BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042756
(425 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225428119|ref|XP_002278390.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17033
[Vitis vinifera]
gi|297744557|emb|CBI37819.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 268/425 (63%), Positives = 325/425 (76%), Gaps = 16/425 (3%)
Query: 1 MISSLHMRIPPPWNSRCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRL 60
M+++L + P PWN R L+QC L+KQGQ FLSS+A RD A++RL
Sbjct: 1 MLANLQVSRPQPWNHRSP-------LLIQC---ALSKQGQLFLSSVA----RDPSASNRL 46
Query: 61 ISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAF 120
I KF+ASS + IALNALSHLLSP TTHP LSSLA PLY RI+E SWF WNPKL+A++IA
Sbjct: 47 ICKFIASSSKSIALNALSHLLSPTTTHPYLSSLALPLYSRISEASWFSWNPKLIADVIAL 106
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L KQGQ +EAETL+ ETL KLGSRER+LV FYCNLIDS KH S +G D +RL+++V+
Sbjct: 107 LYKQGQLKEAETLVSETLIKLGSRERDLVSFYCNLIDSHSKHSSNQGVFDVISRLSRIVS 166
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SSSVYVK +A KSMIS LC +G P EAENLIEEMRVKGL+PS FE++ ++YGYGR+GL
Sbjct: 167 ESSSVYVKERAYKSMISSLCAVGLPLEAENLIEEMRVKGLKPSVFEFRSVVYGYGRVGLS 226
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
EDM+RI+ QM ++G +DTV SNMVLSSYG +N+ S MV WLQ+MK+S IPFS+RTYNSV
Sbjct: 227 EDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVSWLQRMKNSSIPFSIRTYNSV 286
Query: 301 LNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKL 360
LNSC IMS+LQDL + FP +I EL E L +E +VKEL S VL E M+WD E KL
Sbjct: 287 LNSCPMIMSILQDLKT--FPPTIDELMETLKGDEALLVKELIGSMVLAELMEWDCSEGKL 344
Query: 361 DLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKK 420
DLHGMHLGSAY I+LQW +E+R R N ++V+P EITVVCGSGKHS+VRGES VK MV++
Sbjct: 345 DLHGMHLGSAYLIMLQWREELRYRLNAAEYVMPVEITVVCGSGKHSSVRGESPVKRMVRE 404
Query: 421 MMVRT 425
MM RT
Sbjct: 405 MMTRT 409
>gi|255560449|ref|XP_002521239.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539507|gb|EEF41095.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 460
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 256/418 (61%), Positives = 317/418 (75%), Gaps = 18/418 (4%)
Query: 9 IPPPWNSRCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTR-DSKAASRLISKFVAS 67
+P W RC A L+KQGQRFLSSLA+A T+ D+ A +RLI KFVA+
Sbjct: 34 LPMKWVFRC---------------AALSKQGQRFLSSLAIATTKGDTVATNRLIKKFVAA 78
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP+ IAL+ALSHLL+P ++H LSSLAF LY++I E WFQWNPKLVA+++AFLDKQG+
Sbjct: 79 SPKSIALDALSHLLNPHSSHSHLSSLAFTLYLKIAEARWFQWNPKLVADVVAFLDKQGRY 138
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+E+ TL+ +++SKL +ER+L FYCNL++S K +S RGFD++ A L QLV +S+SVYV
Sbjct: 139 DESATLVSDSISKLQVKERDLARFYCNLVESQSKQNSIRGFDNSVASLMQLVCNSNSVYV 198
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
KRQ KSM++GLCEMG+P EAE LIEEM +G+ PS FE+KC++Y YG LG E+M + +
Sbjct: 199 KRQGYKSMVNGLCEMGRPREAETLIEEMGKEGVRPSMFEFKCVVYAYGSLGSFEEMNKCL 258
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+QME G RVDTVCSNM+L+SYG HN L MVLWLQKMKD GIPFS+RT NS LNSC TI
Sbjct: 259 HQMERAGFRVDTVCSNMILASYGAHNALPEMVLWLQKMKDLGIPFSLRTCNSALNSCPTI 318
Query: 308 MSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHL 367
MSM+Q NSNDFP+SI +L ++L+E+E +VKE+ SSVLDEAMKWD E KLDLHG HL
Sbjct: 319 MSMMQ--NSNDFPISIHDLMKILSEDEALLVKEIVTSSVLDEAMKWDVAEAKLDLHGTHL 376
Query: 368 GSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
SAY IIL W++EMR RF + +V P EITVVCGSG HS VRGES VK MVK MVR
Sbjct: 377 CSAYLIILLWIEEMRKRFKSVNYVNPTEITVVCGSGNHSIVRGESPVKCMVKDFMVRA 434
>gi|224103135|ref|XP_002312938.1| predicted protein [Populus trichocarpa]
gi|222849346|gb|EEE86893.1| predicted protein [Populus trichocarpa]
Length = 473
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 248/399 (62%), Positives = 319/399 (79%), Gaps = 4/399 (1%)
Query: 29 QCLTARLTKQGQRFLSS-LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH 87
+CL A ++KQ QRF S+ L T D+ A +RLI KFVASSP+ IAL+ALS+LLSPD+TH
Sbjct: 51 KCLAA-ISKQAQRFFSAVLPTVATSDTSATNRLIKKFVASSPKSIALDALSNLLSPDSTH 109
Query: 88 -PRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
P L L PLY++I+E SWF WNPKLVA+++ LDKQG +E + L+ ET+S+L +ER
Sbjct: 110 HPLLYLLTLPLYLKISEASWFSWNPKLVAQVVVLLDKQGLDKELKALMSETVSRLQFKER 169
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
ELVLFYCNLI KH+ RGFDD+Y+RLNQ V+ S+SVYVK+Q K+MISGLCEMG+
Sbjct: 170 ELVLFYCNLIGFNSKHNWVRGFDDSYSRLNQFVSDSNSVYVKKQGYKAMISGLCEMGRAR 229
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EAE+LI EMR +GL+P FE++C++YGYGRLGL +DMERI+++MES VDTVC+NMVL
Sbjct: 230 EAEDLIGEMRERGLKPKLFEFRCVLYGYGRLGLFKDMERILDKMESGEIEVDTVCANMVL 289
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILEL 326
+SYG HN L M LWL+KMK GIP S+RT NSVLNSC TIM+++++L+++ +P+SI EL
Sbjct: 290 ASYGAHNALPEMGLWLRKMKTLGIPLSIRTCNSVLNSCPTIMALMRNLDAS-YPVSIQEL 348
Query: 327 TEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386
++L+EEE +VKEL +SSVL EA KWD+ E KLDLHGMHLGSAY I+LQWM+E RNR +
Sbjct: 349 LKILSEEEAMLVKELIESSVLKEATKWDTSEGKLDLHGMHLGSAYVIMLQWMEETRNRLS 408
Query: 387 NEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
+ +HVIPAEITVVCGSG HSTVRGES VK+M+ ++M +T
Sbjct: 409 DGEHVIPAEITVVCGSGNHSTVRGESPVKSMITQIMAQT 447
>gi|18398289|ref|NP_565402.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|13877877|gb|AAK44016.1|AF370201_1 unknown protein [Arabidopsis thaliana]
gi|21280879|gb|AAM44931.1| unknown protein [Arabidopsis thaliana]
gi|330251481|gb|AEC06575.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/392 (60%), Positives = 298/392 (76%), Gaps = 3/392 (0%)
Query: 35 LTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL 93
L K G RFLSSL+ A+ D A +R I KFVA+SP+ +ALN LSHLLS T+HP LS
Sbjct: 88 LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 147
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A LY ITE SWF WNPKL+AE+IA L+KQ + +E+ETL+ +S+L S ER+ LF C
Sbjct: 148 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 207
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
NL++S K S +GF + RL +++ SSSVYVK QA KSM+SGLC M QPH+AE +IE
Sbjct: 208 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 267
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR++ ++P FEYK ++YGYGRLGL +DM R+V++M ++G ++DTVCSNMVLSSYG H+
Sbjct: 268 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 327
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEE 333
L +M WLQK+K +PFS+RTYNSVLNSC TI+SML+DL+S P+S+ EL LNE+
Sbjct: 328 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLDS--CPVSLSELRTFLNED 385
Query: 334 EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIP 393
E +V EL SSVLDEA++W++ E KLDLHGMHL S+Y I+LQWMDE R RF+ EK VIP
Sbjct: 386 EALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIP 445
Query: 394 AEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
AEI VV GSGKHS VRGES VKA+VKK+MVRT
Sbjct: 446 AEIVVVSGSGKHSNVRGESPVKALVKKIMVRT 477
>gi|110738240|dbj|BAF01049.1| hypothetical protein [Arabidopsis thaliana]
