLDINIPSLDGVLLAQNI 77 (143)
T ss_dssp HHHHHHC--CCSEEEECSSCSSSCHHHHHHHH
T ss_pred HHHHHhC--CCCEEEEecCCCCCCHHHHHHHH
Confidence 3445566 899999998765 456666554
No 450
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=21.57 E-value=1.2e+02 Score=25.61 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=24.6
Q ss_pred HHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 96 DWFKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 96 ~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
+.+... .||+||.|...+ .+..+++.+ ++|+|.++..
T Consensus 45 ~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 45 RSATEN--RPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp HHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECC
T ss_pred HHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 344556 899999998765 355444433 6888877544
No 451
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=21.55 E-value=1.2e+02 Score=23.42 Aligned_cols=33 Identities=12% Similarity=0.075 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCCChH--------HHHHHHHHHHhCCCeEE
Q 042753 5 GAHILVYPFPTSGHII--------PLLDLTNRLLTLGLNVT 37 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~--------p~l~La~~L~~rGh~Vt 37 (473)
|+|.++++.|-.|... -+-..|..|.++||.+.
T Consensus 7 ~M~~IYIagPysg~~~n~~~~n~~~~~r~A~~l~~~G~ip~ 47 (125)
T 1t1j_A 7 HMRKIFLACPYSHADAEVVEQRFRACNEVAATIVRAGHVVF 47 (125)
T ss_dssp CCCEEEEECCCCCSSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhheeEECCCCCCcchHHHHHHHHHHHHHHHHHHCCCeee
Confidence 4566677777777632 34556777889999654
No 452
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=21.51 E-value=85 Score=27.27 Aligned_cols=35 Identities=11% Similarity=-0.007 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|.|+++++..+. - =-..+++.|+++|++|+++...
T Consensus 1 m~k~vlVTGas~-g--IG~~ia~~l~~~G~~V~~~~r~ 35 (256)
T 1geg_A 1 MKKVALVTGAGQ-G--IGKAIALRLVKDGFAVAIADYN 35 (256)
T ss_dssp -CCEEEEETTTS-H--HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEECCCC-h--HHHHHHHHHHHCCCEEEEEeCC
Confidence 445666665443 2 2467899999999999988754
No 453
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=21.47 E-value=92 Score=26.35 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCC---CChHH--HHHHHHHHHhC--CCeEEEEeC
Q 042753 5 GAHILVYPFPTS---GHIIP--LLDLTNRLLTL--GLNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p--~l~La~~L~~r--Gh~Vt~~~~ 41 (473)
|+|||++...-. +-.+. ...+++.|.++ ||+|+++--
T Consensus 4 M~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL 47 (211)
T 3p0r_A 4 MTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDL 47 (211)
T ss_dssp CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEG
T ss_pred cCEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 689986664433 22222 23345556555 898887643
No 454
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=21.43 E-value=78 Score=27.54 Aligned_cols=33 Identities=12% Similarity=0.002 Sum_probs=22.0
Q ss_pred HhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEEe
Q 042753 98 FKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVFS 132 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~~ 132 (473)
|... +||+||...... ....--++.|||++.+.
T Consensus 55 i~~l--~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~ 89 (256)
T 2r7a_A 55 ILSL--RPDSVITWQDAGPQIVLDQLRAQKVNVVTLP 89 (256)
T ss_dssp HHTT--CCSEEEEETTCSCHHHHHHHHHTTCEEEEEC
T ss_pred HHcc--CCCEEEEcCCCCCHHHHHHHHHcCCcEEEec
Confidence 4456 899999865422 23344467899998863
No 455
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=21.43 E-value=1.6e+02 Score=26.27 Aligned_cols=39 Identities=3% Similarity=0.015 Sum_probs=30.6
Q ss_pred hHHHHHHHhcCCCCCcEEEeCCCcc--hHHHHHHHhCCCcEEE
Q 042753 91 YPALLDWFKSHPSPPVAILSDFFLG--WTQGLAAELGLPRVVF 131 (473)
Q Consensus 91 ~~~l~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~giP~v~~ 131 (473)
...+.+.+++. +..+|+++.... .+-.+|+..|++.+.+
T Consensus 212 l~~l~~~ik~~--~v~~if~e~~~~~~~~~~ia~~~g~~v~~l 252 (284)
T 2prs_A 212 LHEIRTQLVEQ--KATCVFAEPQFRPAVVESVARGTSVRMGTL 252 (284)
T ss_dssp HHHHHHHHHHT--TCCEEEECTTSCSHHHHHHTTTSCCEEEEC
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCChHHHHHHHHHcCCeEEEe
Confidence 34566677888 999999998766 4568899999998764
No 456
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.40 E-value=73 Score=30.38 Aligned_cols=48 Identities=13% Similarity=0.163 Sum_probs=36.9
Q ss_pred hhhHHHhcCCCCCcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEE
Q 042753 261 HDVLTWLDSRRDESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYC 308 (473)
Q Consensus 261 ~~~~~~l~~~~~~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~ 308 (473)
+...+|-.....+.-|.|-++|+...+....+.+.+++++.+..++..
