Query 042754
Match_columns 178
No_of_seqs 203 out of 1117
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 09:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042754.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042754hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3349 Predicted glycosyltran 100.0 7.2E-31 1.6E-35 187.8 17.2 165 11-175 3-170 (170)
2 COG0707 MurG UDP-N-acetylgluco 100.0 1.2E-29 2.5E-34 209.5 14.3 159 10-173 182-355 (357)
3 PF04101 Glyco_tran_28_C: Glyc 100.0 1.8E-30 3.9E-35 193.6 2.8 139 13-154 1-146 (167)
4 PRK12446 undecaprenyldiphospho 99.9 3.2E-26 7E-31 189.4 15.1 155 9-171 183-351 (352)
5 COG1819 Glycosyl transferases, 99.9 2.3E-21 5E-26 163.2 13.7 152 7-174 233-400 (406)
6 cd03784 GT1_Gtf_like This fami 99.9 1.3E-21 2.8E-26 163.7 11.3 126 9-150 237-370 (401)
7 PF13528 Glyco_trans_1_3: Glyc 99.8 1.6E-19 3.4E-24 146.6 16.2 121 9-149 190-317 (318)
8 COG5017 Uncharacterized conser 99.8 1.9E-19 4E-24 127.2 13.3 139 13-159 1-145 (161)
9 TIGR01426 MGT glycosyltransfer 99.8 1.5E-19 3.3E-24 151.1 13.7 151 9-173 223-390 (392)
10 COG4671 Predicted glycosyl tra 99.8 1.2E-18 2.7E-23 140.6 15.0 161 9-173 217-389 (400)
11 PHA03392 egt ecdysteroid UDP-g 99.8 1.2E-18 2.5E-23 150.4 14.9 123 11-150 296-430 (507)
12 TIGR00661 MJ1255 conserved hyp 99.8 4.6E-18 1E-22 138.9 15.9 121 10-149 187-308 (321)
13 PLN02605 monogalactosyldiacylg 99.8 7.2E-18 1.6E-22 140.8 12.2 159 9-173 204-379 (382)
14 PRK13608 diacylglycerol glucos 99.8 8.6E-18 1.9E-22 140.9 12.6 154 9-173 200-369 (391)
15 PF00201 UDPGT: UDP-glucoronos 99.7 1.6E-17 3.4E-22 143.0 12.8 124 9-150 274-407 (500)
16 PRK00726 murG undecaprenyldiph 99.7 9.2E-17 2E-21 132.4 15.2 160 9-173 181-355 (357)
17 cd03785 GT1_MurG MurG is an N- 99.7 2.2E-16 4.8E-21 129.3 13.9 157 8-167 178-349 (350)
18 TIGR03590 PseG pseudaminic aci 99.7 1.2E-16 2.6E-21 128.5 9.5 107 11-128 170-279 (279)
19 TIGR03492 conserved hypothetic 99.7 1.3E-15 2.7E-20 128.1 14.0 156 9-173 203-396 (396)
20 PLN02210 UDP-glucosyl transfer 99.7 1E-15 2.2E-20 130.8 12.8 130 9-150 267-413 (456)
21 PRK13609 diacylglycerol glucos 99.7 8.4E-16 1.8E-20 127.9 12.0 155 9-174 200-370 (380)
22 PLN02448 UDP-glycosyltransfera 99.7 1.4E-15 3E-20 130.1 12.6 128 9-151 272-414 (459)
23 PLN02207 UDP-glycosyltransfera 99.6 2.3E-15 5.1E-20 128.6 12.6 130 9-150 273-424 (468)
24 PLN02562 UDP-glycosyltransfera 99.6 3.4E-15 7.3E-20 127.3 12.7 128 11-150 273-411 (448)
25 PLN02554 UDP-glycosyltransfera 99.6 2.2E-15 4.7E-20 129.5 9.7 130 9-150 272-438 (481)
26 PLN03007 UDP-glucosyltransfera 99.6 3.9E-15 8.5E-20 128.0 11.2 130 9-150 283-438 (482)
27 PLN02410 UDP-glucoronosyl/UDP- 99.6 4.7E-15 1E-19 126.4 11.4 130 8-150 261-408 (451)
28 PLN02863 UDP-glucoronosyl/UDP- 99.6 6.3E-15 1.4E-19 126.4 11.9 131 9-150 281-431 (477)
29 PLN02670 transferase, transfer 99.6 1.4E-14 3.1E-19 123.9 13.6 131 9-150 276-427 (472)
30 PLN03004 UDP-glycosyltransfera 99.6 1.3E-14 2.8E-19 123.6 12.2 132 9-151 268-423 (451)
31 PLN02173 UDP-glucosyl transfer 99.6 1.6E-14 3.6E-19 122.9 11.6 129 9-150 262-406 (449)
32 PLN02167 UDP-glycosyltransfera 99.6 1.3E-14 2.9E-19 124.5 11.0 131 9-150 278-432 (475)
33 TIGR01133 murG undecaprenyldip 99.6 3.7E-14 8E-19 116.1 12.9 155 9-168 177-347 (348)
34 PLN02555 limonoid glucosyltran 99.6 5.3E-14 1.1E-18 120.7 13.3 129 10-150 276-427 (480)
35 PLN02764 glycosyltransferase f 99.6 6.8E-14 1.5E-18 119.1 13.2 132 7-150 253-405 (453)
36 PLN00164 glucosyltransferase; 99.6 3.3E-14 7.1E-19 122.2 11.4 130 10-150 271-429 (480)
37 PLN02152 indole-3-acetate beta 99.5 5.1E-14 1.1E-18 120.1 11.9 130 9-150 259-415 (455)
38 PLN02992 coniferyl-alcohol glu 99.5 4.2E-14 9.1E-19 121.2 11.4 131 9-150 261-425 (481)
39 PLN02208 glycosyltransferase f 99.5 6.5E-14 1.4E-18 119.2 12.3 132 8-150 248-399 (442)
40 PLN00414 glycosyltransferase f 99.5 1.1E-13 2.4E-18 117.9 13.2 132 7-150 248-400 (446)
41 TIGR00215 lpxB lipid-A-disacch 99.5 7.8E-14 1.7E-18 116.9 6.9 142 8-153 188-348 (385)
42 COG3980 spsG Spore coat polysa 99.4 9.9E-13 2.2E-17 103.9 9.9 129 10-149 157-290 (318)
43 PLN03015 UDP-glucosyl transfer 99.4 2.9E-12 6.4E-17 109.6 12.8 131 8-150 264-424 (470)
44 PLN02534 UDP-glycosyltransfera 99.4 2.8E-12 6E-17 110.4 12.5 130 9-150 281-442 (491)
45 PRK00025 lpxB lipid-A-disaccha 99.4 6.5E-13 1.4E-17 110.3 7.8 157 10-173 185-375 (380)
46 KOG1192 UDP-glucuronosyl and U 99.3 1.3E-11 2.7E-16 106.1 11.8 115 11-136 277-401 (496)
47 PRK14089 ipid-A-disaccharide s 99.0 5.1E-10 1.1E-14 92.6 7.5 108 11-130 167-276 (347)
48 cd03786 GT1_UDP-GlcNAc_2-Epime 99.0 5.6E-09 1.2E-13 86.0 11.5 93 68-169 258-362 (363)
49 TIGR00236 wecB UDP-N-acetylglu 98.6 1.5E-06 3.2E-11 72.1 13.9 146 10-171 196-363 (365)
50 cd03814 GT1_like_2 This family 98.5 1.1E-06 2.4E-11 71.0 10.5 120 12-150 197-330 (364)
51 cd03808 GT1_cap1E_like This fa 98.5 3.1E-06 6.7E-11 67.7 12.4 125 10-150 186-327 (359)
52 cd03823 GT1_ExpE7_like This fa 98.4 5.2E-06 1.1E-10 66.8 12.1 126 9-150 188-327 (359)
53 PF00534 Glycos_transf_1: Glyc 98.3 1.7E-05 3.8E-10 58.3 12.5 129 9-150 12-156 (172)
54 cd03801 GT1_YqgM_like This fam 98.3 9E-06 2E-10 64.8 11.3 125 10-150 197-339 (374)
55 cd04951 GT1_WbdM_like This fam 98.3 6.6E-06 1.4E-10 66.8 9.6 124 11-150 187-324 (360)
56 cd03807 GT1_WbnK_like This fam 98.3 1E-05 2.2E-10 64.9 10.5 124 11-150 192-330 (365)
57 cd03798 GT1_wlbH_like This fam 98.3 1.9E-05 4.1E-10 63.3 11.7 127 11-151 201-343 (377)
58 cd05844 GT1_like_7 Glycosyltra 98.3 5.7E-06 1.2E-10 67.7 8.7 126 11-150 187-334 (367)
59 cd03820 GT1_amsD_like This fam 98.2 1.8E-05 4E-10 62.9 11.3 125 10-150 176-317 (348)
60 cd03812 GT1_CapH_like This fam 98.2 2.8E-05 6E-10 63.3 12.3 124 10-150 190-329 (358)
61 cd03819 GT1_WavL_like This fam 98.2 2.7E-05 5.8E-10 63.3 12.0 126 10-149 183-327 (355)
62 PRK05749 3-deoxy-D-manno-octul 98.2 3.1E-05 6.6E-10 65.5 12.1 78 69-150 303-386 (425)
63 cd03794 GT1_wbuB_like This fam 98.2 2.2E-05 4.8E-10 63.4 10.5 126 9-150 217-363 (394)
64 cd03821 GT1_Bme6_like This fam 98.2 3.6E-05 7.8E-10 61.9 11.3 124 10-150 201-343 (375)
65 cd03817 GT1_UGDG_like This fam 98.1 2.6E-05 5.6E-10 62.9 9.8 125 10-150 200-341 (374)
66 cd04962 GT1_like_5 This family 98.1 3.4E-05 7.4E-10 63.2 10.7 124 11-150 196-334 (371)
67 PF04007 DUF354: Protein of un 98.1 0.00012 2.5E-09 60.6 13.5 147 10-173 178-334 (335)
68 cd03811 GT1_WabH_like This fam 98.1 6.4E-05 1.4E-09 59.7 11.6 123 10-148 187-325 (353)
69 cd03800 GT1_Sucrose_synthase T 98.1 7.9E-05 1.7E-09 61.5 12.3 76 67-150 282-366 (398)
70 PLN02871 UDP-sulfoquinovose:DA 98.1 5E-05 1.1E-09 65.2 11.4 123 12-150 263-398 (465)
71 cd03799 GT1_amsK_like This is 98.1 6E-05 1.3E-09 61.1 11.1 127 10-150 177-325 (355)
72 cd03822 GT1_ecORF704_like This 98.1 4E-05 8.7E-10 62.0 10.1 75 67-150 246-332 (366)
73 PF02350 Epimerase_2: UDP-N-ac 98.1 4.3E-05 9.3E-10 63.5 10.2 149 9-170 178-346 (346)
74 TIGR03087 stp1 sugar transfera 98.0 3.4E-05 7.3E-10 64.7 9.4 125 13-150 225-360 (397)
75 TIGR03088 stp2 sugar transfera 98.0 0.00011 2.3E-09 60.7 11.2 129 10-150 192-336 (374)
76 cd03825 GT1_wcfI_like This fam 97.9 0.00015 3.2E-09 59.0 11.3 93 46-150 226-328 (365)
77 cd03795 GT1_like_4 This family 97.9 0.0001 2.2E-09 59.7 9.7 122 11-150 190-330 (357)
78 PF13692 Glyco_trans_1_4: Glyc 97.9 6.5E-05 1.4E-09 53.1 7.3 75 67-150 52-133 (135)
79 PRK15484 lipopolysaccharide 1, 97.9 0.00028 6E-09 59.1 12.1 76 67-150 256-342 (380)
80 PRK15427 colanic acid biosynth 97.9 0.00037 8E-09 58.9 12.7 125 10-150 220-368 (406)
81 PF02684 LpxB: Lipid-A-disacch 97.8 0.00025 5.3E-09 59.5 10.2 136 8-150 181-338 (373)
82 PLN02275 transferase, transfer 97.8 0.00048 1E-08 57.4 11.4 74 68-149 286-370 (371)
83 cd03804 GT1_wbaZ_like This fam 97.7 0.00013 2.9E-09 59.7 7.9 119 13-152 196-326 (351)
84 cd04949 GT1_gtfA_like This fam 97.7 0.0003 6.5E-09 58.0 9.8 126 10-150 202-343 (372)
85 TIGR03449 mycothiol_MshA UDP-N 97.7 0.00054 1.2E-08 57.2 11.3 76 67-150 282-366 (405)
86 cd03809 GT1_mtfB_like This fam 97.6 0.00011 2.4E-09 59.4 5.8 124 11-150 194-334 (365)
87 cd03796 GT1_PIG-A_like This fa 97.6 0.00085 1.8E-08 56.2 10.9 127 10-150 191-331 (398)
88 cd03816 GT1_ALG1_like This fam 97.6 0.00082 1.8E-08 56.9 10.6 127 10-152 230-381 (415)
89 cd03792 GT1_Trehalose_phosphor 97.4 0.0024 5.3E-08 52.8 11.3 76 67-150 251-335 (372)
90 PRK10307 putative glycosyl tra 97.4 0.0014 3E-08 55.1 9.9 126 11-150 228-371 (412)
91 PRK09922 UDP-D-galactose:(gluc 97.4 0.0022 4.8E-08 53.0 10.9 79 66-151 234-323 (359)
92 cd04946 GT1_AmsK_like This fam 97.4 0.003 6.4E-08 53.4 11.2 126 10-150 228-375 (407)
93 cd01635 Glycosyltransferase_GT 97.4 0.00096 2.1E-08 50.1 7.4 49 66-114 159-214 (229)
94 TIGR02918 accessory Sec system 97.3 0.0047 1E-07 53.9 12.4 125 10-150 317-465 (500)
95 TIGR03568 NeuC_NnaA UDP-N-acet 97.3 0.0045 9.7E-08 51.7 11.8 90 68-169 262-365 (365)
96 cd03813 GT1_like_3 This family 97.3 0.0023 5E-08 55.1 10.4 124 10-150 291-440 (475)
97 cd03805 GT1_ALG2_like This fam 97.3 0.0034 7.4E-08 51.9 11.1 76 67-150 279-362 (392)
98 PF06258 Mito_fiss_Elm1: Mitoc 97.3 0.022 4.7E-07 46.7 15.4 150 9-173 144-309 (311)
99 TIGR02149 glgA_Coryne glycogen 97.3 0.0056 1.2E-07 50.6 12.2 74 69-150 261-350 (388)
100 cd03818 GT1_ExpC_like This fam 97.3 0.0031 6.7E-08 52.8 10.7 75 68-150 281-364 (396)
101 cd03802 GT1_AviGT4_like This f 97.3 0.0029 6.3E-08 50.9 10.1 76 67-150 223-306 (335)
102 COG0763 LpxB Lipid A disacchar 97.3 0.0018 3.9E-08 54.0 8.4 135 7-150 184-342 (381)
103 PRK15179 Vi polysaccharide bio 97.2 0.0066 1.4E-07 54.9 12.4 123 12-149 517-656 (694)
104 PHA01633 putative glycosyl tra 97.2 0.0041 8.9E-08 51.5 10.1 84 67-150 200-305 (335)
105 TIGR02472 sucr_P_syn_N sucrose 97.1 0.0043 9.4E-08 52.9 9.8 75 68-150 317-404 (439)
106 cd04950 GT1_like_1 Glycosyltra 97.1 0.0037 8E-08 52.1 9.1 73 67-149 253-337 (373)
107 COG0381 WecB UDP-N-acetylgluco 97.1 0.02 4.3E-07 48.0 12.6 153 8-175 201-374 (383)
108 PRK15490 Vi polysaccharide bio 97.0 0.0089 1.9E-07 52.6 11.0 72 67-146 454-532 (578)
109 cd04955 GT1_like_6 This family 96.9 0.0063 1.4E-07 49.4 8.3 75 67-150 247-328 (363)
110 PLN02846 digalactosyldiacylgly 96.8 0.027 5.8E-07 48.7 11.6 122 13-151 229-362 (462)
111 TIGR02095 glgA glycogen/starch 96.6 0.012 2.5E-07 50.7 8.3 123 12-150 291-435 (473)
112 PRK00654 glgA glycogen synthas 96.6 0.023 4.9E-07 48.9 9.9 128 12-149 282-425 (466)
113 PHA01630 putative group 1 glyc 96.5 0.038 8.3E-07 45.6 10.7 37 77-113 201-241 (331)
114 cd03791 GT1_Glycogen_synthase_ 96.4 0.012 2.7E-07 50.3 7.2 130 11-150 295-440 (476)
115 COG3660 Predicted nucleoside-d 96.2 0.39 8.4E-06 38.6 13.7 128 37-175 191-328 (329)
116 PRK14098 glycogen synthase; Pr 96.1 0.034 7.5E-07 48.3 8.4 126 12-149 307-448 (489)
117 PRK01021 lpxB lipid-A-disaccha 95.9 0.06 1.3E-06 47.8 9.1 114 8-130 410-529 (608)
118 PF04464 Glyphos_transf: CDP-G 95.9 0.0091 2E-07 49.6 3.8 100 67-171 251-369 (369)
119 COG1519 KdtA 3-deoxy-D-manno-o 95.9 0.2 4.4E-06 42.5 11.6 78 68-150 300-384 (419)
120 PLN02501 digalactosyldiacylgly 95.7 0.2 4.3E-06 45.6 11.4 120 15-151 549-680 (794)
121 cd03806 GT1_ALG11_like This fa 95.6 0.077 1.7E-06 45.1 8.4 78 67-151 304-391 (419)
122 TIGR02468 sucrsPsyn_pln sucros 95.5 0.21 4.6E-06 47.1 11.5 76 67-150 547-635 (1050)
123 PRK09814 beta-1,6-galactofuran 95.4 0.074 1.6E-06 43.7 7.6 113 12-150 169-298 (333)
124 PF06722 DUF1205: Protein of u 95.4 0.038 8.3E-07 37.5 4.8 57 8-71 37-97 (97)
125 PRK10125 putative glycosyl tra 95.2 0.27 5.9E-06 41.6 10.3 46 69-114 287-339 (405)
126 PRK10017 colanic acid biosynth 94.9 1.2 2.6E-05 38.2 13.5 130 10-150 233-390 (426)
127 PLN02949 transferase, transfer 94.8 0.22 4.8E-06 43.1 8.8 81 67-150 334-420 (463)
128 cd03789 GT1_LPS_heptosyltransf 94.7 0.14 3.1E-06 40.7 7.1 100 11-114 121-226 (279)
129 PF05159 Capsule_synth: Capsul 94.6 0.082 1.8E-06 42.1 5.5 45 69-114 183-227 (269)
130 PF13844 Glyco_transf_41: Glyc 94.1 0.46 1E-05 41.2 9.1 65 67-134 341-410 (468)
131 COG4370 Uncharacterized protei 94.0 0.19 4.1E-06 41.2 6.2 101 68-173 294-411 (412)
132 PRK14099 glycogen synthase; Pr 93.9 0.35 7.6E-06 42.0 8.3 126 13-148 296-440 (485)
133 TIGR02470 sucr_synth sucrose s 93.9 1.4 3.1E-05 40.6 12.4 75 67-149 618-706 (784)
134 COG2099 CobK Precorrin-6x redu 93.7 0.39 8.5E-06 38.1 7.4 47 68-114 174-231 (257)
135 PRK12446 undecaprenyldiphospho 93.6 1.9 4.1E-05 35.9 11.8 28 85-112 91-121 (352)
136 COG1817 Uncharacterized protei 93.2 0.66 1.4E-05 38.1 8.1 63 81-149 248-311 (346)
137 PLN00142 sucrose synthase 93.2 1.8 4E-05 40.1 11.8 73 68-148 642-728 (815)
138 PRK10964 ADP-heptose:LPS hepto 93.1 0.36 7.9E-06 39.3 6.7 77 36-114 203-281 (322)
139 PLN02939 transferase, transfer 92.9 0.89 1.9E-05 42.7 9.5 127 13-149 780-928 (977)
140 TIGR00421 ubiX_pad polyprenyl 92.4 1.3 2.8E-05 33.5 8.4 52 85-136 75-143 (181)
141 TIGR02193 heptsyl_trn_I lipopo 92.3 0.9 2E-05 36.8 8.0 100 10-114 178-282 (319)
142 PF04127 DFP: DNA / pantothena 92.2 1.5 3.2E-05 33.2 8.5 70 11-94 3-91 (185)
143 PLN02316 synthase/transferase 92.1 1.8 3.9E-05 41.2 10.4 128 13-150 841-996 (1036)
144 PF01075 Glyco_transf_9: Glyco 91.9 0.18 3.8E-06 39.3 3.3 100 9-112 103-209 (247)
145 COG3914 Spy Predicted O-linked 91.6 5.4 0.00012 35.5 12.1 113 9-134 427-557 (620)
146 TIGR03713 acc_sec_asp1 accesso 91.6 0.37 8E-06 42.3 5.2 71 68-150 409-486 (519)
147 TIGR00661 MJ1255 conserved hyp 91.1 2.3 4.9E-05 34.6 9.2 29 85-113 93-121 (321)
148 TIGR02195 heptsyl_trn_II lipop 90.8 1.9 4.2E-05 35.2 8.5 101 10-114 173-279 (334)
149 TIGR01133 murG undecaprenyldip 90.4 5.4 0.00012 32.3 10.8 32 79-110 82-118 (348)
150 TIGR00730 conserved hypothetic 90.4 6.2 0.00013 29.7 11.5 68 79-147 90-176 (178)
151 cd03785 GT1_MurG MurG is an N- 90.3 6 0.00013 32.0 11.0 93 13-112 1-119 (350)
152 COG0859 RfaF ADP-heptose:LPS h 90.2 0.52 1.1E-05 38.9 4.6 99 11-114 175-279 (334)
153 PRK10422 lipopolysaccharide co 90.0 3 6.6E-05 34.4 9.0 98 11-112 183-288 (352)
154 COG0438 RfaG Glycosyltransfera 89.9 3.6 7.9E-05 31.8 9.1 74 68-150 257-340 (381)
155 PRK05920 aromatic acid decarbo 89.1 5.7 0.00012 30.6 9.3 52 85-136 93-161 (204)
156 TIGR02919 accessory Sec system 88.8 4.6 0.0001 34.8 9.5 75 68-150 328-409 (438)
157 TIGR02201 heptsyl_trn_III lipo 87.6 5.8 0.00013 32.5 9.2 36 76-112 251-286 (344)
158 PRK10916 ADP-heptose:LPS hepto 86.6 3.3 7.2E-05 34.1 7.2 37 76-113 252-288 (348)
159 TIGR03609 S_layer_CsaB polysac 85.9 16 0.00035 29.2 12.4 49 78-134 243-291 (298)
160 PF13460 NAD_binding_10: NADH( 85.7 12 0.00025 27.3 9.6 85 14-113 1-97 (183)
161 PF02571 CbiJ: Precorrin-6x re 85.6 11 0.00024 29.9 9.4 48 68-115 172-229 (249)
162 PRK09620 hypothetical protein; 85.3 8.4 0.00018 30.2 8.5 74 11-95 3-97 (229)
163 PF10093 DUF2331: Uncharacteri 85.3 6.8 0.00015 33.1 8.3 65 67-132 243-309 (374)
164 TIGR00732 dprA DNA protecting 85.2 16 0.00034 28.4 10.2 48 95-144 171-218 (220)
165 TIGR02400 trehalose_OtsA alpha 85.1 1.8 4E-05 37.4 5.1 65 77-150 347-420 (456)
166 PRK03372 ppnK inorganic polyph 84.4 2.1 4.5E-05 35.2 4.8 33 81-113 68-104 (306)
167 PRK02797 4-alpha-L-fucosyltran 84.0 7 0.00015 32.2 7.6 112 13-136 146-273 (322)
168 cd08549 G1PDH_related Glycerol 84.0 4.8 0.0001 33.2 6.9 30 85-115 80-114 (332)
169 COG4394 Uncharacterized protei 83.9 3.9 8.5E-05 33.4 6.0 47 67-114 237-285 (370)
170 PF05014 Nuc_deoxyrib_tr: Nucl 83.6 1.9 4.1E-05 29.6 3.8 36 78-114 55-98 (113)
171 COG3967 DltE Short-chain dehyd 83.0 2.1 4.5E-05 33.4 4.0 79 11-100 5-93 (245)
172 PRK07313 phosphopantothenoylcy 83.0 15 0.00033 27.6 8.8 56 81-136 73-147 (182)
173 PF11071 DUF2872: Protein of u 82.7 4 8.6E-05 29.2 5.0 63 80-147 67-137 (141)
174 PRK00726 murG undecaprenyldiph 82.4 25 0.00055 28.6 10.9 34 80-113 84-122 (357)
175 PRK07424 bifunctional sterol d 82.4 5.8 0.00013 33.8 6.9 75 10-96 177-256 (406)
176 PF13685 Fe-ADH_2: Iron-contai 82.1 2.9 6.2E-05 33.3 4.7 34 85-119 75-113 (250)
177 PRK04885 ppnK inorganic polyph 81.4 3 6.5E-05 33.5 4.6 30 84-113 34-69 (265)
178 cd08191 HHD 6-hydroxyhexanoate 80.7 5.6 0.00012 33.5 6.3 30 84-114 78-130 (386)
179 cd07766 DHQ_Fe-ADH Dehydroquin 80.6 7.2 0.00016 31.9 6.8 30 84-114 77-113 (332)
180 PRK05579 bifunctional phosphop 80.4 19 0.00042 30.6 9.4 55 81-135 78-149 (399)
181 PRK01911 ppnK inorganic polyph 80.1 4.5 9.7E-05 32.9 5.3 33 81-113 60-96 (292)
182 PRK10586 putative oxidoreducta 79.5 11 0.00024 31.5 7.6 30 84-114 85-119 (362)
183 PRK02649 ppnK inorganic polyph 79.4 3.7 8.1E-05 33.6 4.6 33 81-113 64-100 (305)
184 TIGR00725 conserved hypothetic 79.3 22 0.00048 26.1 9.6 35 80-114 86-124 (159)
185 PF09818 ABC_ATPase: Predicted 79.3 1.7 3.8E-05 37.3 2.7 98 13-114 246-349 (448)
186 PRK02155 ppnK NAD(+)/NADH kina 79.3 4.5 9.7E-05 32.9 5.0 33 81-113 59-95 (291)
187 PLN02695 GDP-D-mannose-3',5'-e 79.0 25 0.00053 29.3 9.6 76 6-94 16-94 (370)
188 PRK13982 bifunctional SbtC-lik 79.0 37 0.0008 29.7 10.7 56 80-135 141-213 (475)
189 PRK14077 pnk inorganic polypho 79.0 4 8.7E-05 33.1 4.7 33 81-113 60-96 (287)
190 PF06506 PrpR_N: Propionate ca 78.9 2.3 4.9E-05 31.7 3.0 30 84-114 33-62 (176)
191 PLN00198 anthocyanidin reducta 78.6 21 0.00044 29.0 8.9 76 8-94 6-89 (338)
192 TIGR02699 archaeo_AfpA archaeo 78.6 4.8 0.0001 30.2 4.7 62 84-145 77-173 (174)
193 PRK10017 colanic acid biosynth 78.5 31 0.00067 29.6 10.1 37 78-114 110-157 (426)
194 PRK03708 ppnK inorganic polyph 78.5 4.2 9.1E-05 32.8 4.6 30 85-114 57-89 (277)
195 PLN02650 dihydroflavonol-4-red 78.4 12 0.00027 30.5 7.6 76 9-94 3-86 (351)
196 PRK04539 ppnK inorganic polyph 78.2 5.9 0.00013 32.3 5.4 56 80-150 63-122 (296)
197 PRK06732 phosphopantothenate-- 78.0 20 0.00044 27.9 8.2 71 13-97 17-93 (229)
198 TIGR00521 coaBC_dfp phosphopan 77.9 18 0.00038 30.8 8.4 73 10-96 184-276 (390)
199 TIGR00715 precor6x_red precorr 77.8 22 0.00048 28.3 8.5 48 68-115 175-233 (256)
200 cd08171 GlyDH-like2 Glycerol d 77.5 20 0.00043 29.7 8.5 30 84-114 77-111 (345)
201 PRK12481 2-deoxy-D-gluconate 3 77.4 8.2 0.00018 30.0 6.0 77 10-96 7-94 (251)
202 PLN02427 UDP-apiose/xylose syn 77.3 22 0.00048 29.6 8.8 18 78-95 79-96 (386)
203 PF07429 Glyco_transf_56: 4-al 77.0 7.7 0.00017 32.5 5.7 126 12-149 184-330 (360)
204 PF01370 Epimerase: NAD depend 76.7 13 0.00029 28.0 6.9 70 14-95 1-75 (236)
205 PRK01185 ppnK inorganic polyph 76.4 6.1 0.00013 31.8 5.0 51 85-150 52-103 (271)
206 PRK05579 bifunctional phosphop 76.4 21 0.00045 30.5 8.4 71 10-96 187-278 (399)
207 cd08176 LPO Lactadehyde:propan 76.3 12 0.00026 31.3 7.0 30 84-114 84-136 (377)
208 PRK09134 short chain dehydroge 76.0 13 0.00029 28.7 6.8 77 9-95 7-97 (258)
209 PF04230 PS_pyruv_trans: Polys 74.5 7.4 0.00016 29.8 5.0 37 77-114 249-285 (286)
210 cd03788 GT1_TPS Trehalose-6-Ph 74.5 3.6 7.7E-05 35.5 3.4 66 77-150 352-425 (460)
211 PLN02896 cinnamyl-alcohol dehy 74.5 17 0.00036 29.8 7.3 79 6-95 5-89 (353)
212 COG0111 SerA Phosphoglycerate 74.3 15 0.00032 30.4 6.9 52 77-148 189-249 (324)
213 PRK14075 pnk inorganic polypho 74.2 8.2 0.00018 30.7 5.2 30 84-113 40-70 (256)
214 cd08187 BDH Butanol dehydrogen 74.2 20 0.00044 30.1 7.8 30 84-114 85-137 (382)
215 TIGR03837 efp_adjacent_2 conse 74.1 5.7 0.00012 33.4 4.3 64 68-132 242-307 (371)
216 PRK15181 Vi polysaccharide bio 73.7 21 0.00045 29.3 7.7 18 78-95 83-100 (348)
217 TIGR02638 lactal_redase lactal 73.7 15 0.00033 30.8 6.9 31 84-115 85-140 (379)
218 cd03793 GT1_Glycogen_synthase_ 73.5 4 8.7E-05 36.4 3.5 36 79-114 468-507 (590)
219 cd08181 PPD-like 1,3-propanedi 73.5 19 0.00041 30.0 7.4 30 84-114 82-133 (357)
220 TIGR03646 YtoQ_fam YtoQ family 73.5 15 0.00032 26.4 5.7 35 80-114 70-112 (144)
221 PRK06179 short chain dehydroge 73.3 27 0.00059 27.1 8.0 71 11-96 4-84 (270)
222 PRK03378 ppnK inorganic polyph 72.9 7.9 0.00017 31.5 4.9 55 80-149 58-116 (292)
223 PLN02331 phosphoribosylglycina 72.6 13 0.00029 28.6 5.8 79 13-100 3-92 (207)
224 cd08193 HVD 5-hydroxyvalerate 72.5 18 0.00039 30.3 7.1 30 84-114 82-134 (376)
225 PLN02929 NADH kinase 72.2 6.3 0.00014 32.3 4.1 68 81-150 60-135 (301)
226 cd08551 Fe-ADH iron-containing 71.9 32 0.00068 28.7 8.4 31 84-115 79-132 (370)
227 PRK13982 bifunctional SbtC-lik 71.7 47 0.001 29.1 9.5 71 9-93 254-342 (475)
228 PRK12367 short chain dehydroge 71.5 26 0.00057 27.3 7.5 75 10-96 13-90 (245)
229 PRK10624 L-1,2-propanediol oxi 71.5 20 0.00044 30.1 7.2 30 85-115 87-141 (382)
230 PRK07856 short chain dehydroge 71.4 27 0.0006 26.8 7.6 70 11-95 6-85 (252)
231 cd08194 Fe-ADH6 Iron-containin 71.2 23 0.0005 29.7 7.5 30 84-114 79-131 (375)
232 PRK09288 purT phosphoribosylgl 71.1 56 0.0012 27.2 9.8 127 5-149 6-148 (395)
233 TIGR03609 S_layer_CsaB polysac 70.6 13 0.00027 29.9 5.6 78 22-114 13-108 (298)
234 PRK08265 short chain dehydroge 70.6 17 0.00037 28.3 6.3 73 11-95 6-90 (261)
235 PF00465 Fe-ADH: Iron-containi 69.6 22 0.00049 29.5 7.0 36 79-115 70-131 (366)
236 cd08185 Fe-ADH1 Iron-containin 69.5 30 0.00064 29.0 7.8 16 85-101 83-98 (380)
237 PLN02253 xanthoxin dehydrogena 69.3 19 0.00041 28.3 6.3 30 11-50 18-48 (280)
238 COG1052 LdhA Lactate dehydroge 68.9 24 0.00052 29.2 6.9 23 73-96 189-211 (324)
239 PRK06935 2-deoxy-D-gluconate 3 68.8 18 0.00039 28.0 6.0 32 10-51 14-46 (258)
240 PF01488 Shikimate_DH: Shikima 68.4 12 0.00026 26.5 4.5 57 38-96 30-86 (135)
241 cd08170 GlyDH Glycerol dehydro 68.4 22 0.00048 29.4 6.8 30 84-114 76-110 (351)
242 PRK08057 cobalt-precorrin-6x r 68.2 59 0.0013 25.8 9.4 42 74-115 176-225 (248)
243 TIGR00215 lpxB lipid-A-disacch 68.2 39 0.00085 28.3 8.3 27 85-111 89-119 (385)
244 PLN02214 cinnamoyl-CoA reducta 68.1 44 0.00095 27.4 8.4 18 78-95 74-91 (342)
245 PRK15454 ethanol dehydrogenase 68.0 33 0.00071 29.1 7.8 30 84-114 105-157 (395)
246 cd08182 HEPD Hydroxyethylphosp 67.9 17 0.00037 30.3 6.0 16 85-101 77-92 (367)
247 PLN02989 cinnamyl-alcohol dehy 67.7 46 0.001 26.7 8.4 18 78-95 70-87 (325)
248 KOG1198 Zinc-binding oxidoredu 67.6 19 0.0004 30.1 6.1 88 2-103 149-243 (347)
249 KOG4180 Predicted kinase [Gene 67.6 1.9 4.2E-05 35.6 0.3 35 78-112 98-136 (395)
250 PRK05693 short chain dehydroge 67.2 21 0.00045 27.9 6.1 71 12-95 2-82 (274)
251 COG0299 PurN Folate-dependent 67.1 44 0.00095 25.7 7.4 113 13-135 4-136 (200)
252 PRK06171 sorbitol-6-phosphate 66.9 50 0.0011 25.6 8.2 30 11-50 9-39 (266)
253 PF02441 Flavoprotein: Flavopr 66.5 21 0.00046 24.9 5.5 35 80-114 68-119 (129)
254 PRK06113 7-alpha-hydroxysteroi 66.4 18 0.0004 27.9 5.6 41 1-51 1-42 (255)
255 PRK01231 ppnK inorganic polyph 66.4 13 0.00027 30.4 4.7 32 82-113 59-94 (295)
256 cd08550 GlyDH-like Glycerol_de 66.3 26 0.00056 29.0 6.7 30 84-114 76-110 (349)
257 PRK03501 ppnK inorganic polyph 66.1 10 0.00022 30.4 4.1 30 84-113 38-72 (264)
258 cd08175 G1PDH Glycerol-1-phosp 66.0 67 0.0014 26.5 9.1 29 85-114 80-113 (348)
259 PRK02231 ppnK inorganic polyph 65.9 17 0.00036 29.3 5.3 34 80-113 37-74 (272)
260 PLN02935 Bifunctional NADH kin 65.9 13 0.00028 32.7 4.9 31 82-112 259-293 (508)
261 cd08188 Fe-ADH4 Iron-containin 65.8 31 0.00067 28.9 7.2 30 84-114 84-136 (377)
262 PRK08589 short chain dehydroge 65.8 14 0.0003 29.1 4.8 32 11-51 6-37 (272)
263 PRK06182 short chain dehydroge 65.4 26 0.00056 27.4 6.3 73 11-96 3-85 (273)
264 cd08174 G1PDH-like Glycerol-1- 65.4 33 0.00072 28.1 7.2 29 85-114 75-108 (331)
265 cd08173 Gro1PDH Sn-glycerol-1- 64.9 64 0.0014 26.5 8.8 30 85-115 78-112 (339)
266 PLN02206 UDP-glucuronate decar 64.9 29 0.00062 29.9 6.9 14 81-94 179-192 (442)
267 PRK12935 acetoacetyl-CoA reduc 64.8 30 0.00064 26.4 6.5 75 11-95 6-94 (247)
268 PRK06841 short chain dehydroge 64.7 28 0.00062 26.7 6.4 33 11-54 15-48 (255)
269 PF07085 DRTGG: DRTGG domain; 64.7 40 0.00086 22.5 7.0 76 69-147 23-100 (105)
270 PRK06194 hypothetical protein; 64.5 25 0.00054 27.6 6.2 75 11-96 6-94 (287)
271 KOG2941 Beta-1,4-mannosyltrans 64.3 90 0.0019 26.5 11.1 128 9-149 252-402 (444)
272 PRK06180 short chain dehydroge 63.8 34 0.00073 26.9 6.8 74 11-96 4-89 (277)
273 cd08183 Fe-ADH2 Iron-containin 63.8 46 0.00099 27.9 7.8 17 84-101 74-90 (374)
274 PRK05717 oxidoreductase; Valid 63.6 34 0.00073 26.4 6.6 14 11-24 10-23 (255)
275 TIGR01832 kduD 2-deoxy-D-gluco 63.5 34 0.00073 26.1 6.6 33 10-51 4-36 (248)
276 PLN02778 3,5-epimerase/4-reduc 63.5 46 0.001 26.7 7.6 11 11-21 9-19 (298)
277 TIGR03325 BphB_TodD cis-2,3-di 63.5 31 0.00068 26.7 6.5 33 11-54 5-38 (262)
278 PRK08628 short chain dehydroge 63.4 27 0.00058 26.9 6.0 32 10-51 6-38 (258)
279 PLN02986 cinnamyl-alcohol dehy 63.3 46 0.00099 26.7 7.6 75 11-95 5-87 (322)
280 PRK06029 3-octaprenyl-4-hydrox 63.3 36 0.00078 25.8 6.4 50 85-136 78-146 (185)
281 TIGR02329 propionate_PrpR prop 63.2 37 0.00081 30.0 7.4 29 85-114 54-82 (526)
282 KOG1502 Flavonol reductase/cin 63.2 53 0.0011 27.3 7.8 75 10-94 5-87 (327)
283 PRK00002 aroB 3-dehydroquinate 63.1 88 0.0019 26.0 9.4 28 86-114 93-127 (358)
284 PRK05993 short chain dehydroge 63.1 22 0.00047 28.0 5.5 33 11-54 4-37 (277)
285 PRK07775 short chain dehydroge 63.0 25 0.00054 27.6 5.9 42 1-52 1-42 (274)
286 cd08169 DHQ-like Dehydroquinat 63.0 68 0.0015 26.6 8.6 29 85-114 83-118 (344)
287 PRK06138 short chain dehydroge 62.9 27 0.00058 26.7 5.9 31 11-51 5-36 (252)
288 PLN02727 NAD kinase 62.9 15 0.00032 34.8 4.9 35 79-113 737-775 (986)
289 CHL00194 ycf39 Ycf39; Provisio 62.8 80 0.0017 25.4 9.7 17 78-94 57-73 (317)
290 PF13524 Glyco_trans_1_2: Glyc 62.4 12 0.00026 24.1 3.4 51 92-150 9-60 (92)
291 PRK15424 propionate catabolism 62.4 38 0.00083 30.1 7.3 30 84-114 63-92 (538)
292 TIGR00521 coaBC_dfp phosphopan 62.3 86 0.0019 26.7 9.2 54 82-135 75-145 (390)
293 TIGR00045 glycerate kinase. Th 62.1 25 0.00055 29.7 5.9 65 78-148 276-356 (375)
294 PRK12743 oxidoreductase; Provi 62.0 29 0.00064 26.8 6.0 33 11-52 2-34 (256)
295 PRK08264 short chain dehydroge 61.8 66 0.0014 24.3 7.9 70 11-95 6-83 (238)
296 cd08186 Fe-ADH8 Iron-containin 61.7 61 0.0013 27.2 8.2 29 85-114 84-136 (383)
297 PRK07067 sorbitol dehydrogenas 61.7 27 0.00058 26.9 5.8 32 11-51 6-37 (257)
298 PLN02657 3,8-divinyl protochlo 61.6 84 0.0018 26.4 9.1 78 7-94 56-145 (390)
299 COG0300 DltE Short-chain dehyd 61.5 18 0.00039 29.1 4.7 83 8-99 3-98 (265)
300 PRK04761 ppnK inorganic polyph 61.2 11 0.00024 29.9 3.4 30 85-114 25-58 (246)
301 PRK14076 pnk inorganic polypho 61.2 15 0.00033 32.7 4.7 52 84-150 347-402 (569)
302 PRK06523 short chain dehydroge 61.1 59 0.0013 25.0 7.6 31 11-51 9-40 (260)
303 COG1887 TagB Putative glycosyl 61.0 67 0.0014 27.3 8.3 91 76-171 277-386 (388)
304 COG1086 Predicted nucleoside-d 60.9 19 0.00041 32.1 5.1 74 10-93 249-333 (588)
305 TIGR02114 coaB_strep phosphopa 60.6 9.7 0.00021 29.7 3.0 17 81-97 76-92 (227)
306 PRK08125 bifunctional UDP-gluc 60.6 48 0.001 30.0 7.8 17 79-95 376-392 (660)
307 PRK12745 3-ketoacyl-(acyl-carr 60.5 45 0.00097 25.5 6.8 30 12-51 3-33 (256)
308 PRK06482 short chain dehydroge 60.3 34 0.00075 26.7 6.2 13 12-24 3-15 (276)
309 PRK10342 glycerate kinase I; P 60.3 33 0.00071 29.1 6.2 65 78-148 277-357 (381)
310 PLN03063 alpha,alpha-trehalose 60.2 7.1 0.00015 36.3 2.5 65 77-150 367-441 (797)
311 PRK06463 fabG 3-ketoacyl-(acyl 60.1 41 0.00089 25.9 6.6 33 11-53 7-40 (255)
312 PRK05872 short chain dehydroge 59.6 31 0.00068 27.5 5.9 35 10-54 8-42 (296)
313 PRK09423 gldA glycerol dehydro 59.6 48 0.001 27.7 7.2 29 85-114 84-117 (366)
314 PRK06200 2,3-dihydroxy-2,3-dih 59.5 31 0.00068 26.7 5.8 35 10-54 5-39 (263)
315 PF03641 Lysine_decarbox: Poss 59.3 60 0.0013 22.9 11.1 63 71-134 39-112 (133)
316 PRK06484 short chain dehydroge 59.3 35 0.00077 29.5 6.6 36 9-54 267-302 (520)
317 PRK05876 short chain dehydroge 59.2 31 0.00067 27.2 5.8 34 11-54 6-39 (275)
318 PRK08063 enoyl-(acyl carrier p 58.7 31 0.00066 26.3 5.6 74 12-95 5-92 (250)
319 PRK09072 short chain dehydroge 58.6 32 0.00069 26.7 5.7 31 11-51 5-36 (263)
320 PF00731 AIRC: AIR carboxylase 58.5 24 0.00051 25.9 4.5 32 84-115 54-88 (150)
321 PRK08226 short chain dehydroge 58.4 29 0.00062 26.8 5.4 33 11-54 6-39 (263)
322 PRK12829 short chain dehydroge 58.3 41 0.00089 25.8 6.3 77 10-96 10-97 (264)
323 PRK08267 short chain dehydroge 58.1 34 0.00075 26.4 5.8 30 12-51 2-32 (260)
324 PLN02662 cinnamyl-alcohol dehy 58.0 76 0.0017 25.3 8.0 18 78-95 69-86 (322)
325 PRK07231 fabG 3-ketoacyl-(acyl 57.9 39 0.00084 25.7 6.0 74 11-95 5-91 (251)
326 PRK08261 fabG 3-ketoacyl-(acyl 57.8 45 0.00097 28.4 6.9 33 10-51 209-241 (450)
327 cd08195 DHQS Dehydroquinate sy 57.7 1.1E+02 0.0023 25.3 9.2 28 86-114 86-120 (345)
328 PRK08642 fabG 3-ketoacyl-(acyl 57.7 41 0.00088 25.6 6.1 32 11-52 5-37 (253)
329 PRK08085 gluconate 5-dehydroge 57.6 36 0.00079 26.1 5.9 34 10-54 8-42 (254)
330 PLN03139 formate dehydrogenase 57.5 41 0.0009 28.5 6.5 20 76-95 246-265 (386)
331 PLN02166 dTDP-glucose 4,6-dehy 57.4 46 0.001 28.5 6.9 14 81-94 180-193 (436)
332 TIGR01777 yfcH conserved hypot 57.3 45 0.00098 26.0 6.5 17 79-95 51-67 (292)
333 PF01113 DapB_N: Dihydrodipico 57.1 22 0.00048 24.7 4.1 53 77-131 59-115 (124)
334 PRK06550 fabG 3-ketoacyl-(acyl 56.8 82 0.0018 23.7 8.1 67 11-95 5-77 (235)
335 COG2327 WcaK Polysaccharide py 56.7 35 0.00076 29.0 5.8 74 68-149 266-347 (385)
336 PF10686 DUF2493: Protein of u 56.6 48 0.001 20.9 5.3 39 9-54 1-41 (71)
337 cd08190 HOT Hydroxyacid-oxoaci 56.5 78 0.0017 27.0 8.0 17 84-101 79-95 (414)
338 PRK02645 ppnK inorganic polyph 56.4 15 0.00032 30.1 3.5 30 84-113 56-89 (305)
339 PRK12823 benD 1,6-dihydroxycyc 56.4 37 0.0008 26.1 5.7 33 11-54 8-41 (260)
340 PRK07825 short chain dehydroge 56.4 38 0.00081 26.4 5.8 14 11-24 5-18 (273)
341 PRK07024 short chain dehydroge 56.3 40 0.00087 26.0 5.9 32 12-54 3-35 (257)
342 PLN02653 GDP-mannose 4,6-dehyd 56.3 1.1E+02 0.0023 24.8 8.9 18 78-95 74-93 (340)
343 PRK10217 dTDP-glucose 4,6-dehy 56.3 74 0.0016 25.9 7.7 18 78-95 65-84 (355)
344 cd08197 DOIS 2-deoxy-scyllo-in 56.0 1.2E+02 0.0026 25.3 9.3 29 85-114 81-119 (355)
345 PRK12938 acetyacetyl-CoA reduc 56.0 18 0.00039 27.6 3.8 35 11-54 3-37 (246)
346 cd03784 GT1_Gtf_like This fami 55.9 72 0.0016 26.4 7.7 29 85-113 104-133 (401)
347 cd08178 AAD_C C-terminal alcoh 55.7 44 0.00095 28.3 6.4 16 84-100 77-92 (398)
348 cd08192 Fe-ADH7 Iron-containin 55.6 55 0.0012 27.3 6.9 17 84-101 80-96 (370)
349 PLN03209 translocon at the inn 55.5 39 0.00085 30.3 6.2 19 78-96 152-170 (576)
350 PRK07478 short chain dehydroge 55.5 39 0.00085 25.9 5.7 33 11-54 6-39 (254)
351 PRK07060 short chain dehydroge 55.3 49 0.0011 25.1 6.2 75 10-96 8-88 (245)
352 KOG1154 Gamma-glutamyl kinase 55.2 65 0.0014 25.7 6.6 115 9-134 7-147 (285)
353 PRK06398 aldose dehydrogenase; 55.1 22 0.00048 27.6 4.3 31 11-50 6-36 (258)
354 PRK09932 glycerate kinase II; 55.1 43 0.00094 28.4 6.1 65 78-148 277-357 (381)
355 PRK00025 lpxB lipid-A-disaccha 55.0 83 0.0018 25.8 7.9 27 85-111 85-115 (380)
356 PLN02948 phosphoribosylaminoim 54.2 1.6E+02 0.0035 26.4 9.9 123 10-149 21-155 (577)
357 PRK05557 fabG 3-ketoacyl-(acyl 54.2 50 0.0011 24.8 6.1 33 11-53 5-38 (248)
358 COG1090 Predicted nucleoside-d 54.2 25 0.00053 28.7 4.3 65 14-96 1-67 (297)
359 PRK06172 short chain dehydroge 54.2 41 0.00089 25.8 5.7 74 11-95 7-94 (253)
360 cd08172 GlyDH-like1 Glycerol d 54.0 44 0.00096 27.6 6.1 30 84-114 75-109 (347)
361 PRK13394 3-hydroxybutyrate deh 53.9 57 0.0012 25.0 6.4 33 11-54 7-40 (262)
362 PRK06101 short chain dehydroge 53.8 58 0.0013 24.8 6.4 73 12-95 2-81 (240)
363 PRK12825 fabG 3-ketoacyl-(acyl 53.8 46 0.001 25.0 5.8 34 12-55 7-41 (249)
364 cd08179 NADPH_BDH NADPH-depend 53.7 85 0.0019 26.2 7.8 17 84-101 80-96 (375)
365 TIGR01369 CPSaseII_lrg carbamo 53.4 2.2E+02 0.0048 27.6 11.8 135 9-149 552-703 (1050)
366 PRK08177 short chain dehydroge 53.2 66 0.0014 24.2 6.6 73 12-96 2-82 (225)
367 PRK06077 fabG 3-ketoacyl-(acyl 53.1 46 0.001 25.3 5.8 33 11-53 6-39 (252)
368 PRK08410 2-hydroxyacid dehydro 53.1 78 0.0017 25.9 7.3 17 78-94 189-205 (311)
369 TIGR03206 benzo_BadH 2-hydroxy 53.0 46 0.001 25.3 5.7 14 11-24 3-16 (250)
370 PRK09860 putative alcohol dehy 52.6 48 0.001 27.9 6.1 30 84-114 87-139 (383)
371 TIGR03466 HpnA hopanoid-associ 52.0 1.2E+02 0.0026 24.0 8.3 69 13-94 2-73 (328)
372 PRK10565 putative carbohydrate 51.9 1.4E+02 0.003 26.3 9.0 90 11-112 254-354 (508)
373 PRK05866 short chain dehydroge 51.6 39 0.00085 27.0 5.3 13 12-24 41-53 (293)
374 TIGR02622 CDP_4_6_dhtase CDP-g 51.5 73 0.0016 26.0 7.0 18 78-95 66-85 (349)
375 PRK14982 acyl-ACP reductase; P 51.3 38 0.00082 28.3 5.2 34 78-111 208-243 (340)
376 PLN02828 formyltetrahydrofolat 51.2 65 0.0014 26.0 6.3 83 13-104 74-165 (268)
377 PRK08263 short chain dehydroge 51.1 58 0.0013 25.4 6.1 13 12-24 4-16 (275)
378 cd08189 Fe-ADH5 Iron-containin 51.1 79 0.0017 26.4 7.2 17 84-101 82-98 (374)
379 PF01073 3Beta_HSD: 3-beta hyd 51.0 80 0.0017 25.2 7.0 17 78-94 59-75 (280)
380 PF01256 Carb_kinase: Carbohyd 50.9 82 0.0018 24.8 6.8 86 14-110 1-99 (242)
381 PRK12744 short chain dehydroge 49.9 89 0.0019 24.0 7.0 32 11-52 8-40 (257)
382 PF02593 dTMP_synthase: Thymid 49.9 60 0.0013 25.3 5.8 53 83-135 49-106 (217)
383 smart00046 DAGKc Diacylglycero 49.9 17 0.00037 25.3 2.6 31 85-115 49-88 (124)
384 PLN02583 cinnamoyl-CoA reducta 49.7 1.3E+02 0.0028 23.9 8.4 73 11-93 6-86 (297)
385 PRK07666 fabG 3-ketoacyl-(acyl 49.6 64 0.0014 24.4 6.0 75 11-96 7-95 (239)
386 PRK11914 diacylglycerol kinase 49.5 21 0.00045 28.9 3.4 31 84-114 63-97 (306)
387 PRK08936 glucose-1-dehydrogena 49.4 64 0.0014 24.9 6.1 31 10-50 6-37 (261)
388 PRK08220 2,3-dihydroxybenzoate 49.2 1.2E+02 0.0025 23.1 8.1 70 11-96 8-87 (252)
389 COG4221 Short-chain alcohol de 49.2 68 0.0015 25.5 6.0 75 11-95 6-91 (246)
390 KOG1205 Predicted dehydrogenas 49.1 43 0.00093 27.2 5.0 77 11-96 12-102 (282)
391 PRK11150 rfaD ADP-L-glycero-D- 48.9 44 0.00096 26.6 5.2 10 85-94 68-77 (308)
392 PF15024 Glyco_transf_18: Glyc 48.6 22 0.00049 31.6 3.6 81 77-160 333-438 (559)
393 PRK11790 D-3-phosphoglycerate 48.5 79 0.0017 27.0 6.8 21 76-96 194-214 (409)
394 PRK12828 short chain dehydroge 48.4 94 0.002 23.2 6.8 14 11-24 7-20 (239)
395 COG1611 Predicted Rossmann fol 48.2 1.2E+02 0.0026 23.3 7.2 22 81-102 106-128 (205)
396 PRK10538 malonic semialdehyde 48.2 64 0.0014 24.7 5.9 11 85-95 74-84 (248)
397 PRK12937 short chain dehydroge 48.2 73 0.0016 24.1 6.2 32 11-52 5-37 (245)
398 KOG4626 O-linked N-acetylgluco 48.1 7.5 0.00016 35.2 0.6 49 84-135 834-885 (966)
399 KOG1209 1-Acyl dihydroxyaceton 47.8 47 0.001 26.3 4.8 37 8-52 4-40 (289)
400 PRK13059 putative lipid kinase 47.8 20 0.00042 29.0 2.9 31 84-114 55-91 (295)
401 PRK13057 putative lipid kinase 47.7 30 0.00065 27.7 4.0 32 83-114 48-83 (287)
402 COG0451 WcaG Nucleoside-diphos 47.6 1.1E+02 0.0023 24.1 7.2 36 79-114 57-116 (314)
403 PRK12936 3-ketoacyl-(acyl-carr 47.6 75 0.0016 24.0 6.1 14 11-24 6-19 (245)
404 cd07039 TPP_PYR_POX Pyrimidine 47.3 1E+02 0.0023 22.5 6.6 75 36-112 7-96 (164)
405 PF00106 adh_short: short chai 47.2 47 0.001 23.5 4.7 74 12-95 1-90 (167)
406 PRK08217 fabG 3-ketoacyl-(acyl 47.0 69 0.0015 24.3 5.9 32 11-51 5-36 (253)
407 PRK05786 fabG 3-ketoacyl-(acyl 46.6 58 0.0013 24.5 5.4 32 11-52 5-37 (238)
408 PRK06057 short chain dehydroge 46.5 73 0.0016 24.5 6.0 14 11-24 7-20 (255)
409 PRK12742 oxidoreductase; Provi 46.5 75 0.0016 23.9 6.0 75 11-96 6-86 (237)
410 PRK08993 2-deoxy-D-gluconate 3 46.4 1E+02 0.0022 23.7 6.8 31 11-50 10-40 (253)
411 COG0604 Qor NADPH:quinone redu 46.4 47 0.001 27.3 5.0 84 11-103 143-229 (326)
412 cd07038 TPP_PYR_PDC_IPDC_like 46.1 1.1E+02 0.0025 22.2 6.7 75 36-112 4-92 (162)
413 cd08177 MAR Maleylacetate redu 46.0 25 0.00053 29.0 3.3 30 84-114 76-110 (337)
414 smart00822 PKS_KR This enzymat 46.0 1E+02 0.0022 21.5 7.2 13 12-24 1-13 (180)
415 PRK05650 short chain dehydroge 45.5 74 0.0016 24.7 5.9 73 13-96 2-88 (270)
416 PRK10736 hypothetical protein; 45.4 1.1E+02 0.0023 26.0 7.0 67 79-147 214-284 (374)
417 PRK05854 short chain dehydroge 44.9 59 0.0013 26.2 5.4 35 10-54 13-47 (313)
418 PRK00561 ppnK inorganic polyph 44.9 32 0.0007 27.5 3.7 30 84-113 32-65 (259)
419 TIGR00196 yjeF_cterm yjeF C-te 44.8 1.6E+02 0.0034 23.3 9.4 92 10-112 23-126 (272)
420 cd00757 ThiF_MoeB_HesA_family 44.5 96 0.0021 23.9 6.3 36 77-112 103-143 (228)
421 PRK09730 putative NAD(P)-bindi 44.5 86 0.0019 23.6 6.1 33 12-54 2-35 (247)
422 TIGR00715 precor6x_red precorr 44.0 1.6E+02 0.0035 23.4 10.0 91 12-114 1-101 (256)
423 PRK06484 short chain dehydroge 44.0 80 0.0017 27.3 6.4 34 10-54 4-38 (520)
424 PRK07102 short chain dehydroge 43.9 72 0.0016 24.2 5.5 73 12-95 2-86 (243)
425 TIGR01357 aroB 3-dehydroquinat 43.6 1.8E+02 0.004 23.9 9.6 28 86-114 82-116 (344)
426 PLN00141 Tic62-NAD(P)-related 43.5 1.5E+02 0.0032 22.8 7.8 74 9-95 15-95 (251)
427 PRK00048 dihydrodipicolinate r 43.4 1.2E+02 0.0025 24.0 6.7 83 42-135 25-111 (257)
428 TIGR03589 PseB UDP-N-acetylglu 43.4 1.1E+02 0.0023 24.9 6.7 18 78-95 67-84 (324)
429 PRK12826 3-ketoacyl-(acyl-carr 43.2 1.1E+02 0.0023 23.2 6.4 14 11-24 6-19 (251)
430 PRK06718 precorrin-2 dehydroge 43.2 1.2E+02 0.0027 23.0 6.6 32 80-111 65-100 (202)
431 COG3199 Predicted inorganic po 43.1 89 0.0019 26.2 6.0 36 79-114 92-132 (355)
432 PF02882 THF_DHG_CYH_C: Tetrah 43.1 26 0.00056 25.9 2.7 66 46-111 37-105 (160)
433 PLN00016 RNA-binding protein; 43.1 1.9E+02 0.0042 23.9 9.5 34 78-111 121-162 (378)
434 PRK06949 short chain dehydroge 42.9 78 0.0017 24.2 5.6 14 11-24 9-22 (258)
435 PF13241 NAD_binding_7: Putati 42.5 1E+02 0.0022 20.5 5.4 79 11-111 7-91 (103)
436 TIGR01472 gmd GDP-mannose 4,6- 42.5 1.8E+02 0.004 23.5 8.3 18 78-95 69-88 (343)
437 PRK13463 phosphatase PhoE; Pro 42.4 22 0.00047 27.0 2.3 21 88-108 147-167 (203)
438 PLN02572 UDP-sulfoquinovose sy 42.4 71 0.0015 27.4 5.7 34 7-50 43-77 (442)
439 TIGR02690 resist_ArsH arsenica 42.3 1.3E+02 0.0028 23.4 6.6 96 9-114 24-137 (219)
440 PF03435 Saccharop_dh: Sacchar 42.3 1.5E+02 0.0032 24.7 7.5 56 78-136 60-119 (386)
441 PRK05565 fabG 3-ketoacyl-(acyl 42.3 1.1E+02 0.0023 23.1 6.2 76 11-96 5-94 (247)
442 PRK07097 gluconate 5-dehydroge 42.1 94 0.002 24.0 6.0 32 10-50 9-40 (265)
443 PRK14116 gpmA phosphoglyceromu 42.0 19 0.00042 27.9 2.0 20 88-107 178-197 (228)
444 PRK06123 short chain dehydroge 41.5 85 0.0018 23.8 5.6 14 11-24 2-15 (248)
445 PRK07576 short chain dehydroge 41.0 90 0.002 24.2 5.8 15 10-24 8-22 (264)
446 cd01078 NAD_bind_H4MPT_DH NADP 41.0 1.3E+02 0.0029 22.3 6.4 30 78-107 90-121 (194)
447 TIGR00639 PurN phosphoribosylg 40.9 99 0.0021 23.4 5.7 21 78-99 70-92 (190)
448 TIGR03848 MSMEG_4193 probable 40.5 28 0.0006 26.2 2.7 21 88-108 148-168 (204)
449 PF08599 Nbs1_C: DNA damage re 40.3 3.1 6.7E-05 25.7 -2.1 24 78-101 17-40 (65)
450 PRK06701 short chain dehydroge 40.2 1.3E+02 0.0028 23.9 6.6 30 12-51 47-77 (290)
451 PF01118 Semialdhyde_dh: Semia 40.1 1.2E+02 0.0026 20.7 6.6 84 14-109 2-94 (121)
452 COG0163 UbiX 3-polyprenyl-4-hy 39.9 1.7E+02 0.0036 22.4 7.1 50 87-136 83-148 (191)
453 PRK14169 bifunctional 5,10-met 39.9 78 0.0017 25.7 5.2 53 46-98 157-212 (282)
454 PRK02399 hypothetical protein; 39.8 74 0.0016 27.3 5.2 94 7-112 182-278 (406)
455 TIGR02415 23BDH acetoin reduct 39.4 96 0.0021 23.6 5.6 31 12-52 1-32 (254)
456 PRK13054 lipid kinase; Reviewe 39.4 36 0.00079 27.4 3.3 31 84-114 55-93 (300)
457 PRK14119 gpmA phosphoglyceromu 39.3 25 0.00053 27.2 2.2 20 88-107 178-197 (228)
458 PRK00843 egsA NAD(P)-dependent 39.3 51 0.0011 27.4 4.2 30 85-115 87-121 (350)
459 PRK00861 putative lipid kinase 39.0 82 0.0018 25.3 5.3 32 84-115 56-91 (300)
460 PRK06349 homoserine dehydrogen 38.7 2.5E+02 0.0055 24.0 8.6 60 75-135 60-126 (426)
461 TIGR02990 ectoine_eutA ectoine 38.5 1.4E+02 0.003 23.5 6.3 80 96-176 109-208 (239)
462 PRK14118 gpmA phosphoglyceromu 38.4 25 0.00054 27.2 2.1 21 88-108 177-197 (227)
463 PRK12939 short chain dehydroge 38.2 1.3E+02 0.0028 22.7 6.2 30 11-50 7-37 (250)
464 PRK08535 translation initiatio 38.0 1.3E+02 0.0028 24.7 6.3 69 81-149 116-189 (310)
465 PRK06487 glycerate dehydrogena 38.0 1.4E+02 0.0031 24.4 6.6 19 78-96 190-208 (317)
466 TIGR02355 moeB molybdopterin s 37.7 92 0.002 24.4 5.3 34 78-111 107-145 (240)
467 PRK05653 fabG 3-ketoacyl-(acyl 37.7 1.5E+02 0.0033 22.1 6.5 32 12-54 6-38 (246)
468 PRK13337 putative lipid kinase 37.2 73 0.0016 25.7 4.8 31 84-114 56-92 (304)
469 COG3563 KpsC Capsule polysacch 37.2 3E+02 0.0066 24.5 10.8 44 68-114 208-253 (671)
470 PF01513 NAD_kinase: ATP-NAD k 36.8 49 0.0011 26.6 3.6 35 80-114 71-109 (285)
471 PRK06500 short chain dehydroge 36.7 1.2E+02 0.0026 22.9 5.8 33 11-54 6-39 (249)
472 PRK14117 gpmA phosphoglyceromu 36.4 28 0.00061 27.0 2.1 20 88-107 178-197 (230)
473 PRK07577 short chain dehydroge 36.3 1.8E+02 0.0039 21.7 8.9 67 11-95 3-78 (234)
474 PRK13055 putative lipid kinase 36.2 40 0.00087 27.7 3.1 31 84-114 58-94 (334)
475 PF04007 DUF354: Protein of un 35.9 2.6E+02 0.0056 23.3 9.9 36 79-114 75-112 (335)
476 TIGR01181 dTDP_gluc_dehyt dTDP 35.6 1.7E+02 0.0037 22.9 6.7 18 78-95 64-83 (317)
477 PRK15004 alpha-ribazole phosph 35.5 30 0.00064 26.0 2.1 22 87-108 144-165 (199)
478 COG1454 EutG Alcohol dehydroge 35.5 1.1E+02 0.0025 25.9 5.7 31 84-115 85-138 (377)
479 COG0371 GldA Glycerol dehydrog 35.4 60 0.0013 27.4 4.0 30 85-115 84-118 (360)
480 TIGR03162 ribazole_cobC alpha- 35.4 31 0.00067 25.1 2.2 21 87-107 140-160 (177)
481 PTZ00122 phosphoglycerate muta 35.4 35 0.00076 27.8 2.6 20 88-107 236-255 (299)
482 PRK11269 glyoxylate carboligas 35.1 1.6E+02 0.0035 26.3 6.9 75 36-112 11-101 (591)
483 PRK07449 2-succinyl-5-enolpyru 35.1 1.2E+02 0.0026 26.8 6.2 75 36-112 16-105 (568)
484 TIGR01142 purT phosphoribosylg 35.0 2.6E+02 0.0056 23.1 8.9 118 14-149 2-135 (380)
485 PF05693 Glycogen_syn: Glycoge 34.9 63 0.0014 29.3 4.2 35 78-113 462-501 (633)
486 TIGR01161 purK phosphoribosyla 34.9 2.6E+02 0.0055 23.0 8.7 119 14-149 2-132 (352)
487 COG0496 SurE Predicted acid ph 34.8 76 0.0017 25.3 4.3 36 79-114 75-126 (252)
488 PRK08303 short chain dehydroge 34.8 89 0.0019 25.2 4.9 35 10-54 7-41 (305)
489 PRK06198 short chain dehydroge 34.7 1.9E+02 0.0041 22.1 6.6 35 10-54 5-40 (260)
490 cd08180 PDD 1,3-propanediol de 34.6 46 0.001 27.3 3.2 31 84-115 77-119 (332)
491 TIGR01470 cysG_Nterm siroheme 34.5 2.1E+02 0.0045 21.8 6.9 84 11-111 9-100 (205)
492 PRK07035 short chain dehydroge 34.2 1.2E+02 0.0025 23.2 5.3 34 10-54 7-41 (252)
493 PRK08335 translation initiatio 33.9 2E+02 0.0042 23.3 6.6 56 80-136 104-164 (275)
494 KOG1201 Hydroxysteroid 17-beta 33.7 79 0.0017 25.9 4.3 18 10-27 37-54 (300)
495 PRK13010 purU formyltetrahydro 33.6 1.2E+02 0.0026 24.7 5.4 112 12-135 96-226 (289)
496 COG0373 HemA Glutamyl-tRNA red 33.6 50 0.0011 28.4 3.3 79 23-111 186-271 (414)
497 COG0026 PurK Phosphoribosylami 33.4 2.2E+02 0.0047 24.2 6.9 121 12-150 2-134 (375)
498 COG1927 Mtd Coenzyme F420-depe 33.4 2.4E+02 0.0052 22.2 8.3 101 12-136 4-113 (277)
499 PF00289 CPSase_L_chain: Carba 33.3 96 0.0021 21.2 4.2 61 36-100 18-87 (110)
500 PF02826 2-Hacid_dh_C: D-isome 32.9 68 0.0015 23.7 3.7 51 78-148 84-143 (178)
No 1
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=99.98 E-value=7.2e-31 Score=187.79 Aligned_cols=165 Identities=49% Similarity=0.753 Sum_probs=146.6
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-cccccc--ccCCcceEEEEeChhhHHHHhhhcc
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-VPTKSL--GEDGLMAVDYFTFSSSIADHLRSAS 87 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-~~~~~~--~~~~~~nv~v~~~~~~~~~~~~~ad 87 (178)
.+.+|||+||..|+.|++.+...++...|.+.++.++++|.|++.. -+.... .+...-.|..++|.|.|.+.|+.||
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~Ad 82 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRSAD 82 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhhcc
Confidence 5689999999889999999998999999999998899999999842 111111 1123456888999999999999999
Q ss_pred EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccCcccCCCCCCCChhHHHH
Q 042754 88 LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDATPVAK 167 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~~~i~~ 167 (178)
+||+|||+||++|.|..|+|.|+|++...|||||.+.|+.|++.|+.+..++.+|.+.+.++.-..+++|+.++.+.+++
T Consensus 83 lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~L~~~L~~~~~~~Lkpf~~~~~~~~~~ 162 (170)
T KOG3349|consen 83 LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPSTLPAGLAKLDLESLKPFPPSDPENFSK 162 (170)
T ss_pred EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccchHHHHHhhcccccccCCCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred HHHHhcCC
Q 042754 168 LINRFLGF 175 (178)
Q Consensus 168 ~i~~~~~~ 175 (178)
+|.+++++
T Consensus 163 ~l~~~~~~ 170 (170)
T KOG3349|consen 163 FLDAVVGL 170 (170)
T ss_pred HHHHHhcC
Confidence 99988775
No 2
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.2e-29 Score=209.54 Aligned_cols=159 Identities=28% Similarity=0.266 Sum_probs=132.9
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLV 89 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlv 89 (178)
++++|||++||+|+..+++.+ +++...+.+ ++ +++++||++........+..... +++.+|++||.++|++||+|
T Consensus 182 ~~~~ilV~GGS~Ga~~ln~~v--~~~~~~l~~-~~-~v~~~~G~~~~~~~~~~~~~~~~-~~v~~f~~dm~~~~~~ADLv 256 (357)
T COG0707 182 DKKTILVTGGSQGAKALNDLV--PEALAKLAN-RI-QVIHQTGKNDLEELKSAYNELGV-VRVLPFIDDMAALLAAADLV 256 (357)
T ss_pred CCcEEEEECCcchhHHHHHHH--HHHHHHhhh-Ce-EEEEEcCcchHHHHHHHHhhcCc-EEEeeHHhhHHHHHHhccEE
Confidence 799999999999999999999 555666654 55 99999999873333222211222 89999999999999999999
Q ss_pred EecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCc---------ccCC
Q 042754 90 ISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDL---------ESLL 155 (178)
Q Consensus 90 IshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~---------~~~~ 155 (178)
|||+|++|++|++++|+|+|+||++...++||+.||++|+++|++..+ |+++|.+.|.++.+ .+.+
T Consensus 257 IsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~ 336 (357)
T COG0707 257 ISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAK 336 (357)
T ss_pred EeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999999999999999999988899999999999999999753 67889999888752 3567
Q ss_pred CCCCCChh-HHHHHHHHhc
Q 042754 156 PYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 156 ~~~~~~~~-~i~~~i~~~~ 173 (178)
.+..++++ ++++.+++..
T Consensus 337 ~~~~p~aa~~i~~~~~~~~ 355 (357)
T COG0707 337 KLGKPDAAERIADLLLALA 355 (357)
T ss_pred hcCCCCHHHHHHHHHHHHh
Confidence 77888988 9999888754
No 3
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.96 E-value=1.8e-30 Score=193.58 Aligned_cols=139 Identities=32% Similarity=0.416 Sum_probs=105.9
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEE
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVI 90 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvI 90 (178)
+||||+||+|++.+.+.+... ...+... .+ +++++||++.+.+........+.++.+++|+++|.++|+.||+||
T Consensus 1 tilv~gGs~g~~~l~~~v~~~--~~~~~~~~~~~-~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m~~aDlvI 77 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKI--LELLAEKHKNI-QVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELMAAADLVI 77 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCH--HHHHHHHHHHC-CCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHHHHHSEEE
T ss_pred CEEEEECCCCHHHHHHHHHHH--HHHHhhcCCCc-EEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHHHHcCEEE
Confidence 589999999999898887443 3333332 34 899999998654433222222368999999999999999999999
Q ss_pred ecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----eChhhHHHHHHccCcccC
Q 042754 91 SHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-----AHPQSLHQVIAGMDLESL 154 (178)
Q Consensus 91 shaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~l~~~~~ 154 (178)
||||++|++|++++|+|+|+||++.+.++||..||+.+++.|++.. .+++.|.++|.++.....
T Consensus 78 s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~ 146 (167)
T PF04101_consen 78 SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPE 146 (167)
T ss_dssp ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH
T ss_pred eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcH
Confidence 9999999999999999999999998777899999999999999863 357889999999864433
No 4
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.94 E-value=3.2e-26 Score=189.42 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=123.3
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-hhHHHHhhhcc
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS-SSIADHLRSAS 87 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~-~~~~~~~~~ad 87 (178)
+++|+|||++||+|...+++.+ .+++..+.. ++ ++++|||++..+..... ..++.+++|+ ++|+++|++||
T Consensus 183 ~~~~~iLv~GGS~Ga~~in~~~--~~~l~~l~~-~~-~vv~~~G~~~~~~~~~~----~~~~~~~~f~~~~m~~~~~~ad 254 (352)
T PRK12446 183 RKKPVITIMGGSLGAKKINETV--REALPELLL-KY-QIVHLCGKGNLDDSLQN----KEGYRQFEYVHGELPDILAITD 254 (352)
T ss_pred CCCcEEEEECCccchHHHHHHH--HHHHHhhcc-Cc-EEEEEeCCchHHHHHhh----cCCcEEecchhhhHHHHHHhCC
Confidence 4688999999999999999888 444555533 45 99999998754332211 1255678998 68999999999
Q ss_pred EEEecCChHHHHHHHHcCCCEEEEeCCCC-CCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCc------ccCC
Q 042754 88 LVISHAGSGSIFETLRHGKPLIVVVNEDL-MDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDL------ESLL 155 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~iviP~~~~-~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~------~~~~ 155 (178)
++|||||++|++|++++|+|+|++|++++ .++||..||+++++.|++..+ +++.|.+++.++.. .+.+
T Consensus 255 lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~ 334 (352)
T PRK12446 255 FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTALK 334 (352)
T ss_pred EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999999999999743 357999999999999999743 67889988888742 3455
Q ss_pred CCCCCChh-HHHHHHHH
Q 042754 156 PYQPGDAT-PVAKLINR 171 (178)
Q Consensus 156 ~~~~~~~~-~i~~~i~~ 171 (178)
.+..++++ +|++.|++
T Consensus 335 ~~~~~~aa~~i~~~i~~ 351 (352)
T PRK12446 335 KYNGKEAIQTIIDHISE 351 (352)
T ss_pred HcCCCCHHHHHHHHHHh
Confidence 66777888 88888764
No 5
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.87 E-value=2.3e-21 Score=163.15 Aligned_cols=152 Identities=20% Similarity=0.250 Sum_probs=119.6
Q ss_pred CCCCCcEEEEEeCCccH-HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhh
Q 042754 7 SVSLKRIVFVTVGTTCF-DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRS 85 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~~-~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~ 85 (178)
.+.++|.|++|.||.+. .++.+.+ ++++.+.+. ++++.+|. ...... ..+.|+.+.+|+|+ .++++.
T Consensus 233 ~~~d~~~vyvslGt~~~~~~l~~~~-----~~a~~~l~~-~vi~~~~~-~~~~~~----~~p~n~~v~~~~p~-~~~l~~ 300 (406)
T COG1819 233 IPADRPIVYVSLGTVGNAVELLAIV-----LEALADLDV-RVIVSLGG-ARDTLV----NVPDNVIVADYVPQ-LELLPR 300 (406)
T ss_pred hcCCCCeEEEEcCCcccHHHHHHHH-----HHHHhcCCc-EEEEeccc-cccccc----cCCCceEEecCCCH-HHHhhh
Confidence 46789999999999853 3566665 677888886 99999988 322111 25689999999985 799999
Q ss_pred ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----eChhhHHHHHHccCcc--------
Q 042754 86 ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-----AHPQSLHQVIAGMDLE-------- 152 (178)
Q Consensus 86 adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~l~~~-------- 152 (178)
||+||||||+||++|+|++|+|+|++|.. .||..||+++++.|+|.. .+++.|.++|++++.+
T Consensus 301 ad~vI~hGG~gtt~eaL~~gvP~vv~P~~----~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~ 376 (406)
T COG1819 301 ADAVIHHGGAGTTSEALYAGVPLVVIPDG----ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAE 376 (406)
T ss_pred cCEEEecCCcchHHHHHHcCCCEEEecCC----cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999986 589999999999999964 4889999999998621
Q ss_pred c-CCCCCCCChh-HHHHHHHHhcC
Q 042754 153 S-LLPYQPGDAT-PVAKLINRFLG 174 (178)
Q Consensus 153 ~-~~~~~~~~~~-~i~~~i~~~~~ 174 (178)
. .+.....++. .+++.|+++..
T Consensus 377 ~~~~~~~~~~g~~~~a~~le~~~~ 400 (406)
T COG1819 377 RLAEEFKEEDGPAKAADLLEEFAR 400 (406)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHh
Confidence 1 1122333334 78888888653
No 6
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.86 E-value=1.3e-21 Score=163.66 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=102.4
Q ss_pred CCCcEEEEEeCCccH---HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhh
Q 042754 9 SLKRIVFVTVGTTCF---DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRS 85 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~---~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~ 85 (178)
+++|+|+||+||.+. +.+.+.+ ++.+...+. ++++++|....... ..+.|+.+.+|+| +..+|+.