Length = 501
Score = 478 bits (1230), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/392 (60%), Positives = 298/392 (76%), Gaps = 3/392 (0%)
Query: 35 LTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL 93
L K G RFLSSL+ A+ D A +R I KFVA+SP+ +ALN LSHLLS T+HP LS
Sbjct: 85 LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 144
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A LY ITE SWF WNPKL+AE+IA L+KQ + +E+ETL+ +S+L S ER+ LF C
Sbjct: 145 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 204
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
NL++S K S +GF + RL +++ SSSVYVK QA KSM+SGLC M QPH+AE +IE
Sbjct: 205 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 264
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR++ ++P FEYK ++YGYGRLGL +DM R+V++M ++G ++DTVCSNMVLSSYG H+
Sbjct: 265 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 324
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEE 333
L +M WLQK+K +PFS+RTYNSVLNSC TI+SML+DL+S P+S+ EL LNE+
Sbjct: 325 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLDS--CPVSLSELRTFLNED 382
Query: 334 EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIP 393
E +V EL SSVLDEA++W++ E KLDLHGMHL S+Y I+LQWMDE R RF+ EK VIP
Sbjct: 383 EALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIP 442
Query: 394 AEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
AEI VV GSGKHS VRGES VKA+VKK+MVRT
Sbjct: 443 AEIVVVSGSGKHSNVRGESPVKALVKKIMVRT 474
>gi|30679852|ref|NP_849962.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75244359|sp|Q8GWA9.1|PP157_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17033
gi|26452937|dbj|BAC43545.1| unknown protein [Arabidopsis thaliana]
gi|330251482|gb|AEC06576.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 505
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/392 (60%), Positives = 298/392 (76%), Gaps = 3/392 (0%)
Query: 35 LTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL 93
L K G RFLSSL+ A+ D A +R I KFVA+SP+ +ALN LSHLLS T+HP LS
Sbjct: 89 LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A LY ITE SWF WNPKL+AE+IA L+KQ + +E+ETL+ +S+L S ER+ LF C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
NL++S K S +GF + RL +++ SSSVYVK QA KSM+SGLC M QPH+AE +IE
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR++ ++P FEYK ++YGYGRLGL +DM R+V++M ++G ++DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEE 333
L +M WLQK+K +PFS+RTYNSVLNSC TI+SML+DL+S P+S+ EL LNE+
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLDS--CPVSLSELRTFLNED 386
Query: 334 EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIP 393
E +V EL SSVLDEA++W++ E KLDLHGMHL S+Y I+LQWMDE R RF+ EK VIP
Sbjct: 387 EALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIP 446
Query: 394 AEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
AEI VV GSGKHS VRGES VKA+VKK+MVRT
Sbjct: 447 AEIVVVSGSGKHSNVRGESPVKALVKKIMVRT 478
>gi|297832300|ref|XP_002884032.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329872|gb|EFH60291.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 234/409 (57%), Positives = 303/409 (74%), Gaps = 3/409 (0%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNA 76
C R + + + L KQG RFLSSL+ A+ D A R I KFVA+SP+ + LN
Sbjct: 71 CTYRTKLVVRCKAGVVPLMKQGDRFLSSLSSPALAGDPSATHRHIKKFVAASPKSVTLNV 130
Query: 77 LSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILE 136
LSHLLS T++P LS A LY ITE SWF WNPKL+AE++A L+ Q + +E+ETL+
Sbjct: 131 LSHLLSDQTSYPHLSFFALSLYSEITEASWFDWNPKLIAELVAVLNNQERFDESETLLST 190
Query: 137 TLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196
+S+L S ER+ LF CNL++S K S +GF++ RL + + SSSVYVK QA KSM+
Sbjct: 191 AVSRLKSNERDFALFLCNLVESNSKQGSIQGFNEACFRLRERIQRSSSVYVKTQAYKSMV 250
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
+GLC M QPH+AE +IEEMRV+ ++P FE+K ++YGYGRLGL +DM R+V++ME++G +
Sbjct: 251 AGLCNMDQPHDAERVIEEMRVEKIKPGSFEHKSVLYGYGRLGLFDDMNRVVHRMETEGHK 310
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
+DTVCSNMVLSSYG H+ L +M WLQK+K +PFS+RTYNSVLNSC TIMS+L+DLNS
Sbjct: 311 IDTVCSNMVLSSYGAHDALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIMSLLKDLNS 370
Query: 317 NDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQ 376
P+S+ EL LNE+E +V EL S+VLDEA++W++ E KLDLHGMHL S+Y I+LQ
Sbjct: 371 --CPVSLSELRTFLNEDEALLVLELTQSTVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQ 428
Query: 377 WMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
WMDE+R RF ++K VIPAEI VV GSGKHS VRGES VKA+VKK+MVRT
Sbjct: 429 WMDEIRLRFRDQKCVIPAEIVVVSGSGKHSNVRGESPVKALVKKIMVRT 477
>gi|51477396|gb|AAU04769.1| pentatricopeptide (PPR) repeat protein-like [Cucumis melo]
Length = 488
Score = 456 bits (1173), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/402 (57%), Positives = 299/402 (74%), Gaps = 6/402 (1%)
Query: 28 VQCLTARLTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT 86
V+C T LTKQ RFLS+L+ T D A +RLI KFVASSP+ I L+ LS+++S T
Sbjct: 40 VKCTT--LTKQTHRFLSTLSTTGATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTP 97
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
P L S A LY RITE SWF WN KLVA+++AFL + G E+E LI E +SKLGS+ER
Sbjct: 98 QPELCSAALTLYSRITEASWFTWNSKLVADLVAFLGQNGLYSESEALISEAISKLGSQER 157
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
+LV FY L++S KH +RGF D+Y+RL +L+ +S SVYVKR+A +SM++GLC M +PH
Sbjct: 158 KLVNFYSQLVESQSKHGFERGFGDSYSRLFELLYNSPSVYVKRRAYESMVTGLCSMKRPH 217
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EAE+L++EMR KG+ P+ +EY+ IIY YG LGL E+M+R + QME+D +DTVCSNMVL
Sbjct: 218 EAESLVKEMRSKGITPTAYEYRSIIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVL 277
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
SSYG HN+L M+LWLQ+MK S SVRTYNSVLNSC I SMLQD S D P+ I +
Sbjct: 278 SSYGAHNKLGDMLLWLQRMKTSSHCKSSVRTYNSVLNSCPKITSMLQDHKSGDLPVLIED 337
Query: 326 LTEVLN-EEEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383
L +L+ +EE +VKE L SSVL+E M WD+ E KLDLHG H+G+AY I+LQW+ EMR
Sbjct: 338 LIAILDGDEEALLVKELLVGSSVLNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRL 397
Query: 384 RFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
F +E +VIPA++T++CGSGKHS VRGES VKA++K++MVRT
Sbjct: 398 NFEDESNVIPAQVTLICGSGKHSIVRGESPVKALIKEIMVRT 439
>gi|449482319|ref|XP_004156246.1| PREDICTED: uncharacterized protein LOC101223617 [Cucumis sativus]
Length = 1296
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 231/404 (57%), Positives = 299/404 (74%), Gaps = 10/404 (2%)
Query: 28 VQCLTARLTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT 86
V+C + LTKQ RFLS+L+ A T D A +RLI KFVASSP+ I L+ LS+++S T
Sbjct: 40 VKCTS--LTKQTHRFLSTLSTTAATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTP 97
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
P L S A LY RITE SWF WN KLVA+++AFLD+ G E+E LI E +SKLGS+ER
Sbjct: 98 QPELCSAALTLYSRITEASWFTWNSKLVADLVAFLDQNGLYSESEVLISEAISKLGSQER 157
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