T Consensus 253 ~~Y~~w~~~~~~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~ 300 (410)
T 4dik_A 253 NHYVSVAKGDPKKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVY 300 (410)
T ss_dssp HHHHHHHHTCCCTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhcccccccceeeEEecccChHHHHHHHHHHHHHhcCCceEEE
Confidence 445567765455667888899998888888899999999999876643
No 457
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=21.29 E-value=1.4e+02 Score=22.52 Aligned_cols=32 Identities=28% Similarity=0.363 Sum_probs=22.2
Q ss_pred CCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~ 135 (473)
.||+||.|.... .+..+.+. -++|+|.++...
T Consensus 62 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~ 102 (149)
T 1k66_A 62 RPAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSS 102 (149)
T ss_dssp CCSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCC
Confidence 899999998765 45555544 357888876554
No 458
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=21.28 E-value=1.6e+02 Score=23.92 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=36.0
Q ss_pred HHHHHHhhHHHHHHHhcCCCCCcEEEeCCCcc-----h----------HHHHHHHhCCCcEEEecchH
Q 042753 84 RVLRELHYPALLDWFKSHPSPPVAILSDFFLG-----W----------TQGLAAELGLPRVVFSPSGA 136 (473)
Q Consensus 84 ~~~~~~~~~~l~~~l~~~~~~pD~VV~D~~~~-----~----------~~~~A~~~giP~v~~~~~~~ 136 (473)
..+. .+.+.+.+++++. +||.+..+..++ . +..++...|+|+.-+.+...
T Consensus 46 ~RL~-~I~~~l~~~i~~~--~Pd~vaiE~~F~~~n~~sal~lgqarGv~~la~~~~glpv~eytP~~v 110 (166)
T 4ep4_A 46 ERVG-RIHARVLEVLHRF--RPEAVAVEEQFFYRQNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQV 110 (166)
T ss_dssp HHHH-HHHHHHHHHHHHH--CCSEEEEECCCCSSCSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHH
T ss_pred HHHH-HHHHHHHHHHHHh--CCCEEEEeehhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHH
Confidence 3444 5568889999999 999998876653 1 13556778999988876654
No 459
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad, rotation; 1.60A {Lactobacillus rhamnosus} SCOP: c.69.1.0 PDB: 3dlt_A 3dyi_A 3dyv_A 3e1g_A
Probab=21.28 E-value=89 Score=26.09 Aligned_cols=37 Identities=16% Similarity=0.063 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.+.+++.++..|+..-+..+++.|.++|+.|..+-.+
T Consensus 22 ~~~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~~ 58 (251)
T 3dkr_A 22 DTGVVLLHAYTGSPNDMNFMARALQRSGYGVYVPLFS 58 (251)
T ss_dssp SEEEEEECCTTCCGGGGHHHHHHHHHTTCEEEECCCT
T ss_pred CceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEecCCC
Confidence 4455566667777778899999999999998765443
No 460