T Consensus 237 ~~~~~v~v~~Gs~~~~~~~~~~~~~-----~~a~~~~~~-~~i~~~g~~~~~~~-----~~~~~v~~~~~~p-~~~ll~~ 304 (401)
T cd03784 237 AGRPPVYVGFGSMVVRDPEALARLD-----VEAVATLGQ-RAILSLGWGGLGAE-----DLPDNVRVVDFVP-HDWLLPR 304 (401)
T ss_pred CCCCcEEEeCCCCcccCHHHHHHHH-----HHHHHHcCC-eEEEEccCcccccc-----CCCCceEEeCCCC-HHHHhhh
Confidence 357899999999853 3455554 455555675 99999998654221 1357999999997 6899999
Q ss_pred ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccC
Q 042754 86 ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMD 150 (178)
Q Consensus 86 adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~ 150 (178)
||++|||||+||++|++++|+|+|++|.. .||..||+++++.|++..+ ++++|.+++++++
T Consensus 305 ~d~~I~hgG~~t~~eal~~GvP~v~~P~~----~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l 370 (401)
T cd03784 305 CAAVVHHGGAGTTAAALRAGVPQLVVPFF----GDQPFWAARVAELGAGPALDPRELTAERLAAALRRLL 370 (401)
T ss_pred hheeeecCCchhHHHHHHcCCCEEeeCCC----CCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHh
Confidence 99999999999999999999999999986 4699999999999998642 6788999998875
No 7
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.84 E-value=1.6e-19 Score=146.62 Aligned_cols=121 Identities=23% Similarity=0.309 Sum_probs=97.5
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCcccccccccCCcceEEEEeCh-hhHHHHhhhc
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS-SSIADHLRSA 86 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~-~~~~~~~~~a 86 (178)
.+++.|||++|+.+.+.+.+.+ +.. ++ ++++. |...... ...|+++.+|. ++|.++|+.|
T Consensus 190 ~~~~~iLv~~gg~~~~~~~~~l---------~~~~~~-~~~v~-g~~~~~~-------~~~ni~~~~~~~~~~~~~m~~a 251 (318)
T PF13528_consen 190 EDEPKILVYFGGGGPGDLIEAL---------KALPDY-QFIVF-GPNAADP-------RPGNIHVRPFSTPDFAELMAAA 251 (318)
T ss_pred CCCCEEEEEeCCCcHHHHHHHH---------HhCCCC-eEEEE-cCCcccc-------cCCCEEEeecChHHHHHHHHhC
Confidence 4678999999998777444333 333 33 66666 8764222 14689999998 8899999999
Q ss_pred cEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHcc
Q 042754 87 SLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGM 149 (178)
Q Consensus 87 dlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l 149 (178)
|+||||||++|++|++++|+|+|++|.+. ..+|..||+++++.|++..+ +++.|.++|+++
T Consensus 252 d~vIs~~G~~t~~Ea~~~g~P~l~ip~~~--~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 252 DLVISKGGYTTISEALALGKPALVIPRPG--QDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CEEEECCCHHHHHHHHHcCCCEEEEeCCC--CchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 99999999999999999999999999874 35899999999999999753 678888888875
No 8
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=1.9e-19 Score=127.23 Aligned_cols=139 Identities=37% Similarity=0.493 Sum_probs=104.3
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEEec
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISH 92 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvIsh 92 (178)
++|||+||. |..+++.+...++ ..+.+.+..++++|.|+.++.+.. ..++.-|++.+.|..++..|++||||
T Consensus 1 mifVTvGst-f~~f~rlv~k~e~-~el~~~i~e~lIvQyGn~d~kpva------gl~v~~F~~~~kiQsli~darIVISH 72 (161)
T COG5017 1 MIFVTVGST-FYPFNRLVLKIEV-LELTELIQEELIVQYGNGDIKPVA------GLRVYGFDKEEKIQSLIHDARIVISH 72 (161)
T ss_pred CeEEEecCc-cchHHHHHhhHHH-HHHHHHhhhheeeeecCCCccccc------ccEEEeechHHHHHHHhhcceEEEec
Confidence 489999987 5555555543332 234444445899999998764422 12444455567899999999999999
Q ss_pred CChHHHHHHHHcCCCEEEEeCCC----CCCchHHHHHHHHHhCCCEEEeCh-hh-HHHHHHccCcccCCCCCC
Q 042754 93 AGSGSIFETLRHGKPLIVVVNED----LMDNHQSELAEELAARKHLYCAHP-QS-LHQVIAGMDLESLLPYQP 159 (178)
Q Consensus 93 aG~~Ti~E~l~~g~P~iviP~~~----~~~~~Q~~nA~~l~~~G~~~~~~~-~~-L~~~i~~l~~~~~~~~~~ 159 (178)
||.||+..++..++|.|++|+.. ++|+||.+.|..|++.|+.+.++| +. |.+.++..-.+..++++.
T Consensus 73 aG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~~L~a~l~~s~~~v~~~~~~ 145 (161)
T COG5017 73 AGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTELVLQAGLQVSVADVLHPFPI 145 (161)
T ss_pred cCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCchhhHHhHhhhhhhhcCCCcc
Confidence 99999999999999999999986 899999999999999999987653 33 566665554555566554
No 9
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.82 E-value=1.5e-19 Score=151.06 Aligned_cols=151 Identities=19% Similarity=0.276 Sum_probs=111.9
Q ss_pred CCCcEEEEEeCCc--cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhc
Q 042754 9 SLKRIVFVTVGTT--CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSA 86 (178)
Q Consensus 9 ~~~~~ilVt~Gs~--~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~a 86 (178)
.++++||||+||. ....+.+.+ ++.+.+.++ ++++++|+....... ...+.|+.+.+|+++ .++|++|
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~-----~~al~~~~~-~~i~~~g~~~~~~~~---~~~~~~v~~~~~~p~-~~ll~~~ 292 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTC-----VEAFRDLDW-HVVLSVGRGVDPADL---GELPPNVEVRQWVPQ-LEILKKA 292 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHH-----HHHHhcCCC-eEEEEECCCCChhHh---ccCCCCeEEeCCCCH-HHHHhhC
Confidence 5689999999985 223344444 556667776 899999876432111 113568999999986 5999999
Q ss_pred cEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCcc-----cCCC
Q 042754 87 SLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDLE-----SLLP 156 (178)
Q Consensus 87 dlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~~-----~~~~ 156 (178)
|++|||||++|++|++++|+|+|++|.. .+|..||+++++.|++..+ ++++|.++|++++.+ +++.
T Consensus 293 ~~~I~hgG~~t~~Eal~~G~P~v~~p~~----~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~ 368 (392)
T TIGR01426 293 DAFITHGGMNSTMEALFNGVPMVAVPQG----ADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRK 368 (392)
T ss_pred CEEEECCCchHHHHHHHhCCCEEecCCc----ccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999999999999986 4799999999999999643 678899999887522 1111
Q ss_pred ----CCCCChh-HHHHHHHHhc
Q 042754 157 ----YQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 157 ----~~~~~~~-~i~~~i~~~~ 173 (178)
+...+.. ++++.|++++
T Consensus 369 l~~~~~~~~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 369 MRAEIREAGGARRAADEIEGFL 390 (392)
T ss_pred HHHHHHHcCCHHHHHHHHHHhh
Confidence 1222333 7778777764
No 10
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.81 E-value=1.2e-18 Score=140.63 Aligned_cols=161 Identities=20% Similarity=0.216 Sum_probs=115.9
Q ss_pred CCCcEEEEEeCCc-cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc---cccCCcceEEEEeChhhHHHHhh
Q 042754 9 SLKRIVFVTVGTT-CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS---LGEDGLMAVDYFTFSSSIADHLR 84 (178)
Q Consensus 9 ~~~~~ilVt~Gs~-~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~---~~~~~~~nv~v~~~~~~~~~~~~ 84 (178)
+++..||||.|+. ...+|...+ .++...+..... ++++++|++.+..... ......++++++.|..+|..+|.
T Consensus 217 pE~~~Ilvs~GGG~dG~eLi~~~--l~A~~~l~~l~~-~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~ 293 (400)
T COG4671 217 PEGFDILVSVGGGADGAELIETA--LAAAQLLAGLNH-KWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFRNDFESLLA 293 (400)
T ss_pred CccceEEEecCCChhhHHHHHHH--HHHhhhCCCCCc-ceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHH
Confidence 5678899999864 334566666 233333333332 4999999998643221 11122478999999999999999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----eChhhHHHHHHccCccc--CCCC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-----AHPQSLHQVIAGMDLES--LLPY 157 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~l~~~~--~~~~ 157 (178)
.|+.+||.||+||++|.|++|+|+++||+.... .+|...|++++++|+.-. ++++.|+++|..+.... -++.
T Consensus 294 gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~-eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~~~~~~ 372 (400)
T COG4671 294 GARLVVSMGGYNTVCEILSFGKPALIVPRAAPR-EEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPSPSKPH 372 (400)
T ss_pred hhheeeecccchhhhHHHhCCCceEEeccCCCc-HHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCCCCccc
Confidence 999999999999999999999999999997654 489999999999999843 47888999998876421 1111
Q ss_pred CCCChh-HHHHHHHHhc
Q 042754 158 QPGDAT-PVAKLINRFL 173 (178)
Q Consensus 158 ~~~~~~-~i~~~i~~~~ 173 (178)
-+-+.. .++..|.+++
T Consensus 373 L~L~G~~~~a~~l~e~L 389 (400)
T COG4671 373 LDLEGLEHIARILAELL 389 (400)
T ss_pred cCchhhHhHHHHHHHHh
Confidence 222333 6777665554
No 11
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.80 E-value=1.2e-18 Score=150.44 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=100.1
Q ss_pred CcEEEEEeCCcc-----HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHh--
Q 042754 11 KRIVFVTVGTTC-----FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHL-- 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~-----~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~-- 83 (178)
+++|+||+||.. ..++.+.+ +++++..+. ++++.++..... . ..+.|+.+.+|+|+ .++|
T Consensus 296 ~g~V~vS~GS~~~~~~~~~~~~~~~-----l~a~~~l~~-~viw~~~~~~~~-~-----~~p~Nv~i~~w~Pq-~~lL~h 362 (507)
T PHA03392 296 NGVVYVSFGSSIDTNDMDNEFLQML-----LRTFKKLPY-NVLWKYDGEVEA-I-----NLPANVLTQKWFPQ-RAVLKH 362 (507)
T ss_pred CcEEEEECCCCCcCCCCCHHHHHHH-----HHHHHhCCC-eEEEEECCCcCc-c-----cCCCceEEecCCCH-HHHhcC
Confidence 469999999963 23455555 567777776 899988854321 1 13579999999997 6888
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----eChhhHHHHHHccC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-----AHPQSLHQVIAGMD 150 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~l~ 150 (178)
++|+++|||||.||++|++++|+|+|++|.. .||..||++++++|+|+. .+.++|.++|++++
T Consensus 363 p~v~~fItHGG~~s~~Eal~~GvP~v~iP~~----~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl 430 (507)
T PHA03392 363 KNVKAFVTQGGVQSTDEAIDALVPMVGLPMM----GDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVI 430 (507)
T ss_pred CCCCEEEecCCcccHHHHHHcCCCEEECCCC----ccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHh
Confidence 6799999999999999999999999999986 489999999999999974 37789999998885
No 12
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.79 E-value=4.6e-18 Score=138.95 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=91.9
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh-hHHHHhhhccE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS-SIADHLRSASL 88 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~-~~~~~~~~adl 88 (178)
+++.|||++|+++.+.+.+.+ ...+ .+.+++|....... ..+.|+.+++|.+ +|.++|+.||+
T Consensus 187 ~~~~iLv~~g~~~~~~l~~~l---------~~~~--~~~~i~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~~ad~ 250 (321)
T TIGR00661 187 GEDYILVYIGFEYRYKILELL---------GKIA--NVKFVCYSYEVAKN-----SYNENVEIRRITTDNFKELIKNAEL 250 (321)
T ss_pred CCCcEEEECCcCCHHHHHHHH---------HhCC--CeEEEEeCCCCCcc-----ccCCCEEEEECChHHHHHHHHhCCE
Confidence 468899999998876665443 3322 34556664332111 1246899999985 89999999999
Q ss_pred EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHcc
Q 042754 89 VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGM 149 (178)
Q Consensus 89 vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l 149 (178)
+|||||++|++|++++|+|+|++|.+. ..||..||+.++++|+++.++..++ +.++.+
T Consensus 251 vI~~~G~~t~~Ea~~~g~P~l~ip~~~--~~eQ~~na~~l~~~g~~~~l~~~~~-~~~~~~ 308 (321)
T TIGR00661 251 VITHGGFSLISEALSLGKPLIVIPDLG--QFEQGNNAVKLEDLGCGIALEYKEL-RLLEAI 308 (321)
T ss_pred EEECCChHHHHHHHHcCCCEEEEcCCC--cccHHHHHHHHHHCCCEEEcChhhH-HHHHHH
Confidence 999999999999999999999999873 4589999999999999987755555 434433
No 13
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.76 E-value=7.2e-18 Score=140.80 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=114.6
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHH-----hCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHh
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELT-----RRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHL 83 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~-----~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~ 83 (178)
+++++|++++|+.|.+.+...+ ..+...+. ..+. +++++||.+..............++++.+|+++|+++|
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li--~~l~~~~~~~~~~~~~~-~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~ 280 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETA--RALGDSLYDKNLGKPIG-QVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM 280 (382)
T ss_pred CCCcEEEEECCCcccccHHHHH--HHHHHhhccccccCCCc-eEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH
Confidence 4678899999988766555554 11122220 2334 78889998742111111001124688999999999999
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccCc----------c
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMDL----------E 152 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~~----------~ 152 (178)
++||++|+.+|++|++|++++|+|+|+.+.. .+||..|+..+.+.|.++. .+++.|.++|.++.. .
T Consensus 281 ~aaDv~V~~~g~~ti~EAma~g~PvI~~~~~---pgqe~gn~~~i~~~g~g~~~~~~~~la~~i~~ll~~~~~~~~~m~~ 357 (382)
T PLN02605 281 GACDCIITKAGPGTIAEALIRGLPIILNGYI---PGQEEGNVPYVVDNGFGAFSESPKEIARIVAEWFGDKSDELEAMSE 357 (382)
T ss_pred HhCCEEEECCCcchHHHHHHcCCCEEEecCC---CccchhhHHHHHhCCceeecCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999998653 3667789999999999875 488999999887742 2
Q ss_pred cCCCCCCCChh-HHHHHHHHhc
Q 042754 153 SLLPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 153 ~~~~~~~~~~~-~i~~~i~~~~ 173 (178)
+.+.+..++++ +|++.|.+.+
T Consensus 358 ~~~~~~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 358 NALKLARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHhcCCchHHHHHHHHHHHh
Confidence 33455667777 9998888764
No 14
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.76 E-value=8.6e-18 Score=140.85 Aligned_cols=154 Identities=14% Similarity=0.207 Sum_probs=113.0
Q ss_pred CCCcEEEEEeCCccH-HHHHHHhccHHHHHHHHh-CCCCeEEEEEeCCCcc--cccccccCCcceEEEEeChhhHHHHhh
Q 042754 9 SLKRIVFVTVGTTCF-DALVKAVDTLEVKQELTR-RGYTHLLIQMGRGTYV--PTKSLGEDGLMAVDYFTFSSSIADHLR 84 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~-~~l~~~~~~~~~~~~l~~-~~~~~vvv~~G~~~~~--~~~~~~~~~~~nv~v~~~~~~~~~~~~ 84 (178)
++++++++++|+.|. +.+...+. .+ +.. .+. +++++||.+... ...... ....++.+.+|+++|.++|+
T Consensus 200 ~~~~~ilv~~G~lg~~k~~~~li~--~~---~~~~~~~-~~vvv~G~~~~l~~~l~~~~-~~~~~v~~~G~~~~~~~~~~ 272 (391)
T PRK13608 200 PDKQTILMSAGAFGVSKGFDTMIT--DI---LAKSANA-QVVMICGKSKELKRSLTAKF-KSNENVLILGYTKHMNEWMA 272 (391)
T ss_pred CCCCEEEEECCCcccchhHHHHHH--HH---HhcCCCc-eEEEEcCCCHHHHHHHHHHh-ccCCCeEEEeccchHHHHHH
Confidence 467889999999874 55544441 11 122 344 888899987421 111111 12347899999999999999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEE-eCCCCCCchHHHHHHHHHhCCCEEEe-ChhhHHHHHHccCc---------cc
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVV-VNEDLMDNHQSELAEELAARKHLYCA-HPQSLHQVIAGMDL---------ES 153 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~ivi-P~~~~~~~~Q~~nA~~l~~~G~~~~~-~~~~L~~~i~~l~~---------~~ 153 (178)
.||++|+++|+.|++|++++|+|+|++ |.+ ++|..|+.++.+.|+++.. +++++.++|.++.+ .+
T Consensus 273 ~aDl~I~k~gg~tl~EA~a~G~PvI~~~~~p----gqe~~N~~~~~~~G~g~~~~~~~~l~~~i~~ll~~~~~~~~m~~~ 348 (391)
T PRK13608 273 SSQLMITKPGGITISEGLARCIPMIFLNPAP----GQELENALYFEEKGFGKIADTPEEAIKIVASLTNGNEQLTNMIST 348 (391)
T ss_pred hhhEEEeCCchHHHHHHHHhCCCEEECCCCC----CcchhHHHHHHhCCcEEEeCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999999999999999999997 543 5688999999999999754 88889988887742 23
Q ss_pred CCCCCCCChh-HHHHHHHHhc
Q 042754 154 LLPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 154 ~~~~~~~~~~-~i~~~i~~~~ 173 (178)
...+..+++. ++++.+.+.+
T Consensus 349 ~~~~~~~~s~~~i~~~l~~l~ 369 (391)
T PRK13608 349 MEQDKIKYATQTICRDLLDLI 369 (391)
T ss_pred HHHhcCCCCHHHHHHHHHHHh
Confidence 3455556666 8888887765
No 15
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=99.75 E-value=1.6e-17 Score=142.96 Aligned_cols=124 Identities=18% Similarity=0.198 Sum_probs=91.9
Q ss_pred CCCcEEEEEeCCccH---HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHh--
Q 042754 9 SLKRIVFVTVGTTCF---DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHL-- 83 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~---~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~-- 83 (178)
.++++|+|++||... ....+.+ ++.+...+. ++++.+..... .. .+.|+.+.+|+|+ .++|
T Consensus 274 ~~~~vv~vsfGs~~~~~~~~~~~~~-----~~~~~~~~~-~~iW~~~~~~~--~~-----l~~n~~~~~W~PQ-~~lL~h 339 (500)
T PF00201_consen 274 GKKGVVYVSFGSIVSSMPEEKLKEI-----AEAFENLPQ-RFIWKYEGEPP--EN-----LPKNVLIVKWLPQ-NDLLAH 339 (500)
T ss_dssp TTTEEEEEE-TSSSTT-HHHHHHHH-----HHHHHCSTT-EEEEEETCSHG--CH-----HHTTEEEESS--H-HHHHTS
T ss_pred CCCCEEEEecCcccchhHHHHHHHH-----HHHHhhCCC-ccccccccccc--cc-----ccceEEEeccccc-hhhhhc
Confidence 467899999999631 2223333 567777785 99998877322 11 2468999999998 5888
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMD 150 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~ 150 (178)
++.+++|||||.+|+.|++++|+|+|++|.. +||..||+++++.|+|+.+ +.++|.++|++++
T Consensus 340 p~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~----~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl 407 (500)
T PF00201_consen 340 PRVKLFITHGGLNSTQEALYHGVPMLGIPLF----GDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVL 407 (500)
T ss_dssp TTEEEEEES--HHHHHHHHHCT--EEE-GCS----TTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHH
T ss_pred ccceeeeeccccchhhhhhhccCCccCCCCc----ccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHH
Confidence 5678999999999999999999999999986 5899999999999999753 7889999999885
No 16
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.74 E-value=9.2e-17 Score=132.45 Aligned_cols=160 Identities=23% Similarity=0.268 Sum_probs=116.4
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccE
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASL 88 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adl 88 (178)
++.++|++++|+.+.+.+.+.+ .+++..+.+. . .+++++|............ .+.++++.+|++++.++|+.||+
T Consensus 181 ~~~~~i~~~gg~~~~~~~~~~l--~~a~~~~~~~-~-~~~~~~G~g~~~~~~~~~~-~~~~v~~~g~~~~~~~~~~~~d~ 255 (357)
T PRK00726 181 EGKPTLLVVGGSQGARVLNEAV--PEALALLPEA-L-QVIHQTGKGDLEEVRAAYA-AGINAEVVPFIDDMAAAYAAADL 255 (357)
T ss_pred CCCeEEEEECCcHhHHHHHHHH--HHHHHHhhhC-c-EEEEEcCCCcHHHHHHHhh-cCCcEEEeehHhhHHHHHHhCCE
Confidence 3567778877776555444444 2223444332 2 5678899876432221111 23348889999889999999999
Q ss_pred EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCc---------ccC
Q 042754 89 VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDL---------ESL 154 (178)
Q Consensus 89 vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~---------~~~ 154 (178)
+|+++|.+|++|++++|+|+|++|..+...+||..|++.+.+.|.++.+ +++.|.++|++++. .+.
T Consensus 256 ~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~ 335 (357)
T PRK00726 256 VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAA 335 (357)
T ss_pred EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 9999999999999999999999998654557899999999999999754 38899999998752 233
Q ss_pred CCCCCCChh-HHHHHHHHhc
Q 042754 155 LPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 155 ~~~~~~~~~-~i~~~i~~~~ 173 (178)
+.+...++. ++++.+.+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~ 355 (357)
T PRK00726 336 RALGKPDAAERLADLIEELA 355 (357)
T ss_pred HhcCCcCHHHHHHHHHHHHh
Confidence 455666666 8888887764
No 17
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.71 E-value=2.2e-16 Score=129.35 Aligned_cols=157 Identities=25% Similarity=0.277 Sum_probs=111.8
Q ss_pred CCCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhcc
Q 042754 8 VSLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSAS 87 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~ad 87 (178)
++++++|++++|+.+.+.+.+.+ .+++..+...+. ++++++|................|+++.+|+.++.++|+.||
T Consensus 178 ~~~~~~i~~~~g~~~~~~~~~~l--~~a~~~l~~~~~-~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad 254 (350)
T cd03785 178 RPGKPTLLVFGGSQGARAINEAV--PEALAELLRKRL-QVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAYAAAD 254 (350)
T ss_pred CCCCeEEEEECCcHhHHHHHHHH--HHHHHHhhccCe-EEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHHHhcC
Confidence 34567788888887655444444 223444543444 677788887432211111111358999999989999999999
Q ss_pred EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCc---------cc
Q 042754 88 LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDL---------ES 153 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~---------~~ 153 (178)
++|+++|.+|++|++++|+|+|++|.+...+++|..|++.+.+.|.++.+ +++.|.++|+++.. .+
T Consensus 255 ~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (350)
T cd03785 255 LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEA 334 (350)
T ss_pred EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999999988754568999999999999988643 68899999987742 22
Q ss_pred CCCCCCCChh-HHHH
Q 042754 154 LLPYQPGDAT-PVAK 167 (178)
Q Consensus 154 ~~~~~~~~~~-~i~~ 167 (178)
.+.+...++. +|++
T Consensus 335 ~~~~~~~~~~~~i~~ 349 (350)
T cd03785 335 ARSLARPDAAERIAD 349 (350)
T ss_pred HHhcCCCCHHHHHHh
Confidence 3445555555 6665
No 18
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.69 E-value=1.2e-16 Score=128.53 Aligned_cols=107 Identities=19% Similarity=0.199 Sum_probs=77.9
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccccc-cccCCcceEEEEeChhhHHHHhhhcc
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKS-LGEDGLMAVDYFTFSSSIADHLRSAS 87 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~-~~~~~~~nv~v~~~~~~~~~~~~~ad 87 (178)
.+.|||++|+.+...+...+ ++.+.. .++ ++.+++|++....... .......|+++++|+++|.++|+.||
T Consensus 170 ~~~iLi~~GG~d~~~~~~~~-----l~~l~~~~~~~-~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aD 243 (279)
T TIGR03590 170 LRRVLVSFGGADPDNLTLKL-----LSALAESQINI-SITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEAD 243 (279)
T ss_pred cCeEEEEeCCcCCcCHHHHH-----HHHHhccccCc-eEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCC
Confidence 47899999865443343333 222222 344 8999999876432110 00012358999999999999999999
Q ss_pred EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHH
Q 042754 88 LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEEL 128 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l 128 (178)
++||+|| +|++|++++|+|+|++|.. ++|..||++|
T Consensus 244 l~Is~~G-~T~~E~~a~g~P~i~i~~~----~nQ~~~a~~~ 279 (279)
T TIGR03590 244 LAIGAAG-STSWERCCLGLPSLAICLA----ENQQSNSQQL 279 (279)
T ss_pred EEEECCc-hHHHHHHHcCCCEEEEEec----ccHHHHhhhC
Confidence 9999988 9999999999999999985 3588999864
No 19
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.67 E-value=1.3e-15 Score=128.11 Aligned_cols=156 Identities=17% Similarity=0.139 Sum_probs=108.1
Q ss_pred CCCcEEEEEeCCccHHHHHH--HhccHHHHHHHHh-CCCCeEEEEE-eCCCccccccccc--CC--------------cc
Q 042754 9 SLKRIVFVTVGTTCFDALVK--AVDTLEVKQELTR-RGYTHLLIQM-GRGTYVPTKSLGE--DG--------------LM 68 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~--~~~~~~~~~~l~~-~~~~~vvv~~-G~~~~~~~~~~~~--~~--------------~~ 68 (178)
++.++|++.+||.+.+.... .+ .++++.+.+ .++ ++++++ |............ .. ..
T Consensus 203 ~~~~~lllLpGSR~ae~~~~lp~~--l~al~~L~~~~~~-~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 279 (396)
T TIGR03492 203 TGRFRIALLPGSRPPEAYRNLKLL--LRALEALPDSQPF-VFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKG 279 (396)
T ss_pred CCCCEEEEECCCCHHHHHccHHHH--HHHHHHHhhCCCe-EEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccC
Confidence 45689999999997664433 44 334455543 355 888888 5443222110000 00 12
Q ss_pred eEEEEeChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC----CCEEEe---Chhh
Q 042754 69 AVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR----KHLYCA---HPQS 141 (178)
Q Consensus 69 nv~v~~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~----G~~~~~---~~~~ 141 (178)
++++..|.++|.++|++||++|+++|+.| .|+..+|+|+|++|++ +||. ||..+++. |.++.+ +++.
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~----~~q~-na~~~~~~~~l~g~~~~l~~~~~~~ 353 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMAGTAT-EQAVGLGKPVIQLPGK----GPQF-TYGFAEAQSRLLGGSVFLASKNPEQ 353 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECcCHHH-HHHHHhCCCEEEEeCC----CCHH-HHHHHHhhHhhcCCEEecCCCCHHH
Confidence 36777888899999999999999999877 9999999999999975 6897 99888874 655433 5678
Q ss_pred HHHHHHccCc----------ccCCCCCCCChh-HHHHHHHHhc
Q 042754 142 LHQVIAGMDL----------ESLLPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 142 L~~~i~~l~~----------~~~~~~~~~~~~-~i~~~i~~~~ 173 (178)
|.+.+.+++. ...+.+..++++ ++++.|.+.+
T Consensus 354 l~~~l~~ll~d~~~~~~~~~~~~~~lg~~~a~~~ia~~i~~~~ 396 (396)
T TIGR03492 354 AAQVVRQLLADPELLERCRRNGQERMGPPGASARIAESILKQL 396 (396)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhC
Confidence 8888877742 122356667787 9999887653
No 20
>PLN02210 UDP-glucosyl transferase
Probab=99.66 E-value=1e-15 Score=130.77 Aligned_cols=130 Identities=16% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCcEEEEEeCCcc--HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc--ccccccccCC-cceEEEEeChhhHHHHh
Q 042754 9 SLKRIVFVTVGTTC--FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY--VPTKSLGEDG-LMAVDYFTFSSSIADHL 83 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~--~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~--~~~~~~~~~~-~~nv~v~~~~~~~~~~~ 83 (178)
+++++|+|++||.. .....+.+ ...|...+. +++++++.... ...... ... +.+..+.+|+|+ .+++
T Consensus 267 ~~~svvyvsfGS~~~~~~~~~~e~-----a~~l~~~~~-~flw~~~~~~~~~~~~~~~-~~~~~~~g~v~~w~PQ-~~iL 338 (456)
T PLN02210 267 ARSSVVYISFGSMLESLENQVETI-----AKALKNRGV-PFLWVIRPKEKAQNVQVLQ-EMVKEGQGVVLEWSPQ-EKIL 338 (456)
T ss_pred CCCceEEEEecccccCCHHHHHHH-----HHHHHhCCC-CEEEEEeCCccccchhhHH-hhccCCCeEEEecCCH-HHHh
Confidence 44679999999972 23334443 456667785 99998885321 111000 000 134457799998 5899
Q ss_pred hhcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE---------eChhhHHHHHHccC
Q 042754 84 RSAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC---------AHPQSLHQVIAGMD 150 (178)
Q Consensus 84 ~~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~---------~~~~~L~~~i~~l~ 150 (178)
++++ ++|||||.||++|++++|+|+|++|.. .||..||+++++ .|+|+. .+.++|.++|++++
T Consensus 339 ~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~----~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 339 SHMAISCFVTHCGWNSTIETVVAGVPVVAYPSW----TDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred cCcCcCeEEeeCCcccHHHHHHcCCCEEecccc----cccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 9998 999999999999999999999999986 589999999998 799863 36788999998885
No 21
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=8.4e-16 Score=127.90 Aligned_cols=155 Identities=15% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCCcEEEEEeCCccH-HHHHHHhccHHHHHHHHh-CCCCeEEEEEeCCCccccc--ccccCCcceEEEEeChhhHHHHhh
Q 042754 9 SLKRIVFVTVGTTCF-DALVKAVDTLEVKQELTR-RGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYFTFSSSIADHLR 84 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~-~~l~~~~~~~~~~~~l~~-~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~~~~~~~~~~~~ 84 (178)
++++++++++|+.+. +.+...+ +.+.. .++ ++++++|.+...... ......+.++++.+|++++.++|+
T Consensus 200 ~~~~~il~~~G~~~~~k~~~~li------~~l~~~~~~-~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~ 272 (380)
T PRK13609 200 PNKKILLIMAGAHGVLGNVKELC------QSLMSVPDL-QVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR 272 (380)
T ss_pred CCCcEEEEEcCCCCCCcCHHHHH------HHHhhCCCc-EEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH
Confidence 356789999998764 2333332 23332 344 888888865321111 101112358999999999999999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEE-eCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccCc---------cc
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVV-VNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMDL---------ES 153 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~ivi-P~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~~---------~~ 153 (178)
.||++|+++|+.|++|++++|+|+|+. |.+ ++|.+|+..+.+.|+++. .++++|.++|.++.. .+
T Consensus 273 ~aD~~v~~~gg~t~~EA~a~g~PvI~~~~~~----g~~~~n~~~~~~~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~ 348 (380)
T PRK13609 273 VTSCMITKPGGITLSEAAALGVPVILYKPVP----GQEKENAMYFERKGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEA 348 (380)
T ss_pred hccEEEeCCCchHHHHHHHhCCCEEECCCCC----CcchHHHHHHHhCCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 999999999999999999999998874 433 468899999999999875 488999999888742 22
Q ss_pred CCCCCCCChh-HHHHHHHHhcC
Q 042754 154 LLPYQPGDAT-PVAKLINRFLG 174 (178)
Q Consensus 154 ~~~~~~~~~~-~i~~~i~~~~~ 174 (178)
.+.+..+++. ++++.+++.++
T Consensus 349 ~~~~~~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 349 MKSLYLPEPADHIVDDILAENH 370 (380)
T ss_pred HHHhCCCchHHHHHHHHHHhhh
Confidence 3345555666 99998888764
No 22
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.65 E-value=1.4e-15 Score=130.11 Aligned_cols=128 Identities=13% Similarity=0.095 Sum_probs=94.0
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhc
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSA 86 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~a 86 (178)
+++++|+|++||... ....+.+ +..|...+. +++++...... .... ....|..+.+|+|+ .++|+++
T Consensus 272 ~~~~vvyvsfGs~~~~~~~~~~~~-----~~~l~~~~~-~~lw~~~~~~~-~~~~---~~~~~~~v~~w~pQ-~~iL~h~ 340 (459)
T PLN02448 272 PEGSVLYVSLGSFLSVSSAQMDEI-----AAGLRDSGV-RFLWVARGEAS-RLKE---ICGDMGLVVPWCDQ-LKVLCHS 340 (459)
T ss_pred CCCceEEEeecccccCCHHHHHHH-----HHHHHhCCC-CEEEEEcCchh-hHhH---hccCCEEEeccCCH-HHHhccC
Confidence 346799999998721 2233333 567777786 88876543211 1110 01246788899997 6899887
Q ss_pred cE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEE----------eChhhHHHHHHccCc
Q 042754 87 SL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR-KHLYC----------AHPQSLHQVIAGMDL 151 (178)
Q Consensus 87 dl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~-G~~~~----------~~~~~L~~~i~~l~~ 151 (178)
++ +|||||.||++|++++|+|+|++|.. .+|..||+++++. |+|+. .+.++|.+++++++.
T Consensus 341 ~v~~fvtHgG~nS~~eal~~GvP~l~~P~~----~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~ 414 (459)
T PLN02448 341 SVGGFWTHCGWNSTLEAVFAGVPMLTFPLF----WDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMD 414 (459)
T ss_pred ccceEEecCchhHHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhc
Confidence 76 99999999999999999999999975 5899999999984 66643 266889999998863
No 23
>PLN02207 UDP-glycosyltransferase
Probab=99.64 E-value=2.3e-15 Score=128.60 Aligned_cols=130 Identities=19% Similarity=0.182 Sum_probs=95.4
Q ss_pred CCCcEEEEEeCCcc--HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-----ccccccccCCcceEEEEeChhhHHH
Q 042754 9 SLKRIVFVTVGTTC--FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-----VPTKSLGEDGLMAVDYFTFSSSIAD 81 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~--~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-----~~~~~~~~~~~~nv~v~~~~~~~~~ 81 (178)
+++.+|+|++||.. .....+.+ ...|...+. +|+++...... .+... ..+.+.|..+.+|.|+ .+
T Consensus 273 ~~~sVVyvSfGS~~~~~~~q~~el-----a~~l~~~~~-~flW~~r~~~~~~~~~lp~~f-~er~~~~g~i~~W~PQ-~~ 344 (468)
T PLN02207 273 PEASVVFLCFGSMGRLRGPLVKEI-----AHGLELCQY-RFLWSLRTEEVTNDDLLPEGF-LDRVSGRGMICGWSPQ-VE 344 (468)
T ss_pred CCCcEEEEEeccCcCCCHHHHHHH-----HHHHHHCCC-cEEEEEeCCCccccccCCHHH-HhhcCCCeEEEEeCCH-HH
Confidence 44679999999973 22233333 456667776 89998884221 01110 0112456778899998 58
Q ss_pred HhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE------------eChhhHHHHH
Q 042754 82 HLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC------------AHPQSLHQVI 146 (178)
Q Consensus 82 ~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~------------~~~~~L~~~i 146 (178)
++++..+ +|||||.||++|++++|+|+|.+|.. .||..||+++++ .|+|+. .+.++|.++|
T Consensus 345 IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av 420 (468)
T PLN02207 345 ILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMY----AEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAI 420 (468)
T ss_pred HhcccccceeeecCccccHHHHHHcCCCEEecCcc----ccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHH
Confidence 8987555 99999999999999999999999986 589999999887 788861 3678899999
Q ss_pred HccC
Q 042754 147 AGMD 150 (178)
Q Consensus 147 ~~l~ 150 (178)
++++
T Consensus 421 ~~vm 424 (468)
T PLN02207 421 RCVM 424 (468)
T ss_pred HHHH
Confidence 8886
No 24
>PLN02562 UDP-glycosyltransferase
Probab=99.63 E-value=3.4e-15 Score=127.30 Aligned_cols=128 Identities=12% Similarity=0.122 Sum_probs=95.2
Q ss_pred CcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc--ccccccccCCcceEEEEeChhhHHHHhhh
Q 042754 11 KRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY--VPTKSLGEDGLMAVDYFTFSSSIADHLRS 85 (178)
Q Consensus 11 ~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~--~~~~~~~~~~~~nv~v~~~~~~~~~~~~~ 85 (178)
+.+|+|++||.. .....+.+ ...|...+. +++++...... .+... ..+.+.|+.+.+|+|+ .+++++
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l-----~~~l~~~g~-~fiW~~~~~~~~~l~~~~-~~~~~~~~~v~~w~PQ-~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTL-----ALALEASGR-PFIWVLNPVWREGLPPGY-VERVSKQGKVVSWAPQ-LEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHH-----HHHHHHCCC-CEEEEEcCCchhhCCHHH-HHHhccCEEEEecCCH-HHHhCC
Confidence 468999999963 22334444 456666775 88887754211 11110 0112457888999997 699988
Q ss_pred cc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE---eChhhHHHHHHccC
Q 042754 86 AS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 86 ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~---~~~~~L~~~i~~l~ 150 (178)
++ ++|||||.||++|++++|+|+|++|.. .||..||+++++ .|+++. .+.+++.++|++++
T Consensus 345 ~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l 411 (448)
T PLN02562 345 QAVGCYLTHCGWNSTMEAIQCQKRLLCYPVA----GDQFVNCAYIVDVWKIGVRISGFGQKEVEEGLRKVM 411 (448)
T ss_pred CccceEEecCcchhHHHHHHcCCCEEeCCcc----cchHHHHHHHHHHhCceeEeCCCCHHHHHHHHHHHh
Confidence 66 799999999999999999999999986 589999999987 488865 37889999998885
No 25
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.61 E-value=2.2e-15 Score=129.53 Aligned_cols=130 Identities=17% Similarity=0.162 Sum_probs=94.3
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc----------------ccccccccCCcceE
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY----------------VPTKSLGEDGLMAV 70 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~----------------~~~~~~~~~~~~nv 70 (178)
+.+.+|+|++||... ....+.+ ...|...+. +++++++.... .+... ..+...|.
T Consensus 272 ~~~svvyvsfGS~~~~~~~~~~~l-----a~~l~~~~~-~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~~r~~~~g 344 (481)
T PLN02554 272 PPKSVVFLCFGSMGGFSEEQAREI-----AIALERSGH-RFLWSLRRASPNIMKEPPGEFTNLEEILPEGF-LDRTKDIG 344 (481)
T ss_pred CCCcEEEEeccccccCCHHHHHHH-----HHHHHHcCC-CeEEEEcCCcccccccccccccchhhhCChHH-HHHhccCc
Confidence 345689999999721 2233333 456666775 89998864210 01000 00123567
Q ss_pred EEEeChhhHHHHh--hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHH-HHHhCCCEEE-----------
Q 042754 71 DYFTFSSSIADHL--RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAE-ELAARKHLYC----------- 136 (178)
Q Consensus 71 ~v~~~~~~~~~~~--~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~-~l~~~G~~~~----------- 136 (178)
.+.+|+|+ .+++ +++.++|||||.||++|++++|+|+|++|.. .||+.||+ .+++.|+|+.
T Consensus 345 ~v~~W~PQ-~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~----~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~~~ 419 (481)
T PLN02554 345 KVIGWAPQ-VAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY----AEQKFNAFEMVEELGLAVEIRKYWRGDLLA 419 (481)
T ss_pred eEEeeCCH-HHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc----ccchhhHHHHHHHhCceEEeeccccccccc
Confidence 78899997 5899 7888899999999999999999999999986 58999995 4778898853
Q ss_pred -----eChhhHHHHHHccC
Q 042754 137 -----AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 -----~~~~~L~~~i~~l~ 150 (178)
.+.+++.++|++++
T Consensus 420 ~~~~~~~~e~l~~av~~vm 438 (481)
T PLN02554 420 GEMETVTAEEIERGIRCLM 438 (481)
T ss_pred cccCeEcHHHHHHHHHHHh
Confidence 36788999998886
No 26
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.61 E-value=3.9e-15 Score=128.02 Aligned_cols=130 Identities=10% Similarity=0.136 Sum_probs=94.9
Q ss_pred CCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-------ccccccccCCcceEEEEeChhh
Q 042754 9 SLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-------VPTKSLGEDGLMAVDYFTFSSS 78 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-------~~~~~~~~~~~~nv~v~~~~~~ 78 (178)
+++++|+|++||.. .+.+.+. ...|...+. +|+++.+.... .+........+.|+.+.+|+|+
T Consensus 283 ~~~svvyvsfGS~~~~~~~~~~~~------~~~l~~~~~-~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ 355 (482)
T PLN03007 283 KPDSVIYLSFGSVASFKNEQLFEI------AAGLEGSGQ-NFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQ 355 (482)
T ss_pred CCCceEEEeecCCcCCCHHHHHHH------HHHHHHCCC-CEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCH
Confidence 45779999999972 2233332 345666775 89999886321 0110000012458888999998
Q ss_pred HHHHhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHH---hCCCEEE-----------eChhhH
Q 042754 79 IADHLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELA---ARKHLYC-----------AHPQSL 142 (178)
Q Consensus 79 ~~~~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~---~~G~~~~-----------~~~~~L 142 (178)
.++++++++ +|||||.||++|++++|+|+|++|.. .||..||++++ +.|+++. .+.++|
T Consensus 356 -~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l 430 (482)
T PLN03007 356 -VLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVG----AEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKV 430 (482)
T ss_pred -HHHhccCccceeeecCcchHHHHHHHcCCCeeeccch----hhhhhhHHHHHHhhcceeEeccccccccccCcccHHHH
Confidence 689999875 99999999999999999999999986 58999999886 4566641 377889
Q ss_pred HHHHHccC
Q 042754 143 HQVIAGMD 150 (178)
Q Consensus 143 ~~~i~~l~ 150 (178)
.++|++++
T Consensus 431 ~~av~~~m 438 (482)
T PLN03007 431 EKAVREVI 438 (482)
T ss_pred HHHHHHHh
Confidence 99998885
No 27
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.61 E-value=4.7e-15 Score=126.44 Aligned_cols=130 Identities=15% Similarity=0.177 Sum_probs=95.9
Q ss_pred CCCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCC---cc-----cccccccCCcceEEEEeCh
Q 042754 8 VSLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGT---YV-----PTKSLGEDGLMAVDYFTFS 76 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~---~~-----~~~~~~~~~~~nv~v~~~~ 76 (178)
.+.+.+|+|++||.. .+.+.+. ...|...+. .++++..... .. +... ..+.+.|..+.+|+
T Consensus 261 ~~~~sVvyvsfGS~~~~~~~q~~el------a~gLe~s~~-~FlWv~r~~~~~~~~~~~~lp~~f-~er~~~~g~v~~w~ 332 (451)
T PLN02410 261 QKKNSVIFVSLGSLALMEINEVMET------ASGLDSSNQ-QFLWVIRPGSVRGSEWIESLPKEF-SKIISGRGYIVKWA 332 (451)
T ss_pred CCCCcEEEEEccccccCCHHHHHHH------HHHHHhcCC-CeEEEEccCcccccchhhcCChhH-HHhccCCeEEEccC
Confidence 345679999999973 2333332 345666675 8888887421 00 1110 01234677888999
Q ss_pred hhHHHHhhh--ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEE----eChhhHHHHHHcc
Q 042754 77 SSIADHLRS--ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR-KHLYC----AHPQSLHQVIAGM 149 (178)
Q Consensus 77 ~~~~~~~~~--adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~-G~~~~----~~~~~L~~~i~~l 149 (178)
|+ .++|++ +.++|||||.||++|++++|+|+|++|.. .||+.||+++++. |+|+. .+.+++.++|+++
T Consensus 333 PQ-~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~~v~~av~~l 407 (451)
T PLN02410 333 PQ-KEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFS----SDQKVNARYLECVWKIGIQVEGDLDRGAVERAVKRL 407 (451)
T ss_pred CH-HHHhCCCccCeeeecCchhHHHHHHHcCCCEEecccc----ccCHHHHHHHHHHhCeeEEeCCcccHHHHHHHHHHH
Confidence 98 689988 45599999999999999999999999986 4799999999876 88864 4888999999888
Q ss_pred C
Q 042754 150 D 150 (178)
Q Consensus 150 ~ 150 (178)
+
T Consensus 408 m 408 (451)
T PLN02410 408 M 408 (451)
T ss_pred H
Confidence 5
No 28
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.61 E-value=6.3e-15 Score=126.41 Aligned_cols=131 Identities=17% Similarity=0.185 Sum_probs=94.0
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc-------cccccccCCcceEEEEeChhhH
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-------PTKSLGEDGLMAVDYFTFSSSI 79 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~-------~~~~~~~~~~~nv~v~~~~~~~ 79 (178)
+++++|+|++||... ....+.+ ...|...+. .++++++..... +..........++.+.+|+|+
T Consensus 281 ~~~svVyvsfGS~~~~~~~~~~el-----a~gL~~~~~-~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ- 353 (477)
T PLN02863 281 EDHKVVYVCFGSQVVLTKEQMEAL-----ASGLEKSGV-HFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQ- 353 (477)
T ss_pred CCCceEEEEeeceecCCHHHHHHH-----HHHHHhCCC-cEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCH-
Confidence 456899999999732 2223333 456777786 999999853211 000000001236788899997
Q ss_pred HHHhhh--ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe--------ChhhHHHHHHc
Q 042754 80 ADHLRS--ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYCA--------HPQSLHQVIAG 148 (178)
Q Consensus 80 ~~~~~~--adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~~--------~~~~L~~~i~~ 148 (178)
.+++++ ++++|||||.||++|++++|+|+|++|.. .||..||+++.+ .|+|+.. +.+++.+++.+
T Consensus 354 ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~ 429 (477)
T PLN02863 354 VAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMA----ADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFME 429 (477)
T ss_pred HHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCcc----ccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHH
Confidence 588876 88999999999999999999999999986 489999999765 6888643 56778888876
Q ss_pred cC
Q 042754 149 MD 150 (178)
Q Consensus 149 l~ 150 (178)
+.
T Consensus 430 ~m 431 (477)
T PLN02863 430 SV 431 (477)
T ss_pred Hh
Confidence 53
No 29
>PLN02670 transferase, transferring glycosyl groups
Probab=99.60 E-value=1.4e-14 Score=123.91 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=93.1
Q ss_pred CCCcEEEEEeCCcc-H-HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc---cc-----ccCCcceEEEEeChhh
Q 042754 9 SLKRIVFVTVGTTC-F-DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK---SL-----GEDGLMAVDYFTFSSS 78 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~-~-~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~---~~-----~~~~~~nv~v~~~~~~ 78 (178)
+++.+|+|++||.. . ..-.+.+ ...|...+. .|+++.......... .. .......+.+.+|+|+
T Consensus 276 ~~~sVvyvsfGS~~~l~~~q~~el-----a~gl~~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ 349 (472)
T PLN02670 276 RVNSVVYVALGTEASLRREEVTEL-----ALGLEKSET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQ 349 (472)
T ss_pred CCCceEEEEecccccCCHHHHHHH-----HHHHHHCCC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCH
Confidence 44689999999973 1 1222222 446666675 888887642110000 00 0000112677799998
Q ss_pred HHHHhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---------ChhhHHHHHH
Q 042754 79 IADHLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---------HPQSLHQVIA 147 (178)
Q Consensus 79 ~~~~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---------~~~~L~~~i~ 147 (178)
.+++++.++ +|||||.||++|++++|+|+|.+|.. .||..||+++++.|+|+.+ +.+++.++|+
T Consensus 350 -~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~ 424 (472)
T PLN02670 350 -VKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVL----NEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVR 424 (472)
T ss_pred -HHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcch----hccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHH
Confidence 589977665 99999999999999999999999976 5899999999999999643 5788999999
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
+++
T Consensus 425 ~vm 427 (472)
T PLN02670 425 LAM 427 (472)
T ss_pred HHh
Confidence 886
No 30
>PLN03004 UDP-glycosyltransferase
Probab=99.59 E-value=1.3e-14 Score=123.57 Aligned_cols=132 Identities=15% Similarity=0.170 Sum_probs=96.7
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-----------ccccccccCCcceEEEEeC
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-----------VPTKSLGEDGLMAVDYFTF 75 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-----------~~~~~~~~~~~~nv~v~~~ 75 (178)
+++.+|+|++||... ....+.+ ...|...+. .|+++...... .+..........|+.+.+|
T Consensus 268 ~~~sVvyvsfGS~~~~~~~q~~el-----a~gL~~s~~-~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W 341 (451)
T PLN03004 268 PEKSVVFLCFGSLGLFSKEQVIEI-----AVGLEKSGQ-RFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSW 341 (451)
T ss_pred CCCceEEEEecccccCCHHHHHHH-----HHHHHHCCC-CEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEee
Confidence 456799999999732 2222232 345666675 89998874210 0100000011257888999
Q ss_pred hhhHHHHhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe--------ChhhHHH
Q 042754 76 SSSIADHLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYCA--------HPQSLHQ 144 (178)
Q Consensus 76 ~~~~~~~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~~--------~~~~L~~ 144 (178)
+|+ .++++++++ +|||||.||++|++++|||+|.+|.. .||..||+++++ .|+|+.+ +.+++.+
T Consensus 342 ~PQ-~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~----~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l~~ 416 (451)
T PLN03004 342 APQ-VPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLY----AEQRFNRVMIVDEIKIAISMNESETGFVSSTEVEK 416 (451)
T ss_pred CCH-HHHhCCCccceEeccCcchHHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCceEEecCCcCCccCHHHHHH
Confidence 998 589999998 99999999999999999999999986 489999999986 5988632 6788999
Q ss_pred HHHccCc
Q 042754 145 VIAGMDL 151 (178)
Q Consensus 145 ~i~~l~~ 151 (178)
+|++++.
T Consensus 417 av~~vm~ 423 (451)
T PLN03004 417 RVQEIIG 423 (451)
T ss_pred HHHHHhc
Confidence 9999863
No 31
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.58 E-value=1.6e-14 Score=122.90 Aligned_cols=129 Identities=14% Similarity=0.182 Sum_probs=90.4
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCC--CcccccccccCCcceEEEEeChhhHHHHhh
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRG--TYVPTKSLGEDGLMAVDYFTFSSSIADHLR 84 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~--~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~ 84 (178)
+++.+|+|++||... .+..+.+ ...|. +. .++++.-.. ...+........+.|+.+.+|.|+ .++++
T Consensus 262 ~~~svvyvsfGS~~~~~~~~~~el-----a~gLs--~~-~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ-~~iL~ 332 (449)
T PLN02173 262 PQGSVVYIAFGSMAKLSSEQMEEI-----ASAIS--NF-SYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQ-LQVLS 332 (449)
T ss_pred CCCceEEEEecccccCCHHHHHHH-----HHHhc--CC-CEEEEEeccchhcccchHHHhhcCCceEEeCCCCH-HHHhC
Confidence 345699999999732 2222222 33453 33 566665421 111111100011357888999998 58998
Q ss_pred hcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEEe---------ChhhHHHHHHccC
Q 042754 85 SAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR-KHLYCA---------HPQSLHQVIAGMD 150 (178)
Q Consensus 85 ~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~-G~~~~~---------~~~~L~~~i~~l~ 150 (178)
+++ ++|||||.||++|++++|+|+|++|.. .||..||+++++. |+|+.+ +.+++.+++++++
T Consensus 333 H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm 406 (449)
T PLN02173 333 NKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQW----TDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVM 406 (449)
T ss_pred CCccceEEecCccchHHHHHHcCCCEEecCch----hcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHh
Confidence 877 999999999999999999999999986 5899999999975 777532 6788999999885
No 32
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.58 E-value=1.3e-14 Score=124.54 Aligned_cols=131 Identities=16% Similarity=0.161 Sum_probs=92.0
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc---cccccc----cCCcceEEEEeChhhH
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV---PTKSLG----EDGLMAVDYFTFSSSI 79 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~---~~~~~~----~~~~~nv~v~~~~~~~ 79 (178)
+.+++|+|++||... ....+.+ ...|...+. +++++.+..... ...... .+...+..+.+|+|+
T Consensus 278 ~~~svvyvsfGS~~~~~~~~~~el-----a~~l~~~~~-~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ- 350 (475)
T PLN02167 278 PESSVVFLCFGSLGSLPAPQIKEI-----AQALELVGC-RFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQ- 350 (475)
T ss_pred CCCceEEEeecccccCCHHHHHHH-----HHHHHhCCC-cEEEEEecCcccccchhhhCChHHHHHhccCeeeeccCCH-
Confidence 446799999999732 1222222 456666775 999988753110 000000 001122467799997
Q ss_pred HHHhhh--ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHH-HHhCCCEEE------------eChhhHHH
Q 042754 80 ADHLRS--ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEE-LAARKHLYC------------AHPQSLHQ 144 (178)
Q Consensus 80 ~~~~~~--adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~-l~~~G~~~~------------~~~~~L~~ 144 (178)
.+++++ ++++|||||.||++|++++|+|+|++|.. .||..||++ +++.|+|+. .+.+++.+
T Consensus 351 ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~----~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~~ 426 (475)
T PLN02167 351 VEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMY----AEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAG 426 (475)
T ss_pred HHHhcCcccCeEEeeCCcccHHHHHHcCCCEEecccc----ccchhhHHHHHHHhCeeEEeecccccccCCcccHHHHHH
Confidence 689977 66899999999999999999999999986 489999986 677898863 26678888
Q ss_pred HHHccC
Q 042754 145 VIAGMD 150 (178)
Q Consensus 145 ~i~~l~ 150 (178)
+|++++
T Consensus 427 av~~~m 432 (475)
T PLN02167 427 AVRSLM 432 (475)
T ss_pred HHHHHh
Confidence 888875
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.57 E-value=3.7e-14 Score=116.08 Aligned_cols=155 Identities=23% Similarity=0.220 Sum_probs=102.6
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCc-ceEEEEeChhhHHHHhhhcc
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGL-MAVDYFTFSSSIADHLRSAS 87 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~-~nv~v~~~~~~~~~~~~~ad 87 (178)
++.++|++++|+.+.+.+.+.+ ..++..+.+.+. ++++++|.+............+ .++..+.+. ++.++|+.||
T Consensus 177 ~~~~~i~~~gg~~~~~~~~~~l--~~a~~~l~~~~~-~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~~-~~~~~l~~ad 252 (348)
T TIGR01133 177 EGKPTILVLGGSQGAKILNELV--PKALAKLAEKGI-QIVHQTGKNDLEKVKNVYQELGIEAIVTFIDE-NMAAAYAAAD 252 (348)
T ss_pred CCCeEEEEECCchhHHHHHHHH--HHHHHHHhhcCc-EEEEECCcchHHHHHHHHhhCCceEEecCccc-CHHHHHHhCC
Confidence 3556777777787765555544 233445544454 7777788764321111011111 122222222 7999999999
Q ss_pred EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-----ChhhHHHHHHccCc---------cc
Q 042754 88 LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-----HPQSLHQVIAGMDL---------ES 153 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-----~~~~L~~~i~~l~~---------~~ 153 (178)
++|+++|.+|++|++++|+|+|++|.+... ++|..|++.+.+.+.|+.. +++.|.++++++.. .+
T Consensus 253 ~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~-~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 331 (348)
T TIGR01133 253 LVISRAGASTVAELAAAGVPAILIPYPYAA-DDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEA 331 (348)
T ss_pred EEEECCChhHHHHHHHcCCCEEEeeCCCCc-cchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 999999989999999999999999876543 4689999999999888753 38899999988752 23
Q ss_pred CCCCCCCChh-HHHHH
Q 042754 154 LLPYQPGDAT-PVAKL 168 (178)
Q Consensus 154 ~~~~~~~~~~-~i~~~ 168 (178)
.+.+..+++. ++++.
T Consensus 332 ~~~~~~~~~~~~i~~~ 347 (348)
T TIGR01133 332 ARKLAKPDAAKRIAEL 347 (348)
T ss_pred HHhcCCccHHHHHHhh
Confidence 3455555555 66654
No 34
>PLN02555 limonoid glucosyltransferase
Probab=99.56 E-value=5.3e-14 Score=120.72 Aligned_cols=129 Identities=16% Similarity=0.199 Sum_probs=93.7
Q ss_pred CCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc--------ccccccccCCcceEEEEeChhhH
Q 042754 10 LKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY--------VPTKSLGEDGLMAVDYFTFSSSI 79 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~--------~~~~~~~~~~~~nv~v~~~~~~~ 79 (178)
.+.+|+|++||... ....+.+ ...|...+. +++++...... .+... ..+.+.|..+.+|+|+
T Consensus 276 ~~sVvyvsfGS~~~~~~~q~~el-----a~~l~~~~~-~flW~~~~~~~~~~~~~~~lp~~~-~~~~~~~g~v~~W~PQ- 347 (480)
T PLN02555 276 PSSVVYISFGTVVYLKQEQIDEI-----AYGVLNSGV-SFLWVMRPPHKDSGVEPHVLPEEF-LEKAGDKGKIVQWCPQ- 347 (480)
T ss_pred CCceeEEEeccccCCCHHHHHHH-----HHHHHhcCC-eEEEEEecCcccccchhhcCChhh-hhhcCCceEEEecCCH-
Confidence 34589999999631 2222222 345556675 88888763210 11110 0122357888899997
Q ss_pred HHHh--hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC-CCEEEe----------ChhhHHHHH
Q 042754 80 ADHL--RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR-KHLYCA----------HPQSLHQVI 146 (178)
Q Consensus 80 ~~~~--~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~-G~~~~~----------~~~~L~~~i 146 (178)
.+++ +++.++|||||.||++|++++|+|+|.+|.. .||..||+++++. |+|+.+ +.+++.++|
T Consensus 348 ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v 423 (480)
T PLN02555 348 EKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQW----GDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECL 423 (480)
T ss_pred HHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCc----cccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHH
Confidence 6888 7799999999999999999999999999986 4899999999987 988643 567888888
Q ss_pred HccC
Q 042754 147 AGMD 150 (178)
Q Consensus 147 ~~l~ 150 (178)
+++.
T Consensus 424 ~~vm 427 (480)
T PLN02555 424 LEAT 427 (480)
T ss_pred HHHh
Confidence 8875
No 35
>PLN02764 glycosyltransferase family protein
Probab=99.56 E-value=6.8e-14 Score=119.10 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=90.5
Q ss_pred CCCCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC--Cc-----ccccccccCCcceEEEEeCh
Q 042754 7 SVSLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRG--TY-----VPTKSLGEDGLMAVDYFTFS 76 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~--~~-----~~~~~~~~~~~~nv~v~~~~ 76 (178)
..+++.+|+|++||.. .+.+.+.. ..|...+. .++++.... .. .+...........+.+.+|+
T Consensus 253 ~q~~~sVvyvsfGS~~~~~~~q~~ela------~gL~~s~~-pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~ 325 (453)
T PLN02764 253 GYEPDSVVFCALGSQVILEKDQFQELC------LGMELTGS-PFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWV 325 (453)
T ss_pred CCCCCceEEEeecccccCCHHHHHHHH------HHHHhCCC-CeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCC
Confidence 4456789999999973 33444443 23333343 444444421 10 11110000012346777999
Q ss_pred hhHHHHhhh--ccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE--------eChhhHHHH
Q 042754 77 SSIADHLRS--ASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC--------AHPQSLHQV 145 (178)
Q Consensus 77 ~~~~~~~~~--adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~--------~~~~~L~~~ 145 (178)
|+ .+++++ +.++|||||.||++|++++|+|+|++|.. .||..||+++++ .|+++. .+.+++.++
T Consensus 326 PQ-~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~a 400 (453)
T PLN02764 326 QQ-PLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQL----GDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDA 400 (453)
T ss_pred CH-HHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcc----cchHHHHHHHHHHhceEEEeccccCCccCHHHHHHH
Confidence 98 589977 56699999999999999999999999986 589999999964 788864 377889999
Q ss_pred HHccC
Q 042754 146 IAGMD 150 (178)
Q Consensus 146 i~~l~ 150 (178)
+++++
T Consensus 401 v~~vm 405 (453)
T PLN02764 401 INSVM 405 (453)
T ss_pred HHHHh
Confidence 98886
No 36
>PLN00164 glucosyltransferase; Provisional
Probab=99.56 E-value=3.3e-14 Score=122.19 Aligned_cols=130 Identities=22% Similarity=0.256 Sum_probs=91.0
Q ss_pred CCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-------c-cccc-c--c---cCCcceEEEE
Q 042754 10 LKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-------V-PTKS-L--G---EDGLMAVDYF 73 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-------~-~~~~-~--~---~~~~~nv~v~ 73 (178)
.+.+|+|++||... ..-.+.+ ...|...+. +++++...... . .... . . ......+.+.
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~el-----a~gL~~s~~-~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~ 344 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREI-----AAGLERSGH-RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWP 344 (480)
T ss_pred CCceEEEEecccccCCHHHHHHH-----HHHHHHcCC-CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEe
Confidence 45789999999632 1112222 456666675 88877763210 0 0000 0 0 0011236677
Q ss_pred eChhhHHHHhhhcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe----------Chh
Q 042754 74 TFSSSIADHLRSAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYCA----------HPQ 140 (178)
Q Consensus 74 ~~~~~~~~~~~~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~~----------~~~ 140 (178)
+|.|+ .+++++++ ++|||||.||++|++++|+|+|++|.. .||..||+++.+ .|+|+.+ +.+
T Consensus 345 ~w~PQ-~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~----~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e 419 (480)
T PLN00164 345 TWAPQ-KEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLY----AEQHLNAFELVADMGVAVAMKVDRKRDNFVEAA 419 (480)
T ss_pred ecCCH-HHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcc----ccchhHHHHHHHHhCeEEEeccccccCCcCcHH
Confidence 99998 68999887 799999999999999999999999986 589999998854 7988642 568
Q ss_pred hHHHHHHccC
Q 042754 141 SLHQVIAGMD 150 (178)
Q Consensus 141 ~L~~~i~~l~ 150 (178)
++.++|++++
T Consensus 420 ~l~~av~~vm 429 (480)
T PLN00164 420 ELERAVRSLM 429 (480)
T ss_pred HHHHHHHHHh
Confidence 8999998875
No 37
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.55 E-value=5.1e-14 Score=120.08 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=93.6
Q ss_pred CCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-------ccc-c---ccc--cCCcceEEE
Q 042754 9 SLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-------VPT-K---SLG--EDGLMAVDY 72 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-------~~~-~---~~~--~~~~~nv~v 72 (178)
+.+.+|+|++||.. .+.+. .+ ...|...+. .|+++...... ... . ... .+.+.|..+
T Consensus 259 ~~~sVvyvsfGS~~~l~~~q~~-el-----a~gL~~s~~-~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v 331 (455)
T PLN02152 259 TESSVIYVSFGTMVELSKKQIE-EL-----ARALIEGKR-PFLWVITDKLNREAKIEGEEETEIEKIAGFRHELEEVGMI 331 (455)
T ss_pred CCCceEEEEecccccCCHHHHH-HH-----HHHHHHcCC-CeEEEEecCcccccccccccccccccchhHHHhccCCeEE
Confidence 44689999999973 22222 22 345556675 88888864210 000 0 000 113456788
Q ss_pred EeChhhHHHHhhhcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh---CCCEEE------eChhh
Q 042754 73 FTFSSSIADHLRSAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA---RKHLYC------AHPQS 141 (178)
Q Consensus 73 ~~~~~~~~~~~~~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~---~G~~~~------~~~~~ 141 (178)
.+|+|++ +++++++ ++|||||.||++|++++|+|+|++|.. .||..||+++++ .|+++. .+.++
T Consensus 332 ~~W~PQ~-~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~ 406 (455)
T PLN02152 332 VSWCSQI-EVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMW----SDQPANAKLLEEIWKTGVRVRENSEGLVERGE 406 (455)
T ss_pred EeeCCHH-HHhCCcccceEEeeCCcccHHHHHHcCCCEEecccc----ccchHHHHHHHHHhCceEEeecCcCCcCcHHH
Confidence 8999984 8998888 699999999999999999999999986 589999999998 455542 37788
Q ss_pred HHHHHHccC
Q 042754 142 LHQVIAGMD 150 (178)
Q Consensus 142 L~~~i~~l~ 150 (178)
+.++|++++
T Consensus 407 l~~av~~vm 415 (455)
T PLN02152 407 IRRCLEAVM 415 (455)
T ss_pred HHHHHHHHH
Confidence 999999886
No 38
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.55 E-value=4.2e-14 Score=121.25 Aligned_cols=131 Identities=11% Similarity=0.115 Sum_probs=93.2
Q ss_pred CCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCC-----------------c-----cccccccc
Q 042754 9 SLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGT-----------------Y-----VPTKSLGE 64 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~-----------------~-----~~~~~~~~ 64 (178)
+.+.+|+|++||... ..-.+.+ ...|...+. .|+++..+.. . .+......
T Consensus 261 ~~~sVvyvsfGS~~~l~~~q~~el-----a~gL~~s~~-~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR 334 (481)
T PLN02992 261 PNESVLYISFGSGGSLSAKQLTEL-----AWGLEMSQQ-RFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSR 334 (481)
T ss_pred CCCceEEEeecccccCCHHHHHHH-----HHHHHHcCC-CEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHH
Confidence 346799999999732 2222222 345666675 8888884210 0 00000000
Q ss_pred CCcceEEEEeChhhHHHHhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHH-hCCCEEE-----
Q 042754 65 DGLMAVDYFTFSSSIADHLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELA-ARKHLYC----- 136 (178)
Q Consensus 65 ~~~~nv~v~~~~~~~~~~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~-~~G~~~~----- 136 (178)
....++.+.+|+|+ .++++++.+ +|||||.||++|++++|+|+|.+|.. .||..||++++ +.|+++.
T Consensus 335 ~~~rg~vv~~W~PQ-~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~ 409 (481)
T PLN02992 335 THDRGFVVPSWAPQ-AEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF----AEQNMNAALLSDELGIAVRSDDPK 409 (481)
T ss_pred hcCCCEEEeecCCH-HHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc----chhHHHHHHHHHHhCeeEEecCCC
Confidence 01235888899998 589988885 99999999999999999999999986 58999999995 8899864
Q ss_pred --eChhhHHHHHHccC
Q 042754 137 --AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 --~~~~~L~~~i~~l~ 150 (178)
.+.+++.++|++++
T Consensus 410 ~~~~~~~l~~av~~vm 425 (481)
T PLN02992 410 EVISRSKIEALVRKVM 425 (481)
T ss_pred CcccHHHHHHHHHHHh
Confidence 36678889888875
No 39
>PLN02208 glycosyltransferase family protein
Probab=99.55 E-value=6.5e-14 Score=119.17 Aligned_cols=132 Identities=18% Similarity=0.205 Sum_probs=90.9
Q ss_pred CCCCcEEEEEeCCcc---HHHHHHHhccHHHHH-HHHhCCCCeEEEEEeCCC--c---ccccccccCCcceEEEEeChhh
Q 042754 8 VSLKRIVFVTVGTTC---FDALVKAVDTLEVKQ-ELTRRGYTHLLIQMGRGT--Y---VPTKSLGEDGLMAVDYFTFSSS 78 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~-~l~~~~~~~vvv~~G~~~--~---~~~~~~~~~~~~nv~v~~~~~~ 78 (178)
.+++.+|+|++||.. .+.+.+.. .. ++...++ .+++..+... . .+..........|+.+.+|.|+
T Consensus 248 ~~~~sVvyvSfGS~~~l~~~q~~e~~-----~~l~~s~~pf-~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ 321 (442)
T PLN02208 248 FPPKSVVFCSLGSQIILEKDQFQELC-----LGMELTGLPF-LIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQ 321 (442)
T ss_pred CCCCcEEEEeccccccCCHHHHHHHH-----HHHHhCCCcE-EEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCH
Confidence 345689999999973 33354444 22 2344444 5555543111 0 1100000001247888899998
Q ss_pred HHHHhhhcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE--------eChhhHHHHHH
Q 042754 79 IADHLRSAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC--------AHPQSLHQVIA 147 (178)
Q Consensus 79 ~~~~~~~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~--------~~~~~L~~~i~ 147 (178)
.+++++.+ ++|||||.||++|++++|+|+|.+|.. .||..||+++.+ .|+|+. .+.+++.++|+
T Consensus 322 -~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~----~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~ai~ 396 (442)
T PLN02208 322 -PLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFL----SDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNAIK 396 (442)
T ss_pred -HHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcc----hhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHHHH
Confidence 58887776 699999999999999999999999986 589999998776 788863 36788999998
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
++.
T Consensus 397 ~~m 399 (442)
T PLN02208 397 SVM 399 (442)
T ss_pred HHh
Confidence 875
No 40
>PLN00414 glycosyltransferase family protein
Probab=99.54 E-value=1.1e-13 Score=117.88 Aligned_cols=132 Identities=16% Similarity=0.167 Sum_probs=90.1
Q ss_pred CCCCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeC----CC---cccccccccCCcceEEEEeCh
Q 042754 7 SVSLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGR----GT---YVPTKSLGEDGLMAVDYFTFS 76 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~----~~---~~~~~~~~~~~~~nv~v~~~~ 76 (178)
..+++.+|+|++||.. .+.+.+.. ..|...+. .++++.-. .. ..+......-......+.+|+
T Consensus 248 ~q~~~sVvyvsfGS~~~~~~~q~~e~a------~gL~~s~~-~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~ 320 (446)
T PLN00414 248 GFEPGSVVFCAFGTQFFFEKDQFQEFC------LGMELTGL-PFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWV 320 (446)
T ss_pred cCCCCceEEEeecccccCCHHHHHHHH------HHHHHcCC-CeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccC
Confidence 3456789999999973 23454443 23334453 55444432 11 011110000011245556999
Q ss_pred hhHHHHhhhc--cEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHH-hCCCEEE--------eChhhHHHH
Q 042754 77 SSIADHLRSA--SLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELA-ARKHLYC--------AHPQSLHQV 145 (178)
Q Consensus 77 ~~~~~~~~~a--dlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~-~~G~~~~--------~~~~~L~~~ 145 (178)
|+ .++++++ +++|||||.||++|++++|+|+|++|.. .||..||++++ +.|+++. .+.+++.++
T Consensus 321 PQ-~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~----~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~ 395 (446)
T PLN00414 321 EQ-PLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQL----ADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDT 395 (446)
T ss_pred CH-HHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcc----cchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHH
Confidence 98 5899777 6799999999999999999999999986 58999999996 5798863 377889999
Q ss_pred HHccC
Q 042754 146 IAGMD 150 (178)
Q Consensus 146 i~~l~ 150 (178)
+++++
T Consensus 396 v~~~m 400 (446)
T PLN00414 396 VKSVM 400 (446)
T ss_pred HHHHh
Confidence 98886
No 41
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.47 E-value=7.8e-14 Score=116.87 Aligned_cols=142 Identities=12% Similarity=0.071 Sum_probs=94.8
Q ss_pred CCCCcEEEEEeCCccHH--HHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCcccc-cccccCCcceEEEEeChhhHHHH
Q 042754 8 VSLKRIVFVTVGTTCFD--ALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPT-KSLGEDGLMAVDYFTFSSSIADH 82 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~--~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~-~~~~~~~~~nv~v~~~~~~~~~~ 82 (178)
++++++|++.+||.+.+ .++..+ .++++.+.+. +. ++++..+....... .........+..+..+..++..+
T Consensus 188 ~~~~~~Ilvl~GSR~aei~k~~~~l--l~a~~~l~~~~p~~-~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 264 (385)
T TIGR00215 188 DHNGETLALLPGSRGSEVEKLFPLF--LKAAQLLEQQEPDL-RRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDGDARKA 264 (385)
T ss_pred CCCCCEEEEECCCCHHHHHHhHHHH--HHHHHHHHHhCCCe-EEEEEeCCchhHHHHHHHHHHhCCCCcEEEECchHHHH
Confidence 34678899999998765 344444 2233444332 33 55554433221111 00000011122333444578899
Q ss_pred hhhccEEEecCChHHHHHHHHcCCCEEEE----eCCCCCCch-----HHHHHHHHHhCCCEEE-----eChhhHHHHHHc
Q 042754 83 LRSASLVISHAGSGSIFETLRHGKPLIVV----VNEDLMDNH-----QSELAEELAARKHLYC-----AHPQSLHQVIAG 148 (178)
Q Consensus 83 ~~~adlvIshaG~~Ti~E~l~~g~P~ivi----P~~~~~~~~-----Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~ 148 (178)
|+.||++|+++|+.|+ |++++|+|+|++ |+++.+..| |..|+..+.+.+++.. .+++.|.+.+.+
T Consensus 265 l~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ 343 (385)
T TIGR00215 265 MFAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLL 343 (385)
T ss_pred HHhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHH
Confidence 9999999999999888 999999999999 887766667 8889999999998852 489999999998
Q ss_pred cCccc
Q 042754 149 MDLES 153 (178)
Q Consensus 149 l~~~~ 153 (178)
++.+.
T Consensus 344 ll~~~ 348 (385)
T TIGR00215 344 LLENG 348 (385)
T ss_pred HhcCC
Confidence 87554
No 42
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=9.9e-13 Score=103.87 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=93.1
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc-cccCCcceEEEEeChhhHHHHhhhccE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS-LGEDGLMAVDYFTFSSSIADHLRSASL 88 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~-~~~~~~~nv~v~~~~~~~~~~~~~adl 88 (178)
++..|||++|+...+.+.-.+ +..|...++ .+-+++|..++..... ......+|+..+-+.+||.++|..||+
T Consensus 157 ~~r~ilI~lGGsDpk~lt~kv-----l~~L~~~~~-nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke~d~ 230 (318)
T COG3980 157 PKRDILITLGGSDPKNLTLKV-----LAELEQKNV-NLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELMKEADL 230 (318)
T ss_pred chheEEEEccCCChhhhHHHH-----HHHhhccCe-eEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHHHhcch
Confidence 456799999866444443333 234444455 7888899665533221 111234688889999999999999999
Q ss_pred EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe----ChhhHHHHHHcc
Q 042754 89 VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA----HPQSLHQVIAGM 149 (178)
Q Consensus 89 vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~----~~~~L~~~i~~l 149 (178)
+|+.|| .|++|++..|+|++++|.. .+|...|+.++.+|+.... +...+...+.++
T Consensus 231 aI~AaG-stlyEa~~lgvP~l~l~~a----~NQ~~~a~~f~~lg~~~~l~~~l~~~~~~~~~~~i 290 (318)
T COG3980 231 AISAAG-STLYEALLLGVPSLVLPLA----ENQIATAKEFEALGIIKQLGYHLKDLAKDYEILQI 290 (318)
T ss_pred heeccc-hHHHHHHHhcCCceEEeee----ccHHHHHHHHHhcCchhhccCCCchHHHHHHHHHh
Confidence 999777 7999999999999999986 3699999999999987643 444444445444
No 43
>PLN03015 UDP-glucosyl transferase
Probab=99.42 E-value=2.9e-12 Score=109.55 Aligned_cols=131 Identities=15% Similarity=0.106 Sum_probs=90.4
Q ss_pred CCCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-------ccccccccCCcce---------
Q 042754 8 VSLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-------VPTKSLGEDGLMA--------- 69 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-------~~~~~~~~~~~~n--------- 69 (178)
.+.+.+|+|++||... ..-.+.+ ...|...+. .|+++...... +..... ...+.|
T Consensus 264 ~~~~sVvyvsFGS~~~~~~~q~~el-----a~gl~~s~~-~FlWv~r~~~~~~~~~~~~~~~~~-~~lp~~f~er~~~rG 336 (470)
T PLN03015 264 QGERSVVYVCLGSGGTLTFEQTVEL-----AWGLELSGQ-RFVWVLRRPASYLGASSSDDDQVS-ASLPEGFLDRTRGVG 336 (470)
T ss_pred CCCCCEEEEECCcCCcCCHHHHHHH-----HHHHHhCCC-cEEEEEecCccccccccccccchh-hcCChHHHHhhccCc
Confidence 3456899999999732 2222222 345666675 88888752100 000000 001222
Q ss_pred EEEEeChhhHHHHhhhcc--EEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHH-HhCCCEEEe---------
Q 042754 70 VDYFTFSSSIADHLRSAS--LVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEEL-AARKHLYCA--------- 137 (178)
Q Consensus 70 v~v~~~~~~~~~~~~~ad--lvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l-~~~G~~~~~--------- 137 (178)
+.+.+|+|+ .+++++.. .+|||||.||++|++++|+|+|.+|.. .||..||+++ +..|+|+..
T Consensus 337 l~v~~W~PQ-~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~----~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 337 LVVTQWAPQ-VEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLY----AEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred eEEEecCCH-HHHhccCccCeEEecCCchhHHHHHHcCCCEEecccc----cchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 567799998 48887755 599999999999999999999999986 5899999999 567888632
Q ss_pred ChhhHHHHHHccC
Q 042754 138 HPQSLHQVIAGMD 150 (178)
Q Consensus 138 ~~~~L~~~i~~l~ 150 (178)
+.+++.++|+++.
T Consensus 412 ~~e~i~~~v~~lm 424 (470)
T PLN03015 412 GREEVASLVRKIV 424 (470)
T ss_pred CHHHHHHHHHHHH
Confidence 5677888888875
No 44
>PLN02534 UDP-glycosyltransferase
Probab=99.41 E-value=2.8e-12 Score=110.38 Aligned_cols=130 Identities=12% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCCcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc--------ccccccccCCcceEEEEeChh
Q 042754 9 SLKRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY--------VPTKSLGEDGLMAVDYFTFSS 77 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~--------~~~~~~~~~~~~nv~v~~~~~ 77 (178)
+.+.+|+|++||.. .+.+.+. ...|...+. .|++++..... .+..........++.+.+|+|
T Consensus 281 ~~~sVvyvsfGS~~~~~~~q~~e~------a~gl~~~~~-~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~p 353 (491)
T PLN02534 281 KPRSVIYACLGSLCRLVPSQLIEL------GLGLEASKK-PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAP 353 (491)
T ss_pred CCCceEEEEecccccCCHHHHHHH------HHHHHhCCC-CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCC
Confidence 44689999999973 2233332 235555664 88898874210 001100000235777889999
Q ss_pred hHHHHhhhccE--EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEE------------------
Q 042754 78 SIADHLRSASL--VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYC------------------ 136 (178)
Q Consensus 78 ~~~~~~~~adl--vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~------------------ 136 (178)
+ .++++++++ +|||||.||++|++++|+|+|++|.. .+|..||+++++ .|+|+.
T Consensus 354 q-~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~----~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~ 428 (491)
T PLN02534 354 Q-VLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLF----AEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVL 428 (491)
T ss_pred H-HHHhcCCccceEEecCccHHHHHHHHcCCCEEecccc----ccHHHHHHHHHHhhcceEEecccccccccccccccCc
Confidence 8 689999888 99999999999999999999999986 489999999984 355441
Q ss_pred eChhhHHHHHHccC
Q 042754 137 AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 ~~~~~L~~~i~~l~ 150 (178)
.+.+++.++|+++.