+LV FY L++S KH +RGF D+Y+RL +L+ +S SVYVKR+A +SM++GLC M +PH
Sbjct: 158 KLVNFYSQLVESQSKHGFERGFVDSYSRLLELLYNSPSVYVKRRAYESMVTGLCSMKRPH 217
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EAENL++EMR KG+ P+ +EY+ IIY YG LGL E+M+R + QME+D +DTVCSNMVL
Sbjct: 218 EAENLVKEMRSKGITPTAYEYRSIIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVL 277
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPF---SVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323
SSYG HN+L MVLWLQ+MK S P SVRTYNSVLNSC I +MLQD S + P+ I
Sbjct: 278 SSYGAHNKLGDMVLWLQRMKTS--PHCNSSVRTYNSVLNSCPKITAMLQDHKSTNLPVLI 335
Query: 324 LELTEVLNEE--EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEM 381
+L VL+ + + V + L SSVL+E M WD+ E KLDLHG H+G+AY I+LQW+ EM
Sbjct: 336 EDLIAVLDGDEEALLVEELLAGSSVLNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEM 395
Query: 382 RNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
R F +E +VIPA++T++CGSGKHS VRGES VKA++K++MVRT
Sbjct: 396 RLNFEDESYVIPAQVTLICGSGKHSIVRGESPVKALIKEIMVRT 439
>gi|449447735|ref|XP_004141623.1| PREDICTED: uncharacterized protein LOC101204365 [Cucumis sativus]
Length = 1913
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 230/402 (57%), Positives = 298/402 (74%), Gaps = 6/402 (1%)
Query: 28 VQCLTARLTKQGQRFLSSLAL-AVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT 86
V+C + LTKQ RFLS+L+ A T D A +RLI KFVASSP+ I L+ LS+++S T
Sbjct: 40 VKCTS--LTKQTHRFLSTLSTTAATGDQSATNRLIRKFVASSPKSITLSVLSNIVSTHTP 97
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
P L S A LY RITE SWF WN KLVA+++AFLD+ G E+E LI E +SKLGS+ER
Sbjct: 98 QPELCSAALTLYSRITEASWFTWNSKLVADLVAFLDQNGLYSESEVLISEAISKLGSQER 157
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
+LV FY L++S KH +RGF D+Y+RL +L+ +S SVYVKR+A +SM++GLC M +PH
Sbjct: 158 KLVNFYSQLVESQSKHGFERGFVDSYSRLLELLYNSPSVYVKRRAYESMVTGLCSMKRPH 217
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EAENL++EMR KG+ P+ +EY+ IIY YG LGL E+M+R + QME+D +DTVCSNMVL
Sbjct: 218 EAENLVKEMRSKGITPTAYEYRSIIYAYGTLGLFEEMKRSLKQMENDNIELDTVCSNMVL 277
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
SSYG HN+L MVLWLQ+MK S SVRTYNSVLNSC I +MLQD S + P+ I +
Sbjct: 278 SSYGAHNKLGDMVLWLQRMKTSPHCNSSVRTYNSVLNSCPKITAMLQDHKSTNLPVLIED 337
Query: 326 LTEVLNEE--EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383
L VL+ + + V + L SSVL+E M WD+ E KLDLHG H+G+AY I+LQW+ EMR
Sbjct: 338 LIAVLDGDEEALLVEELLAGSSVLNEIMVWDAMELKLDLHGAHVGAAYVIMLQWIKEMRL 397
Query: 384 RFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
F +E +VIPA++T++CGSGKHS VRGES VKA++K++MVRT
Sbjct: 398 NFEDESYVIPAQVTLICGSGKHSIVRGESPVKALIKEIMVRT 439
>gi|356574131|ref|XP_003555205.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17033-like [Glycine max]
Length = 457
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/409 (53%), Positives = 278/409 (67%), Gaps = 15/409 (3%)
Query: 19 RLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALS 78
+L+Q R L T LTKQGQRFL+ L T S A LI +F+ +SP+ + L+ LS
Sbjct: 22 KLKQPRPQLQARCT--LTKQGQRFLTKL----TTSSATADNLIRRFLLASPKSVVLSTLS 75
Query: 79 HLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETL 138
HLLSP T++P LSSLA LY I++ WF WNP VAE+ A L G ++E+LI +
Sbjct: 76 HLLSPSTSYPHLSSLASQLYTGISQAPWFSWNPTTVAELAALLHSLGHHAQSESLISDAS 135
Query: 139 SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG 198
S+L SR+R+LVLFY LIDS K +S FD + L+ LV +SSS++VKR+A + M+SG
Sbjct: 136 SRLQSRQRDLVLFYGKLIDSHSKRNSHTAFDAAFGYLHNLVRTSSSLHVKRRAYQYMVSG 195
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC M +P EAE+L V GL+PSGFEYK I+YGYGRLGL DM R+V++ME +G VD
Sbjct: 196 LCLMDRPREAEDL-----VLGLQPSGFEYKSIVYGYGRLGLFNDMNRVVDEMERNGFAVD 250
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
TVC NMVLS+YG H E MV WL++M +SG+PFSVRTYNSV NSC +I M +DL+
Sbjct: 251 TVCYNMVLSTYGIHGEHVEMVRWLRRMSNSGVPFSVRTYNSVSNSCPSITRMTRDLSKLA 310
Query: 319 FPLSILELTEVLNEEEVSVVKE---LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIIL 375
LSI EL E L E VV+E L +L+E M WDS E KLDLHG HL SAY I+L
Sbjct: 311 L-LSISELKEGLEGGEGMVVRELLLLGSCGILEEVMVWDSSEVKLDLHGFHLASAYLIVL 369
Query: 376 QWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
W++EM R N+ + +PAE TVVCG GKHS+VRGES V+ +V+KMMV+
Sbjct: 370 LWLEEMGRRLNDSNYGVPAEFTVVCGLGKHSSVRGESPVRVLVQKMMVK 418
>gi|357444777|ref|XP_003592666.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481714|gb|AES62917.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 454
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 217/425 (51%), Positives = 279/425 (65%), Gaps = 34/425 (8%)
Query: 9 IPPPWNSRCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASS 68
+PPP +LR ++ ++C LTKQGQRFL+ L+ T LI KFV SS
Sbjct: 23 LPPP--QLQTQLRLKKNNTIRCT---LTKQGQRFLTKLSTTNTN----TENLIRKFVQSS 73
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P+ + L+ L+HLLSP T H LSSLA PLY RI+E W+ WNP + A++I L K +
Sbjct: 74 PKSVLLSTLTHLLSPTTAHHPLSSLALPLYTRISESQWYTWNPTIFADLITLLHKHQRYT 133
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
E++TLI E SKL ++ER++VLFY L+DS K S+ GFD Y+ LN L+ +SSS+YVK
Sbjct: 134 ESQTLISEATSKLNNKERDIVLFYAKLLDSHSKRASQTGFDFAYSHLNNLLRTSSSIYVK 193
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEM-RVKG-----LEPSGFEYKCIIYGYGRLGLLED 242
R+A +SM+SGLC M +P EAENL++E R G L+PS FE+K I+
Sbjct: 194 RRASESMVSGLCAMDKPREAENLVQEFKRTDGGGKIQLQPSAFEFKSIL----------- 242
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+V++ME++G +DTVC NMVLSS+G H E MV WL +M++SG+PFSVRTYNSV N
Sbjct: 243 ---VVDEMENNGFVIDTVCYNMVLSSFGIHGEYVEMVSWLTRMRNSGVPFSVRTYNSVSN 299
Query: 303 SCSTIMSMLQDLNSNDFPLSILE-LTEVLNEEEVSVVKELEDSSVL-DEAMKWDSGETKL 360
SC T+M + DL ND SI E L L E VVKEL +VL DE M WDS E KL
Sbjct: 300 SCPTVMRKVVDL--NDLAFSIEELLNSCLEGGEAMVVKELLSCNVLFDEVMVWDSKEVKL 357
Query: 361 DLHGMHLGSAYFIILQWMDEMRNR-FNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVK 419
DLHG HLGSAY ++L W++EM+ R N H IPAEITVVCG GKHS VRGES VK +VK
Sbjct: 358 DLHGFHLGSAYLVMLLWLEEMQKRLLNASNHDIPAEITVVCGVGKHSNVRGESPVKVLVK 417
Query: 420 KMMVR 424
+MM++
Sbjct: 418 EMMMK 422
>gi|147841851|emb|CAN67320.1| hypothetical protein VITISV_039345 [Vitis vinifera]
Length = 371
Score = 324 bits (831), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/254 (64%), Positives = 200/254 (78%), Gaps = 2/254 (0%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
I+E SWF WNPKL+A++IA L KQGQ +EAETL+ ETL KLGSRER+LV FYCNLIDS
Sbjct: 23 ISEASWFSWNPKLIADVIALLYKQGQLKEAETLVSETLIKLGSRERDLVSFYCNLIDSHS 82
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
KH S +G D +RL+++V+ SSSVYVK +A KSMIS LC +G P EAENLIEEMRVKGL
Sbjct: 83 KHSSNQGVFDVISRLSRIVSESSSVYVKERAYKSMISSLCAVGLPLEAENLIEEMRVKGL 142
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
+PS FE++ ++YGYGR+GL EDM+RI+ QM ++G +DTV SNMVLSSYG +N+ S MV
Sbjct: 143 KPSVFEFRSVVYGYGRVGLSEDMQRILLQMGNEGFELDTVVSNMVLSSYGAYNKQSEMVS 202
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKE 340
WLQ+MK+S IPFS+RTYNSVLNSC IMS+LQDL + FP +I EL E L +E +VKE