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=21.23 E-value=1.1e+02 Score=35.84 Aligned_cols=47 Identities=17% Similarity=0.217 Sum_probs=40.6
Q ss_pred CCccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCChhhhh
Q 042753 3 PAGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNNLPLLD 49 (473)
Q Consensus 3 ~~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~i~ 49 (473)
|....|+++-.++.|...-...++.+-.++|..|.|++.....+.+.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~ 1125 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1125 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHH
Confidence 34667889999999999999999999999999999999987655554
No 461
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=21.22 E-value=1.3e+02 Score=27.86 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=20.4
Q ss_pred ccCccceeeccCchhH---HHHHhhCCeEec
Q 042753 351 HKAVGAFLTHCGWNSV---LEGVSAGVVMLT 378 (473)
Q Consensus 351 ~~~v~~~ItHgG~~s~---~eal~~GvP~l~ 378 (473)
++++ +|++||.-|. ..|...|+|+++
T Consensus 92 ~PDv--Vi~~g~~~s~p~~laA~~~~iP~vi 120 (365)
T 3s2u_A 92 RPVC--VLGLGGYVTGPGGLAARLNGVPLVI 120 (365)
T ss_dssp CCSE--EEECSSSTHHHHHHHHHHTTCCEEE
T ss_pred CCCE--EEEcCCcchHHHHHHHHHcCCCEEE
Confidence 4676 9999998765 556778999986
No 462
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=21.07 E-value=69 Score=28.59 Aligned_cols=34 Identities=15% Similarity=0.068 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.++||.++-.+..| ..+|+.|+++||+|+++...
T Consensus 3 ~~~kV~VIGaG~mG-----~~iA~~la~~G~~V~l~d~~ 36 (283)
T 4e12_A 3 GITNVTVLGTGVLG-----SQIAFQTAFHGFAVTAYDIN 36 (283)
T ss_dssp SCCEEEEECCSHHH-----HHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCCHHH-----HHHHHHHHhCCCeEEEEeCC
Confidence 36789888444333 57899999999999987543
No 463
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=21.06 E-value=1.1e+02 Score=28.23 Aligned_cols=29 Identities=14% Similarity=0.189 Sum_probs=21.0
Q ss_pred ccCccceeec-cCchhHHHHHhhCCeEecCcc
Q 042753 351 HKAVGAFLTH-CGWNSVLEGVSAGVVMLTWPM 381 (473)
Q Consensus 351 ~~~v~~~ItH-gG~~s~~eal~~GvP~l~~P~ 381 (473)
++++ +|++ .+.....-|-..|+|.+.+-.
T Consensus 114 ~PD~--Vv~~~~~~~~~~aa~~~giP~v~~~~ 143 (391)
T 3tsa_A 114 RPSV--LLVDVCALIGRVLGGLLDLPVVLHRW 143 (391)
T ss_dssp CCSE--EEEETTCHHHHHHHHHTTCCEEEECC
T ss_pred CCCE--EEeCcchhHHHHHHHHhCCCEEEEec
Confidence 5776 6665 566667777889999988743
No 464
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=21.05 E-value=1.4e+02 Score=30.56 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=24.6
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+|||+.-. |.+ ...+++.+.+.|++++.+.+...