T Consensus 429 v~~eev~~~v~~~m 442 (491)
T PLN02534 429 VKKDEVEKAVKTLM 442 (491)
T ss_pred cCHHHHHHHHHHHh
Confidence 35677888888875
No 45
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.40 E-value=6.5e-13 Score=110.30 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=97.2
Q ss_pred CCcEEEEEeCCccHH--HHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCc-ccccccccCC-cceEEEEeChhhHHHHh
Q 042754 10 LKRIVFVTVGTTCFD--ALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTY-VPTKSLGEDG-LMAVDYFTFSSSIADHL 83 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~--~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~-~~~~~~~~~~-~~nv~v~~~~~~~~~~~ 83 (178)
++++|++.+||.+.+ .+++.+ .+++..+.+ .+. +++++.|.... .......... ..++.++ .+++..+|
T Consensus 185 ~~~~il~~~gsr~~~~~~~~~~l--~~a~~~l~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~ 259 (380)
T PRK00025 185 DARVLALLPGSRGQEIKRLLPPF--LKAAQLLQQRYPDL-RFVLPLVNPKRREQIEEALAEYAGLEVTLL--DGQKREAM 259 (380)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH--HHHHHHHHHhCCCe-EEEEecCChhhHHHHHHHHhhcCCCCeEEE--cccHHHHH
Confidence 467788888987654 444444 233444433 244 77777763321 1111111111 2234443 35799999
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEE----eCCCCCCchHHHH-----HHHHHhCCCEE-----EeChhhHHHHHHcc
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVV----VNEDLMDNHQSEL-----AEELAARKHLY-----CAHPQSLHQVIAGM 149 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~ivi----P~~~~~~~~Q~~n-----A~~l~~~G~~~-----~~~~~~L~~~i~~l 149 (178)
+.||++|+.+|.+|+ |++++|+|+|++ |+++...+||..| ++.+.+.+.+. ..+++.|.+.+.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 999999999998877 999999999999 4444555666654 45555554332 23788899998887
Q ss_pred Ccc---------cC----CCCCCCChh-HHHHHHHHhc
Q 042754 150 DLE---------SL----LPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 150 ~~~---------~~----~~~~~~~~~-~i~~~i~~~~ 173 (178)
+.+ +. +.. .+++. ++++.|.+.+
T Consensus 339 l~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 339 LADGARRQALLEGFTELHQQL-RCGADERAAQAVLELL 375 (380)
T ss_pred hcCHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHh
Confidence 521 11 222 45666 9999888765
No 46
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.34 E-value=1.3e-11 Score=106.11 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=82.1
Q ss_pred CcEEEEEeCCccH-----HHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCccc--ccccccCCcceEEEEeChhhHHHH
Q 042754 11 KRIVFVTVGTTCF-----DALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVP--TKSLGEDGLMAVDYFTFSSSIADH 82 (178)
Q Consensus 11 ~~~ilVt~Gs~~~-----~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~--~~~~~~~~~~nv~v~~~~~~~~~~ 82 (178)
..+|+|++||... ....+.+ ...+... ++ .+++..-...... .... ...+.||...+|.|+...+
T Consensus 277 ~~vvyvSfGS~~~~~~lp~~~~~~l-----~~~l~~~~~~-~FiW~~~~~~~~~~~~~~~-~~~~~nV~~~~W~PQ~~ll 349 (496)
T KOG1192|consen 277 HSVVYISFGSMVNSADLPEEQKKEL-----AKALESLQGV-TFLWKYRPDDSIYFPEGLP-NRGRGNVVLSKWAPQNDLL 349 (496)
T ss_pred CCeEEEECCcccccccCCHHHHHHH-----HHHHHhCCCc-eEEEEecCCcchhhhhcCC-CCCcCceEEecCCCcHHHh
Confidence 4799999999841 1222233 4455555 54 6788777543211 1110 0013578888999996433
Q ss_pred --hhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 83 --LRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 83 --~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
=++..++|||||.||++|++++|||+|.+|.. +||..||+++++.|.+..
T Consensus 350 l~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf----~DQ~~Na~~i~~~g~~~v 401 (496)
T KOG1192|consen 350 LDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLF----GDQPLNARLLVRHGGGGV 401 (496)
T ss_pred cCCCcCcEEEECCcccHHHHHHhcCCceecCCcc----ccchhHHHHHHhCCCEEE
Confidence 35578999999999999999999999999986 589999999999998864
No 47
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.05 E-value=5.1e-10 Score=92.58 Aligned_cols=108 Identities=14% Similarity=0.145 Sum_probs=71.9
Q ss_pred CcEEEEEeCCccHH--HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccE
Q 042754 11 KRIVFVTVGTTCFD--ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASL 88 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~--~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adl 88 (178)
.++|++..||.+.+ .+...+ .++...+.+. . ..+++++.............. ..+. +++++.++|.+||+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~--~~aa~~L~~~-~-~~~~i~~a~~~~~i~~~~~~~-~~~~---~~~~~~~~m~~aDl 238 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIF--KELAKKLEGK-E-KILVVPSFFKGKDLKEIYGDI-SEFE---ISYDTHKALLEAEF 238 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHH--HHHHHHHhhc-C-cEEEEeCCCcHHHHHHHHhcC-CCcE---EeccHHHHHHhhhH
Confidence 48999999998754 333333 2334455442 3 466667765431111111111 1233 33467899999999
Q ss_pred EEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh
Q 042754 89 VISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA 130 (178)
Q Consensus 89 vIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~ 130 (178)
+|+.+|..|+ |++.+|+|+|+ ++. .+.+|+.||+++.+
T Consensus 239 al~~SGT~TL-E~al~g~P~Vv-~Yk--~~~lty~iak~lv~ 276 (347)
T PRK14089 239 AFICSGTATL-EAALIGTPFVL-AYK--AKAIDYFIAKMFVK 276 (347)
T ss_pred HHhcCcHHHH-HHHHhCCCEEE-EEe--CCHHHHHHHHHHHc
Confidence 9999998888 99999999997 554 46799999999994
No 48
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.99 E-value=5.6e-09 Score=85.97 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=70.2
Q ss_pred ceEEEEeC--hhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChhhHH
Q 042754 68 MAVDYFTF--SSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA--HPQSLH 143 (178)
Q Consensus 68 ~nv~v~~~--~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~--~~~~L~ 143 (178)
.++++.++ ..+|..+|..||++|+.+| +.+.|++++|+|+|++... |. +..+.+.|.++.. +++.+.
T Consensus 258 ~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~------~~--~~~~~~~g~~~~~~~~~~~i~ 328 (363)
T cd03786 258 PNVLLISPLGYLYFLLLLKNADLVLTDSG-GIQEEASFLGVPVLNLRDR------TE--RPETVESGTNVLVGTDPEAIL 328 (363)
T ss_pred CCEEEECCcCHHHHHHHHHcCcEEEEcCc-cHHhhhhhcCCCEEeeCCC------Cc--cchhhheeeEEecCCCHHHHH
Confidence 57777643 4579999999999999999 7788999999999997632 33 4456778877654 478999
Q ss_pred HHHHccCcc-----c--CCCCCCCChh-HHHHHH
Q 042754 144 QVIAGMDLE-----S--LLPYQPGDAT-PVAKLI 169 (178)
Q Consensus 144 ~~i~~l~~~-----~--~~~~~~~~~~-~i~~~i 169 (178)
+++.+++.. . ..+|..++++ +|++.|
T Consensus 329 ~~i~~ll~~~~~~~~~~~~~~~~~~a~~~I~~~l 362 (363)
T cd03786 329 AAIEKLLSDEFAYSLMSINPYGDGNASERIVEIL 362 (363)
T ss_pred HHHHHHhcCchhhhcCCCCCCCCCHHHHHHHHHh
Confidence 999887521 1 3567777888 888876
No 49
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.61 E-value=1.5e-06 Score=72.06 Aligned_cols=146 Identities=13% Similarity=0.196 Sum_probs=89.5
Q ss_pred CCcEEEEEeCCc-----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc-ccccCCcceEEEEeChh--hH
Q 042754 10 LKRIVFVTVGTT-----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK-SLGEDGLMAVDYFTFSS--SI 79 (178)
Q Consensus 10 ~~~~ilVt~Gs~-----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~-~~~~~~~~nv~v~~~~~--~~ 79 (178)
+++.++++++-. +...+.+++ ..+.+ .+. ++++..+++...... ........++++.+..+ ++
T Consensus 196 ~~~~vl~~~hr~~~~~k~~~~ll~a~------~~l~~~~~~~-~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 268 (365)
T TIGR00236 196 DKRYILLTLHRRENVGEPLENIFKAI------REIVEEFEDV-QIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDF 268 (365)
T ss_pred CCCEEEEecCchhhhhhHHHHHHHHH------HHHHHHCCCC-EEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence 346777777532 233444443 33322 244 666665654321111 01111235788876543 46
Q ss_pred HHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChhhHHHHHHccCc------
Q 042754 80 ADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA--HPQSLHQVIAGMDL------ 151 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~--~~~~L~~~i~~l~~------ 151 (178)
..+|+.||++|+.+|. .+.|++++|+|+|.++... +.|. +.+.|.++.. +++++.+++.+++.
T Consensus 269 ~~~l~~ad~vv~~Sg~-~~~EA~a~g~PvI~~~~~~---~~~e-----~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~ 339 (365)
T TIGR00236 269 LNLAANSHLILTDSGG-VQEEAPSLGKPVLVLRDTT---ERPE-----TVEAGTNKLVGTDKENITKAAKRLLTDPDEYK 339 (365)
T ss_pred HHHHHhCCEEEECChh-HHHHHHHcCCCEEECCCCC---CChH-----HHhcCceEEeCCCHHHHHHHHHHHHhChHHHH
Confidence 7889999999998885 4799999999999976532 2232 2335555433 78899999887741
Q ss_pred ---ccCCCCCCCChh-HHHHHHHH
Q 042754 152 ---ESLLPYQPGDAT-PVAKLINR 171 (178)
Q Consensus 152 ---~~~~~~~~~~~~-~i~~~i~~ 171 (178)
....+|.+++++ +|++.|.+
T Consensus 340 ~~~~~~~~~g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 340 KMSNASNPYGDGEASERIVEELLN 363 (365)
T ss_pred HhhhcCCCCcCchHHHHHHHHHHh
Confidence 234567777787 99998875
No 50
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.52 E-value=1.1e-06 Score=71.00 Aligned_cols=120 Identities=18% Similarity=0.244 Sum_probs=77.9
Q ss_pred cEEEEEeCCc----cHHHHHHHhccHHHHHHHHh-CCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh
Q 042754 12 RIVFVTVGTT----CFDALVKAVDTLEVKQELTR-RGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR 84 (178)
Q Consensus 12 ~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~-~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~ 84 (178)
+.++++.|+. +.+.+.+.+ ..+.. .++ -++++|......... ....|+.+.++++ ++..+|+
T Consensus 197 ~~~i~~~G~~~~~k~~~~~i~~~------~~l~~~~~~--~l~i~G~~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~ 265 (364)
T cd03814 197 RPVLLYVGRLAPEKNLEALLDAD------LPLRRRPPV--RLVIVGDGPARARLE---ARYPNVHFLGFLDGEELAAAYA 265 (364)
T ss_pred CeEEEEEeccccccCHHHHHHHH------HHhhhcCCc--eEEEEeCCchHHHHh---ccCCcEEEEeccCHHHHHHHHH
Confidence 5677888865 334444444 33333 233 445566544322111 1346899999754 6899999
Q ss_pred hccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 85 SASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 85 ~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
.||++|+.+. .++++|++++|+|+|.-+... +.+.+++.+.++.. +.+++.++|.++.
T Consensus 266 ~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~--------~~~~i~~~~~g~~~~~~~~~~l~~~i~~l~ 330 (364)
T cd03814 266 SADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGG--------PADIVTDGENGLLVEPGDAEAFAAALAALL 330 (364)
T ss_pred hCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCC--------chhhhcCCcceEEcCCCCHHHHHHHHHHHH
Confidence 9999997764 478999999999999866541 34455665666543 5666888888874
No 51
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.49 E-value=3.1e-06 Score=67.66 Aligned_cols=125 Identities=17% Similarity=0.227 Sum_probs=80.1
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccccc----cccCCcceEEEEeChhhH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKS----LGEDGLMAVDYFTFSSSI 79 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~----~~~~~~~nv~v~~~~~~~ 79 (178)
+.+.++++.|+. +...+.+.+ ..+.. .++ ++ +++|......... .......++.+.++.+++
T Consensus 186 ~~~~~i~~~G~~~~~k~~~~li~~~------~~l~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 257 (359)
T cd03808 186 EDDPVFLFVARLLKDKGIDELLEAA------RILKAKGPNV-RL-LLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDV 257 (359)
T ss_pred CCCcEEEEEeccccccCHHHHHHHH------HHHHhcCCCe-EE-EEEcCCCcchhhHHHHHHhcCCcceEEEeeccccH
Confidence 356678888864 444555554 33332 233 44 4556544321111 011234689999998889
Q ss_pred HHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 80 ADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 80 ~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
.++|+.||++|.-+. .+++.|++++|+|+|+-+... ..+.+.+.+.|+.. +++++.+++.++.
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~--------~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~ 327 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG--------CREAVIDGVNGFLVPPGDAEALADAIERLI 327 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCC--------chhhhhcCcceEEECCCCHHHHHHHHHHHH
Confidence 999999999997653 689999999999999855431 23445545555543 5788999988864
No 52
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.42 E-value=5.2e-06 Score=66.78 Aligned_cols=126 Identities=20% Similarity=0.223 Sum_probs=79.7
Q ss_pred CCCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHH
Q 042754 9 SLKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADH 82 (178)
Q Consensus 9 ~~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~ 82 (178)
++.+.+++..|+. +...+.+.+ ..+...++ ++ +++|................++.+.+|+ +++.++
T Consensus 188 ~~~~~~i~~~G~~~~~k~~~~li~~~------~~l~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 259 (359)
T cd03823 188 PGGRLRFGFIGQLTPHKGVDLLLEAF------KRLPRGDI-EL-VIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDF 259 (359)
T ss_pred CCCceEEEEEecCccccCHHHHHHHH------HHHHhcCc-EE-EEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHH
Confidence 3456777788865 334444443 33333343 44 5567654322211000124689999998 679999
Q ss_pred hhhccEEEe-----cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 83 LRSASLVIS-----HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 83 ~~~adlvIs-----haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
|+.||++|. -+...++.|++++|+|+|+-+.. ...+.+.+.+.|+.. +.+++.+++.++.
T Consensus 260 ~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~--------~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~ 327 (359)
T cd03823 260 YAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIG--------GMAELVRDGVNGLLFPPGDAEDLAAALERLI 327 (359)
T ss_pred HHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC--------CHHHHhcCCCcEEEECCCCHHHHHHHHHHHH
Confidence 999999994 33456899999999999975432 244556665456543 5688999988875
No 53
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.35 E-value=1.7e-05 Score=58.32 Aligned_cols=129 Identities=16% Similarity=0.235 Sum_probs=80.0
Q ss_pred CCCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChh--hH
Q 042754 9 SLKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSS--SI 79 (178)
Q Consensus 9 ~~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~--~~ 79 (178)
++++.++++.|.. +...+++++. ..... ...+ -.++++|....... . ........++.++++.+ ++
T Consensus 12 ~~~~~~il~~g~~~~~K~~~~li~a~~--~l~~~-~~~~--~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 86 (172)
T PF00534_consen 12 PDKKKIILFIGRLDPEKGIDLLIEAFK--KLKEK-KNPN--YKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDEL 86 (172)
T ss_dssp -TTSEEEEEESESSGGGTHHHHHHHHH--HHHHH-HHTT--EEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHH
T ss_pred CCCCeEEEEEecCccccCHHHHHHHHH--HHHhh-cCCC--eEEEEEccccccccccccccccccccccccccccccccc
Confidence 3456677777764 4556666652 11111 1233 46667773322111 1 01112346899999987 79
Q ss_pred HHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 80 ADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 80 ~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
..++..||++|+. +.+.++.|++++|+|.|+ +.. ..+.+.+.+...|+.. +++++.++|.++.
T Consensus 87 ~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~-~~~-------~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l 156 (172)
T PF00534_consen 87 DELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIA-SDI-------GGNNEIINDGVNGFLFDPNDIEELADAIEKLL 156 (172)
T ss_dssp HHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEE-ESS-------THHHHHSGTTTSEEEESTTSHHHHHHHHHHHH
T ss_pred ccccccceeccccccccccccccccccccccceee-ccc-------cCCceeeccccceEEeCCCCHHHHHHHHHHHH
Confidence 9999999999987 677899999999999996 432 1345666666656654 5678888888875
No 54
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.33 E-value=9e-06 Score=64.84 Aligned_cols=125 Identities=16% Similarity=0.203 Sum_probs=77.8
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCccccccc---ccCCcceEEEEeCh--hh
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPTKSL---GEDGLMAVDYFTFS--SS 78 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~~~~---~~~~~~nv~v~~~~--~~ 78 (178)
..+..++..|+. +...+.+.+ ..+... ++ ++ +++|.......... ......++.+.+++ ++
T Consensus 197 ~~~~~i~~~g~~~~~k~~~~~i~~~------~~~~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 268 (374)
T cd03801 197 EDEPVILFVGRLVPRKGVDLLLEAL------AKLRKEYPDV-RL-VIVGDGPLREELEALAAELGLGDRVTFLGFVPDED 268 (374)
T ss_pred CCCeEEEEecchhhhcCHHHHHHHH------HHHhhhcCCe-EE-EEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhh
Confidence 345667777765 334444444 233332 33 44 45564432111100 01234689999998 67
Q ss_pred HHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 79 IADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 79 ~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
+..+|..||++|.- +..+++.|++++|+|+|+.+.+ ...+.+.+.+.++.. +++++.++|.++.
T Consensus 269 ~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~--------~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~ 339 (374)
T cd03801 269 LPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVG--------GIPEVVEDGETGLLVPPGDPEALAEAILRLL 339 (374)
T ss_pred HHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCC--------ChhHHhcCCcceEEeCCCCHHHHHHHHHHHH
Confidence 99999999999953 4568999999999999975543 234455545555433 4688999988874
No 55
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.27 E-value=6.6e-06 Score=66.81 Aligned_cols=124 Identities=19% Similarity=0.230 Sum_probs=78.6
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChhhHHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSSSIAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~~~~~ 81 (178)
.+.++++.|+. |...+.+++ ..+.. .++ ++++ +|....... . ........++.+.++.+++..
T Consensus 187 ~~~~~l~~g~~~~~kg~~~li~a~------~~l~~~~~~~-~l~i-~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 258 (360)
T cd04951 187 DTFVILAVGRLVEAKDYPNLLKAF------AKLLSDYLDI-KLLI-AGDGPLRATLERLIKALGLSNRVKLLGLRDDIAA 258 (360)
T ss_pred CCEEEEEEeeCchhcCcHHHHHHH------HHHHhhCCCe-EEEE-EcCCCcHHHHHHHHHhcCCCCcEEEecccccHHH
Confidence 45667777754 344455444 23322 233 5554 555432111 1 001123457999999989999
Q ss_pred HhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccC
Q 042754 82 HLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMD 150 (178)
Q Consensus 82 ~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~ 150 (178)
+|+.||++|.-+. .+++.|++++|+|+|+-... .+.+.+.+.|..+. .+++++.+++.++.
T Consensus 259 ~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~~--------~~~e~i~~~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 259 YYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDAG--------GVREVVGDSGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred HHHhhceEEecccccCCChHHHHHHHcCCCEEEecCC--------ChhhEecCCceEeCCCCHHHHHHHHHHHH
Confidence 9999999998764 68999999999999974332 23444555565543 47888999998874
No 56
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.27 E-value=1e-05 Score=64.91 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=77.4
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc---cc-ccCCcceEEEEeChhhHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK---SL-GEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~---~~-~~~~~~nv~v~~~~~~~~ 80 (178)
.+.++++.|+. |.+.+.+++ ..+.. .++ ++ +++|........ .. ......++.+.++.+++.
T Consensus 192 ~~~~i~~~G~~~~~K~~~~li~a~------~~l~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 263 (365)
T cd03807 192 DTFLIGIVARLHPQKDHATLLRAA------ALLLKKFPNA-RL-LLVGDGPDRANLELLALKELGLEDKVILLGERSDVP 263 (365)
T ss_pred CCeEEEEecccchhcCHHHHHHHH------HHHHHhCCCe-EE-EEecCCcchhHHHHHHHHhcCCCceEEEccccccHH
Confidence 45677788865 344455544 23332 233 44 445654321111 01 112345788888888899
Q ss_pred HHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccC
Q 042754 81 DHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~ 150 (178)
.+|+.||++|..+. .+++.|++++|+|+|+-... + +.+.+.+.|..+. .+++++.+++.++.
T Consensus 264 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~----~~e~~~~~g~~~~~~~~~~l~~~i~~l~ 330 (365)
T cd03807 264 ALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----D----NAELVGDTGFLVPPGDPEALAEAIEALL 330 (365)
T ss_pred HHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----C----hHHHhhcCCEEeCCCCHHHHHHHHHHHH
Confidence 99999999997654 47999999999999974432 2 3344444454443 37888999988875
No 57
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.25 E-value=1.9e-05 Score=63.30 Aligned_cols=127 Identities=15% Similarity=0.187 Sum_probs=78.6
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-c--cccCCcceEEEEeChh--hHHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-S--LGEDGLMAVDYFTFSS--SIAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-~--~~~~~~~nv~v~~~~~--~~~~ 81 (178)
.+..++..|+. +...+.+++ ..+......-.++++|........ . .......++.+.++++ ++.+
T Consensus 201 ~~~~i~~~g~~~~~k~~~~li~~~------~~~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 274 (377)
T cd03798 201 DKKVILFVGRLVPRKGIDYLIEAL------ARLLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPA 274 (377)
T ss_pred CceEEEEeccCccccCHHHHHHHH------HHHHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHH
Confidence 56677777865 344455444 333332111344556765432111 0 0012346899999985 4889
Q ss_pred HhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccCc
Q 042754 82 HLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMDL 151 (178)
Q Consensus 82 ~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~~ 151 (178)
++..||++|.- +..+++.|++++|+|.|+-+.. ...+.+.+.+.|+.. +++++.++|.++..
T Consensus 275 ~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~--------~~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~ 343 (377)
T cd03798 275 YYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVG--------GIPEIITDGENGLLVPPGDPEALAEAILRLLA 343 (377)
T ss_pred HHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCC--------ChHHHhcCCcceeEECCCCHHHHHHHHHHHhc
Confidence 99999999943 4568999999999999974432 134455565555533 77888888888753
No 58
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.25 E-value=5.7e-06 Score=67.72 Aligned_cols=126 Identities=14% Similarity=0.165 Sum_probs=78.4
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-cc--cccCCcceEEEEeChh--hHHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-KS--LGEDGLMAVDYFTFSS--SIAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~~--~~~~~~~nv~v~~~~~--~~~~ 81 (178)
.+..+++.|+. +...+++++ ..+.+....-.++++|....... .. .......++++.++++ ++..
T Consensus 187 ~~~~i~~~G~~~~~K~~~~li~a~------~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~ 260 (367)
T cd05844 187 RPPRILFVGRFVEKKGPLLLLEAF------ARLARRVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRE 260 (367)
T ss_pred CCcEEEEEEeeccccChHHHHHHH------HHHHHhCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHH
Confidence 45567777865 334455444 33332211134455676532211 10 0011346788889874 5999
Q ss_pred HhhhccEEEecC----------ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHc
Q 042754 82 HLRSASLVISHA----------GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAG 148 (178)
Q Consensus 82 ~~~~adlvIsha----------G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~ 148 (178)
+|+.||++|.-+ -++++.|++++|+|+|.-+.. .+++.+.+.+.|+.. +++++.++|.+
T Consensus 261 ~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~--------~~~e~i~~~~~g~~~~~~d~~~l~~~i~~ 332 (367)
T cd05844 261 LMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG--------GIPEAVEDGETGLLVPEGDVAALAAALGR 332 (367)
T ss_pred HHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC--------CchhheecCCeeEEECCCCHHHHHHHHHH
Confidence 999999988532 358999999999999975543 144555555556543 77889999988
Q ss_pred cC
Q 042754 149 MD 150 (178)
Q Consensus 149 l~ 150 (178)
+.
T Consensus 333 l~ 334 (367)
T cd05844 333 LL 334 (367)
T ss_pred HH
Confidence 75
No 59
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.24 E-value=1.8e-05 Score=62.87 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=76.7
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc---ccccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK---SLGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~---~~~~~~~~nv~v~~~~~~~~ 80 (178)
..+..+++.|+. +...+.+++ ..+.+ .++ ++ +++|........ ........++.+.++.+++.
T Consensus 176 ~~~~~i~~~g~~~~~K~~~~l~~~~------~~l~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 247 (348)
T cd03820 176 LKSKRILAVGRLVPQKGFDLLIEAW------AKIAKKHPDW-KL-RIVGDGPEREALEALIKELGLEDRVILLGFTKNIE 247 (348)
T ss_pred CCCcEEEEEEeeccccCHHHHHHHH------HHHHhcCCCe-EE-EEEeCCCCHHHHHHHHHHcCCCCeEEEcCCcchHH
Confidence 345566777754 444555554 33332 233 44 455654322111 01112345788888878899
Q ss_pred HHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCC-CEEEe---ChhhHHHHHHccC
Q 042754 81 DHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARK-HLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G-~~~~~---~~~~L~~~i~~l~ 150 (178)
.+|..||++|.-+. .+++.|++++|+|+|+-+... .+. .+.+.+ .|+.. +++++.++|.++.
T Consensus 248 ~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~ll 317 (348)
T cd03820 248 EYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPT----GPS----EIIEDGVNGLLVPNGDVEALAEALLRLM 317 (348)
T ss_pred HHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCC----chH----hhhccCcceEEeCCCCHHHHHHHHHHHH
Confidence 99999999998762 579999999999999755431 122 233333 55433 5688999998884
No 60
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.23 E-value=2.8e-05 Score=63.26 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=78.8
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc---ccccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK---SLGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~---~~~~~~~~nv~v~~~~~~~~ 80 (178)
+.+.++++.|+. |.+.+.+++ ..+.. .++ + ++++|........ ........++...++.+++.
T Consensus 190 ~~~~~i~~vGr~~~~Kg~~~li~a~------~~l~~~~~~~-~-l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 261 (358)
T cd03812 190 EDKFVIGHVGRFSEQKNHEFLIEIF------AELLKKNPNA-K-LLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVP 261 (358)
T ss_pred CCCEEEEEEeccccccChHHHHHHH------HHHHHhCCCe-E-EEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHH
Confidence 456778888865 455555555 33333 233 4 4456765432111 00112346789999888899
Q ss_pred HHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-e--ChhhHHHHHHccC
Q 042754 81 DHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-A--HPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~--~~~~L~~~i~~l~ 150 (178)
++++.||++|.- +-..+++|++++|+|+|.-... + ....+.+ +.++. . +++++.++|.++.
T Consensus 262 ~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~----~----~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~ 329 (358)
T cd03812 262 ELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTI----T----KEVDLTD-LVKFLSLDESPEIWAEEILKLK 329 (358)
T ss_pred HHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEcCC----c----hhhhhcc-CccEEeCCCCHHHHHHHHHHHH
Confidence 999999999975 3468999999999999974433 1 2233444 33432 2 4699999999885
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.22 E-value=2.7e-05 Score=63.26 Aligned_cols=126 Identities=14% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-------ccccCCcceEEEEeChhh
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-------SLGEDGLMAVDYFTFSSS 78 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-------~~~~~~~~nv~v~~~~~~ 78 (178)
+.+.+++..|.. |...+.+++ ..+...+..--++++|........ ........++++.+|.++
T Consensus 183 ~~~~~i~~~Gr~~~~Kg~~~li~~~------~~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 256 (355)
T cd03819 183 KGKPVILLPGRLTRWKGQEVFIEAL------ARLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSD 256 (355)
T ss_pred CCceEEEEeeccccccCHHHHHHHH------HHHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCccc
Confidence 345567777763 455565555 333332111345566765321110 000123467999999888
Q ss_pred HHHHhhhccEEEecC-----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHcc
Q 042754 79 IADHLRSASLVISHA-----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGM 149 (178)
Q Consensus 79 ~~~~~~~adlvIsha-----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l 149 (178)
+..+|+.||++|+-+ .+++++|++++|+|+|+-... + ..+.+.+.+.|+. .+++.+.++|..+
T Consensus 257 ~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~----~----~~e~i~~~~~g~~~~~~~~~~l~~~i~~~ 327 (355)
T cd03819 257 MPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHG----G----ARETVRPGETGLLVPPGDAEALAQALDQI 327 (355)
T ss_pred HHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCC----C----cHHHHhCCCceEEeCCCCHHHHHHHHHHH
Confidence 999999999999755 247999999999999964322 2 2334444434543 3788888888644
No 62
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.19 E-value=3.1e-05 Score=65.54 Aligned_cols=78 Identities=14% Similarity=0.075 Sum_probs=61.4
Q ss_pred eEEEEeChhhHHHHhhhccEEEe-----cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhH
Q 042754 69 AVDYFTFSSSIADHLRSASLVIS-----HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSL 142 (178)
Q Consensus 69 nv~v~~~~~~~~~~~~~adlvIs-----haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L 142 (178)
++.+.++..+|..+|+.||+++. -+|+.++.|++++|+|+|.-|... ++.+..+.+.+.|+++. .++++|
T Consensus 303 ~v~l~~~~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~----~~~e~~~~~~~~g~~~~~~d~~~L 378 (425)
T PRK05749 303 DVLLGDTMGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTF----NFKEIFERLLQAGAAIQVEDAEDL 378 (425)
T ss_pred cEEEEecHHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCcc----CHHHHHHHHHHCCCeEEECCHHHH
Confidence 46666777789999999999543 246668999999999999877642 36677787778888875 488999
Q ss_pred HHHHHccC
Q 042754 143 HQVIAGMD 150 (178)
Q Consensus 143 ~~~i~~l~ 150 (178)
.++|.++.
T Consensus 379 a~~l~~ll 386 (425)
T PRK05749 379 AKAVTYLL 386 (425)
T ss_pred HHHHHHHh
Confidence 99998875
No 63
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.17 E-value=2.2e-05 Score=63.41 Aligned_cols=126 Identities=18% Similarity=0.271 Sum_probs=77.2
Q ss_pred CCCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCccccccc--ccCCcceEEEEeChh--hH
Q 042754 9 SLKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTKSL--GEDGLMAVDYFTFSS--SI 79 (178)
Q Consensus 9 ~~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~~~--~~~~~~nv~v~~~~~--~~ 79 (178)
...+.++++.|+. +...+.+++ ..+... ++ ++ +++|.......... ......++.+.++++ ++
T Consensus 217 ~~~~~~i~~~G~~~~~k~~~~l~~~~------~~l~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~ 288 (394)
T cd03794 217 LDDKFVVLYAGNIGRAQGLDTLLEAA------ALLKDRPDI-RF-LIVGDGPEKEELKELAKALGLDNVTFLGRVPKEEL 288 (394)
T ss_pred CCCcEEEEEecCcccccCHHHHHHHH------HHHhhcCCe-EE-EEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHH
Confidence 3456788888875 344455554 333332 44 54 45665432111100 011236899999874 68
Q ss_pred HHHhhhccEEEecCC---------hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHH
Q 042754 80 ADHLRSASLVISHAG---------SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIA 147 (178)
Q Consensus 80 ~~~~~~adlvIshaG---------~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~ 147 (178)
.++|..||++|.... .+++.|++++|+|+|+.+... .+. .+.+.+.++. .+++++.++|.
T Consensus 289 ~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~----~~~----~~~~~~~g~~~~~~~~~~l~~~i~ 360 (394)
T cd03794 289 PELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGE----SAE----LVEEAGAGLVVPPGDPEALAAAIL 360 (394)
T ss_pred HHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCC----chh----hhccCCcceEeCCCCHHHHHHHHH
Confidence 899999999995433 445899999999999877652 122 2233244433 27888999998
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
++.
T Consensus 361 ~~~ 363 (394)
T cd03794 361 ELL 363 (394)
T ss_pred HHH
Confidence 885
No 64
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.15 E-value=3.6e-05 Score=61.93 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=76.7
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc---c--cccCCcceEEEEeChh-
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK---S--LGEDGLMAVDYFTFSS- 77 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~---~--~~~~~~~nv~v~~~~~- 77 (178)
..+.++++.|+. +...+.+++ ..+.. .++ + ++++|........ . .......++.+.+|++
T Consensus 201 ~~~~~i~~~G~~~~~K~~~~li~a~------~~l~~~~~~~-~-l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 272 (375)
T cd03821 201 PDKRIILFLGRLHPKKGLDLLIEAF------AKLAERFPDW-H-LVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYG 272 (375)
T ss_pred CCCcEEEEEeCcchhcCHHHHHHHH------HHhhhhcCCe-E-EEEECCCCcchHHHHHHHHHhcCccceEEEcCCCCh
Confidence 345567777765 344444444 33333 233 4 4566754321110 0 1112346899999987
Q ss_pred -hHHHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChhhHHHHHHccC
Q 042754 78 -SIADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AHPQSLHQVIAGMD 150 (178)
Q Consensus 78 -~~~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~~~~~L~~~i~~l~ 150 (178)
++..+|..||++|.-.- ..++.|++++|+|+|+-+.. + ..+.+.+ +.++. .+.+++.++|.++.
T Consensus 273 ~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~----~~~~~~~-~~~~~~~~~~~~~~~~i~~l~ 343 (375)
T cd03821 273 EDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKV----P----WQELIEY-GCGWVVDDDVDALAAALRRAL 343 (375)
T ss_pred HHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCC----C----HHHHhhc-CceEEeCCChHHHHHHHHHHH
Confidence 68999999999987653 57999999999999975433 2 2233333 55543 35588988888875
No 65
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.12 E-value=2.6e-05 Score=62.88 Aligned_cols=125 Identities=18% Similarity=0.219 Sum_probs=76.5
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccccc---ccCCcceEEEEeChh--h
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKSL---GEDGLMAVDYFTFSS--S 78 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~~---~~~~~~nv~v~~~~~--~ 78 (178)
+.+.+++..|+. +.+.+.+.+ ..+.. .++ ++ +++|.......... ......++...++++ +
T Consensus 200 ~~~~~i~~~G~~~~~k~~~~l~~~~------~~~~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 271 (374)
T cd03817 200 EDEPVLLYVGRLAKEKNIDFLIRAF------ARLLKEEPDV-KL-VIVGDGPEREELEELARELGLADRVIFTGFVPREE 271 (374)
T ss_pred CCCeEEEEEeeeecccCHHHHHHHH------HHHHHhCCCe-EE-EEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHH
Confidence 345677777864 344555554 23332 334 44 44565432111100 012346899999984 5
Q ss_pred HHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe--ChhhHHHHHHccC
Q 042754 79 IADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA--HPQSLHQVIAGMD 150 (178)
Q Consensus 79 ~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~--~~~~L~~~i~~l~ 150 (178)
+..+|+.||++|.-+ ...++.|++++|+|+|+.... ..++.+.+.+.++.. +..++.+++.++.
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~--------~~~~~i~~~~~g~~~~~~~~~~~~~i~~l~ 341 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP--------GLPDLVADGENGFLFPPGDEALAEALLRLL 341 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC--------ChhhheecCceeEEeCCCCHHHHHHHHHHH
Confidence 889999999999543 357999999999999975543 234555665556543 2227888888775
No 66
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.12 E-value=3.4e-05 Score=63.20 Aligned_cols=124 Identities=10% Similarity=0.144 Sum_probs=77.1
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh-CCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChhhHHHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTR-RGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSSSIADH 82 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~-~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~~~~~~ 82 (178)
.+.++++.|.. +...+.+++ ..+.. .+. ++ ++.|....... . ........++.+.++.+++.++
T Consensus 196 ~~~~il~~g~l~~~K~~~~li~a~------~~l~~~~~~-~l-~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~ 267 (371)
T cd04962 196 GEKVLIHISNFRPVKRIDDVIRIF------AKVRKEVPA-RL-LLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEEL 267 (371)
T ss_pred CCeEEEEecccccccCHHHHHHHH------HHHHhcCCc-eE-EEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHH
Confidence 34567777754 455555554 23332 343 54 44565432111 1 0011234579999999999999
Q ss_pred hhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccC
Q 042754 83 LRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 83 ~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~ 150 (178)
|+.||++|.- +...++.|++++|+|+|+-... ..++.+.+...|+.. +.+++.+++.++.
T Consensus 268 ~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~--------~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~ 334 (371)
T cd04962 268 LSIADLFLLPSEKESFGLAALEAMACGVPVVASNAG--------GIPEVVKHGETGFLVDVGDVEAMAEYALSLL 334 (371)
T ss_pred HHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCC--------CchhhhcCCCceEEcCCCCHHHHHHHHHHHH
Confidence 9999999954 3457999999999999975432 134455554445433 6778888887764
No 67
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.11 E-value=0.00012 Score=60.56 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=86.7
Q ss_pred CCcEEEEEeCCc------cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHh
Q 042754 10 LKRIVFVTVGTT------CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHL 83 (178)
Q Consensus 10 ~~~~ilVt~Gs~------~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~ 83 (178)
+.+.|++=.-+. +...+...+ ++.|.+.+. . |+.......++.... . -++.+.+-.=+..+++
T Consensus 178 ~~~yIvvR~~~~~A~y~~~~~~i~~~i-----i~~L~~~~~-~-vV~ipr~~~~~~~~~--~--~~~~i~~~~vd~~~Ll 246 (335)
T PF04007_consen 178 DEPYIVVRPEAWKASYDNGKKSILPEI-----IEELEKYGR-N-VVIIPRYEDQRELFE--K--YGVIIPPEPVDGLDLL 246 (335)
T ss_pred CCCEEEEEeccccCeeecCccchHHHH-----HHHHHhhCc-e-EEEecCCcchhhHHh--c--cCccccCCCCCHHHHH
Confidence 467777766543 222333333 556666653 4 444443332221111 1 1233332211355899
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccCcc--cCCCCCCC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMDLE--SLLPYQPG 160 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~~~--~~~~~~~~ 160 (178)
..||++|+-|| +...||..+|+|+|-+ ++ +.-...=+++.+.|+.+. .+++++.+.+.+.... +.+.....
T Consensus 247 ~~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~----g~~~~vd~~L~~~Gll~~~~~~~ei~~~v~~~~~~~~~~~~~~~~ 320 (335)
T PF04007_consen 247 YYADLVIGGGG-TMAREAALLGTPAISC-FP----GKLLAVDKYLIEKGLLYHSTDPDEIVEYVRKNLGKRKKIREKKSE 320 (335)
T ss_pred HhcCEEEeCCc-HHHHHHHHhCCCEEEe-cC----CcchhHHHHHHHCCCeEecCCHHHHHHHHHHhhhcccchhhhhcc
Confidence 99999999555 8899999999999975 33 222234477899999764 4888888877766432 22222234
Q ss_pred Chh-HHHHHHHHhc
Q 042754 161 DAT-PVAKLINRFL 173 (178)
Q Consensus 161 ~~~-~i~~~i~~~~ 173 (178)
+.. .|.+.|++.+
T Consensus 321 d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 321 DPTDLIIEEIEEYI 334 (335)
T ss_pred CHHHHHHHHHHHhh
Confidence 555 7777777654
No 68
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.10 E-value=6.4e-05 Score=59.74 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=75.1
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCccccc---ccccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPTK---SLGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~~---~~~~~~~~nv~v~~~~~~~~ 80 (178)
+.+.++++.|+. +...+.+++ ..+... ++ ++++ +|........ ........++.+.++.+++.
T Consensus 187 ~~~~~i~~~g~~~~~k~~~~~i~~~------~~l~~~~~~~-~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 258 (353)
T cd03811 187 PDGPVILAVGRLSPQKGFDTLIRAF------ALLRKEGPDA-RLVI-LGDGPLREELEALAKELGLADRVHFLGFQSNPY 258 (353)
T ss_pred CCceEEEEEecchhhcChHHHHHHH------HHhhhcCCCc-eEEE-EcCCccHHHHHHHHHhcCCCccEEEecccCCHH
Confidence 456778888875 333444444 333332 44 5544 5654321111 00112346889999999999
Q ss_pred HHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHc
Q 042754 81 DHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAG 148 (178)
Q Consensus 81 ~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~ 148 (178)
+++..||++|.- +..+++.|++++|+|+|+-... ...+.+.+...|+.. +++.+.+.+..
T Consensus 259 ~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~--------~~~e~i~~~~~g~~~~~~~~~~~~~~~~~ 325 (353)
T cd03811 259 PYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP--------GPREILEDGENGLLVPVGDEAALAAAALA 325 (353)
T ss_pred HHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC--------ChHHHhcCCCceEEECCCCHHHHHHHHHH
Confidence 999999999964 3357899999999999974332 245566666666654 45556333333
No 69
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.09 E-value=7.9e-05 Score=61.48 Aligned_cols=76 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred cceEEEEeChh--hHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 042754 67 LMAVDYFTFSS--SIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA--- 137 (178)
Q Consensus 67 ~~nv~v~~~~~--~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~--- 137 (178)
..++.+.+|++ ++..+++.||++++.+ -..++.|++++|+|+|+-... + ..+.+++.+.|+..
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~----~~e~i~~~~~g~~~~~~ 353 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVG----G----PRDIVVDGVTGLLVDPR 353 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCC----C----HHHHccCCCCeEEeCCC
Confidence 36899999975 5888999999999542 246899999999999874432 2 34456665666644
Q ss_pred ChhhHHHHHHccC
Q 042754 138 HPQSLHQVIAGMD 150 (178)
Q Consensus 138 ~~~~L~~~i~~l~ 150 (178)
+++++.++|.++.
T Consensus 354 ~~~~l~~~i~~l~ 366 (398)
T cd03800 354 DPEALAAALRRLL 366 (398)
T ss_pred CHHHHHHHHHHHH
Confidence 6888999998875
No 70
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.08 E-value=5e-05 Score=65.16 Aligned_cols=123 Identities=12% Similarity=0.168 Sum_probs=75.3
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhccE
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSASL 88 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~adl 88 (178)
+.++++.|+.+...-.+.+ ++.+... ++ +++ ++|............ ...++.+.+|+ +++..+|+.||+
T Consensus 263 ~~~i~~vGrl~~~K~~~~l-----i~a~~~~~~~-~l~-ivG~G~~~~~l~~~~-~~~~V~f~G~v~~~ev~~~~~~aDv 334 (465)
T PLN02871 263 KPLIVYVGRLGAEKNLDFL-----KRVMERLPGA-RLA-FVGDGPYREELEKMF-AGTPTVFTGMLQGDELSQAYASGDV 334 (465)
T ss_pred CeEEEEeCCCchhhhHHHH-----HHHHHhCCCc-EEE-EEeCChHHHHHHHHh-ccCCeEEeccCCHHHHHHHHHHCCE
Confidence 4567788987654334444 2223332 43 554 567554321111110 12478888998 569999999999
Q ss_pred EEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh---CCCEEE---eChhhHHHHHHccC
Q 042754 89 VISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA---RKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 89 vIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~---~G~~~~---~~~~~L~~~i~~l~ 150 (178)
+|.-+. ..++.|++++|+|+|..... + ..+.+.+ .+.|+. .+++.+.++|.++.
T Consensus 335 ~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g----~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 335 FVMPSESETLGFVVLEAMASGVPVVAARAG----G----IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred EEECCcccccCcHHHHHHHcCCCEEEcCCC----C----cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 997653 45799999999999975432 1 2223333 344543 37888998888874
No 71
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.07 E-value=6e-05 Score=61.06 Aligned_cols=127 Identities=19% Similarity=0.204 Sum_probs=78.4
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc---ccccCCcceEEEEeCh--hhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK---SLGEDGLMAVDYFTFS--SSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~---~~~~~~~~nv~v~~~~--~~~~ 80 (178)
+.+..+++.|+. +...+.+.+ ..+...+..--++.+|........ ........++.+.+++ +++.
T Consensus 177 ~~~~~i~~~g~~~~~k~~~~l~~~~------~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~ 250 (355)
T cd03799 177 GEPLRILSVGRLVEKKGLDYLLEAL------ALLKDRGIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVR 250 (355)
T ss_pred CCCeEEEEEeeeccccCHHHHHHHH------HHHhhcCCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHH
Confidence 345667777864 344555544 333332111234456765432110 0001234689999998 4699
Q ss_pred HHhhhccEEEe----------cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHH
Q 042754 81 DHLRSASLVIS----------HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIA 147 (178)
Q Consensus 81 ~~~~~adlvIs----------haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~ 147 (178)
.+++.||+++. -+..+++.|++++|+|.|+.+... ..+.+.+...++.. +.+++.++|.
T Consensus 251 ~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~--------~~~~i~~~~~g~~~~~~~~~~l~~~i~ 322 (355)
T cd03799 251 ELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG--------IPELVEDGETGLLVPPGDPEALADAIE 322 (355)
T ss_pred HHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC--------cchhhhCCCceEEeCCCCHHHHHHHHH
Confidence 99999999998 345689999999999999855431 12234444355543 6788999998
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
++.
T Consensus 323 ~~~ 325 (355)
T cd03799 323 RLL 325 (355)
T ss_pred HHH
Confidence 875
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.07 E-value=4e-05 Score=61.96 Aligned_cols=75 Identities=20% Similarity=0.241 Sum_probs=53.0
Q ss_pred cceEEEEeC-h--hhHHHHhhhccEEEec------CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-
Q 042754 67 LMAVDYFTF-S--SSIADHLRSASLVISH------AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC- 136 (178)
Q Consensus 67 ~~nv~v~~~-~--~~~~~~~~~adlvIsh------aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~- 136 (178)
..++...+. + +++..+|+.||++|.- +-.++++|++++|+|+|.-+... .+.+.+.+.++.
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~---------~~~i~~~~~g~~~ 316 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH---------AEEVLDGGTGLLV 316 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC---------hheeeeCCCcEEE
Confidence 457887755 4 4689999999999942 34568999999999999755431 222344444443
Q ss_pred --eChhhHHHHHHccC
Q 042754 137 --AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 --~~~~~L~~~i~~l~ 150 (178)
.+.+++.+++.++.
T Consensus 317 ~~~d~~~~~~~l~~l~ 332 (366)
T cd03822 317 PPGDPAALAEAIRRLL 332 (366)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 36788999988874
No 73
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.06 E-value=4.3e-05 Score=63.45 Aligned_cols=149 Identities=18% Similarity=0.228 Sum_probs=81.4
Q ss_pred CCCcEEEEEeC--Cc-cHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCccccc--ccccCCcceEEEEeCh--hhHH
Q 042754 9 SLKRIVFVTVG--TT-CFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYFTFS--SSIA 80 (178)
Q Consensus 9 ~~~~~ilVt~G--s~-~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~~~~--~~~~ 80 (178)
..++.+|||.= +. ....-.+.+ .++++.+... ++ .+++...++...... ...... .|+++++.. .++-
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i--~~~l~~L~~~~~~-~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~~l 253 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQI--LEALKALAERQNV-PVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEEYL 253 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHH--HHHHHHHHHHTTE-EEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHHHH
T ss_pred cCCCEEEEEeCcchhcCChHHHHHH--HHHHHHHHhcCCC-cEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHHHH
Confidence 56789999983 22 212222222 2234455543 55 788877755422111 111122 378777654 3588
Q ss_pred HHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChhhHHHHHHccCcc------
Q 042754 81 DHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AHPQSLHQVIAGMDLE------ 152 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~~~~~L~~~i~~l~~~------ 152 (178)
.+|+.|++||+-+| |-.-|+.++|+|+|.+ +.. ..-|. ....|..+. .+++++.+++.+++..
T Consensus 254 ~ll~~a~~vvgdSs-GI~eEa~~lg~P~v~i-R~~--geRqe-----~r~~~~nvlv~~~~~~I~~ai~~~l~~~~~~~~ 324 (346)
T PF02350_consen 254 SLLKNADLVVGDSS-GIQEEAPSLGKPVVNI-RDS--GERQE-----GRERGSNVLVGTDPEAIIQAIEKALSDKDFYRK 324 (346)
T ss_dssp HHHHHESEEEESSH-HHHHHGGGGT--EEEC-SSS---S-HH-----HHHTTSEEEETSSHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHhcceEEEEcCc-cHHHHHHHhCCeEEEe-cCC--CCCHH-----HHhhcceEEeCCCHHHHHHHHHHHHhChHHHHh
Confidence 99999999999999 4444999999999987 221 11232 223444432 4888999998888532
Q ss_pred ---cCCCCCCCChh-HHHHHHH
Q 042754 153 ---SLLPYQPGDAT-PVAKLIN 170 (178)
Q Consensus 153 ---~~~~~~~~~~~-~i~~~i~ 170 (178)
...+|.+++++ +|+++|+
T Consensus 325 ~~~~~npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 325 LKNRPNPYGDGNASERIVEILK 346 (346)
T ss_dssp HHCS--TT-SS-HHHHHHHHHH
T ss_pred hccCCCCCCCCcHHHHHHHhhC
Confidence 23478888888 9998874
No 74
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.04 E-value=3.4e-05 Score=64.66 Aligned_cols=125 Identities=18% Similarity=0.227 Sum_probs=73.9
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhc
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSA 86 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~a 86 (178)
.+++..|+. +.+.+...+ ..++..+.. .++ ++ ++.|.......... ....+|.+.++++++..+|+.|
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~--~~~~~~l~~~~p~~-~l-~ivG~g~~~~~~~l--~~~~~V~~~G~v~~~~~~~~~a 298 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFA--ERVFPAVRARRPAA-EF-YIVGAKPSPAVRAL--AALPGVTVTGSVADVRPYLAHA 298 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHH--HHHHHHHHHHCCCc-EE-EEECCCChHHHHHh--ccCCCeEEeeecCCHHHHHHhC
Confidence 467777865 344444333 122333332 233 54 45676542211111 1235799999999999999999
Q ss_pred cEEE--ec--CCh-HHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccC
Q 042754 87 SLVI--SH--AGS-GSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMD 150 (178)
Q Consensus 87 dlvI--sh--aG~-~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~ 150 (178)
|++| ++ .|. +.+.|++++|+|+|.-+.. .++... ..+.|+.+..+++++.++|.++.
T Consensus 299 dv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~--~~~i~~-----~~~~g~lv~~~~~~la~ai~~ll 360 (397)
T TIGR03087 299 AVAVAPLRIARGIQNKVLEAMAMAKPVVASPEA--AEGIDA-----LPGAELLVAADPADFAAAILALL 360 (397)
T ss_pred CEEEecccccCCcccHHHHHHHcCCCEEecCcc--cccccc-----cCCcceEeCCCHHHHHHHHHHHH
Confidence 9998 33 232 3699999999999986532 111110 01223333358899999998875
No 75
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.98 E-value=0.00011 Score=60.72 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=77.8
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc-cc--cccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT-KS--LGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~-~~--~~~~~~~nv~v~~~~~~~~ 80 (178)
+.+.++++.|.. |...+.+++ ..+.+...+ .++ .++++|....... .. .......++.+.++.+++.
T Consensus 192 ~~~~~i~~vGrl~~~Kg~~~li~a~--~~l~~~~~~~~~~~--~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 267 (374)
T TIGR03088 192 DESVVVGTVGRLQAVKDQPTLVRAF--ALLVRQLPEGAERL--RLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVP 267 (374)
T ss_pred CCCeEEEEEecCCcccCHHHHHHHH--HHHHHhCcccccce--EEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHH
Confidence 356788888864 455666665 211111111 122 4455675432111 10 0011234677777888899
Q ss_pred HHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHccC
Q 042754 81 DHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l~ 150 (178)
.+|+.||++|.- |-..++.||+++|+|+|+-... + +.+.+.+...++. .+++++.++|.++.
T Consensus 268 ~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g----~~e~i~~~~~g~~~~~~d~~~la~~i~~l~ 336 (374)
T TIGR03088 268 ALMQALDLFVLPSLAEGISNTILEAMASGLPVIATAVG----G----NPELVQHGVTGALVPPGDAVALARALQPYV 336 (374)
T ss_pred HHHHhcCEEEeccccccCchHHHHHHHcCCCEEEcCCC----C----cHHHhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 999999999943 3467999999999999974432 1 3334444444543 37888999998874
No 76
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=97.95 E-value=0.00015 Score=58.98 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=62.1
Q ss_pred eEEEEEeCCCcccccccccCCcceEEEEeChh---hHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCC
Q 042754 46 HLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS---SIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMD 118 (178)
Q Consensus 46 ~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~---~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~ 118 (178)
-.++.+|........ ....++...+|++ ++..+|+.||++|.-+ .++++.|++++|+|+|+.....
T Consensus 226 ~~~~i~G~~~~~~~~----~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~--- 298 (365)
T cd03825 226 IELVVFGASDPEIPP----DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG--- 298 (365)
T ss_pred eEEEEeCCCchhhhc----cCCCceEecCCcCCHHHHHHHHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC---
Confidence 355667765532221 1235788888887 4888999999999954 3589999999999998754431
Q ss_pred chHHHHHHHHHhCCCEEE---eChhhHHHHHHccC
Q 042754 119 NHQSELAEELAARKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 119 ~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l~ 150 (178)
..+.+.+.+.++. .+++++.+++.++.
T Consensus 299 -----~~e~~~~~~~g~~~~~~~~~~~~~~l~~l~ 328 (365)
T cd03825 299 -----IPDIVDHGVTGYLAKPGDPEDLAEGIEWLL 328 (365)
T ss_pred -----ChhheeCCCceEEeCCCCHHHHHHHHHHHH
Confidence 1122333334433 26788999888875
No 77
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.91 E-value=0.0001 Score=59.74 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=74.0
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChhh--HHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSSS--IAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~~--~~~ 81 (178)
.+.++++.|+. +...+++++ ..+. ++ ++ +++|....... . ........||.+.+|+++ +..
T Consensus 190 ~~~~i~~~G~~~~~K~~~~li~a~------~~l~--~~-~l-~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~ 259 (357)
T cd03795 190 GRPFFLFVGRLVYYKGLDVLLEAA------AALP--DA-PL-VIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAA 259 (357)
T ss_pred CCcEEEEecccccccCHHHHHHHH------Hhcc--Cc-EE-EEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHH
Confidence 45567788865 334444443 2232 34 44 44565432111 0 001123468999999864 889
Q ss_pred HhhhccEEEec------CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-CCCEEEe---ChhhHHHHHHccC
Q 042754 82 HLRSASLVISH------AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-RKHLYCA---HPQSLHQVIAGMD 150 (178)
Q Consensus 82 ~~~~adlvIsh------aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-~G~~~~~---~~~~L~~~i~~l~ 150 (178)
+++.||++|.- +.+.++.|++++|+|+|+-.... ... .+.+ .+.|+.. +++.+.++|.++.
T Consensus 260 ~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~----~~~----~i~~~~~~g~~~~~~d~~~~~~~i~~l~ 330 (357)
T cd03795 260 LLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGT----GGS----YVNLHGVTGLVVPPGDPAALAEAIRRLL 330 (357)
T ss_pred HHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCC----chh----HHhhCCCceEEeCCCCHHHHHHHHHHHH
Confidence 99999999832 33568999999999999854431 222 2222 3445433 6888999998885
No 78
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.89 E-value=6.5e-05 Score=53.06 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=48.4
Q ss_pred cceEEEEeChhhHHHHhhhccEEEecC-----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eCh
Q 042754 67 LMAVDYFTFSSSIADHLRSASLVISHA-----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AHP 139 (178)
Q Consensus 67 ~~nv~v~~~~~~~~~~~~~adlvIsha-----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~~~ 139 (178)
..++++.+|++++.++++.||++|.-. -.+++.|++++|+|.|+-+. ......+..+.+.. .++
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~---------~~~~~~~~~~~~~~~~~~~ 122 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN---------GAEGIVEEDGCGVLVANDP 122 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH---------HCHCHS---SEEEE-TT-H
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc---------chhhheeecCCeEEECCCH
Confidence 358999999999999999999998732 24899999999999998543 11223333444443 388
Q ss_pred hhHHHHHHccC
Q 042754 140 QSLHQVIAGMD 150 (178)
Q Consensus 140 ~~L~~~i~~l~ 150 (178)
+++.++|.++.
T Consensus 123 ~~l~~~i~~l~ 133 (135)
T PF13692_consen 123 EELAEAIERLL 133 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 79
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.88 E-value=0.00028 Score=59.06 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=54.7
Q ss_pred cceEEEEeChh--hHHHHhhhccEEEecCC-----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-E--
Q 042754 67 LMAVDYFTFSS--SIADHLRSASLVISHAG-----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY-C-- 136 (178)
Q Consensus 67 ~~nv~v~~~~~--~~~~~~~~adlvIshaG-----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~-~-- 136 (178)
..++.+.++++ ++..+|+.||++|.-+. ..++.|++++|+|+|.-... + +.+.+.+...|+ .
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g----~~Eiv~~~~~G~~l~~ 327 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----G----ITEFVLEGITGYHLAE 327 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCC----C----cHhhcccCCceEEEeC
Confidence 35788888874 69999999999996432 36889999999999975432 1 334444443444 2
Q ss_pred -eChhhHHHHHHccC
Q 042754 137 -AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 -~~~~~L~~~i~~l~ 150 (178)
.+++.|.++|.++.
T Consensus 328 ~~d~~~la~~I~~ll 342 (380)
T PRK15484 328 PMTSDSIISDINRTL 342 (380)
T ss_pred CCCHHHHHHHHHHHH
Confidence 37899999998875
No 80
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=97.87 E-value=0.00037 Score=58.93 Aligned_cols=125 Identities=16% Similarity=0.273 Sum_probs=77.4
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChh--h
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSS--S 78 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~--~ 78 (178)
+.+..+++.|.. |...+++++ ..+.+. ++ ++ ++.|.+..... . ........+|.+.+|.+ +
T Consensus 220 ~~~~~il~vGrl~~~Kg~~~ll~a~------~~l~~~~~~~-~l-~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~e 291 (406)
T PRK15427 220 ATPLEIISVARLTEKKGLHVAIEAC------RQLKEQGVAF-RY-RILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHE 291 (406)
T ss_pred CCCeEEEEEeCcchhcCHHHHHHHH------HHHHhhCCCE-EE-EEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHH
Confidence 345667888865 455566555 233332 33 44 45666543211 1 00112346799999985 5
Q ss_pred HHHHhhhccEEEecC---------C-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHH
Q 042754 79 IADHLRSASLVISHA---------G-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQV 145 (178)
Q Consensus 79 ~~~~~~~adlvIsha---------G-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~ 145 (178)
+.++|+.||++|.-+ | ..+++|++++|+|+|.-... + ..+.+.+...|+. .+++.|.++
T Consensus 292 l~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g----~~E~v~~~~~G~lv~~~d~~~la~a 363 (406)
T PRK15427 292 VKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----G----IPELVEADKSGWLVPENDAQALAQR 363 (406)
T ss_pred HHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----C----chhhhcCCCceEEeCCCCHHHHHHH
Confidence 889999999998632 2 36899999999999975432 1 2334444434543 378889999
Q ss_pred HHccC
Q 042754 146 IAGMD 150 (178)
Q Consensus 146 i~~l~ 150 (178)
|.++.
T Consensus 364 i~~l~ 368 (406)
T PRK15427 364 LAAFS 368 (406)
T ss_pred HHHHH
Confidence 88874
No 81
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.79 E-value=0.00025 Score=59.48 Aligned_cols=136 Identities=15% Similarity=0.162 Sum_probs=85.2
Q ss_pred CCCCcEEEEEeCCccH--HHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc-cccccCCcceEEEEeChhhHHHH
Q 042754 8 VSLKRIVFVTVGTTCF--DALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT-KSLGEDGLMAVDYFTFSSSIADH 82 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~-~~~~~~~~~nv~v~~~~~~~~~~ 82 (178)
+++++.|.+.-||-.. ..+...+ .+....+.+ .+. ++++.+-+...... .........++.+.....+-.++
T Consensus 181 ~~~~~iIaLLPGSR~~EI~rllP~~--l~aa~~l~~~~p~l-~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 257 (373)
T PF02684_consen 181 DPDKPIIALLPGSRKSEIKRLLPIF--LEAAKLLKKQRPDL-QFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDA 257 (373)
T ss_pred CCCCcEEEEeCCCCHHHHHHHHHHH--HHHHHHHHHhCCCe-EEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHH
Confidence 4578899999999743 3444444 223344443 244 66666555433220 00000112233333333356789
Q ss_pred hhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-----------------EeChhhHHHH
Q 042754 83 LRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY-----------------CAHPQSLHQV 145 (178)
Q Consensus 83 ~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~-----------------~~~~~~L~~~ 145 (178)
|.+||+++..+| +.+.|+..+|+|+|++-.. ..=.+..|+++.+..+.- ..+++.|.+.
T Consensus 258 m~~ad~al~~SG-TaTLE~Al~g~P~Vv~Yk~---~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~ 333 (373)
T PF02684_consen 258 MAAADAALAASG-TATLEAALLGVPMVVAYKV---SPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAE 333 (373)
T ss_pred HHhCcchhhcCC-HHHHHHHHhCCCEEEEEcC---cHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHH
Confidence 999999999999 7889999999999987654 234678999998876532 0267778777
Q ss_pred HHccC
Q 042754 146 IAGMD 150 (178)
Q Consensus 146 i~~l~ 150 (178)
+.+++
T Consensus 334 ~~~ll 338 (373)
T PF02684_consen 334 LLELL 338 (373)
T ss_pred HHHHh
Confidence 77764
No 82
>PLN02275 transferase, transferring glycosyl groups
Probab=97.75 E-value=0.00048 Score=57.42 Aligned_cols=74 Identities=19% Similarity=0.200 Sum_probs=52.7
Q ss_pred ceEEEEe-Ch--hhHHHHhhhccEEEe----cCC---hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe
Q 042754 68 MAVDYFT-FS--SSIADHLRSASLVIS----HAG---SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA 137 (178)
Q Consensus 68 ~nv~v~~-~~--~~~~~~~~~adlvIs----haG---~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~ 137 (178)
.|+..++ |. +++..+|+.||++|. ..| .+++.|++++|+|+|..... + +.+.+++.+.|+..
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g----~~eiv~~g~~G~lv 357 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----C----IGELVKDGKNGLLF 357 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC----C----hHHHccCCCCeEEE
Confidence 4566666 44 579999999999984 212 46899999999999985432 1 45556665556543
Q ss_pred -ChhhHHHHHHcc
Q 042754 138 -HPQSLHQVIAGM 149 (178)
Q Consensus 138 -~~~~L~~~i~~l 149 (178)
+++.|.++|.++
T Consensus 358 ~~~~~la~~i~~l 370 (371)
T PLN02275 358 SSSSELADQLLEL 370 (371)
T ss_pred CCHHHHHHHHHHh
Confidence 778888888775
No 83
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.75 E-value=0.00013 Score=59.69 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=74.2
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh--HHHHhhhc
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS--IADHLRSA 86 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~--~~~~~~~a 86 (178)
..+++.|.. +.+.+++++ ...+. +++ ++|.......... ....||.+.+++++ +..+|+.|
T Consensus 196 ~~il~~G~~~~~K~~~~li~a~---------~~~~~-~l~-ivG~g~~~~~l~~--~~~~~V~~~g~~~~~~~~~~~~~a 262 (351)
T cd03804 196 DYYLSVGRLVPYKRIDLAIEAF---------NKLGK-RLV-VIGDGPELDRLRA--KAGPNVTFLGRVSDEELRDLYARA 262 (351)
T ss_pred CEEEEEEcCccccChHHHHHHH---------HHCCC-cEE-EEECChhHHHHHh--hcCCCEEEecCCCHHHHHHHHHhC
Confidence 346677765 333444333 33344 654 4565432111111 23478999999976 88999999
Q ss_pred cEEEecC---ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---ChhhHHHHHHccCcc
Q 042754 87 SLVISHA---GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HPQSLHQVIAGMDLE 152 (178)
Q Consensus 87 dlvIsha---G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~~~L~~~i~~l~~~ 152 (178)
|++|.-. -+.++.|++++|+|+|...... ..+.+.+.+.|+.. +++.|.++|.++.++
T Consensus 263 d~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~--------~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 263 RAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG--------ALETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CEEEECCcCCCCchHHHHHHcCCCEEEeCCCC--------CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 9999532 2367899999999999865432 12234444455433 678899999888543
No 84
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.73 E-value=0.0003 Score=57.99 Aligned_cols=126 Identities=20% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccc---ccccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTK---SLGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~---~~~~~~~~nv~v~~~~~~~~ 80 (178)
.++..+++.|.. +...+++++ ..+.. .++ ++++ +|........ ........++.+.+|.+++.
T Consensus 202 ~~~~~i~~vgrl~~~K~~~~li~a~------~~l~~~~~~~-~l~i-~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 273 (372)
T cd04949 202 RKPHKIITVARLAPEKQLDQLIKAF------AKVVKQVPDA-TLDI-YGYGDEEEKLKELIEELGLEDYVFLKGYTRDLD 273 (372)
T ss_pred cCCCeEEEEEccCcccCHHHHHHHH------HHHHHhCCCc-EEEE-EEeCchHHHHHHHHHHcCCcceEEEcCCCCCHH
Confidence 345567788865 344555554 22322 233 5544 5544321110 01112345788888888999
Q ss_pred HHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHccC
Q 042754 81 DHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l~ 150 (178)
.+|+.||++|.-+ ...++.||+++|+|+|...... + ....+.+...|+. .++++|.++|.++.
T Consensus 274 ~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g----~~~~v~~~~~G~lv~~~d~~~la~~i~~ll 343 (372)
T cd04949 274 EVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---G----PSEIIEDGENGYLVPKGDIEALAEAIIELL 343 (372)
T ss_pred HHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---C----cHHHcccCCCceEeCCCcHHHHHHHHHHHH
Confidence 9999999998643 3569999999999999854331 1 2233444334443 27889999998885
No 85
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=97.72 E-value=0.00054 Score=57.25 Aligned_cols=76 Identities=14% Similarity=0.144 Sum_probs=54.6
Q ss_pred cceEEEEeCh--hhHHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---
Q 042754 67 LMAVDYFTFS--SSIADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA--- 137 (178)
Q Consensus 67 ~~nv~v~~~~--~~~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~--- 137 (178)
..++.+.+++ +++..+|+.||++|.- +.+.++.|++++|+|+|+..... ..+.+.+...++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~--------~~e~i~~~~~g~~~~~~ 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG--------LPVAVADGETGLLVDGH 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC--------cHhhhccCCceEECCCC
Confidence 3578888887 4588999999998853 33478999999999999865431 22334444455532
Q ss_pred ChhhHHHHHHccC
Q 042754 138 HPQSLHQVIAGMD 150 (178)
Q Consensus 138 ~~~~L~~~i~~l~ 150 (178)
+++.+.++|.++.
T Consensus 354 d~~~la~~i~~~l 366 (405)
T TIGR03449 354 DPADWADALARLL 366 (405)
T ss_pred CHHHHHHHHHHHH
Confidence 7788888888774
No 86
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.64 E-value=0.00011 Score=59.40 Aligned_cols=124 Identities=19% Similarity=0.252 Sum_probs=73.7
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC--CCCeEEEEEeCCCccccc-cc---ccCCcceEEEEeCh--hh
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR--GYTHLLIQMGRGTYVPTK-SL---GEDGLMAVDYFTFS--SS 78 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~--~~~~vvv~~G~~~~~~~~-~~---~~~~~~nv~v~~~~--~~ 78 (178)
.+.+++..|+. +...+.+.+ ..+... ++ ++ +++|........ .. ......++++.+++ ++
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~------~~~~~~~~~~-~l-~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~ 265 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAF------ARLPAKGPDP-KL-VIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEE 265 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHH------HHHHHhcCCC-CE-EEecCCccccHHHHHHHHHcCCCCeEEECCCCChhH
Confidence 34567777765 344455554 333332 23 44 455654321111 00 11235689999998 45
Q ss_pred HHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccC
Q 042754 79 IADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMD 150 (178)
Q Consensus 79 ~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~ 150 (178)
+..+++.||++|.- +..++++|++++|+|+|+-.... ..+.+.+.|..+. .+.+++.++|.++.
T Consensus 266 ~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~--------~~e~~~~~~~~~~~~~~~~~~~~i~~l~ 334 (365)
T cd03809 266 LAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISS--------LPEVAGDAALYFDPLDPEALAAAIERLL 334 (365)
T ss_pred HHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCC--------ccceecCceeeeCCCCHHHHHHHHHHHh
Confidence 88999999998854 23468999999999999744321 1112233444332 36888999988864
No 87
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.61 E-value=0.00085 Score=56.23 Aligned_cols=127 Identities=15% Similarity=0.136 Sum_probs=74.2
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeCh--hhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFS--SSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~--~~~~ 80 (178)
+.+.++++.|.. |...+++++ ..+.+....-.+++.|....... . ........++...+++ +++.
T Consensus 191 ~~~~~i~~~grl~~~Kg~~~li~a~------~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~ 264 (398)
T cd03796 191 NDKITIVVISRLVYRKGIDLLVGII------PEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVR 264 (398)
T ss_pred CCceEEEEEeccchhcCHHHHHHHH------HHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHH
Confidence 355677788864 445555554 23332211134445675432111 1 0001123568888986 4699
Q ss_pred HHhhhccEEEecC---C-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccC
Q 042754 81 DHLRSASLVISHA---G-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIsha---G-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~ 150 (178)
.+++.||++|.-+ | ..++.||+++|+|+|+-+... ..+.+.+.+..+. .+++.+.+++.++.
T Consensus 265 ~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg--------~~e~i~~~~~~~~~~~~~~l~~~l~~~l 331 (398)
T cd03796 265 DVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG--------IPEVLPPDMILLAEPDVESIVRKLEEAI 331 (398)
T ss_pred HHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCC--------chhheeCCceeecCCCHHHHHHHHHHHH
Confidence 9999999998643 1 259999999999999755432 1223333222222 37788888888774
No 88
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.59 E-value=0.00082 Score=56.91 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=76.6
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--------CCCCeEEEEEeCCCcccccccc--cCCcceEEEE-e
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--------RGYTHLLIQMGRGTYVPTKSLG--EDGLMAVDYF-T 74 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--------~~~~~vvv~~G~~~~~~~~~~~--~~~~~nv~v~-~ 74 (178)
+++.++++.|.. +.+.+++++ ..+.. .++ + +++.|........... ...-.++..+ +
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~------~~l~~~~~~~~~~~~i-~-l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g 301 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDAL------VAYEKSAATGPKLPKL-L-CIITGKGPLKEKYLERIKELKLKKVTIRTP 301 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHH------HHHHHhhcccccCCCE-E-EEEEecCccHHHHHHHHHHcCCCcEEEEcC
Confidence 456677777754 556666665 22221 123 3 4556765421111000 0111356655 4
Q ss_pred Ch--hhHHHHhhhccEEEe----cCC---hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHH
Q 042754 75 FS--SSIADHLRSASLVIS----HAG---SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQ 144 (178)
Q Consensus 75 ~~--~~~~~~~~~adlvIs----haG---~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~ 144 (178)
|+ +++.++|+.||++|+ ..| ..++.|++++|+|+|..... ...+.+++.+.|+. .++++|.+
T Consensus 302 ~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~--------~~~eiv~~~~~G~lv~d~~~la~ 373 (415)
T cd03816 302 WLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK--------CIDELVKHGENGLVFGDSEELAE 373 (415)
T ss_pred cCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC--------CHHHHhcCCCCEEEECCHHHHHH
Confidence 65 469999999999984 222 56899999999999974332 23455656555654 48899999
Q ss_pred HHHccCcc
Q 042754 145 VIAGMDLE 152 (178)
Q Consensus 145 ~i~~l~~~ 152 (178)
+|.++..+
T Consensus 374 ~i~~ll~~ 381 (415)
T cd03816 374 QLIDLLSN 381 (415)
T ss_pred HHHHHHhc
Confidence 99888543
No 89
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.43 E-value=0.0024 Score=52.84 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=52.6
Q ss_pred cceEEEEeCh----hhHHHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-e
Q 042754 67 LMAVDYFTFS----SSIADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-A 137 (178)
Q Consensus 67 ~~nv~v~~~~----~~~~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~ 137 (178)
..++.+.++. .++..+++.||+++.-+- ..++.|++++|+|+|+-.... ..+.+.+...++. -
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~--------~~~~i~~~~~g~~~~ 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG--------IPLQIEDGETGFLVD 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC--------chhhcccCCceEEeC
Confidence 3467777775 458899999999997542 469999999999999754331 1233444444543 3
Q ss_pred ChhhHHHHHHccC
Q 042754 138 HPQSLHQVIAGMD 150 (178)
Q Consensus 138 ~~~~L~~~i~~l~ 150 (178)
+++.+..+|.++.
T Consensus 323 ~~~~~a~~i~~ll 335 (372)
T cd03792 323 TVEEAAVRILYLL 335 (372)
T ss_pred CcHHHHHHHHHHH
Confidence 6677777777764
No 90
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.43 E-value=0.0014 Score=55.12 Aligned_cols=126 Identities=16% Similarity=0.245 Sum_probs=74.1
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCcccccccc--cCCcceEEEEeChh--hHHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTKSLG--EDGLMAVDYFTFSS--SIAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~~~~--~~~~~nv~v~~~~~--~~~~ 81 (178)
.+.+++..|+. |...+++++ ..+... ++ ++ ++.|........... .....||...+|++ ++.+
T Consensus 228 ~~~~i~~~G~l~~~kg~~~li~a~------~~l~~~~~~-~l-~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~ 299 (412)
T PRK10307 228 GKKIVLYSGNIGEKQGLELVIDAA------RRLRDRPDL-IF-VICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPA 299 (412)
T ss_pred CCEEEEEcCccccccCHHHHHHHH------HHhccCCCe-EE-EEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHH
Confidence 45678888875 455565554 233322 33 44 467765421111000 01124788889874 5889
Q ss_pred HhhhccEEEe--cCC------hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHccC
Q 042754 82 HLRSASLVIS--HAG------SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGMD 150 (178)
Q Consensus 82 ~~~~adlvIs--haG------~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l~ 150 (178)
+|+.||+.|. +.+ .+.+.|++++|+|+|...... . ...+.+.+.|+.+. .++++|.++|.++.
T Consensus 300 ~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g---~---~~~~~i~~~G~~~~~~d~~~la~~i~~l~ 371 (412)
T PRK10307 300 LLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPG---T---ELGQLVEGIGVCVEPESVEALVAAIAALA 371 (412)
T ss_pred HHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCC---c---hHHHHHhCCcEEeCCCCHHHHHHHHHHHH
Confidence 9999998653 322 234789999999999866431 1 11222333444332 37889999998874
No 91
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.42 E-value=0.0022 Score=52.99 Aligned_cols=79 Identities=8% Similarity=0.053 Sum_probs=54.1
Q ss_pred CcceEEEEeChhh----HHHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-
Q 042754 66 GLMAVDYFTFSSS----IADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC- 136 (178)
Q Consensus 66 ~~~nv~v~~~~~~----~~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~- 136 (178)
...+|.+.+|.++ +.++++.||++|..+- ..++.|++++|+|+|...... + ..+.+.+...|+.
T Consensus 234 l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~---g----~~eiv~~~~~G~lv 306 (359)
T PRK09922 234 IEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMS---G----PRDIIKPGLNGELY 306 (359)
T ss_pred CCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCC---C----hHHHccCCCceEEE
Confidence 3468999998754 5666778999996432 689999999999999753121 1 1123433333433
Q ss_pred --eChhhHHHHHHccCc
Q 042754 137 --AHPQSLHQVIAGMDL 151 (178)
Q Consensus 137 --~~~~~L~~~i~~l~~ 151 (178)
.+++++.++|.++..
T Consensus 307 ~~~d~~~la~~i~~l~~ 323 (359)
T PRK09922 307 TPGNIDEFVGKLNKVIS 323 (359)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 378999999998853
No 92
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.37 E-value=0.003 Score=53.39 Aligned_cols=126 Identities=16% Similarity=0.214 Sum_probs=74.4
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC--CCCeE-EEEEeCCCcccc-c--ccccCCcceEEEEeChh--
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTRR--GYTHL-LIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSS-- 77 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~--~~~~v-vv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~-- 77 (178)
+.+..+++.|.. |...+++++ ..+.+. +. ++ ++..|....... . ........++...+|++
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~------~~l~~~~p~~-~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~ 300 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKAL------AALAKARPSI-KIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNS 300 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHH------HHHHHhCCCc-eEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChH
Confidence 456677888864 455566555 233322 12 32 234565432111 1 00011235788899986
Q ss_pred hHHHHhhh--ccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe----ChhhHHHHHH
Q 042754 78 SIADHLRS--ASLVISHAG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA----HPQSLHQVIA 147 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~----~~~~L~~~i~ 147 (178)
++..++.. ||++|..+- ..+++||+++|+|+|.-... + ..+.+.+.+.|+.. +++++.++|.
T Consensus 301 e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vg----g----~~e~i~~~~~G~l~~~~~~~~~la~~I~ 372 (407)
T cd04946 301 EVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVG----G----TPEIVDNGGNGLLLSKDPTPNELVSSLS 372 (407)
T ss_pred HHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCC----C----cHHHhcCCCcEEEeCCCCCHHHHHHHHH
Confidence 47788865 677775542 57899999999999973322 2 34455554345432 6788999998
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
++.
T Consensus 373 ~ll 375 (407)
T cd04946 373 KFI 375 (407)
T ss_pred HHH
Confidence 885
No 93
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.35 E-value=0.00096 Score=50.08 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=40.0
Q ss_pred CcceEEEEeCh---hhHHHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCC
Q 042754 66 GLMAVDYFTFS---SSIADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 66 ~~~nv~v~~~~---~~~~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~ 114 (178)
...|+++.+++ +.+..+++.||++|+-.. .++++|++++|+|+|.-+.+
T Consensus 159 ~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~ 214 (229)
T cd01635 159 LLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATDVG 214 (229)
T ss_pred CcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcCCC
Confidence 34689999884 446666677999999886 79999999999999987665
No 94
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.34 E-value=0.0047 Score=53.85 Aligned_cols=125 Identities=15% Similarity=0.079 Sum_probs=75.3
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChhhHH
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSSSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~~~~ 80 (178)
.++..+++.|.. |...+++++ ..+.+ .++ ++ ++.|.+..... . ........+|...++. ++.
T Consensus 317 r~~~~il~vGrl~~~Kg~~~li~A~------~~l~~~~p~~-~l-~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~-~~~ 387 (500)
T TIGR02918 317 RKPFSIITASRLAKEKHIDWLVKAV------VKAKKSVPEL-TF-DIYGEGGEKQKLQKIINENQAQDYIHLKGHR-NLS 387 (500)
T ss_pred cCCeEEEEEeccccccCHHHHHHHH------HHHHhhCCCe-EE-EEEECchhHHHHHHHHHHcCCCCeEEEcCCC-CHH
Confidence 345678888975 455666665 22222 233 44 34576543111 1 0111223578888987 589
Q ss_pred HHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeC-----------hhhHHHH
Q 042754 81 DHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAH-----------PQSLHQV 145 (178)
Q Consensus 81 ~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~-----------~~~L~~~ 145 (178)
++++.||++|.-+ -+.+++||+++|+|+|.....+. +.+.+++-.-|+... ++.|+++
T Consensus 388 ~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~G-------~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~ 460 (500)
T TIGR02918 388 EVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIGFDVNYG-------NPTFIEDNKNGYLIPIDEEEDDEDQIITALAEK 460 (500)
T ss_pred HHHHhCCEEEEcCccccccHHHHHHHHhCCCEEEecCCCC-------CHHHccCCCCEEEEeCCccccchhHHHHHHHHH
Confidence 9999999999743 35799999999999998554311 223333332343321 6778888
Q ss_pred HHccC
Q 042754 146 IAGMD 150 (178)
Q Consensus 146 i~~l~ 150 (178)
|.++.