Sbjct: 203 WLQRMKNSSIPFSIRTYNSVLNSCPMIMSILQDLKT--FPPTIDELMETLKGDEALLVKE 260
Query: 341 LEDSSVLDEAMKWD 354
L S VL E M+WD
Sbjct: 261 LIGSMVLAELMEWD 274
>gi|242063820|ref|XP_002453199.1| hypothetical protein SORBIDRAFT_04g001570 [Sorghum bicolor]
gi|241933030|gb|EES06175.1| hypothetical protein SORBIDRAFT_04g001570 [Sorghum bicolor]
Length = 475
Score = 227 bits (579), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/338 (37%), Positives = 189/338 (55%), Gaps = 19/338 (5%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LA P Y +T+ WF+W+ A + A L+ G E+ TLI +++S+ E+ LFY
Sbjct: 87 LAIPFYEAVTQARWFKWSSIHAAAVAALLEGNGSTGESRTLISDSISQHLQSTNEVALFY 146
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C+L+ +F K D Y L + S Y+ +MI LC MG P EAE +
Sbjct: 147 CDLMAAFSSRGLKDRAMDFYTELRSMPLSGRKTYM------AMIKSLCLMGLPSEAEKTL 200
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EM G +P F++ + YG+ G L DMER++ M G R T ++ VLS Y
Sbjct: 201 REMVSLGYQPEAFQFGSVAKCYGKSGSLVDMERVITSMADAGIRFGTGAADTVLSCYSSC 260
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE 332
+ S+M+ WL+KM+ I + + YN VLNSCS++ S++Q+L+ + PLS L + L
Sbjct: 261 RDHSKMLAWLKKMRKLRIAPTTKGYNFVLNSCSSLASVVQELDPS-LPLSTTGLVKRLRS 319
Query: 333 -----EEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386
EV +V+E L SSVLD+AM+W E KL+LHG SAY ++LQW+D ++ R
Sbjct: 320 ISTPAAEVELVQELLASSSVLDKAMEWSETEVKLNLHGFSTVSAYVLMLQWVDAVKGR-- 377
Query: 387 NEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+P E++VVCG GKHS VRGE V+ + ++++ R
Sbjct: 378 ----ELPLEVSVVCGIGKHSDVRGEPKVRELAQEVLSR 411
>gi|115443851|ref|NP_001045705.1| Os02g0120000 [Oryza sativa Japonica Group]
gi|41052621|dbj|BAD08130.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|41052734|dbj|BAD07590.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535236|dbj|BAF07619.1| Os02g0120000 [Oryza sativa Japonica Group]
gi|215678701|dbj|BAG95138.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695204|dbj|BAG90395.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 496
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 213/395 (53%), Gaps = 30/395 (7%)
Query: 40 QRFLSSLALAVTRDSKAASRLISKFVAS-SPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
+R +S L VT AA R+I +VAS S + L+ D A P Y
Sbjct: 48 RRLMSELERTVT--PGAAERVIRSYVASKSERAALAALSRLLMDSDP-------FAIPFY 98
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL---GSRERELVLFYCNL 155
+T+ WF+W+ A + A L+ G EE+ +LI +++S+L S E+ LFYC+L
Sbjct: 99 EVVTQARWFKWSSIHAAAVAALLESNGSAEESRSLISDSISRLHSTSSSSEEVSLFYCDL 158
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
+ +F + D Y++L +S ++ +MI LC MG EAE + EM
Sbjct: 159 MAAFSSRGMRDRAMDFYSQLR-----ASPPLSGKKTYTAMIKSLCLMGLAGEAEAALREM 213
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G +P F++ + YG+ G + +MER+++ M G R+ T +N+VLS Y +
Sbjct: 214 ASRGHQPEAFQFGLVAKCYGKAGSMAEMERVISSMSDAGIRLGTGAANIVLSCYTSCRDH 273
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE--- 332
SRM+ WL++M+ I + + +N VLNSC T+ SM Q+L + PLS EL + L
Sbjct: 274 SRMLAWLRRMRKLRIAPTTKAFNFVLNSCPTVASMAQELGES-LPLSTAELVKKLRSASQ 332
Query: 333 --EEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEK 389
E +V+E L SSVLD+AM W E KL+LHG +AY +ILQW+D M+ R
Sbjct: 333 WPAEAELVQELLTSSSVLDKAMDWSESEVKLNLHGFSTIAAYVLILQWVDAMKAR----- 387
Query: 390 HVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+P E++VVCG GKHS VRGE V+ + ++++ R
Sbjct: 388 RALPLEVSVVCGIGKHSDVRGEPKVRELAQEVLSR 422
>gi|125537840|gb|EAY84235.1| hypothetical protein OsI_05617 [Oryza sativa Indica Group]
Length = 553
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 213/395 (53%), Gaps = 30/395 (7%)
Query: 40 QRFLSSLALAVTRDSKAASRLISKFVAS-SPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
+R +S L VT AA R+I +VAS S + L+ D A P Y
Sbjct: 48 RRLMSELERTVT--PGAAERVIRSYVASKSERAALAALSRLLMDSDP-------FAIPFY 98
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL---GSRERELVLFYCNL 155
+T+ WF+W+ A + A L+ G EE+ +LI +++S+L S E+ LFYC+L
Sbjct: 99 EVVTQARWFKWSSIHAAAVAALLESNGSAEESRSLISDSISRLHSTSSSSEEVSLFYCDL 158
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
+ +F + D Y++L +S ++ +MI LC MG EAE + EM
Sbjct: 159 MAAFSSRGMRDRAMDFYSQLR-----ASPPLSGKKTYTAMIKSLCLMGLAGEAEAALREM 213
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G +P F++ + YG+ G + +MER+++ M G R+ T +N+VLS Y +
Sbjct: 214 ASRGHQPEAFQFGLVAKCYGKAGSMAEMERVISSMSDAGIRLGTGAANIVLSCYTSCRDH 273
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE--- 332
SRM+ WL++M+ I + + +N VLNSC T+ SM Q+L + PLS EL + L
Sbjct: 274 SRMLAWLRRMRKLRIAPTTKAFNFVLNSCPTVASMAQELGES-LPLSTAELVKKLRSASQ 332
Query: 333 --EEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEK 389
E +V+E L SSVLD+AM W E KL+LHG +AY +ILQW+D M+ R
Sbjct: 333 WPAEAELVQELLTSSSVLDKAMDWSESEVKLNLHGFSTIAAYVLILQWVDAMKAR----- 387
Query: 390 HVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+P E++VVCG GKHS VRGE V+ + ++++ R
Sbjct: 388 RALPLEVSVVCGIGKHSDVRGEPKVRELAQEVLSR 422
>gi|222622061|gb|EEE56193.1| hypothetical protein OsJ_05152 [Oryza sativa Japonica Group]
Length = 496
Score = 224 bits (571), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 140/395 (35%), Positives = 211/395 (53%), Gaps = 30/395 (7%)
Query: 40 QRFLSSLALAVTRDSKAASRLISKFVAS-SPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
+R +S L VT AA R+I +VAS S + L+ D A P Y
Sbjct: 48 RRLMSELERTVT--PGAAERVIRSYVASKSERAALAALSRLLMDSDP-------FAIPFY 98
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL---GSRERELVLFYCNL 155
+T+ WF+W+ A + A L+ G EE+ +LI +++S+L S E+ LFYC+L
Sbjct: 99 EVVTQARWFKWSSIHAAAVAALLESNGSAEESRSLISDSISRLHSTSSSSEEVSLFYCDL 158
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
+ +F + D Y++L +S ++ +MI LC MG EAE + EM
Sbjct: 159 MAAFSSRGMRDRAMDFYSQLR-----ASPPLSGKKTYTAMIKSLCLMGLAGEAEAALREM 213
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G +P F++ + YG+ G + +MER+++ M G R+ T +N+VLS Y +
Sbjct: 214 ASRGHQPEAFQFGLVAKCYGKAGSMAEMERVISSMSDAGIRLGTGAANIVLSCYTSCRDH 273
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE--- 332
SRM+ WL++M+ I + + +N VLNSC T+ SM Q+L + PLS EL + L
Sbjct: 274 SRMLAWLRRMRKLRIAPTTKAFNFVLNSCPTVASMAQELGES-LPLSTAELVKKLRSASQ 332
Query: 333 --EEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEK 389
E +V+E L SSVLD+AM W E KL+LHG +AY +ILQW+D M+ R
Sbjct: 333 WPAEAELVQELLTSSSVLDKAMDWSESEVKLNLHGFSTIAAYVLILQWVDAMKAR----- 387
Query: 390 HVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+P E VVCG GKHS VRGE V+ + ++++ R
Sbjct: 388 RALPLEFPVVCGIGKHSDVRGEPKVRELAQEVLSR 422
>gi|326521138|dbj|BAJ96772.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326522727|dbj|BAJ88409.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/338 (36%), Positives = 190/338 (56%), Gaps = 16/338 (4%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LA P Y +T+ WF+W+ A + A L+ G +E+ +LI ++ +L S EL LFY
Sbjct: 91 LAVPFYEAVTQARWFKWSSIHAAAVTALLEANGSADESRSLIADSAGRLESTA-ELALFY 149