T Consensus 29 ~kILI~g~---Gei--a~~iiraar~lGi~~vav~s~~d 62 (675)
T 3u9t_A 29 QRLLVANR---GEI--ACRVMRSARALGIGSVAVHSDID 62 (675)
T ss_dssp SEEEECCC---HHH--HHHHHHHHHHHTCEEEEEECSGG
T ss_pred CEEEEECC---CHH--HHHHHHHHHHCCCEEEEEECCCC
Confidence 66776543 322 67888999999999988876644
No 465
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=21.02 E-value=3.5e+02 Score=22.29 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCCchhhHHhhcCCCeEeecCccHHHhhhccCccceeeccCchh
Q 042753 286 LTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVLPDGFEDRVAGRGYVIRGWSQQVAILRHKAVGAFLTHCGWNS 365 (473)
Q Consensus 286 ~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~lp~~~~~~~~~~nv~v~~~~pq~~lL~~~~v~~~ItHgG~~s 365 (473)
..++.+.++++..++.+.++|.+.-+.. ..||.-+.....-+-+=+ | ...+ .-+|..+
T Consensus 52 R~p~~l~~~~~~a~~~g~~ViIa~AG~a--------a~LpgvvA~~t~~PVIgV----P-------~~~~---~l~G~ds 109 (183)
T 1o4v_A 52 RTPDRMFEYAKNAEERGIEVIIAGAGGA--------AHLPGMVASITHLPVIGV----P-------VKTS---TLNGLDS 109 (183)
T ss_dssp TCHHHHHHHHHHTTTTTCCEEEEEEESS--------CCHHHHHHHHCSSCEEEE----E-------ECCT---TTTTHHH
T ss_pred CCHHHHHHHHHHHHhCCCcEEEEecCcc--------cccHHHHHhccCCCEEEe----e-------CCCC---CCCcHHH
Confidence 5677788888877777888888877654 556643332222221111 1 0111 4478888
Q ss_pred HHHHHhh--CCeEecCcccccchhhHHHHHHHhcceEEeccCCCCCCCHHHHHHHHHHHhC
Q 042753 366 VLEGVSA--GVVMLTWPMDADQYTNAQLLVDQLGVGIRVGEGTRNIPESDELARLLAQSVD 424 (473)
Q Consensus 366 ~~eal~~--GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~~i~~~l~ 424 (473)
++..+.. |+|+-++ ..|-..||..++.+ + + .+....|.+.+++--.
T Consensus 110 LlSivqmP~GvpVatV--~Id~~~nAa~lAaq--I---l------a~~d~~l~~kL~~~r~ 157 (183)
T 1o4v_A 110 LFSIVQMPGGVPVATV--AINNAKNAGILAAS--I---L------GIKYPEIARKVKEYKE 157 (183)
T ss_dssp HHHHHTCCTTCCCEEC--CTTCHHHHHHHHHH--H---H------HTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeeEEE--ecCCchHHHHHHHH--H---H------hcCCHHHHHHHHHHHH
Confidence 8888888 9995554 45688899888744 1 2 2345678777765543
No 466
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=20.92 E-value=85 Score=27.49 Aligned_cols=35 Identities=11% Similarity=-0.036 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|-|.++++..+.| =-.++|+.|+++|++|.++...
T Consensus 1 MnK~vlVTGas~G---IG~aia~~la~~Ga~V~~~~~~ 35 (247)
T 3ged_A 1 MNRGVIVTGGGHG---IGKQICLDFLEAGDKVCFIDID 35 (247)
T ss_dssp -CCEEEEESTTSH---HHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCEEEEecCCCH---HHHHHHHHHHHCCCEEEEEeCC
Confidence 5577888877765 3468899999999999888754
No 467
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=20.89 E-value=1e+02 Score=25.74 Aligned_cols=39 Identities=15% Similarity=0.188 Sum_probs=30.1
Q ss_pred ccEEEEEcCCCC---CChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTS---GHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..+|+++|.-+. --..+...|++.|.++|.+|.|..+|-
T Consensus 46 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 87 (203)
T 2fsv_C 46 ASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPV 87 (203)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467778774321 345678999999999999999999984
No 468
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=20.81 E-value=90 Score=26.79 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=24.0
Q ss_pred CCcEEE-eCCCcc-hHHHHHHHhCCCcEEEecch
Q 042753 104 PPVAIL-SDFFLG-WTQGLAAELGLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV-~D~~~~-~~~~~A~~~giP~v~~~~~~ 135 (473)
.||+|| .|+..- -++.=|.++|||+|.++-..