T Consensus 461 I~~ll 465 (500)
T TIGR02918 461 IVEYF 465 (500)
T ss_pred HHHHh
Confidence 87765
No 95
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.34 E-value=0.0045 Score=51.75 Aligned_cols=90 Identities=20% Similarity=0.277 Sum_probs=61.8
Q ss_pred ceEEEEeCh--hhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-E-E-eChhhH
Q 042754 68 MAVDYFTFS--SSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-Y-C-AHPQSL 142 (178)
Q Consensus 68 ~nv~v~~~~--~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~-~-~-~~~~~L 142 (178)
+++.+.+.+ .++..+|+.|+++||-++++ +.|+.++|+|.|.+-. .|+-. +.|.. + + .+++++
T Consensus 262 ~~v~l~~~l~~~~~l~Ll~~a~~vitdSSgg-i~EA~~lg~Pvv~l~~------R~e~~-----~~g~nvl~vg~~~~~I 329 (365)
T TIGR03568 262 PNFRLFKSLGQERYLSLLKNADAVIGNSSSG-IIEAPSFGVPTINIGT------RQKGR-----LRADSVIDVDPDKEEI 329 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCCEEEEcChhH-HHhhhhcCCCEEeecC------Cchhh-----hhcCeEEEeCCCHHHH
Confidence 578877643 36889999999999988644 4999999999997631 23221 33433 3 2 378889
Q ss_pred HHHHHccCcc--------cCCCCCCCChh-HHHHHH
Q 042754 143 HQVIAGMDLE--------SLLPYQPGDAT-PVAKLI 169 (178)
Q Consensus 143 ~~~i~~l~~~--------~~~~~~~~~~~-~i~~~i 169 (178)
.+++.+++.. ...+|.+++++ +|+++|
T Consensus 330 ~~a~~~~~~~~~~~~~~~~~~pygdg~as~rI~~~l 365 (365)
T TIGR03568 330 VKAIEKLLDPAFKKSLKNVKNPYGDGNSSERIIEIL 365 (365)
T ss_pred HHHHHHHhChHHHHHHhhCCCCCCCChHHHHHHHhC
Confidence 9988886421 13467777777 887753
No 96
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.34 E-value=0.0023 Score=55.14 Aligned_cols=124 Identities=13% Similarity=0.114 Sum_probs=75.1
Q ss_pred CCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc--c-----ccccCCcceEEEEeCh
Q 042754 10 LKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT--K-----SLGEDGLMAVDYFTFS 76 (178)
Q Consensus 10 ~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~--~-----~~~~~~~~nv~v~~~~ 76 (178)
+.+.+++..|.. |...+++++ ..+.+ .++ ++ ++.|.....+. . ........+|+..+ .
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~------~~l~~~~p~~-~l-~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~ 361 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAA------AIVRKKIPDA-EG-WVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-F 361 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHH------HHHHHhCCCe-EE-EEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-C
Confidence 345677888875 455565555 23332 233 44 45666532111 0 00012346888888 4
Q ss_pred hhHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC-----C-CEEE---eChhhHH
Q 042754 77 SSIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR-----K-HLYC---AHPQSLH 143 (178)
Q Consensus 77 ~~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~-----G-~~~~---~~~~~L~ 143 (178)
.++.++|+.||++|.-+ -..++.|++++|+|+|.-... + ..+.+.+. | .|+. .+++.+.
T Consensus 362 ~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~----~~elv~~~~~~~~g~~G~lv~~~d~~~la 433 (475)
T cd03813 362 QNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----S----CRELIEGADDEALGPAGEVVPPADPEALA 433 (475)
T ss_pred ccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----C----hHHHhcCCcccccCCceEEECCCCHHHHH
Confidence 56999999999998653 347999999999999973221 1 23334441 1 3433 3788999
Q ss_pred HHHHccC
Q 042754 144 QVIAGMD 150 (178)
Q Consensus 144 ~~i~~l~ 150 (178)
++|.++.
T Consensus 434 ~ai~~ll 440 (475)
T cd03813 434 RAILRLL 440 (475)
T ss_pred HHHHHHh
Confidence 9998885
No 97
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.33 E-value=0.0034 Score=51.93 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=53.6
Q ss_pred cceEEEEeChhh--HHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eC
Q 042754 67 LMAVDYFTFSSS--IADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AH 138 (178)
Q Consensus 67 ~~nv~v~~~~~~--~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~~ 138 (178)
..+|.+.+++++ +..+|..||+++... -+.++.|++++|+|.|..-.+ + ..+.+.+.+.++. .+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~----~~e~i~~~~~g~~~~~~ 350 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSG----G----PLETVVDGETGFLCEPT 350 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCC----C----cHHHhccCCceEEeCCC
Confidence 468999999864 678999999998532 236889999999999985432 1 1223444334443 47
Q ss_pred hhhHHHHHHccC
Q 042754 139 PQSLHQVIAGMD 150 (178)
Q Consensus 139 ~~~L~~~i~~l~ 150 (178)
++++.++|.++.
T Consensus 351 ~~~~a~~i~~l~ 362 (392)
T cd03805 351 PEEFAEAMLKLA 362 (392)
T ss_pred HHHHHHHHHHHH
Confidence 888888888875
No 98
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.32 E-value=0.022 Score=46.74 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=86.0
Q ss_pred CCCcEEEEEeCCc--cH----H---HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc---cccCCcceEEEEeCh
Q 042754 9 SLKRIVFVTVGTT--CF----D---ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS---LGEDGLMAVDYFTFS 76 (178)
Q Consensus 9 ~~~~~ilVt~Gs~--~~----~---~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~---~~~~~~~nv~v~~~~ 76 (178)
..+|.+.|..|+. .+ . .+.+.+ ...+...+. .+.+++.......... ........+.+++-.
T Consensus 144 l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l-----~~~~~~~~~-~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~ 217 (311)
T PF06258_consen 144 LPRPRVAVLIGGDSKHYRWDEEDAERLLDQL-----AALAAAYGG-SLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGT 217 (311)
T ss_pred CCCCeEEEEECcCCCCcccCHHHHHHHHHHH-----HHHHHhCCC-eEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCC
Confidence 3467777776643 22 2 233332 222334453 7888888766432211 111122445455443
Q ss_pred h--hHHHHhhhccEEEecC-ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccCccc
Q 042754 77 S--SIADHLRSASLVISHA-GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLES 153 (178)
Q Consensus 77 ~--~~~~~~~~adlvIsha-G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~~~~ 153 (178)
+ .+..+|+.||.||.-+ ..+-++||++.|+|+.+++.+. ..+-=....+.|.+.|+....+... .+ ..
T Consensus 218 ~~nPy~~~La~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~~~~------~~--~~ 288 (311)
T PF06258_consen 218 GENPYLGFLAAADAIVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFTGWR------DL--EQ 288 (311)
T ss_pred CCCcHHHHHHhCCEEEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECCCcc------cc--cc
Confidence 2 2779999999876555 4566899999999999999875 2221123556677788875432110 00 11
Q ss_pred CCCCCCCChh-HHHHHHHHhc
Q 042754 154 LLPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 154 ~~~~~~~~~~-~i~~~i~~~~ 173 (178)
..+|.+-+.+ ++++.|.+.+
T Consensus 289 ~~~~~pl~et~r~A~~i~~r~ 309 (311)
T PF06258_consen 289 WTPYEPLDETDRVAAEIRERL 309 (311)
T ss_pred cccCCCccHHHHHHHHHHHHh
Confidence 4446666766 9998887653
No 99
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=97.32 E-value=0.0056 Score=50.57 Aligned_cols=74 Identities=11% Similarity=0.201 Sum_probs=50.4
Q ss_pred eEEEE-eCh--hhHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C
Q 042754 69 AVDYF-TFS--SSIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---H 138 (178)
Q Consensus 69 nv~v~-~~~--~~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~ 138 (178)
++..+ +++ +++..+|+.||++|.-+ .+.+++|++++|+|+|+-... + ..+.+++.+.|+.. +
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~----~~e~i~~~~~G~~~~~~~ 332 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----G----IPEVVVDGETGFLVPPDN 332 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----C----HHHHhhCCCceEEcCCCC
Confidence 35544 343 46999999999999743 246889999999999975432 1 34445554455543 4
Q ss_pred h------hhHHHHHHccC
Q 042754 139 P------QSLHQVIAGMD 150 (178)
Q Consensus 139 ~------~~L~~~i~~l~ 150 (178)
+ +.|.++|.++.
T Consensus 333 ~~~~~~~~~l~~~i~~l~ 350 (388)
T TIGR02149 333 SDADGFQAELAKAINILL 350 (388)
T ss_pred CcccchHHHHHHHHHHHH
Confidence 4 77888888774
No 100
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.32 E-value=0.0031 Score=52.77 Aligned_cols=75 Identities=12% Similarity=0.107 Sum_probs=54.0
Q ss_pred ceEEEEeChh--hHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eC
Q 042754 68 MAVDYFTFSS--SIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AH 138 (178)
Q Consensus 68 ~nv~v~~~~~--~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~ 138 (178)
.+|.+.++++ ++..+|+.||++|.-+ -..++.|++++|+|+|.-... ...+.+.+...++. .+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~--------g~~e~i~~~~~G~lv~~~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA--------PVREVITDGENGLLVDFFD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC--------CchhhcccCCceEEcCCCC
Confidence 5789899985 5889999999998522 124899999999999974332 23344444334443 37
Q ss_pred hhhHHHHHHccC
Q 042754 139 PQSLHQVIAGMD 150 (178)
Q Consensus 139 ~~~L~~~i~~l~ 150 (178)
++.|.++|.++.
T Consensus 353 ~~~la~~i~~ll 364 (396)
T cd03818 353 PDALAAAVIELL 364 (396)
T ss_pred HHHHHHHHHHHH
Confidence 899999998875
No 101
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.30 E-value=0.0029 Score=50.86 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=53.4
Q ss_pred cceEEEEeChhh--HHHHhhhccEEEec-----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eC
Q 042754 67 LMAVDYFTFSSS--IADHLRSASLVISH-----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AH 138 (178)
Q Consensus 67 ~~nv~v~~~~~~--~~~~~~~adlvIsh-----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~ 138 (178)
..++.+.+|+++ +..+|+.||+++.- +-..++.|++++|+|+|.-.... +.+.+.+...++. ..
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~--------~~e~i~~~~~g~l~~~ 294 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA--------VPEVVEDGVTGFLVDS 294 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC--------chhheeCCCcEEEeCC
Confidence 468999999864 67899999999853 22468999999999999755431 2233333324443 34
Q ss_pred hhhHHHHHHccC
Q 042754 139 PQSLHQVIAGMD 150 (178)
Q Consensus 139 ~~~L~~~i~~l~ 150 (178)
++++.++|.++.
T Consensus 295 ~~~l~~~l~~l~ 306 (335)
T cd03802 295 VEELAAAVARAD 306 (335)
T ss_pred HHHHHHHHHHHh
Confidence 888999888773
No 102
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=97.26 E-value=0.0018 Score=54.02 Aligned_cols=135 Identities=13% Similarity=0.148 Sum_probs=86.7
Q ss_pred CCCCCcEEEEEeCCccHH--HHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccccc---ccCCcceEEEEeChhhH
Q 042754 7 SVSLKRIVFVTVGTTCFD--ALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKSL---GEDGLMAVDYFTFSSSI 79 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~~~--~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~~---~~~~~~nv~v~~~~~~~ 79 (178)
.+.+++++++.-||-+.+ .+...+ .++...+.. .+. ++++-+-+..+...... ......++.+.+. +-
T Consensus 184 ~~~~~~~lalLPGSR~sEI~rl~~~f--~~a~~~l~~~~~~~-~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 258 (381)
T COG0763 184 IDADEKTLALLPGSRRSEIRRLLPPF--VQAAQELKARYPDL-KFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG--EK 258 (381)
T ss_pred CCCCCCeEEEecCCcHHHHHHHHHHH--HHHHHHHHhhCCCc-eEEEecCcHHHHHHHHHHhhccccCceEEecCc--hH
Confidence 345788999999997543 444444 233444542 344 78877766553322211 1000123333333 24
Q ss_pred HHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-----------------EeChhhH
Q 042754 80 ADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY-----------------CAHPQSL 142 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~-----------------~~~~~~L 142 (178)
.+.|.+||+++..+| +.+.|+..+|+|+|+.-.. +.=-+..|+++.+..+.- ..+++.|
T Consensus 259 ~~a~~~aD~al~aSG-T~tLE~aL~g~P~Vv~Yk~---~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~l 334 (381)
T COG0763 259 RKAFAAADAALAASG-TATLEAALAGTPMVVAYKV---KPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENL 334 (381)
T ss_pred HHHHHHhhHHHHhcc-HHHHHHHHhCCCEEEEEec---cHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHH
Confidence 579999999999999 6788999999999987554 233567888888876652 1368888
Q ss_pred HHHHHccC
Q 042754 143 HQVIAGMD 150 (178)
Q Consensus 143 ~~~i~~l~ 150 (178)
.+++..++
T Consensus 335 a~~l~~ll 342 (381)
T COG0763 335 ARALEELL 342 (381)
T ss_pred HHHHHHHh
Confidence 88888775
No 103
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.23 E-value=0.0066 Score=54.91 Aligned_cols=123 Identities=13% Similarity=0.121 Sum_probs=73.0
Q ss_pred cEEEEEeCCc----cHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCcccc-c--ccccCCcceEEEEeChhhHHHHh
Q 042754 12 RIVFVTVGTT----CFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYFTFSSSIADHL 83 (178)
Q Consensus 12 ~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~~~~~~~~~~~ 83 (178)
..++++.|.. |+..+++++. ..+... ++ + ++++|....... . ........+|.+.+|.+++..+|
T Consensus 517 ~~vIg~VGRL~~~KG~~~LI~A~a-----~l~~~~p~~-~-LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll 589 (694)
T PRK15179 517 RFTVGTVMRVDDNKRPFLWVEAAQ-----RFAASHPKV-R-FIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWL 589 (694)
T ss_pred CeEEEEEEeCCccCCHHHHHHHHH-----HHHHHCcCe-E-EEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHH
Confidence 4466677753 5566666651 112222 33 4 455665432111 1 01112346799999999999999
Q ss_pred hhccEEEec---CC-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---C--hhhHHHHHHcc
Q 042754 84 RSASLVISH---AG-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---H--PQSLHQVIAGM 149 (178)
Q Consensus 84 ~~adlvIsh---aG-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~--~~~L~~~i~~l 149 (178)
+.||++|.- -| .+++.|++++|+|+|.-... + ..+.+.+...|+.. + ++.+.+++.++
T Consensus 590 ~aaDv~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~l 656 (694)
T PRK15179 590 TQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----G----AGEAVQEGVTGLTLPADTVTAPDVAEALARI 656 (694)
T ss_pred HhcCEEEeccccccchHHHHHHHHcCCeEEEECCC----C----hHHHccCCCCEEEeCCCCCChHHHHHHHHHH
Confidence 999999863 22 57999999999999975432 1 33344444345433 2 34566666554
No 104
>PHA01633 putative glycosyl transferase group 1
Probab=97.21 E-value=0.0041 Score=51.49 Aligned_cols=84 Identities=13% Similarity=0.136 Sum_probs=55.2
Q ss_pred cceEEEEe---Ch--hhHHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCC---CCCCch-----HHHHHHHHH
Q 042754 67 LMAVDYFT---FS--SSIADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNE---DLMDNH-----QSELAEELA 129 (178)
Q Consensus 67 ~~nv~v~~---~~--~~~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~---~~~~~~-----Q~~nA~~l~ 129 (178)
..+++..+ +. .++.++++.||++|.- +=+.++.||+++|+|+|.--.+ +..++. +..++..+.
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~ 279 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYY 279 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhc
Confidence 35777764 32 4689999999999974 3357899999999998874222 111110 122343344
Q ss_pred --hCCCEEE---eChhhHHHHHHccC
Q 042754 130 --ARKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 130 --~~G~~~~---~~~~~L~~~i~~l~ 150 (178)
+.|.++. .+++.+.++|..+.
T Consensus 280 ~~~~g~g~~~~~~d~~~la~ai~~~~ 305 (335)
T PHA01633 280 DKEHGQKWKIHKFQIEDMANAIILAF 305 (335)
T ss_pred CcccCceeeecCCCHHHHHHHHHHHH
Confidence 3566664 48999999998773
No 105
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.12 E-value=0.0043 Score=52.86 Aligned_cols=75 Identities=12% Similarity=0.173 Sum_probs=52.3
Q ss_pred ceEEEEeCh--hhHHHHhhhc----cEEEecC---C-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-
Q 042754 68 MAVDYFTFS--SSIADHLRSA----SLVISHA---G-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC- 136 (178)
Q Consensus 68 ~nv~v~~~~--~~~~~~~~~a----dlvIsha---G-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~- 136 (178)
.+|...+++ +++..+|+.| |++|.-+ | ..++.|++++|+|+|+-... + ..+.+.+...|+.
T Consensus 317 ~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g----~~eiv~~~~~G~lv 388 (439)
T TIGR02472 317 GKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDG----G----PRDIIANCRNGLLV 388 (439)
T ss_pred ceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCC----C----cHHHhcCCCcEEEe
Confidence 467777764 4688999877 8988643 2 47999999999999975432 1 3334444334443
Q ss_pred --eChhhHHHHHHccC
Q 042754 137 --AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 --~~~~~L~~~i~~l~ 150 (178)
.+++.|.++|.++.
T Consensus 389 ~~~d~~~la~~i~~ll 404 (439)
T TIGR02472 389 DVLDLEAIASALEDAL 404 (439)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 37899999998874
No 106
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.11 E-value=0.0037 Score=52.08 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=51.4
Q ss_pred cceEEEEeCh--hhHHHHhhhccEEEec--------CC-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 67 LMAVDYFTFS--SSIADHLRSASLVISH--------AG-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 67 ~~nv~v~~~~--~~~~~~~~~adlvIsh--------aG-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
..||+..++. +++..+++.||+.|.- ++ .+.+.|++++|+|+|..+.+. ..+ ..+ |..+
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~--------~~~-~~~-~~~~ 322 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPE--------VRR-YED-EVVL 322 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHH--------HHh-hcC-cEEE
Confidence 3689999998 4699999999998852 22 256999999999999755321 111 111 2223
Q ss_pred E-eChhhHHHHHHcc
Q 042754 136 C-AHPQSLHQVIAGM 149 (178)
Q Consensus 136 ~-~~~~~L~~~i~~l 149 (178)
. .+++++.++|.++
T Consensus 323 ~~~d~~~~~~ai~~~ 337 (373)
T cd04950 323 IADDPEEFVAAIEKA 337 (373)
T ss_pred eCCCHHHHHHHHHHH
Confidence 3 3789999999885
No 107
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.05 E-value=0.02 Score=47.95 Aligned_cols=153 Identities=13% Similarity=0.189 Sum_probs=93.3
Q ss_pred CCCCcEEEEEeCC---c--cHHHHHHHhccHHHHHHHHhC-CCCeEEEEEeCCCcccccc-cccCCcceEEEEeCh--hh
Q 042754 8 VSLKRIVFVTVGT---T--CFDALVKAVDTLEVKQELTRR-GYTHLLIQMGRGTYVPTKS-LGEDGLMAVDYFTFS--SS 78 (178)
Q Consensus 8 ~~~~~~ilVt~Gs---~--~~~~l~~~~~~~~~~~~l~~~-~~~~vvv~~G~~~~~~~~~-~~~~~~~nv~v~~~~--~~ 78 (178)
..+++.+|||.=- . ++..+.+.+ .+.+... ++ .++.-+-.+....... .......++++++-. -+
T Consensus 201 ~~~~~~iLvT~HRreN~~~~~~~i~~al-----~~i~~~~~~~-~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~ 274 (383)
T COG0381 201 DKDKKYILVTAHRRENVGEPLEEICEAL-----REIAEEYPDV-IVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLD 274 (383)
T ss_pred cccCcEEEEEcchhhcccccHHHHHHHH-----HHHHHhCCCc-eEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHH
Confidence 3456788998752 2 455555554 2222222 33 4444443332111111 001123467776533 25
Q ss_pred HHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--eChhhHHHHHHccCc-----
Q 042754 79 IADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--AHPQSLHQVIAGMDL----- 151 (178)
Q Consensus 79 ~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~~~~~L~~~i~~l~~----- 151 (178)
+..+|..|-+++|-+| |-.-||..+|+|++++=.. .++.+ ..+.|.... .+.+.+.+++.+++.
T Consensus 275 f~~L~~~a~~iltDSG-giqEEAp~lg~Pvl~lR~~----TERPE----~v~agt~~lvg~~~~~i~~~~~~ll~~~~~~ 345 (383)
T COG0381 275 FHNLMKNAFLILTDSG-GIQEEAPSLGKPVLVLRDT----TERPE----GVEAGTNILVGTDEENILDAATELLEDEEFY 345 (383)
T ss_pred HHHHHHhceEEEecCC-chhhhHHhcCCcEEeeccC----CCCcc----ceecCceEEeCccHHHHHHHHHHHhhChHHH
Confidence 8899999999999999 6689999999999987433 23443 234554443 367888888887752
Q ss_pred ----ccCCCCCCCChh-HHHHHHHHhcCC
Q 042754 152 ----ESLLPYQPGDAT-PVAKLINRFLGF 175 (178)
Q Consensus 152 ----~~~~~~~~~~~~-~i~~~i~~~~~~ 175 (178)
..-.+|....++ +|++.|....+.
T Consensus 346 ~~m~~~~npYgdg~as~rIv~~l~~~~~~ 374 (383)
T COG0381 346 ERMSNAKNPYGDGNASERIVEILLNYFDS 374 (383)
T ss_pred HHHhcccCCCcCcchHHHHHHHHHHHhhh
Confidence 334578888777 999999877653
No 108
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.05 E-value=0.0089 Score=52.64 Aligned_cols=72 Identities=17% Similarity=0.145 Sum_probs=50.7
Q ss_pred cceEEEEeChhhHHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe---Ch
Q 042754 67 LMAVDYFTFSSSIADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA---HP 139 (178)
Q Consensus 67 ~~nv~v~~~~~~~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~---~~ 139 (178)
..+|.+.+|.+++..+|+.||++|.- +-.+++.|++++|+|+|.-... .+.+.+.+...|+.. ++
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG--------G~~EiV~dG~nG~LVp~~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPVISTPAG--------GSAECFIEGVSGFILDDAQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCEEEeCCC--------CcHHHcccCCcEEEECCCCh
Confidence 46899999999999999999999963 2357999999999999975432 134445454455543 33
Q ss_pred hhHHHHH
Q 042754 140 QSLHQVI 146 (178)
Q Consensus 140 ~~L~~~i 146 (178)
+.+.+++
T Consensus 526 ~aLa~ai 532 (578)
T PRK15490 526 VNLDQAC 532 (578)
T ss_pred hhHHHHH
Confidence 4444443
No 109
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.87 E-value=0.0063 Score=49.38 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=49.9
Q ss_pred cceEEEEeChhh--HHHHhhhccEEEecCCh-----HHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeCh
Q 042754 67 LMAVDYFTFSSS--IADHLRSASLVISHAGS-----GSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHP 139 (178)
Q Consensus 67 ~~nv~v~~~~~~--~~~~~~~adlvIshaG~-----~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~ 139 (178)
..+|++.+++++ +..++..||+++.+.-. .++.|++++|+|+|+..... +.+.+.+.|..+. ..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~--------~~e~~~~~g~~~~-~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF--------NREVLGDKAIYFK-VG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCc--------cceeecCCeeEec-Cc
Confidence 468999999854 67899999999876533 58999999999999765432 1112223333332 22
Q ss_pred hhHHHHHHccC
Q 042754 140 QSLHQVIAGMD 150 (178)
Q Consensus 140 ~~L~~~i~~l~ 150 (178)
+.+.+++.++.
T Consensus 318 ~~l~~~i~~l~ 328 (363)
T cd04955 318 DDLASLLEELE 328 (363)
T ss_pred hHHHHHHHHHH
Confidence 22888887764
No 110
>PLN02846 digalactosyldiacylglycerol synthase
Probab=96.77 E-value=0.027 Score=48.66 Aligned_cols=122 Identities=11% Similarity=0.084 Sum_probs=71.6
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCcccc-cccccCCcceEEEEeChhhHHHHhhh
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPT-KSLGEDGLMAVDYFTFSSSIADHLRS 85 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~-~~~~~~~~~nv~v~~~~~~~~~~~~~ 85 (178)
.++++.|-. +...+++++ ..+.. .++ + +++.|.+..... +......+.++.++....+-.++++.
T Consensus 229 ~~~l~vGRL~~eK~~~~Li~a~------~~l~~~~~~~-~-l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~~~~~~~~ 300 (462)
T PLN02846 229 KGAYYIGKMVWSKGYKELLKLL------HKHQKELSGL-E-VDLYGSGEDSDEVKAAAEKLELDVRVYPGRDHADPLFHD 300 (462)
T ss_pred eEEEEEecCcccCCHHHHHHHH------HHHHhhCCCe-E-EEEECCCccHHHHHHHHHhcCCcEEEECCCCCHHHHHHh
Confidence 367888864 566676665 22322 233 4 455787754221 11001112223334333455789999
Q ss_pred ccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-EeChhhHHHHHHccCc
Q 042754 86 ASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY-CAHPQSLHQVIAGMDL 151 (178)
Q Consensus 86 adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~-~~~~~~L~~~i~~l~~ 151 (178)
+|++|.- +=..++.||+++|+|+|..-.+. + ..+.+.+.++ ..+.+.+.+++.+++.
T Consensus 301 ~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~--------~-~~v~~~~ng~~~~~~~~~a~ai~~~l~ 362 (462)
T PLN02846 301 YKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS--------N-EFFKQFPNCRTYDDGKGFVRATLKALA 362 (462)
T ss_pred CCEEEECCCcccchHHHHHHHHcCCcEEEecCCC--------c-ceeecCCceEecCCHHHHHHHHHHHHc
Confidence 9999986 34578999999999999854431 1 3344433343 3477888888887753
No 111
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.61 E-value=0.012 Score=50.69 Aligned_cols=123 Identities=18% Similarity=0.138 Sum_probs=68.6
Q ss_pred cEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc-ccc--ccccCCcceEEEEeCh-hh-HHHH
Q 042754 12 RIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-PTK--SLGEDGLMAVDYFTFS-SS-IADH 82 (178)
Q Consensus 12 ~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~-~~~--~~~~~~~~nv~v~~~~-~~-~~~~ 82 (178)
..++++.|.. |.+.+++++ ..+.+.++ +++ +.|..... ... ......+.++.+.... ++ +..+
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~------~~l~~~~~-~lv-i~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 291 VPLFGVISRLTQQKGVDLLLAAL------PELLELGG-QLV-VLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCEEEEEecCccccChHHHHHHH------HHHHHcCc-EEE-EECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 4466677754 455555554 33444454 655 45655311 111 0001123456555433 33 6689
Q ss_pred hhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC------CCEEE---eChhhHHHHHHcc
Q 042754 83 LRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR------KHLYC---AHPQSLHQVIAGM 149 (178)
Q Consensus 83 ~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~------G~~~~---~~~~~L~~~i~~l 149 (178)
++.||+++.-+ -+.+.+||+++|+|.|+-.... ..+.+.+. +.|+. .+++.|.++|.++
T Consensus 363 ~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg--------~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~ 434 (473)
T TIGR02095 363 YAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG--------LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRA 434 (473)
T ss_pred HHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC--------ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 99999999642 2368999999999999643321 11122222 44543 3788888888776
Q ss_pred C
Q 042754 150 D 150 (178)
Q Consensus 150 ~ 150 (178)
.
T Consensus 435 l 435 (473)
T TIGR02095 435 L 435 (473)
T ss_pred H
Confidence 3
No 112
>PRK00654 glgA glycogen synthase; Provisional
Probab=96.58 E-value=0.023 Score=48.94 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=69.2
Q ss_pred cEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc--c-ccccccCCcceEEE-EeChhh-HHHH
Q 042754 12 RIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV--P-TKSLGEDGLMAVDY-FTFSSS-IADH 82 (178)
Q Consensus 12 ~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~--~-~~~~~~~~~~nv~v-~~~~~~-~~~~ 82 (178)
..++++.|.. |...+++++ ..+...++ +++++ |..... . ........+.++.+ .+|..+ +..+
T Consensus 282 ~~~i~~vGRl~~~KG~~~li~a~------~~l~~~~~-~lviv-G~g~~~~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 282 APLFAMVSRLTEQKGLDLVLEAL------PELLEQGG-QLVLL-GTGDPELEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CcEEEEeeccccccChHHHHHHH------HHHHhcCC-EEEEE-ecCcHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 4467777864 555666655 23333455 66554 654311 1 11000112334543 466544 5688
Q ss_pred hhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHcc
Q 042754 83 LRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGM 149 (178)
Q Consensus 83 ~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l 149 (178)
++.||++|.-+ -+.+.+||+++|+|.|+-..... .+...+.....+.+.|+. .+++.|.++|.++
T Consensus 354 ~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~--~e~v~~~~~~~~~~~G~lv~~~d~~~la~~i~~~ 425 (466)
T PRK00654 354 YAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGL--ADTVIDYNPEDGEATGFVFDDFNAEDLLRALRRA 425 (466)
T ss_pred HhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCc--cceeecCCCCCCCCceEEeCCCCHHHHHHHHHHH
Confidence 99999999742 23699999999999997433211 111111000012244543 3778888888765
No 113
>PHA01630 putative group 1 glycosyl transferase
Probab=96.54 E-value=0.038 Score=45.60 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred hhHHHHhhhccEEEe--c--CChHHHHHHHHcCCCEEEEeC
Q 042754 77 SSIADHLRSASLVIS--H--AGSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 77 ~~~~~~~~~adlvIs--h--aG~~Ti~E~l~~g~P~iviP~ 113 (178)
+++..+|+.||++|. + +-+.++.||+++|+|.|+...
T Consensus 201 ~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~ 241 (331)
T PHA01630 201 DDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEK 241 (331)
T ss_pred HHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCC
Confidence 579999999999984 2 226799999999999998653
No 114
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.39 E-value=0.012 Score=50.28 Aligned_cols=130 Identities=18% Similarity=0.139 Sum_probs=69.2
Q ss_pred CcEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc-ccc--ccccCCcceEEEE-eChhh-HHH
Q 042754 11 KRIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-PTK--SLGEDGLMAVDYF-TFSSS-IAD 81 (178)
Q Consensus 11 ~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~-~~~--~~~~~~~~nv~v~-~~~~~-~~~ 81 (178)
...++++.|.. |...+.+++ ..+.+.+. ++++ .|..... ... ........++.++ +|..+ +..
T Consensus 295 ~~~~i~~vGrl~~~Kg~~~li~a~------~~l~~~~~-~lvi-~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 366 (476)
T cd03791 295 DAPLFGFVGRLTEQKGIDLLLEAL------PELLELGG-QLVI-LGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHL 366 (476)
T ss_pred CCCEEEEEeeccccccHHHHHHHH------HHHHHcCc-EEEE-EecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHH
Confidence 34466777754 455555554 33444444 5544 4554321 110 0001113466544 45433 567
Q ss_pred HhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHccC
Q 042754 82 HLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGMD 150 (178)
Q Consensus 82 ~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l~ 150 (178)
+++.||+++.- +-+.+.+|++++|+|.|+-..... .+...+...-.+.|.|+. .+++.|.+++.++.
T Consensus 367 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~--~e~v~~~~~~~~~~~G~~~~~~~~~~l~~~i~~~l 440 (476)
T cd03791 367 IYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGL--ADTVIDYNEDTGEGTGFVFEGYNADALLAALRRAL 440 (476)
T ss_pred HHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCc--cceEeCCcCCCCCCCeEEeCCCCHHHHHHHHHHHH
Confidence 89999999964 233689999999999986443321 111111100012334554 36788888887763
No 115
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.16 E-value=0.39 Score=38.59 Aligned_cols=128 Identities=23% Similarity=0.259 Sum_probs=68.1
Q ss_pred HHHHhCCCCeEEEEEeCCCcccccccc-cC-CcceEEEE-----eChhhHHHHhhhccEEEecCCh-HHHHHHHHcCCCE
Q 042754 37 QELTRRGYTHLLIQMGRGTYVPTKSLG-ED-GLMAVDYF-----TFSSSIADHLRSASLVISHAGS-GSIFETLRHGKPL 108 (178)
Q Consensus 37 ~~l~~~~~~~vvv~~G~~~~~~~~~~~-~~-~~~nv~v~-----~~~~~~~~~~~~adlvIshaG~-~Ti~E~l~~g~P~ 108 (178)
+.+...+. .+++.......+..+... .. ......+. ++-| ..++|++||.+|+-+-. +-++||++.|+|+
T Consensus 191 k~l~~~g~-~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NP-Y~~~La~Adyii~TaDSinM~sEAasTgkPv 268 (329)
T COG3660 191 KILENQGG-SFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNP-YIDMLAAADYIISTADSINMCSEAASTGKPV 268 (329)
T ss_pred HHHHhCCc-eEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCc-hHHHHhhcceEEEecchhhhhHHHhccCCCe
Confidence 34444564 888888876643322100 00 01111111 3333 56889999999887764 4578999999999
Q ss_pred EEEeCCCC-CCchHHHHHHHHHhCCCEEEeChhhHHHHHHccCcccCCCCCCCChh-HHHHHHHHhcCC
Q 042754 109 IVVVNEDL-MDNHQSELAEELAARKHLYCAHPQSLHQVIAGMDLESLLPYQPGDAT-PVAKLINRFLGF 175 (178)
Q Consensus 109 iviP~~~~-~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~~-~i~~~i~~~~~~ 175 (178)
-+.--+.. ...+ ...-+.|.+.+++...+.+.+. ++ --.|.+-+.+ ++++.|...+|.
T Consensus 269 ~~~~~~~~~s~K~-r~Fi~~L~eq~~AR~f~~~~~~--~e------~ysy~PLnEt~RiA~~Ira~l~~ 328 (329)
T COG3660 269 FILEPPNFNSLKF-RIFIEQLVEQKIARPFEGSNLA--LE------EYSYKPLNETERIAEEIRAELGR 328 (329)
T ss_pred EEEecCCcchHHH-HHHHHHHHHhhhccccCcchhh--hc------ccccCCchHHHHHHHHHHHHhCC
Confidence 87633211 1111 2234445555554332222110 11 1123333445 999999888875
No 116
>PRK14098 glycogen synthase; Provisional
Probab=96.10 E-value=0.034 Score=48.30 Aligned_cols=126 Identities=10% Similarity=0.084 Sum_probs=70.6
Q ss_pred cEEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc--c-ccccccCCcceEEEEeChhh--HHHH
Q 042754 12 RIVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV--P-TKSLGEDGLMAVDYFTFSSS--IADH 82 (178)
Q Consensus 12 ~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~--~-~~~~~~~~~~nv~v~~~~~~--~~~~ 82 (178)
..++++.|.. |.+.+.+++ ..+.+.++ +++ +.|..... . ........+.++.+.++.++ +..+
T Consensus 307 ~~~i~~vgRl~~~KG~d~li~a~------~~l~~~~~-~lv-ivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~ 378 (489)
T PRK14098 307 TPLVGVIINFDDFQGAELLAESL------EKLVELDI-QLV-ICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLA 378 (489)
T ss_pred CCEEEEeccccccCcHHHHHHHH------HHHHhcCc-EEE-EEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHH
Confidence 3466777754 566666665 23333454 554 45654321 1 11100112457877776644 6789
Q ss_pred hhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHHHcc
Q 042754 83 LRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVIAGM 149 (178)
Q Consensus 83 ~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i~~l 149 (178)
++.||+++.-+ =+.+.+|++++|+|.|+.......+ ... ....+.+-|+. .+++.|.++|.++
T Consensus 379 ~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d--~v~--~~~~~~~~G~l~~~~d~~~la~ai~~~ 448 (489)
T PRK14098 379 IAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVE--TIE--EVSEDKGSGFIFHDYTPEALVAKLGEA 448 (489)
T ss_pred HHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCce--eee--cCCCCCCceeEeCCCCHHHHHHHHHHH
Confidence 99999999643 1368999999999988754322111 110 00011233433 3788888888764
No 117
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.93 E-value=0.06 Score=47.84 Aligned_cols=114 Identities=16% Similarity=0.084 Sum_probs=65.9
Q ss_pred CCCCcEEEEEeCCccH--HHHHHHhccHHHHH--HHHhCCCCeEEEEEeCCCcccc-cccccCCc-ceEEEEeChhhHHH
Q 042754 8 VSLKRIVFVTVGTTCF--DALVKAVDTLEVKQ--ELTRRGYTHLLIQMGRGTYVPT-KSLGEDGL-MAVDYFTFSSSIAD 81 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~--~~l~~~~~~~~~~~--~l~~~~~~~vvv~~G~~~~~~~-~~~~~~~~-~nv~v~~~~~~~~~ 81 (178)
+++++.|.+.-||-.. +.+...+ .++.+ .+. .+. ++++..-+...... .......+ ..+++..-- +-.+
T Consensus 410 ~~~~~iIaLLPGSR~~EI~rllPv~--l~aa~~~~l~-~~l-~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~-~~~~ 484 (608)
T PRK01021 410 PSDKPIVAAFPGSRRGDILRNLTIQ--VQAFLASSLA-STH-QLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQ-FRYE 484 (608)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH--HHHHHHHHhc-cCe-EEEEecCchhhHHHHHHHHhhcCCCCeEEecCc-chHH
Confidence 3467899999999743 3444444 12222 222 233 66554333221111 10000111 123333211 1268
Q ss_pred HhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh
Q 042754 82 HLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA 130 (178)
Q Consensus 82 ~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~ 130 (178)
+|++||+++..+| +.+.|+..+|+|+|++-... .=-...|+++.+
T Consensus 485 ~m~aaD~aLaaSG-TaTLEaAL~g~PmVV~YK~s---~Lty~Iak~Lvk 529 (608)
T PRK01021 485 LMRECDCALAKCG-TIVLETALNQTPTIVTCQLR---PFDTFLAKYIFK 529 (608)
T ss_pred HHHhcCeeeecCC-HHHHHHHHhCCCEEEEEecC---HHHHHHHHHHHh
Confidence 9999999999999 67899999999999976542 234567888887
No 118
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=95.88 E-value=0.0091 Score=49.61 Aligned_cols=100 Identities=17% Similarity=0.243 Sum_probs=59.3
Q ss_pred cceEEEEeChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHH----HHHhCCCE-EEeChhh
Q 042754 67 LMAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAE----ELAARKHL-YCAHPQS 141 (178)
Q Consensus 67 ~~nv~v~~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~----~l~~~G~~-~~~~~~~ 141 (178)
..++.....-+++.++|..||++||--. +.+.|.+.+++|+|+..... ++....+ -+.+...| ++.+.++
T Consensus 251 ~~~i~~~~~~~~~~~ll~~aDiLITDyS-Si~fD~~~l~KPiify~~D~----~~Y~~~rg~~~~~~~~~pg~~~~~~~e 325 (369)
T PF04464_consen 251 NSNIIFVSDNEDIYDLLAAADILITDYS-SIIFDFLLLNKPIIFYQPDL----EEYEKERGFYFDYEEDLPGPIVYNFEE 325 (369)
T ss_dssp TTTEEE-TT-S-HHHHHHT-SEEEESS--THHHHHGGGT--EEEE-TTT----TTTTTTSSBSS-TTTSSSS-EESSHHH
T ss_pred CCcEEECCCCCCHHHHHHhcCEEEEech-hHHHHHHHhCCCEEEEeccH----HHHhhccCCCCchHhhCCCceeCCHHH
Confidence 3566665555578999999999999876 78999999999999876532 1221100 12222333 3458899
Q ss_pred HHHHHHccC-------------cccCCCCCCCChh-HHHHHHHH
Q 042754 142 LHQVIAGMD-------------LESLLPYQPGDAT-PVAKLINR 171 (178)
Q Consensus 142 L~~~i~~l~-------------~~~~~~~~~~~~~-~i~~~i~~ 171 (178)
|.++|++.. ...+-.+.++++. +|++.|.+
T Consensus 326 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~k 369 (369)
T PF04464_consen 326 LIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIFK 369 (369)
T ss_dssp HHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHHH
T ss_pred HHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 999998853 1233456777777 99988864
No 119
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=95.86 E-value=0.2 Score=42.49 Aligned_cols=78 Identities=15% Similarity=0.062 Sum_probs=62.6
Q ss_pred ceEEEEeChhhHHHHhhhccEEEe------cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-Chh
Q 042754 68 MAVDYFTFSSSIADHLRSASLVIS------HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-HPQ 140 (178)
Q Consensus 68 ~nv~v~~~~~~~~~~~~~adlvIs------haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-~~~ 140 (178)
.+|.+.+-.-.|..++..||+++- +||.| ..|.+++|+|.|.=|+.+ .|.+.++.+.+.|+++.+ +.+
T Consensus 300 tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~----Nf~ei~~~l~~~ga~~~v~~~~ 374 (419)
T COG1519 300 TDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTF----NFSDIAERLLQAGAGLQVEDAD 374 (419)
T ss_pred CcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccc----cHHHHHHHHHhcCCeEEECCHH
Confidence 467788877789999999999854 66654 899999999999888763 499999999999999876 445
Q ss_pred hHHHHHHccC
Q 042754 141 SLHQVIAGMD 150 (178)
Q Consensus 141 ~L~~~i~~l~ 150 (178)
.|.+++..++
T Consensus 375 ~l~~~v~~l~ 384 (419)
T COG1519 375 LLAKAVELLL 384 (419)
T ss_pred HHHHHHHHhc
Confidence 5666666654
No 120
>PLN02501 digalactosyldiacylglycerol synthase
Probab=95.70 E-value=0.2 Score=45.55 Aligned_cols=120 Identities=11% Similarity=0.132 Sum_probs=71.1
Q ss_pred EEEeCCc----cHHHHHHHhccHHHHHHHHh--CCCCeEEEEEeCCCccccccc-ccCCcceEEEEeChhhHHHHhhhcc
Q 042754 15 FVTVGTT----CFDALVKAVDTLEVKQELTR--RGYTHLLIQMGRGTYVPTKSL-GEDGLMAVDYFTFSSSIADHLRSAS 87 (178)
Q Consensus 15 lVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~~~vvv~~G~~~~~~~~~~-~~~~~~nv~v~~~~~~~~~~~~~ad 87 (178)
+++.|-. |...|++++ ..+.. .++ + +++.|.+........ ......++...++.++...+|+.+|
T Consensus 549 iLfVGRLa~EKGld~LLeAl------a~L~~~~pnv-r-LvIVGDGP~reeLe~la~eLgL~V~FLG~~dd~~~lyasaD 620 (794)
T PLN02501 549 AYFLGKMVWAKGYRELIDLL------AKHKNELDGF-N-LDVFGNGEDAHEVQRAAKRLDLNLNFLKGRDHADDSLHGYK 620 (794)
T ss_pred eEEEEcccccCCHHHHHHHH------HHHHhhCCCe-E-EEEEcCCccHHHHHHHHHHcCCEEEecCCCCCHHHHHHhCC
Confidence 4456643 566676665 12222 233 4 455676643211100 0112235777788877778999999
Q ss_pred EEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EEeChhhHHHHHHccCc
Q 042754 88 LVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-YCAHPQSLHQVIAGMDL 151 (178)
Q Consensus 88 lvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~-~~~~~~~L~~~i~~l~~ 151 (178)
++|.-+ =..++.||+++|+|+|....+. .+. +.+-+.+ ...+++.+.++|.+++.
T Consensus 621 VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG----~e~-----V~~g~nGll~~D~EafAeAI~~LLs 680 (794)
T PLN02501 621 VFINPSISDVLCTATAEALAMGKFVVCADHPS----NEF-----FRSFPNCLTYKTSEDFVAKVKEALA 680 (794)
T ss_pred EEEECCCcccchHHHHHHHHcCCCEEEecCCC----Cce-----EeecCCeEecCCHHHHHHHHHHHHh
Confidence 998732 2478999999999999865442 111 2222222 23578899999888754
No 121
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.62 E-value=0.077 Score=45.09 Aligned_cols=78 Identities=9% Similarity=0.081 Sum_probs=53.1
Q ss_pred cceEEEEeCh--hhHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHH---hCCCEE-E
Q 042754 67 LMAVDYFTFS--SSIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELA---ARKHLY-C 136 (178)
Q Consensus 67 ~~nv~v~~~~--~~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~---~~G~~~-~ 136 (178)
..+|+..+++ +++..+|+.||++|+-. =+.++.|++++|+|.|+.-... .- ...+. +...|+ .
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~gg----p~---~~iv~~~~~g~~G~l~ 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGG----PL---LDIVVPWDGGPTGFLA 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCC----Cc---hheeeccCCCCceEEe
Confidence 4578888886 46889999999988532 2368999999999999743221 11 11121 222343 3
Q ss_pred eChhhHHHHHHccCc
Q 042754 137 AHPQSLHQVIAGMDL 151 (178)
Q Consensus 137 ~~~~~L~~~i~~l~~ 151 (178)
.+++++.++|.++..
T Consensus 377 ~d~~~la~ai~~ll~ 391 (419)
T cd03806 377 STAEEYAEAIEKILS 391 (419)
T ss_pred CCHHHHHHHHHHHHh
Confidence 489999999998863
No 122
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=95.53 E-value=0.21 Score=47.13 Aligned_cols=76 Identities=18% Similarity=0.200 Sum_probs=51.2
Q ss_pred cceEEEEeCh--hhHHHHhhhc----cEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 67 LMAVDYFTFS--SSIADHLRSA----SLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 67 ~~nv~v~~~~--~~~~~~~~~a----dlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
..+|.+.+|. +++..+|+.| |++|.-+ =+.++.||+++|+|+|.-... + ..+.+....-|+.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G----~~EII~~g~nGlL 618 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----G----PVDIHRVLDNGLL 618 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----C----cHHHhccCCcEEE
Confidence 3567777775 4688999888 5888753 237999999999999975432 1 1122222223333
Q ss_pred ---eChhhHHHHHHccC
Q 042754 137 ---AHPQSLHQVIAGMD 150 (178)
Q Consensus 137 ---~~~~~L~~~i~~l~ 150 (178)
.+++.|.++|.+++
T Consensus 619 VdP~D~eaLA~AL~~LL 635 (1050)
T TIGR02468 619 VDPHDQQAIADALLKLV 635 (1050)
T ss_pred ECCCCHHHHHHHHHHHh
Confidence 37788999988875
No 123
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=95.44 E-value=0.074 Score=43.66 Aligned_cols=113 Identities=12% Similarity=0.155 Sum_probs=69.8
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh--HHHHhhhccEE
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS--IADHLRSASLV 89 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~--~~~~~~~adlv 89 (178)
+..++..|+.+... .+ .. ...++ ++ +++|.+.... . ...||...+|++. +..+|+..-.+
T Consensus 169 ~~~i~yaG~l~k~~---~l------~~-~~~~~-~l-~i~G~g~~~~-~-----~~~~V~f~G~~~~eel~~~l~~~~gL 230 (333)
T PRK09814 169 QKKINFAGNLEKSP---FL------KN-WSQGI-KL-TVFGPNPEDL-E-----NSANISYKGWFDPEELPNELSKGFGL 230 (333)
T ss_pred CceEEEecChhhch---HH------Hh-cCCCC-eE-EEECCCcccc-c-----cCCCeEEecCCCHHHHHHHHhcCcCe
Confidence 44677888775211 12 11 12233 44 5677664322 1 2358999999853 66677763223
Q ss_pred EecC--------------ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEe-ChhhHHHHHHccC
Q 042754 90 ISHA--------------GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCA-HPQSLHQVIAGMD 150 (178)
Q Consensus 90 Isha--------------G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~-~~~~L~~~i~~l~ 150 (178)
|.-. =.+-+.+.+++|+|+|+-+ +...++.+++.+.|+.. +.+++.+.+.++.
T Consensus 231 v~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~--------~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~ 298 (333)
T PRK09814 231 VWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS--------KAAIADFIVENGLGFVVDSLEELPEIIDNIT 298 (333)
T ss_pred EEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC--------CccHHHHHHhCCceEEeCCHHHHHHHHHhcC
Confidence 3221 1234788999999999732 23578899999999875 5678888888764
No 124
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=95.41 E-value=0.038 Score=37.48 Aligned_cols=57 Identities=14% Similarity=0.043 Sum_probs=35.2
Q ss_pred CCCCcEEEEEeCCccHH----HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEE
Q 042754 8 VSLKRIVFVTVGTTCFD----ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVD 71 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~----~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~ 71 (178)
++++|+|+||+|+.... .-...+ ..+++++.+.+. ++|+..+........ ..+.|++
T Consensus 37 ~~~RpRVcvT~G~~~~~~~g~~~~~~l--~~ll~ala~ldv-EvV~a~~~~~~~~lg----~lP~nVR 97 (97)
T PF06722_consen 37 PPGRPRVCVTLGTSVRMFFGPGGVPLL--RRLLEALAGLDV-EVVVALPAAQRAELG----ELPDNVR 97 (97)
T ss_dssp STSSEEEEEEETHHHCHHHSCHHHCHH--HHHHHHHHTSSS-EEEEEETTCCCGGCC----S-TTTEE
T ss_pred CCCCCEEEEEcCCCccccccccchHHH--HHHHHHHhhCCc-EEEEECCHHHHHhhC----CCCCCCC
Confidence 46789999999975211 111122 233678888897 999999876543322 2456653
No 125
>PRK10125 putative glycosyl transferase; Provisional
Probab=95.16 E-value=0.27 Score=41.63 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=35.4
Q ss_pred eEEEEeCh---hhHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCC
Q 042754 69 AVDYFTFS---SSIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 69 nv~v~~~~---~~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~ 114 (178)
++...+|. .++.++|+.||++|.-+ -..++.||+++|+|+|.-...
T Consensus 287 ~v~~~g~~~~~~~l~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~g 339 (405)
T PRK10125 287 NVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSD 339 (405)
T ss_pred ceEEecCcCCHHHHHHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEEeCCC
Confidence 46666665 34788999999998743 346899999999999986543
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.92 E-value=1.2 Score=38.22 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=76.8
Q ss_pred CCcEEEEEeCCcc-H--------HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCC------cccc--cc--cccCCcceE
Q 042754 10 LKRIVFVTVGTTC-F--------DALVKAVDTLEVKQELTRRGYTHLLIQMGRGT------YVPT--KS--LGEDGLMAV 70 (178)
Q Consensus 10 ~~~~ilVt~Gs~~-~--------~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~------~~~~--~~--~~~~~~~nv 70 (178)
++++|.+++-... + ....+.+ .++++.+.+.++ +++++..... .+.. .. ..-..+.++
T Consensus 233 ~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~l--a~~i~~Li~~g~-~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~ 309 (426)
T PRK10017 233 QQKTVAITLRELAPFDKRLGTTQQAYEKAF--AGVVNRIIDEGY-QVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARY 309 (426)
T ss_pred cCCEEEEEecccccccccccccHHHHHHHH--HHHHHHHHHCCC-eEEEEecccCccCCCCchHHHHHHHHHhcccccce
Confidence 4678888876442 1 2233333 334566666676 7766654211 1111 00 000112233
Q ss_pred EEE-e-Ch-hhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE-EE-----eChhh
Q 042754 71 DYF-T-FS-SSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL-YC-----AHPQS 141 (178)
Q Consensus 71 ~v~-~-~~-~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~-~~-----~~~~~ 141 (178)
++. + |. .++..++..||++|+. =.-++.=++..|+|.|.+++. .....++.+.|+. ++ .+.++
T Consensus 310 ~vi~~~~~~~e~~~iIs~~dl~ig~-RlHa~I~a~~~gvP~i~i~Y~-------~K~~~~~~~lg~~~~~~~~~~l~~~~ 381 (426)
T PRK10017 310 HVVMDELNDLEMGKILGACELTVGT-RLHSAIISMNFGTPAIAINYE-------HKSAGIMQQLGLPEMAIDIRHLLDGS 381 (426)
T ss_pred eEecCCCChHHHHHHHhhCCEEEEe-cchHHHHHHHcCCCEEEeeeh-------HHHHHHHHHcCCccEEechhhCCHHH
Confidence 332 2 32 3466899999999995 455677789999999999873 4667778888876 32 25667
Q ss_pred HHHHHHccC
Q 042754 142 LHQVIAGMD 150 (178)
Q Consensus 142 L~~~i~~l~ 150 (178)
|.+.+.++.
T Consensus 382 Li~~v~~~~ 390 (426)
T PRK10017 382 LQAMVADTL 390 (426)
T ss_pred HHHHHHHHH
Confidence 777777764
No 127
>PLN02949 transferase, transferring glycosyl groups
Probab=94.78 E-value=0.22 Score=43.09 Aligned_cols=81 Identities=11% Similarity=-0.040 Sum_probs=51.7
Q ss_pred cceEEEEeCh--hhHHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChh
Q 042754 67 LMAVDYFTFS--SSIADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQ 140 (178)
Q Consensus 67 ~~nv~v~~~~--~~~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~ 140 (178)
..+|...+++ +++..+|+.||++|.-. =+.++.|++++|+|.|......... +...... -...|+. +.+++
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~-eIV~~~~-~g~tG~l-~~~~~ 410 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKM-DIVLDED-GQQTGFL-ATTVE 410 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcc-eeeecCC-CCccccc-CCCHH
Confidence 4578888887 46889999999999522 1358999999999999865432100 0000000 0112322 24788
Q ss_pred hHHHHHHccC
Q 042754 141 SLHQVIAGMD 150 (178)
Q Consensus 141 ~L~~~i~~l~ 150 (178)
++.++|.++.
T Consensus 411 ~la~ai~~ll 420 (463)
T PLN02949 411 EYADAILEVL 420 (463)
T ss_pred HHHHHHHHHH
Confidence 8999888874
No 128
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.72 E-value=0.14 Score=40.73 Aligned_cols=100 Identities=16% Similarity=0.214 Sum_probs=55.1
Q ss_pred CcEEEEEeCCcc-HHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCC-cceE-EEEeC--hhhHHHHhh
Q 042754 11 KRIVFVTVGTTC-FDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDG-LMAV-DYFTF--SSSIADHLR 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~-~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~-~~nv-~v~~~--~~~~~~~~~ 84 (178)
++.|++..|+.+ .+.. .+.. .++++.+...++ ++++..|+.+........... ..++ .+.+. ..++..+++
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~--~~l~~~l~~~~~-~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~ 197 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERF--AALADRLLARGA-RVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLA 197 (279)
T ss_pred CCEEEECCCCCCccccCCHHHH--HHHHHHHHHCCC-EEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHH
Confidence 567888888642 1111 1111 122345555566 777766554321111000000 1121 12222 356889999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.||++|+.-. |++.=|.++|+|+|.+-.+
T Consensus 198 ~~~l~I~~Ds-g~~HlA~a~~~p~i~l~g~ 226 (279)
T cd03789 198 RADLVVTNDS-GPMHLAAALGTPTVALFGP 226 (279)
T ss_pred hCCEEEeeCC-HHHHHHHHcCCCEEEEECC
Confidence 9999999744 5677778999999998543
No 129
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=94.61 E-value=0.082 Score=42.08 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=36.1
Q ss_pred eEEEEeChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 69 AVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 69 nv~v~~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
++.+..-.-++.+++..||.|||-.+ ++-.||+.+|+|++++-.+
T Consensus 183 ~~~~~~~~~~~~~Ll~~s~~VvtinS-tvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 183 NVVIIDDDVNLYELLEQSDAVVTINS-TVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred CeEEECCCCCHHHHHHhCCEEEEECC-HHHHHHHHcCCceEEecCc
Confidence 44444333358899999999999877 7999999999999998654
No 130
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=94.10 E-value=0.46 Score=41.17 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=38.9
Q ss_pred cceEEEEeChh--hHHHHhhhccEEE---ecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 042754 67 LMAVDYFTFSS--SIADHLRSASLVI---SHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL 134 (178)
Q Consensus 67 ~~nv~v~~~~~--~~~~~~~~adlvI---shaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~ 134 (178)
+.++.+.+..+ ++-..+..+|++. ...|++|.+|+|++|+|+|..|-... -...-|..|...|+.
T Consensus 341 ~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~---~sR~~aSiL~~lGl~ 410 (468)
T PF13844_consen 341 PDRIIFSPVAPREEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETM---ASRVGASILRALGLP 410 (468)
T ss_dssp GGGEEEEE---HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSG---GGSHHHHHHHHHT-G
T ss_pred hhhEEEcCCCCHHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCc---hhHHHHHHHHHcCCc
Confidence 35677777654 2335567899996 34688999999999999999886543 245677788888886
No 131
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.04 E-value=0.19 Score=41.20 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=65.5
Q ss_pred ceEEEEeChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHH--HHHHHHHh-CCCEEEe--ChhhH
Q 042754 68 MAVDYFTFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQS--ELAEELAA-RKHLYCA--HPQSL 142 (178)
Q Consensus 68 ~nv~v~~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~--~nA~~l~~-~G~~~~~--~~~~L 142 (178)
.|..+.---.++.+++.++|++|..|| +.+-.+.-.|||.|-+|-.. -|+ ..|++=.+ .|+.+.. .+..-
T Consensus 294 dnc~l~lsqqsfadiLH~adaalgmAG-TAtEQavGLGkPvi~fPg~G----PQy~pgFA~rQ~rLLG~sltlv~~~aq~ 368 (412)
T COG4370 294 DNCSLWLSQQSFADILHAADAALGMAG-TATEQAVGLGKPVIGFPGQG----PQYNPGFAERQQRLLGASLTLVRPEAQA 368 (412)
T ss_pred CceEEEEeHHHHHHHHHHHHHHHHhcc-chHHHhhccCCceeecCCCC----CCcChHHHHHHHHHhcceeeecCCchhh
Confidence 355544333469999999999999999 45667888999999999653 344 34554444 4777643 22333
Q ss_pred HHHHHc-cC---------c-ccCCCCCCCChh-HHHHHHHHhc
Q 042754 143 HQVIAG-MD---------L-ESLLPYQPGDAT-PVAKLINRFL 173 (178)
Q Consensus 143 ~~~i~~-l~---------~-~~~~~~~~~~~~-~i~~~i~~~~ 173 (178)
...+.+ ++ + +..+....+.++ +|++.+.+..
T Consensus 369 a~~~~q~ll~dp~r~~air~nGqrRiGqaGaa~rIAe~l~e~a 411 (412)
T COG4370 369 AAQAVQELLGDPQRLTAIRHNGQRRIGQAGAARRIAEELGEMA 411 (412)
T ss_pred HHHHHHHHhcChHHHHHHHhcchhhccCcchHHHHHHHHHHhc
Confidence 333332 32 1 334556666777 9999888764
No 132
>PRK14099 glycogen synthase; Provisional
Probab=93.93 E-value=0.35 Score=42.02 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=66.2
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc--cc-ccccccCCcceE-EEEeChhhHHHHh-
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY--VP-TKSLGEDGLMAV-DYFTFSSSIADHL- 83 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~--~~-~~~~~~~~~~nv-~v~~~~~~~~~~~- 83 (178)
.++.+.|.. |.+.+++++ ..+.+.++ +++ +.|.... .. ........+.++ ...+|.+++..++
T Consensus 296 ~li~~VgRL~~~KG~d~Li~A~------~~l~~~~~-~lv-ivG~G~~~~~~~l~~l~~~~~~~v~~~~G~~~~l~~~~~ 367 (485)
T PRK14099 296 LLLGVISRLSWQKGLDLLLEAL------PTLLGEGA-QLA-LLGSGDAELEARFRAAAQAYPGQIGVVIGYDEALAHLIQ 367 (485)
T ss_pred cEEEEEecCCccccHHHHHHHH------HHHHhcCc-EEE-EEecCCHHHHHHHHHHHHHCCCCEEEEeCCCHHHHHHHH
Confidence 355566753 555666655 23333354 554 4454431 11 110001122344 5678877888887
Q ss_pred hhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHH-H--hCCCEEE---eChhhHHHHHHc
Q 042754 84 RSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEEL-A--ARKHLYC---AHPQSLHQVIAG 148 (178)
Q Consensus 84 ~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l-~--~~G~~~~---~~~~~L~~~i~~ 148 (178)
+.||+++.- +=+.+.+||+++|+|.|+-.... . .+........ + ..+.|+. .+++.|.++|.+
T Consensus 368 a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GG-l-~d~V~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~ 440 (485)
T PRK14099 368 AGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGG-L-ADTVVDANEMAIATGVATGVQFSPVTADALAAALRK 440 (485)
T ss_pred hcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCC-c-cceeecccccccccCCCceEEeCCCCHHHHHHHHHH
Confidence 579999963 22478999999998777643221 1 1111111101 0 0123443 378889888875
No 133
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=93.91 E-value=1.4 Score=40.61 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=47.6
Q ss_pred cceEEEEeCh-h--hHHHHhh----hccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 67 LMAVDYFTFS-S--SIADHLR----SASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 67 ~~nv~v~~~~-~--~~~~~~~----~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
..+|.+.++. + ++.+++. .+|++|.-+ -+.|+.||+++|+|.|.-... + .++.+.+-.-|+
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~G----G----~~EiV~dg~tGf 689 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFG----G----PLEIIQDGVSGF 689 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCC----C----HHHHhcCCCcEE
Confidence 3578877764 2 3445554 357887543 347999999999999973322 2 344454444455
Q ss_pred Ee---ChhhHHHHHHcc
Q 042754 136 CA---HPQSLHQVIAGM 149 (178)
Q Consensus 136 ~~---~~~~L~~~i~~l 149 (178)
.. +++.+.++|.++
T Consensus 690 LVdp~D~eaLA~aL~~l 706 (784)
T TIGR02470 690 HIDPYHGEEAAEKIVDF 706 (784)
T ss_pred EeCCCCHHHHHHHHHHH
Confidence 43 678888888765
No 134
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=93.74 E-value=0.39 Score=38.12 Aligned_cols=47 Identities=19% Similarity=0.289 Sum_probs=36.3
Q ss_pred ceEEEE--eChhhHHHHh---hhccEEEecCChHH------HHHHHHcCCCEEEEeCC
Q 042754 68 MAVDYF--TFSSSIADHL---RSASLVISHAGSGS------IFETLRHGKPLIVVVNE 114 (178)
Q Consensus 68 ~nv~v~--~~~~~~~~~~---~~adlvIshaG~~T------i~E~l~~g~P~iviP~~ 114 (178)
.++... ||..+++..| -.+|++||+-.+++ +.-|..+|+|.|+|-++
T Consensus 174 ~~Iia~~GPfs~~~n~all~q~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 174 ARIIAMRGPFSEEDNKALLEQYRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred hhEEEecCCcChHHHHHHHHHhCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 455555 7776665555 68999999977776 77789999999999776
No 135
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=93.63 E-value=1.9 Score=35.88 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=24.5
Q ss_pred hccEEEecCChHH---HHHHHHcCCCEEEEe
Q 042754 85 SASLVISHAGSGS---IFETLRHGKPLIVVV 112 (178)
Q Consensus 85 ~adlvIshaG~~T---i~E~l~~g~P~iviP 112 (178)
+-|+||++||+-+ +.-+...|+|.++.-
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e 121 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLHE 121 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEEC
Confidence 4689999999996 899999999998753
No 136
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.23 E-value=0.66 Score=38.10 Aligned_cols=63 Identities=21% Similarity=0.189 Sum_probs=45.5
Q ss_pred HHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHcc
Q 042754 81 DHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGM 149 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l 149 (178)
.++-.|+++|+- |++--.||+.+|+|+|.+- +. .-...-+++.+.|..+. .++.+..+...++
T Consensus 248 ~Llyya~lvig~-ggTMarEaAlLGtpaIs~~-pG----kll~vdk~lie~G~~~~s~~~~~~~~~a~~~ 311 (346)
T COG1817 248 SLLYYATLVIGA-GGTMAREAALLGTPAISCY-PG----KLLAVDKYLIEKGLLYHSTDEIAIVEYAVRN 311 (346)
T ss_pred HHHhhhheeecC-CchHHHHHHHhCCceEEec-CC----ccccccHHHHhcCceeecCCHHHHHHHHHHH
Confidence 688999999995 5477899999999999863 42 23345678899999886 4555544444443
No 137
>PLN00142 sucrose synthase
Probab=93.17 E-value=1.8 Score=40.06 Aligned_cols=73 Identities=12% Similarity=0.126 Sum_probs=44.4
Q ss_pred ceEEEEeCh------hhHHHHhh-hccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 68 MAVDYFTFS------SSIADHLR-SASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 68 ~nv~v~~~~------~~~~~~~~-~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
.+|.+.++. +++..+++ .+|++|.-+ =+.|+.||+++|+|+|.-... + ..+.+.+-.-|+.
T Consensus 642 ~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvG----G----~~EIV~dG~tG~L 713 (815)
T PLN00142 642 GQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQG----G----PAEIIVDGVSGFH 713 (815)
T ss_pred CcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCC----C----HHHHhcCCCcEEE
Confidence 456665542 23445555 478888642 236999999999999874322 2 3334444334544
Q ss_pred e---ChhhHHHHHHc
Q 042754 137 A---HPQSLHQVIAG 148 (178)
Q Consensus 137 ~---~~~~L~~~i~~ 148 (178)
+ +++.+.++|.+
T Consensus 714 V~P~D~eaLA~aI~~ 728 (815)
T PLN00142 714 IDPYHGDEAANKIAD 728 (815)
T ss_pred eCCCCHHHHHHHHHH
Confidence 3 67788887754
No 138
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=93.07 E-value=0.36 Score=39.31 Aligned_cols=77 Identities=18% Similarity=0.145 Sum_probs=46.8
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeC--hhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeC
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTF--SSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~--~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~ 113 (178)
++.+...++ ++++..|................++.+.+- +.++..+++.||++|+-=. |.+.=|.+.|+|.|.+--
T Consensus 203 i~~l~~~~~-~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I~nDS-Gp~HlA~A~g~p~valfG 280 (322)
T PRK10964 203 IGLLAPSGL-RIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVVSVDT-GLSHLTAALDRPNITLYG 280 (322)
T ss_pred HHHHHHCCC-eEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEEecCC-cHHHHHHHhCCCEEEEEC
Confidence 345555565 777655653211110000001122333332 4578899999999999655 889999999999999844
Q ss_pred C
Q 042754 114 E 114 (178)
Q Consensus 114 ~ 114 (178)
+
T Consensus 281 p 281 (322)
T PRK10964 281 P 281 (322)
T ss_pred C
Confidence 3
No 139
>PLN02939 transferase, transferring glycosyl groups
Probab=92.95 E-value=0.89 Score=42.71 Aligned_cols=127 Identities=9% Similarity=0.037 Sum_probs=70.2
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccc----cc--ccccCCcceEEEEeChhh--HH
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVP----TK--SLGEDGLMAVDYFTFSSS--IA 80 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~----~~--~~~~~~~~nv~v~~~~~~--~~ 80 (178)
.++.+.|.. |...+.+++ ..+...++ ++ ++.|.+.... .. ........+|.+..+.++ ..
T Consensus 780 pLIg~VGRL~~QKGiDlLleA~------~~Ll~~dv-qL-VIvGdGp~~~~e~eL~~La~~l~l~drV~FlG~~de~lah 851 (977)
T PLN02939 780 PLVGCITRLVPQKGVHLIRHAI------YKTAELGG-QF-VLLGSSPVPHIQREFEGIADQFQSNNNIRLILKYDEALSH 851 (977)
T ss_pred eEEEEeecCCcccChHHHHHHH------HHHhhcCC-EE-EEEeCCCcHHHHHHHHHHHHHcCCCCeEEEEeccCHHHHH
Confidence 467777754 566666655 22223354 55 4557553111 00 000112356887777665 35
Q ss_pred HHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHHH--HHHHH---hCCCEEE-eChhhHHHHHHcc
Q 042754 81 DHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSEL--AEELA---ARKHLYC-AHPQSLHQVIAGM 149 (178)
Q Consensus 81 ~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~n--A~~l~---~~G~~~~-~~~~~L~~~i~~l 149 (178)
.+|+.||++|.-+ -+.+.+||+++|+|.|+....... +-..+ ...+. ..|+.+. .+++.|.++|.++
T Consensus 852 ~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~--DtV~d~d~e~i~~eg~NGfLf~~~D~eaLa~AL~rA 928 (977)
T PLN02939 852 SIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLN--DSVFDFDDETIPVELRNGFTFLTPDEQGLNSALERA 928 (977)
T ss_pred HHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCc--ceeecCCccccccCCCceEEecCCCHHHHHHHHHHH
Confidence 7999999999642 247999999999999975443211 11111 11111 2343332 3777888777665
No 140
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=92.42 E-value=1.3 Score=33.46 Aligned_cols=52 Identities=13% Similarity=0.119 Sum_probs=38.1
Q ss_pred hccE-EEecCChHHHH----------------HHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 85 SASL-VISHAGSGSIF----------------ETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 85 ~adl-vIshaG~~Ti~----------------E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
++|+ +|.-|-++|+. .++..++|.+++|.......-+.+|.+.|.+.|+.+.
T Consensus 75 ~aD~~vIaPATantiAkiA~GiaD~Llt~~a~~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii 143 (181)
T TIGR00421 75 PFDGMVVVPCSMKTLSAIANGYADNLITRAADVCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIIL 143 (181)
T ss_pred hhCEEEEecCCHhHHHHHHcccCCCHHHHHHHHHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEE
Confidence 4664 47777777654 3578999999999764333445679999999998764
No 141
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=92.30 E-value=0.9 Score=36.82 Aligned_cols=100 Identities=14% Similarity=0.114 Sum_probs=55.1
Q ss_pred CCcEEEEEeCCc-cHHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCccc-ccccccCCcceEEEEe--ChhhHHHHhh
Q 042754 10 LKRIVFVTVGTT-CFDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVP-TKSLGEDGLMAVDYFT--FSSSIADHLR 84 (178)
Q Consensus 10 ~~~~ilVt~Gs~-~~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~-~~~~~~~~~~nv~v~~--~~~~~~~~~~ 84 (178)
++|.|++..|+. ..+.. .+.. .++++.+.+.++ +++++.|...... ........ .+..+.+ -+.++..+++
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~--~~l~~~l~~~~~-~~vl~~g~~~e~~~~~~i~~~~-~~~~l~g~~sL~el~ali~ 253 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERW--RELARLLLARGL-QIVLPWGNDAEKQRAERIAEAL-PGAVVLPKMSLAEVAALLA 253 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHH--HHHHHHHHHCCC-eEEEeCCCHHHHHHHHHHHhhC-CCCeecCCCCHHHHHHHHH
Confidence 467777777753 22211 1111 112344544565 7777656432111 11000001 1112223 2456889999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.||++||.=. |.+.=|.++|+|.|.+--+
T Consensus 254 ~a~l~I~~DS-gp~HlAaa~g~P~i~lfg~ 282 (319)
T TIGR02193 254 GADAVVGVDT-GLTHLAAALDKPTVTLYGA 282 (319)
T ss_pred cCCEEEeCCC-hHHHHHHHcCCCEEEEECC
Confidence 9999999654 7889999999999987433
No 142
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=92.17 E-value=1.5 Score=33.25 Aligned_cols=70 Identities=24% Similarity=0.356 Sum_probs=37.5
Q ss_pred CcEEEEEeCCc-------------cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-
Q 042754 11 KRIVFVTVGTT-------------CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS- 76 (178)
Q Consensus 11 ~~~ilVt~Gs~-------------~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~- 76 (178)
.+.||||.|.. ..+.+-..+ .+.+...|. +|.+++|+....+ |.++.+..+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~l-----A~~~~~~Ga-~V~li~g~~~~~~--------p~~~~~i~v~s 68 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAAL-----AEEAARRGA-EVTLIHGPSSLPP--------PPGVKVIRVES 68 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHH-----HHHHHHTT--EEEEEE-TTS------------TTEEEEE-SS
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHH-----HHHHHHCCC-EEEEEecCccccc--------cccceEEEecc
Confidence 46789999852 123444444 345556786 9999999964321 2234444432
Q ss_pred -hh----HHHHhhhccEEEecCC
Q 042754 77 -SS----IADHLRSASLVISHAG 94 (178)
Q Consensus 77 -~~----~~~~~~~adlvIshaG 94 (178)
.+ +.+.++.+|++|+-|-
T Consensus 69 a~em~~~~~~~~~~~Di~I~aAA 91 (185)
T PF04127_consen 69 AEEMLEAVKELLPSADIIIMAAA 91 (185)
T ss_dssp HHHHHHHHHHHGGGGSEEEE-SB
T ss_pred hhhhhhhhccccCcceeEEEecc
Confidence 33 4455578999998765
No 143
>PLN02316 synthase/transferase
Probab=92.08 E-value=1.8 Score=41.17 Aligned_cols=128 Identities=9% Similarity=0.018 Sum_probs=68.4
Q ss_pred EEEEEeCCc----cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc----c--cc--ccCCcceEEEEeChhh-H
Q 042754 13 IVFVTVGTT----CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT----K--SL--GEDGLMAVDYFTFSSS-I 79 (178)
Q Consensus 13 ~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~----~--~~--~~~~~~nv~v~~~~~~-~ 79 (178)
.++.+.|-. |...|.+++ ..+...+. ++++ .|....... . .. ....+.++.+..+.++ +
T Consensus 841 plVg~VGRL~~qKGvdlLi~Al------~~ll~~~~-qlVI-vG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~l 912 (1036)
T PLN02316 841 PLVGIITRLTHQKGIHLIKHAI------WRTLERNG-QVVL-LGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPL 912 (1036)
T ss_pred eEEEEEeccccccCHHHHHHHH------HHHhhcCc-EEEE-EeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHH
Confidence 466677754 555666655 22223354 6654 675522110 0 00 0012345665544444 3
Q ss_pred -HHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCCCCCCchHHH-------HHHH--HHhCCCEEE-eChhhHHH
Q 042754 80 -ADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNEDLMDNHQSE-------LAEE--LAARKHLYC-AHPQSLHQ 144 (178)
Q Consensus 80 -~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~-------nA~~--l~~~G~~~~-~~~~~L~~ 144 (178)
+.+|+.||+++.-+ =+.+.+||+++|+|.|+-..... .+... +++. ....|+.+. .+++.|..
T Consensus 913 ah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL--~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~ 990 (1036)
T PLN02316 913 SHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGL--FDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDY 990 (1036)
T ss_pred HHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCc--HhhccccccccccccccccCCceEEeCCCCHHHHHH
Confidence 37999999999542 24899999999999987433221 11111 1110 012233332 37888888
Q ss_pred HHHccC
Q 042754 145 VIAGMD 150 (178)
Q Consensus 145 ~i~~l~ 150 (178)
+|.+++
T Consensus 991 AL~raL 996 (1036)
T PLN02316 991 ALNRAI 996 (1036)
T ss_pred HHHHHH
Confidence 887764
No 144
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=91.94 E-value=0.18 Score=39.28 Aligned_cols=100 Identities=16% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCCcEEEEEeCCcc-HHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc--cccCCc-ceEEEEeC--hhhHHH
Q 042754 9 SLKRIVFVTVGTTC-FDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS--LGEDGL-MAVDYFTF--SSSIAD 81 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~-~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~--~~~~~~-~nv~v~~~--~~~~~~ 81 (178)
.+++.|++..|+.. .+.. .+.. .++++.|.+.++ ++++..|+.+.+.... ...... ..+.+.+- +.++..
T Consensus 103 ~~~~~i~i~~~a~~~~k~wp~e~~--~~l~~~l~~~~~-~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~a 179 (247)
T PF01075_consen 103 KDKPYIGINPGASWPSKRWPAEKW--AELIERLKERGY-RVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAA 179 (247)
T ss_dssp TTSSEEEEE---SSGGGS--HHHH--HHHHHHHCCCT--EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHH
T ss_pred ccCCeEEEeecCCCccccCCHHHH--HHHHHHHHhhCc-eEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHH
Confidence 45788888888642 2211 1122 222456655554 6766655554111110 000011 12333332 356789
Q ss_pred HhhhccEEEecCChHHHHHHHHcCCCEEEEe
Q 042754 82 HLRSASLVISHAGSGSIFETLRHGKPLIVVV 112 (178)
Q Consensus 82 ~~~~adlvIshaG~~Ti~E~l~~g~P~iviP 112 (178)
++..||++|+-=. |.+.=|.+.|+|+|.+-
T Consensus 180 li~~a~~~I~~Dt-g~~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 180 LISRADLVIGNDT-GPMHLAAALGTPTVALF 209 (247)
T ss_dssp HHHTSSEEEEESS-HHHHHHHHTT--EEEEE
T ss_pred HHhcCCEEEecCC-hHHHHHHHHhCCEEEEe
Confidence 9999999999755 88999999999999984
No 145
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.61 E-value=5.4 Score=35.48 Aligned_cols=113 Identities=15% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCCcEEEEEeCCc--cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--------ccccCCcceEEEEeCh--
Q 042754 9 SLKRIVFVTVGTT--CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--------SLGEDGLMAVDYFTFS-- 76 (178)
Q Consensus 9 ~~~~~ilVt~Gs~--~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--------~~~~~~~~nv~v~~~~-- 76 (178)
++.-+||++++.. --+++++.. ...|+.-+ ..+++.-|........ ..+ -...++++.+-.