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C+L+ +F KR D YA+L + + + + +MI LC +G EAE +
Sbjct: 150 CDLMAAFSSRGLKRRAMDFYAQLRSM---PTPLAGGGKTYMAMIKSLCMLGLAAEAEEAL 206
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EM G +P F++ + YG+ G L +MER++ M G R+ T +N+VLS Y
Sbjct: 207 REMVALGYQPDAFQFGLVAKCYGKAGQLAEMERVIASMSEAGIRLGTGAANIVLSCYSAC 266
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE 332
E +M+ WL+KM+ + + + YN VLNSC T++SM ++L + PLS +L L
Sbjct: 267 REHGKMLAWLKKMRKLRVAPTTKAYNFVLNSCPTVVSMARELGPS-LPLSAAQLVRKLKS 325
Query: 333 -----EEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386
EV VV+E L SSVL++AM W E KL+LHG + SAY ++LQW+D +R
Sbjct: 326 ASPWPAEVEVVQELLAASSVLNKAMVWSETEVKLNLHGFSITSAYVLMLQWVDAVRG--- 382
Query: 387 NEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+P E++VVCG GKHS VRGE V+ + ++++ R
Sbjct: 383 --GRTLPLEVSVVCGVGKHSDVRGEPKVRELAQEVLSR 418
>gi|357144806|ref|XP_003573420.1| PREDICTED: acetyl-coenzyme A synthetase-like [Brachypodium
distachyon]
Length = 1037
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 137/398 (34%), Positives = 211/398 (53%), Gaps = 28/398 (7%)
Query: 40 QRFLSSLALAVTRDSKAASRLISKFVAS-SPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
+R +S L VT S AA R+I +V + S + L+ D LA P Y
Sbjct: 586 RRLMSELDRTVT--SGAAERVIRGYVGTKSERAALAALSRLLIDSD-------PLAIPFY 636
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+T+ WF+W+ A + A L+ G EE+ +L+ + ++L E+ LFYC+L+ +
Sbjct: 637 EAVTQARWFKWSSIHAAGVAALLEATGGAEESRSLVAGSAARLQC-PSEVALFYCDLMAA 695
Query: 159 FCKHDSKRGFDDTYARLNQ-----LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
F R D YA+L L S + + +MI LC MG EAE +
Sbjct: 696 FSSRGLNRRAMDFYAQLRAMPPPALSGSGAGGGGGGRIYMAMIKSLCLMGLAAEAEEALR 755
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM G +P F++ + YG+ G L +MER++ M G R+ T +N+VLS Y
Sbjct: 756 EMVSLGHKPDAFQFGLVAKCYGKAGQLAEMERVIASMSDAGIRLGTGAANIVLSCYSACR 815
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN-- 331
+ +M++WL++M+ I + + YN VLNSC+T++ M ++L + PLS +L + L
Sbjct: 816 DHGKMLMWLKRMRKLRIAPTTKAYNFVLNSCTTVVKMARELGPS-LPLSSAQLVKKLRSG 874
Query: 332 ---EEEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNN 387
E VV+E L SSVLD+AM W E KL+LHG + SAY ++LQW+D ++
Sbjct: 875 SPWPAEADVVQELLAASSVLDKAMNWSENEVKLNLHGFSVTSAYVLMLQWVDAIKG---- 930
Query: 388 EKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
+P E++VVCG GKHS VRGE V+ + ++++ RT
Sbjct: 931 -GRALPLEVSVVCGVGKHSDVRGEPKVRELAQEVLSRT 967
>gi|194708024|gb|ACF88096.1| unknown [Zea mays]
Length = 484
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 191/344 (55%), Gaps = 22/344 (6%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLF 151
LA P Y +T+ WF+W+ A + A L+ G+ E+ +LI +++S+ L E+ LF
Sbjct: 87 LAIPFYEAVTQARWFKWSSIHAAAVAALLEANGRAGESRSLIADSVSQHLQQSTDEVALF 146
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LI +F S RG D + + S + +R+A +M+ LC +G P EAE
Sbjct: 147 YCDLIAAF----SSRGLKDRATEFHMELRSMPPLS-ERKAYAAMVKSLCLLGMPAEAEAA 201
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYG 270
+ EM +G P ++ + YGR G DMER++ M ++ G R+ ++ VLS Y
Sbjct: 202 LREMVSRGHRPEAAQFGAVARCYGRAGSPADMERVIASMADAGGIRLGAGAADAVLSCYS 261
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILEL---- 326
+ +R + WL++M+ + + + YN VLNSC ++ S++++L + PLS L
Sbjct: 262 ACRDHARTLAWLKRMRKLRVAVTAKGYNLVLNSCPSLASVVRELGP-ELPLSTAGLVGWL 320
Query: 327 ----TEVLNEEEVSVVKEL--EDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380
T EV VV+EL +SVLD AM+W E KL+LHG +AY ++LQW+D
Sbjct: 321 RSASTTPAPAAEVEVVRELLASSASVLDRAMEWSEAEAKLNLHGFSTVAAYVLVLQWVDA 380
Query: 381 MRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+R R +P E++VVCG GKHS VRGES V+ + ++++ R
Sbjct: 381 VRGR----ARALPLEVSVVCGVGKHSDVRGESRVRELAQEVLGR 420
>gi|212721438|ref|NP_001132818.1| uncharacterized protein LOC100194308 [Zea mays]
gi|194695482|gb|ACF81825.1| unknown [Zea mays]
gi|219885479|gb|ACL53114.1| unknown [Zea mays]
gi|224028511|gb|ACN33331.1| unknown [Zea mays]
gi|413935307|gb|AFW69858.1| hypothetical protein ZEAMMB73_267824 [Zea mays]
Length = 484
Score = 207 bits (528), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 121/344 (35%), Positives = 190/344 (55%), Gaps = 22/344 (6%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLF 151
LA P Y +T+ WF+W+ A + A L+ G+ E+ +LI +++S+ L E+ LF
Sbjct: 87 LAIPFYEAVTQARWFKWSSIHAAAVAALLEANGRAGESRSLIADSVSQHLQQSTDEVALF 146
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LI +F S RG D + + S + R+A +M+ LC +G P EAE
Sbjct: 147 YCDLIAAF----SSRGLKDRATEFHMELRSMPPLS-GRKAYAAMVKSLCLLGMPAEAEAA 201
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYG 270
+ EM +G P ++ + YGR G DMER++ M ++ G R+ ++ VLS Y
Sbjct: 202 LREMVSRGHRPEAAQFGAVARCYGRAGSPADMERVIASMADAGGIRLGAGAADAVLSCYS 261
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILEL---- 326
+ +R + WL++M+ + + + YN VLNSC ++ S++++L + PLS L
Sbjct: 262 ACRDHARTLAWLKRMRKLRVAVTAKGYNLVLNSCPSLASVVRELGP-ELPLSTAGLVGWL 320
Query: 327 ----TEVLNEEEVSVVKEL--EDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380
T EV VV+EL +SVLD AM+W E KL+LHG +AY ++LQW+D
Sbjct: 321 RSASTTPAPAAEVEVVRELLASSASVLDRAMEWSEAEAKLNLHGFSTVAAYVLVLQWVDA 380
Query: 381 MRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMVR 424
+R R +P E++VVCG GKHS VRGES V+ + ++++ R
Sbjct: 381 VRGR----ARALPLEVSVVCGVGKHSDVRGESRVRELAQEVLGR 420
>gi|219885173|gb|ACL52961.1| unknown [Zea mays]
gi|413935306|gb|AFW69857.1| hypothetical protein ZEAMMB73_267824 [Zea mays]
Length = 317
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 141/247 (57%), Gaps = 16/247 (6%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R+A +M+ LC +G P EAE + EM +G P ++ + YGR G DMER++
Sbjct: 12 RKAYAAMVKSLCLLGMPAEAEAALREMVSRGHRPEAAQFGAVARCYGRAGSPADMERVIA 71
Query: 249 QM-ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
M ++ G R+ ++ VLS Y + +R + WL++M+ + + + YN VLNSC ++
Sbjct: 72 SMADAGGIRLGAGAADAVLSCYSACRDHARTLAWLKRMRKLRVAVTAKGYNLVLNSCPSL 131
Query: 308 MSMLQDLNSNDFPLSILEL--------TEVLNEEEVSVVKEL--EDSSVLDEAMKWDSGE 357
S++++L + PLS L T EV VV+EL +SVLD AM+W E
Sbjct: 132 ASVVRELGP-ELPLSTAGLVGWLRSASTTPAPAAEVEVVRELLASSASVLDRAMEWSEAE 190
Query: 358 TKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAM 417
KL+LHG +AY ++LQW+D +R R +P E++VVCG GKHS VRGES V+ +
Sbjct: 191 AKLNLHGFSTVAAYVLVLQWVDAVRGR----ARALPLEVSVVCGVGKHSDVRGESRVREL 246
Query: 418 VKKMMVR 424
++++ R
Sbjct: 247 AQEVLGR 253
>gi|194698338|gb|ACF83253.1| unknown [Zea mays]
Length = 317
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/247 (36%), Positives = 140/247 (56%), Gaps = 16/247 (6%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R+A +M+ LC +G P EAE + EM +G P ++ + YGR G DMER++
Sbjct: 12 RKAYAAMVKSLCLLGMPAEAEAALREMVSRGHRPEAAQFGAVARCYGRAGSPADMERVIA 71
Query: 249 QM-ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
M ++ G R+ ++ VLS Y + +R + WL++M+ + + + YN VLNSC ++
Sbjct: 72 SMADAGGIRLGAGAADAVLSCYSACRDHARTLAWLKRMRKLRVAVTAKGYNLVLNSCPSL 131