T Consensus 149 ~Pdllvv~Dp~~e~~ai~Ea~~l~IP~IalvDTn 182 (218)
T 3r8n_B 149 LPDALFVIDADHEHIAIKEANNLGIPVFAIVDTN 182 (218)
T ss_dssp CCCSCEEEETGGGHHHHHHHHHHTCCCEEECCSS
T ss_pred CCCeEEecCcccccHHHHHHHHhCCCEEEEEeCc
Confidence 688765 666543 56778999999999987653
No 469
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=20.80 E-value=90 Score=26.11 Aligned_cols=37 Identities=14% Similarity=0.171 Sum_probs=22.5
Q ss_pred ccEEEEEc-CCCC---CChHHHH-HHHHHHHhCC--CeEEEEeC
Q 042753 5 GAHILVYP-FPTS---GHIIPLL-DLTNRLLTLG--LNVTVLIT 41 (473)
Q Consensus 5 ~~~Il~~~-~~~~---GH~~p~l-~La~~L~~rG--h~Vt~~~~ 41 (473)
|+|||++. .|-. |+..-+. .+++.|.++| ++|.++--
T Consensus 1 M~kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL 44 (208)
T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDV 44 (208)
T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEET
T ss_pred CCeEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeC
Confidence 67887555 4442 5554443 4566777777 99888753
No 470
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=20.72 E-value=2e+02 Score=23.24 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=24.4
Q ss_pred CccEE-EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 4 AGAHI-LVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 4 ~~~~I-l~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
.|+|| +--|+.......-...+.++|.++.+.+.++.+.
T Consensus 3 ~M~kIYLAGP~Fs~~q~~~~~~l~~~L~~~~~g~~v~~P~ 42 (162)
T 3ehd_A 3 AMTKIYFAGPLFSQADLRYNAYLVEQIRQLDKTIDLYLPQ 42 (162)
T ss_dssp -CEEEEEESCCSSHHHHHHHHHHHHHHHTTCTTEEEECGG
T ss_pred CccEEEEECCCCCHHHHHHHHHHHHHHHhcCCCCEEECCC
Confidence 47887 4445555566777777888898763334555554
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=20.70 E-value=1.9e+02 Score=24.99 Aligned_cols=36 Identities=14% Similarity=0.210 Sum_probs=28.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhCCCe-EEEEeCC
Q 042753 7 HILVYPFPTSGHIIPLLDLTNRLLTLGLN-VTVLITQ 42 (473)
Q Consensus 7 ~Il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~~~ 42 (473)
-|+|.-.++.|--.-...|++.|..+|+. |.+.-.|
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep 65 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREP 65 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCC
Confidence 45666688889999999999999999999 5544444
No 472
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=20.68 E-value=1.2e+02 Score=22.79 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=25.1
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHH-------hCCCcEEEecchH
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAE-------LGLPRVVFSPSGA 136 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~-------~giP~v~~~~~~~ 136 (473)
.+.++.. .||+||.|.... .+..+++. -++|+|.++....
T Consensus 47 ~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 95 (143)
T 3cnb_A 47 GDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALT 95 (143)
T ss_dssp HHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCC
T ss_pred HHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCC
Confidence 3445566 899999998754 34444433 2578887765543
No 473
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=20.68 E-value=1.1e+02 Score=23.04 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHhcCCCCCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecc
Q 042753 95 LDWFKSHPSPPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPS 134 (473)
Q Consensus 95 ~~~l~~~~~~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~ 134 (473)
.+.+++. .||+||+|.... .+..+.+.+ .+|+|.++..
T Consensus 44 ~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 44 IDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp HHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEECT
T ss_pred HHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEECC
Confidence 4455667 899999997754 344444332 4666665433
No 474
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2
Probab=20.60 E-value=76 Score=29.39 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=23.5
Q ss_pred Cc-cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 4 AG-AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 4 ~~-~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
+| ++|++. ++.|-+ -..|+++|.++||+|+.+....
T Consensus 22 ~M~~~vlVt--GatG~i--G~~l~~~L~~~g~~V~~~~r~~ 58 (375)
T 1t2a_A 22 HMRNVALIT--GITGQD--GSYLAEFLLEKGYEVHGIVRRS 58 (375)
T ss_dssp --CCEEEEE--TTTSHH--HHHHHHHHHHTTCEEEEEECCC
T ss_pred hcCcEEEEE--CCCchH--HHHHHHHHHHCCCEEEEEECCc
Confidence 35 455544 333433 3678999999999999988653
No 475
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=20.59 E-value=86 Score=23.43 Aligned_cols=35 Identities=11% Similarity=0.065 Sum_probs=22.8
Q ss_pred HhcCCCCCcEEEeCCCcc--hHHHHHHHh-----CCCcEEEecc
Q 042753 98 FKSHPSPPVAILSDFFLG--WTQGLAAEL-----GLPRVVFSPS 134 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~~--~~~~~A~~~-----giP~v~~~~~ 134 (473)
+++. +||+||.|.... .+..+.+.+ ++|+|.++..