T Consensus 427 p~~avVf~c~~n~~K~~pev~~~w-----mqIL~~vP-~Svl~L~~~~~~~~~~~~l~~la~~~G-v~~eRL~f~p~~~~ 499 (620)
T COG3914 427 PEDAVVFCCFNNYFKITPEVFALW-----MQILSAVP-NSVLLLKAGGDDAEINARLRDLAEREG-VDSERLRFLPPAPN 499 (620)
T ss_pred CCCeEEEEecCCcccCCHHHHHHH-----HHHHHhCC-CcEEEEecCCCcHHHHHHHHHHHHHcC-CChhheeecCCCCC
Confidence 4456788887753 234566655 23444433 2566665553221111 011 112455555544
Q ss_pred hhHHHHhhhccEEEe---cCChHHHHHHHHcCCCEEEEeCCCCCCchHHH--H-HHHHHhCCCE
Q 042754 77 SSIADHLRSASLVIS---HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSE--L-AEELAARKHL 134 (178)
Q Consensus 77 ~~~~~~~~~adlvIs---haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~--n-A~~l~~~G~~ 134 (178)
+++.+.+.-||+|.- =+|++|.+|+|.+|+|+|..+ ++|+. | +..+...|.-
T Consensus 500 ~~h~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~~------G~~FasR~~~si~~~agi~ 557 (620)
T COG3914 500 EDHRARYGIADLVLDTYPYGGHTTASDALWMGVPVLTRV------GEQFASRNGASIATNAGIP 557 (620)
T ss_pred HHHHHhhchhheeeecccCCCccchHHHHHhcCceeeec------cHHHHHhhhHHHHHhcCCc
Confidence 347788899999975 489999999999999999754 45663 2 3344445654
No 146
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=91.59 E-value=0.37 Score=42.34 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=53.1
Q ss_pred ceEEEEeChh--hHHHHhhhccEEEecC---ChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh--CCCEEEeChh
Q 042754 68 MAVDYFTFSS--SIADHLRSASLVISHA---GSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA--RKHLYCAHPQ 140 (178)
Q Consensus 68 ~nv~v~~~~~--~~~~~~~~adlvIsha---G~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~--~G~~~~~~~~ 140 (178)
..|.+.+|.+ ++...+..+.++|.-+ |.+|.+||+.+|+|+| .+. ....+.. .|+. +.+.+
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqI--nyg---------~~~~V~d~~NG~l-i~d~~ 476 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQI--NKV---------ETDYVEHNKNGYI-IDDIS 476 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCee--ecC---------CceeeEcCCCcEE-eCCHH
Confidence 4788889988 8999999999999865 7779999999999999 221 0112222 3443 36888
Q ss_pred hHHHHHHccC
Q 042754 141 SLHQVIAGMD 150 (178)
Q Consensus 141 ~L~~~i~~l~ 150 (178)
+|.++|..++
T Consensus 477 ~l~~al~~~L 486 (519)
T TIGR03713 477 ELLKALDYYL 486 (519)
T ss_pred HHHHHHHHHH
Confidence 8888887775
No 147
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=91.12 E-value=2.3 Score=34.64 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=26.0
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~ 113 (178)
+.|+||+.++..+.+-+-.+|+|.|.+-+
T Consensus 93 ~pDlVi~d~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 93 NPDLIISDFEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CCCEEEECCchHHHHHHHhcCCCEEEEec
Confidence 45999999999999999999999997654
No 148
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=90.85 E-value=1.9 Score=35.18 Aligned_cols=101 Identities=12% Similarity=0.126 Sum_probs=55.5
Q ss_pred CCcEEEEEeCCc-c-HHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEE-EEe--ChhhHHHHh
Q 042754 10 LKRIVFVTVGTT-C-FDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVD-YFT--FSSSIADHL 83 (178)
Q Consensus 10 ~~~~ilVt~Gs~-~-~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~-v~~--~~~~~~~~~ 83 (178)
++|.|.+-.|+. + .+.. .+.. .++++.+...++ ++++.-|+.+...........+.++. +.+ -+.++..++
T Consensus 173 ~~~~i~i~pga~~~~~K~Wp~e~~--~~li~~l~~~~~-~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali 249 (334)
T TIGR02195 173 ERPIIAFCPGAEFGPAKRWPHEHY--AELAKRLIDQGY-QVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLI 249 (334)
T ss_pred CCCEEEEcCCCCCCccCCCCHHHH--HHHHHHHHHCCC-EEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHH
Confidence 467888877763 2 2211 1111 112344444465 76665444432111100000111111 222 235788999
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
+.||++|+-=. |.+.=|.+.|+|.|.+--+
T Consensus 250 ~~a~l~I~~DS-Gp~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 250 ALAKAVVTNDS-GLMHVAAALNRPLVALYGS 279 (334)
T ss_pred HhCCEEEeeCC-HHHHHHHHcCCCEEEEECC
Confidence 99999999755 7889999999999987433
No 149
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=90.43 E-value=5.4 Score=32.27 Aligned_cols=32 Identities=25% Similarity=0.163 Sum_probs=21.3
Q ss_pred HHHHhhh--ccEEEecCChHHHH---HHHHcCCCEEE
Q 042754 79 IADHLRS--ASLVISHAGSGSIF---ETLRHGKPLIV 110 (178)
Q Consensus 79 ~~~~~~~--adlvIshaG~~Ti~---E~l~~g~P~iv 110 (178)
+..++.. -|+||+|.+...+. -+...|+|.|.
T Consensus 82 l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~ 118 (348)
T TIGR01133 82 ARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLFH 118 (348)
T ss_pred HHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEEE
Confidence 4444554 89999998765433 34557889975
No 150
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=90.41 E-value=6.2 Score=29.70 Aligned_cols=68 Identities=19% Similarity=0.198 Sum_probs=41.7
Q ss_pred HHHHhhhccEEEec-CChHHHHHHHH---------cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE---------EeCh
Q 042754 79 IADHLRSASLVISH-AGSGSIFETLR---------HGKPLIVVVNEDLMDNHQSELAEELAARKHLY---------CAHP 139 (178)
Q Consensus 79 ~~~~~~~adlvIsh-aG~~Ti~E~l~---------~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~---------~~~~ 139 (178)
...++..||.+|.- ||.||+.|.+. +.+|.+++-.... -++-...-+.+.+.|+.- +-++
T Consensus 90 k~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~-~~~l~~~l~~~~~~gfi~~~~~~~~~~~d~~ 168 (178)
T TIGR00730 90 KAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGH-FDGLVEWLKYSIQEGFISESHLKLIHVVSRP 168 (178)
T ss_pred HHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcch-HHHHHHHHHHHHHCCCCCHHHcCcEEEcCCH
Confidence 44566889987654 66789888754 4899998742211 123333445677777642 2266
Q ss_pred hhHHHHHH
Q 042754 140 QSLHQVIA 147 (178)
Q Consensus 140 ~~L~~~i~ 147 (178)
+++.+.|+
T Consensus 169 ~e~~~~i~ 176 (178)
T TIGR00730 169 DELIEQVQ 176 (178)
T ss_pred HHHHHHHH
Confidence 66666664
No 151
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.25 E-value=6 Score=32.03 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=48.6
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh----------------
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS---------------- 76 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~---------------- 76 (178)
+||+++|+.|.. +...+ .+.+.|.+.++ ++.++|+........... ....+...++.
T Consensus 1 ~~~~~~~~~gG~-~~~~~---~la~~l~~~G~-ev~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (350)
T cd03785 1 RILIAGGGTGGH-IFPAL---ALAEELRERGA-EVLFLGTKRGLEARLVPK--AGIPLHTIPVGGLRRKGSLKKLKAPFK 73 (350)
T ss_pred CEEEEecCchhh-hhHHH---HHHHHHHhCCC-EEEEEECCCcchhhcccc--cCCceEEEEecCcCCCChHHHHHHHHH
Confidence 478888876532 22221 22456777786 888887764321111100 01122222211
Q ss_pred -----hhHHHHhhh--ccEEEecCChHH---HHHHHHcCCCEEEEe
Q 042754 77 -----SSIADHLRS--ASLVISHAGSGS---IFETLRHGKPLIVVV 112 (178)
Q Consensus 77 -----~~~~~~~~~--adlvIshaG~~T---i~E~l~~g~P~iviP 112 (178)
..+..++.. -|+|++|.+..+ ..-+...|+|.++..
T Consensus 74 ~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~ 119 (350)
T cd03785 74 LLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE 119 (350)
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEc
Confidence 113344554 799999976433 334556799998754
No 152
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.19 E-value=0.52 Score=38.87 Aligned_cols=99 Identities=17% Similarity=0.231 Sum_probs=55.4
Q ss_pred CcEEEEEeC-CccH-HHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-cccccCCcceEEEEe--ChhhHHHHhh
Q 042754 11 KRIVFVTVG-TTCF-DAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-KSLGEDGLMAVDYFT--FSSSIADHLR 84 (178)
Q Consensus 11 ~~~ilVt~G-s~~~-~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~~~~~~~~~nv~v~~--~~~~~~~~~~ 84 (178)
+|.|++.-| |.+. +.. .+.. .+.++.+...++ +|++..|+ ..... .......+..+.+.+ -+.++..+++
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~--~~l~~~l~~~~~-~Vvl~g~~-~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~ 250 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHY--AELAELLIAKGY-QVVLFGGP-DEEERAEEIAKGLPNAVILAGKTSLEELAALIA 250 (334)
T ss_pred CCeEEEeccccccccCCCCHHHH--HHHHHHHHHCCC-EEEEecCh-HHHHHHHHHHHhcCCccccCCCCCHHHHHHHHh
Confidence 588999888 5432 111 1111 122445555553 55554444 32111 110001111111222 3457889999
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.||++|+-=. |-+.=|.+.|+|.|.+--+
T Consensus 251 ~a~l~I~~DS-g~~HlAaA~~~P~I~iyg~ 279 (334)
T COG0859 251 GADLVIGNDS-GPMHLAAALGTPTIALYGP 279 (334)
T ss_pred cCCEEEccCC-hHHHHHHHcCCCEEEEECC
Confidence 9999999655 7888899999999998533
No 153
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=89.96 E-value=3 Score=34.40 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=56.3
Q ss_pred CcEEEEEeCCc-cHHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc--c--ccccCCcceEEEEeC--hhhHHHH
Q 042754 11 KRIVFVTVGTT-CFDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT--K--SLGEDGLMAVDYFTF--SSSIADH 82 (178)
Q Consensus 11 ~~~ilVt~Gs~-~~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~--~--~~~~~~~~nv~v~~~--~~~~~~~ 82 (178)
++.|++-.|+. ..+.. .+.. .++++.|.+.++ ++++..|+++.+.. . ......+..+.+.+. +.++..+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~f--a~l~~~L~~~~~-~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~al 259 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKF--SAVIDALQARGY-EVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGAL 259 (352)
T ss_pred CCeEEEecCCCccccCCCHHHH--HHHHHHHHHCCC-eEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHH
Confidence 56787777764 22211 1111 112345555576 88777776542211 1 000001111222232 4578899
Q ss_pred hhhccEEEecCChHHHHHHHHcCCCEEEEe
Q 042754 83 LRSASLVISHAGSGSIFETLRHGKPLIVVV 112 (178)
Q Consensus 83 ~~~adlvIshaG~~Ti~E~l~~g~P~iviP 112 (178)
|+.||++|+.=. |.+.=|.++|+|.|.+-
T Consensus 260 i~~a~l~v~nDS-Gp~HlAaA~g~P~v~lf 288 (352)
T PRK10422 260 IDHAQLFIGVDS-APAHIAAAVNTPLICLF 288 (352)
T ss_pred HHhCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 999999999755 78999999999999874
No 154
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=89.88 E-value=3.6 Score=31.76 Aligned_cols=74 Identities=15% Similarity=0.221 Sum_probs=49.6
Q ss_pred ceEEEEeChh--hHHHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC--CCEEEe--
Q 042754 68 MAVDYFTFSS--SIADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR--KHLYCA-- 137 (178)
Q Consensus 68 ~nv~v~~~~~--~~~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~--G~~~~~-- 137 (178)
.++...++.+ ++..++..||+++.- +-+.++.|++++|+|.|.-... ...+.+.+. |. +..
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~--------~~~e~~~~~~~g~-~~~~~ 327 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVG--------GIPEVVEDGETGL-LVPPG 327 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEECCCC--------ChHHHhcCCCceE-ecCCC
Confidence 5677778876 577888989999987 2235579999999999865443 123333333 44 322
Q ss_pred ChhhHHHHHHccC
Q 042754 138 HPQSLHQVIAGMD 150 (178)
Q Consensus 138 ~~~~L~~~i~~l~ 150 (178)
+.+.+.+++..+.
T Consensus 328 ~~~~~~~~i~~~~ 340 (381)
T COG0438 328 DVEELADALEQLL 340 (381)
T ss_pred CHHHHHHHHHHHh
Confidence 3677888877664
No 155
>PRK05920 aromatic acid decarboxylase; Validated
Probab=89.15 E-value=5.7 Score=30.60 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=36.1
Q ss_pred hccEE-EecCChHHHH----------------HHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 85 SASLV-ISHAGSGSIF----------------ETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 85 ~adlv-IshaG~~Ti~----------------E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
.+|++ |.-|-++|+. +++..++|.+++|.......-...|.+.|.+.|+.+.
T Consensus 93 ~aD~~vVaPaTantlakiA~GiaD~ll~~~a~~~L~~~~pvvi~P~~m~~~~~~~~nl~~L~~~G~~ii 161 (204)
T PRK05920 93 RTDGMVIAPCSMGTLAAIAHGLSDNLIERAADVVLKERRKLILVPRETPLSLIHLENMLKLAEAGAIIL 161 (204)
T ss_pred ccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEe
Confidence 46644 6666666553 5678999999999743222223579999999998763
No 156
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=88.78 E-value=4.6 Score=34.79 Aligned_cols=75 Identities=8% Similarity=0.162 Sum_probs=52.4
Q ss_pred ceEEEEe-Chh-hHHHHhhhccEE--Eec--CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChh
Q 042754 68 MAVDYFT-FSS-SIADHLRSASLV--ISH--AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQ 140 (178)
Q Consensus 68 ~nv~v~~-~~~-~~~~~~~~adlv--Ish--aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~ 140 (178)
.|+..++ |.+ ++.+++..||+. |+| +-..++.||+..|+|++..=...+ .+. ...+ |..+. .+++
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~---~~~----~i~~-g~l~~~~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAH---NRD----FIAS-ENIFEHNEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccC---Ccc----cccC-CceecCCCHH
Confidence 5776665 466 799999999987 444 445799999999999998765432 122 2222 55543 4778
Q ss_pred hHHHHHHccC
Q 042754 141 SLHQVIAGMD 150 (178)
Q Consensus 141 ~L~~~i~~l~ 150 (178)
.+.++|.+++
T Consensus 400 ~m~~~i~~lL 409 (438)
T TIGR02919 400 QLISKLKDLL 409 (438)
T ss_pred HHHHHHHHHh
Confidence 8888887774
No 157
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=87.59 E-value=5.8 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=31.5
Q ss_pred hhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEe
Q 042754 76 SSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVV 112 (178)
Q Consensus 76 ~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP 112 (178)
+.++..+++.||++||.=. |.+.=|.+.|+|.|.+-
T Consensus 251 L~el~ali~~a~l~Vs~DS-Gp~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 251 LPQLAALIDHARLFIGVDS-VPMHMAAALGTPLVALF 286 (344)
T ss_pred HHHHHHHHHhCCEEEecCC-HHHHHHHHcCCCEEEEE
Confidence 4578999999999999744 88999999999999874
No 158
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.59 E-value=3.3 Score=34.08 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=31.4
Q ss_pred hhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeC
Q 042754 76 SSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 76 ~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~ 113 (178)
+.++..+++.||++|+-= .|.+.=|.+.|+|.|.+--
T Consensus 252 L~el~ali~~a~l~I~nD-TGp~HlAaA~g~P~valfG 288 (348)
T PRK10916 252 LEQAVILIAACKAIVTND-SGLMHVAAALNRPLVALYG 288 (348)
T ss_pred HHHHHHHHHhCCEEEecC-ChHHHHHHHhCCCEEEEEC
Confidence 356888999999999964 4889999999999998743
No 159
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=85.88 E-value=16 Score=29.20 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=36.9
Q ss_pred hHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 042754 78 SIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL 134 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~ 134 (178)
++-.+++.||++|+.==+ .+.=++.+|+|.+.+++. ......+.+.|.-
T Consensus 243 e~~~~i~~~~~vI~~RlH-~~I~A~~~gvP~i~i~y~-------~K~~~~~~~~g~~ 291 (298)
T TIGR03609 243 ELLGLFASARLVIGMRLH-ALILAAAAGVPFVALSYD-------PKVRAFAADAGVP 291 (298)
T ss_pred HHHHHHhhCCEEEEechH-HHHHHHHcCCCEEEeecc-------HHHHHHHHHhCCC
Confidence 567889999999996544 456688899999988652 3666677777754
No 160
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=85.73 E-value=12 Score=27.34 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=49.9
Q ss_pred EEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhhhccEEE
Q 042754 14 VFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLRSASLVI 90 (178)
Q Consensus 14 ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~~adlvI 90 (178)
|+|++||...+ .+.+. |...+. +++..+=+...... ....++...++.+ .+...+..||.||
T Consensus 1 I~V~GatG~vG~~l~~~---------L~~~~~-~V~~~~R~~~~~~~-----~~~~~~~~~d~~d~~~~~~al~~~d~vi 65 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQ---------LLRRGH-EVTALVRSPSKAED-----SPGVEIIQGDLFDPDSVKAALKGADAVI 65 (183)
T ss_dssp EEEETTTSHHHHHHHHH---------HHHTTS-EEEEEESSGGGHHH-----CTTEEEEESCTTCHHHHHHHHTTSSEEE
T ss_pred eEEECCCChHHHHHHHH---------HHHCCC-EEEEEecCchhccc-----ccccccceeeehhhhhhhhhhhhcchhh
Confidence 67888765322 33333 334565 77776644322111 1122333344432 4778889999999
Q ss_pred ecCC--------hHHHHHHH-HcCCCEEEEeC
Q 042754 91 SHAG--------SGSIFETL-RHGKPLIVVVN 113 (178)
Q Consensus 91 shaG--------~~Ti~E~l-~~g~P~iviP~ 113 (178)
+-.| .-++.+++ ..|++-+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s 97 (183)
T PF13460_consen 66 HAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLS 97 (183)
T ss_dssp ECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred hhhhhhcccccccccccccccccccccceeee
Confidence 9998 55666665 56888887643
No 161
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=85.58 E-value=11 Score=29.88 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=32.7
Q ss_pred ceEEEE--eChhhHHHHh---hhccEEEecCChHH-----HHHHHHcCCCEEEEeCCC
Q 042754 68 MAVDYF--TFSSSIADHL---RSASLVISHAGSGS-----IFETLRHGKPLIVVVNED 115 (178)
Q Consensus 68 ~nv~v~--~~~~~~~~~~---~~adlvIshaG~~T-----i~E~l~~g~P~iviP~~~ 115 (178)
.++... ||..+++..| -.+|++||+-.+++ +.-|..+|+|+|+|=+|.
T Consensus 172 ~~iia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 229 (249)
T PF02571_consen 172 KNIIAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPP 229 (249)
T ss_pred hhEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 344433 5655544443 47899999966555 445788999999998774
No 162
>PRK09620 hypothetical protein; Provisional
Probab=85.30 E-value=8.4 Score=30.16 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=39.2
Q ss_pred CcEEEEEeCCc-c------------HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-
Q 042754 11 KRIVFVTVGTT-C------------FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS- 76 (178)
Q Consensus 11 ~~~ilVt~Gs~-~------------~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~- 76 (178)
.+.||||.|.. - .+.+-..+ .+.+...++ +|+++.|.....+... +.++....+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~L-----A~~L~~~Ga-~V~li~g~~~~~~~~~-----~~~~~~~~V~s 71 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRII-----AEELISKGA-HVIYLHGYFAEKPNDI-----NNQLELHPFEG 71 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHH-----HHHHHHCCC-eEEEEeCCCcCCCccc-----CCceeEEEEec
Confidence 46789998842 0 12344444 345556786 8999988754211110 1122222221
Q ss_pred -----hhHHHHhh--hccEEEecCCh
Q 042754 77 -----SSIADHLR--SASLVISHAGS 95 (178)
Q Consensus 77 -----~~~~~~~~--~adlvIshaG~ 95 (178)
..+.+++. .+|+|||-|..
T Consensus 72 ~~d~~~~l~~~~~~~~~D~VIH~AAv 97 (229)
T PRK09620 72 IIDLQDKMKSIITHEKVDAVIMAAAG 97 (229)
T ss_pred HHHHHHHHHHHhcccCCCEEEECccc
Confidence 22444453 57999988775
No 163
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=85.29 E-value=6.8 Score=33.07 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=47.8
Q ss_pred cceEEEEeChhh--HHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCC
Q 042754 67 LMAVDYFTFSSS--IADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARK 132 (178)
Q Consensus 67 ~~nv~v~~~~~~--~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G 132 (178)
...+.+.||+++ ++.++-.||+-+-||= =|..-|..+|+|.|=-.++..-+-|-..--.++....
T Consensus 243 ~l~l~~lPF~~Q~~yD~LLw~cD~NfVRGE-DSfVRAqwAgkPFvWhIYpQ~d~aHl~KL~AFL~~y~ 309 (374)
T PF10093_consen 243 NLTLHVLPFVPQDDYDRLLWACDFNFVRGE-DSFVRAQWAGKPFVWHIYPQEDDAHLDKLDAFLDRYC 309 (374)
T ss_pred CeEEEECCCCCHHHHHHHHHhCccceEecc-hHHHHHHHhCCCceEecCcCchhhHHHHHHHHHHHHh
Confidence 456888999964 9999999999999955 7999999999999987666322233333334444443
No 164
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=85.19 E-value=16 Score=28.43 Aligned_cols=48 Identities=8% Similarity=0.149 Sum_probs=34.9
Q ss_pred hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHH
Q 042754 95 SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQ 144 (178)
Q Consensus 95 ~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~ 144 (178)
..|+..++..|+|+.++|-. ..+.+..-...|-+.|+....+.+++.+
T Consensus 171 l~ta~~A~~~gr~v~~~pg~--~~~~~~~G~~~Li~~GA~~i~~~~d~~~ 218 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGD--LNSPESDGCHKLIEQGAALITSAKDILE 218 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCC--CCCccchHHHHHHHCCCEEECCHHHHHH
Confidence 35677788999999999865 3344555566777889877777777654
No 165
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=85.13 E-value=1.8 Score=37.37 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=43.7
Q ss_pred hhHHHHhhhccEEEecC---C-hHHHHHHHHcCCC----EEEEeCCCCCCchHHHHHHHHHhCCCEE-EeChhhHHHHHH
Q 042754 77 SSIADHLRSASLVISHA---G-SGSIFETLRHGKP----LIVVVNEDLMDNHQSELAEELAARKHLY-CAHPQSLHQVIA 147 (178)
Q Consensus 77 ~~~~~~~~~adlvIsha---G-~~Ti~E~l~~g~P----~iviP~~~~~~~~Q~~nA~~l~~~G~~~-~~~~~~L~~~i~ 147 (178)
+++..+|+.||+++.-+ | ..++.|++++|+| .|+--... .++.+. .|+.+ ..+++.++++|.
T Consensus 347 ~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G--------~~~~l~-~gllVnP~d~~~lA~aI~ 417 (456)
T TIGR02400 347 EELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAG--------AAQELN-GALLVNPYDIDGMADAIA 417 (456)
T ss_pred HHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCC--------ChHHhC-CcEEECCCCHHHHHHHHH
Confidence 46899999999999743 4 4688999999999 66433321 112222 22222 137889999998
Q ss_pred ccC
Q 042754 148 GMD 150 (178)
Q Consensus 148 ~l~ 150 (178)
+++
T Consensus 418 ~aL 420 (456)
T TIGR02400 418 RAL 420 (456)
T ss_pred HHH
Confidence 874
No 166
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.41 E-value=2.1 Score=35.16 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=27.1
Q ss_pred HHhhhccEEEecCChHHHHHHHHc----CCCEEEEeC
Q 042754 81 DHLRSASLVISHAGSGSIFETLRH----GKPLIVVVN 113 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP~ 113 (178)
.....+|++|+=||=||+..+... ++|.+-|..
T Consensus 68 ~~~~~~D~vi~lGGDGT~L~aar~~~~~~~PilGIN~ 104 (306)
T PRK03372 68 DAADGCELVLVLGGDGTILRAAELARAADVPVLGVNL 104 (306)
T ss_pred hcccCCCEEEEEcCCHHHHHHHHHhccCCCcEEEEec
Confidence 334579999999999999998764 789888764
No 167
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=83.99 E-value=7 Score=32.20 Aligned_cols=112 Identities=13% Similarity=0.159 Sum_probs=64.1
Q ss_pred EEEEEeCCc--cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeC--CCc--ccccc-cc-cCCc-ceEEEE-eCh--hhHH
Q 042754 13 IVFVTVGTT--CFDALVKAVDTLEVKQELTRRGYTHLLIQMGR--GTY--VPTKS-LG-EDGL-MAVDYF-TFS--SSIA 80 (178)
Q Consensus 13 ~ilVt~Gs~--~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~--~~~--~~~~~-~~-~~~~-~nv~v~-~~~--~~~~ 80 (178)
.+-|..|.+ ..++-++++. .+....+.++ ++++-.|. ++. ..... .+ ...+ .++++. .+. ++..
T Consensus 146 ~~tIlvGNSgd~SN~Hie~L~---~l~~~~~~~v-~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 146 KMTILVGNSGDRSNRHIEALR---ALHQQFGDNV-KIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYL 221 (322)
T ss_pred ceEEEEeCCCCCcccHHHHHH---HHHHHhCCCe-EEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHH
Confidence 466666733 4555555541 1222234455 77777776 332 11100 00 0112 355443 232 3567
Q ss_pred HHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 81 DHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 81 ~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
.+++.||+.|-. -|.||+.-++.+|+|.++--.. .-=+.+.+.|+-+.
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n--------~fwqdl~e~gv~Vl 273 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDN--------PFWQDLTEQGLPVL 273 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCC--------chHHHHHhCCCeEE
Confidence 889999999864 5899999999999999973221 11233788898763
No 168
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=83.98 E-value=4.8 Score=33.22 Aligned_cols=30 Identities=23% Similarity=0.532 Sum_probs=23.7
Q ss_pred hccEEEecCChHHHHHHH-----HcCCCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFETL-----RHGKPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~~ 115 (178)
.+|+||.=|| |++..+. ..|+|.|.||...
T Consensus 80 ~~d~IIaiGG-Gsv~D~aK~iA~~~gip~I~VPTT~ 114 (332)
T cd08549 80 DTEFLLGIGS-GTIIDLVKFVSFKVGKPFISVPTAP 114 (332)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHcCCCEEEeCCCc
Confidence 7999999888 6666653 3599999999763
No 169
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.88 E-value=3.9 Score=33.36 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=39.5
Q ss_pred cceEEEEeChh--hHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 67 LMAVDYFTFSS--SIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 67 ~~nv~v~~~~~--~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
+.++.+.||++ ++++++-.||+-+-+|- -|..-+..+|+|.+---++
T Consensus 237 ~lrvvklPFvpqddyd~LL~lcD~n~VRGE-DSFVRAq~agkPflWHIYp 285 (370)
T COG4394 237 KLRVVKLPFVPQDDYDELLWLCDFNLVRGE-DSFVRAQLAGKPFLWHIYP 285 (370)
T ss_pred ceEEEEecCCcHhHHHHHHHhcccceeecc-hHHHHHHHcCCCcEEEecC
Confidence 34677889986 49999999999999955 8999999999999975555
No 170
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=83.63 E-value=1.9 Score=29.56 Aligned_cols=36 Identities=31% Similarity=0.651 Sum_probs=27.8
Q ss_pred hHHHHhhhccEEEe---c--CChHHHHHH---HHcCCCEEEEeCC
Q 042754 78 SIADHLRSASLVIS---H--AGSGSIFET---LRHGKPLIVVVNE 114 (178)
Q Consensus 78 ~~~~~~~~adlvIs---h--aG~~Ti~E~---l~~g~P~iviP~~ 114 (178)
++ ..|..||+||. . .+.||.+|+ .+.|+|++++-..
T Consensus 55 d~-~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 55 DL-EGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HH-HHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HH-HHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 44 78899999874 2 578999996 6799999998654
No 171
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=83.05 E-value=2.1 Score=33.36 Aligned_cols=79 Identities=16% Similarity=0.220 Sum_probs=41.5
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEe---------ChhhHH
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFT---------FSSSIA 80 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~---------~~~~~~ 80 (178)
.-+||+|+|+.|.+ .|.+.+ ...+ .-|++||.+...-...........-.+.+ ++.-+.
T Consensus 5 gnTiLITGG~sGIGl~lak~f---------~elg--N~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLk 73 (245)
T COG3967 5 GNTILITGGASGIGLALAKRF---------LELG--NTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLK 73 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHH---------HHhC--CEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHH
Confidence 35799999988765 344443 3333 56688999863111100000011111222 111233
Q ss_pred HHhhhccEEEecCChHHHHH
Q 042754 81 DHLRSASLVISHAGSGSIFE 100 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E 100 (178)
.-++.-+++|-.||..--.|
T Consensus 74 k~~P~lNvliNNAGIqr~~d 93 (245)
T COG3967 74 KEYPNLNVLINNAGIQRNED 93 (245)
T ss_pred hhCCchheeeecccccchhh
Confidence 34478899999999654333
No 172
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=83.04 E-value=15 Score=27.61 Aligned_cols=56 Identities=13% Similarity=0.084 Sum_probs=35.9
Q ss_pred HHhhhccEE-EecCChHHHHHH-------------HHc--CCCEEEEeCC---CCCCchHHHHHHHHHhCCCEEE
Q 042754 81 DHLRSASLV-ISHAGSGSIFET-------------LRH--GKPLIVVVNE---DLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 81 ~~~~~adlv-IshaG~~Ti~E~-------------l~~--g~P~iviP~~---~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
++-.++|++ |.-+-++|+.-. ++. ++|.|++|.. .....--.+|.++|.+.|+-+.
T Consensus 73 ~l~~~aD~~vIaPaTantlakiA~GiaDnllt~~~~a~~~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~vi 147 (182)
T PRK07313 73 ELAKRADLFLVAPATANTIAKLAHGIADDLVTSVALALPATTPKLIAPAMNTKMYENPATQRNLKTLKEDGVQEI 147 (182)
T ss_pred ccccccCEEEEeeCCHhHHHHHHccccCcHHHHHHHHcCCCCCEEEEECCCHHHhcCHHHHHHHHHHHHCCCEEE
Confidence 344667755 666777765443 445 8999999972 1111112468999999998754
No 173
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=82.69 E-value=4 Score=29.21 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=38.8
Q ss_pred HHHhhhccEEEecCC-----hHHHHH---HHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHH
Q 042754 80 ADHLRSASLVISHAG-----SGSIFE---TLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIA 147 (178)
Q Consensus 80 ~~~~~~adlvIshaG-----~~Ti~E---~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~ 147 (178)
..+|..||+||-+=| .|+.+. ++++|+|.|++-.+. ++-. -+.+...-.+++-+++...+.|+
T Consensus 67 ~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~----~~Hp-LKEvda~A~a~~et~~Qvv~iL~ 137 (141)
T PF11071_consen 67 RTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEE----LHHP-LKEVDAAALAVAETPEQVVEILR 137 (141)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchh----cccc-HHHHhHhhHhhhCCHHHHHHHHH
Confidence 578999999999988 345554 578999999885432 2111 11122222234457776666554
No 174
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=82.43 E-value=25 Score=28.63 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=22.3
Q ss_pred HHHhhh--ccEEEecCChHHHH---HHHHcCCCEEEEeC
Q 042754 80 ADHLRS--ASLVISHAGSGSIF---ETLRHGKPLIVVVN 113 (178)
Q Consensus 80 ~~~~~~--adlvIshaG~~Ti~---E~l~~g~P~iviP~ 113 (178)
..++.. .|+|++|.....+. -+...++|.|....
T Consensus 84 ~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~ 122 (357)
T PRK00726 84 RKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQ 122 (357)
T ss_pred HHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcC
Confidence 344544 79999997544333 34567899987643
No 175
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=82.35 E-value=5.8 Score=33.82 Aligned_cols=75 Identities=19% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--eCh--hhHHHHhh
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF--TFS--SSIADHLR 84 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~--~~~--~~~~~~~~ 84 (178)
..++++||+||.|.+. +.+ .+.+.+. ++++.............. ...++..+ +.. .++.+.+.
T Consensus 177 ~gK~VLITGASgGIG~aLA~---------~La~~G~-~Vi~l~r~~~~l~~~~~~--~~~~v~~v~~Dvsd~~~v~~~l~ 244 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLK---------ELHQQGA-KVVALTSNSDKITLEING--EDLPVKTLHWQVGQEAALAELLE 244 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHH---------HHHHCCC-EEEEEeCCHHHHHHHHhh--cCCCeEEEEeeCCCHHHHHHHhC
Confidence 4578999999886653 333 3345575 776654332211110000 01122222 222 23566778
Q ss_pred hccEEEecCChH
Q 042754 85 SASLVISHAGSG 96 (178)
Q Consensus 85 ~adlvIshaG~~ 96 (178)
..|++|+.+|.+
T Consensus 245 ~IDiLInnAGi~ 256 (406)
T PRK07424 245 KVDILIINHGIN 256 (406)
T ss_pred CCCEEEECCCcC
Confidence 899999999864
No 176
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=82.10 E-value=2.9 Score=33.30 Aligned_cols=34 Identities=32% Similarity=0.553 Sum_probs=21.4
Q ss_pred hccEEEecCChHHHHHH-----HHcCCCEEEEeCCCCCCc
Q 042754 85 SASLVISHAGSGSIFET-----LRHGKPLIVVVNEDLMDN 119 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~~~~~~ 119 (178)
.+|++|.=|| ||+... -..|+|.+.||...+.|+
T Consensus 75 ~~d~ii~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG 113 (250)
T PF13685_consen 75 DADLIIGVGG-GTIIDIAKYAAFELGIPFISVPTAASHDG 113 (250)
T ss_dssp T--EEEEEES-HHHHHHHHHHHHHHT--EEEEES--SSGG
T ss_pred CCCEEEEeCC-cHHHHHHHHHHHhcCCCEEEecccccccc
Confidence 6789999766 788765 458999999998754443
No 177
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=81.37 E-value=3 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.435 Sum_probs=25.3
Q ss_pred hhccEEEecCChHHHHHHHH------cCCCEEEEeC
Q 042754 84 RSASLVISHAGSGSIFETLR------HGKPLIVVVN 113 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~------~g~P~iviP~ 113 (178)
..+|++|+-||=||+..++. .++|.+-|..
T Consensus 34 ~~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 34 KNPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 46899999999999999986 4789887754
No 178
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=80.72 E-value=5.6 Score=33.51 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=22.6
Q ss_pred hhccEEEecCChHHHHHHH---H--c------------------CCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---R--H------------------GKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~--~------------------g~P~iviP~~ 114 (178)
..+|+||.=|| |+++.+. + + ++|.|.||..
T Consensus 78 ~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 78 AGPDVIIGLGG-GSCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 47899999877 6666543 1 1 7899999976
No 179
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=80.63 E-value=7.2 Score=31.90 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=23.0
Q ss_pred hhccEEEecCChHHHHHHHH-----c--CCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLR-----H--GKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~-----~--g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++.- + |+|.|.||..
T Consensus 77 ~~~d~IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 77 AEVDAVIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred cCcCEEEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 36899999877 66666532 3 9999999975
No 180
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=80.35 E-value=19 Score=30.63 Aligned_cols=55 Identities=20% Similarity=0.168 Sum_probs=37.1
Q ss_pred HHhhhccEE-EecCChHHHHHH-------------HHcCCCEEEEeCCC---CCCchHHHHHHHHHhCCCEE
Q 042754 81 DHLRSASLV-ISHAGSGSIFET-------------LRHGKPLIVVVNED---LMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 81 ~~~~~adlv-IshaG~~Ti~E~-------------l~~g~P~iviP~~~---~~~~~Q~~nA~~l~~~G~~~ 135 (178)
++..++|++ |.-|-++|+.-. ++.++|.+++|... ....--.+|..+|.+.|+-+
T Consensus 78 ~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~G~~i 149 (399)
T PRK05579 78 ELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRSRGVEI 149 (399)
T ss_pred hcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHHCCCEE
Confidence 555678865 677777776654 55789999999321 11111246999999999876
No 181
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.08 E-value=4.5 Score=32.94 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.9
Q ss_pred HHhhhccEEEecCChHHHHHHHH----cCCCEEEEeC
Q 042754 81 DHLRSASLVISHAGSGSIFETLR----HGKPLIVVVN 113 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~ 113 (178)
++...+|++|+=||=||+..++. .++|++-|-.
T Consensus 60 ~~~~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGIN~ 96 (292)
T PRK01911 60 ELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINT 96 (292)
T ss_pred hcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEec
Confidence 44457999999999999999887 3789887754
No 182
>PRK10586 putative oxidoreductase; Provisional
Probab=79.51 E-value=11 Score=31.53 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=22.1
Q ss_pred hhccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++.+. ..++|.|.||..
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeCC
Confidence 35799999887 5555543 248999999975
No 183
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.42 E-value=3.7 Score=33.63 Aligned_cols=33 Identities=24% Similarity=0.478 Sum_probs=26.9
Q ss_pred HHhhhccEEEecCChHHHHHHHHc----CCCEEEEeC
Q 042754 81 DHLRSASLVISHAGSGSIFETLRH----GKPLIVVVN 113 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP~ 113 (178)
.+-..+|++|+=||=||+..+... ++|.+-|-.
T Consensus 64 ~~~~~~Dlvi~iGGDGTlL~aar~~~~~~iPilGIN~ 100 (305)
T PRK02649 64 GFDSSMKFAIVLGGDGTVLSAARQLAPCGIPLLTINT 100 (305)
T ss_pred hcccCcCEEEEEeCcHHHHHHHHHhcCCCCcEEEEeC
Confidence 344579999999999999999774 789888754
No 184
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=79.33 E-value=22 Score=26.08 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=25.0
Q ss_pred HHHhhhccEEEec-CChHHHH---HHHHcCCCEEEEeCC
Q 042754 80 ADHLRSASLVISH-AGSGSIF---ETLRHGKPLIVVVNE 114 (178)
Q Consensus 80 ~~~~~~adlvIsh-aG~~Ti~---E~l~~g~P~iviP~~ 114 (178)
..++..||.+|.- ||.||+. |++.+++|.++++..
T Consensus 86 ~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 86 FILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred HHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEECC
Confidence 3455778877654 5666655 567899999999865
No 185
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=79.32 E-value=1.7 Score=37.27 Aligned_cols=98 Identities=15% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEEEEeCCc-cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEEe
Q 042754 13 IVFVTVGTT-CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVIS 91 (178)
Q Consensus 13 ~ilVt~Gs~-~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvIs 91 (178)
+-+|++|+. |-..|++++. ....+.+...|- ++|++.....+...+. + +.-.++-+.+|+.+++.=....++.=.
T Consensus 246 vTlIvGGGyHGKSTLL~Ale-~GVYnHipGDGR-E~VVT~~~avkirAED-G-R~V~~vDISpFI~~LP~g~dT~~FsT~ 321 (448)
T PF09818_consen 246 VTLIVGGGYHGKSTLLEALE-RGVYNHIPGDGR-EFVVTDPDAVKIRAED-G-RSVEGVDISPFINNLPGGKDTTCFSTE 321 (448)
T ss_pred EEEEECCCCccHHHHHHHHH-hcccCCCCCCCc-eEEEECCCceEEEecC-C-ceEeCccchHHHhhCCCCCCCCccccc
Confidence 556777765 6667887773 333444444443 6776655544333221 1 112356677888777665555555544
Q ss_pred cCChH-----HHHHHHHcCCCEEEEeCC
Q 042754 92 HAGSG-----SIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 92 haG~~-----Ti~E~l~~g~P~iviP~~ 114 (178)
.|.+. .++|++..|.+.++|--.
T Consensus 322 ~ASGSTSqAAnI~EAlE~Ga~~LLiDED 349 (448)
T PF09818_consen 322 NASGSTSQAANIMEALEAGARLLLIDED 349 (448)
T ss_pred CCCchHHHHHHHHHHHHcCCCEEEEcCc
Confidence 44433 478999999999988543
No 186
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=79.29 E-value=4.5 Score=32.91 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=26.3
Q ss_pred HHhhhccEEEecCChHHHHHHHHc----CCCEEEEeC
Q 042754 81 DHLRSASLVISHAGSGSIFETLRH----GKPLIVVVN 113 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP~ 113 (178)
++-..+|++|+-||=||+.+++.. ++|.+-|-.
T Consensus 59 ~~~~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGIn~ 95 (291)
T PRK02155 59 EIGARADLAVVLGGDGTMLGIGRQLAPYGVPLIGINH 95 (291)
T ss_pred HhccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcC
Confidence 333578999999999999999773 678887653
No 187
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=79.02 E-value=25 Score=29.29 Aligned_cols=76 Identities=9% Similarity=-0.038 Sum_probs=37.5
Q ss_pred CCCCCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHH
Q 042754 6 DSVSLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADH 82 (178)
Q Consensus 6 ~~~~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~ 82 (178)
...+.+++||||+|+.-.+ .+.+. |...++ +|+.+.=.... ..... .....+...+.. ..+...
T Consensus 16 ~~~~~~~~IlVtGgtGfIG~~l~~~---------L~~~G~-~V~~v~r~~~~-~~~~~--~~~~~~~~~Dl~d~~~~~~~ 82 (370)
T PLN02695 16 YWPSEKLRICITGAGGFIASHIARR---------LKAEGH-YIIASDWKKNE-HMSED--MFCHEFHLVDLRVMENCLKV 82 (370)
T ss_pred CCCCCCCEEEEECCccHHHHHHHHH---------HHhCCC-EEEEEEecccc-ccccc--cccceEEECCCCCHHHHHHH
Confidence 4556778999999864222 33333 334565 66554321111 01000 001122222332 234556
Q ss_pred hhhccEEEecCC
Q 042754 83 LRSASLVISHAG 94 (178)
Q Consensus 83 ~~~adlvIshaG 94 (178)
+..+|.|||-++
T Consensus 83 ~~~~D~Vih~Aa 94 (370)
T PLN02695 83 TKGVDHVFNLAA 94 (370)
T ss_pred HhCCCEEEEccc
Confidence 678999999885
No 188
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=79.01 E-value=37 Score=29.73 Aligned_cols=56 Identities=11% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHhhhccEE-EecCChHHHHH-------------HHHcCCCEEEEeCCCCC---CchHHHHHHHHHhCCCEE
Q 042754 80 ADHLRSASLV-ISHAGSGSIFE-------------TLRHGKPLIVVVNEDLM---DNHQSELAEELAARKHLY 135 (178)
Q Consensus 80 ~~~~~~adlv-IshaG~~Ti~E-------------~l~~g~P~iviP~~~~~---~~~Q~~nA~~l~~~G~~~ 135 (178)
-++-.+||++ |.-|-++|+.- +++.++|.+++|..... ..--..|...|.+.|+-+
T Consensus 141 i~la~~aD~~vVAPATANTIAKiA~GiADnLlt~v~La~~~PvliaPaMN~~M~~npat~~Nl~~L~~~G~~v 213 (475)
T PRK13982 141 IRLARDCDLIVVAPATADLMAKMANGLADDLASAILLAANRPILLAPAMNPLMWNNPATRRNVAQLKRDGVHM 213 (475)
T ss_pred hhhhhhcCEEEEeeCCHHHHHHHHccccCcHHHHHHHhcCCCEEEEEcCCHHHhcCHHHHHHHHHHHHCCCEE
Confidence 3556788876 56666666544 36678999999975211 011136889999999876
No 189
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.00 E-value=4 Score=33.15 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=26.2
Q ss_pred HHhhhccEEEecCChHHHHHHHH----cCCCEEEEeC
Q 042754 81 DHLRSASLVISHAGSGSIFETLR----HGKPLIVVVN 113 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~ 113 (178)
++...+|++|+-||=||+..++. .++|.+-|-.
T Consensus 60 ~~~~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGIN~ 96 (287)
T PRK14077 60 ELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHA 96 (287)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHhcCCCCcEEEEeC
Confidence 34457999999999999998766 3789887754
No 190
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=78.93 E-value=2.3 Score=31.73 Aligned_cols=30 Identities=17% Similarity=0.376 Sum_probs=20.8
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
..+|++|||||......-.. ++|.|-+|..
T Consensus 33 ~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 33 EGADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp TT-SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred cCCeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 67999999999777777766 9999999875
No 191
>PLN00198 anthocyanidin reductase; Provisional
Probab=78.64 E-value=21 Score=29.03 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=38.2
Q ss_pred CCCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-c--ccccCCcceEEEE--eCh--hhH
Q 042754 8 VSLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-K--SLGEDGLMAVDYF--TFS--SSI 79 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~--~~~~~~~~nv~v~--~~~--~~~ 79 (178)
|-..+.||||+|+...+ .+.+. |...++ +|++++=....... . .... ...+++++ +.. .++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~---------L~~~g~-~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~d~~~~ 74 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKL---------LLQKGY-AVNTTVRDPENQKKIAHLRALQ-ELGDLKIFGADLTDEESF 74 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHH---------HHHCCC-EEEEEECCCCCHHHHHHHHhcC-CCCceEEEEcCCCChHHH
Confidence 44468899999984322 23333 334565 76544322111100 0 0000 00133333 222 236
Q ss_pred HHHhhhccEEEecCC
Q 042754 80 ADHLRSASLVISHAG 94 (178)
Q Consensus 80 ~~~~~~adlvIshaG 94 (178)
...+..+|.|||-||
T Consensus 75 ~~~~~~~d~vih~A~ 89 (338)
T PLN00198 75 EAPIAGCDLVFHVAT 89 (338)
T ss_pred HHHHhcCCEEEEeCC
Confidence 677889999999887
No 192
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=78.57 E-value=4.8 Score=30.22 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=41.1
Q ss_pred hhccE-EEecCChHHHH----------------HHHHcCCCEEEEeCCC-------CCC-chHH---------HHHHHHH
Q 042754 84 RSASL-VISHAGSGSIF----------------ETLRHGKPLIVVVNED-------LMD-NHQS---------ELAEELA 129 (178)
Q Consensus 84 ~~adl-vIshaG~~Ti~----------------E~l~~g~P~iviP~~~-------~~~-~~Q~---------~nA~~l~ 129 (178)
+.+|+ +|.-|-++|+. +++..++|.+++|... ... +.+. +|-++|.
T Consensus 77 ~~~D~~vVaPaTaNtlakiA~GiaD~l~t~~~~~~lk~~~pvvi~P~mn~~~~v~t~~p~~~~~~~~~r~~d~~~~~~L~ 156 (174)
T TIGR02699 77 GKYDFLLIAPATANTVAKIAYGIADTLVTNAVIQAAKAKVPVYIMPSDYKEGTVKTALPSGRKLELRMRKVDVENVEKLA 156 (174)
T ss_pred cccCEEEEEeCCHHHHHHHHccccCcHHHHHHHHHhccCCCEEEEECcCCCCceeeccCCCCceeeeeccccHHHHHHHh
Confidence 44564 46666666554 4456799999999831 112 2243 6888999
Q ss_pred hC-CCEEEeChhhHHHH
Q 042754 130 AR-KHLYCAHPQSLHQV 145 (178)
Q Consensus 130 ~~-G~~~~~~~~~L~~~ 145 (178)
+. |.-+.-++++|.+.
T Consensus 157 ~~~gv~v~~~~~~~~~~ 173 (174)
T TIGR02699 157 QMEGIEILTKPEDIYKI 173 (174)
T ss_pred hCCCeEEECCHHHHHhh
Confidence 87 77677788888765
No 193
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=78.53 E-value=31 Score=29.64 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=26.8
Q ss_pred hHHHHhhhccEEEecCChH-----------HHHHHHHcCCCEEEEeCC
Q 042754 78 SIADHLRSASLVISHAGSG-----------SIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~-----------Ti~E~l~~g~P~iviP~~ 114 (178)
++...++.||++|+-||.. -+.-+..+|+|.++++..
T Consensus 110 ~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqs 157 (426)
T PRK10017 110 DFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHS 157 (426)
T ss_pred HHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCc
Confidence 4556789999999965533 122456799999999865
No 194
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.50 E-value=4.2 Score=32.82 Aligned_cols=30 Identities=17% Similarity=0.388 Sum_probs=25.2
Q ss_pred hccEEEecCChHHHHHHHH---cCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLR---HGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~---~g~P~iviP~~ 114 (178)
.+|++|+-||=||+.+++. .++|.+.|+..
T Consensus 57 ~~d~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G 89 (277)
T PRK03708 57 DVDFIIAIGGDGTILRIEHKTKKDIPILGINMG 89 (277)
T ss_pred CCCEEEEEeCcHHHHHHHHhcCCCCeEEEEeCC
Confidence 6899999999999999885 35688888864
No 195
>PLN02650 dihydroflavonol-4-reductase
Probab=78.43 E-value=12 Score=30.54 Aligned_cols=76 Identities=24% Similarity=0.235 Sum_probs=37.8
Q ss_pred CCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-cc--ccCCcceEEEE--eCh--hhHH
Q 042754 9 SLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-SL--GEDGLMAVDYF--TFS--SSIA 80 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-~~--~~~~~~nv~v~--~~~--~~~~ 80 (178)
++++.||||+||...+ .+.+. |...++ +|++..-........ .. ......++.++ +.. ..+.
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~---------L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~ 72 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMR---------LLERGY-TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFD 72 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHH---------HHHCCC-EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHH
Confidence 4678999999985322 23333 334565 766543221111100 00 00000123322 222 2366
Q ss_pred HHhhhccEEEecCC
Q 042754 81 DHLRSASLVISHAG 94 (178)
Q Consensus 81 ~~~~~adlvIshaG 94 (178)
+++..+|.|||-|+
T Consensus 73 ~~~~~~d~ViH~A~ 86 (351)
T PLN02650 73 DAIRGCTGVFHVAT 86 (351)
T ss_pred HHHhCCCEEEEeCC
Confidence 78888999999876
No 196
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.20 E-value=5.9 Score=32.32 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=38.6
Q ss_pred HHHhhhccEEEecCChHHHHHHHH----cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccC
Q 042754 80 ADHLRSASLVISHAGSGSIFETLR----HGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMD 150 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~ 150 (178)
.++-..+|++|+=||=||+..+.. .++|.+-|-.. + .|+....+++++.++++++.
T Consensus 63 ~~~~~~~D~vi~lGGDGT~L~aa~~~~~~~~PilGIN~G-----~----------lGFL~~~~~~~~~~~l~~i~ 122 (296)
T PRK04539 63 TELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQG-----H----------LGFLTQIPREYMTDKLLPVL 122 (296)
T ss_pred hhcCcCCCEEEEECCcHHHHHHHHHhcccCCCEEEEecC-----C----------CeEeeccCHHHHHHHHHHHH
Confidence 344457999999999999999975 37898877532 1 34433456666666666654
No 197
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=77.96 E-value=20 Score=27.90 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=37.5
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEe--Chhh----HHHHhhhc
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFT--FSSS----IADHLRSA 86 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~--~~~~----~~~~~~~a 86 (178)
+=++|-.|.|+ +-..+ .+.|...|+ +|++++|.....+.. ..++.++. ...+ +.+.+..+
T Consensus 17 VR~itN~SSG~--iG~aL-----A~~L~~~G~-~V~li~r~~~~~~~~------~~~v~~i~v~s~~~m~~~l~~~~~~~ 82 (229)
T PRK06732 17 VRGITNHSTGQ--LGKII-----AETFLAAGH-EVTLVTTKTAVKPEP------HPNLSIIEIENVDDLLETLEPLVKDH 82 (229)
T ss_pred ceeecCccchH--HHHHH-----HHHHHhCCC-EEEEEECcccccCCC------CCCeEEEEEecHHHHHHHHHHHhcCC
Confidence 44555555543 33333 234445676 888888764321111 12333333 2222 33455678
Q ss_pred cEEEecCChHH
Q 042754 87 SLVISHAGSGS 97 (178)
Q Consensus 87 dlvIshaG~~T 97 (178)
|++|+-||...
T Consensus 83 DivIh~AAvsd 93 (229)
T PRK06732 83 DVLIHSMAVSD 93 (229)
T ss_pred CEEEeCCccCC
Confidence 99999999743
No 198
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=77.93 E-value=18 Score=30.79 Aligned_cols=73 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred CCcEEEEEeCCc-------------cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeC-
Q 042754 10 LKRIVFVTVGTT-------------CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTF- 75 (178)
Q Consensus 10 ~~~~ilVt~Gs~-------------~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~- 75 (178)
..+.+|||+|.. ..+.+-..+ .+.+...|. +|+++.|+..... +..+...+.
T Consensus 184 ~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~-----a~~~~~~Ga-~V~~~~g~~~~~~--------~~~~~~~~v~ 249 (390)
T TIGR00521 184 EGKRVLITAGPTREPIDPVRFISNLSSGKMGLAL-----AEAAYKRGA-DVTLITGPVSLLT--------PPGVKSIKVS 249 (390)
T ss_pred CCceEEEecCCccCCCCceeeecCCCcchHHHHH-----HHHHHHCCC-EEEEeCCCCccCC--------CCCcEEEEec
Confidence 457899999932 111232333 334556786 9999888764321 112222332
Q ss_pred -hhhH-HHHh----hhccEEEecCChH
Q 042754 76 -SSSI-ADHL----RSASLVISHAGSG 96 (178)
Q Consensus 76 -~~~~-~~~~----~~adlvIshaG~~ 96 (178)
..+| ..++ ..+|++|.-||..
T Consensus 250 ~~~~~~~~~~~~~~~~~D~~i~~Aavs 276 (390)
T TIGR00521 250 TAEEMLEAALNELAKDFDIFISAAAVA 276 (390)
T ss_pred cHHHHHHHHHHhhcccCCEEEEccccc
Confidence 3345 4333 5689999999965
No 199
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=77.80 E-value=22 Score=28.31 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=31.7
Q ss_pred ceEEEE--eChhhHHHHh---hhccEEEecCChHH------HHHHHHcCCCEEEEeCCC
Q 042754 68 MAVDYF--TFSSSIADHL---RSASLVISHAGSGS------IFETLRHGKPLIVVVNED 115 (178)
Q Consensus 68 ~nv~v~--~~~~~~~~~~---~~adlvIshaG~~T------i~E~l~~g~P~iviP~~~ 115 (178)
.|+... ||..+++.-| -.+|++||+-.+++ +.-|..+|+|+|+|-+|.
T Consensus 175 ~~iia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~ 233 (256)
T TIGR00715 175 DRIIAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQ 233 (256)
T ss_pred hcEEEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCC
Confidence 344433 5654444433 47899999855333 455778899999998774
No 200
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=77.55 E-value=20 Score=29.68 Aligned_cols=30 Identities=23% Similarity=0.542 Sum_probs=23.4
Q ss_pred hhccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++. .+|+|.|.||..
T Consensus 77 ~~~d~iiavGG-Gs~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 77 QEADMIFAVGG-GKAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHcCCCEEEecCc
Confidence 47899999877 6676653 358999999975
No 201
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=77.45 E-value=8.2 Score=29.96 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--eCh--hhHHHHhh-
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF--TFS--SSIADHLR- 84 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~--~~~--~~~~~~~~- 84 (178)
..+++|||+||.|.+.- + ...|.+.++ ++++ ++................++..+ +.. .++..++.
T Consensus 7 ~~k~~lItGas~gIG~a---i-----a~~l~~~G~-~vv~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 76 (251)
T PRK12481 7 NGKVAIITGCNTGLGQG---M-----AIGLAKAGA-DIVG-VGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQ 76 (251)
T ss_pred CCCEEEEeCCCchHHHH---H-----HHHHHHCCC-EEEE-ecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHH
Confidence 35789999999876532 2 223355676 7655 44432111100000011233322 322 22444444
Q ss_pred ------hccEEEecCChH
Q 042754 85 ------SASLVISHAGSG 96 (178)
Q Consensus 85 ------~adlvIshaG~~ 96 (178)
.-|++|+-+|..
T Consensus 77 ~~~~~g~iD~lv~~ag~~ 94 (251)
T PRK12481 77 AVEVMGHIDILINNAGII 94 (251)
T ss_pred HHHHcCCCCEEEECCCcC
Confidence 469999999853
No 202
>PLN02427 UDP-apiose/xylose synthase
Probab=77.34 E-value=22 Score=29.55 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=14.5
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
.+.+++..+|+|||-|+.
T Consensus 79 ~l~~~~~~~d~ViHlAa~ 96 (386)
T PLN02427 79 RLEGLIKMADLTINLAAI 96 (386)
T ss_pred HHHHHhhcCCEEEEcccc
Confidence 366778889999998873
No 203
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=77.00 E-value=7.7 Score=32.46 Aligned_cols=126 Identities=13% Similarity=0.173 Sum_probs=73.1
Q ss_pred cEEEEEeCCc--cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCC----cccccc-ccc-CCc-ceEEEE-eCh--hhH
Q 042754 12 RIVFVTVGTT--CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGT----YVPTKS-LGE-DGL-MAVDYF-TFS--SSI 79 (178)
Q Consensus 12 ~~ilVt~Gs~--~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~----~~~~~~-~~~-~~~-~nv~v~-~~~--~~~ 79 (178)
..+-|..|.+ ..++-++++. . +......++ +|++-.|... +..... .+. ..+ .++.+. +|. ++.
T Consensus 184 ~~ltILvGNSgd~sNnHieaL~--~-L~~~~~~~~-kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eY 259 (360)
T PF07429_consen 184 GKLTILVGNSGDPSNNHIEALE--A-LKQQFGDDV-KIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEY 259 (360)
T ss_pred CceEEEEcCCCCCCccHHHHHH--H-HHHhcCCCe-EEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHH
Confidence 4566666743 3455555541 1 222223344 7777666532 211110 000 012 356543 454 356
Q ss_pred HHHhhhccEEEec----CChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-----eChhhHHHHHHcc
Q 042754 80 ADHLRSASLVISH----AGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-----AHPQSLHQVIAGM 149 (178)
Q Consensus 80 ~~~~~~adlvIsh----aG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-----~~~~~L~~~i~~l 149 (178)
.++++.||+.|-. -|.||++-++.+|+|+++-- +-.--+.+.+.|+.+. ++...+.++=+++
T Consensus 260 l~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~~--------~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql 330 (360)
T PF07429_consen 260 LALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLSR--------DNPFWQDLKEQGIPVLFYGDELDEALVREAQRQL 330 (360)
T ss_pred HHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEec--------CChHHHHHHhCCCeEEeccccCCHHHHHHHHHHH
Confidence 7888999999863 59999999999999999632 2345677889998763 3555566554444
No 204
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=76.70 E-value=13 Score=28.00 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=36.8
Q ss_pred EEEEeCCccH-HHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhc--cE
Q 042754 14 VFVTVGTTCF-DALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSA--SL 88 (178)
Q Consensus 14 ilVt~Gs~~~-~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~a--dl 88 (178)
|||++||.-. ..+.+ .|...+. .++..+............ ....+...+.. +.+..++..+ |.
T Consensus 1 IlI~GatG~iG~~l~~---------~l~~~g~-~v~~~~~~~~~~~~~~~~--~~~~~~~~dl~~~~~~~~~~~~~~~d~ 68 (236)
T PF01370_consen 1 ILITGATGFIGSALVR---------QLLKKGH-EVIVLSRSSNSESFEEKK--LNVEFVIGDLTDKEQLEKLLEKANIDV 68 (236)
T ss_dssp EEEETTTSHHHHHHHH---------HHHHTTT-EEEEEESCSTGGHHHHHH--TTEEEEESETTSHHHHHHHHHHHTESE
T ss_pred EEEEccCCHHHHHHHH---------HHHHcCC-cccccccccccccccccc--ceEEEEEeeccccccccccccccCceE
Confidence 6888887421 23333 3345564 655444433322111100 01223333444 3488888888 99
Q ss_pred EEecCCh
Q 042754 89 VISHAGS 95 (178)
Q Consensus 89 vIshaG~ 95 (178)
||+-||.
T Consensus 69 vi~~a~~ 75 (236)
T PF01370_consen 69 VIHLAAF 75 (236)
T ss_dssp EEEEBSS
T ss_pred EEEeecc
Confidence 9999986
No 205
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.42 E-value=6.1 Score=31.84 Aligned_cols=51 Identities=20% Similarity=0.285 Sum_probs=34.8
Q ss_pred hccEEEecCChHHHHHHHH-cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccC
Q 042754 85 SASLVISHAGSGSIFETLR-HGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMD 150 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~-~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~ 150 (178)
.+|++|+=||=||+..++. +..|.+-|-.. ..|+....+++++.++|+++.
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G---------------~lGFL~~~~~~~~~~~l~~i~ 103 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG---------------GLGFLTEIEIDEVGSAIKKLI 103 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC---------------CCccCcccCHHHHHHHHHHHH
Confidence 7899999999999999988 46688776432 123333445555665555553
No 206
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=76.42 E-value=21 Score=30.47 Aligned_cols=71 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred CCcEEEEEeC---------------CccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEe
Q 042754 10 LKRIVFVTVG---------------TTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFT 74 (178)
Q Consensus 10 ~~~~ilVt~G---------------s~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~ 74 (178)
..+.+|||+| |.|. +-..+ ...+...|. +|+++.|+..... +..+...+
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~--~G~ai-----A~~l~~~Ga-~V~~v~~~~~~~~--------~~~~~~~d 250 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGK--MGYAL-----ARAAARRGA-DVTLVSGPVNLPT--------PAGVKRID 250 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcch--HHHHH-----HHHHHHCCC-EEEEeCCCccccC--------CCCcEEEc
Confidence 4578999999 4442 23333 334456786 8988888653211 11233333
Q ss_pred Ch--hhHHHHh----hhccEEEecCChH
Q 042754 75 FS--SSIADHL----RSASLVISHAGSG 96 (178)
Q Consensus 75 ~~--~~~~~~~----~~adlvIshaG~~ 96 (178)
.. .+|.+.+ ...|++|+-||..
T Consensus 251 v~~~~~~~~~v~~~~~~~DilI~~Aav~ 278 (399)
T PRK05579 251 VESAQEMLDAVLAALPQADIFIMAAAVA 278 (399)
T ss_pred cCCHHHHHHHHHHhcCCCCEEEEccccc
Confidence 32 3444444 4689999999864
No 207
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=76.30 E-value=12 Score=31.34 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=22.4
Q ss_pred hhccEEEecCChHHHHHHH---H--------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---R--------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~--------------------~g~P~iviP~~ 114 (178)
..+|+||.=|| ||++.+. + .++|.|.||..
T Consensus 84 ~~~D~IIavGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 136 (377)
T cd08176 84 EGCDFIISIGG-GSPHDCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINTT 136 (377)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCCC
Confidence 36899999877 6666643 1 36899999985
No 208
>PRK09134 short chain dehydrogenase; Provisional
Probab=76.00 E-value=13 Score=28.74 Aligned_cols=77 Identities=10% Similarity=0.133 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEE--eCh--hhHHH
Q 042754 9 SLKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYF--TFS--SSIAD 81 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~--~~~--~~~~~ 81 (178)
...+++|||+||.+.+. +.+ .|.+.++ ++++........... ......+.++.++ +.. .++..
T Consensus 7 ~~~k~vlItGas~giG~~la~---------~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~ 76 (258)
T PRK09134 7 AAPRAALVTGAARRIGRAIAL---------DLAAHGF-DVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRA 76 (258)
T ss_pred CCCCEEEEeCCCcHHHHHHHH---------HHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHH
Confidence 34568999999876543 322 3345675 776665433211000 0000012234333 222 13444
Q ss_pred Hhhh-------ccEEEecCCh
Q 042754 82 HLRS-------ASLVISHAGS 95 (178)
Q Consensus 82 ~~~~-------adlvIshaG~ 95 (178)
++.. .|++|+.+|.
T Consensus 77 ~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 77 LVARASAALGPITLLVNNASL 97 (258)
T ss_pred HHHHHHHHcCCCCEEEECCcC
Confidence 4443 5999999985
No 209
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=74.52 E-value=7.4 Score=29.76 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=30.2
Q ss_pred hhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 77 SSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.++.+++..||++||.-=++ ..=++.+|+|.|.+.+.
T Consensus 249 ~~~~~~~~~~~~~Is~RlH~-~I~a~~~g~P~i~i~y~ 285 (286)
T PF04230_consen 249 DELLELISQADLVISMRLHG-AILALSLGVPVIAISYD 285 (286)
T ss_pred HHHHHHHhcCCEEEecCCHH-HHHHHHcCCCEEEEecC
Confidence 45888999999999976655 55688999999998763
No 210
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=74.47 E-value=3.6 Score=35.53 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=43.0
Q ss_pred hhHHHHhhhccEEEec---CC-hHHHHHHHHcCCC---EEEEeCCCCCCchHHHHHHHHHhCCCEE-EeChhhHHHHHHc
Q 042754 77 SSIADHLRSASLVISH---AG-SGSIFETLRHGKP---LIVVVNEDLMDNHQSELAEELAARKHLY-CAHPQSLHQVIAG 148 (178)
Q Consensus 77 ~~~~~~~~~adlvIsh---aG-~~Ti~E~l~~g~P---~iviP~~~~~~~~Q~~nA~~l~~~G~~~-~~~~~~L~~~i~~ 148 (178)
+++..+|+.||++|.- =| ..++.|++++|+| .|++...... .++ ...|+.+ ..+++.+.++|.+
T Consensus 352 ~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~-~~~-------~~~g~lv~p~d~~~la~ai~~ 423 (460)
T cd03788 352 EELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA-AEE-------LSGALLVNPYDIDEVADAIHR 423 (460)
T ss_pred HHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEEeccccc-hhh-------cCCCEEECCCCHHHHHHHHHH
Confidence 5689999999999953 23 4678999999999 4444432111 111 1233322 2378889999988
Q ss_pred cC
Q 042754 149 MD 150 (178)
Q Consensus 149 l~ 150 (178)
++
T Consensus 424 ~l 425 (460)
T cd03788 424 AL 425 (460)
T ss_pred HH
Confidence 74
No 211
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=74.47 E-value=17 Score=29.85 Aligned_cols=79 Identities=22% Similarity=0.136 Sum_probs=40.0
Q ss_pred CCCCCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-ccccCCcceEEEE--eCh--hhH
Q 042754 6 DSVSLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-SLGEDGLMAVDYF--TFS--SSI 79 (178)
Q Consensus 6 ~~~~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-~~~~~~~~nv~v~--~~~--~~~ 79 (178)
.+.+..++||||+|+...+ .+.+. |...++ +|++. ..+...... ........+++++ +.. ..+
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~---------L~~~G~-~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~ 73 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKL---------LLQRGY-TVHAT-LRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSF 73 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHH---------HHHCCC-EEEEE-eCChHHHHHHHHhhccCCeEEEEECCCCCHHHH
Confidence 3455667899999975332 23333 344575 76654 332210000 0000001234333 222 235
Q ss_pred HHHhhhccEEEecCCh
Q 042754 80 ADHLRSASLVISHAGS 95 (178)
Q Consensus 80 ~~~~~~adlvIshaG~ 95 (178)
.+++..+|.|||-||.
T Consensus 74 ~~~~~~~d~Vih~A~~ 89 (353)
T PLN02896 74 DEAVKGCDGVFHVAAS 89 (353)
T ss_pred HHHHcCCCEEEECCcc
Confidence 6677889999999874
No 212
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=74.25 E-value=15 Score=30.37 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=34.4
Q ss_pred hhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC--CCEE-------EeChhhHHHHHH
Q 042754 77 SSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR--KHLY-------CAHPQSLHQVIA 147 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~--G~~~-------~~~~~~L~~~i~ 147 (178)
++++++++.||+++.|. |... +..-..|++.|+.. |+.+ .++.+.|.++|+
T Consensus 189 ~~Ld~lL~~sDiv~lh~------------------PlT~--eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~ 248 (324)
T COG0111 189 DSLDELLAEADILTLHL------------------PLTP--ETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD 248 (324)
T ss_pred ccHHHHHhhCCEEEEcC------------------CCCc--chhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH
Confidence 46999999999999883 4432 23456677777775 3332 136677777776
Q ss_pred c
Q 042754 148 G 148 (178)
Q Consensus 148 ~ 148 (178)
+
T Consensus 249 ~ 249 (324)
T COG0111 249 S 249 (324)
T ss_pred c
Confidence 4
No 213
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.24 E-value=8.2 Score=30.72 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=25.1
Q ss_pred hhccEEEecCChHHHHHHHH-cCCCEEEEeC
Q 042754 84 RSASLVISHAGSGSIFETLR-HGKPLIVVVN 113 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~-~g~P~iviP~ 113 (178)
..+|++|+=||=||+..++. +++|.+-|-.
T Consensus 40 ~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~ 70 (256)
T PRK14075 40 VTADLIIVVGGDGTVLKAAKKVGTPLVGFKA 70 (256)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCEEEEeC
Confidence 46799999999999999877 6888877653
No 214
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=74.15 E-value=20 Score=30.08 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=22.4
Q ss_pred hhccEEEecCChHHHHHHHH-----------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLR-----------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~-----------------------~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++.+.. .++|.|.||..
T Consensus 85 ~~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 85 EKVDFILAVGG-GSVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred cCCCEEEEeCC-hHHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 45899999877 66666531 26899999975
No 215
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=74.09 E-value=5.7 Score=33.40 Aligned_cols=64 Identities=19% Similarity=0.223 Sum_probs=47.2
Q ss_pred ceEEEEeChh--hHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCC
Q 042754 68 MAVDYFTFSS--SIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARK 132 (178)
Q Consensus 68 ~nv~v~~~~~--~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G 132 (178)
-.+++.+|++ ++++++-.||+=+-||- =|..-|..+|+|+|=-.++..-+-|-...-.+|....
T Consensus 242 L~~~~LPf~~Q~~yD~LLW~cD~NfVRGE-DSFVRAqWAgkPfvWhIYPQeddaHl~KL~AFL~~y~ 307 (371)
T TIGR03837 242 LTVAVLPFVPQDDYDRLLWACDLNFVRGE-DSFVRAQWAGKPFVWHIYPQEEDAHLAKLEAFLDLYC 307 (371)
T ss_pred eEEEEcCCCChhhHHHHHHhChhcEeech-hHHHHHHHcCCCceeecccCchhhHHHHHHHHHHHHh
Confidence 5678889986 49999999999999954 8999999999999987776322333333334444443
No 216
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=73.74 E-value=21 Score=29.29 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=14.8
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
.+..+++.+|+|||-|+.
T Consensus 83 ~l~~~~~~~d~ViHlAa~ 100 (348)
T PRK15181 83 DCQKACKNVDYVLHQAAL 100 (348)
T ss_pred HHHHHhhCCCEEEECccc
Confidence 467778999999999874
No 217
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=73.72 E-value=15 Score=30.81 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=23.1
Q ss_pred hhccEEEecCChHHHHHHH-------------------------HcCCCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFETL-------------------------RHGKPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-------------------------~~g~P~iviP~~~ 115 (178)
..||+||.=|| |+++++. ..++|.|.||...
T Consensus 85 ~~~D~IiaiGG-GSviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTa 140 (379)
T TIGR02638 85 SGADYLIAIGG-GSPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTTA 140 (379)
T ss_pred cCCCEEEEeCC-hHHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCCC
Confidence 36899999877 6676665 1358999999863
No 218
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=73.54 E-value=4 Score=36.43 Aligned_cols=36 Identities=17% Similarity=0.063 Sum_probs=29.6
Q ss_pred HHHHhhhccEEEecC----ChHHHHHHHHcCCCEEEEeCC
Q 042754 79 IADHLRSASLVISHA----GSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 79 ~~~~~~~adlvIsha----G~~Ti~E~l~~g~P~iviP~~ 114 (178)
..++++.||++|.-+ =+.|+.||+++|+|+|.-...
T Consensus 468 y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~ 507 (590)
T cd03793 468 YEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLS 507 (590)
T ss_pred hHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCc
Confidence 578899999999833 257999999999999986553
No 219
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=73.49 E-value=19 Score=30.00 Aligned_cols=30 Identities=23% Similarity=0.463 Sum_probs=23.3
Q ss_pred hhccEEEecCChHHHHHHHH----------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLR----------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~----------------------~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++.- .++|.|.||..
T Consensus 82 ~~~D~IIavGG-GSviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 82 FNADFVIGIGG-GSPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 46799999877 67776653 16899999986
No 220
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=73.47 E-value=15 Score=26.42 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=27.4
Q ss_pred HHHhhhccEEEecCCh-----HHHHH---HHHcCCCEEEEeCC
Q 042754 80 ADHLRSASLVISHAGS-----GSIFE---TLRHGKPLIVVVNE 114 (178)
Q Consensus 80 ~~~~~~adlvIshaG~-----~Ti~E---~l~~g~P~iviP~~ 114 (178)
..+|..||+||-+=|- |+.+. +.++|+|.|++-.+
T Consensus 70 ~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~ 112 (144)
T TIGR03646 70 RKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPE 112 (144)
T ss_pred HHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecch
Confidence 5789999999999883 45554 47899999988544
No 221
>PRK06179 short chain dehydrogenase; Provisional
Probab=73.34 E-value=27 Score=27.13 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=37.2
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhh--
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRS-- 85 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~-- 85 (178)
.+.++||+||.+.+. +.+ .|...++ +|+ .++.+....... ....+...+.. .++..++..
T Consensus 4 ~~~vlVtGasg~iG~~~a~---------~l~~~g~-~V~-~~~r~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~~~~ 68 (270)
T PRK06179 4 SKVALVTGASSGIGRATAE---------KLARAGY-RVF-GTSRNPARAAPI----PGVELLELDVTDDASVQAAVDEVI 68 (270)
T ss_pred CCEEEEecCCCHHHHHHHH---------HHHHCCC-EEE-EEeCChhhcccc----CCCeeEEeecCCHHHHHHHHHHHH
Confidence 468999999876542 322 3345575 654 445442211110 01122223333 235555554
Q ss_pred -----ccEEEecCChH
Q 042754 86 -----ASLVISHAGSG 96 (178)
Q Consensus 86 -----adlvIshaG~~ 96 (178)
.|++|+-+|..
T Consensus 69 ~~~g~~d~li~~ag~~ 84 (270)
T PRK06179 69 ARAGRIDVLVNNAGVG 84 (270)
T ss_pred HhCCCCCEEEECCCCC
Confidence 59999999963
No 222
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.85 E-value=7.9 Score=31.50 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.7
Q ss_pred HHHhhhccEEEecCChHHHHHHHH----cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHcc
Q 042754 80 ADHLRSASLVISHAGSGSIFETLR----HGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGM 149 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l 149 (178)
.++-..+|++|+=||=||+..++. .++|.+-|-.. ..|+....+++++.++++++
T Consensus 58 ~~~~~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgin~G---------------~lGFl~~~~~~~~~~~l~~i 116 (292)
T PRK03378 58 AEIGQQADLAIVVGGDGNMLGAARVLARYDIKVIGINRG---------------NLGFLTDLDPDNALQQLSDV 116 (292)
T ss_pred hhcCCCCCEEEEECCcHHHHHHHHHhcCCCCeEEEEECC---------------CCCcccccCHHHHHHHHHHH
Confidence 344457999999999999999985 36787766542 13443344555566665555
No 223
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=72.55 E-value=13 Score=28.61 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=40.5
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeC---------hhhHHHHh
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTF---------SSSIADHL 83 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~---------~~~~~~~~ 83 (178)
.||+|+++..+..+.+.+.+ ...+. +++++.+.+...............+..++. .+++.+.+
T Consensus 3 ~vl~Sg~Gsn~~al~~~~~~-------~~l~~-~i~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l 74 (207)
T PLN02331 3 AVFVSGGGSNFRAIHDACLD-------GRVNG-DVVVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDAL 74 (207)
T ss_pred EEEEeCCChhHHHHHHHHHc-------CCCCe-EEEEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHH
Confidence 47888877777777776621 12344 677777765432211100011122233222 22344444
Q ss_pred h--hccEEEecCChHHHHH
Q 042754 84 R--SASLVISHAGSGSIFE 100 (178)
Q Consensus 84 ~--~adlvIshaG~~Ti~E 100 (178)
. .+|++|+ +|++.+.-
T Consensus 75 ~~~~~Dliv~-agy~~il~ 92 (207)
T PLN02331 75 RGAGVDFVLL-AGYLKLIP 92 (207)
T ss_pred HhcCCCEEEE-eCcchhCC
Confidence 4 5999999 67776443
No 224
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=72.53 E-value=18 Score=30.27 Aligned_cols=30 Identities=33% Similarity=0.421 Sum_probs=22.5
Q ss_pred hhccEEEecCChHHHHHHH---H--------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---R--------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~--------------------~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++.+. + .++|.|.||..
T Consensus 82 ~~~D~IIaiGG-Gs~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 82 AGADGVIGFGG-GSSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 37899999877 6666653 1 27899999975
No 225
>PLN02929 NADH kinase
Probab=72.21 E-value=6.3 Score=32.29 Aligned_cols=68 Identities=19% Similarity=0.353 Sum_probs=42.9
Q ss_pred HHhhhccEEEecCChHHHHHHHH---cCCCEEEEeCCCCC--CchHHHHHHHHHh---CCCEEEeChhhHHHHHHccC
Q 042754 81 DHLRSASLVISHAGSGSIFETLR---HGKPLIVVVNEDLM--DNHQSELAEELAA---RKHLYCAHPQSLHQVIAGMD 150 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~---~g~P~iviP~~~~~--~~~Q~~nA~~l~~---~G~~~~~~~~~L~~~i~~l~ 150 (178)
.....+|+||+-||=||+..+.. .++|++-|-..... +-.++.|. +.+ .|+....+++++.+.|.++.
T Consensus 60 ~~~~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~--~~~~r~lGfL~~~~~~~~~~~L~~il 135 (301)
T PLN02929 60 QPIRDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDE--FDARRSTGHLCAATAEDFEQVLDDVL 135 (301)
T ss_pred cccCCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--cccccCccccccCCHHHHHHHHHHHH
Confidence 34467899999999999999855 47899988542100 00122222 222 34333457888888888775
No 226
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=71.91 E-value=32 Score=28.68 Aligned_cols=31 Identities=29% Similarity=0.446 Sum_probs=22.3
Q ss_pred hhccEEEecCChHHHHHHH-----Hc------------------CCCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RH------------------GKPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~------------------g~P~iviP~~~ 115 (178)
..+|+||.=|| |+++.+. .+ ++|.|.||...
T Consensus 79 ~~~d~IiaiGG-Gs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 79 EGCDGVIAVGG-GSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 36899999877 5555542 22 78999999863
No 227
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=71.73 E-value=47 Score=29.09 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCc-----c--------HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--
Q 042754 9 SLKRIVFVTVGTT-----C--------FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF-- 73 (178)
Q Consensus 9 ~~~~~ilVt~Gs~-----~--------~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~-- 73 (178)
-..+.||||.|.. + .+.+-..+ .+++...|. +|.+++|+..... +.++++.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~al-----A~aa~~~GA-~VtlI~Gp~~~~~--------p~~v~~i~V 319 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAI-----AAAAAAAGA-EVTLISGPVDLAD--------PQGVKVIHV 319 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHH-----HHHHHHCCC-cEEEEeCCcCCCC--------CCCceEEEe
Confidence 4567899999943 1 23444444 345556786 9999999865311 1223333
Q ss_pred eChhhHHHHhhh---ccEEEecC
Q 042754 74 TFSSSIADHLRS---ASLVISHA 93 (178)
Q Consensus 74 ~~~~~~~~~~~~---adlvIsha 93 (178)
.-..+|.+.+.. +|++|+-|
T Consensus 320 ~ta~eM~~av~~~~~~Di~I~aA 342 (475)
T PRK13982 320 ESARQMLAAVEAALPADIAIFAA 342 (475)
T ss_pred cCHHHHHHHHHhhCCCCEEEEec
Confidence 334455555532 67777543
No 228
>PRK12367 short chain dehydrogenase; Provisional
Probab=71.51 E-value=26 Score=27.31 Aligned_cols=75 Identities=13% Similarity=0.133 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhc
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSA 86 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~a 86 (178)
..++++||+||.|.+. +.+ .+...++ ++++. +.+......... .........+.. .++...+...
T Consensus 13 ~~k~~lITGas~gIG~ala~---------~l~~~G~-~Vi~~-~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~i 80 (245)
T PRK12367 13 QGKRIGITGASGALGKALTK---------AFRAKGA-KVIGL-THSKINNSESND-ESPNEWIKWECGKEESLDKQLASL 80 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHH---------HHHHCCC-EEEEE-ECCchhhhhhhc-cCCCeEEEeeCCCHHHHHHhcCCC
Confidence 3578999999987653 322 3345675 76654 333211111000 011111222322 2355677889
Q ss_pred cEEEecCChH
Q 042754 87 SLVISHAGSG 96 (178)
Q Consensus 87 dlvIshaG~~ 96 (178)
|++|+-+|.+
T Consensus 81 DilVnnAG~~ 90 (245)
T PRK12367 81 DVLILNHGIN 90 (245)
T ss_pred CEEEECCccC
Confidence 9999999863
No 229
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=71.46 E-value=20 Score=30.07 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=22.8
Q ss_pred hccEEEecCChHHHHHHHH-------------------------cCCCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFETLR-------------------------HGKPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~-------------------------~g~P~iviP~~~ 115 (178)
.+|+||.=|| |+++++.- .++|.|.||...