Query: 308 MSMLQDLNSNDFPLSILEL--------TEVLNEEEVSVVKEL--EDSSVLDEAMKWDSGE 357
S++++L + PLS L T EV VV+EL +SVLD AM+W E
Sbjct: 132 ASVVRELGP-ELPLSTAGLVGWLRSASTTPAPAAEVEVVRELLASSASVLDRAMEWSEAE 190
Query: 358 TKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAM 417
KL+LHG +AY ++LQW+D +R R +P E +VVCG GKHS VRGES V+ +
Sbjct: 191 AKLNLHGFSTVAAYVLVLQWVDAVRGR----ARALPLEGSVVCGVGKHSDVRGESRVREL 246
Query: 418 VKKMMVR 424
++++ R
Sbjct: 247 AQEVLGR 253
>gi|168066246|ref|XP_001785052.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663369|gb|EDQ50136.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 572
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 95/334 (28%), Positives = 177/334 (52%), Gaps = 14/334 (4%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
L P+Y + +E+ ++W+ L A I+A + K Q + +LE L ++R
Sbjct: 122 LVIPVYEAVRKETKYKWDANLHARIVAMVAKDEQLLANSSQLLEPRETLNLKQR--AQLE 179
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C LI+ + +++ R+ +L + S + ++++ G +P EAE ++
Sbjct: 180 CALIECYIIQGLMNQAHESFLRICELPLAKS----RSLGYRALVRGYSAAEKPVEAEKML 235
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
E ++ G PS +YK ++ GYG+L +L DMERI N ++ G ++DT N+++++Y
Sbjct: 236 LEWKLTGYLPSVDDYKALLLGYGKLEMLSDMERITNDLQMIGMKLDTAGFNIMITAYCYA 295
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM-LQDLNSNDFPLSILE--LTEV 329
L RMV Q+M ++G+ S+ ++N++ +C + + L+ + P ++ E
Sbjct: 296 GRLERMVEIFQQMDEAGVRPSLVSWNALTKACRALAGVGLEVSGAMASPQTLFSRLYDED 355
Query: 330 LNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEK 389
+ EE+S+V+ L + E + + +LDLH M LG+A ++ W+D +R+RF
Sbjct: 356 ASSEELSIVQLLLARGLPPECVVFSPDVWQLDLHNMSLGTASIMLPLWLDSLRDRF-QLN 414
Query: 390 HVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMV 423
H P E+ ++ G GKHS ++ VKA V+KM+V
Sbjct: 415 HKPPLEVKLITGWGKHS----KADVKAPVRKMIV 444
>gi|414585284|tpg|DAA35855.1| TPA: hypothetical protein ZEAMMB73_235118 [Zea mays]
Length = 328
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 134/252 (53%), Gaps = 28/252 (11%)
Query: 125 GQREEAETLILETLSK-LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
G+ E+ +LI +++S+ L E+ LFYC+L+ +F S RG D + + S
Sbjct: 40 GRAGESRSLIADSISQHLQQSTDEVALFYCDLLAAF----SSRGLKDRATEFHLELRSMP 95
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ R+A +M+ LC +G P EAE + EM +G P ++ + YGR+G DM
Sbjct: 96 PLS-GRKAYAAMVKSLCLLGMPAEAETALSEMVSRGHRPEAAQFGAVARCYGRVGSPADM 154
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ER++ M ++ VLS Y + +R + WL++M+ + + + YN VLNS
Sbjct: 155 ERVIASM-----------ADAVLSCYSACH--ARTLAWLKRMRKLRVAVTAKGYNLVLNS 201
Query: 304 CSTIMSMLQDLNSNDFPLSILELTEVLN------EEEVSVVKEL--EDSSVLDEAMKWDS 355
C ++ S++++L + PLS + L L + EV VV+EL +SVLD AM+W
Sbjct: 202 CPSLASVVRELGP-ELPLSTVGLVGRLRSASTTPKAEVEVVRELLASSASVLDRAMEWSE 260
Query: 356 GETKLDLHGMHL 367
E KL+LHG +L
Sbjct: 261 AEAKLNLHGCNL 272
>gi|302816960|ref|XP_002990157.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
gi|300142012|gb|EFJ08717.1| hypothetical protein SELMODRAFT_131102 [Selaginella moellendorffii]
Length = 760
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 99/375 (26%), Positives = 161/375 (42%), Gaps = 64/375 (17%)
Query: 100 RITEESWFQWNPKLVAEIIAFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
R EE+ F K + A LD KQG+ EA +L LE + + G+ +L Y LI
Sbjct: 355 RAMEEAGFA---KDIVTYNALLDSYGKQGKFREAMSL-LEEMKQRGASPN--ILTYSALI 408
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
D++CKH GF L Q V + + +++ G C+ G P EA L+EEM
Sbjct: 409 DAYCKH----GFHRDAMALFQDVKKAG-LQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 463
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLL--EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
G+ P+ Y ++ YGR L+ ++ ++ + T + + S D +
Sbjct: 464 DNGIRPNVITYNSLLDAYGRQCLMVRKNFPKLRFFLLPRVTMLLKPSVDYDQQSLVDPKQ 523
Query: 275 LSRMVLW----LQKMKDSGIPFSVRTYNSVLNSCS------------------------- 305
+VL ++M +G+ +V T++S+LN+CS
Sbjct: 524 KQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASSLLEAMRVFDGRVYGV 583
Query: 306 -----------------TIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLD 348
T+ + L L N LT+VL E + K +D V D
Sbjct: 584 THGLLMGFRIRVWRDAETLFNELTTLGHNTAVAFYNALTDVLWHFEQA--KAAKDRHVWD 641
Query: 349 EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTV 408
+A + LDLH M +GSA ++ W+ +R + V+P ++++ G GKHS V
Sbjct: 642 KAWWHSEQQFFLDLHFMSVGSAQAMLHLWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKV 701
Query: 409 RGESSVKAMVKKMMV 423
GES+VK V+ ++
Sbjct: 702 PGESAVKRAVEAHLL 716
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 150/341 (43%), Gaps = 38/341 (11%)
Query: 44 SSLALAVTRDSKAASRLISKF----VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM 99
SSL A R K A + + F V P + NA+ S +P A ++
Sbjct: 160 SSLICAYGRSGKLA-KAVEIFEAMKVVCKPNLVVYNAVIDACSKGGDYP----TALRIFR 214
Query: 100 RITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
+ E+ +P + +I+ + + EE + + E + +R+ + Y LI
Sbjct: 215 EMLEQGM---SPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD---VTYNTLIA 268
Query: 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
++C+ G A L + + SS + +MI G ++G HEA L +EMR
Sbjct: 269 TYCRG----GQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRN 324
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ +EP G Y ++ + RLG ++ I ME G D V N +L SYG +
Sbjct: 325 QNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFRE 384
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIMSMLQDLNSNDFPLSILELTEVLN 331
+ L++MK G ++ TY++++++ C M++ QD+ ++ + +++
Sbjct: 385 AMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 444
Query: 332 --------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
+E +++++E+ D+ + + ++S LD +G
Sbjct: 445 GCCKNGSPDEALALLEEMADNGIRPNVITYNS---LLDAYG 482
>gi|302821741|ref|XP_002992532.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
gi|300139734|gb|EFJ06470.1| hypothetical protein SELMODRAFT_135367 [Selaginella moellendorffii]
Length = 759
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 98/375 (26%), Positives = 159/375 (42%), Gaps = 64/375 (17%)
Query: 100 RITEESWFQWNPKLVAEIIAFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
R EE+ F K + A LD KQG+ EA +L LE + + G+ +L Y LI
Sbjct: 354 RAMEEAGFA---KDIVTYNALLDSYGKQGKFREAMSL-LEEMKQRGASPN--ILTYSALI 407
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
D++CKH GF L Q V + + +++ G C+ G P EA L+EEM
Sbjct: 408 DAYCKH----GFHRDAMALFQDVKKAG-LQPDVVLYSTLVDGCCKNGSPDEALALLEEMA 462
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLL--EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
G+ P+ Y ++ YGR L+ + ++ + T + S D +
Sbjct: 463 DNGIRPNVITYNSLLDAYGRQCLMVRKTFPKLRFFLLPRVTMLLKPSMQDDQQSLVDPKQ 522
Query: 275 LSRMVLW----LQKMKDSGIPFSVRTYNSVLNSCS------------------------- 305
+VL ++M +G+ +V T++S+LN+CS
Sbjct: 523 KQALVLAAARVFREMAKNGVKPNVVTFSSILNACSHCASVEDASNLLEAMRVFDGRVYGV 582