T Consensus 42 ~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (134)
T 3f6c_A 42 VETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAK 83 (134)
T ss_dssp HHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC
T ss_pred HHhc--CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCC
Confidence 3445 899999998765 355555443 5787776554
No 476
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.50 E-value=1.4e+02 Score=22.52 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCcEEEeCCCcc--hHHHHHHHh-------CCCcEEEecch
Q 042753 104 PPVAILSDFFLG--WTQGLAAEL-------GLPRVVFSPSG 135 (473)
Q Consensus 104 ~pD~VV~D~~~~--~~~~~A~~~-------giP~v~~~~~~ 135 (473)
.||+||+|.... .+..+++.+ ++|+|.++...
T Consensus 59 ~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 99 (143)
T 2qvg_A 59 HPKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAY 99 (143)
T ss_dssp CCSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCC
T ss_pred CCCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCC
Confidence 899999998755 355555443 57777776553
No 477
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=20.44 E-value=94 Score=27.67 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=27.7
Q ss_pred HhhHHHHHHHhcCCCCCcEEEeCCCcc----------hHHHHHHHhCCCcEEE
Q 042753 89 LHYPALLDWFKSHPSPPVAILSDFFLG----------WTQGLAAELGLPRVVF 131 (473)
Q Consensus 89 ~~~~~l~~~l~~~~~~pD~VV~D~~~~----------~~~~~A~~~giP~v~~ 131 (473)
.+...+.++|++. +||+||+-.... .+..+++..|+|++.+
T Consensus 135 ~l~~~l~~~ir~~--~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 135 EVADDIRSIIDEF--DPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHHH--CCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHHHc--CCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 5667888999999 999999743211 1234456678876654
No 478
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=20.42 E-value=1.1e+02 Score=25.07 Aligned_cols=38 Identities=11% Similarity=-0.037 Sum_probs=27.1
Q ss_pred ccEEEEEcCCCCC----ChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSG----HIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~G----H~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
|++|.++.....+ +..-...|++.|+++|+.|+.=..+
T Consensus 1 m~~V~V~gs~~~~~~~~~~~~A~~lg~~La~~g~~lV~Ggg~ 42 (171)
T 1weh_A 1 MRLLAVFVSSRLSPEDPLYARWVRYGEVLAEEGFGLACGGYQ 42 (171)
T ss_dssp CEEEEEECCSSCCTTSHHHHHHHHHHHHHHHTTEEEEECCSS
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHHHHHHCCCEEEeCChh
Confidence 4567766654443 4567888899999999887776655
No 479
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=20.36 E-value=3.5e+02 Score=22.04 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=65.6
Q ss_pred CcEEEEEeCCcccCCHHHHHHHHHHHHhCCCcEEEEEeCCCccCCcccCCCC-chhhHHhhcCCCeEe---ecCccHHHh
Q 042753 273 ESVVYVCFGSRYVLTAKQIHELAAALEKTDVDFVYCVREPDERHASQDCGVL-PDGFEDRVAGRGYVI---RGWSQQVAI 348 (473)
Q Consensus 273 ~~~V~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~l-p~~~~~~~~~~nv~v---~~~~pq~~l 348 (473)
+.+++.-.|+..... ...+++.|.+.+..+-.+..... . ..+ |+.|+. ... .++. ..|+++.++
T Consensus 6 k~IllgvTGs~aa~k---~~~ll~~L~~~g~~V~vv~T~~A----~---~fi~~~~l~~-l~~-~v~~~~~~~~~~hi~l 73 (175)
T 3qjg_A 6 ENVLICLCGSVNSIN---ISHYIIELKSKFDEVNVIASTNG----R---KFINGEILKQ-FCD-NYYDEFEDPFLNHVDI 73 (175)
T ss_dssp CEEEEEECSSGGGGG---HHHHHHHHTTTCSEEEEEECTGG----G---GGSCHHHHHH-HCS-CEECTTTCTTCCHHHH
T ss_pred CEEEEEEeCHHHHHH---HHHHHHHHHHCCCEEEEEECcCH----H---HHhhHHHHHH-hcC-CEEecCCCCccccccc
Confidence 567777778876542 34567778878888777776653 1 112 223322 212 2332 134666666
Q ss_pred hhccCccceeeccCchhHH-------------HHHhhCCeEecCcc-------cccchhhHHHHHHHhcc