T Consensus 87 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTa 141 (382)
T PRK10624 87 GADYLIAIGG-GSPQDTCKAIGIISNNPEFADVRSLEGVAPTKKPSVPIIAIPTTA 141 (382)
T ss_pred CCCEEEEeCC-hHHHHHHHHHHHHHHCCCCCCHHHHhCcCcccCCCCCEEEECCCC
Confidence 6999999877 66666652 258999999863
No 230
>PRK07856 short chain dehydrogenase; Provisional
Probab=71.37 E-value=27 Score=26.82 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=36.2
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhh--
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRS-- 85 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~-- 85 (178)
.+++|||+||.+.+. +.+. |...++ ++++. +.+... .. .. ....+...+.. .++.+++..
T Consensus 6 ~k~~lItGas~gIG~~la~~---------l~~~g~-~v~~~-~r~~~~-~~-~~--~~~~~~~~D~~~~~~~~~~~~~~~ 70 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARA---------FLAAGA-TVVVC-GRRAPE-TV-DG--RPAEFHAADVRDPDQVAALVDAIV 70 (252)
T ss_pred CCEEEEeCCCchHHHHHHHH---------HHHCCC-EEEEE-eCChhh-hh-cC--CceEEEEccCCCHHHHHHHHHHHH
Confidence 578999999876643 3333 344565 66554 443211 00 00 01112222332 124455544
Q ss_pred -----ccEEEecCCh
Q 042754 86 -----ASLVISHAGS 95 (178)
Q Consensus 86 -----adlvIshaG~ 95 (178)
.|++|+-+|.
T Consensus 71 ~~~~~id~vi~~ag~ 85 (252)
T PRK07856 71 ERHGRLDVLVNNAGG 85 (252)
T ss_pred HHcCCCCEEEECCCC
Confidence 4999999985
No 231
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=71.21 E-value=23 Score=29.66 Aligned_cols=30 Identities=30% Similarity=0.523 Sum_probs=22.7
Q ss_pred hhccEEEecCChHHHHHHH---H--------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---R--------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~--------------------~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++. + .++|.|.||..
T Consensus 79 ~~~D~IIaiGG-GS~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 79 GGCDVIIALGG-GSPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 47899999877 6777643 2 36899999975
No 232
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=71.13 E-value=56 Score=27.20 Aligned_cols=127 Identities=8% Similarity=0.031 Sum_probs=63.1
Q ss_pred CCCCCCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHH
Q 042754 5 RDSVSLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADH 82 (178)
Q Consensus 5 ~~~~~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~ 82 (178)
++..++++.|+|.+|++....+. .++.+.++ +++++.-.... +... . .......++.+ .+.++
T Consensus 6 ~~~~~~~~~ilIiG~g~~~~~~~---------~a~~~~G~-~v~~~~~~~~~-~~~~-~---ad~~~~~~~~d~~~l~~~ 70 (395)
T PRK09288 6 TPLSPSATRVMLLGSGELGKEVA---------IEAQRLGV-EVIAVDRYANA-PAMQ-V---AHRSHVIDMLDGDALRAV 70 (395)
T ss_pred CCCCCCCCEEEEECCCHHHHHHH---------HHHHHCCC-EEEEEeCCCCC-chHH-h---hhheEECCCCCHHHHHHH
Confidence 45566778899988775322222 23355676 77766543221 1110 0 11223334432 24455
Q ss_pred hh--hccEEEecCCh---HHHHHHHHcCCCEEEEeCCCCCC--chHHHHHHH-H-HhCCCEE-----EeChhhHHHHHHc
Q 042754 83 LR--SASLVISHAGS---GSIFETLRHGKPLIVVVNEDLMD--NHQSELAEE-L-AARKHLY-----CAHPQSLHQVIAG 148 (178)
Q Consensus 83 ~~--~adlvIshaG~---~Ti~E~l~~g~P~iviP~~~~~~--~~Q~~nA~~-l-~~~G~~~-----~~~~~~L~~~i~~ 148 (178)
.. .+|+|++-... .++.++...|+|. .|...... .+ ....+. + ++.|+.. ..+.+++.+.+.+
T Consensus 71 ~~~~~id~vi~~~e~~~~~~~~~l~~~g~~~--~~~~~a~~~~~d-K~~~k~~l~~~~gip~p~~~~~~s~~~l~~~~~~ 147 (395)
T PRK09288 71 IEREKPDYIVPEIEAIATDALVELEKEGFNV--VPTARATRLTMN-REGIRRLAAEELGLPTSPYRFADSLEELRAAVEE 147 (395)
T ss_pred HHHhCCCEEEEeeCcCCHHHHHHHHhcCCee--CCCHHHHHHHhC-HHHHHHHHHHhCCCCCCCceEECCHHHHHHHHHh
Confidence 55 78999875443 3455666667774 25432110 11 112222 3 3567653 2366777776666
Q ss_pred c
Q 042754 149 M 149 (178)
Q Consensus 149 l 149 (178)
+
T Consensus 148 ~ 148 (395)
T PRK09288 148 I 148 (395)
T ss_pred c
Confidence 5
No 233
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=70.61 E-value=13 Score=29.86 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=43.3
Q ss_pred cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhccEEEecCChHHH-
Q 042754 22 CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSASLVISHAGSGSI- 98 (178)
Q Consensus 22 ~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~adlvIshaG~~Ti- 98 (178)
|-+.+.+.+ ++.+. .+. ++++.+......... .+++..+.. .++...+..||++|.-|| +.+
T Consensus 13 GDe~~l~~~-----l~~l~-~~~-~~~v~s~~p~~~~~~-------~~v~~~~r~~~~~~~~~l~~~D~vI~gGG-~l~~ 77 (298)
T TIGR03609 13 GDEALLAAL-----LRELP-PGV-EPTVLSNDPAETAKL-------YGVEAVNRRSLLAVLRALRRADVVIWGGG-SLLQ 77 (298)
T ss_pred chHHHHHHH-----HHhcC-CCC-eEEEecCChHHHHhh-------cCceEEccCCHHHHHHHHHHCCEEEECCc-cccc
Confidence 444455555 34443 344 777776653322211 133333322 246677899999998554 322
Q ss_pred ---------------HHHHHcCCCEEEEeCC
Q 042754 99 ---------------FETLRHGKPLIVVVNE 114 (178)
Q Consensus 99 ---------------~E~l~~g~P~iviP~~ 114 (178)
.-+..+|+|.++++..
T Consensus 78 d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~g 108 (298)
T TIGR03609 78 DVTSFRSLLYYLGLMRLARLFGKPVILWGQG 108 (298)
T ss_pred CCcccccHHHHHHHHHHHHHcCCCEEEEecc
Confidence 2234579999998865
No 234
>PRK08265 short chain dehydrogenase; Provisional
Probab=70.57 E-value=17 Score=28.28 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=36.7
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEE--EeCh--hhHHHHhh-
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDY--FTFS--SSIADHLR- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v--~~~~--~~~~~~~~- 84 (178)
.+++|||+||.|.+. +.+ .|.+.++ +|++. +.+........ .....++.. .+.. .++..++.
T Consensus 6 ~k~vlItGas~gIG~~ia~---------~l~~~G~-~V~~~-~r~~~~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~ 73 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVAR---------ALVAAGA-RVAIV-DIDADNGAAVA-ASLGERARFIATDITDDAAIERAVAT 73 (261)
T ss_pred CCEEEEECCCChHHHHHHH---------HHHHCCC-EEEEE-eCCHHHHHHHH-HHhCCeeEEEEecCCCHHHHHHHHHH
Confidence 578999999876542 322 3345675 66554 44321110000 001122332 2332 22444444
Q ss_pred ------hccEEEecCCh
Q 042754 85 ------SASLVISHAGS 95 (178)
Q Consensus 85 ------~adlvIshaG~ 95 (178)
..|++|+-+|.
T Consensus 74 ~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 74 VVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHhCCCCEEEECCCC
Confidence 46999999985
No 235
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=69.57 E-value=22 Score=29.51 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=25.0
Q ss_pred HHHHhh--hccEEEecCChHHHHHH-----HHcC-------------------CCEEEEeCCC
Q 042754 79 IADHLR--SASLVISHAGSGSIFET-----LRHG-------------------KPLIVVVNED 115 (178)
Q Consensus 79 ~~~~~~--~adlvIshaG~~Ti~E~-----l~~g-------------------~P~iviP~~~ 115 (178)
..+.++ .+|.||.=|| ||++.+ +.+. +|.|.||...
T Consensus 70 ~~~~~~~~~~D~IIaiGG-GS~~D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~ 131 (366)
T PF00465_consen 70 AAEQARKFGADCIIAIGG-GSVMDAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTA 131 (366)
T ss_dssp HHHHHHHTTSSEEEEEES-HHHHHHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSS
T ss_pred HHHHHHhcCCCEEEEcCC-CCcCcHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCc
Confidence 344444 8899999988 666654 2223 7999999863
No 236
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=69.51 E-value=30 Score=29.04 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=12.1
Q ss_pred hccEEEecCChHHHHHH
Q 042754 85 SASLVISHAGSGSIFET 101 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~ 101 (178)
.+|+||.=|| |+++.+
T Consensus 83 ~~D~IiavGG-GS~iD~ 98 (380)
T cd08185 83 GCDFVVGLGG-GSSMDT 98 (380)
T ss_pred CCCEEEEeCC-ccHHHH
Confidence 6899999877 555554
No 237
>PLN02253 xanthoxin dehydrogenase
Probab=69.26 E-value=19 Score=28.26 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=19.1
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
.+++|||+|+.+.+. +.+ .|.+.++ ++++.
T Consensus 18 ~k~~lItGas~gIG~~la~---------~l~~~G~-~v~~~ 48 (280)
T PLN02253 18 GKVALVTGGATGIGESIVR---------LFHKHGA-KVCIV 48 (280)
T ss_pred CCEEEEECCCchHHHHHHH---------HHHHcCC-EEEEE
Confidence 478999999876553 322 3345675 76654
No 238
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=68.91 E-value=24 Score=29.19 Aligned_cols=23 Identities=9% Similarity=0.209 Sum_probs=18.7
Q ss_pred EeChhhHHHHhhhccEEEecCChH
Q 042754 73 FTFSSSIADHLRSASLVISHAGSG 96 (178)
Q Consensus 73 ~~~~~~~~~~~~~adlvIshaG~~ 96 (178)
..|++ +.+++++||+++-|+..+
T Consensus 189 ~~y~~-l~ell~~sDii~l~~Plt 211 (324)
T COG1052 189 ARYVD-LDELLAESDIISLHCPLT 211 (324)
T ss_pred ceecc-HHHHHHhCCEEEEeCCCC
Confidence 45665 899999999999997743
No 239
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=68.79 E-value=18 Score=27.96 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
..+++|||+||.+.+. +.+ .|.+.++ ++++..
T Consensus 14 ~~k~vlItGas~gIG~~ia~---------~l~~~G~-~v~~~~ 46 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAV---------ALAKAGA-DIIITT 46 (258)
T ss_pred CCCEEEEeCCCchHHHHHHH---------HHHHCCC-EEEEEe
Confidence 3578999999886552 322 3345676 665543
No 240
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=68.44 E-value=12 Score=26.47 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=32.6
Q ss_pred HHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEEecCChH
Q 042754 38 ELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSG 96 (178)
Q Consensus 38 ~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvIshaG~~ 96 (178)
.|...++ +-+.+++++..........-...++.+.+|. ++.+++..+|+||+-.+.+
T Consensus 30 ~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~-~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 30 ALAALGA-KEITIVNRTPERAEALAEEFGGVNIEAIPLE-DLEEALQEADIVINATPSG 86 (135)
T ss_dssp HHHHTTS-SEEEEEESSHHHHHHHHHHHTGCSEEEEEGG-GHCHHHHTESEEEE-SSTT
T ss_pred HHHHcCC-CEEEEEECCHHHHHHHHHHcCccccceeeHH-HHHHHHhhCCeEEEecCCC
Confidence 3345676 5445566653211110000012467888886 5778999999999987665
No 241
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=68.37 E-value=22 Score=29.37 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=23.2
Q ss_pred hhccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++. ..++|.|.||..
T Consensus 76 ~~~D~IIavGG-GS~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 76 NGADVVIGIGG-GKTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred cCCCEEEEecC-chhhHHHHHHHHHcCCCEEEeCCc
Confidence 47899999988 5665542 348999999975
No 242
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=68.24 E-value=59 Score=25.81 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=29.5
Q ss_pred eChhhHHHHh---hhccEEEecCChHH-----HHHHHHcCCCEEEEeCCC
Q 042754 74 TFSSSIADHL---RSASLVISHAGSGS-----IFETLRHGKPLIVVVNED 115 (178)
Q Consensus 74 ~~~~~~~~~~---~~adlvIshaG~~T-----i~E~l~~g~P~iviP~~~ 115 (178)
||..+++..| -.+|++||+-.+++ +.-|..+|+|+|+|-+|.
T Consensus 176 Pfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~ 225 (248)
T PRK08057 176 PFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPA 225 (248)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCC
Confidence 4554444444 46899999977663 444677899999997774
No 243
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=68.16 E-value=39 Score=28.32 Aligned_cols=27 Identities=11% Similarity=0.078 Sum_probs=20.1
Q ss_pred hccEEEecCChHHH--H--HHHHcCCCEEEE
Q 042754 85 SASLVISHAGSGSI--F--ETLRHGKPLIVV 111 (178)
Q Consensus 85 ~adlvIshaG~~Ti--~--E~l~~g~P~ivi 111 (178)
+-|+||+++|.+-- . -+-..|+|.+..
T Consensus 89 kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 89 KPDLLVGIDAPDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred CCCEEEEeCCCCccHHHHHHHhhCCCCEEEE
Confidence 58999999975411 2 566789999975
No 244
>PLN02214 cinnamoyl-CoA reductase
Probab=68.14 E-value=44 Score=27.36 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.8
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
++.+.+..+|+||+-||.
T Consensus 74 ~~~~~~~~~d~Vih~A~~ 91 (342)
T PLN02214 74 ALKAAIDGCDGVFHTASP 91 (342)
T ss_pred HHHHHHhcCCEEEEecCC
Confidence 367788899999999874
No 245
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=68.05 E-value=33 Score=29.09 Aligned_cols=30 Identities=27% Similarity=0.455 Sum_probs=21.9
Q ss_pred hhccEEEecCChHHHHHHH-H----------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-R----------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-~----------------------~g~P~iviP~~ 114 (178)
..||+||.=|| |+++++. + ..+|.|.||..
T Consensus 105 ~~~D~IiavGG-GS~iD~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTt 157 (395)
T PRK15454 105 SGCDGVIAFGG-GSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTT 157 (395)
T ss_pred cCcCEEEEeCC-hHHHHHHHHHHHHHhCCCccHHHHhcccccCCCCCEEEECCC
Confidence 58899999888 5555543 1 14699999975
No 246
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=67.86 E-value=17 Score=30.28 Aligned_cols=16 Identities=31% Similarity=0.657 Sum_probs=11.8
Q ss_pred hccEEEecCChHHHHHH
Q 042754 85 SASLVISHAGSGSIFET 101 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~ 101 (178)
.+|+||.=|| |+++.+
T Consensus 77 ~~D~IIavGG-Gs~~D~ 92 (367)
T cd08182 77 GPDAVLAVGG-GSVLDT 92 (367)
T ss_pred CcCEEEEeCC-cHHHHH
Confidence 6899999888 555543
No 247
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=67.70 E-value=46 Score=26.70 Aligned_cols=18 Identities=17% Similarity=0.147 Sum_probs=14.7
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
++...+..+|+||+-||.
T Consensus 70 ~~~~~~~~~d~vih~A~~ 87 (325)
T PLN02989 70 SFELAIDGCETVFHTASP 87 (325)
T ss_pred HHHHHHcCCCEEEEeCCC
Confidence 366778889999999984
No 248
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=67.63 E-value=19 Score=30.10 Aligned_cols=88 Identities=14% Similarity=0.269 Sum_probs=50.0
Q ss_pred CCCCCCCCCCcEEEEEeCCccHHHH-HHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-hhH
Q 042754 2 GDTRDSVSLKRIVFVTVGTTCFDAL-VKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS-SSI 79 (178)
Q Consensus 2 ~~~~~~~~~~~~ilVt~Gs~~~~~l-~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~-~~~ 79 (178)
+++.........|||.+||.|.+.. ++.. +..+..+++..|+.+..+-.+.. ..-++++|- ++.
T Consensus 149 ~~~~~~~~~g~~vLv~ggsggVG~~aiQlA---------k~~~~~~v~t~~s~e~~~l~k~l-----GAd~vvdy~~~~~ 214 (347)
T KOG1198|consen 149 GKRSKKLSKGKSVLVLGGSGGVGTAAIQLA---------KHAGAIKVVTACSKEKLELVKKL-----GADEVVDYKDENV 214 (347)
T ss_pred cccccccCCCCeEEEEeCCcHHHHHHHHHH---------HhcCCcEEEEEcccchHHHHHHc-----CCcEeecCCCHHH
Confidence 3455566667899999998776543 2222 23342255555555443222221 133556664 345
Q ss_pred HHHhhh-----ccEEEecCChHHHHHHHH
Q 042754 80 ADHLRS-----ASLVISHAGSGSIFETLR 103 (178)
Q Consensus 80 ~~~~~~-----adlvIshaG~~Ti~E~l~ 103 (178)
.+.+.. -|+|+--.|..+...++.
T Consensus 215 ~e~~kk~~~~~~DvVlD~vg~~~~~~~~~ 243 (347)
T KOG1198|consen 215 VELIKKYTGKGVDVVLDCVGGSTLTKSLS 243 (347)
T ss_pred HHHHHhhcCCCccEEEECCCCCccccchh
Confidence 566655 899999888745554433
No 249
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=67.58 E-value=1.9 Score=35.55 Aligned_cols=35 Identities=31% Similarity=0.497 Sum_probs=28.7
Q ss_pred hHHHHhhhccEEEecCChHHHHHHHH----cCCCEEEEe
Q 042754 78 SIADHLRSASLVISHAGSGSIFETLR----HGKPLIVVV 112 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP 112 (178)
++...|++||+||+-||-||..-|.. -.+|+|-|-
T Consensus 98 ~lsq~i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvN 136 (395)
T KOG4180|consen 98 DLSQPIRWADMVISVGGDGTFLLAASRVIDDSKPVIGVN 136 (395)
T ss_pred hccCcCchhhEEEEecCccceeehhhhhhccCCceeeec
Confidence 46666999999999999999876655 568999873
No 250
>PRK05693 short chain dehydrogenase; Provisional
Probab=67.19 E-value=21 Score=27.94 Aligned_cols=71 Identities=14% Similarity=0.189 Sum_probs=35.5
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh----
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR---- 84 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~---- 84 (178)
+++|||+||.|.+. +.+ .+...++ +|++.+ .+......... ........+..+ ++..++.
T Consensus 2 k~vlItGasggiG~~la~---------~l~~~G~-~V~~~~-r~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 68 (274)
T PRK05693 2 PVVLITGCSSGIGRALAD---------AFKAAGY-EVWATA-RKAEDVEALAA--AGFTAVQLDVNDGAALARLAEELEA 68 (274)
T ss_pred CEEEEecCCChHHHHHHH---------HHHHCCC-EEEEEe-CCHHHHHHHHH--CCCeEEEeeCCCHHHHHHHHHHHHH
Confidence 57999999876653 332 2345575 766543 33211110000 011122234332 2444443
Q ss_pred ---hccEEEecCCh
Q 042754 85 ---SASLVISHAGS 95 (178)
Q Consensus 85 ---~adlvIshaG~ 95 (178)
..|++|+-+|.
T Consensus 69 ~~~~id~vi~~ag~ 82 (274)
T PRK05693 69 EHGGLDVLINNAGY 82 (274)
T ss_pred hcCCCCEEEECCCC
Confidence 46999999995
No 251
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=67.06 E-value=44 Score=25.69 Aligned_cols=113 Identities=12% Similarity=0.156 Sum_probs=57.7
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc--cccccCCcce-EEEEe------ChhhHHHHh
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT--KSLGEDGLMA-VDYFT------FSSSIADHL 83 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~--~~~~~~~~~n-v~v~~------~~~~~~~~~ 83 (178)
.||+|++++-+..+.+++.. ...+. ++..+.-.+..... +......+.- +.... |-..+.+.+
T Consensus 4 ~VlaSG~GSNlqaiida~~~-------~~~~a-~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~~~r~~~d~~l~~~l 75 (200)
T COG0299 4 AVLASGNGSNLQAIIDAIKG-------GKLDA-EIVAVISDKADAYALERAAKAGIPTVVLDRKEFPSREAFDRALVEAL 75 (200)
T ss_pred EEEEeCCcccHHHHHHHHhc-------CCCCc-EEEEEEeCCCCCHHHHHHHHcCCCEEEeccccCCCHHHHHHHHHHHH
Confidence 57888876667777776611 12233 55555554422111 1000011110 11112 223355555
Q ss_pred --hhccEEEecCChHHHHHH-----HHcCC----CEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 84 --RSASLVISHAGSGSIFET-----LRHGK----PLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 84 --~~adlvIshaG~~Ti~E~-----l~~g~----P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
...|+||. ||+..+... ..-.+ |++ +|.......||.....-....|+.+
T Consensus 76 ~~~~~dlvvL-AGyMrIL~~~fl~~~~grIlNIHPSL-LP~f~G~h~~~~A~~aG~k~sG~TV 136 (200)
T COG0299 76 DEYGPDLVVL-AGYMRILGPEFLSRFEGRILNIHPSL-LPAFPGLHAHEQALEAGVKVSGCTV 136 (200)
T ss_pred HhcCCCEEEE-cchHHHcCHHHHHHhhcceEecCccc-ccCCCCchHHHHHHHcCCCccCcEE
Confidence 56789988 788755433 22222 666 4665555667776666666677765
No 252
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=66.85 E-value=50 Score=25.55 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=19.1
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
.++++||+|+.|.+. +.+ .|.+.++ ++++.
T Consensus 9 ~k~vlItG~s~gIG~~la~---------~l~~~G~-~v~~~ 39 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVK---------ELLANGA-NVVNA 39 (266)
T ss_pred CCEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEE
Confidence 578999999876653 332 3345565 66654
No 253
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=66.53 E-value=21 Score=24.91 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=23.5
Q ss_pred HHHhhhccEEE-ecCChHHHH----------------HHHHcCCCEEEEeCC
Q 042754 80 ADHLRSASLVI-SHAGSGSIF----------------ETLRHGKPLIVVVNE 114 (178)
Q Consensus 80 ~~~~~~adlvI-shaG~~Ti~----------------E~l~~g~P~iviP~~ 114 (178)
-++...+|++| .-+-++|+. .++..++|.|++|..
T Consensus 68 ~~~~~~~D~~vVaPaT~NtlaKiA~GiaD~l~~~~~~~~l~~~~pvvi~P~m 119 (129)
T PF02441_consen 68 IELSRWADAMVVAPATANTLAKIANGIADNLLTRVALAALKEGKPVVIAPAM 119 (129)
T ss_dssp HHHHHTESEEEEEEEEHHHHHHHHTT--SSHHHHHHHHHHHTTCGEEEEEEE
T ss_pred ccccccCCEEEEcccCHHHHHHHHhCCcchHHHHHHHHHccCCCCeEEEEeC
Confidence 45567888764 445555543 345569999999974
No 254
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=66.42 E-value=18 Score=27.88 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 1 MGDTRDSVSLKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 1 ~~~~~~~~~~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
|.|.++..-..++++||+|+.+.+. +.+. |...+. ++++.+
T Consensus 1 ~~~~~~~~l~~k~vlVtG~s~gIG~~la~~---------l~~~G~-~vv~~~ 42 (255)
T PRK06113 1 MFNSDNLRLDGKCAIITGAGAGIGKEIAIT---------FATAGA-SVVVSD 42 (255)
T ss_pred CCCccccCcCCCEEEEECCCchHHHHHHHH---------HHHCCC-eEEEEe
Confidence 5666555555799999999886543 3333 345675 766554
No 255
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.36 E-value=13 Score=30.38 Aligned_cols=32 Identities=28% Similarity=0.436 Sum_probs=25.6
Q ss_pred HhhhccEEEecCChHHHHHHHH----cCCCEEEEeC
Q 042754 82 HLRSASLVISHAGSGSIFETLR----HGKPLIVVVN 113 (178)
Q Consensus 82 ~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~ 113 (178)
+-..+|+||+=||=||+.+++. .++|++.|..
T Consensus 59 ~~~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~ 94 (295)
T PRK01231 59 LGEVCDLVIVVGGDGSLLGAARALARHNVPVLGINR 94 (295)
T ss_pred cccCCCEEEEEeCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 3346999999999999999976 3678887754
No 256
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=66.30 E-value=26 Score=29.01 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=23.3
Q ss_pred hhccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++. ..++|.|.||..
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPTt 110 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPTI 110 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCCc
Confidence 46899999877 6666643 359999999975
No 257
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.10 E-value=10 Score=30.39 Aligned_cols=30 Identities=17% Similarity=0.418 Sum_probs=23.8
Q ss_pred hhccEEEecCChHHHHHHHHc-----CCCEEEEeC
Q 042754 84 RSASLVISHAGSGSIFETLRH-----GKPLIVVVN 113 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~-----g~P~iviP~ 113 (178)
..+|++|+=||=||+..++.. .+|.+-|..
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~ 72 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGIST 72 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEec
Confidence 457999999999999999874 567665554
No 258
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=66.04 E-value=67 Score=26.52 Aligned_cols=29 Identities=28% Similarity=0.500 Sum_probs=23.0
Q ss_pred hccEEEecCChHHHHHH-----HHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFET-----LRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~ 114 (178)
.+|+||.=|| |+++.+ ...|+|.|.||..
T Consensus 80 ~~d~IIaIGG-Gs~~D~aK~vA~~~~~p~i~IPTT 113 (348)
T cd08175 80 DTDLIIAVGS-GTINDITKYVSYKTGIPYISVPTA 113 (348)
T ss_pred cCCEEEEECC-cHHHHHHHHHHHhcCCCEEEecCc
Confidence 7999999888 566654 3358999999976
No 259
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.94 E-value=17 Score=29.33 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=26.8
Q ss_pred HHHhhhccEEEecCChHHHHHHHH----cCCCEEEEeC
Q 042754 80 ADHLRSASLVISHAGSGSIFETLR----HGKPLIVVVN 113 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~ 113 (178)
.++...+|++|+=||=||+..++. .++|.+-|-.
T Consensus 37 ~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 37 EEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeC
Confidence 344457999999999999998765 3689887754
No 260
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=65.92 E-value=13 Score=32.72 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.7
Q ss_pred HhhhccEEEecCChHHHHHHHHc----CCCEEEEe
Q 042754 82 HLRSASLVISHAGSGSIFETLRH----GKPLIVVV 112 (178)
Q Consensus 82 ~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP 112 (178)
+-..+|+||+=||=||++.+... ++|++-|.
T Consensus 259 l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN 293 (508)
T PLN02935 259 LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFS 293 (508)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 33579999999999999999874 56777654
No 261
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=65.80 E-value=31 Score=28.92 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=22.4
Q ss_pred hhccEEEecCChHHHHHHH---Hc--------------------CCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---RH--------------------GKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~~--------------------g~P~iviP~~ 114 (178)
..+|+||.=|| |+++.+. +. ++|.|.||..
T Consensus 84 ~~~d~IIaiGG-GsviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 84 NGCDVIIAVGG-GSPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 47899999877 6666654 22 4699999976
No 262
>PRK08589 short chain dehydrogenase; Validated
Probab=65.75 E-value=14 Score=29.09 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=20.0
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.+++|||+||.|.+.- + ...|...++ ++++..
T Consensus 6 ~k~vlItGas~gIG~a---i-----a~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 6 NKVAVITGASTGIGQA---S-----AIALAQEGA-YVLAVD 37 (272)
T ss_pred CCEEEEECCCchHHHH---H-----HHHHHHCCC-EEEEEe
Confidence 5789999998866522 2 223345675 766653
No 263
>PRK06182 short chain dehydrogenase; Validated
Probab=65.40 E-value=26 Score=27.40 Aligned_cols=73 Identities=18% Similarity=0.266 Sum_probs=37.2
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh---
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR--- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~--- 84 (178)
.+.++||+||.+.+. +.+ .|...++ +++.. +.+.. ...... .....+...+..+ ++..++.
T Consensus 3 ~k~vlItGasggiG~~la~---------~l~~~G~-~V~~~-~r~~~-~l~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~ 69 (273)
T PRK06182 3 KKVALVTGASSGIGKATAR---------RLAAQGY-TVYGA-ARRVD-KMEDLA-SLGVHPLSLDVTDEASIKAAVDTII 69 (273)
T ss_pred CCEEEEECCCChHHHHHHH---------HHHHCCC-EEEEE-eCCHH-HHHHHH-hCCCeEEEeeCCCHHHHHHHHHHHH
Confidence 478999999876543 322 3334565 66544 44321 111000 0112223334332 3444554
Q ss_pred ----hccEEEecCChH
Q 042754 85 ----SASLVISHAGSG 96 (178)
Q Consensus 85 ----~adlvIshaG~~ 96 (178)
..|++|+-+|.+
T Consensus 70 ~~~~~id~li~~ag~~ 85 (273)
T PRK06182 70 AEEGRIDVLVNNAGYG 85 (273)
T ss_pred HhcCCCCEEEECCCcC
Confidence 579999999953
No 264
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=65.39 E-value=33 Score=28.12 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=22.9
Q ss_pred hccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
.+|+||.=|| |++..+. ..|+|.|.||..
T Consensus 75 ~~d~iIaiGG-Gsv~D~aK~vA~~~~~p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGG-GKVIDVAKYAAFLRGIPLSVPTTN 108 (331)
T ss_pred CCCEEEEeCC-cHHHHHHHHHHhhcCCCEEEecCc
Confidence 4899999877 6776654 359999999975
No 265
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=64.93 E-value=64 Score=26.55 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=23.2
Q ss_pred hccEEEecCChHHHHHH-----HHcCCCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFET-----LRHGKPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~~ 115 (178)
.+|+||.=|| |+++.+ ...|+|.|.||...
T Consensus 78 ~~d~iIaiGG-Gs~~D~aK~~a~~~~~p~i~iPTT~ 112 (339)
T cd08173 78 GADFVIGVGG-GRVIDVAKVAAYKLGIPFISVPTAA 112 (339)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEecCcc
Confidence 7899999877 566554 34589999999753
No 266
>PLN02206 UDP-glucuronate decarboxylase
Probab=64.90 E-value=29 Score=29.88 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=11.1
Q ss_pred HHhhhccEEEecCC
Q 042754 81 DHLRSASLVISHAG 94 (178)
Q Consensus 81 ~~~~~adlvIshaG 94 (178)
..+..+|.|||-|+
T Consensus 179 ~~l~~~D~ViHlAa 192 (442)
T PLN02206 179 PILLEVDQIYHLAC 192 (442)
T ss_pred hhhcCCCEEEEeee
Confidence 44567999999886
No 267
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=64.82 E-value=30 Score=26.42 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=38.1
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc--cccCCcceEEEEeC--h--hhHHHHh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS--LGEDGLMAVDYFTF--S--SSIADHL 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~--~~~~~~~nv~v~~~--~--~~~~~~~ 83 (178)
.+++|||+||.+.+. +.+. +...++ ++++..+......... .......++.++.. . ..+...+
T Consensus 6 ~~~~lItG~s~~iG~~la~~---------l~~~g~-~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~ 75 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVA---------LAQEGA-KVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLV 75 (247)
T ss_pred CCEEEEECCCCHHHHHHHHH---------HHHcCC-EEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 578999999876542 3333 344575 7765544332110000 00011123443332 2 2244445
Q ss_pred hh-------ccEEEecCCh
Q 042754 84 RS-------ASLVISHAGS 95 (178)
Q Consensus 84 ~~-------adlvIshaG~ 95 (178)
.. .|.+|+-+|.
T Consensus 76 ~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 76 EEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHHcCCCCEEEECCCC
Confidence 44 6999999986
No 268
>PRK06841 short chain dehydrogenase; Provisional
Probab=64.73 E-value=28 Score=26.67 Aligned_cols=33 Identities=15% Similarity=0.374 Sum_probs=19.9
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.+++|||+||.+.+. +.+ .|.+.++ ++++ ++.+
T Consensus 15 ~k~vlItGas~~IG~~la~---------~l~~~G~-~Vi~-~~r~ 48 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAE---------LFAAKGA-RVAL-LDRS 48 (255)
T ss_pred CCEEEEECCCChHHHHHHH---------HHHHCCC-EEEE-EeCC
Confidence 578999999876543 322 3345575 7655 4443
No 269
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=64.65 E-value=40 Score=22.54 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=49.3
Q ss_pred eEEEEeC-hhhHHHHhhhccEEEecCC-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHH
Q 042754 69 AVDYFTF-SSSIADHLRSASLVISHAG-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVI 146 (178)
Q Consensus 69 nv~v~~~-~~~~~~~~~~adlvIshaG-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i 146 (178)
++.+..- .+++.+.+..=+++|+.+. .-.+..++..+++.|++...... .....+..++.|+.+..++..-.+..
T Consensus 23 ~v~v~a~~~~~~~~~~~~~~lvIt~gdR~di~~~a~~~~i~~iIltg~~~~---~~~v~~la~~~~i~vi~t~~dtf~ta 99 (105)
T PF07085_consen 23 KVVVGAMSLSDFLEYLKPGDLVITPGDREDIQLAAIEAGIACIILTGGLEP---SEEVLELAKELGIPVISTPYDTFETA 99 (105)
T ss_dssp EEEE-SS-HHHHHHCHHTTEEEEEETT-HHHHHHHCCTTECEEEEETT-------HHHHHHHHHHT-EEEE-SS-HHHHH
T ss_pred eEEEEECCHHHHHhhcCCCeEEEEeCCcHHHHHHHHHhCCCEEEEeCCCCC---CHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 4555554 4567788888999999655 66778888899999999865321 34566667788888776665555444
Q ss_pred H
Q 042754 147 A 147 (178)
Q Consensus 147 ~ 147 (178)
.
T Consensus 100 ~ 100 (105)
T PF07085_consen 100 R 100 (105)
T ss_dssp H
T ss_pred H
Confidence 3
No 270
>PRK06194 hypothetical protein; Provisional
Probab=64.53 E-value=25 Score=27.61 Aligned_cols=75 Identities=13% Similarity=0.143 Sum_probs=37.8
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEE--eCh--hhHHHHh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYF--TFS--SSIADHL 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~--~~~--~~~~~~~ 83 (178)
.+++|||+|+.+.+. +.+. |.+.++ +|++ ++.+...... ........++.++ +.. .++..++
T Consensus 6 ~k~vlVtGasggIG~~la~~---------l~~~G~-~V~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~ 74 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARI---------GAALGM-KLVL-ADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALA 74 (287)
T ss_pred CCEEEEeCCccHHHHHHHHH---------HHHCCC-EEEE-EeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 468999999876542 3333 345575 7654 4443211000 0000012234333 222 2355555
Q ss_pred hh-------ccEEEecCChH
Q 042754 84 RS-------ASLVISHAGSG 96 (178)
Q Consensus 84 ~~-------adlvIshaG~~ 96 (178)
.. .|++|+-+|..
T Consensus 75 ~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 75 DAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHcCCCCEEEECCCCC
Confidence 53 69999999964
No 271
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=64.31 E-value=90 Score=26.52 Aligned_cols=128 Identities=17% Similarity=0.188 Sum_probs=73.2
Q ss_pred CCCcEEEEEeCCc----cHHHHHHHhccHHHHHHHHh--CCC-CeEEEEEeCCCcccc----cccccCCcceEE-EEeCh
Q 042754 9 SLKRIVFVTVGTT----CFDALVKAVDTLEVKQELTR--RGY-THLLIQMGRGTYVPT----KSLGEDGLMAVD-YFTFS 76 (178)
Q Consensus 9 ~~~~~ilVt~Gs~----~~~~l~~~~~~~~~~~~l~~--~~~-~~vvv~~G~~~~~~~----~~~~~~~~~nv~-v~~~~ 76 (178)
+.+|-++||.-|. .|+-|.+++.. .-+.+.+ +++ .-++++||++...+. ..+. .-.+|. ..+|.
T Consensus 252 ~~~pallvsSTswTpDEdf~ILL~AL~~--y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~--~~~~v~~~tpWL 327 (444)
T KOG2941|consen 252 PERPALLVSSTSWTPDEDFGILLEALVI--YEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEK--NLQHVQVCTPWL 327 (444)
T ss_pred cCCCeEEEecCCCCCcccHHHHHHHHHh--hhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHh--cccceeeeeccc
Confidence 4578889988775 46666666521 1122222 222 257788887642111 0100 012332 23564
Q ss_pred --hhHHHHhhhccEEEec--CCh-----HHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCC-E-EEeChhhHHHH
Q 042754 77 --SSIADHLRSASLVISH--AGS-----GSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKH-L-YCAHPQSLHQV 145 (178)
Q Consensus 77 --~~~~~~~~~adlvIsh--aG~-----~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~-~-~~~~~~~L~~~ 145 (178)
+|.+.+++.||+=||- +.. .-+.+..-+|+|++.+-++- -..+.+.|- | +..+.++|.+.
T Consensus 328 ~aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkc---------l~ELVkh~eNGlvF~Ds~eLa~q 398 (444)
T KOG2941|consen 328 EAEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKC---------LDELVKHGENGLVFEDSEELAEQ 398 (444)
T ss_pred ccccchhHhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchh---------HHHHHhcCCCceEeccHHHHHHH
Confidence 5789999999987652 221 24677888999999987652 223444332 2 34477888888
Q ss_pred HHcc
Q 042754 146 IAGM 149 (178)
Q Consensus 146 i~~l 149 (178)
+..+
T Consensus 399 l~~l 402 (444)
T KOG2941|consen 399 LQML 402 (444)
T ss_pred HHHH
Confidence 8776
No 272
>PRK06180 short chain dehydrogenase; Provisional
Probab=63.80 E-value=34 Score=26.86 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=36.6
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--eChh--hHHHHhh-
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF--TFSS--SIADHLR- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~--~~~~--~~~~~~~- 84 (178)
.+.+|||+||.+.+. +.+. |...+. +|++ ++.+........ .....++..+ +..+ .+...+.
T Consensus 4 ~~~vlVtGasggiG~~la~~---------l~~~G~-~V~~-~~r~~~~~~~l~-~~~~~~~~~~~~D~~d~~~~~~~~~~ 71 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQA---------ALAAGH-RVVG-TVRSEAARADFE-ALHPDRALARLLDVTDFDAIDAVVAD 71 (277)
T ss_pred CCEEEEecCCChHHHHHHHH---------HHhCcC-EEEE-EeCCHHHHHHHH-hhcCCCeeEEEccCCCHHHHHHHHHH
Confidence 467999999876543 3333 344565 6554 444321110000 0011233322 3321 2334443
Q ss_pred ------hccEEEecCChH
Q 042754 85 ------SASLVISHAGSG 96 (178)
Q Consensus 85 ------~adlvIshaG~~ 96 (178)
..|.+|+-+|..
T Consensus 72 ~~~~~~~~d~vv~~ag~~ 89 (277)
T PRK06180 72 AEATFGPIDVLVNNAGYG 89 (277)
T ss_pred HHHHhCCCCEEEECCCcc
Confidence 479999999964
No 273
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=63.76 E-value=46 Score=27.85 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=12.6
Q ss_pred hhccEEEecCChHHHHHH
Q 042754 84 RSASLVISHAGSGSIFET 101 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~ 101 (178)
..+|+||.=|| |+++.+
T Consensus 74 ~~~D~IIaiGG-GS~~D~ 90 (374)
T cd08183 74 AGCDVVIAIGG-GSVIDA 90 (374)
T ss_pred cCCCEEEEecC-chHHHH
Confidence 36899999887 555554
No 274
>PRK05717 oxidoreductase; Validated
Probab=63.61 E-value=34 Score=26.38 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.1
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.++++||+|+.+.+
T Consensus 10 ~k~vlItG~sg~IG 23 (255)
T PRK05717 10 GRVALVTGAARGIG 23 (255)
T ss_pred CCEEEEeCCcchHH
Confidence 47899999987654
No 275
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=63.54 E-value=34 Score=26.12 Aligned_cols=33 Identities=15% Similarity=0.119 Sum_probs=20.0
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
..+++|||+||.+.+.- + .+.|.+.++ ++++..
T Consensus 4 ~~k~vlItGas~gIG~~---i-----a~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 4 EGKVALVTGANTGLGQG---I-----AVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCEEEEECCCchHHHH---H-----HHHHHHCCC-EEEEEc
Confidence 35789999998765432 1 223345676 766543
No 276
>PLN02778 3,5-epimerase/4-reductase
Probab=63.53 E-value=46 Score=26.72 Aligned_cols=11 Identities=9% Similarity=-0.115 Sum_probs=8.8
Q ss_pred CcEEEEEeCCc
Q 042754 11 KRIVFVTVGTT 21 (178)
Q Consensus 11 ~~~ilVt~Gs~ 21 (178)
+..||||||+.
T Consensus 9 ~~kiLVtG~tG 19 (298)
T PLN02778 9 TLKFLIYGKTG 19 (298)
T ss_pred CCeEEEECCCC
Confidence 46799999975
No 277
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=63.50 E-value=31 Score=26.71 Aligned_cols=33 Identities=18% Similarity=0.427 Sum_probs=20.5
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.+.++||+||.|.+. +.+ .|.+.++ ++++ ++.+
T Consensus 5 ~k~vlItGas~gIG~~ia~---------~l~~~G~-~V~~-~~r~ 38 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVD---------RFVAEGA-RVAV-LDKS 38 (262)
T ss_pred CcEEEEECCCChHHHHHHH---------HHHHCCC-EEEE-EeCC
Confidence 578999999876552 322 3345676 7655 4443
No 278
>PRK08628 short chain dehydrogenase; Provisional
Probab=63.45 E-value=27 Score=26.93 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=19.5
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
..+++|||+||.+.+. +.+ .|.+.+. ++++..
T Consensus 6 ~~~~ilItGasggiG~~la~---------~l~~~G~-~v~~~~ 38 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISL---------RLAEEGA-IPVIFG 38 (258)
T ss_pred CCCEEEEeCCCChHHHHHHH---------HHHHcCC-cEEEEc
Confidence 3578999999876542 322 3345575 665543
No 279
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=63.31 E-value=46 Score=26.71 Aligned_cols=75 Identities=20% Similarity=0.197 Sum_probs=38.0
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-c-c-cccCCcceEEEE--eCh--hhHHHH
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-K-S-LGEDGLMAVDYF--TFS--SSIADH 82 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~-~-~~~~~~~nv~v~--~~~--~~~~~~ 82 (178)
.++||||+||...+ .+.+. |...++ +|+...-....... . . .......+++++ +.. ..+..+
T Consensus 5 ~~~vlVTGatG~iG~~l~~~---------L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 74 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKL---------LLLRGY-TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQA 74 (322)
T ss_pred CCEEEEECCCcHHHHHHHHH---------HHHCCC-EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHH
Confidence 47899999986333 23333 334575 76544332221110 0 0 000011233332 222 236777
Q ss_pred hhhccEEEecCCh
Q 042754 83 LRSASLVISHAGS 95 (178)
Q Consensus 83 ~~~adlvIshaG~ 95 (178)
+..+|.|||-||.
T Consensus 75 ~~~~d~vih~A~~ 87 (322)
T PLN02986 75 IEGCDAVFHTASP 87 (322)
T ss_pred HhCCCEEEEeCCC
Confidence 8889999999974
No 280
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=63.25 E-value=36 Score=25.78 Aligned_cols=50 Identities=18% Similarity=0.198 Sum_probs=36.1
Q ss_pred hccE-EEecCChHHHHH----------------HHHcCCCEEEEeCCCCCCchH--HHHHHHHHhCCCEEE
Q 042754 85 SASL-VISHAGSGSIFE----------------TLRHGKPLIVVVNEDLMDNHQ--SELAEELAARKHLYC 136 (178)
Q Consensus 85 ~adl-vIshaG~~Ti~E----------------~l~~g~P~iviP~~~~~~~~Q--~~nA~~l~~~G~~~~ 136 (178)
++|+ +|.-|-+||+.. ++..++|.+++|.. +..+. .+|...|.+.|+.+.
T Consensus 78 ~aD~~vIaPaTaNtlAKiA~GiaDnLlt~~a~~~L~~~~pvii~P~~--M~~~p~~~~Nl~~L~~~G~~vi 146 (185)
T PRK06029 78 GTDGMVIAPCSMKTLAKIAHGYSDNLITRAADVMLKERRRLVLCVRE--TPLHLGHLRNMTKLAEMGAIIM 146 (185)
T ss_pred hhCEEEEeeCCHhHHHHHHccccCcHHHHHHHHHHhcCCCEEEEecc--ccCCHHHHHHHHHHHHCcCEEE
Confidence 4664 577777777643 56789999999964 33333 469999999998764
No 281
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=63.22 E-value=37 Score=30.04 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=24.7
Q ss_pred hccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.+|++||+||..+.... ...+|+|-|+..
T Consensus 54 ~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 82 (526)
T TIGR02329 54 RCDVVVAGGSNGAYLKS-RLSLPVIVIKPT 82 (526)
T ss_pred CCcEEEECchHHHHHHH-hCCCCEEEecCC
Confidence 68999999998877776 568999999876
No 282
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=63.18 E-value=53 Score=27.31 Aligned_cols=75 Identities=20% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc---c-cccCCcceEEEE--eCh--hhHHH
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK---S-LGEDGLMAVDYF--TFS--SSIAD 81 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~---~-~~~~~~~nv~v~--~~~--~~~~~ 81 (178)
....||||++|. | +-..+ ++.|-..|| . |+-+.+....++. . .......+.+++ +-. ..+..
T Consensus 5 ~~~~VcVTGAsG-f--Igswi-----vk~LL~rGY-~-V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ 74 (327)
T KOG1502|consen 5 EGKKVCVTGASG-F--IGSWI-----VKLLLSRGY-T-VRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDK 74 (327)
T ss_pred CCcEEEEeCCch-H--HHHHH-----HHHHHhCCC-E-EEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHH
Confidence 567899999874 3 22222 223334576 5 4555554432221 0 011122233333 222 23888
Q ss_pred HhhhccEEEecCC
Q 042754 82 HLRSASLVISHAG 94 (178)
Q Consensus 82 ~~~~adlvIshaG 94 (178)
.+..||.|+|-|-
T Consensus 75 ai~gcdgVfH~As 87 (327)
T KOG1502|consen 75 AIDGCDGVFHTAS 87 (327)
T ss_pred HHhCCCEEEEeCc
Confidence 8999999998764
No 283
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=63.06 E-value=88 Score=26.00 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=21.1
Q ss_pred ccEEEecCChHHHHHHH-------HcCCCEEEEeCC
Q 042754 86 ASLVISHAGSGSIFETL-------RHGKPLIVVVNE 114 (178)
Q Consensus 86 adlvIshaG~~Ti~E~l-------~~g~P~iviP~~ 114 (178)
+|+||.=|| |++..+. ..|+|.|.||..
T Consensus 93 ~d~IIavGG-Gsv~D~aK~iA~~~~~gip~i~IPTT 127 (358)
T PRK00002 93 SDTLIALGG-GVIGDLAGFAAATYMRGIRFIQVPTT 127 (358)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHhcCCCCEEEcCch
Confidence 499999877 5555543 348999999985
No 284
>PRK05993 short chain dehydrogenase; Provisional
Probab=63.05 E-value=22 Score=27.98 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=19.8
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.++++||+||.|.+. +.+ .|...++ +|++. +.+
T Consensus 4 ~k~vlItGasggiG~~la~---------~l~~~G~-~Vi~~-~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCAR---------ALQSDGW-RVFAT-CRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHH---------HHHHCCC-EEEEE-ECC
Confidence 468999999876553 322 3345575 76554 443
No 285
>PRK07775 short chain dehydrogenase; Provisional
Probab=63.03 E-value=25 Score=27.59 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCCCCCCCCCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 1 MGDTRDSVSLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 1 ~~~~~~~~~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
|+|... ..+++.+|||+|+.+.+. .+ .+.|...++ ++++...
T Consensus 1 ~~~~~~-~~~~~~vlVtGa~g~iG~---~l-----a~~L~~~G~-~V~~~~r 42 (274)
T PRK07775 1 MPRFEP-HPDRRPALVAGASSGIGA---AT-----AIELAAAGF-PVALGAR 42 (274)
T ss_pred CCCCCC-CCCCCEEEEECCCchHHH---HH-----HHHHHHCCC-EEEEEeC
Confidence 556444 456789999999875542 22 223345676 7766554
No 286
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=62.99 E-value=68 Score=26.60 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.6
Q ss_pred hccEEEecCChHHHHHHH-------HcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETL-------RHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l-------~~g~P~iviP~~ 114 (178)
++|+||.=|| |++..+. ..|+|.|.||..
T Consensus 83 r~d~IIaiGG-Gsv~D~ak~vA~~~~rgip~i~VPTT 118 (344)
T cd08169 83 RRTAIVAVGG-GATGDVAGFVASTLFRGIAFIRVPTT 118 (344)
T ss_pred CCcEEEEECC-cHHHHHHHHHHHHhccCCcEEEecCC
Confidence 4899999877 5555432 349999999975
No 287
>PRK06138 short chain dehydrogenase; Provisional
Probab=62.93 E-value=27 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=19.1
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.++++||+||.+.+. +.+.+ ...+. ++++..
T Consensus 5 ~k~~lItG~sg~iG~~la~~l---------~~~G~-~v~~~~ 36 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLF---------AREGA-RVVVAD 36 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHH---------HHCCC-eEEEec
Confidence 468999999876543 33333 34565 765554
No 288
>PLN02727 NAD kinase
Probab=62.88 E-value=15 Score=34.76 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=28.0
Q ss_pred HHHHhhhccEEEecCChHHHHHHHHc----CCCEEEEeC
Q 042754 79 IADHLRSASLVISHAGSGSIFETLRH----GKPLIVVVN 113 (178)
Q Consensus 79 ~~~~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP~ 113 (178)
+.++-..+|+||+=||=||++.+... ++|++-|-.
T Consensus 737 ~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINl 775 (986)
T PLN02727 737 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNL 775 (986)
T ss_pred hhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeC
Confidence 44555679999999999999999774 678887654
No 289
>CHL00194 ycf39 Ycf39; Provisional
Probab=62.77 E-value=80 Score=25.41 Aligned_cols=17 Identities=6% Similarity=0.315 Sum_probs=13.2
Q ss_pred hHHHHhhhccEEEecCC
Q 042754 78 SIADHLRSASLVISHAG 94 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG 94 (178)
.+...+..+|+||+-++
T Consensus 57 ~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 57 TLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHCCCCEEEECCC
Confidence 36778899999998544
No 290
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=62.42 E-value=12 Score=24.09 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=34.2
Q ss_pred cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE-EeChhhHHHHHHccC
Q 042754 92 HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY-CAHPQSLHQVIAGMD 150 (178)
Q Consensus 92 haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~-~~~~~~L~~~i~~l~ 150 (178)
.+-...+.|++++|+|+|.-+. ......+.+---++ .-+++++.+.+..++
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~--------~~~~~~~~~~~~~~~~~~~~el~~~i~~ll 60 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS--------PGLREIFEDGEHIITYNDPEELAEKIEYLL 60 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh--------HHHHHHcCCCCeEEEECCHHHHHHHHHHHH
Confidence 3455689999999999996322 23444443332333 348999999999885
No 291
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=62.42 E-value=38 Score=30.09 Aligned_cols=30 Identities=17% Similarity=0.427 Sum_probs=25.6
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
..+|++||+||.+..... ...+|+|-|+..
T Consensus 63 ~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s 92 (538)
T PRK15424 63 ERCDAIIAAGSNGAYLKS-RLSVPVILIKPS 92 (538)
T ss_pred CCCcEEEECchHHHHHHh-hCCCCEEEecCC
Confidence 478999999998888776 578999999876
No 292
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=62.28 E-value=86 Score=26.66 Aligned_cols=54 Identities=19% Similarity=0.274 Sum_probs=34.9
Q ss_pred HhhhccEE-EecCChHHHHHH-------------HHcCCCEEEEeCC--CCCC-chHHHHHHHHHhCCCEE
Q 042754 82 HLRSASLV-ISHAGSGSIFET-------------LRHGKPLIVVVNE--DLMD-NHQSELAEELAARKHLY 135 (178)
Q Consensus 82 ~~~~adlv-IshaG~~Ti~E~-------------l~~g~P~iviP~~--~~~~-~~Q~~nA~~l~~~G~~~ 135 (178)
+..++|++ |.-|-++|+.-. +++-+|.+++|.. .... .--.+|..+|.+.|+.+
T Consensus 75 l~~~aD~~vVaPaTanTlaKiA~GiaDnLlt~~~~~~~~plviaPamn~~m~~~p~~~~Nl~~L~~~G~~v 145 (390)
T TIGR00521 75 LAKWADLILIAPATANTISKIAHGIADDLVSTTALAASAPIILAPAMNENMYNNPAVQENIKRLKDDGYIF 145 (390)
T ss_pred cccccCEEEEecCCHHHHHHHHcccCCcHHHHHHHHhCCCEEEEeCCChhhcCCHHHHHHHHHHHHCCcEE
Confidence 44677755 666777766543 3345999999983 1111 12246999999999876
No 293
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=62.05 E-value=25 Score=29.73 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=40.8
Q ss_pred hHHHHhhhccEEEecCC------------hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--e--Chhh
Q 042754 78 SIADHLRSASLVISHAG------------SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--A--HPQS 141 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG------------~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~--~~~~ 141 (178)
++++.++.||+|||-=| .+-.--+-.+++|+|++-=. . ..+...+.+.|+.-+ + .+..
T Consensus 276 ~l~~~l~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~--v----~~~~~~~~~~g~~a~~~i~~~~~~ 349 (375)
T TIGR00045 276 DLEQKIKDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGS--L----GDGVDVLPQHGIDAAFSILPSPMP 349 (375)
T ss_pred CHHHHhcCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEecc--c----CCChHHHHhcCccEEEEcCCCCCC
Confidence 58899999999999666 22333455689999998532 1 123455677776532 2 3445
Q ss_pred HHHHHHc
Q 042754 142 LHQVIAG 148 (178)
Q Consensus 142 L~~~i~~ 148 (178)
|.+++.+
T Consensus 350 l~~a~~~ 356 (375)
T TIGR00045 350 LEDALQN 356 (375)
T ss_pred HHHHHHH
Confidence 6665544
No 294
>PRK12743 oxidoreductase; Provisional
Probab=62.01 E-value=29 Score=26.77 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=19.9
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
.++++||+||.+.+.- + ...|.+.++ ++++..-
T Consensus 2 ~k~vlItGas~giG~~---~-----a~~l~~~G~-~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDSGIGKA---C-----ALLLAQQGF-DIGITWH 34 (256)
T ss_pred CCEEEEECCCchHHHH---H-----HHHHHHCCC-EEEEEeC
Confidence 3579999998765522 1 223345675 7765543
No 295
>PRK08264 short chain dehydrogenase; Validated
Probab=61.77 E-value=66 Score=24.28 Aligned_cols=70 Identities=20% Similarity=0.220 Sum_probs=36.6
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEE--EeCh--hhHHHHhh-
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDY--FTFS--SSIADHLR- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v--~~~~--~~~~~~~~- 84 (178)
.++++||+||.+.+ .+.+.+ .+.+. +-|+.++.+...... ...++.+ .+.. .++..++.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l---------~~~G~-~~V~~~~r~~~~~~~-----~~~~~~~~~~D~~~~~~~~~~~~~ 70 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQL---------LARGA-AKVYAAARDPESVTD-----LGPRVVPLQLDVTDPASVAAAAEA 70 (238)
T ss_pred CCEEEEECCCchHHHHHHHHH---------HHCCc-ccEEEEecChhhhhh-----cCCceEEEEecCCCHHHHHHHHHh
Confidence 46899999987654 233332 34453 345555654321110 0122332 2332 22444444
Q ss_pred --hccEEEecCCh
Q 042754 85 --SASLVISHAGS 95 (178)
Q Consensus 85 --~adlvIshaG~ 95 (178)
..|++|+-+|.
T Consensus 71 ~~~id~vi~~ag~ 83 (238)
T PRK08264 71 ASDVTILVNNAGI 83 (238)
T ss_pred cCCCCEEEECCCc
Confidence 47999999997
No 296
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=61.68 E-value=61 Score=27.21 Aligned_cols=29 Identities=31% Similarity=0.430 Sum_probs=20.8
Q ss_pred hccEEEecCChHHHHHHH---H---------------------cCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETL---R---------------------HGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l---~---------------------~g~P~iviP~~ 114 (178)
.+|+||.=|| |+++++. + ..+|.|.||..
T Consensus 84 ~~D~IIaiGG-GS~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 136 (383)
T cd08186 84 GAQAVIAIGG-GSPIDSAKSAAILLEHPGKTARDLYEFKFTPEKALPLIAINLT 136 (383)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHhCCCCcHHHHhCCCcccCCCCCEEEEeCC
Confidence 6899999877 5555542 1 15799999975
No 297
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=61.68 E-value=27 Score=26.92 Aligned_cols=32 Identities=13% Similarity=0.224 Sum_probs=19.4
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.+.+|||+||.+.+.- + ...|...++ ++++..
T Consensus 6 ~~~vlItGas~~iG~~---i-----a~~l~~~G~-~v~~~~ 37 (257)
T PRK07067 6 GKVALLTGAASGIGEA---V-----AERYLAEGA-RVVIAD 37 (257)
T ss_pred CCEEEEeCCCchHHHH---H-----HHHHHHcCC-EEEEEc
Confidence 4689999998765532 1 223345675 766553
No 298
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=61.60 E-value=84 Score=26.40 Aligned_cols=78 Identities=18% Similarity=0.176 Sum_probs=38.8
Q ss_pred CCCCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccc-----ccccccCCcceEEEEeCh--hh
Q 042754 7 SVSLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVP-----TKSLGEDGLMAVDYFTFS--SS 78 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~-----~~~~~~~~~~nv~v~~~~--~~ 78 (178)
.+.....|||++||...+ .+.+.+ ...++ +|+...-...... ...........+...+.. +.
T Consensus 56 ~~~~~~kVLVtGatG~IG~~l~~~L---------l~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 125 (390)
T PLN02657 56 KEPKDVTVLVVGATGYIGKFVVREL---------VRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADS 125 (390)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHH---------HHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHH
Confidence 344456899999975433 233333 34565 7666543321110 000000011233334443 23
Q ss_pred HHHHhh----hccEEEecCC
Q 042754 79 IADHLR----SASLVISHAG 94 (178)
Q Consensus 79 ~~~~~~----~adlvIshaG 94 (178)
+..++. .+|+||+.+|
T Consensus 126 l~~~~~~~~~~~D~Vi~~aa 145 (390)
T PLN02657 126 LRKVLFSEGDPVDVVVSCLA 145 (390)
T ss_pred HHHHHHHhCCCCcEEEECCc
Confidence 666676 4899998766
No 299
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=61.51 E-value=18 Score=29.05 Aligned_cols=83 Identities=17% Similarity=0.228 Sum_probs=43.8
Q ss_pred CCCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc---ccccc-CCcceEEEEeChh--hHHH
Q 042754 8 VSLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT---KSLGE-DGLMAVDYFTFSS--SIAD 81 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~---~~~~~-~~~~nv~v~~~~~--~~~~ 81 (178)
+...++++|||.|.|.+.-+ .+.|++.++ +++++.=..+.... ..... .....+...+..+ +...
T Consensus 3 ~~~~~~~lITGASsGIG~~~--------A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~ 73 (265)
T COG0300 3 PMKGKTALITGASSGIGAEL--------AKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALER 73 (265)
T ss_pred CCCCcEEEEECCCchHHHHH--------HHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHH
Confidence 34578999999999876322 234466676 66654433321111 00000 0112334444432 2333
Q ss_pred Hhh-------hccEEEecCChHHHH
Q 042754 82 HLR-------SASLVISHAGSGSIF 99 (178)
Q Consensus 82 ~~~-------~adlvIshaG~~Ti~ 99 (178)
+.. ..|+.|-.||.|+.-
T Consensus 74 l~~~l~~~~~~IdvLVNNAG~g~~g 98 (265)
T COG0300 74 LEDELKERGGPIDVLVNNAGFGTFG 98 (265)
T ss_pred HHHHHHhcCCcccEEEECCCcCCcc
Confidence 332 489999999988643
No 300
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=61.25 E-value=11 Score=29.94 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=24.7
Q ss_pred hccEEEecCChHHHHHHHHc----CCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFETLRH----GKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~----g~P~iviP~~ 114 (178)
.+|+||+-||=||+..++.. ++|.+-|-..
T Consensus 25 ~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G 58 (246)
T PRK04761 25 EADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRG 58 (246)
T ss_pred cCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCC
Confidence 47999999999999988664 6898877643
No 301
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=61.22 E-value=15 Score=32.72 Aligned_cols=52 Identities=17% Similarity=0.270 Sum_probs=36.0
Q ss_pred hhccEEEecCChHHHHHHHH----cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHHccC
Q 042754 84 RSASLVISHAGSGSIFETLR----HGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIAGMD 150 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~~l~ 150 (178)
..+|++|+-||=||+..+.. .++|++-|-.. ..|+....+++++.+.|+++.
T Consensus 347 ~~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G---------------~lGFL~~~~~~~~~~~l~~~~ 402 (569)
T PRK14076 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMG---------------TVGFLTEFSKEEIFKAIDSII 402 (569)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCC---------------CCCcCcccCHHHHHHHHHHHH
Confidence 36899999999999999977 37898877542 134333445566666666553
No 302
>PRK06523 short chain dehydrogenase; Provisional
Probab=61.06 E-value=59 Score=24.97 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=19.5
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.+++|||+||.|.+. +.+ .|.+.++ ++++..
T Consensus 9 ~k~vlItGas~gIG~~ia~---------~l~~~G~-~v~~~~ 40 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVA---------RLLEAGA-RVVTTA 40 (260)
T ss_pred CCEEEEECCCCchhHHHHH---------HHHHCCC-EEEEEe
Confidence 478999999876542 332 3345676 766543
No 303
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=61.01 E-value=67 Score=27.28 Aligned_cols=91 Identities=22% Similarity=0.289 Sum_probs=57.9
Q ss_pred hhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHH--HH--HhCCCE-EEeChhhHHHHHHccC
Q 042754 76 SSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAE--EL--AARKHL-YCAHPQSLHQVIAGMD 150 (178)
Q Consensus 76 ~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~--~l--~~~G~~-~~~~~~~L~~~i~~l~ 150 (178)
..++.++|..+|++||-=. +...|.+.+.+|+|+.-. +.+|....+ .+ +...-| +.-+.++|.++|....
T Consensus 277 ~~di~dll~~sDiLITDyS-Sv~fdf~~l~KPiify~~----D~~~y~~~rg~~~d~~~~~Pg~~~~~~~~li~ai~~~~ 351 (388)
T COG1887 277 NADINDLLLVSDILITDYS-SVIFDFMLLDKPIIFYTY----DLEQYDELRGFYLDYKFEAPGEVVETQEELIDAIKPYD 351 (388)
T ss_pred chhHHHHHhhhCEEEeech-HHHHHHHHhcCcEEEEec----ChHHHHhhhhhhhhHHhcCCccccccHHHHHHHHHhhh
Confidence 3469999999999999755 688999999999998643 345552211 11 111112 1236667777766543
Q ss_pred -------------cccCCCCCCCChh-HHHHHHHH
Q 042754 151 -------------LESLLPYQPGDAT-PVAKLINR 171 (178)
Q Consensus 151 -------------~~~~~~~~~~~~~-~i~~~i~~ 171 (178)
.....++..++++ ++.+.+.+
T Consensus 352 ~~~~~~~~k~~~~~~~~~~~~dg~ss~ri~~~i~~ 386 (388)
T COG1887 352 EDGNYDLEKLRVFNDKFNSYEDGRSSERILKLIFK 386 (388)
T ss_pred cccchhHHHHHHHHHhhcccccccHHHHHHHHHhc
Confidence 2345566666666 88777654
No 304
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=60.87 E-value=19 Score=32.13 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=39.7
Q ss_pred CCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEEeCh------hhHH
Q 042754 10 LKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYFTFS------SSIA 80 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~~~~------~~~~ 80 (178)
..++||||||+..++ ++.+.+ .+.+. +-++..+.+++.... .+.....++.++..|+ +.+.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qi---------l~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~ 318 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQI---------LKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVE 318 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHH---------HhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHH
Confidence 467999999865443 454444 22343 455556665432211 0000111133333333 2388
Q ss_pred HHhhh--ccEEEecC
Q 042754 81 DHLRS--ASLVISHA 93 (178)
Q Consensus 81 ~~~~~--adlvIsha 93 (178)
.+|.. .|+|+|.|
T Consensus 319 ~~~~~~kvd~VfHAA 333 (588)
T COG1086 319 RAMEGHKVDIVFHAA 333 (588)
T ss_pred HHHhcCCCceEEEhh
Confidence 88988 99999965
No 305
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=60.59 E-value=9.7 Score=29.66 Aligned_cols=17 Identities=6% Similarity=0.235 Sum_probs=12.4
Q ss_pred HHhhhccEEEecCChHH
Q 042754 81 DHLRSASLVISHAGSGS 97 (178)
Q Consensus 81 ~~~~~adlvIshaG~~T 97 (178)
+.+...|++|+-||.+.
T Consensus 76 ~~~g~iDiLVnnAgv~d 92 (227)
T TIGR02114 76 ELVQEHDILIHSMAVSD 92 (227)
T ss_pred HHcCCCCEEEECCEecc
Confidence 33456899999999643
No 306
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=60.58 E-value=48 Score=30.00 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=13.0
Q ss_pred HHHHhhhccEEEecCCh
Q 042754 79 IADHLRSASLVISHAGS 95 (178)
Q Consensus 79 ~~~~~~~adlvIshaG~ 95 (178)
+..++..+|+|||-||.
T Consensus 376 l~~~l~~~D~ViHlAa~ 392 (660)
T PRK08125 376 IEYHIKKCDVVLPLVAI 392 (660)
T ss_pred HHHHhcCCCEEEECccc
Confidence 34567889999997763
No 307
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.46 E-value=45 Score=25.53 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=18.7
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
+.+|||+||.+.+. +.+. |.+.++ ++++..
T Consensus 3 k~vlItG~sg~iG~~la~~---------L~~~g~-~vi~~~ 33 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARA---------LAAAGF-DLAIND 33 (256)
T ss_pred cEEEEeCCCchHHHHHHHH---------HHHCCC-EEEEEe
Confidence 67999999876542 3333 345575 766544
No 308
>PRK06482 short chain dehydrogenase; Provisional
Probab=60.28 E-value=34 Score=26.68 Aligned_cols=13 Identities=23% Similarity=0.447 Sum_probs=10.2
Q ss_pred cEEEEEeCCccHH
Q 042754 12 RIVFVTVGTTCFD 24 (178)
Q Consensus 12 ~~ilVt~Gs~~~~ 24 (178)
+.+|||+||.+.+
T Consensus 3 k~vlVtGasg~IG 15 (276)
T PRK06482 3 KTWFITGASSGFG 15 (276)
T ss_pred CEEEEecCCCHHH
Confidence 5799999987554
No 309
>PRK10342 glycerate kinase I; Provisional
Probab=60.27 E-value=33 Score=29.15 Aligned_cols=65 Identities=17% Similarity=0.270 Sum_probs=40.9
Q ss_pred hHHHHhhhccEEEecCC------------hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--e--Chhh
Q 042754 78 SIADHLRSASLVISHAG------------SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--A--HPQS 141 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG------------~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~--~~~~ 141 (178)
++++.++.||+|||-=| .+-.--+-.+++|+|++-=. . ..+...+.+.|+..+ + .+..
T Consensus 277 ~l~~~l~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~--~----~~~~~~~~~~g~~av~~i~~~~~~ 350 (381)
T PRK10342 277 NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGS--L----TDDVGVVHQHGIDAVFSVLTSIGT 350 (381)
T ss_pred CHHHHhccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEecc--c----CCChHHHHhcCceEEEEcCCCCCC
Confidence 58999999999999655 12233456689999998632 1 123355777777532 1 3445
Q ss_pred HHHHHHc
Q 042754 142 LHQVIAG 148 (178)
Q Consensus 142 L~~~i~~ 148 (178)
|.+++.+
T Consensus 351 l~~a~~~ 357 (381)
T PRK10342 351 LDEAFRG 357 (381)
T ss_pred HHHHHHH
Confidence 5555544
No 310
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=60.21 E-value=7.1 Score=36.30 Aligned_cols=65 Identities=9% Similarity=0.075 Sum_probs=42.8
Q ss_pred hhHHHHhhhccEEEecC---ChH-HHHHHHHcCCC---EEEEeCCCCCCchHHHHHHHHHhCCCEEE---eChhhHHHHH
Q 042754 77 SSIADHLRSASLVISHA---GSG-SIFETLRHGKP---LIVVVNEDLMDNHQSELAEELAARKHLYC---AHPQSLHQVI 146 (178)
Q Consensus 77 ~~~~~~~~~adlvIsha---G~~-Ti~E~l~~g~P---~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---~~~~~L~~~i 146 (178)
+++..+|+.||+++.-+ |.| ++.|++++|+| .+++..... .++.+ ..+ ++. .+++.++++|
T Consensus 367 ~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G-------~~~~l-~~~-allVnP~D~~~lA~AI 437 (797)
T PLN03063 367 NYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG-------AGQSL-GAG-ALLVNPWNITEVSSAI 437 (797)
T ss_pred HHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcC-------chhhh-cCC-eEEECCCCHHHHHHHH
Confidence 35889999999999754 554 77899999999 444554321 11112 112 333 3778888888
Q ss_pred HccC
Q 042754 147 AGMD 150 (178)
Q Consensus 147 ~~l~ 150 (178)
.+++
T Consensus 438 ~~aL 441 (797)
T PLN03063 438 KEAL 441 (797)
T ss_pred HHHH
Confidence 7764
No 311
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.10 E-value=41 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=20.6
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGR 53 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~ 53 (178)
.++++||+||.|.+. +.+ .|.+.++ ++++....
T Consensus 7 ~k~~lItGas~gIG~~~a~---------~l~~~G~-~v~~~~~~ 40 (255)
T PRK06463 7 GKVALITGGTRGIGRAIAE---------AFLREGA-KVAVLYNS 40 (255)
T ss_pred CCEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEEeCC
Confidence 478999999876553 322 3345675 77665443
No 312
>PRK05872 short chain dehydrogenase; Provisional
Probab=59.61 E-value=31 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=21.2
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..+++|||+||.|.+.-. ...|...+. ++++ ++.+
T Consensus 8 ~gk~vlItGas~gIG~~i--------a~~l~~~G~-~V~~-~~r~ 42 (296)
T PRK05872 8 AGKVVVVTGAARGIGAEL--------ARRLHARGA-KLAL-VDLE 42 (296)
T ss_pred CCCEEEEECCCchHHHHH--------HHHHHHCCC-EEEE-EeCC
Confidence 457899999988665321 223345675 6544 5554
No 313
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=59.59 E-value=48 Score=27.65 Aligned_cols=29 Identities=28% Similarity=0.477 Sum_probs=22.8
Q ss_pred hccEEEecCChHHHHHH-----HHcCCCEEEEeCC
Q 042754 85 SASLVISHAGSGSIFET-----LRHGKPLIVVVNE 114 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~ 114 (178)
.+|+||.=|| |+++++ ...++|.|.||..
T Consensus 84 ~~d~IIavGG-Gsv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 84 GCDVVIGIGG-GKTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred CCCEEEEecC-hHHHHHHHHHHHHcCCCEEEeCCc
Confidence 6899999988 566664 3348999999975
No 314
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=59.54 E-value=31 Score=26.68 Aligned_cols=35 Identities=11% Similarity=0.276 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..+++|||+||.|.+.- + ...|.+.++ +|++ ++.+
T Consensus 5 ~~k~vlVtGas~gIG~~---i-----a~~l~~~G~-~V~~-~~r~ 39 (263)
T PRK06200 5 HGQVALITGGGSGIGRA---L-----VERFLAEGA-RVAV-LERS 39 (263)
T ss_pred CCCEEEEeCCCchHHHH---H-----HHHHHHCCC-EEEE-EeCC
Confidence 35789999998866532 1 223345676 7655 4543
No 315
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=59.33 E-value=60 Score=22.88 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=35.7
Q ss_pred EEEeChhhHHHHhhhccEEE-ecCChHHHHHHHHc---------CC-CEEEEeCCCCCCchHHHHHHHHHhCCCE
Q 042754 71 DYFTFSSSIADHLRSASLVI-SHAGSGSIFETLRH---------GK-PLIVVVNEDLMDNHQSELAEELAARKHL 134 (178)
Q Consensus 71 ~v~~~~~~~~~~~~~adlvI-shaG~~Ti~E~l~~---------g~-P~iviP~~~~~~~~Q~~nA~~l~~~G~~ 134 (178)
.+..+......++..||.+| .-||.||+.|.... .+ |+|++-..... ++=...-+.+.+.|..
T Consensus 39 ~~~~~~~Rk~~m~~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w-~~l~~~l~~~~~~g~i 112 (133)
T PF03641_consen 39 IVDDMFERKEIMIESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFW-DPLLEFLDRMIEEGFI 112 (133)
T ss_dssp EESSHHHHHHHHHHHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCC-HHHHHHHHHHHHTTSS
T ss_pred EeCChHHHHHHHHHhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchH-HHHHHHHHHHHHCCCC
Confidence 33333444556678888765 55677899887542 44 99987533111 1222334466777754
No 316
>PRK06484 short chain dehydrogenase; Validated
Probab=59.31 E-value=35 Score=29.48 Aligned_cols=36 Identities=28% Similarity=0.354 Sum_probs=21.7
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
...+.+|||+||.|.+.- + ...|.+.++ +|++. +.+
T Consensus 267 ~~~k~~lItGas~gIG~~---~-----a~~l~~~G~-~V~~~-~r~ 302 (520)
T PRK06484 267 ESPRVVAITGGARGIGRA---V-----ADRFAAAGD-RLLII-DRD 302 (520)
T ss_pred cCCCEEEEECCCcHHHHH---H-----HHHHHHCCC-EEEEE-eCC
Confidence 346789999998876532 1 223455675 66554 443
No 317
>PRK05876 short chain dehydrogenase; Provisional
Probab=59.16 E-value=31 Score=27.24 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=20.4
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.+++|||+||.|.+.- + .+.|...++ ++++ ++.+
T Consensus 6 ~k~vlVTGas~gIG~a---l-----a~~La~~G~-~Vv~-~~r~ 39 (275)
T PRK05876 6 GRGAVITGGASGIGLA---T-----GTEFARRGA-RVVL-GDVD 39 (275)
T ss_pred CCEEEEeCCCchHHHH---H-----HHHHHHCCC-EEEE-EeCC
Confidence 5789999998765422 2 223345676 7654 4443
No 318
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=58.67 E-value=31 Score=26.35 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=37.6
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEE--eCh--hhHHHHhh
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYF--TFS--SSIADHLR 84 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~--~~~--~~~~~~~~ 84 (178)
++++||+||.+.+. +.+ .|.+.++ ++++..+.+...... ......+.++.++ +.. .++..++.
T Consensus 5 ~~vlItGa~g~iG~~~a~---------~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 74 (250)
T PRK08063 5 KVALVTGSSRGIGKAIAL---------RLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFA 74 (250)
T ss_pred CEEEEeCCCchHHHHHHH---------HHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH
Confidence 68999999876543 322 3345675 777655544321000 0000011233332 222 23444444
Q ss_pred -------hccEEEecCCh
Q 042754 85 -------SASLVISHAGS 95 (178)
Q Consensus 85 -------~adlvIshaG~ 95 (178)
..|++|+-+|.
T Consensus 75 ~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 75 QIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHcCCCCEEEECCCC
Confidence 46999999985
No 319
>PRK09072 short chain dehydrogenase; Provisional
Probab=58.61 E-value=32 Score=26.66 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=19.1
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.+.++||+||.+.+ .+.+. +...++ +|++..
T Consensus 5 ~~~vlItG~s~~iG~~ia~~---------l~~~G~-~V~~~~ 36 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEA---------LAAAGA-RLLLVG 36 (263)
T ss_pred CCEEEEECCCchHHHHHHHH---------HHHCCC-EEEEEE
Confidence 56899999987654 23333 344575 765543
No 320
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=58.51 E-value=24 Score=25.88 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=19.7
Q ss_pred hhccEEEecCChHHHHH---HHHcCCCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFE---TLRHGKPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E---~l~~g~P~iviP~~~ 115 (178)
..++++|.-||...-.- +-..-+|.|-+|...
T Consensus 54 ~~~~viIa~AG~~a~Lpgvva~~t~~PVIgvP~~~ 88 (150)
T PF00731_consen 54 RGADVIIAVAGMSAALPGVVASLTTLPVIGVPVSS 88 (150)
T ss_dssp TTESEEEEEEESS--HHHHHHHHSSS-EEEEEE-S
T ss_pred CCCEEEEEECCCcccchhhheeccCCCEEEeecCc
Confidence 45789999888643222 233578999999763
No 321
>PRK08226 short chain dehydrogenase; Provisional
Probab=58.42 E-value=29 Score=26.83 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=19.9
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.++++||+||.+.+. +.+ .|...++ +++++ +..
T Consensus 6 ~~~~lItG~s~giG~~la~---------~l~~~G~-~Vv~~-~r~ 39 (263)
T PRK08226 6 GKTALITGALQGIGEGIAR---------VFARHGA-NLILL-DIS 39 (263)
T ss_pred CCEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEe-cCC
Confidence 578999999876542 332 3344575 75544 443
No 322
>PRK12829 short chain dehydrogenase; Provisional
Probab=58.28 E-value=41 Score=25.82 Aligned_cols=77 Identities=9% Similarity=0.084 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEEeChh--hHHHHh--
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYFTFSS--SIADHL-- 83 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~~~~~--~~~~~~-- 83 (178)
+.+++|||+|+.+.+... .+.|...++ +| +.++.+...... .........+...++.+ .+..++
T Consensus 10 ~~~~vlItGa~g~iG~~~--------a~~L~~~g~-~V-~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 79 (264)
T PRK12829 10 DGLRVLVTGGASGIGRAI--------AEAFAEAGA-RV-HVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDT 79 (264)
T ss_pred CCCEEEEeCCCCcHHHHH--------HHHHHHCCC-EE-EEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHH
Confidence 347899999987655321 123344565 64 455543211110 00000111223334432 233333
Q ss_pred -----hhccEEEecCChH
Q 042754 84 -----RSASLVISHAGSG 96 (178)
Q Consensus 84 -----~~adlvIshaG~~ 96 (178)
..+|.||+-+|..