Query: 306 -----------------TIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLD 348
T+ + L L N LT+VL E + + +D V D
Sbjct: 583 THGLLMGFRIRVWRDAETLFNELTTLGHNTAVAFYNALTDVLWHFEQA--QAAKDRHVWD 640
Query: 349 EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTV 408
+A + LDLH M +GSA ++ W+ +R + V+P ++++ G GKHS V
Sbjct: 641 KAWWHSEQQFFLDLHFMSVGSAQAMLHLWLLYIRKFLCQRRSVLPKYMSILTGWGKHSKV 700
Query: 409 RGESSVKAMVKKMMV 423
GES+VK V+ ++
Sbjct: 701 PGESAVKRAVEAHLL 715
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 77/341 (22%), Positives = 150/341 (43%), Gaps = 38/341 (11%)
Query: 44 SSLALAVTRDSKAASRLISKF----VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM 99
SSL A R K A + + F V P + NA+ S +P A ++
Sbjct: 159 SSLICAYGRSGKLA-KAVEIFEAMKVVCKPNLVVYNAVIDACSKGGDYP----TALRIFR 213
Query: 100 RITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
+ E+ +P + +I+ + + EE + + E + +R+ + Y LI
Sbjct: 214 EMLEQGM---SPDRITFNTLISAAGRANRWEECDRIFAEMEERGIARDD---VTYNTLIA 267
Query: 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
++C+ G A L + + SS + +MI G ++G HEA L +EMR
Sbjct: 268 TYCRG----GQMHLGAALMETMAKSSGIEPSVITYSTMIDGYAKLGLAHEAIALFQEMRN 323
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ +EP G Y ++ + RLG ++ I ME G D V N +L SYG +
Sbjct: 324 QNVEPDGICYNTMVDIHARLGNFDEAHSIRRAMEEAGFAKDIVTYNALLDSYGKQGKFRE 383
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIMSMLQDLNSNDFPLSILELTEVLN 331
+ L++MK G ++ TY++++++ C M++ QD+ ++ + +++
Sbjct: 384 AMSLLEEMKQRGASPNILTYSALIDAYCKHGFHRDAMALFQDVKKAGLQPDVVLYSTLVD 443
Query: 332 --------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
+E +++++E+ D+ + + ++S LD +G
Sbjct: 444 GCCKNGSPDEALALLEEMADNGIRPNVITYNS---LLDAYG 481
>gi|297832304|ref|XP_002884034.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329874|gb|EFH60293.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 56
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/56 (71%), Positives = 47/56 (83%)
Query: 365 MHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKK 420
MHL S+Y I+LQWM+E+R RF+ EK VIPAEI VV GSGKHS VRGES VK++VKK
Sbjct: 1 MHLSSSYLILLQWMNEIRLRFSEEKCVIPAEIVVVSGSGKHSNVRGESLVKSLVKK 56
>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Cucumis sativus]
Length = 611
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
++ L +G+ EA+ L+ E LS S + V+ Y LI+ +CK +++ FD+
Sbjct: 344 LVNGLCNEGKLNEAKVLLDEMLS---SNLKPNVITYNALINGYCKKKLLEEARELFDNI- 399
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ +++ G C+ G+ EA L + M KG P+ Y C+I
Sbjct: 400 --------GKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIV 451
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ R G +E+++ ++N+M+ G + DTV N+++S++ + E + + +M D G+
Sbjct: 452 GFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKP 511
Query: 293 SVRTYNSVLNS 303
S TYN +LN
Sbjct: 512 SHLTYNILLNG 522
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 99/192 (51%), Gaps = 10/192 (5%)
Query: 117 IIAFLDKQGQREEAETLI-LETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYAR 174
IIA + E ++T++ LE + G +L + CN L+ + K + G + Y
Sbjct: 161 IIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYKE 220
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ + S + + ++I+GLC++G+ ++A +++++M+V G P+ Y +I GY
Sbjct: 221 MIRRKISPNLI-----TFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGY 275
Query: 235 ---GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
GR+G + + I+ +M + ++V N+++ + LS + ++M+ G+
Sbjct: 276 CKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLK 335
Query: 292 FSVRTYNSVLNS 303
+V TYNS++N
Sbjct: 336 PTVVTYNSLVNG 347
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 5/147 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LID FCK ++ + + S + S+++GLC G+ +EA+ L++E
Sbjct: 309 LIDGFCKDENLSAALKVFEEM-----QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDE 363
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M L+P+ Y +I GY + LLE+ + + + G + + N +L Y +
Sbjct: 364 MLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGK 423
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ L + M + G + TYN ++
Sbjct: 424 MEEAFLLQKVMLEKGFLPNASTYNCLI 450
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS CE +P +A LI+EM KGL+PS Y ++ GY G L + QME +G
Sbjct: 484 LISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEG 543
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ V N+++ Y +L L +M + G+ + TY
Sbjct: 544 RWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTY 586
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK A L ++V + V +I G C+ A
Sbjct: 265 VVTYNTLIDGYCKMGRVGKMYKADAILKEMV--ENKVSPNSVTFNVLIDGFCKDENLSAA 322
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ EEM+ +GL+P+ Y ++ G G L + + ++++M S + + + N +++
Sbjct: 323 LKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALING 382
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y L + G+ +V T+N++L+
Sbjct: 383 YCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHG 417
>gi|297821008|ref|XP_002878387.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297324225|gb|EFH54646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 766
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 83/158 (52%), Gaps = 8/158 (5%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI++ CK R D+ Q+ + + + ++I GLC++G+ EAE
Sbjct: 335 LINTLCK---SRRVDEALQVFEQMCGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391
Query: 211 LIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ M+++ P+ Y C+I GY R G LE + +V++M+ DG + D V N ++
Sbjct: 392 LLVRMKMEERCVPNTVTYNCLIDGYCRAGKLETAKEVVSRMKEDGIKPDVVTVNTIVGGM 451
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
H+ L+ VL+ M+ G+ +V TY +++++C ++
Sbjct: 452 CRHHGLNMAVLFFMDMEKEGVKGNVVTYMTLIHACCSL 489
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 62/114 (54%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E++R G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLREGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ + +V TY +V+ + CS
Sbjct: 576 GMKPDSITYNTLISFFGKHKDFESVERMMEQMREDELDPTVATYGAVIEAYCSV 629
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C + +A + ++M G P Y +I G ++ D R+V ++
Sbjct: 481 TLIHACCSLSNIEKAMHWFDKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLREG 540
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + NM++ + D N ++ L M+ G+ TYN++++
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLIS 589
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G++P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEGMKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
D V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDELDPTVATYGAVIEAYCSVGELGEA---LKLFKDMGLRSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 90/187 (48%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EA+ ++ E + K + V+ Y LID +CK + + + N
Sbjct: 398 LINGLCRAGELKEADRVLQEMVDKGLDVD---VVTYTVLIDGYCK---RGNMVEAFRVHN 451
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V ++ GLC+ G A L+ EM KGLE + + Y +I G +