Q 042753 349 LRHKAVGAFLTHCGWNSVL-------------EGVSAGVVMLTWPM-------DADQYTNAQLLVDQLGV 398 (473)
Q Consensus 349 L~~~~v~~~ItHgG~~s~~-------------eal~~GvP~l~~P~-------~~DQ~~na~rv~~~~G~ 398 (473)
-..+++ .+|--+-.||+. -++..++|++++|- +.=...|..++.+. |+
T Consensus 74 ~~~aD~-~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~Pamn~~m~~~p~~~~Nl~~L~~~-G~ 141 (175)
T 3qjg_A 74 ANKHDK-IIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFPNMNLRMWENPVTQNNIRLLKDY-GV 141 (175)
T ss_dssp HHTCSE-EEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEECEEHHHHTCHHHHHHHHHHHHT-TC
T ss_pred cchhCE-EEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEecCChhhhcCHHHHHHHHHHHHC-CC
Confidence 666665 566666666543 24677999999993 22224566677743 65
No 480
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=20.20 E-value=1.1e+02 Score=25.70 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCC---CChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTS---GHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
..+|+++|.-+. --..+...|++.|.++|.+|.|..+|-
T Consensus 45 A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPV 86 (207)
T 1djl_A 45 ANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPV 86 (207)
T ss_dssp CSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCcc
Confidence 457777774322 345678899999999999999999984
No 481
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=20.17 E-value=77 Score=28.27 Aligned_cols=35 Identities=23% Similarity=0.324 Sum_probs=25.0
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
|++|++.- +.|.+ -..++++|.++||+|+.++...
T Consensus 4 ~~~ilVtG--atG~i--G~~l~~~L~~~g~~V~~l~R~~ 38 (308)
T 1qyc_A 4 RSRILLIG--ATGYI--GRHVAKASLDLGHPTFLLVRES 38 (308)
T ss_dssp CCCEEEES--TTSTT--HHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEEc--CCcHH--HHHHHHHHHhCCCCEEEEECCc
Confidence 66776553 34444 2478899999999999887653
No 482
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=20.17 E-value=1.6e+02 Score=22.13 Aligned_cols=31 Identities=32% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCcEEEeCCCcc---hHHHHHHH----hCCCcEEEecc
Q 042753 104 PPVAILSDFFLG---WTQGLAAE----LGLPRVVFSPS 134 (473)
Q Consensus 104 ~pD~VV~D~~~~---~~~~~A~~----~giP~v~~~~~ 134 (473)
.||+||.|...+ .+..+++. -++|+|.++..
T Consensus 50 ~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ls~~ 87 (140)
T 3h5i_A 50 YPDLILMDIELGEGMDGVQTALAIQQISELPVVFLTAH 87 (140)
T ss_dssp CCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEEESS
T ss_pred CCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEEECC
Confidence 899999998753 34444433 37888776544
No 483
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=20.10 E-value=74 Score=26.87 Aligned_cols=33 Identities=18% Similarity=0.244 Sum_probs=24.5
Q ss_pred ccEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 42 (473)
++||.++-.+..| ..+|+.|.++||+|+++...
T Consensus 19 ~~~I~iiG~G~mG-----~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 19 GMEITIFGKGNMG-----QAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp -CEEEEECCSHHH-----HHHHHHHHHTTCEEEEECTT
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEEcCC
Confidence 6788887554444 67899999999999988654
No 484
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=20.10 E-value=86 Score=28.40 Aligned_cols=33 Identities=12% Similarity=0.141 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEeCCCC
Q 042753 6 AHILVYPFPTSGHIIPLLDLTNRLLTLGLNVTVLITQNN 44 (473)
Q Consensus 6 ~~Il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 44 (473)
+||+++..+ ....+++++.++||+|.++.....