T Consensus 80 ~~~~~~~~d~vi~~ag~~ 97 (264)
T PRK12829 80 AVERFGGLDVLVNNAGIA 97 (264)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 3689999998864
No 323
>PRK08267 short chain dehydrogenase; Provisional
Probab=58.13 E-value=34 Score=26.36 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=18.2
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
+++|||+||.+.+ .+.+.+ ...++ ++++..
T Consensus 2 k~vlItGasg~iG~~la~~l---------~~~G~-~V~~~~ 32 (260)
T PRK08267 2 KSIFITGAASGIGRATALLF---------AAEGW-RVGAYD 32 (260)
T ss_pred cEEEEeCCCchHHHHHHHHH---------HHCCC-eEEEEe
Confidence 5799999987654 233333 44565 666543
No 324
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=57.98 E-value=76 Score=25.25 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=14.6
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
.+..++..+|.|||-||.
T Consensus 69 ~~~~~~~~~d~Vih~A~~ 86 (322)
T PLN02662 69 SFDSVVDGCEGVFHTASP 86 (322)
T ss_pred hHHHHHcCCCEEEEeCCc
Confidence 367778899999998873
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.94 E-value=39 Score=25.69 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=36.5
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc-cccCCcceEEEE--eCh--hhHHHHhh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS-LGEDGLMAVDYF--TFS--SSIADHLR 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~-~~~~~~~nv~v~--~~~--~~~~~~~~ 84 (178)
.+++|||+||.+.+. +.+. |.+.++ + |+.++.+....... .......++.++ +.. .++..++.
T Consensus 5 ~~~vlItGasg~iG~~l~~~---------l~~~G~-~-V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARR---------FAAEGA-R-VVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHH---------HHHCCC-E-EEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 468999999876543 3333 345575 7 45556543211100 000001123333 222 22444444
Q ss_pred h-------ccEEEecCCh
Q 042754 85 S-------ASLVISHAGS 95 (178)
Q Consensus 85 ~-------adlvIshaG~ 95 (178)
. .|++|+.+|.
T Consensus 74 ~~~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 74 AALERFGSVDILVNNAGT 91 (251)
T ss_pred HHHHHhCCCCEEEECCCC
Confidence 3 5999999985
No 326
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.79 E-value=45 Score=28.38 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
..++++||+|+.+.+... .+.|...+. ++++..
T Consensus 209 ~g~~vlItGasggIG~~l--------a~~l~~~Ga-~vi~~~ 241 (450)
T PRK08261 209 AGKVALVTGAARGIGAAI--------AEVLARDGA-HVVCLD 241 (450)
T ss_pred CCCEEEEecCCCHHHHHH--------HHHHHHCCC-EEEEEe
Confidence 357899999987665322 123345575 766653
No 327
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=57.67 E-value=1.1e+02 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=21.0
Q ss_pred ccEEEecCChHHHHHH-------HHcCCCEEEEeCC
Q 042754 86 ASLVISHAGSGSIFET-------LRHGKPLIVVVNE 114 (178)
Q Consensus 86 adlvIshaG~~Ti~E~-------l~~g~P~iviP~~ 114 (178)
.|+||.=|| |++..+ ...|+|.|.||..
T Consensus 86 ~d~IIaiGG-Gsv~D~ak~vA~~~~rgip~i~VPTT 120 (345)
T cd08195 86 KSLIIALGG-GVVGDLAGFVAATYMRGIDFIQIPTT 120 (345)
T ss_pred CCeEEEECC-hHHHhHHHHHHHHHhcCCCeEEcchh
Confidence 389999888 555543 2459999999975
No 328
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.67 E-value=41 Score=25.65 Aligned_cols=32 Identities=22% Similarity=0.466 Sum_probs=20.2
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
.++++||+||.+.+. +.+ .|.+.++ ++++...
T Consensus 5 ~k~ilItGas~gIG~~la~---------~l~~~G~-~vv~~~~ 37 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIAR---------AFAREGA-RVVVNYH 37 (253)
T ss_pred CCEEEEeCCCCcHHHHHHH---------HHHHCCC-eEEEEcC
Confidence 478999999876553 322 2345576 7776544
No 329
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=57.62 E-value=36 Score=26.13 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=20.6
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..+.+|||+||.+.+. +.+ .|.+.++ ++++ ++.+
T Consensus 8 ~~k~~lItGas~giG~~ia~---------~L~~~G~-~vvl-~~r~ 42 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLAT---------GLAEYGA-EIII-NDIT 42 (254)
T ss_pred CCCEEEEECCCChHHHHHHH---------HHHHcCC-EEEE-EcCC
Confidence 3578999999876542 322 3345575 6665 4443
No 330
>PLN03139 formate dehydrogenase; Provisional
Probab=57.55 E-value=41 Score=28.55 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=16.4
Q ss_pred hhhHHHHhhhccEEEecCCh
Q 042754 76 SSSIADHLRSASLVISHAGS 95 (178)
Q Consensus 76 ~~~~~~~~~~adlvIshaG~ 95 (178)
..++.++++.||+|+.|.-.
T Consensus 246 ~~~l~ell~~sDvV~l~lPl 265 (386)
T PLN03139 246 EEDLDAMLPKCDVVVINTPL 265 (386)
T ss_pred cCCHHHHHhhCCEEEEeCCC
Confidence 34689999999999998653
No 331
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=57.36 E-value=46 Score=28.55 Aligned_cols=14 Identities=14% Similarity=-0.026 Sum_probs=11.0
Q ss_pred HHhhhccEEEecCC
Q 042754 81 DHLRSASLVISHAG 94 (178)
Q Consensus 81 ~~~~~adlvIshaG 94 (178)
..+..+|+|||-|+
T Consensus 180 ~~~~~~D~ViHlAa 193 (436)
T PLN02166 180 PILLEVDQIYHLAC 193 (436)
T ss_pred ccccCCCEEEECce
Confidence 34568999999886
No 332
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=57.27 E-value=45 Score=25.97 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=13.1
Q ss_pred HHHHhhhccEEEecCCh
Q 042754 79 IADHLRSASLVISHAGS 95 (178)
Q Consensus 79 ~~~~~~~adlvIshaG~ 95 (178)
....+..+|.||+-+|.
T Consensus 51 ~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 51 ESEALEGADAVINLAGE 67 (292)
T ss_pred hhhhcCCCCEEEECCCC
Confidence 34566889999998874
No 333
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=57.05 E-value=22 Score=24.72 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=33.2
Q ss_pred hhHHHHhhhccEEEecCChH----HHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhC
Q 042754 77 SSIADHLRSASLVISHAGSG----SIFETLRHGKPLIVVVNEDLMDNHQSELAEELAAR 131 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~~----Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~ 131 (178)
+++.+++..+|++|-=.-.. .+-.++.+|+|.|+--..+ ..+|....+.+.+.
T Consensus 59 ~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~~g~~~ViGTTG~--~~~~~~~l~~~a~~ 115 (124)
T PF01113_consen 59 DDLEELLEEADVVIDFTNPDAVYDNLEYALKHGVPLVIGTTGF--SDEQIDELEELAKK 115 (124)
T ss_dssp S-HHHHTTH-SEEEEES-HHHHHHHHHHHHHHT-EEEEE-SSS--HHHHHHHHHHHTTT
T ss_pred hhHHHhcccCCEEEEcCChHHhHHHHHHHHhCCCCEEEECCCC--CHHHHHHHHHHhcc
Confidence 56889999999998655433 3445677899999754332 35676777776666
No 334
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=56.81 E-value=82 Score=23.68 Aligned_cols=67 Identities=10% Similarity=0.180 Sum_probs=34.6
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--eChhhHHHH---hh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF--TFSSSIADH---LR 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~--~~~~~~~~~---~~ 84 (178)
.++++|++||.+.+. +.+ .|.+.++ ++++ ++.+..... ..++..+ +..+.+..+ +.
T Consensus 5 ~k~~lVtGas~~iG~~ia~---------~l~~~G~-~v~~-~~r~~~~~~-------~~~~~~~~~D~~~~~~~~~~~~~ 66 (235)
T PRK06550 5 TKTVLITGAASGIGLAQAR---------AFLAQGA-QVYG-VDKQDKPDL-------SGNFHFLQLDLSDDLEPLFDWVP 66 (235)
T ss_pred CCEEEEcCCCchHHHHHHH---------HHHHCCC-EEEE-EeCCccccc-------CCcEEEEECChHHHHHHHHHhhC
Confidence 468999999875442 322 3345565 6554 444321110 1123322 322222333 45
Q ss_pred hccEEEecCCh
Q 042754 85 SASLVISHAGS 95 (178)
Q Consensus 85 ~adlvIshaG~ 95 (178)
..|++|+.+|.
T Consensus 67 ~id~lv~~ag~ 77 (235)
T PRK06550 67 SVDILCNTAGI 77 (235)
T ss_pred CCCEEEECCCC
Confidence 67999999984
No 335
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=56.68 E-value=35 Score=28.99 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=50.4
Q ss_pred ceEEEEe--ChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE---EE---eCh
Q 042754 68 MAVDYFT--FSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL---YC---AHP 139 (178)
Q Consensus 68 ~nv~v~~--~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~---~~---~~~ 139 (178)
.++.+.+ |...+...+++||++|+ .=+-++.=++++|+|.|.+-+ |..+...+++.|.- .. .+.
T Consensus 266 ~~i~~~~d~~~~~~~~~l~~~dl~Vg-~R~HsaI~al~~g~p~i~i~Y-------~~K~~~l~~~~gl~~~~~~i~~~~~ 337 (385)
T COG2327 266 AEILVSSDEYAEELGGILAACDLIVG-MRLHSAIMALAFGVPAIAIAY-------DPKVRGLMQDLGLPGFAIDIDPLDA 337 (385)
T ss_pred cceEeecchHHHHHHHHhccCceEEe-ehhHHHHHHHhcCCCeEEEee-------cHHHHHHHHHcCCCcccccCCCCch
Confidence 4555543 22235568899999998 466778889999999999876 34566777777765 22 255
Q ss_pred hhHHHHHHcc
Q 042754 140 QSLHQVIAGM 149 (178)
Q Consensus 140 ~~L~~~i~~l 149 (178)
+.+..++.+.
T Consensus 338 ~~l~~~~~e~ 347 (385)
T COG2327 338 EILSAVVLER 347 (385)
T ss_pred HHHHHHHHHH
Confidence 6666665554
No 336
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=56.64 E-value=48 Score=20.89 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=22.0
Q ss_pred CCCcEEEEEeCCc--cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 9 SLKRIVFVTVGTT--CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 9 ~~~~~ilVt~Gs~--~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
|+.++|+|++|-. ....+...+. ..+...+ .+++++|..
T Consensus 1 p~g~rVli~GgR~~~D~~~i~~~Ld-----~~~~~~~--~~~lvhGga 41 (71)
T PF10686_consen 1 PEGMRVLITGGRDWTDHELIWAALD-----KVHARHP--DMVLVHGGA 41 (71)
T ss_pred CCCCEEEEEECCccccHHHHHHHHH-----HHHHhCC--CEEEEECCC
Confidence 3568899999954 3344444441 1223333 466777765
No 337
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=56.50 E-value=78 Score=26.98 Aligned_cols=17 Identities=24% Similarity=0.466 Sum_probs=12.7
Q ss_pred hhccEEEecCChHHHHHH
Q 042754 84 RSASLVISHAGSGSIFET 101 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~ 101 (178)
..+|+||.=|| |+++++
T Consensus 79 ~~~D~IIaiGG-GSviD~ 95 (414)
T cd08190 79 GQFDAFVAVGG-GSVIDT 95 (414)
T ss_pred cCCCEEEEeCC-ccHHHH
Confidence 35899999888 566655
No 338
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.45 E-value=15 Score=30.06 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=26.1
Q ss_pred hhccEEEecCChHHHHHHHHc----CCCEEEEeC
Q 042754 84 RSASLVISHAGSGSIFETLRH----GKPLIVVVN 113 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~----g~P~iviP~ 113 (178)
..+|++|+-||=||+.+++.. ++|.+.|..
T Consensus 56 ~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred cCcCEEEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 468999999999999999864 789998875
No 339
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=56.38 E-value=37 Score=26.14 Aligned_cols=33 Identities=15% Similarity=0.284 Sum_probs=20.5
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.++++||+||.|.+. +.+ .|...++ ++++ ++.+
T Consensus 8 ~k~vlVtGas~gIG~~la~---------~l~~~G~-~v~~-~~r~ 41 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVAL---------RAAAEGA-RVVL-VDRS 41 (260)
T ss_pred CCEEEEeCCCchHHHHHHH---------HHHHCCC-EEEE-EeCc
Confidence 478999999886653 332 3345675 6654 4543
No 340
>PRK07825 short chain dehydrogenase; Provisional
Probab=56.37 E-value=38 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=11.3
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++||||||.|.+
T Consensus 5 ~~~ilVtGasggiG 18 (273)
T PRK07825 5 GKVVAITGGARGIG 18 (273)
T ss_pred CCEEEEeCCCchHH
Confidence 46899999988765
No 341
>PRK07024 short chain dehydrogenase; Provisional
Probab=56.29 E-value=40 Score=26.02 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=19.5
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
+++|||+||.+.+. +.+ .|.+.++ ++++ ++.+
T Consensus 3 ~~vlItGas~gIG~~la~---------~l~~~G~-~v~~-~~r~ 35 (257)
T PRK07024 3 LKVFITGASSGIGQALAR---------EYARQGA-TLGL-VARR 35 (257)
T ss_pred CEEEEEcCCcHHHHHHHH---------HHHHCCC-EEEE-EeCC
Confidence 57999999876543 332 3345575 6554 5554
No 342
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=56.28 E-value=1.1e+02 Score=24.81 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=13.1
Q ss_pred hHHHHhhh--ccEEEecCCh
Q 042754 78 SIADHLRS--ASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG~ 95 (178)
++..++.. .|+||+-||.
T Consensus 74 ~~~~~~~~~~~d~Vih~A~~ 93 (340)
T PLN02653 74 SLRRWLDDIKPDEVYNLAAQ 93 (340)
T ss_pred HHHHHHHHcCCCEEEECCcc
Confidence 35566765 5999999885
No 343
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=56.26 E-value=74 Score=25.86 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=13.8
Q ss_pred hHHHHhhh--ccEEEecCCh
Q 042754 78 SIADHLRS--ASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG~ 95 (178)
++..++.. +|.||+-||.
T Consensus 65 ~~~~~~~~~~~D~Vih~A~~ 84 (355)
T PRK10217 65 ELARVFTEHQPDCVMHLAAE 84 (355)
T ss_pred HHHHHHhhcCCCEEEECCcc
Confidence 36667764 8999999975
No 344
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=55.99 E-value=1.2e+02 Score=25.33 Aligned_cols=29 Identities=17% Similarity=0.335 Sum_probs=21.3
Q ss_pred hcc---EEEecCChHHHHHHH-------HcCCCEEEEeCC
Q 042754 85 SAS---LVISHAGSGSIFETL-------RHGKPLIVVVNE 114 (178)
Q Consensus 85 ~ad---lvIshaG~~Ti~E~l-------~~g~P~iviP~~ 114 (178)
.+| +||.=|| |++..+. ..|+|.|.||..
T Consensus 81 ~~dr~~~IIAvGG-Gsv~D~ak~~A~~~~rgip~I~IPTT 119 (355)
T cd08197 81 GATRRSVIVALGG-GVVGNIAGLLAALLFRGIRLVHIPTT 119 (355)
T ss_pred CCCCCcEEEEECC-cHHHHHHHHHHHHhccCCCEEEecCc
Confidence 455 9999877 6666553 138999999985
No 345
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=55.97 E-value=18 Score=27.64 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=21.4
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.++++||+||.+.+.- + .+.|.+.+. ++++..+..
T Consensus 3 ~k~~lVtG~s~giG~~---~-----a~~l~~~G~-~vv~~~~~~ 37 (246)
T PRK12938 3 QRIAYVTGGMGGIGTS---I-----CQRLHKDGF-KVVAGCGPN 37 (246)
T ss_pred CCEEEEECCCChHHHH---H-----HHHHHHcCC-EEEEEcCCC
Confidence 4689999998765422 2 223345675 777765543
No 346
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=55.88 E-value=72 Score=26.38 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=20.8
Q ss_pred hccEEEec-CChHHHHHHHHcCCCEEEEeC
Q 042754 85 SASLVISH-AGSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 85 ~adlvIsh-aG~~Ti~E~l~~g~P~iviP~ 113 (178)
..|+||++ -..+...-+-.+|+|.+.+..
T Consensus 104 ~pDlvi~d~~~~~~~~~A~~~giP~v~~~~ 133 (401)
T cd03784 104 GPDLVVADPLAFAGAVAAEALGIPAVRLLL 133 (401)
T ss_pred CCCEEEeCcHHHHHHHHHHHhCCCeEEeec
Confidence 56999999 344445556678999998743
No 347
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=55.66 E-value=44 Score=28.26 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=11.5
Q ss_pred hhccEEEecCChHHHHH
Q 042754 84 RSASLVISHAGSGSIFE 100 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E 100 (178)
..+|+||.=|| |+++.
T Consensus 77 ~~~D~IIaiGG-GS~iD 92 (398)
T cd08178 77 FKPDTIIALGG-GSPMD 92 (398)
T ss_pred cCCCEEEEeCC-ccHHH
Confidence 36899999888 44444
No 348
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=55.56 E-value=55 Score=27.27 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=12.7
Q ss_pred hhccEEEecCChHHHHHH
Q 042754 84 RSASLVISHAGSGSIFET 101 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~ 101 (178)
..+|+||.=|| |+++.+
T Consensus 80 ~~~d~IIaiGG-GSviD~ 96 (370)
T cd08192 80 GGCDGVIAFGG-GSALDL 96 (370)
T ss_pred cCCCEEEEeCC-chHHHH
Confidence 56799999877 566554
No 349
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=55.50 E-value=39 Score=30.30 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=15.1
Q ss_pred hHHHHhhhccEEEecCChH
Q 042754 78 SIADHLRSASLVISHAGSG 96 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~ 96 (178)
++...+..+|+||+-+|..
T Consensus 152 sI~~aLggiDiVVn~AG~~ 170 (576)
T PLN03209 152 QIGPALGNASVVICCIGAS 170 (576)
T ss_pred HHHHHhcCCCEEEEccccc
Confidence 4666788999999998853
No 350
>PRK07478 short chain dehydrogenase; Provisional
Probab=55.48 E-value=39 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=20.4
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.++++||+||.|.+. +.+ .|...++ ++++. +.+
T Consensus 6 ~k~~lItGas~giG~~ia~---------~l~~~G~-~v~~~-~r~ 39 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAK---------LFAREGA-KVVVG-ARR 39 (254)
T ss_pred CCEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEE-eCC
Confidence 468999999876653 333 3345676 76554 443
No 351
>PRK07060 short chain dehydrogenase; Provisional
Probab=55.31 E-value=49 Score=25.06 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh--
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR-- 84 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~-- 84 (178)
..++++|++|+.+.+. +.+ .+...++ ++++ ++.+........ .....++...++.+ .+...+.
T Consensus 8 ~~~~~lItGa~g~iG~~~a~---------~l~~~g~-~V~~-~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~ 75 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAV---------ALAQRGA-RVVA-AARNAAALDRLA-GETGCEPLRLDVGDDAAIRAALAAA 75 (245)
T ss_pred CCCEEEEeCCcchHHHHHHH---------HHHHCCC-EEEE-EeCCHHHHHHHH-HHhCCeEEEecCCCHHHHHHHHHHh
Confidence 3468999998765442 222 2344565 6554 554331111100 00112333344432 2444444
Q ss_pred -hccEEEecCChH
Q 042754 85 -SASLVISHAGSG 96 (178)
Q Consensus 85 -~adlvIshaG~~ 96 (178)
..|++|+.+|..
T Consensus 76 ~~~d~vi~~ag~~ 88 (245)
T PRK07060 76 GAFDGLVNCAGIA 88 (245)
T ss_pred CCCCEEEECCCCC
Confidence 479999999863
No 352
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=55.18 E-value=65 Score=25.73 Aligned_cols=115 Identities=22% Similarity=0.334 Sum_probs=63.6
Q ss_pred CCCcEEEEEeCCc--------c--HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh
Q 042754 9 SLKRIVFVTVGTT--------C--FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS 78 (178)
Q Consensus 9 ~~~~~ilVt~Gs~--------~--~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~ 78 (178)
....+|+|=.||. + ..+|...+ +-...|...+. ++++++.+.-.-..... +.+..+.. .
T Consensus 7 kka~rIVVKLGSavit~e~~~~laLgrla~IV---EqV~~L~~~G~-evilVSSGaVA~G~qrL------r~~~~~s~-s 75 (285)
T KOG1154|consen 7 KKAYRIVVKLGSAVITREDTCGLALGRLASIV---EQVSELQRMGR-EVILVSSGAVAFGRQRL------RQELLPSS-S 75 (285)
T ss_pred ccceEEEEEecceEEECCCCccchHHHHHHHH---HHHHHHHhcCc-eEEEEecchhhhhHHHh------hhhhccch-h
Confidence 3467899999974 1 22333333 22446666775 76666554332111110 11111111 1
Q ss_pred HHHHh--------hhccEEEecCChHHHHHHHHc--C--CCEEEEeCCCCCCchHHHHHH----HHHhCCCE
Q 042754 79 IADHL--------RSASLVISHAGSGSIFETLRH--G--KPLIVVVNEDLMDNHQSELAE----ELAARKHL 134 (178)
Q Consensus 79 ~~~~~--------~~adlvIshaG~~Ti~E~l~~--g--~P~iviP~~~~~~~~Q~~nA~----~l~~~G~~ 134 (178)
|.+.+ .+|-..|..+|-.+.||+++. | +-+|.+.++.-.+.+|+.|+. .|-..|+.
T Consensus 76 ~r~~l~~~~~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~vi 147 (285)
T KOG1154|consen 76 MRQTLKPQSELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVI 147 (285)
T ss_pred HHHhhCCccchhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCce
Confidence 22222 336677999999999999984 3 356777776555677888876 34445554
No 353
>PRK06398 aldose dehydrogenase; Validated
Probab=55.09 E-value=22 Score=27.61 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=19.3
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
.+++|||+|+.|.+.- + ...|.+.++ ++++.
T Consensus 6 gk~vlItGas~gIG~~---i-----a~~l~~~G~-~Vi~~ 36 (258)
T PRK06398 6 DKVAIVTGGSQGIGKA---V-----VNRLKEEGS-NVINF 36 (258)
T ss_pred CCEEEEECCCchHHHH---H-----HHHHHHCCC-eEEEE
Confidence 4789999998866532 1 223345675 76654
No 354
>PRK09932 glycerate kinase II; Provisional
Probab=55.08 E-value=43 Score=28.42 Aligned_cols=65 Identities=17% Similarity=0.199 Sum_probs=40.8
Q ss_pred hHHHHhhhccEEEecCC-----------hHHH-HHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE--e--Chhh
Q 042754 78 SIADHLRSASLVISHAG-----------SGSI-FETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC--A--HPQS 141 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG-----------~~Ti-~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~--~--~~~~ 141 (178)
++++.++.||+|||-=| ...+ --+-.+++|+|++-=. .. .+...+.+.|+..+ + .+..
T Consensus 277 ~l~~~l~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~--~~----~~~~~~~~~g~~~~~~i~~~~~~ 350 (381)
T PRK09932 277 NLEQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGV--LG----DGVEVVHQYGIDAVFSILPRLAP 350 (381)
T ss_pred ChHHHhccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEecc--cC----CChHHHHhcCceEEEEcCCCCCC
Confidence 58899999999999666 1122 2345578999998532 11 23455777777532 1 3455
Q ss_pred HHHHHHc
Q 042754 142 LHQVIAG 148 (178)
Q Consensus 142 L~~~i~~ 148 (178)
|.+++.+
T Consensus 351 l~~a~~~ 357 (381)
T PRK09932 351 LAEVLAS 357 (381)
T ss_pred HHHHHHH
Confidence 6666654
No 355
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=54.99 E-value=83 Score=25.77 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=16.9
Q ss_pred hccEEEecCC--hHH--HHHHHHcCCCEEEE
Q 042754 85 SASLVISHAG--SGS--IFETLRHGKPLIVV 111 (178)
Q Consensus 85 ~adlvIshaG--~~T--i~E~l~~g~P~ivi 111 (178)
+-|+||+++- ... ..-+...|+|.+..
T Consensus 85 kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 85 PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 3599999852 222 22344579998875
No 356
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=54.22 E-value=1.6e+02 Score=26.39 Aligned_cols=123 Identities=10% Similarity=0.060 Sum_probs=63.5
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhhhcc
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLRSAS 87 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~~ad 87 (178)
..++|.|.+|++-...+.. +..+.++ ++++..-..+ .+... ......+.+|.+ .+.++...+|
T Consensus 21 ~~k~IgIIGgGqlg~mla~---------aA~~lG~-~Vi~ld~~~~-apa~~----~AD~~~v~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 21 SETVVGVLGGGQLGRMLCQ---------AASQMGI-KVKVLDPLED-CPASS----VAARHVVGSFDDRAAVREFAKRCD 85 (577)
T ss_pred CCCEEEEECCCHHHHHHHH---------HHHHCCC-EEEEEeCCCC-Cchhh----hCceeeeCCCCCHHHHHHHHHHCC
Confidence 4678999999864333322 3345686 7777644322 12111 112233345532 2445567789
Q ss_pred EE---EecCChHHHHHHHHcCCCEEEEeCCCCCC--chHHHHHHHHHhCCCEE-----EeChhhHHHHHHcc
Q 042754 88 LV---ISHAGSGSIFETLRHGKPLIVVVNEDLMD--NHQSELAEELAARKHLY-----CAHPQSLHQVIAGM 149 (178)
Q Consensus 88 lv---IshaG~~Ti~E~l~~g~P~iviP~~~~~~--~~Q~~nA~~l~~~G~~~-----~~~~~~L~~~i~~l 149 (178)
++ +.+-...++..+-..|+|. .|.+.... .|-..--++|.+.|+-. ..+.+++.+.+.++
T Consensus 86 vIt~e~e~v~~~~l~~le~~gi~v--~ps~~al~i~~DK~~~K~~l~~~GIptp~~~~v~~~~el~~~~~~i 155 (577)
T PLN02948 86 VLTVEIEHVDVDTLEALEKQGVDV--QPKSSTIRIIQDKYAQKVHFSKHGIPLPEFMEIDDLESAEKAGDLF 155 (577)
T ss_pred EEEEecCCCCHHHHHHHHhcCCcc--CCCHHHHHHhcCHHHHHHHHHHCCcCCCCeEEeCCHHHHHHHHHhc
Confidence 87 3444455665555677772 34432111 12233334567777653 12566676666665
No 357
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=54.20 E-value=50 Score=24.85 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=19.7
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeC
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGR 53 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~ 53 (178)
.+++|||+||.+.+ .+.+. |...++ ++++....
T Consensus 5 ~~~vlItG~sg~iG~~l~~~---------l~~~G~-~v~~~~~~ 38 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAER---------LAAQGA-NVVINYAS 38 (248)
T ss_pred CCEEEEECCCchHHHHHHHH---------HHHCCC-EEEEEeCC
Confidence 46899999986543 23333 334576 77555543
No 358
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=54.20 E-value=25 Score=28.67 Aligned_cols=65 Identities=26% Similarity=0.238 Sum_probs=33.5
Q ss_pred EEEEeCCcc-HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhh-hccEEEe
Q 042754 14 VFVTVGTTC-FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLR-SASLVIS 91 (178)
Q Consensus 14 ilVt~Gs~~-~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~-~adlvIs 91 (178)
|++|+||.- ...|... |...+. +|++.+=........ .+.++.. .+.+.++.. .||+||.
T Consensus 1 IliTGgTGlIG~~L~~~---------L~~~gh-~v~iltR~~~~~~~~-----~~~~v~~---~~~~~~~~~~~~DavIN 62 (297)
T COG1090 1 ILITGGTGLIGRALTAR---------LRKGGH-QVTILTRRPPKASQN-----LHPNVTL---WEGLADALTLGIDAVIN 62 (297)
T ss_pred CeEeccccchhHHHHHH---------HHhCCC-eEEEEEcCCcchhhh-----cCccccc---cchhhhcccCCCCEEEE
Confidence 467777641 1234333 344554 777776554322211 1223332 223444444 6999999
Q ss_pred cCChH
Q 042754 92 HAGSG 96 (178)
Q Consensus 92 haG~~ 96 (178)
-||..
T Consensus 63 LAG~~ 67 (297)
T COG1090 63 LAGEP 67 (297)
T ss_pred CCCCc
Confidence 99975
No 359
>PRK06172 short chain dehydrogenase; Provisional
Probab=54.19 E-value=41 Score=25.75 Aligned_cols=74 Identities=14% Similarity=0.212 Sum_probs=36.8
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc-cc-cccccCCcceEEEE--eCh--hhHHHHh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV-PT-KSLGEDGLMAVDYF--TFS--SSIADHL 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~-~~-~~~~~~~~~nv~v~--~~~--~~~~~~~ 83 (178)
.++++|++||.+.+. +.+. |.+.+. +++++ +.+... .. .........++..+ +.. .++..++
T Consensus 7 ~k~ilItGas~~iG~~ia~~---------l~~~G~-~v~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~ 75 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALA---------FAREGA-KVVVA-DRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALV 75 (253)
T ss_pred CCEEEEeCCCchHHHHHHHH---------HHHcCC-EEEEE-eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence 478999999876543 3322 344565 75554 443211 10 00000111233332 332 2345555
Q ss_pred hhc-------cEEEecCCh
Q 042754 84 RSA-------SLVISHAGS 95 (178)
Q Consensus 84 ~~a-------dlvIshaG~ 95 (178)
..+ |++|+-+|.
T Consensus 76 ~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 76 EQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHhCCCCEEEECCCC
Confidence 544 999999985
No 360
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=53.96 E-value=44 Score=27.59 Aligned_cols=30 Identities=33% Similarity=0.570 Sum_probs=23.0
Q ss_pred hhccEEEecCChHHHHHH-----HHcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFET-----LRHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~ 114 (178)
..+|+||.=|| |+++++ ...++|.|.||..
T Consensus 75 ~~~D~iIavGG-Gs~~D~aK~ia~~~~~p~i~VPTT 109 (347)
T cd08172 75 NGADVIIGIGG-GKVLDTAKAVADRLGVPVITVPTL 109 (347)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhCCCEEEecCc
Confidence 36899999877 666654 3358999999975
No 361
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=53.90 E-value=57 Score=24.95 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=19.9
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.+++|||+||.+.+ .+.+ .|.+.++ ++++ ++.+
T Consensus 7 ~~~vlItGasg~iG~~la~---------~l~~~G~-~v~~-~~r~ 40 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIAL---------ELARAGA-AVAI-ADLN 40 (262)
T ss_pred CCEEEEECCCChHHHHHHH---------HHHHCCC-eEEE-EeCC
Confidence 47899999987544 2333 3345675 6654 4544
No 362
>PRK06101 short chain dehydrogenase; Provisional
Probab=53.78 E-value=58 Score=24.85 Aligned_cols=73 Identities=19% Similarity=0.262 Sum_probs=35.0
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhh---
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRS--- 85 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~--- 85 (178)
+.++||+||.|.+. +.+. |...++ ++++ ++.+...............+...+.. +++..++..
T Consensus 2 ~~vlItGas~giG~~la~~---------L~~~G~-~V~~-~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 70 (240)
T PRK06101 2 TAVLITGATSGIGKQLALD---------YAKQGW-QVIA-CGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPF 70 (240)
T ss_pred cEEEEEcCCcHHHHHHHHH---------HHhCCC-EEEE-EECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhccc
Confidence 46899999876653 3333 345576 7655 44432110000000001112222332 235566655
Q ss_pred -ccEEEecCCh
Q 042754 86 -ASLVISHAGS 95 (178)
Q Consensus 86 -adlvIshaG~ 95 (178)
-|.+|.++|.
T Consensus 71 ~~d~~i~~ag~ 81 (240)
T PRK06101 71 IPELWIFNAGD 81 (240)
T ss_pred CCCEEEEcCcc
Confidence 3778888874
No 363
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.76 E-value=46 Score=25.03 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=20.6
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCC
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGT 55 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~ 55 (178)
+++|||+||.+.+ .+.+.+ ...++ ++++.+....
T Consensus 7 ~~vlItGasg~iG~~l~~~l---------~~~g~-~v~~~~~~~~ 41 (249)
T PRK12825 7 RVALVTGAARGLGRAIALRL---------ARAGA-DVVVHYRSDE 41 (249)
T ss_pred CEEEEeCCCchHHHHHHHHH---------HHCCC-eEEEEeCCCH
Confidence 5899999987554 333333 34565 7666555543
No 364
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=53.73 E-value=85 Score=26.24 Aligned_cols=17 Identities=24% Similarity=0.413 Sum_probs=12.3
Q ss_pred hhccEEEecCChHHHHHH
Q 042754 84 RSASLVISHAGSGSIFET 101 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~ 101 (178)
..+|+||.=|| ||++.+
T Consensus 80 ~~~D~IIavGG-GSviD~ 96 (375)
T cd08179 80 FEPDWIIALGG-GSPIDA 96 (375)
T ss_pred cCCCEEEEeCC-ccHHHH
Confidence 37799999888 555544
No 365
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=53.35 E-value=2.2e+02 Score=27.58 Aligned_cols=135 Identities=11% Similarity=0.059 Sum_probs=65.2
Q ss_pred CCCcEEEEEeCCc---cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEe-ChhhHHHHhh
Q 042754 9 SLKRIVFVTVGTT---CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFT-FSSSIADHLR 84 (178)
Q Consensus 9 ~~~~~ilVt~Gs~---~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~-~~~~~~~~~~ 84 (178)
.+++.|||.+++. |...-++.-. ..++.++++.++ +++++.-+......... ....+...+ +.+.+.+++.
T Consensus 552 ~~~~kvlvlG~G~~rig~~~efd~~~-v~~i~al~~~G~-~vI~v~~npetvs~d~~---~~D~ly~ep~~~e~vl~i~~ 626 (1050)
T TIGR01369 552 TDKKKVLVLGSGPNRIGQGVEFDYCC-VHAVLALRELGY-ETIMINYNPETVSTDYD---TSDRLYFEPLTFEDVMNIIE 626 (1050)
T ss_pred CCCceEEEecCcccccccccccchHH-HHHHHHHHhCCC-EEEEEecCCcccccccc---ccceEEEecCCHHHHHHHHh
Confidence 4567888888653 2221111111 233567778887 77665443221111100 112222222 2233334443
Q ss_pred --hccEEEecCChHHHH----HHHHcCCCEEEEeCCCCC--CchHHHHHHHHHhCCCEE-----EeChhhHHHHHHcc
Q 042754 85 --SASLVISHAGSGSIF----ETLRHGKPLIVVVNEDLM--DNHQSELAEELAARKHLY-----CAHPQSLHQVIAGM 149 (178)
Q Consensus 85 --~adlvIshaG~~Ti~----E~l~~g~P~iviP~~~~~--~~~Q~~nA~~l~~~G~~~-----~~~~~~L~~~i~~l 149 (178)
..|.||...|..|.. .+-..|+|.+. +.+..+ -.+-....+.+.+.|+-. ..+.+++.+..+++
T Consensus 627 ~e~idgVI~~~gg~~~~~la~~le~~Gi~i~G-~s~~~i~~~~DK~~f~~lL~~~GIp~P~~~~v~s~ee~~~~~~~i 703 (1050)
T TIGR01369 627 LEKPEGVIVQFGGQTPLNLAKALEEAGVPILG-TSPESIDRAEDREKFSELLDELGIPQPKWKTATSVEEAVEFASEI 703 (1050)
T ss_pred hcCCCEEEEccCcHhHHHHHHHHHHCCCcEEC-CCHHHHHHHCCHHHHHHHHHHCCcCCCCeEEECCHHHHHHHHHhc
Confidence 578998777755533 23347888775 322111 011223456677788653 23566666666554
No 366
>PRK08177 short chain dehydrogenase; Provisional
Probab=53.23 E-value=66 Score=24.19 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=35.3
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh----
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR---- 84 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~---- 84 (178)
+.++||+|+.+.+. +.+ .|...++ +|+++. .+......... .....+...+..+ +...++.
T Consensus 2 k~vlItG~sg~iG~~la~---------~l~~~G~-~V~~~~-r~~~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~ 69 (225)
T PRK08177 2 RTALIIGASRGLGLGLVD---------RLLERGW-QVTATV-RGPQQDTALQA-LPGVHIEKLDMNDPASLDQLLQRLQG 69 (225)
T ss_pred CEEEEeCCCchHHHHHHH---------HHHhCCC-EEEEEe-CCCcchHHHHh-ccccceEEcCCCCHHHHHHHHHHhhc
Confidence 57999999876543 322 3345575 766544 33211111000 0011222233221 2333343
Q ss_pred -hccEEEecCChH
Q 042754 85 -SASLVISHAGSG 96 (178)
Q Consensus 85 -~adlvIshaG~~ 96 (178)
..|++|+-+|..
T Consensus 70 ~~id~vi~~ag~~ 82 (225)
T PRK08177 70 QRFDLLFVNAGIS 82 (225)
T ss_pred CCCCEEEEcCccc
Confidence 479999998864
No 367
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=53.14 E-value=46 Score=25.32 Aligned_cols=33 Identities=15% Similarity=0.309 Sum_probs=20.1
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGR 53 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~ 53 (178)
.+++|||+||.+.+. +.+ .|...++ ++++.+..
T Consensus 6 ~~~vlitGasg~iG~~l~~---------~l~~~g~-~v~~~~~~ 39 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAV---------RLAKEGS-LVVVNAKK 39 (252)
T ss_pred CcEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEEeCC
Confidence 478999999875542 332 3345676 77665443
No 368
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=53.11 E-value=78 Score=25.85 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=15.1
Q ss_pred hHHHHhhhccEEEecCC
Q 042754 78 SIADHLRSASLVISHAG 94 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG 94 (178)
+++++++.||+|+-|.=
T Consensus 189 ~l~ell~~sDvv~lh~P 205 (311)
T PRK08410 189 SLEELLKTSDIISIHAP 205 (311)
T ss_pred cHHHHhhcCCEEEEeCC
Confidence 58999999999999864
No 369
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=52.95 E-value=46 Score=25.29 Aligned_cols=14 Identities=21% Similarity=0.235 Sum_probs=10.9
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+.+|||+||.+.+
T Consensus 3 ~~~ilItGas~~iG 16 (250)
T TIGR03206 3 DKTAIVTGGGGGIG 16 (250)
T ss_pred CCEEEEeCCCChHH
Confidence 47899999987654
No 370
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=52.65 E-value=48 Score=27.90 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=21.5
Q ss_pred hhccEEEecCChHHHHHHH---H--------------------cCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL---R--------------------HGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l---~--------------------~g~P~iviP~~ 114 (178)
..||+||.=|| |+++.+. + ..+|.|.||..
T Consensus 87 ~~~D~IiaiGG-GS~iD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTT 139 (383)
T PRK09860 87 NNCDSVISLGG-GSPHDCAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTT 139 (383)
T ss_pred cCCCEEEEeCC-chHHHHHHHHHHHHHCCCCHHHHhCcCccCCCCCCEEEEeCC
Confidence 46899999888 5555542 2 24799999975
No 371
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=52.01 E-value=1.2e+02 Score=24.05 Aligned_cols=69 Identities=16% Similarity=0.090 Sum_probs=35.1
Q ss_pred EEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhccEE
Q 042754 13 IVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSASLV 89 (178)
Q Consensus 13 ~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~adlv 89 (178)
.||||+|+...+ .+.+.+ ...++ +|+... .+........ .....+...+.. +++.+.+..+|.|
T Consensus 2 ~vlItG~~G~iG~~l~~~L---------~~~g~-~V~~~~-r~~~~~~~~~--~~~~~~~~~D~~~~~~l~~~~~~~d~v 68 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLL---------LEQGE-EVRVLV-RPTSDRRNLE--GLDVEIVEGDLRDPASLRKAVAGCRAL 68 (328)
T ss_pred eEEEECCccchhHHHHHHH---------HHCCC-EEEEEE-ecCccccccc--cCCceEEEeeCCCHHHHHHHHhCCCEE
Confidence 589999875333 343333 34465 655443 3221111100 011223333443 2467778899999
Q ss_pred EecCC
Q 042754 90 ISHAG 94 (178)
Q Consensus 90 IshaG 94 (178)
|+-++
T Consensus 69 i~~a~ 73 (328)
T TIGR03466 69 FHVAA 73 (328)
T ss_pred EEece
Confidence 98775
No 372
>PRK10565 putative carbohydrate kinase; Provisional
Probab=51.93 E-value=1.4e+02 Score=26.35 Aligned_cols=90 Identities=13% Similarity=0.159 Sum_probs=48.9
Q ss_pred CcEEEEEeCCcc---HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-hhHHHHhhhc
Q 042754 11 KRIVFVTVGTTC---FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS-SSIADHLRSA 86 (178)
Q Consensus 11 ~~~ilVt~Gs~~---~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~-~~~~~~~~~a 86 (178)
..+|+|.+||.+ +..| ... .+++ .+...+.+.+.......... ..+.+.+.++. ..+.+++..+
T Consensus 254 ~G~vliigGs~~~~GA~~L-aa~------aAlr-~GaGlv~~~~~~~~~~~~~~----~~Pe~~~~~~~~~~~~~~~~~~ 321 (508)
T PRK10565 254 HGRLLIIGGDHGTAGAIRM-AGE------AALR-SGAGLVRVLTRSENIAPLLT----ARPELMVHELTPDSLEESLEWA 321 (508)
T ss_pred CCeEEEEECCCCCccHHHH-HHH------HHHH-hCCCeEEEEeChhhHHHHhh----cCceeEEecCCHhHHHHHhhcC
Confidence 458999999874 3322 221 2332 34323544444332211111 12456666653 2377778899
Q ss_pred cEEEecCChHHH------HH-HHHcCCCEEEEe
Q 042754 87 SLVISHAGSGSI------FE-TLRHGKPLIVVV 112 (178)
Q Consensus 87 dlvIshaG~~Ti------~E-~l~~g~P~iviP 112 (178)
|.++--.|.++- .+ +...++|+|+=|
T Consensus 322 ~a~viGpGlg~~~~~~~~~~~~~~~~~P~VLDA 354 (508)
T PRK10565 322 DVVVIGPGLGQQEWGKKALQKVENFRKPMLWDA 354 (508)
T ss_pred CEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEc
Confidence 999888888752 12 223578887644
No 373
>PRK05866 short chain dehydrogenase; Provisional
Probab=51.59 E-value=39 Score=26.99 Aligned_cols=13 Identities=8% Similarity=0.233 Sum_probs=10.9
Q ss_pred cEEEEEeCCccHH
Q 042754 12 RIVFVTVGTTCFD 24 (178)
Q Consensus 12 ~~ilVt~Gs~~~~ 24 (178)
++++||+||.|.+
T Consensus 41 k~vlItGasggIG 53 (293)
T PRK05866 41 KRILLTGASSGIG 53 (293)
T ss_pred CEEEEeCCCcHHH
Confidence 7899999988665
No 374
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=51.49 E-value=73 Score=25.95 Aligned_cols=18 Identities=11% Similarity=0.244 Sum_probs=12.9
Q ss_pred hHHHHhhh--ccEEEecCCh
Q 042754 78 SIADHLRS--ASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG~ 95 (178)
++..++.. .|.||+-+|.
T Consensus 66 ~~~~~~~~~~~d~vih~A~~ 85 (349)
T TIGR02622 66 KLRKAIAEFKPEIVFHLAAQ 85 (349)
T ss_pred HHHHHHhhcCCCEEEECCcc
Confidence 35566665 4999999983
No 375
>PRK14982 acyl-ACP reductase; Provisional
Probab=51.34 E-value=38 Score=28.26 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=25.4
Q ss_pred hHHHHhhhccEEEecCChHHH--HHHHHcCCCEEEE
Q 042754 78 SIADHLRSASLVISHAGSGSI--FETLRHGKPLIVV 111 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti--~E~l~~g~P~ivi 111 (178)
++.+.++.+|+|||-+|.... .+.-....|.+++
T Consensus 208 ~l~~~l~~aDiVv~~ts~~~~~~I~~~~l~~~~~vi 243 (340)
T PRK14982 208 SLEEALPEADIVVWVASMPKGVEIDPETLKKPCLMI 243 (340)
T ss_pred hHHHHHccCCEEEECCcCCcCCcCCHHHhCCCeEEE
Confidence 477899999999998887333 3334557888886
No 376
>PLN02828 formyltetrahydrofolate deformylase
Probab=51.16 E-value=65 Score=25.96 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=42.0
Q ss_pred EEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcc---cccccccCCcceEEEEeCh------hhHHHHh
Q 042754 13 IVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYV---PTKSLGEDGLMAVDYFTFS------SSIADHL 83 (178)
Q Consensus 13 ~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~---~~~~~~~~~~~nv~v~~~~------~~~~~~~ 83 (178)
.||||+.+..+..|.....+ ...+. +++.+..+.... ............+.+++.. +.+.+++
T Consensus 74 avlvSg~g~nl~~ll~~~~~-------g~l~~-eI~~ViSn~~~~~~a~~~~~A~~~gIP~~~~~~~~~~~~e~~~~~~l 145 (268)
T PLN02828 74 AVLASKQDHCLIDLLHRWQD-------GRLPV-DITCVISNHERGPNTHVMRFLERHGIPYHYLPTTKENKREDEILELV 145 (268)
T ss_pred EEEEcCCChhHHHHHHhhhc-------CCCCc-eEEEEEeCCCCCCCchHHHHHHHcCCCEEEeCCCCCCCHHHHHHHHH
Confidence 45666655567777666521 23344 666666654310 1100000111223333321 2456677
Q ss_pred hhccEEEecCChHHHHHHHHc
Q 042754 84 RSASLVISHAGSGSIFETLRH 104 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~ 104 (178)
..+|++|. +|++.+.-.-.+
T Consensus 146 ~~~DliVL-Agym~IL~~~~l 165 (268)
T PLN02828 146 KGTDFLVL-ARYMQILSGNFL 165 (268)
T ss_pred hcCCEEEE-eeehHhCCHHHH
Confidence 78999999 688777654333
No 377
>PRK08263 short chain dehydrogenase; Provisional
Probab=51.13 E-value=58 Score=25.42 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.5
Q ss_pred cEEEEEeCCccHH
Q 042754 12 RIVFVTVGTTCFD 24 (178)
Q Consensus 12 ~~ilVt~Gs~~~~ 24 (178)
+.+|||+||.+.+
T Consensus 4 k~vlItGasg~iG 16 (275)
T PRK08263 4 KVWFITGASRGFG 16 (275)
T ss_pred CEEEEeCCCChHH
Confidence 5899999987655
No 378
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=51.12 E-value=79 Score=26.43 Aligned_cols=17 Identities=18% Similarity=0.544 Sum_probs=12.6
Q ss_pred hhccEEEecCChHHHHHH
Q 042754 84 RSASLVISHAGSGSIFET 101 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~ 101 (178)
..+|+||.=|| |+++.+
T Consensus 82 ~~~d~IIaiGG-GS~~D~ 98 (374)
T cd08189 82 NGCDAILAVGG-GSVIDC 98 (374)
T ss_pred cCCCEEEEeCC-ccHHHH
Confidence 46899999877 565554
No 379
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=50.96 E-value=80 Score=25.23 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=14.6
Q ss_pred hHHHHhhhccEEEecCC
Q 042754 78 SIADHLRSASLVISHAG 94 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG 94 (178)
++.+.++.||+|||-|.
T Consensus 59 ~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 59 SLEEALEGVDVVFHTAA 75 (280)
T ss_pred HHHHHhcCCceEEEeCc
Confidence 58889999999999865
No 380
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=50.88 E-value=82 Score=24.81 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=45.8
Q ss_pred EEEEeCCccHHH--HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh----hHHHHhhhcc
Q 042754 14 VFVTVGTTCFDA--LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS----SIADHLRSAS 87 (178)
Q Consensus 14 ilVt~Gs~~~~~--l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~----~~~~~~~~ad 87 (178)
|+|.+||.++.. ++... .++ +.+...+.+.+-......... ..+.+.+.++.. .+.+.+.++|
T Consensus 1 VlvigGS~~~~GA~~Laa~------aAl-r~GaGlV~~~~~~~~~~~~~~----~~Pe~m~~~~~~~~~~~~~~~~~~~~ 69 (242)
T PF01256_consen 1 VLVIGGSEGYPGAAILAAR------AAL-RSGAGLVTLATPESIAPVIAS----YSPEAMVSPLPSDEDVEILELLEKAD 69 (242)
T ss_dssp EEEEE-BTSSHHHHHHHHH------HHH-HTT-SEEEEEECGCCHHHHHH----HTTTSEEEETTHCCHHHHHHHHCH-S
T ss_pred CEEEECCCCCCCHHHHHHH------HHH-HHCCCcEEEEEcHHHHHHHHh----CCceeEEecccchhhhhhHhhhccCC
Confidence 688899875432 22221 233 334435666665544322221 124566777763 2456788999
Q ss_pred EEEecCChHH-------HHHHHHcCCCEEE
Q 042754 88 LVISHAGSGS-------IFETLRHGKPLIV 110 (178)
Q Consensus 88 lvIshaG~~T-------i~E~l~~g~P~iv 110 (178)
+++-=+|.|. +.+.+...+|.|+
T Consensus 70 av~iGPGlg~~~~~~~~~~~~~~~~~p~Vl 99 (242)
T PF01256_consen 70 AVVIGPGLGRDEETEELLEELLESDKPLVL 99 (242)
T ss_dssp EEEE-TT-SSSHHHHHHHHHHHHHCSTEEE
T ss_pred EEEeecCCCCchhhHHHHHHHHhhcceEEE
Confidence 9998888764 4446777888443
No 381
>PRK12744 short chain dehydrogenase; Provisional
Probab=49.94 E-value=89 Score=23.99 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=19.7
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
.+.+|||+|+.+.+. +.+ .|...++ ++++++.
T Consensus 8 ~k~vlItGa~~gIG~~~a~---------~l~~~G~-~vv~i~~ 40 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIAR---------DLAAQGA-KAVAIHY 40 (257)
T ss_pred CcEEEEECCCchHHHHHHH---------HHHHCCC-cEEEEec
Confidence 468999999876542 322 3345576 7665543
No 382
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=49.94 E-value=60 Score=25.31 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=36.1
Q ss_pred hhhccEEEe---cCChH-HHHHHHH-cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 83 LRSASLVIS---HAGSG-SIFETLR-HGKPLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 83 ~~~adlvIs---haG~~-Ti~E~l~-~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
++.||++|+ |+=.+ .+.+.+. .|.+.|++|......+-.....+.+++.|.-+
T Consensus 49 i~~~Dl~I~y~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~ 106 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEV 106 (217)
T ss_pred CCCCCEEEEeccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCcee
Confidence 789999999 65543 3444444 89999999975321133446677888888554
No 383
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.90 E-value=17 Score=25.27 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=24.4
Q ss_pred hccEEEecCChHHHHHHHHc----C-----CCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFETLRH----G-----KPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l~~----g-----~P~iviP~~~ 115 (178)
..|.||.-||=||+.|++.. . .|+.++|...
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 46799999999999998752 3 6788888753
No 384
>PLN02583 cinnamoyl-CoA reductase
Probab=49.69 E-value=1.3e+02 Score=23.90 Aligned_cols=73 Identities=21% Similarity=0.119 Sum_probs=35.5
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc---cccccCCcceEEEE--eChh--hHHHH
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT---KSLGEDGLMAVDYF--TFSS--SIADH 82 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~---~~~~~~~~~nv~v~--~~~~--~~~~~ 82 (178)
+++||||+||.+.+ .+.+. |.+.++ +|+...-+...... .........+++++ +..+ .+.+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~---------Ll~~G~-~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~ 75 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKR---------LLSRGY-TVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDA 75 (297)
T ss_pred CCEEEEECCCCHHHHHHHHH---------HHhCCC-EEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHH
Confidence 56899999986443 23333 334576 76554321111110 00000001234333 3322 36678
Q ss_pred hhhccEEEecC
Q 042754 83 LRSASLVISHA 93 (178)
Q Consensus 83 ~~~adlvIsha 93 (178)
+..||.|++.+
T Consensus 76 l~~~d~v~~~~ 86 (297)
T PLN02583 76 LKGCSGLFCCF 86 (297)
T ss_pred HcCCCEEEEeC
Confidence 88999998644
No 385
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.61 E-value=64 Score=24.43 Aligned_cols=75 Identities=16% Similarity=0.151 Sum_probs=37.3
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEEe--Ch--hhHHHHh
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYFT--FS--SSIADHL 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~~--~~--~~~~~~~ 83 (178)
.++++||+||.+.+. +.+ .|...++ ++++ ++.+...... ......+.++.++. .. .++..++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~---------~L~~~G~-~Vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 75 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAI---------ALAKEGV-NVGL-LARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAI 75 (239)
T ss_pred CCEEEEEcCCchHHHHHHH---------HHHHCCC-EEEE-EeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHH
Confidence 467999999875543 322 3345575 6555 4543211000 00000122344333 22 2344444
Q ss_pred h-------hccEEEecCChH
Q 042754 84 R-------SASLVISHAGSG 96 (178)
Q Consensus 84 ~-------~adlvIshaG~~ 96 (178)
. ..|++|+-+|..
T Consensus 76 ~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 76 EQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHHcCCccEEEEcCccc
Confidence 4 689999998853
No 386
>PRK11914 diacylglycerol kinase; Reviewed
Probab=49.46 E-value=21 Score=28.87 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.0
Q ss_pred hhccEEEecCChHHHHHHH----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l----~~g~P~iviP~~ 114 (178)
..+|+||.-||=||+.|++ ..++|+-++|..
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~G 97 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPAG 97 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeCC
Confidence 4469999999999999987 347899999975
No 387
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=49.38 E-value=64 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=19.6
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
..+++|||+|+.+.+. +.+ .|...++ ++++.
T Consensus 6 ~~k~~lItGa~~gIG~~ia~---------~l~~~G~-~vvi~ 37 (261)
T PRK08936 6 EGKVVVITGGSTGLGRAMAV---------RFGKEKA-KVVIN 37 (261)
T ss_pred CCCEEEEeCCCChHHHHHHH---------HHHHCCC-EEEEE
Confidence 4578999999886543 332 3345575 66654
No 388
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=49.24 E-value=1.2e+02 Score=23.11 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=35.5
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhh--
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRS-- 85 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~-- 85 (178)
.+.+|||+||.+.+. +.+ .|.+.++ ++++. +.+.. ... .........+.. +++..++..
T Consensus 8 ~k~vlItGas~~iG~~la~---------~l~~~G~-~v~~~-~~~~~-~~~----~~~~~~~~~D~~~~~~~~~~~~~~~ 71 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVAL---------AFVEAGA-KVIGF-DQAFL-TQE----DYPFATFVLDVSDAAAVAQVCQRLL 71 (252)
T ss_pred CCEEEEeCCCchHHHHHHH---------HHHHCCC-EEEEE-ecchh-hhc----CCceEEEEecCCCHHHHHHHHHHHH
Confidence 478999999876542 322 3344565 65554 33321 100 001112222332 124444443
Q ss_pred -----ccEEEecCChH
Q 042754 86 -----ASLVISHAGSG 96 (178)
Q Consensus 86 -----adlvIshaG~~ 96 (178)
.|++|+.+|..
T Consensus 72 ~~~~~id~vi~~ag~~ 87 (252)
T PRK08220 72 AETGPLDVLVNAAGIL 87 (252)
T ss_pred HHcCCCCEEEECCCcC
Confidence 69999999864
No 389
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=49.19 E-value=68 Score=25.52 Aligned_cols=75 Identities=9% Similarity=0.171 Sum_probs=40.5
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCc-cccc-ccccCCcceEEEEeC---------hhhH
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTY-VPTK-SLGEDGLMAVDYFTF---------SSSI 79 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~-~~~~-~~~~~~~~nv~v~~~---------~~~~ 79 (178)
.++++||+-|.|++.-. .+.|.+.++ +++ .+|+... .... .+..........++- ++.+
T Consensus 6 ~kv~lITGASSGiG~A~--------A~~l~~~G~-~vv-l~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~ 75 (246)
T COG4221 6 GKVALITGASSGIGEAT--------ARALAEAGA-KVV-LAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEAL 75 (246)
T ss_pred CcEEEEecCcchHHHHH--------HHHHHHCCC-eEE-EEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHH
Confidence 47899999999886432 234456675 554 4565432 1111 111000012222222 2335
Q ss_pred HHHhhhccEEEecCCh
Q 042754 80 ADHLRSASLVISHAGS 95 (178)
Q Consensus 80 ~~~~~~adlvIshaG~ 95 (178)
.+-+..-|++|..||.
T Consensus 76 ~~~~g~iDiLvNNAGl 91 (246)
T COG4221 76 PEEFGRIDILVNNAGL 91 (246)
T ss_pred HHhhCcccEEEecCCC
Confidence 5566789999999995
No 390
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.07 E-value=43 Score=27.20 Aligned_cols=77 Identities=17% Similarity=0.273 Sum_probs=44.4
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-cc-ccCCcc-eEEEEeC-----------h
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-SL-GEDGLM-AVDYFTF-----------S 76 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-~~-~~~~~~-nv~v~~~-----------~ 76 (178)
.++|+|||-|.|.+.-.. ..+...+. +++++.+........ .. .+..+. ++.+.+. +
T Consensus 12 ~kvVvITGASsGIG~~lA--------~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~ 82 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALA--------YELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFV 82 (282)
T ss_pred CCEEEEeCCCcHHHHHHH--------HHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHH
Confidence 578888888888764321 23345676 888888875432211 00 001112 2444432 2
Q ss_pred hhHHHHhhhccEEEecCChH
Q 042754 77 SSIADHLRSASLVISHAGSG 96 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~~ 96 (178)
++....+...|+.|..||.+
T Consensus 83 ~~~~~~fg~vDvLVNNAG~~ 102 (282)
T KOG1205|consen 83 EWAIRHFGRVDVLVNNAGIS 102 (282)
T ss_pred HHHHHhcCCCCEEEecCccc
Confidence 22335678899999999975
No 391
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=48.92 E-value=44 Score=26.58 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=8.1
Q ss_pred hccEEEecCC
Q 042754 85 SASLVISHAG 94 (178)
Q Consensus 85 ~adlvIshaG 94 (178)
.+|+|||-||
T Consensus 68 ~~d~Vih~A~ 77 (308)
T PRK11150 68 DIEAIFHEGA 77 (308)
T ss_pred CccEEEECce
Confidence 5899998775
No 392
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=48.63 E-value=22 Score=31.59 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=53.8
Q ss_pred hhHHHHhhhccEEEecCCh---HHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHh-----------------CC--CE
Q 042754 77 SSIADHLRSASLVISHAGS---GSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAA-----------------RK--HL 134 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~---~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~-----------------~G--~~ 134 (178)
.++..+|..+.++|.-|.. -+=.||++.|.|.|- |... ..|-..|.+++.+ .| ..
T Consensus 333 ~ef~~lL~~akvfiGlGfP~EgPaPlEAia~G~vFlN-p~~~--pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhV 409 (559)
T PF15024_consen 333 DEFQQLLRKAKVFIGLGFPYEGPAPLEAIANGCVFLN-PRFN--PPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHV 409 (559)
T ss_pred HHHHHHHHhhhEeeecCCCCCCCChHHHHHcCCcccc-ccCC--CCCcccccccccCCCCcceeccCChHHHhhCCCCeE
Confidence 3588999999999998643 378999999999884 5531 1122233332221 22 22
Q ss_pred EE---eChhhHHHHHHccCcccCCCCCCC
Q 042754 135 YC---AHPQSLHQVIAGMDLESLLPYQPG 160 (178)
Q Consensus 135 ~~---~~~~~L~~~i~~l~~~~~~~~~~~ 160 (178)
+. -+.+++.++|+++++...++|.+.
T Consensus 410 ytVd~~n~~~v~~Avk~il~~~v~Py~P~ 438 (559)
T PF15024_consen 410 YTVDINNSTEVEAAVKAILATPVEPYLPY 438 (559)
T ss_pred EEEcCCCHHHHHHHHHHHHhcCCCCcCCc
Confidence 22 277899999999987777777654
No 393
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=48.46 E-value=79 Score=26.99 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=17.3
Q ss_pred hhhHHHHhhhccEEEecCChH
Q 042754 76 SSSIADHLRSASLVISHAGSG 96 (178)
Q Consensus 76 ~~~~~~~~~~adlvIshaG~~ 96 (178)
..++.++++.||+|+.|.-.+
T Consensus 194 ~~~l~ell~~sDiVslh~Plt 214 (409)
T PRK11790 194 VGSLEELLAQSDVVSLHVPET 214 (409)
T ss_pred cCCHHHHHhhCCEEEEcCCCC
Confidence 446899999999999997643
No 394
>PRK12828 short chain dehydrogenase; Provisional
Probab=48.42 E-value=94 Score=23.20 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=10.8
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++||++||.+.+
T Consensus 7 ~k~vlItGatg~iG 20 (239)
T PRK12828 7 GKVVAITGGFGGLG 20 (239)
T ss_pred CCEEEEECCCCcHh
Confidence 57899999986554
No 395
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=48.20 E-value=1.2e+02 Score=23.29 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=15.7
Q ss_pred HHhhhccEEEec-CChHHHHHHH
Q 042754 81 DHLRSASLVISH-AGSGSIFETL 102 (178)
Q Consensus 81 ~~~~~adlvIsh-aG~~Ti~E~l 102 (178)
.+...||++|.- ||.||..|++
T Consensus 106 ~~~~~ada~V~~pGG~GTleEl~ 128 (205)
T COG1611 106 AMVRSADAFIVLPGGFGTLEELF 128 (205)
T ss_pred HHHHhCCEEEEeCCCcchHHHHH
Confidence 566899988765 5678886654
No 396
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=48.19 E-value=64 Score=24.69 Aligned_cols=11 Identities=18% Similarity=0.495 Sum_probs=9.5
Q ss_pred hccEEEecCCh
Q 042754 85 SASLVISHAGS 95 (178)
Q Consensus 85 ~adlvIshaG~ 95 (178)
..|.+|+-+|.
T Consensus 74 ~id~vi~~ag~ 84 (248)
T PRK10538 74 NIDVLVNNAGL 84 (248)
T ss_pred CCCEEEECCCc
Confidence 68999999885
No 397
>PRK12937 short chain dehydrogenase; Provisional
Probab=48.18 E-value=73 Score=24.07 Aligned_cols=32 Identities=16% Similarity=0.406 Sum_probs=19.8
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
.+.++||+|+.+.+. +.+ .|.+.++ ++++...
T Consensus 5 ~~~vlItG~~~~iG~~la~---------~l~~~g~-~v~~~~~ 37 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIAR---------RLAADGF-AVAVNYA 37 (245)
T ss_pred CCEEEEeCCCchHHHHHHH---------HHHHCCC-EEEEecC
Confidence 478999999876543 332 3345575 7665543
No 398
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.14 E-value=7.5 Score=35.24 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=34.3
Q ss_pred hhccEEEe---cCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 84 RSASLVIS---HAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 84 ~~adlvIs---haG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
.-+|++.- -.|.+|.+|.|+.|+|+|.+|-..+. -..-+..+...|++-
T Consensus 834 ~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lA---srVa~Sll~~~Gl~h 885 (966)
T KOG4626|consen 834 QLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLA---SRVAASLLTALGLGH 885 (966)
T ss_pred hhhhhcccCcCcCCcccchhhhccCCceeecccHHHH---HHHHHHHHHHcccHH
Confidence 55666643 25889999999999999999975321 123445667778773
No 399
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.84 E-value=47 Score=26.30 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=22.4
Q ss_pred CCCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 8 VSLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 8 ~~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
....|.||||++|+|. +-.++ ..++.+.++ +|+...-
T Consensus 4 ~~~~k~VlItgcs~GG--IG~al-----a~ef~~~G~-~V~AtaR 40 (289)
T KOG1209|consen 4 QSQPKKVLITGCSSGG--IGYAL-----AKEFARNGY-LVYATAR 40 (289)
T ss_pred ccCCCeEEEeecCCcc--hhHHH-----HHHHHhCCe-EEEEEcc
Confidence 3457899999998853 22222 234566777 6655433
No 400
>PRK13059 putative lipid kinase; Reviewed
Probab=47.76 E-value=20 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=25.4
Q ss_pred hhccEEEecCChHHHHHHH------HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL------RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l------~~g~P~iviP~~ 114 (178)
..+|+||.-||=||+.|++ ..++|+-++|..
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~G 91 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPVG 91 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECCC
Confidence 4579999999999999885 235889999975
No 401
>PRK13057 putative lipid kinase; Reviewed
Probab=47.68 E-value=30 Score=27.67 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=26.3
Q ss_pred hhhccEEEecCChHHHHHHHH----cCCCEEEEeCC
Q 042754 83 LRSASLVISHAGSGSIFETLR----HGKPLIVVVNE 114 (178)
Q Consensus 83 ~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~ 114 (178)
....|+||.-||=||+.|++. .+.|+-++|..
T Consensus 48 ~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~G 83 (287)
T PRK13057 48 ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLG 83 (287)
T ss_pred HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCC
Confidence 356799999999999999863 46899999975
No 402
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=47.62 E-value=1.1e+02 Score=24.10 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=23.0
Q ss_pred HHHHhhhc-cEEEecCChHH----------------------HHHHHHc-CCCEEEEeCC
Q 042754 79 IADHLRSA-SLVISHAGSGS----------------------IFETLRH-GKPLIVVVNE 114 (178)
Q Consensus 79 ~~~~~~~a-dlvIshaG~~T----------------------i~E~l~~-g~P~iviP~~ 114 (178)
....+..+ |.|||-++... +.|++.. |++-++++..
T Consensus 57 ~~~~~~~~~d~vih~aa~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss 116 (314)
T COG0451 57 VDELAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASS 116 (314)
T ss_pred HHHHHhcCCCEEEEccccCchhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCC
Confidence 45556666 88888777553 2444454 8888877544
No 403
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=47.61 E-value=75 Score=23.97 Aligned_cols=14 Identities=21% Similarity=0.150 Sum_probs=10.9
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++|||+||.+.+
T Consensus 6 ~~~vlItGa~g~iG 19 (245)
T PRK12936 6 GRKALVTGASGGIG 19 (245)
T ss_pred CCEEEEECCCChHH
Confidence 46899999987554
No 404
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=47.34 E-value=1e+02 Score=22.46 Aligned_cols=75 Identities=12% Similarity=0.249 Sum_probs=43.2
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh-----HHHHhhhc----cEEEecCChH------HHHH
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS-----IADHLRSA----SLVISHAGSG------SIFE 100 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~-----~~~~~~~a----dlvIshaG~~------Ti~E 100 (178)
.+.|.+.++.+++-+.|.....-...... ..+++++....+ |.+-+.++ -++++++|.| .+.+
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~~l~~al~~--~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~ 84 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSINGLMDALRR--EGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYD 84 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchHHHHHHHhh--cCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHH
Confidence 45667778766777777754211111100 123444443322 44344333 3677777765 5788
Q ss_pred HHHcCCCEEEEe
Q 042754 101 TLRHGKPLIVVV 112 (178)
Q Consensus 101 ~l~~g~P~iviP 112 (178)
+..-++|+|+|.
T Consensus 85 A~~~~~Pvl~I~ 96 (164)
T cd07039 85 AKRDRAPVLAIA 96 (164)
T ss_pred HHhcCCCEEEEe
Confidence 999999999995
No 405
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=47.23 E-value=47 Score=23.49 Aligned_cols=74 Identities=18% Similarity=0.294 Sum_probs=39.8
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC--Cc-cccc-ccccCCcceEEEEeC--h--------
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG--TY-VPTK-SLGEDGLMAVDYFTF--S-------- 76 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~--~~-~~~~-~~~~~~~~nv~v~~~--~-------- 76 (178)
++++||+||.|.+. +.+.+ ...+. ..++.++.+ .. .... ........++.++.. .
T Consensus 1 k~~lItGa~~giG~~~a~~l---------~~~g~-~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~ 70 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARAL---------ARRGA-RVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRAL 70 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHH---------HHTTT-EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHH---------HhcCc-eEEEEeeeccccccccccccccccccccccccccccccccccccc
Confidence 57999999987653 33333 34454 677788877 11 0100 000111245555542 1
Q ss_pred -hhHHHHhhhccEEEecCCh
Q 042754 77 -SSIADHLRSASLVISHAGS 95 (178)
Q Consensus 77 -~~~~~~~~~adlvIshaG~ 95 (178)
+.+.......|++|+.+|.
T Consensus 71 ~~~~~~~~~~ld~li~~ag~ 90 (167)
T PF00106_consen 71 IEEVIKRFGPLDILINNAGI 90 (167)
T ss_dssp HHHHHHHHSSESEEEEECSC
T ss_pred cccccccccccccccccccc
Confidence 1222334578899999986
No 406
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.96 E-value=69 Score=24.26 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=18.8
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
.+++||++|+.+.+... ...+...+. ++++..
T Consensus 5 ~~~~lItG~~g~iG~~~--------a~~l~~~G~-~vi~~~ 36 (253)
T PRK08217 5 DKVIVITGGAQGLGRAM--------AEYLAQKGA-KLALID 36 (253)
T ss_pred CCEEEEECCCchHHHHH--------HHHHHHCCC-EEEEEe
Confidence 46899999977654321 122344575 765544
No 407
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.62 E-value=58 Score=24.55 Aligned_cols=32 Identities=9% Similarity=0.008 Sum_probs=19.8
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
.++|||++||.+.+. +.+ .+...++ +|+..+-
T Consensus 5 ~~~vlItGa~g~iG~~~a~---------~l~~~G~-~V~~~~r 37 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAY---------FALKEGA-QVCINSR 37 (238)
T ss_pred CcEEEEECCCchHHHHHHH---------HHHHCCC-EEEEEeC
Confidence 468999999865542 322 3345676 7766544
No 408
>PRK06057 short chain dehydrogenase; Provisional
Probab=46.49 E-value=73 Score=24.47 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.9
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.++++||+||.+.+
T Consensus 7 ~~~vlItGasggIG 20 (255)
T PRK06057 7 GRVAVITGGGSGIG 20 (255)
T ss_pred CCEEEEECCCchHH
Confidence 47899999987554
No 409
>PRK12742 oxidoreductase; Provisional
Probab=46.48 E-value=75 Score=23.91 Aligned_cols=75 Identities=15% Similarity=0.237 Sum_probs=35.7
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh---
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR--- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~--- 84 (178)
.+++|||+|+.+.+. +.+ .|...+. ++++....... ................+..+ .+.+.+.
T Consensus 6 ~k~vlItGasggIG~~~a~---------~l~~~G~-~v~~~~~~~~~-~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~ 74 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVR---------RFVTDGA-NVRFTYAGSKD-AAERLAQETGATAVQTDSADRDAVIDVVRKSG 74 (237)
T ss_pred CCEEEEECCCChHHHHHHH---------HHHHCCC-EEEEecCCCHH-HHHHHHHHhCCeEEecCCCCHHHHHHHHHHhC
Confidence 468999999876653 332 3345565 76654332211 11100000011122223221 2333333
Q ss_pred hccEEEecCChH
Q 042754 85 SASLVISHAGSG 96 (178)
Q Consensus 85 ~adlvIshaG~~ 96 (178)
..|++|+-+|..
T Consensus 75 ~id~li~~ag~~ 86 (237)
T PRK12742 75 ALDILVVNAGIA 86 (237)
T ss_pred CCcEEEECCCCC
Confidence 369999999863
No 410
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=46.44 E-value=1e+02 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=18.7
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
.++++||+|+.|.+. .+ .+.|.+.++ +++..
T Consensus 10 ~k~~lItG~~~gIG~---a~-----a~~l~~~G~-~vv~~ 40 (253)
T PRK08993 10 GKVAVVTGCDTGLGQ---GM-----ALGLAEAGC-DIVGI 40 (253)
T ss_pred CCEEEEECCCchHHH---HH-----HHHHHHCCC-EEEEe
Confidence 478999999875442 22 223445675 76643
No 411
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=46.39 E-value=47 Score=27.30 Aligned_cols=84 Identities=13% Similarity=0.182 Sum_probs=47.8
Q ss_pred CcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccc-cccccCCcceEEEEeChhhHHHHhh--hcc
Q 042754 11 KRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPT-KSLGEDGLMAVDYFTFSSSIADHLR--SAS 87 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~-~~~~~~~~~nv~v~~~~~~~~~~~~--~ad 87 (178)
...|||++||.|-+.+.-.+ .+..+. .++++++....... ...+.+.-.+.+-.+|.+...++.. ..|
T Consensus 143 g~~VLV~gaaGgVG~~aiQl--------Ak~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvD 213 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQL--------AKALGA-TVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVD 213 (326)
T ss_pred CCEEEEecCCchHHHHHHHH--------HHHcCC-cEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCce
Confidence 67899999988766543222 134565 77777776543221 1111110111111224555555554 489
Q ss_pred EEEecCChHHHHHHHH
Q 042754 88 LVISHAGSGSIFETLR 103 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~ 103 (178)
+|+-.-|..+..+++.
T Consensus 214 vv~D~vG~~~~~~~l~ 229 (326)
T COG0604 214 VVLDTVGGDTFAASLA 229 (326)
T ss_pred EEEECCCHHHHHHHHH
Confidence 9999999888887554
No 412
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=46.10 E-value=1.1e+02 Score=22.17 Aligned_cols=75 Identities=16% Similarity=0.209 Sum_probs=40.4
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh-----HHHHhhh---ccEEEecCChH------HHHHH
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS-----IADHLRS---ASLVISHAGSG------SIFET 101 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~-----~~~~~~~---adlvIshaG~~------Ti~E~ 101 (178)
.+.|.+.++.+++-..|.....-...... ..++++.....+ |.+-+.. --++++++|.| .+.|+
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~~l~~al~~--~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~A 81 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNLPLLDAIEE--NPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAGA 81 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHHHHHHHHhh--cCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHHH
Confidence 45667778756777777754211111100 113444433322 3332322 23556665654 46788
Q ss_pred HHcCCCEEEEe
Q 042754 102 LRHGKPLIVVV 112 (178)
Q Consensus 102 l~~g~P~iviP 112 (178)
..-++|+|++.
T Consensus 82 ~~~~~Pvl~i~ 92 (162)
T cd07038 82 YAEHVPVVHIV 92 (162)
T ss_pred HHcCCCEEEEe
Confidence 89999999995
No 413
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=45.99 E-value=25 Score=29.02 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=23.5
Q ss_pred hhccEEEecCChHHHHHHH-----HcCCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHGKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~ 114 (178)
..+|+||.=|| ||++++. ..++|.|.||..
T Consensus 76 ~~~d~IIaiGG-Gs~iD~aK~ia~~~~~p~i~IPTt 110 (337)
T cd08177 76 AGADGIVAIGG-GSTIDLAKAIALRTGLPIIAIPTT 110 (337)
T ss_pred cCCCEEEEeCC-cHHHHHHHHHHHHhcCCEEEEcCC
Confidence 47899999877 6776653 248999999976
No 414
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=45.96 E-value=1e+02 Score=21.45 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=9.3
Q ss_pred cEEEEEeCCccHH
Q 042754 12 RIVFVTVGTTCFD 24 (178)
Q Consensus 12 ~~ilVt~Gs~~~~ 24 (178)
+.++|++|+.+..
T Consensus 1 ~~~li~Ga~~~iG 13 (180)
T smart00822 1 GTYLITGGLGGLG 13 (180)
T ss_pred CEEEEEcCCChHH
Confidence 4688998876543
No 415
>PRK05650 short chain dehydrogenase; Provisional
Probab=45.51 E-value=74 Score=24.72 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=35.5
Q ss_pred EEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEE--eChh--hHHHHhh-
Q 042754 13 IVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYF--TFSS--SIADHLR- 84 (178)
Q Consensus 13 ~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~--~~~~--~~~~~~~- 84 (178)
+++||+||.+.+ .+.+. |...+. ++++. +........ ........++.++ +..+ ++.+++.
T Consensus 2 ~vlVtGasggIG~~la~~---------l~~~g~-~V~~~-~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~ 70 (270)
T PRK05650 2 RVMITGAASGLGRAIALR---------WAREGW-RLALA-DVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQA 70 (270)
T ss_pred EEEEecCCChHHHHHHHH---------HHHCCC-EEEEE-eCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHH
Confidence 689999987654 23333 344575 66554 443211000 0000011233322 3332 2445444
Q ss_pred ------hccEEEecCChH
Q 042754 85 ------SASLVISHAGSG 96 (178)
Q Consensus 85 ------~adlvIshaG~~ 96 (178)
..|.+|+-+|..
T Consensus 71 i~~~~~~id~lI~~ag~~ 88 (270)
T PRK05650 71 CEEKWGGIDVIVNNAGVA 88 (270)
T ss_pred HHHHcCCCCEEEECCCCC
Confidence 479999999853
No 416
>PRK10736 hypothetical protein; Provisional
Probab=45.41 E-value=1.1e+02 Score=25.99 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=48.6
Q ss_pred HHHHhhhccEEEe---cCC-hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEEeChhhHHHHHH
Q 042754 79 IADHLRSASLVIS---HAG-SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYCAHPQSLHQVIA 147 (178)
Q Consensus 79 ~~~~~~~adlvIs---haG-~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~~~~~~L~~~i~ 147 (178)
+-.-|..+=+||- ++| ..|.-.++..|+++.++|-. ..+.+..-...|-+.|+....+++++.+.+.
T Consensus 214 IIagLS~~viVvEA~~kSGsliTA~~Al~~gR~VfavPG~--i~~~~s~G~n~LI~~GA~lv~~~~Di~~~l~ 284 (374)
T PRK10736 214 IISGLSKGVLVVEAALRSGSLVTARCALEQGRDVFALPGP--IGNPGSEGPHWLIKQGAYLVTSPEDILENLQ 284 (374)
T ss_pred HHHHhCCeEEEEEeCCCCchHHHHHHHHHhCCeEEEEcCC--CCCccchhHHHHHHCCCEEeCCHHHHHHHhh
Confidence 4445566667776 667 44777899999999999854 3344555666777889777778888888774
No 417
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.93 E-value=59 Score=26.21 Aligned_cols=35 Identities=14% Similarity=0.163 Sum_probs=21.5
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..++++||+||.|.+.- + ...|...++ +|++. +.+
T Consensus 13 ~gk~~lITGas~GIG~~---~-----a~~La~~G~-~Vil~-~R~ 47 (313)
T PRK05854 13 SGKRAVVTGASDGLGLG---L-----ARRLAAAGA-EVILP-VRN 47 (313)
T ss_pred CCCEEEEeCCCChHHHH---H-----HHHHHHCCC-EEEEE-eCC
Confidence 35789999998876532 1 223445676 77664 444
No 418
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.86 E-value=32 Score=27.51 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.2
Q ss_pred hhccEEEecCChHHHHHHHH----cCCCEEEEeC
Q 042754 84 RSASLVISHAGSGSIFETLR----HGKPLIVVVN 113 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~----~g~P~iviP~ 113 (178)
..+|++|+=||=||+..++. .++|.+-|-.
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 55899999999999998875 5789888764
No 419
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=44.76 E-value=1.6e+02 Score=23.32 Aligned_cols=92 Identities=16% Similarity=0.194 Sum_probs=49.9
Q ss_pred CCcEEEEEeCCccHH--HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeC---hhhHHHHhh
Q 042754 10 LKRIVFVTVGTTCFD--ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTF---SSSIADHLR 84 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~--~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~---~~~~~~~~~ 84 (178)
+..+||+.+||.++. .+...+ ..+. .+. .+|-..+..+...... ...+.+...++ ...+..++.
T Consensus 23 ~~G~vliiaGs~~~~GA~ila~l------~~~~-~g~-~~v~~~~~~~~~~~i~---~~~pe~~~~~~~~~~~~~~~~~~ 91 (272)
T TIGR00196 23 QYGRVLIIGGSDDYSGAPLLAAL------AALR-AGA-GLVTVAAPENVITLIN---SVSPELIVHRLGWKVDEDEELLE 91 (272)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHH------HHHH-hCC-CeEEEEEchhhHHHHh---hcCCEEEEecchhhHHHHHhhhc
Confidence 356899999987432 232222 2222 244 4444444432111111 12345655554 334566778
Q ss_pred hccEEEecCChHH-------HHHHHHcCCCEEEEe
Q 042754 85 SASLVISHAGSGS-------IFETLRHGKPLIVVV 112 (178)
Q Consensus 85 ~adlvIshaG~~T-------i~E~l~~g~P~iviP 112 (178)
.+|.++.-+|.++ +..+...++|+|+=|
T Consensus 92 ~~davvig~Gl~~~~~~~~l~~~~~~~~~pvVlDa 126 (272)
T TIGR00196 92 RYDVVVIGPGLGQDPSFKKAVEEVLELDKPVVLDA 126 (272)
T ss_pred cCCEEEEcCCCCCCHHHHHHHHHHHhcCCCEEEEh
Confidence 8999988776654 334555789977655
No 420
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=44.53 E-value=96 Score=23.92 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=24.4
Q ss_pred hhHHHHhhhccEEEecCChHHH----HH-HHHcCCCEEEEe
Q 042754 77 SSIADHLRSASLVISHAGSGSI----FE-TLRHGKPLIVVV 112 (178)
Q Consensus 77 ~~~~~~~~~adlvIshaG~~Ti----~E-~l~~g~P~iviP 112 (178)
++..+++..+|+||.-...-.. .+ +...++|.|..-
T Consensus 103 ~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 103 ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 3466788999999986553332 22 356889998753
No 421
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=44.47 E-value=86 Score=23.64 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=19.7
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
++++||+|+.+.+ .+.+. |...++ ++++.+..+
T Consensus 2 ~~~lItGa~g~iG~~l~~~---------l~~~g~-~v~~~~~~~ 35 (247)
T PRK09730 2 AIALVTGGSRGIGRATALL---------LAQEGY-TVAVNYQQN 35 (247)
T ss_pred CEEEEeCCCchHHHHHHHH---------HHHCCC-EEEEEeCCC
Confidence 4789999986544 23333 334575 776655443
No 422
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=44.03 E-value=1.6e+02 Score=23.38 Aligned_cols=91 Identities=14% Similarity=0.212 Sum_probs=49.3
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh-hhHHHHhhh--ccE
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS-SSIADHLRS--ASL 88 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~-~~~~~~~~~--adl 88 (178)
++|||.+||.-...+.+.+ ...++ +++..+=.......... .....+..-.+- .+|.++++. .|+
T Consensus 1 m~ILvlGGT~egr~la~~L---------~~~g~-~v~~s~~t~~~~~~~~~--~g~~~v~~g~l~~~~l~~~l~~~~i~~ 68 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGL---------IAQGI-EILVTVTTSEGKHLYPI--HQALTVHTGALDPQELREFLKRHSIDI 68 (256)
T ss_pred CeEEEEechHHHHHHHHHH---------HhCCC-eEEEEEccCCccccccc--cCCceEEECCCCHHHHHHHHHhcCCCE
Confidence 3699999976444454444 34464 66554433221111110 011234433332 347778865 788
Q ss_pred EEe--cCChHHHHH-----HHHcCCCEEEEeCC
Q 042754 89 VIS--HAGSGSIFE-----TLRHGKPLIVVVNE 114 (178)
Q Consensus 89 vIs--haG~~Ti~E-----~l~~g~P~iviP~~ 114 (178)
||. |+-+..+++ |..+|+|.+-+-++
T Consensus 69 VIDAtHPfA~~is~~a~~a~~~~~ipylR~eR~ 101 (256)
T TIGR00715 69 LVDATHPFAAQITTNATAVCKELGIPYVRFERP 101 (256)
T ss_pred EEEcCCHHHHHHHHHHHHHHHHhCCcEEEEECC
Confidence 874 555544443 45689999998554
No 423
>PRK06484 short chain dehydrogenase; Validated
Probab=43.99 E-value=80 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=20.9
Q ss_pred CCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..+++|||+||.|.+ .+.+ .|.+.++ +|++ ++.+
T Consensus 4 ~~k~~lITGas~gIG~aia~---------~l~~~G~-~V~~-~~r~ 38 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQ---------RFARAGD-QVVV-ADRN 38 (520)
T ss_pred CCeEEEEECCCcHHHHHHHH---------HHHHCCC-EEEE-EeCC
Confidence 357899999988654 2322 3345675 6655 4443
No 424
>PRK07102 short chain dehydrogenase; Provisional
Probab=43.92 E-value=72 Score=24.23 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=35.6
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc-cc--ccCCcceEEEEeC--h--hhHHHHh
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK-SL--GEDGLMAVDYFTF--S--SSIADHL 83 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~-~~--~~~~~~nv~v~~~--~--~~~~~~~ 83 (178)
++++||+||.+.+ .+.+. |.+.++ +|++ ++.+...... .. ......++.++.. . .++..++
T Consensus 2 ~~vlItGas~giG~~~a~~---------l~~~G~-~Vi~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 70 (243)
T PRK07102 2 KKILIIGATSDIARACARR---------YAAAGA-RLYL-AARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFL 70 (243)
T ss_pred cEEEEEcCCcHHHHHHHHH---------HHhcCC-EEEE-EeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHH
Confidence 4789999987554 23333 334565 6544 4544321100 00 0001234544432 1 2344555
Q ss_pred hh----ccEEEecCCh
Q 042754 84 RS----ASLVISHAGS 95 (178)
Q Consensus 84 ~~----adlvIshaG~ 95 (178)
.. .|++|+-+|.
T Consensus 71 ~~~~~~~d~vv~~ag~ 86 (243)
T PRK07102 71 DSLPALPDIVLIAVGT 86 (243)
T ss_pred HHHhhcCCEEEECCcC
Confidence 43 4999998875
No 425
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=43.62 E-value=1.8e+02 Score=23.85 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=20.6
Q ss_pred ccEEEecCChHHHHHH-------HHcCCCEEEEeCC
Q 042754 86 ASLVISHAGSGSIFET-------LRHGKPLIVVVNE 114 (178)
Q Consensus 86 adlvIshaG~~Ti~E~-------l~~g~P~iviP~~ 114 (178)
+|+||.=|| |+++.+ ...|+|.|.||..
T Consensus 82 ~d~IIavGG-Gsv~D~aK~iA~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 82 SSTIIALGG-GVVGDLAGFVAATYMRGIRFIQVPTT 116 (344)
T ss_pred CCEEEEEcC-hHHHHHHHHHHHHHccCCCEEEecCc
Confidence 489999888 555543 2348999999984
No 426
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=43.51 E-value=1.5e+02 Score=22.79 Aligned_cols=74 Identities=14% Similarity=0.151 Sum_probs=36.1
Q ss_pred CCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEE--EeChh---hHHHH
Q 042754 9 SLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDY--FTFSS---SIADH 82 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v--~~~~~---~~~~~ 82 (178)
.+.+.|||+++|.+.+ .+.+.+ ...++ +|+..+-.......... ...++.+ .+..+ .+...
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L---------~~~g~-~V~~~~R~~~~~~~~~~---~~~~~~~~~~Dl~d~~~~l~~~ 81 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQL---------LAKGF-AVKAGVRDVDKAKTSLP---QDPSLQIVRADVTEGSDKLVEA 81 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHH---------HhCCC-EEEEEecCHHHHHHhcc---cCCceEEEEeeCCCCHHHHHHH
Confidence 3457899999876433 333333 33465 66554322111110000 0112332 34332 24455
Q ss_pred h-hhccEEEecCCh
Q 042754 83 L-RSASLVISHAGS 95 (178)
Q Consensus 83 ~-~~adlvIshaG~ 95 (178)
+ ..+|+||+-+|.
T Consensus 82 ~~~~~d~vi~~~g~ 95 (251)
T PLN00141 82 IGDDSDAVICATGF 95 (251)
T ss_pred hhcCCCEEEECCCC
Confidence 5 579999988774
No 427
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=43.39 E-value=1.2e+02 Score=24.02 Aligned_cols=83 Identities=22% Similarity=0.257 Sum_probs=45.8
Q ss_pred CCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEEecCC----hHHHHHHHHcCCCEEEEeCCCCC
Q 042754 42 RGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAG----SGSIFETLRHGKPLIVVVNEDLM 117 (178)
Q Consensus 42 ~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvIshaG----~~Ti~E~l~~g~P~iviP~~~~~ 117 (178)
.++ +++..+.......... ....+ ...+++.+++..+|+||-=+- .--+..++.+|+|+++-|...
T Consensus 25 ~~~-elvav~d~~~~~~~~~----~~~~i---~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvigttG~-- 94 (257)
T PRK00048 25 EDL-ELVAAVDRPGSPLVGQ----GALGV---AITDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVIGTTGF-- 94 (257)
T ss_pred CCC-EEEEEEecCCcccccc----CCCCc---cccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEECCCC--
Confidence 355 7887777553211110 01122 123467888888999993333 344556889999999876432
Q ss_pred CchHHHHHHHHHhCCCEE
Q 042754 118 DNHQSELAEELAARKHLY 135 (178)
Q Consensus 118 ~~~Q~~nA~~l~~~G~~~ 135 (178)
..+|...-...+ .+..+
T Consensus 95 s~~~~~~l~~aa-~~~~v 111 (257)
T PRK00048 95 TEEQLAELEEAA-KKIPV 111 (257)
T ss_pred CHHHHHHHHHHh-cCCCE
Confidence 234444334433 44443
No 428
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=43.36 E-value=1.1e+02 Score=24.86 Aligned_cols=18 Identities=22% Similarity=0.337 Sum_probs=14.4
Q ss_pred hHHHHhhhccEEEecCCh
Q 042754 78 SIADHLRSASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~ 95 (178)
++...+..+|+||+-+|.
T Consensus 67 ~l~~~~~~iD~Vih~Ag~ 84 (324)
T TIGR03589 67 RLTRALRGVDYVVHAAAL 84 (324)
T ss_pred HHHHHHhcCCEEEECccc
Confidence 366778889999998874
No 429
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=43.24 E-value=1.1e+02 Score=23.17 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=10.6
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++|||+||.+.+
T Consensus 6 ~~~ilItGasg~iG 19 (251)
T PRK12826 6 GRVALVTGAARGIG 19 (251)
T ss_pred CCEEEEcCCCCcHH
Confidence 46899999987554
No 430
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=43.17 E-value=1.2e+02 Score=23.00 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=21.6
Q ss_pred HHHhhhccEEEecCChHHHHHHH----HcCCCEEEE
Q 042754 80 ADHLRSASLVISHAGSGSIFETL----RHGKPLIVV 111 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l----~~g~P~ivi 111 (178)
...+..+|+||+--+.-.+-+.+ ..+++.-++
T Consensus 65 ~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~ 100 (202)
T PRK06718 65 PSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVI 100 (202)
T ss_pred hhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEEC
Confidence 46679999999987766555544 356665544
No 431
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=43.13 E-value=89 Score=26.22 Aligned_cols=36 Identities=11% Similarity=0.262 Sum_probs=29.8
Q ss_pred HHHHhhh--ccEEEecCChHHHHHHHHc---CCCEEEEeCC
Q 042754 79 IADHLRS--ASLVISHAGSGSIFETLRH---GKPLIVVVNE 114 (178)
Q Consensus 79 ~~~~~~~--adlvIshaG~~Ti~E~l~~---g~P~iviP~~ 114 (178)
....|-. +|+++.-||=||.-..+.. .+|.+.+|..
T Consensus 92 ~~r~~~~~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaG 132 (355)
T COG3199 92 AVRRMVERGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAG 132 (355)
T ss_pred HHHHHHhcCceEEEEeCCCccHHHHHhhccCCCceEeeccc
Confidence 4455655 9999999999998887777 8999999964
No 432
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=43.08 E-value=26 Score=25.89 Aligned_cols=66 Identities=17% Similarity=0.203 Sum_probs=33.6
Q ss_pred eEEEEEeCCCccccc--ccccCCcceEEEE-eChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEE
Q 042754 46 HLLIQMGRGTYVPTK--SLGEDGLMAVDYF-TFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVV 111 (178)
Q Consensus 46 ~vvv~~G~~~~~~~~--~~~~~~~~nv~v~-~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~ivi 111 (178)
+-+++.|.+...... ....+....+.+. .+++++.++.+.||+||+-.|---....-....=.++|
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~gavVI 105 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQEITRRADIVVSAVGKPNLIKADWIKPGAVVI 105 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTEEEE
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCcccceeeeccEEeeeeccccccccccccCCcEEE
Confidence 566777876532221 0001123445444 45678999999999999988854444443333333433
No 433
>PLN00016 RNA-binding protein; Provisional
Probab=43.06 E-value=1.9e+02 Score=23.90 Aligned_cols=34 Identities=9% Similarity=0.206 Sum_probs=22.3
Q ss_pred hHHHHh--hhccEEEecCC-----hHHHHHHHH-cCCCEEEE
Q 042754 78 SIADHL--RSASLVISHAG-----SGSIFETLR-HGKPLIVV 111 (178)
Q Consensus 78 ~~~~~~--~~adlvIshaG-----~~Ti~E~l~-~g~P~ivi 111 (178)
++..++ ..+|+||+-+| ...+.|++. .|+.-++.
T Consensus 121 d~~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~ 162 (378)
T PLN00016 121 DVKSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLF 162 (378)
T ss_pred HHHhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 355555 35899998776 335667665 78876654
No 434
>PRK06949 short chain dehydrogenase; Provisional
Probab=42.89 E-value=78 Score=24.18 Aligned_cols=14 Identities=14% Similarity=0.311 Sum_probs=11.2
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++||++|+.+.+
T Consensus 9 ~k~ilItGasg~IG 22 (258)
T PRK06949 9 GKVALVTGASSGLG 22 (258)
T ss_pred CCEEEEECCCcHHH
Confidence 57899999987654
No 435
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=42.52 E-value=1e+02 Score=20.53 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=40.8
Q ss_pred CcEEEEEeCCc-cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEE
Q 042754 11 KRIVFVTVGTT-CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLV 89 (178)
Q Consensus 11 ~~~ilVt~Gs~-~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlv 89 (178)
.+.|||.||+. +...+. .|.+.+. ++.++.... . .... ...+.-..| .+.+..+++|
T Consensus 7 ~~~vlVvGgG~va~~k~~----------~Ll~~gA-~v~vis~~~-~-~~~~-----~i~~~~~~~----~~~l~~~~lV 64 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKAR----------LLLEAGA-KVTVISPEI-E-FSEG-----LIQLIRREF----EEDLDGADLV 64 (103)
T ss_dssp T-EEEEEEESHHHHHHHH----------HHCCCTB-EEEEEESSE-H-HHHT-----SCEEEESS-----GGGCTTESEE
T ss_pred CCEEEEECCCHHHHHHHH----------HHHhCCC-EEEEECCch-h-hhhh-----HHHHHhhhH----HHHHhhheEE
Confidence 45666666654 443332 2334565 777776653 1 0010 122332233 3557889999
Q ss_pred EecCChHHHHHHHH-----cCCCEEEE
Q 042754 90 ISHAGSGSIFETLR-----HGKPLIVV 111 (178)
Q Consensus 90 IshaG~~Ti~E~l~-----~g~P~ivi 111 (178)
|...|--.+.+.++ .|+|.-++
T Consensus 65 ~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 65 FAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp EE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred EecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 99888766555433 67776654
No 436
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=42.51 E-value=1.8e+02 Score=23.49 Aligned_cols=18 Identities=6% Similarity=0.128 Sum_probs=13.4
Q ss_pred hHHHHhhh--ccEEEecCCh
Q 042754 78 SIADHLRS--ASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG~ 95 (178)
.+.+++.. +|+|||-|+.
T Consensus 69 ~l~~~~~~~~~d~ViH~Aa~ 88 (343)
T TIGR01472 69 NLRRIIDEIKPTEIYNLAAQ 88 (343)
T ss_pred HHHHHHHhCCCCEEEECCcc
Confidence 36667775 5999998874
No 437
>PRK13463 phosphatase PhoE; Provisional
Probab=42.40 E-value=22 Score=26.96 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=18.0
Q ss_pred EEEecCChHHHHHHHHcCCCE
Q 042754 88 LVISHAGSGSIFETLRHGKPL 108 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~ 108 (178)
+||||||...+.-+..+|.|.
T Consensus 147 lvVsHg~~ir~~~~~~~~~~~ 167 (203)
T PRK13463 147 LIVSHAAAAKLLVGHFAGIEI 167 (203)
T ss_pred EEEeChHHHHHHHHHHhCCCH
Confidence 889999999888888888664
No 438
>PLN02572 UDP-sulfoquinovose synthase
Probab=42.38 E-value=71 Score=27.40 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCCCCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 7 SVSLKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 7 ~~~~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
...+.+.|||||||...+ .+.+.+ ...++ +|++.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L---------~~~G~-~V~~~ 77 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHL---------SKRGY-EVAIV 77 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHH---------HHCCC-eEEEE
Confidence 334567899999976433 343333 34565 66653
No 439
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=42.35 E-value=1.3e+02 Score=23.44 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=48.4
Q ss_pred CCCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccE
Q 042754 9 SLKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASL 88 (178)
Q Consensus 9 ~~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adl 88 (178)
++.+.|++..||...++.+..+.+ .+.+.+...+. ++-++--. . .+.... .. . . .+-+..+.+.+..||.
T Consensus 24 ~~~~kI~~I~GSlR~~S~n~~la~-~~~~~~~~~g~-~v~~idl~-~-lPl~~~--d~-~--~-~p~v~~l~~~v~~ADg 93 (219)
T TIGR02690 24 PHIPRILLLYGSLRERSYSRLLAE-EAARLLGCEGR-ETRIFDPP-G-LPLPDA--AH-A--D-HPKVRELRQLSEWSEG 93 (219)
T ss_pred CCCCEEEEEECCCCCcchHHHHHH-HHHHHHhhcCC-EEEEeCcc-c-CCCCCc--Cc-c--c-CHHHHHHHHHHHhCCE
Confidence 456789999999865555555421 12334443454 55443321 1 111100 00 1 1 2333457888899997
Q ss_pred EE-ecCChH-----HHHHH---H---------HcCCCEEEEeCC
Q 042754 89 VI-SHAGSG-----SIFET---L---------RHGKPLIVVVNE 114 (178)
Q Consensus 89 vI-shaG~~-----Ti~E~---l---------~~g~P~iviP~~ 114 (178)
+| .-+.++ ++-.+ + ..|||+-++-..
T Consensus 94 vii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 94 QVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred EEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC
Confidence 64 223322 22222 2 358999887543
No 440
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=42.33 E-value=1.5e+02 Score=24.71 Aligned_cols=56 Identities=21% Similarity=0.182 Sum_probs=36.8
Q ss_pred hHHHHhhhccEEEecCChH----HHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 78 SIADHLRSASLVISHAGSG----SIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~----Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
++.++++.+|+||+-+|.- -+--|+..|++.|=..+ ....+....+...+.|..+.
T Consensus 60 ~l~~~~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~---~~~~~~~l~~~a~~~g~~~l 119 (386)
T PF03435_consen 60 SLAELLRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSY---VTEEMLALDEEAKEAGVTAL 119 (386)
T ss_dssp HHHHHHTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS----HHHHHHHCHHHHHHTTSEEE
T ss_pred HHHHHHhcCCEEEECCccchhHHHHHHHHHhCCCeeccch---hHHHHHHHHHHHHhhCCEEE
Confidence 3888999999999998864 23345778999886222 12345666667778888753
No 441
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=42.31 E-value=1.1e+02 Score=23.11 Aligned_cols=76 Identities=13% Similarity=0.172 Sum_probs=37.1
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCCCccccc--ccccCCcceEEEE--eChh--hHHHHh
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTK--SLGEDGLMAVDYF--TFSS--SIADHL 83 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~--~~~~~~~~nv~v~--~~~~--~~~~~~ 83 (178)
.+.+||++||.+.+ .+.+ .+.+.++ ++++.++.+...... ........++.++ +..+ ++...+
T Consensus 5 ~~~ilI~Gasg~iG~~la~---------~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 74 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAE---------LLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLV 74 (247)
T ss_pred CCEEEEeCCCcHHHHHHHH---------HHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHH
Confidence 46899999986543 2322 2344575 776654543211100 0000011233333 3321 233333
Q ss_pred h-------hccEEEecCChH
Q 042754 84 R-------SASLVISHAGSG 96 (178)
Q Consensus 84 ~-------~adlvIshaG~~ 96 (178)
. ..|++|+-+|..
T Consensus 75 ~~~~~~~~~id~vi~~ag~~ 94 (247)
T PRK05565 75 EQIVEKFGKIDILVNNAGIS 94 (247)
T ss_pred HHHHHHhCCCCEEEECCCcC
Confidence 3 689999999854
No 442
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.10 E-value=94 Score=24.03 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=19.7
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
..++++||+|+.+.+. .+ ...|...++ ++++.
T Consensus 9 ~~k~~lItGa~~~iG~---~i-----a~~l~~~G~-~vv~~ 40 (265)
T PRK07097 9 KGKIALITGASYGIGF---AI-----AKAYAKAGA-TIVFN 40 (265)
T ss_pred CCCEEEEeCCCchHHH---HH-----HHHHHHCCC-eEEEE
Confidence 3578999999876542 22 223345676 76655
No 443
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=41.97 E-value=19 Score=27.86 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.6
Q ss_pred EEEecCChHHHHHHHHcCCC
Q 042754 88 LVISHAGSGSIFETLRHGKP 107 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P 107 (178)
+||||||...+.=+..+|.|
T Consensus 178 lvVsHg~vir~ll~~~~~~~ 197 (228)
T PRK14116 178 IIAAHGNSLRALTKYIENIS 197 (228)
T ss_pred EEEcChHHHHHHHHHHhCCC
Confidence 79999999998888888866
No 444
>PRK06123 short chain dehydrogenase; Provisional
Probab=41.46 E-value=85 Score=23.79 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=10.6
Q ss_pred CcEEEEEeCCccHH
Q 042754 11 KRIVFVTVGTTCFD 24 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~ 24 (178)
.+++|||+|+.+.+
T Consensus 2 ~~~~lVtG~~~~iG 15 (248)
T PRK06123 2 RKVMIITGASRGIG 15 (248)
T ss_pred CCEEEEECCCchHH
Confidence 35799999987554
No 445
>PRK07576 short chain dehydrogenase; Provisional
Probab=41.01 E-value=90 Score=24.23 Aligned_cols=15 Identities=27% Similarity=0.291 Sum_probs=11.5
Q ss_pred CCcEEEEEeCCccHH
Q 042754 10 LKRIVFVTVGTTCFD 24 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~ 24 (178)
..+++|||+||.+.+
T Consensus 8 ~~k~ilItGasggIG 22 (264)
T PRK07576 8 AGKNVVVVGGTSGIN 22 (264)
T ss_pred CCCEEEEECCCchHH
Confidence 357899999987654
No 446
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=40.96 E-value=1.3e+02 Score=22.26 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=20.0
Q ss_pred hHHHHhhhccEEEecCChHH--HHHHHHcCCC
Q 042754 78 SIADHLRSASLVISHAGSGS--IFETLRHGKP 107 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~T--i~E~l~~g~P 107 (178)
++.+.++.||+||+-...+. ..+.-....|
T Consensus 90 ~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~ 121 (194)
T cd01078 90 ARAAAIKGADVVFAAGAAGVELLEKLAWAPKP 121 (194)
T ss_pred HHHHHHhcCCEEEECCCCCceechhhhcccCc
Confidence 45678899999999777666 3343333443
No 447
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=40.95 E-value=99 Score=23.38 Aligned_cols=21 Identities=38% Similarity=0.537 Sum_probs=13.7
Q ss_pred hHHHHhh--hccEEEecCChHHHH
Q 042754 78 SIADHLR--SASLVISHAGSGSIF 99 (178)
Q Consensus 78 ~~~~~~~--~adlvIshaG~~Ti~ 99 (178)
++.+++. .+|++|+ +|++.+.
T Consensus 70 ~~~~~l~~~~~D~iv~-~~~~~il 92 (190)
T TIGR00639 70 AIIEELRAHEVDLVVL-AGFMRIL 92 (190)
T ss_pred HHHHHHHhcCCCEEEE-eCcchhC
Confidence 4555564 6999999 4665443
No 448
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=40.46 E-value=28 Score=26.24 Aligned_cols=21 Identities=19% Similarity=0.033 Sum_probs=17.7
Q ss_pred EEEecCChHHHHHHHHcCCCE
Q 042754 88 LVISHAGSGSIFETLRHGKPL 108 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~ 108 (178)
+||||||.....=+..+|.|.
T Consensus 148 liVsHg~~ir~ll~~~lg~~~ 168 (204)
T TIGR03848 148 VACSHGDVIKSVLADALGMHL 168 (204)
T ss_pred EEEeCChHHHHHHHHHhCCCH
Confidence 799999998888888888764
No 449
>PF08599 Nbs1_C: DNA damage repair protein Nbs1; InterPro: IPR013908 This C-terminal region of the DNA damage repair protein Nbs1 has been identified to be necessary for the binding of Mre11 and Tel1 [].
Probab=40.33 E-value=3.1 Score=25.69 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=19.6
Q ss_pred hHHHHhhhccEEEecCChHHHHHH
Q 042754 78 SIADHLRSASLVISHAGSGSIFET 101 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti~E~ 101 (178)
.++.++..+||+++|+|-+|=+|-
T Consensus 17 ~lP~IIGGSDLi~h~~~knselee 40 (65)
T PF08599_consen 17 GLPHIIGGSDLIAHHAGKNSELEE 40 (65)
T ss_pred CCCeeecchhhhhccccccccHHH
Confidence 467788999999999998886553
No 450
>PRK06701 short chain dehydrogenase; Provisional
Probab=40.22 E-value=1.3e+02 Score=23.88 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=18.4
Q ss_pred cEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEE
Q 042754 12 RIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQM 51 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~ 51 (178)
+++|||+||.+.+. +.+ .|.+.++ ++++..
T Consensus 47 k~iLItGasggIG~~la~---------~l~~~G~-~V~l~~ 77 (290)
T PRK06701 47 KVALITGGDSGIGRAVAV---------LFAKEGA-DIAIVY 77 (290)
T ss_pred CEEEEeCCCcHHHHHHHH---------HHHHCCC-EEEEEe
Confidence 68999999876542 332 3345675 765543
No 451
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=40.11 E-value=1.2e+02 Score=20.69 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=44.4
Q ss_pred EEEEeCCc-cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccc-cc---cCCcceEEEEeChhhHHHHhhhccE
Q 042754 14 VFVTVGTT-CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKS-LG---EDGLMAVDYFTFSSSIADHLRSASL 88 (178)
Q Consensus 14 ilVt~Gs~-~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~-~~---~~~~~nv~v~~~~~~~~~~~~~adl 88 (178)
|.|.|.|. ....+.+.+. ....+ +++.+++......+.. .. .....++.+.++ +. +.+..+|+
T Consensus 2 V~IvGAtG~vG~~l~~lL~--------~hp~~-e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~Dv 69 (121)
T PF01118_consen 2 VAIVGATGYVGRELLRLLA--------EHPDF-ELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDA--DP-EELSDVDV 69 (121)
T ss_dssp EEEESTTSHHHHHHHHHHH--------HTSTE-EEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEET--SG-HHHTTESE
T ss_pred EEEECCCCHHHHHHHHHHh--------cCCCc-cEEEeeeeccccCCeeehhccccccccceeEeec--ch-hHhhcCCE
Confidence 45555442 3345666651 23345 8888888766211111 00 011235555552 33 44499999
Q ss_pred EEecCChHHHHHH----HHcCCCEE
Q 042754 89 VISHAGSGSIFET----LRHGKPLI 109 (178)
Q Consensus 89 vIshaG~~Ti~E~----l~~g~P~i 109 (178)
|++-.+.++..|. +..|.+.|
T Consensus 70 vf~a~~~~~~~~~~~~~~~~g~~Vi 94 (121)
T PF01118_consen 70 VFLALPHGASKELAPKLLKAGIKVI 94 (121)
T ss_dssp EEE-SCHHHHHHHHHHHHHTTSEEE
T ss_pred EEecCchhHHHHHHHHHhhCCcEEE
Confidence 9998888766654 35666333
No 452
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=39.95 E-value=1.7e+02 Score=22.36 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=38.8
Q ss_pred cEEEecCChHHHHHH----------------HHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 87 SLVISHAGSGSIFET----------------LRHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 87 dlvIshaG~~Ti~E~----------------l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
-.+|.-|...|++.. |.-++|.|++|+.....---.+|.-++.+.|+.+.
T Consensus 83 gMiI~PCSmkTla~IA~G~~dnLi~RAAdV~LKErR~LVLv~REtPl~~ihLeNMlkl~~~GaiI~ 148 (191)
T COG0163 83 GMIIAPCSMKTLAAIAHGFADNLITRAADVALKERRPLVLVPRETPLSLIHLENMLKLAEMGAIIM 148 (191)
T ss_pred cEEEEeCcHHHHHHHHhcccccHHHHHHHHHHhhCCceEEEeccCCccHHHHHHHHHHHHCCCEec
Confidence 477888888777764 45688999999976554445789999999998873
No 453
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.90 E-value=78 Score=25.73 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=32.7
Q ss_pred eEEEEEeCCCcccccc--cccCCcceEEEE-eChhhHHHHhhhccEEEecCChHHH
Q 042754 46 HLLIQMGRGTYVPTKS--LGEDGLMAVDYF-TFSSSIADHLRSASLVISHAGSGSI 98 (178)
Q Consensus 46 ~vvv~~G~~~~~~~~~--~~~~~~~nv~v~-~~~~~~~~~~~~adlvIshaG~~Ti 98 (178)
+-+++.|.+..-.+.. ........+.+. ..++++.++.+.||++|+-.|---+
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~ADIvI~AvG~p~~ 212 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKTRNLKQLTKEADILVVAVGVPHF 212 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCCCCHHHHHhhCCEEEEccCCcCc
Confidence 4566678776432210 011123455544 5677899999999999998775433
No 454
>PRK02399 hypothetical protein; Provisional
Probab=39.79 E-value=74 Score=27.29 Aligned_cols=94 Identities=23% Similarity=0.370 Sum_probs=51.1
Q ss_pred CCCCCcEEEEEe-CCccHHHHHHHhccHHHHHHHHhCCCC-eEEEEEeCCCcccccccccCCcceEEEEeChhh-HHHHh
Q 042754 7 SVSLKRIVFVTV-GTTCFDALVKAVDTLEVKQELTRRGYT-HLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS-IADHL 83 (178)
Q Consensus 7 ~~~~~~~ilVt~-Gs~~~~~l~~~~~~~~~~~~l~~~~~~-~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~-~~~~~ 83 (178)
...+||.|-+|. |... .- .+.+ .+.|.+.+|. -|+|.||..-..-++.-. ...=--+++++.. +.+.+
T Consensus 182 ~~~~kp~Ig~TmfGvTt-p~-v~~~-----~~~Le~~GyEvlVFHATG~GGraME~Li~--~G~~~gVlDlTttEv~d~l 252 (406)
T PRK02399 182 PSDDKPLIGLTMFGVTT-PC-VQAA-----REELEARGYEVLVFHATGTGGRAMEKLID--SGLIAGVLDLTTTEVCDEL 252 (406)
T ss_pred CCCCCceEEEecCCCcH-HH-HHHH-----HHHHHhCCCeEEEEcCCCCchHHHHHHHH--cCCceEEEEcchHHHHHHH
Confidence 355789987776 8431 11 1111 2344555541 477788876532221110 0111235677642 32222
Q ss_pred hhccEEEecCChHHHHHHHHcCCCEEEEe
Q 042754 84 RSASLVISHAGSGSIFETLRHGKPLIVVV 112 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~g~P~iviP 112 (178)
-.- |..+|..=+.-+...|+|+|+.|
T Consensus 253 ~GG---v~sagp~Rl~Aa~~~gIP~Vvs~ 278 (406)
T PRK02399 253 FGG---VLAAGPDRLEAAARTGIPQVVSP 278 (406)
T ss_pred hCc---CccCCccHHHHHHHcCCCEEecC
Confidence 211 44478888999999999999766
No 455
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=39.39 E-value=96 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.375 Sum_probs=18.3
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEe
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMG 52 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G 52 (178)
++++||+|+.+.. .+.+. |...+. ++++..-
T Consensus 1 k~~lItG~sg~iG~~la~~---------l~~~G~-~v~~~~r 32 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAER---------LAKDGF-AVAVADL 32 (254)
T ss_pred CEEEEeCCCchHHHHHHHH---------HHHCCC-EEEEEeC
Confidence 4689999987554 23333 345575 7665543
No 456
>PRK13054 lipid kinase; Reviewed
Probab=39.36 E-value=36 Score=27.42 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=25.4
Q ss_pred hhccEEEecCChHHHHHHHHc------C--CCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLRH------G--KPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~------g--~P~iviP~~ 114 (178)
...|+||.-||=||+.|++.. + .|+-++|..
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~G 93 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPLG 93 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeCC
Confidence 457999999999999999754 3 488888975
No 457
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=39.33 E-value=25 Score=27.23 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=17.5
Q ss_pred EEEecCChHHHHHHHHcCCC
Q 042754 88 LVISHAGSGSIFETLRHGKP 107 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P 107 (178)
+||||||...+.=+...|+|
T Consensus 178 lvVsHg~vir~l~~~~~~~~ 197 (228)
T PRK14119 178 LVSAHGNSIRALIKYLEDVS 197 (228)
T ss_pred EEEeChHHHHHHHHHHhCCC
Confidence 79999999988888888876
No 458
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=39.29 E-value=51 Score=27.35 Aligned_cols=30 Identities=30% Similarity=0.567 Sum_probs=22.8
Q ss_pred hccEEEecCChHHHHHHH-----HcCCCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFETL-----RHGKPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~l-----~~g~P~iviP~~~ 115 (178)
.+|+||.=|| |++.... ..|+|.|.||...
T Consensus 87 ~~d~IIaiGG-Gsv~D~ak~vA~~rgip~I~IPTT~ 121 (350)
T PRK00843 87 NAGFLIGVGG-GKVIDVAKLAAYRLGIPFISVPTAA 121 (350)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEeCCCc
Confidence 5799999877 5665543 4599999999863
No 459
>PRK00861 putative lipid kinase; Reviewed
Probab=39.00 E-value=82 Score=25.29 Aligned_cols=32 Identities=25% Similarity=0.438 Sum_probs=26.0
Q ss_pred hhccEEEecCChHHHHHHHH----cCCCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFETLR----HGKPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~ 115 (178)
...|+||.-||=||+.|++. .++|+-++|...
T Consensus 56 ~~~d~vv~~GGDGTl~evv~~l~~~~~~lgviP~GT 91 (300)
T PRK00861 56 RGAELIIASGGDGTLSAVAGALIGTDIPLGIIPRGT 91 (300)
T ss_pred cCCCEEEEECChHHHHHHHHHHhcCCCcEEEEcCCc
Confidence 45689999999999999864 567888899863
No 460
>PRK06349 homoserine dehydrogenase; Provisional
Probab=38.67 E-value=2.5e+02 Score=24.01 Aligned_cols=60 Identities=18% Similarity=0.321 Sum_probs=34.7
Q ss_pred ChhhHHHHhh--hccEEEec-CC----hHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 75 FSSSIADHLR--SASLVISH-AG----SGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 75 ~~~~~~~~~~--~adlvIsh-aG----~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
|..++.+++. ..|+||-- +| .--+.+++..|+..|. ..+.....|-.+..+..++.|..+
T Consensus 60 ~~~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVt-aNK~~~a~~~~eL~~lA~~~gv~l 126 (426)
T PRK06349 60 LTTDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVT-ANKALLAVHGAELFAAAEEKGVDL 126 (426)
T ss_pred eeCCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEE-cCHHHHHHHHHHHHHHHHHcCCcE
Confidence 4556788885 46888732 33 3345599999999986 333211223234444445667643
No 461
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=38.53 E-value=1.4e+02 Score=23.54 Aligned_cols=80 Identities=15% Similarity=0.127 Sum_probs=46.6
Q ss_pred HHHHHHH-HcCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE---------------eChhhHHHHHHccCcccCCCC-C
Q 042754 96 GSIFETL-RHGKPLIVVVNEDLMDNHQSELAEELAARKHLYC---------------AHPQSLHQVIAGMDLESLLPY-Q 158 (178)
Q Consensus 96 ~Ti~E~l-~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~---------------~~~~~L~~~i~~l~~~~~~~~-~ 158 (178)
..+.+++ ++|+.=|.+-.||. +.-+..-.++|++.|+-+. ++++.+.+++.++........ .
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~-~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifi 187 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYT-PETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFL 187 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCc-HHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEE
Confidence 3444444 35666555544432 3346677889999997651 378889888887742222211 1
Q ss_pred CC---ChhHHHHHHHHhcCCC
Q 042754 159 PG---DATPVAKLINRFLGFP 176 (178)
Q Consensus 159 ~~---~~~~i~~~i~~~~~~~ 176 (178)
.. ....+++.|++.+|.|
T Consensus 188 sCTnLrt~~vi~~lE~~lGkP 208 (239)
T TIGR02990 188 SCTALRAATCAQRIEQAIGKP 208 (239)
T ss_pred eCCCchhHHHHHHHHHHHCCC
Confidence 11 1226777777777765
No 462
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=38.37 E-value=25 Score=27.21 Aligned_cols=21 Identities=24% Similarity=0.169 Sum_probs=17.5
Q ss_pred EEEecCChHHHHHHHHcCCCE
Q 042754 88 LVISHAGSGSIFETLRHGKPL 108 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P~ 108 (178)
+||||||...+.=+...|.|.
T Consensus 177 lvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 177 LVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred EEEeCHHHHHHHHHHHhCCCH
Confidence 789999988888888888664
No 463
>PRK12939 short chain dehydrogenase; Provisional
Probab=38.16 E-value=1.3e+02 Score=22.72 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=18.5
Q ss_pred CcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEE
Q 042754 11 KRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQ 50 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~ 50 (178)
.+.++||+|+.+.+ .+.+.+ ...++ ++++.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l---------~~~G~-~v~~~ 37 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEAL---------AEAGA-TVAFN 37 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHH---------HHcCC-EEEEE
Confidence 47899999987554 333333 34565 76555
No 464
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=38.04 E-value=1.3e+02 Score=24.67 Aligned_cols=69 Identities=17% Similarity=0.289 Sum_probs=41.9
Q ss_pred HHhhhccEEEecCChHHHHHHHH----cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE-eChhhHHHHHHcc
Q 042754 81 DHLRSASLVISHAGSGSIFETLR----HGKPLIVVVNEDLMDNHQSELAEELAARKHLYC-AHPQSLHQVIAGM 149 (178)
Q Consensus 81 ~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~-~~~~~L~~~i~~l 149 (178)
+++..-|.|.|||-.+|+...+. .|++.-++.......++-...|+.|.+.|.-.. ++...+...+.++
T Consensus 116 ~~i~~g~~ILT~~~S~tv~~~l~~A~~~~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~~v 189 (310)
T PRK08535 116 KRIRDGDVIMTHCNSSAALSVIKTAHEQGKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMKDV 189 (310)
T ss_pred HHcCCCCEEEEeCCcHHHHHHHHHHHHCCCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHHhC
Confidence 44566788999999888775554 566654443322112334678999999998753 2333344444443
No 465
>PRK06487 glycerate dehydrogenase; Provisional
Probab=37.96 E-value=1.4e+02 Score=24.40 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=16.1
Q ss_pred hHHHHhhhccEEEecCChH
Q 042754 78 SIADHLRSASLVISHAGSG 96 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~ 96 (178)
++.++++.||+|+.|.-.+
T Consensus 190 ~l~ell~~sDiv~l~lPlt 208 (317)
T PRK06487 190 PLDELLPQVDALTLHCPLT 208 (317)
T ss_pred CHHHHHHhCCEEEECCCCC
Confidence 5899999999999987643
No 466
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=37.70 E-value=92 Score=24.42 Aligned_cols=34 Identities=12% Similarity=0.214 Sum_probs=24.6
Q ss_pred hHHHHhhhccEEEecCChHHH-----HHHHHcCCCEEEE
Q 042754 78 SIADHLRSASLVISHAGSGSI-----FETLRHGKPLIVV 111 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti-----~E~l~~g~P~ivi 111 (178)
++.+++..+|+||.-...-.. .-+...++|.|.-
T Consensus 107 ~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 107 ELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 477889999999986665443 2246789999863
No 467
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=37.66 E-value=1.5e+02 Score=22.08 Aligned_cols=32 Identities=13% Similarity=0.209 Sum_probs=19.0
Q ss_pred cEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 12 RIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 12 ~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
+++|||+||.+.+ .+.+.+ ...++ ++ +.++.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l---------~~~g~-~v-~~~~r~ 38 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRL---------AADGA-KV-VIYDSN 38 (246)
T ss_pred CEEEEECCCcHHHHHHHHHH---------HHCCC-EE-EEEeCC
Confidence 5799999986544 333333 34575 65 555544
No 468
>PRK13337 putative lipid kinase; Reviewed
Probab=37.24 E-value=73 Score=25.69 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=24.8
Q ss_pred hhccEEEecCChHHHHHHHH--c----CCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLR--H----GKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~--~----g~P~iviP~~ 114 (178)
...|+||.-||=||+.|++. . ..|+-++|..
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~G 92 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPVG 92 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECCc
Confidence 34689999999999999986 2 3477788975
No 469
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=37.23 E-value=3e+02 Score=24.53 Aligned_cols=44 Identities=27% Similarity=0.307 Sum_probs=31.1
Q ss_pred ceEEEE--eChhhHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 68 MAVDYF--TFSSSIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 68 ~nv~v~--~~~~~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
.++++. +|-| + .++...|=|-|.-. ++-.|++.+|+|.+..-.+
T Consensus 208 ~r~~ll~edfnp-i-sll~~~dkvy~~ts-~mgfeall~~~~~~~fg~p 253 (671)
T COG3563 208 HRVHLLAEDFNP-I-SLLQNVDKVYCVTS-QMGFEALLCGKPLTTFGLP 253 (671)
T ss_pred ceEEEecccCCh-H-HHHHhcceeEEeec-cccHHHHhcCCceeeecch
Confidence 445443 4433 3 78899998877644 5668999999999987444
No 470
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=36.76 E-value=49 Score=26.59 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=28.6
Q ss_pred HHHhhhccEEEecCChHHHHHHHHc----CCCEEEEeCC
Q 042754 80 ADHLRSASLVISHAGSGSIFETLRH----GKPLIVVVNE 114 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~~----g~P~iviP~~ 114 (178)
......+|++|+-||=||+..+... ++|.+-|+..
T Consensus 71 ~~~~~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~G 109 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDGTFLRAARLFGDYDIPILGINTG 109 (285)
T ss_dssp HHHCCCSSEEEEEESHHHHHHHHHHCTTST-EEEEEESS
T ss_pred hhcccCCCEEEEECCCHHHHHHHHHhccCCCcEEeecCC
Confidence 4567999999999999999999873 6799988763
No 471
>PRK06500 short chain dehydrogenase; Provisional
Probab=36.69 E-value=1.2e+02 Score=22.91 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=19.7
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
.+.++||+|+.+.+. +.+. |.+.++ ++++ ++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~---------l~~~g~-~v~~-~~r~ 39 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQ---------FLAEGA-RVAI-TGRD 39 (249)
T ss_pred CCEEEEeCCCchHHHHHHHH---------HHHCCC-EEEE-ecCC
Confidence 468999999876542 3333 345575 6654 4543
No 472
>PRK14117 gpmA phosphoglyceromutase; Provisional
Probab=36.44 E-value=28 Score=27.03 Aligned_cols=20 Identities=20% Similarity=0.119 Sum_probs=17.2
Q ss_pred EEEecCChHHHHHHHHcCCC
Q 042754 88 LVISHAGSGSIFETLRHGKP 107 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P 107 (178)
+||||||...+.=+..+|.|
T Consensus 178 lvVsHg~~ir~ll~~~lg~~ 197 (230)
T PRK14117 178 FVGAHGNSIRALVKHIKGLS 197 (230)
T ss_pred EEEeChHHHHHHHHHHhCcC
Confidence 89999999888888888865
No 473
>PRK07577 short chain dehydrogenase; Provisional
Probab=36.26 E-value=1.8e+02 Score=21.68 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=35.7
Q ss_pred CcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh---
Q 042754 11 KRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR--- 84 (178)
Q Consensus 11 ~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~--- 84 (178)
.+.+||++||.+.+. +.+ .+.+.++ ++++ ++....... +.++...+..+ .+..++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~---------~l~~~G~-~v~~-~~r~~~~~~-------~~~~~~~D~~~~~~~~~~~~~~~ 64 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSL---------RLANLGH-QVIG-IARSAIDDF-------PGELFACDLADIEQTAATLAQIN 64 (234)
T ss_pred CCEEEEECCCCcHHHHHHH---------HHHHCCC-EEEE-EeCCccccc-------CceEEEeeCCCHHHHHHHHHHHH
Confidence 367999999876553 322 2344565 6554 444332111 12333344432 2334443
Q ss_pred ---hccEEEecCCh
Q 042754 85 ---SASLVISHAGS 95 (178)
Q Consensus 85 ---~adlvIshaG~ 95 (178)
..|.+|+-+|.
T Consensus 65 ~~~~~d~vi~~ag~ 78 (234)
T PRK07577 65 EIHPVDAIVNNVGI 78 (234)
T ss_pred HhCCCcEEEECCCC
Confidence 46999998885
No 474
>PRK13055 putative lipid kinase; Reviewed
Probab=36.24 E-value=40 Score=27.75 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=24.9
Q ss_pred hhccEEEecCChHHHHHHHHc------CCCEEEEeCC
Q 042754 84 RSASLVISHAGSGSIFETLRH------GKPLIVVVNE 114 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~~------g~P~iviP~~ 114 (178)
..+|+||.-||=||+.|++.. +.|+-++|..
T Consensus 58 ~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~G 94 (334)
T PRK13055 58 AGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPAG 94 (334)
T ss_pred cCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECCC
Confidence 346899999999999999853 4678888975
No 475
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=35.88 E-value=2.6e+02 Score=23.28 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred HHHHhh--hccEEEecCChHHHHHHHHcCCCEEEEeCC
Q 042754 79 IADHLR--SASLVISHAGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 79 ~~~~~~--~adlvIshaG~~Ti~E~l~~g~P~iviP~~ 114 (178)
+..++. .-|++|++++.-..-=+..+|+|.|.+-..
T Consensus 75 l~~~~~~~~pDv~is~~s~~a~~va~~lgiP~I~f~D~ 112 (335)
T PF04007_consen 75 LLKLIKKFKPDVAISFGSPEAARVAFGLGIPSIVFNDT 112 (335)
T ss_pred HHHHHHhhCCCEEEecCcHHHHHHHHHhCCCeEEEecC
Confidence 444444 679999999877777889999999998654
No 476
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=35.63 E-value=1.7e+02 Score=22.89 Aligned_cols=18 Identities=11% Similarity=0.202 Sum_probs=14.2
Q ss_pred hHHHHhhh--ccEEEecCCh
Q 042754 78 SIADHLRS--ASLVISHAGS 95 (178)
Q Consensus 78 ~~~~~~~~--adlvIshaG~ 95 (178)
++.+++.. +|+||+-+|.
T Consensus 64 ~~~~~~~~~~~d~vi~~a~~ 83 (317)
T TIGR01181 64 LVSRLFTEHQPDAVVHFAAE 83 (317)
T ss_pred HHHHHHhhcCCCEEEEcccc
Confidence 36677776 8999999974
No 477
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=35.52 E-value=30 Score=26.00 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=18.3
Q ss_pred cEEEecCChHHHHHHHHcCCCE
Q 042754 87 SLVISHAGSGSIFETLRHGKPL 108 (178)
Q Consensus 87 dlvIshaG~~Ti~E~l~~g~P~ 108 (178)
-+||||+|...+.-+..+|.|.
T Consensus 144 iliVsHg~~i~~l~~~~~~~~~ 165 (199)
T PRK15004 144 LLIVSHQGVLSLLIARLLGMPA 165 (199)
T ss_pred EEEEcChHHHHHHHHHHhCCCH
Confidence 4789999998888888888764
No 478
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=35.52 E-value=1.1e+02 Score=25.88 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=22.6
Q ss_pred hhccEEEecCChHHHHHHH-----HcC------------------CCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFETL-----RHG------------------KPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l-----~~g------------------~P~iviP~~~ 115 (178)
..||.||+=|| ||.+.+. .+. .|+|.||...
T Consensus 85 ~~~D~iIalGG-GS~~D~AK~i~~~~~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 85 FGPDTIIALGG-GSVIDAAKAIALLAENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred cCCCEEEEeCC-ccHHHHHHHHHHHhhCCchhhhhcccccccCCCCCEEEecCCC
Confidence 57999999988 6666652 122 6899999864
No 479
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=35.38 E-value=60 Score=27.38 Aligned_cols=30 Identities=37% Similarity=0.548 Sum_probs=23.2
Q ss_pred hccEEEecCChHHHHHH-----HHcCCCEEEEeCCC
Q 042754 85 SASLVISHAGSGSIFET-----LRHGKPLIVVVNED 115 (178)
Q Consensus 85 ~adlvIshaG~~Ti~E~-----l~~g~P~iviP~~~ 115 (178)
.+|++|.=|| |++.+. -..|+|+|.+|...
T Consensus 84 ~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~A 118 (360)
T COG0371 84 GADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIA 118 (360)
T ss_pred CCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCcc
Confidence 4799999888 555543 45899999999863
No 480
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=35.38 E-value=31 Score=25.10 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=17.3
Q ss_pred cEEEecCChHHHHHHHHcCCC
Q 042754 87 SLVISHAGSGSIFETLRHGKP 107 (178)
Q Consensus 87 dlvIshaG~~Ti~E~l~~g~P 107 (178)
=+||||+|...++-+...|.|
T Consensus 140 vlvVsHg~~i~~l~~~~~~~~ 160 (177)
T TIGR03162 140 VLIVTHGGVIRALLAHLLGLP 160 (177)
T ss_pred EEEEECHHHHHHHHHHHhCCC
Confidence 368999999888888888876
No 481
>PTZ00122 phosphoglycerate mutase; Provisional
Probab=35.37 E-value=35 Score=27.81 Aligned_cols=20 Identities=10% Similarity=0.152 Sum_probs=18.0
Q ss_pred EEEecCChHHHHHHHHcCCC
Q 042754 88 LVISHAGSGSIFETLRHGKP 107 (178)
Q Consensus 88 lvIshaG~~Ti~E~l~~g~P 107 (178)
+||||||...+.=+..+|.|
T Consensus 236 LVVsHGgvIR~ll~~lLglp 255 (299)
T PTZ00122 236 IIVCHGNVIRYLVCRALQLP 255 (299)
T ss_pred EEEeCChHHHHHHHHHhCcC
Confidence 89999999999888888866
No 482
>PRK11269 glyoxylate carboligase; Provisional
Probab=35.14 E-value=1.6e+02 Score=26.28 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=43.7
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh-----HHHHhhhcc-----EEEecCC------hHHHH
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS-----IADHLRSAS-----LVISHAG------SGSIF 99 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~-----~~~~~~~ad-----lvIshaG------~~Ti~ 99 (178)
++.|.+.++.+++-+.|.....-...... ..+++++.-..+ |.+-++++. +++++.| .+.++
T Consensus 11 ~~~L~~~Gv~~vFg~pG~~~~~l~dal~~--~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~ 88 (591)
T PRK11269 11 VLVLEKEGVTTAFGVPGAAINPFYSAMRK--HGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLY 88 (591)
T ss_pred HHHHHHcCCCEEEeCCCcccHHHHHHHhh--cCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHH
Confidence 45667778767777778754211111100 112333332221 555555554 5666777 56789
Q ss_pred HHHHcCCCEEEEe
Q 042754 100 ETLRHGKPLIVVV 112 (178)
Q Consensus 100 E~l~~g~P~iviP 112 (178)
+|..-++|+|++.
T Consensus 89 ~A~~~~~Pvl~I~ 101 (591)
T PRK11269 89 SASADSIPILCIT 101 (591)
T ss_pred HHhhcCCCEEEEe
Confidence 9999999999984
No 483
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=35.06 E-value=1.2e+02 Score=26.77 Aligned_cols=75 Identities=31% Similarity=0.343 Sum_probs=44.5
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhh-----HHHHhhhcc----EEEecCChH------HHHH
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSS-----IADHLRSAS----LVISHAGSG------SIFE 100 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~-----~~~~~~~ad----lvIshaG~~------Ti~E 100 (178)
++.|.+.++.+++-+.|.....-..... ....++.+.-..+ |.+-+..+. +++++.|.| .+.|
T Consensus 16 ~~~L~~~GV~~vFgvpG~~~~~l~~~l~--~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~ 93 (568)
T PRK07449 16 LEELTRLGVRHVVIAPGSRSTPLTLAAA--EHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIE 93 (568)
T ss_pred HHHHHHcCCCEEEECCCCccHHHHHHHH--hCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHH
Confidence 5677788886788788876421111110 0123444433222 444443333 678888876 5789
Q ss_pred HHHcCCCEEEEe
Q 042754 101 TLRHGKPLIVVV 112 (178)
Q Consensus 101 ~l~~g~P~iviP 112 (178)
|-..++|+|+|.
T Consensus 94 A~~~~~Pvl~Is 105 (568)
T PRK07449 94 AGLTGVPLIVLT 105 (568)
T ss_pred HhhcCCcEEEEE
Confidence 999999999995
No 484
>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2. This enzyme is an alternative to PurN (TIGR00639)
Probab=35.02 E-value=2.6e+02 Score=23.05 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=57.8
Q ss_pred EEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhh--hccEE
Q 042754 14 VFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLR--SASLV 89 (178)
Q Consensus 14 ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~--~adlv 89 (178)
|+|.+|++....+.. ++++.++ +++++...... +... . .....+.++.+ .+.++.. .+|+|
T Consensus 2 ililG~g~~~~~l~~---------aa~~~G~-~v~~~d~~~~~-~~~~-~---ad~~~~~~~~d~~~l~~~~~~~~id~v 66 (380)
T TIGR01142 2 VLLLGSGELGKEVAI---------EAQRLGV-EVIAVDRYANA-PAMQ-V---AHRSYVINMLDGDALRAVIEREKPDYI 66 (380)
T ss_pred EEEECCCHHHHHHHH---------HHHHcCC-EEEEEeCCCCC-chhh-h---CceEEEcCCCCHHHHHHHHHHhCCCEE
Confidence 677777764433332 3356686 77666554322 2111 1 12233445542 2444444 59999
Q ss_pred EecCCh---HHHHHHHHcCCCEEEEeCCCCCC--chHHHHHHH-H-HhCCCEE-----EeChhhHHHHHHcc
Q 042754 90 ISHAGS---GSIFETLRHGKPLIVVVNEDLMD--NHQSELAEE-L-AARKHLY-----CAHPQSLHQVIAGM 149 (178)
Q Consensus 90 IshaG~---~Ti~E~l~~g~P~iviP~~~~~~--~~Q~~nA~~-l-~~~G~~~-----~~~~~~L~~~i~~l 149 (178)
+.-... .++.++-..|+|. .|...... .+- ...+. + .+.|+-. ..+.+++.+.+.++
T Consensus 67 ~~~~e~v~~~~~~~l~~~g~~~--~~~~~~~~~~~dK-~~~~~~~~~~~gip~p~~~~~~~~~~~~~~~~~~ 135 (380)
T TIGR01142 67 VPEIEAIATDALFELEKEGYFV--VPNARATKLTMNR-EGIRRLAAEELGLPTSRYMFADSLDELREAVEKI 135 (380)
T ss_pred EeccCccCHHHHHHHHhcCCee--CCCHHHHHHhhCH-HHHHHHHHHHCCCCCCCceEeCCHHHHHHHHHHc
Confidence 865432 3455555678763 34331110 111 12222 3 5777653 22566676666665
No 485
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=34.89 E-value=63 Score=29.27 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=25.2
Q ss_pred hHHHHhhhccEEEecC-----ChHHHHHHHHcCCCEEEEeC
Q 042754 78 SIADHLRSASLVISHA-----GSGSIFETLRHGKPLIVVVN 113 (178)
Q Consensus 78 ~~~~~~~~adlvIsha-----G~~Ti~E~l~~g~P~iviP~ 113 (178)
+..+++..||+-|--+ | -|-+|+.++|+|.|.--.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWG-YTPlE~~a~gVPsITTnL 501 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWG-YTPLECTAFGVPSITTNL 501 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS--HHHHHHHHTT--EEEETT
T ss_pred CHHHHhccCceeeecccccccc-CChHHHhhcCCceeeccc
Confidence 3678999999999987 6 589999999999997433
No 486
>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.
Probab=34.86 E-value=2.6e+02 Score=22.95 Aligned_cols=119 Identities=10% Similarity=0.019 Sum_probs=59.2
Q ss_pred EEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChh--hHHHHhhhccEEEe
Q 042754 14 VFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSS--SIADHLRSASLVIS 91 (178)
Q Consensus 14 ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~--~~~~~~~~adlvIs 91 (178)
|.+.+|++-.. .+ ..++++.++ ++++....... +... ......+.+|.+ .+.++...||++..
T Consensus 2 igiiG~gql~~----~l-----~~aa~~lG~-~v~~~d~~~~~-p~~~----~ad~~~~~~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 2 VGILGGGQLGR----ML-----ALAARPLGI-KVHVLDPDANS-PAVQ----VADHVVLAPFFDPAAIRELAESCDVITF 66 (352)
T ss_pred EEEECCCHHHH----HH-----HHHHHHcCC-EEEEECCCCCC-ChhH----hCceeEeCCCCCHHHHHHHHhhCCEEEe
Confidence 66777765333 33 223355687 87776554321 2211 112223445543 26667788897643
Q ss_pred c---CChHHHHHHHHcCCCEEEEeCCCCC--CchHHHHHHHHHhCCCEE-----EeChhhHHHHHHcc
Q 042754 92 H---AGSGSIFETLRHGKPLIVVVNEDLM--DNHQSELAEELAARKHLY-----CAHPQSLHQVIAGM 149 (178)
Q Consensus 92 h---aG~~Ti~E~l~~g~P~iviP~~~~~--~~~Q~~nA~~l~~~G~~~-----~~~~~~L~~~i~~l 149 (178)
- --..++.++...|+| +.|..... -.+-..--+.+.+.|+.. ..+.+++.+.+.++
T Consensus 67 e~e~i~~~~l~~l~~~g~~--~~p~~~~~~~~~dK~~~k~~l~~~gip~p~~~~~~~~~~~~~~~~~~ 132 (352)
T TIGR01161 67 EFEHVDVEALEKLEARGVK--LFPSPDALAIIQDRLTQKQFLQKLGLPVPPFLVIKDEEELDAALQEL 132 (352)
T ss_pred CcCcCCHHHHHHHHhCCCe--ECCCHHHHHHhcCHHHHHHHHHHcCCCCCCccEeCCHHHHHHHHHHc
Confidence 1 122244455556766 23554211 122333445677788764 22566676666655
No 487
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=34.84 E-value=76 Score=25.35 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=26.5
Q ss_pred HHHHh--hhccEEEec--------------CChHHHHHHHHcCCCEEEEeCC
Q 042754 79 IADHL--RSASLVISH--------------AGSGSIFETLRHGKPLIVVVNE 114 (178)
Q Consensus 79 ~~~~~--~~adlvIsh--------------aG~~Ti~E~l~~g~P~iviP~~ 114 (178)
+..++ ..-|+|||- |=.+..+|+..+|+|+|.+-..
T Consensus 75 l~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 75 LNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred HHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 66778 348998872 1223578999999999998765
No 488
>PRK08303 short chain dehydrogenase; Provisional
Probab=34.75 E-value=89 Score=25.20 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..++++||+||.|.+.- + .+.|...++ +|++ ++.+
T Consensus 7 ~~k~~lITGgs~GIG~a---i-----a~~la~~G~-~Vv~-~~r~ 41 (305)
T PRK08303 7 RGKVALVAGATRGAGRG---I-----AVELGAAGA-TVYV-TGRS 41 (305)
T ss_pred CCCEEEEeCCCchHHHH---H-----HHHHHHCCC-EEEE-Eecc
Confidence 35799999999876522 2 233445676 7665 4543
No 489
>PRK06198 short chain dehydrogenase; Provisional
Probab=34.72 E-value=1.9e+02 Score=22.07 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=20.2
Q ss_pred CCcEEEEEeCCccHHH-HHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFDA-LVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~-l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..++++|++|+.+.+. +.+ .|...+. +.|+.++..
T Consensus 5 ~~k~vlItGa~g~iG~~la~---------~l~~~G~-~~V~~~~r~ 40 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIAR---------AFAERGA-AGLVICGRN 40 (260)
T ss_pred CCcEEEEeCCCchHHHHHHH---------HHHHCCC-CeEEEEcCC
Confidence 3478999998876543 322 2334565 634455554
No 490
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=34.61 E-value=46 Score=27.31 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=22.6
Q ss_pred hhccEEEecCChHHHHHHHH------c------CCCEEEEeCCC
Q 042754 84 RSASLVISHAGSGSIFETLR------H------GKPLIVVVNED 115 (178)
Q Consensus 84 ~~adlvIshaG~~Ti~E~l~------~------g~P~iviP~~~ 115 (178)
..+|+||.=|| |+++++.- . ++|.|.||...
T Consensus 77 ~~~d~IiaiGG-Gs~~D~aKa~a~~~~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 77 FKPDIVIALGG-GSAIDAAKAIIYFAKKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred cCCCEEEEECC-chHHHHHHHHHHHHhCCCCCCCCCEEEeCCCC
Confidence 35899999877 66666543 1 47999999753
No 491
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=34.47 E-value=2.1e+02 Score=21.81 Aligned_cols=84 Identities=25% Similarity=0.271 Sum_probs=44.5
Q ss_pred CcEEEEEeCCc-cHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEE--eChhhHHHHhhhcc
Q 042754 11 KRIVFVTVGTT-CFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYF--TFSSSIADHLRSAS 87 (178)
Q Consensus 11 ~~~ilVt~Gs~-~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~--~~~~~~~~~~~~ad 87 (178)
.+.|+|.||+. +...+ +. |.+.+. ++.++.......-.... . ..++.+. .|. ...+..++
T Consensus 9 gk~vlVvGgG~va~rk~-~~---------Ll~~ga-~VtVvsp~~~~~l~~l~-~--~~~i~~~~~~~~---~~dl~~~~ 71 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKA-RL---------LLKAGA-QLRVIAEELESELTLLA-E--QGGITWLARCFD---ADILEGAF 71 (205)
T ss_pred CCeEEEECcCHHHHHHH-HH---------HHHCCC-EEEEEcCCCCHHHHHHH-H--cCCEEEEeCCCC---HHHhCCcE
Confidence 34677777664 33322 22 234565 77776654321111110 0 1245443 343 35678999
Q ss_pred EEEecCChHHHH-----HHHHcCCCEEEE
Q 042754 88 LVISHAGSGSIF-----ETLRHGKPLIVV 111 (178)
Q Consensus 88 lvIshaG~~Ti~-----E~l~~g~P~ivi 111 (178)
+||...|-..+. +|-..|+|.-++
T Consensus 72 lVi~at~d~~ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 72 LVIAATDDEELNRRVAHAARARGVPVNVV 100 (205)
T ss_pred EEEECCCCHHHHHHHHHHHHHcCCEEEEC
Confidence 999988876333 344567777544
No 492
>PRK07035 short chain dehydrogenase; Provisional
Probab=34.18 E-value=1.2e+02 Score=23.19 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=20.8
Q ss_pred CCcEEEEEeCCccHH-HHHHHhccHHHHHHHHhCCCCeEEEEEeCC
Q 042754 10 LKRIVFVTVGTTCFD-ALVKAVDTLEVKQELTRRGYTHLLIQMGRG 54 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~-~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~ 54 (178)
..+++|||+||.+.+ .+.+ .|...++ ++++. +.+
T Consensus 7 ~~k~vlItGas~gIG~~l~~---------~l~~~G~-~Vi~~-~r~ 41 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAK---------LLAQQGA-HVIVS-SRK 41 (252)
T ss_pred CCCEEEEECCCcHHHHHHHH---------HHHHCCC-EEEEE-eCC
Confidence 457899999987654 2332 3345575 76655 443
No 493
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=33.85 E-value=2e+02 Score=23.32 Aligned_cols=56 Identities=23% Similarity=0.380 Sum_probs=36.6
Q ss_pred HHHhhhccEEEecCChHHHHHHHH----cCCCEEEEeCCCCCCchH-HHHHHHHHhCCCEEE
Q 042754 80 ADHLRSASLVISHAGSGSIFETLR----HGKPLIVVVNEDLMDNHQ-SELAEELAARKHLYC 136 (178)
Q Consensus 80 ~~~~~~adlvIshaG~~Ti~E~l~----~g~P~iviP~~~~~~~~Q-~~nA~~l~~~G~~~~ 136 (178)
.+++..-|.|.|||-.+|+...+. .|+..-++.... .+..| ...|+.|.+.|.-..
T Consensus 104 ~~~I~~g~~ILTh~~S~tv~~~l~~A~~~gk~~~V~v~Es-rP~~qG~~la~eL~~~GI~vt 164 (275)
T PRK08335 104 SELIDDGDVIITHSFSSAVLEILKTAKRKGKRFKVILTES-APDYEGLALANELEFLGIEFE 164 (275)
T ss_pred HHHcCCCCEEEEECCcHHHHHHHHHHHHcCCceEEEEecC-CCchhHHHHHHHHHHCCCCEE
Confidence 456677789999999999877764 566544332221 12223 345999999998754
No 494
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=33.71 E-value=79 Score=25.93 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=14.3
Q ss_pred CCcEEEEEeCCccHHHHH
Q 042754 10 LKRIVFVTVGTTCFDALV 27 (178)
Q Consensus 10 ~~~~ilVt~Gs~~~~~l~ 27 (178)
....|||||||.|.++++
T Consensus 37 ~g~~vLITGgg~GlGr~i 54 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLI 54 (300)
T ss_pred cCCEEEEeCCCchHHHHH
Confidence 367899999999887653
No 495
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=33.64 E-value=1.2e+02 Score=24.66 Aligned_cols=112 Identities=10% Similarity=0.037 Sum_probs=55.3
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeC--------hhhHHHHh
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTF--------SSSIADHL 83 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~--------~~~~~~~~ 83 (178)
-.||+|+.+..+..+.+.... ...+. +++.+..++......... ....+.++++ ...+.+++
T Consensus 96 iavl~Sg~g~nl~al~~~~~~-------~~l~~-~i~~visn~~~~~~~A~~--~gIp~~~~~~~~~~~~~~~~~~~~~l 165 (289)
T PRK13010 96 VVIMVSKFDHCLNDLLYRWRM-------GELDM-DIVGIISNHPDLQPLAVQ--HDIPFHHLPVTPDTKAQQEAQILDLI 165 (289)
T ss_pred EEEEEeCCCccHHHHHHHHHC-------CCCCc-EEEEEEECChhHHHHHHH--cCCCEEEeCCCcccccchHHHHHHHH
Confidence 345667666667777766621 22345 777777776532211111 1122333222 12244455
Q ss_pred h--hccEEEecCChHHHHHHHHcCC---------CEEEEeCCCCCCchHHHHHHHHHhCCCEE
Q 042754 84 R--SASLVISHAGSGSIFETLRHGK---------PLIVVVNEDLMDNHQSELAEELAARKHLY 135 (178)
Q Consensus 84 ~--~adlvIshaG~~Ti~E~l~~g~---------P~iviP~~~~~~~~Q~~nA~~l~~~G~~~ 135 (178)
. .+|++|. +|++-+...-.... |++ +|.......+|.....-...-|+.+
T Consensus 166 ~~~~~Dlivl-agym~il~~~~l~~~~~~iiNiHpSl-LP~f~G~~~~~~ai~~G~k~tG~Tv 226 (289)
T PRK13010 166 ETSGAELVVL-ARYMQVLSDDLSRKLSGRAINIHHSF-LPGFKGARPYHQAHARGVKLIGATA 226 (289)
T ss_pred HHhCCCEEEE-ehhhhhCCHHHHhhccCCceeeCccc-CCCCCCCCHHHHHHHcCCCeEEEEE
Confidence 4 4899999 78887764332222 444 2544444455544444333345443
No 496
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=33.60 E-value=50 Score=28.38 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=45.8
Q ss_pred HHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeChhhHHHHhhhccEEEecCChH------
Q 042754 23 FDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFSSSIADHLRSASLVISHAGSG------ 96 (178)
Q Consensus 23 ~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlvIshaG~~------ 96 (178)
++.+.+.+ ...|...++ .-+.++..... +....... ....+..+ +++..++..+|+|||--|+-
T Consensus 186 AGem~~lv-----a~~L~~~g~-~~i~IaNRT~e-rA~~La~~--~~~~~~~l-~el~~~l~~~DvVissTsa~~~ii~~ 255 (414)
T COG0373 186 AGEMGELV-----AKHLAEKGV-KKITIANRTLE-RAEELAKK--LGAEAVAL-EELLEALAEADVVISSTSAPHPIITR 255 (414)
T ss_pred ccHHHHHH-----HHHHHhCCC-CEEEEEcCCHH-HHHHHHHH--hCCeeecH-HHHHHhhhhCCEEEEecCCCccccCH
Confidence 33455555 446666776 66666776532 21110101 12445554 46899999999999976653
Q ss_pred -HHHHHHHcCCCEEEE
Q 042754 97 -SIFETLRHGKPLIVV 111 (178)
Q Consensus 97 -Ti~E~l~~g~P~ivi 111 (178)
.+.+++...+.+++|
T Consensus 256 ~~ve~a~~~r~~~liv 271 (414)
T COG0373 256 EMVERALKIRKRLLIV 271 (414)
T ss_pred HHHHHHHhcccCeEEE
Confidence 456666666664443
No 497
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=33.40 E-value=2.2e+02 Score=24.21 Aligned_cols=121 Identities=10% Similarity=0.065 Sum_probs=63.9
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEeCh--hhHHHHhhhccEE
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFTFS--SSIADHLRSASLV 89 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~~~--~~~~~~~~~adlv 89 (178)
++|.|.+|+| |-+++. .+-...++ +++++-...+. +... ....+..-.|. +.+.++...||++
T Consensus 2 ~tvgIlGGGQ----LgrMm~-----~aa~~lG~-~v~vLdp~~~~-PA~~----va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 2 KTVGILGGGQ----LGRMMA-----LAAARLGI-KVIVLDPDADA-PAAQ----VADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CeEEEEcCcH----HHHHHH-----HHHHhcCC-EEEEecCCCCC-chhh----cccceeecCCCCHHHHHHHHhhCCEE
Confidence 6788888887 444441 12245676 77776544332 2211 11223333333 2488888999988
Q ss_pred ---EecCChHHHHHHHHcCCCEEEEeCCCCCCchH--HHHHHHHHhCCCEE---E--eChhhHHHHHHccC
Q 042754 90 ---ISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQ--SELAEELAARKHLY---C--AHPQSLHQVIAGMD 150 (178)
Q Consensus 90 ---IshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q--~~nA~~l~~~G~~~---~--~~~~~L~~~i~~l~ 150 (178)
+=|-=.-++..+... ++. .|.+....--| ..-=++|.+.|+.+ + -+.+++..++.++.
T Consensus 67 T~EfE~V~~~aL~~l~~~-~~v--~p~~~~l~~~qdR~~eK~~l~~~Gi~va~~~~v~~~~el~~~~~~~g 134 (375)
T COG0026 67 TYEFENVPAEALEKLAAS-VKV--FPSPDALRIAQDRLVEKQFLDKAGLPVAPFQVVDSAEELDAAAADLG 134 (375)
T ss_pred EEeeccCCHHHHHHHHhh-cCc--CCCHHHHHHHhhHHHHHHHHHHcCCCCCCeEEeCCHHHHHHHHHHcC
Confidence 445554444444443 332 25442222122 22334677777764 2 26778888887764
No 498
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=33.37 E-value=2.4e+02 Score=22.17 Aligned_cols=101 Identities=19% Similarity=0.284 Sum_probs=57.0
Q ss_pred cEEEEEeCCccHHHHHHHhccHHHHHHHHh-CCCCeEEEEEeCCCc-ccccccccCCcceEEEEeChhhHHHHhhhccEE
Q 042754 12 RIVFVTVGTTCFDALVKAVDTLEVKQELTR-RGYTHLLIQMGRGTY-VPTKSLGEDGLMAVDYFTFSSSIADHLRSASLV 89 (178)
Q Consensus 12 ~~ilVt~Gs~~~~~l~~~~~~~~~~~~l~~-~~~~~vvv~~G~~~~-~~~~~~~~~~~~nv~v~~~~~~~~~~~~~adlv 89 (178)
+..++-+|..|...+.+.+ ++..++ .++ .|-++ |.+.. .+.. +. .-+++|-+- -..|+|
T Consensus 4 kig~ik~GniGts~v~dll-----lDErAdRedi-~vrVv-gsgaKM~Pe~---------ve--aav~~~~e~-~~pDfv 64 (277)
T COG1927 4 KIGFIKCGNIGTSPVVDLL-----LDERADREDI-EVRVV-GSGAKMDPEC---------VE--AAVTEMLEE-FNPDFV 64 (277)
T ss_pred EEEEEEecccchHHHHHHH-----HHhhcccCCc-eEEEe-ccccccChHH---------HH--HHHHHHHHh-cCCCEE
Confidence 4567888988887777777 333333 454 44433 33321 2221 00 011122111 234555
Q ss_pred Ee------cCChHHHHHHHH-cCCCEEEEeCCCCCCchHHHHHHHHHhCCCEEE
Q 042754 90 IS------HAGSGSIFETLR-HGKPLIVVVNEDLMDNHQSELAEELAARKHLYC 136 (178)
Q Consensus 90 Is------haG~~Ti~E~l~-~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~~~ 136 (178)
|- ..|....-|.+. .++|.|+|-... -..--..+++.|+|+.
T Consensus 65 i~isPNpaaPGP~kARE~l~~s~~PaiiigDaP-----g~~vkdeleeqGlGYI 113 (277)
T COG1927 65 IYISPNPAAPGPKKAREILSDSDVPAIIIGDAP-----GLKVKDELEEQGLGYI 113 (277)
T ss_pred EEeCCCCCCCCchHHHHHHhhcCCCEEEecCCc-----cchhHHHHHhcCCeEE
Confidence 43 357777778876 799999986542 3455667899999964
No 499
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=33.32 E-value=96 Score=21.22 Aligned_cols=61 Identities=18% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHhCCCCeEEEEEeCCCcccccccccCCcceEEEEe-------Ch--hhHHHHhhhccEEEecCChHHHHH
Q 042754 36 KQELTRRGYTHLLIQMGRGTYVPTKSLGEDGLMAVDYFT-------FS--SSIADHLRSASLVISHAGSGSIFE 100 (178)
Q Consensus 36 ~~~l~~~~~~~vvv~~G~~~~~~~~~~~~~~~~nv~v~~-------~~--~~~~~~~~~adlvIshaG~~Ti~E 100 (178)
++++++.++ +.+++.-..+....... ........+ |. +.+-++.....+...|+|+|-++|
T Consensus 18 ~ra~r~~Gi-~tv~v~s~~d~~s~~~~---~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~~~i~pGyg~lse 87 (110)
T PF00289_consen 18 IRALRELGI-ETVAVNSNPDTVSTHVD---MADEAYFEPPGPSPESYLNIEAIIDIARKEGADAIHPGYGFLSE 87 (110)
T ss_dssp HHHHHHTTS-EEEEEEEGGGTTGHHHH---HSSEEEEEESSSGGGTTTSHHHHHHHHHHTTESEEESTSSTTTT
T ss_pred HHHHHHhCC-cceeccCchhccccccc---ccccceecCcchhhhhhccHHHHhhHhhhhcCcccccccchhHH
Confidence 456677887 87777665432111111 112333333 33 334455555567777888775544
No 500
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=32.87 E-value=68 Score=23.66 Aligned_cols=51 Identities=22% Similarity=0.132 Sum_probs=33.3
Q ss_pred hHHHHhhhccEEEecCChHHHHHHHHcCCCEEEEeCCCCCCchHHHHHHHHHhCCCE--EE-------eChhhHHHHHHc
Q 042754 78 SIADHLRSASLVISHAGSGSIFETLRHGKPLIVVVNEDLMDNHQSELAEELAARKHL--YC-------AHPQSLHQVIAG 148 (178)
Q Consensus 78 ~~~~~~~~adlvIshaG~~Ti~E~l~~g~P~iviP~~~~~~~~Q~~nA~~l~~~G~~--~~-------~~~~~L~~~i~~ 148 (178)
++.++++.||+|+.|.-.+ | +.+...|++.|+...-+ +. ++.+.|.+++++
T Consensus 84 ~l~ell~~aDiv~~~~plt---------------~-----~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~ 143 (178)
T PF02826_consen 84 SLDELLAQADIVSLHLPLT---------------P-----ETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES 143 (178)
T ss_dssp SHHHHHHH-SEEEE-SSSS---------------T-----TTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT
T ss_pred ehhhhcchhhhhhhhhccc---------------c-----ccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh
Confidence 5899999999999886532 1 23567788888886533 22 377788888865
Done!