T Consensus 3 m~Ililg~g------~~~~l~~a~~~~G~~v~~~~~~~~ 35 (334)
T 2r85_A 3 VRIATYASH------SALQILKGAKDEGFETIAFGSSKV 35 (334)
T ss_dssp SEEEEESST------THHHHHHHHHHTTCCEEEESCGGG
T ss_pred eEEEEECCh------hHHHHHHHHHhCCCEEEEEECCCC
Confidence 588887765 567899999999999998877643
No 485
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=20.09 E-value=79 Score=27.92 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=30.7
Q ss_pred ccEEEEEcC---CCCCChHHHHHHHHHHHhCCCeEEEEeCCC
Q 042753 5 GAHILVYPF---PTSGHIIPLLDLTNRLLTLGLNVTVLITQN 43 (473)
Q Consensus 5 ~~~Il~~~~---~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 43 (473)
++|.+|++. ++.|-=.-..+|+..|..||++||.+=.++
T Consensus 22 ~mKyIfVTGGVvSglGKGi~aaSlG~LLk~rG~~Vt~~KiDP 63 (294)
T 2c5m_A 22 SMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDP 63 (294)
T ss_dssp CCEEEEEEECSSTTSCHHHHHHHHHHHHHTTTCCEECCEEEC
T ss_pred ceEEEEEcCccccccchHHHHHHHHHHHHHCCCeeEEEecCC
Confidence 457777774 455777888999999999999999866543
No 486
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=20.05 E-value=1.6e+02 Score=25.16 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=21.9
Q ss_pred HhcCCCCCcEEEeCCCc-c-hHHHHHHHhCCCcEEEec
Q 042753 98 FKSHPSPPVAILSDFFL-G-WTQGLAAELGLPRVVFSP 133 (473)
Q Consensus 98 l~~~~~~pD~VV~D~~~-~-~~~~~A~~~giP~v~~~~ 133 (473)
|... +||+||..... . ....--++.|||++.+..
T Consensus 53 i~~l--~PDLIi~~~~~~~~~~~~~L~~~gipvv~~~~ 88 (245)
T 1n2z_A 53 IVAL--KPDLVIAWRGGNAERQVDQLASLGIKVMWVDA 88 (245)
T ss_dssp HHHT--CCSEEEECTTTSCHHHHHHHHHHTCCEEECCC
T ss_pred Hhcc--CCCEEEEeCCCCcHHHHHHHHHCCCcEEEeCC
Confidence 3446 89999985321 2 233444678999987654
No 487
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=20.05 E-value=1.1e+02 Score=25.46 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=25.1
Q ss_pred ccEEEEEcCCC--CCChHHHHH-HHHH-HHhCCCeEEEEeCC
Q 042753 5 GAHILVYPFPT--SGHIIPLLD-LTNR-LLTLGLNVTVLITQ 42 (473)
Q Consensus 5 ~~~Il~~~~~~--~GH~~p~l~-La~~-L~~rGh~Vt~~~~~ 42 (473)
|+||+++.... .|+..-+.. +++. |.++|++|.++--.
T Consensus 2 Mmkilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~ 43 (197)
T 2vzf_A 2 TYSIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVI 43 (197)
T ss_dssp CEEEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGG
T ss_pred CceEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 67898766543 365555444 4566 77789998887643
No 488
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=20.01 E-value=2.6e+02 Score=27.69 Aligned_cols=26 Identities=19% Similarity=0.195 Sum_probs=21.7
Q ss_pred cceeeccCc------hhHHHHHhhCCeEecCc
Q 042753 355 GAFLTHCGW------NSVLEGVSAGVVMLTWP 380 (473)
Q Consensus 355 ~~~ItHgG~------~s~~eal~~GvP~l~~P 380 (473)
+++++|.|- +.+.||-+.++|+|++-
T Consensus 75 ~v~~~TsGpG~~N~~~~l~~A~~~~vPll~it 106 (566)
T 1ozh_A 75 GVALVTSGPGCSNLITGMATANSEGDPVVALG 106 (566)
T ss_dssp EEEEECSTHHHHTTHHHHHHHHHHTCCEEEEE
T ss_pred EEEEEccChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 348888885 68899999999999874
Done!