Sbjct: 452 EMVGRRVAPNV--VTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCK 509
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE RI+ +ME+ G R D ++ + E R LQ+M D GI S+ T
Sbjct: 510 FGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIAT 569
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 570 YNVLMNG 576
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 16/201 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHD-- 163
+ N + +IA L +GQ +A +LE ++ G +V + +I FC K D
Sbjct: 318 LESNATVYTSVIALLCNKGQVSDA-LRVLEDMTMHGVALDAVV--FTTVISGFCSKGDLA 374
Query: 164 -SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
++R F++ R + R ++I+GLC G+ EA+ +++EM KGL+
Sbjct: 375 AARRLFEEMQKR---------GLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDV 425
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I GY + G + + R+ N+M + V + ++ L
Sbjct: 426 DVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELL 485
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
+M + G+ +V TYNS++N
Sbjct: 486 HEMCNKGLELNVYTYNSLING 506
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+M+ G C G+ A L++EM KGLE + Y +I G + D R++ M
Sbjct: 292 TMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLCNKGQVSDALRVLEDMTMH 351
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V V+S + +L+ ++M+ G+ T+ +++N
Sbjct: 352 GVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRVTHTALING 401
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 10/179 (5%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLF-YCNLIDSFCKHDSKRGFDDTYARLNQLV 179
L KQG A L+ E +K EL ++ Y +LI+ CK + + +
Sbjct: 472 LCKQGDVRAANELLHEMCNK----GLELNVYTYNSLINGLCKFGNLEQAMRIMTEM-EAA 526
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ VY ++I LC+ G+ A N+++EM KG++PS Y ++ G+ G
Sbjct: 527 GHRTDVYT----YTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGR 582
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+E ++++ M R + V N ++ Y + + M + + TYN
Sbjct: 583 VEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYN 641
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 78/185 (42%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G E+A ++ E + G R V Y LID+ CK FD + L
Sbjct: 503 LINGLCKFGNLEQAMRIMTE-MEAAGHRTD--VYTYTTLIDTLCKSGE---FDRAHNMLQ 556
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++++ + +++G C G+ + L+E M K + P+ Y ++ Y
Sbjct: 557 EMLDKGIKPSI--ATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCI 614
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ I M S + N+++ + + + + Q+M + G+ + +
Sbjct: 615 DKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASS 674
Query: 297 YNSVL 301
Y++++
Sbjct: 675 YSALI 679
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 112 KLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
K+V + + + L + G+ EA L E LSK G + E+ Y LID +CK
Sbjct: 387 KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSK-GLKPDEVT--YTALIDGYCKAGEM 443
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ + ++ NQ+V + V +++ GLC+ G+ A L+ EM KGL+P+
Sbjct: 444 K---EAFSLHNQMVEKGLTPNV--VTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVC 498
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I G ++G +E +++ +M+ G DT+ ++ +Y E+++ L+ M
Sbjct: 499 TYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIM 558
Query: 286 KDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
D G+ ++ T+N ++N + ML+D
Sbjct: 559 LDKGLQPTIVTFNVLMNG-FCMSGMLED 585
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 30/185 (16%)
Query: 149 VLFYCNLIDSFCK-----------HD-SKRGFDDTYARLNQLVNSSSSVYVKRQALK--- 193
V+ Y L+D CK H+ S++G N L+N V QA+K
Sbjct: 462 VVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLME 521
Query: 194 ---------------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+++ C+MG+ +A L+ M KGL+P+ + ++ G+ G
Sbjct: 522 EMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSG 581
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+LED ER++ M G + N ++ Y N + + + M G+ TYN
Sbjct: 582 MLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYN 641
Query: 299 SVLNS 303
++
Sbjct: 642 ILIKG 646
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C++ Q + L+EE++ KGL+P+ + Y II + G + + E+++ M++
Sbjct: 293 IVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR 352
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V ++S +G +S +MK I TY S+++
Sbjct: 353 IFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHG 401
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 58/128 (45%), Gaps = 6/128 (4%)
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
NQ + + VY ++ISG + G L +EM+ K + P Y +I+G
Sbjct: 350 NQRIFPDNVVYT------TLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLC 403
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G + + ++ ++M S G + D V ++ Y E+ +M + G+ +V
Sbjct: 404 QAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVV 463
Query: 296 TYNSVLNS 303
TY ++++
Sbjct: 464 TYTALVDG 471
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 73.2 bits (178), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E L G R ++V + C LID CK + D + R+ + S S
Sbjct: 172 VFEQLVARGFRP-DVVTYSC-LIDGLCKEGRLKEAIDLFGRMIK----SGSCMPNTVTYN 225
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C MG+ EA NL+E M G P Y ++ G+ +L L+D ++NQM
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V ++ N LS V L +M+ +V TYN++L+
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID CK D+ A L+++ V S+ISGLC+ + EA
Sbjct: 81 VVTYTVLIDGLCKGGR---VDEAVALLSKMRKKCVPTAV---TYNSLISGLCKAERASEA 134
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L+EEM G P F Y +I G+ + +D R+ Q+ + G R D V + ++
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194
Query: 269 YGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSVLNSCSTIMSMLQDLN 315
L + +M SG +P +V TYNS+++ + M + +N
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMN 242
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
NS S+ +V S+I GLC++ + +A + +M KG P + Y +I+
Sbjct: 5 NSCSADFV---TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
L + + + +M + + V +++ + V L KM+ +P +V TYNS
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNS 120
Query: 300 VLNS 303
+++
Sbjct: 121 LISG 124
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 109 WNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P +V +I L K+G+ +EA L + K GS V Y +LI FC+
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVT-YNSLISGFCRMGK-- 236
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ L ++ + SS V ++++G C++ + +A +L+ +M KGL P
Sbjct: 237 -MDEAMNLLERMAETGSSPDV--VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G R L D I+ +M N +L Y N+L ++ +
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353
Query: 287 DSGIPFSVRTYN 298
D P +V ++N
Sbjct: 354 DC--PPNVVSFN 363
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E L G R ++V + C LID CK + D + R+ + S S
Sbjct: 172 VFEQLVARGFRP-DVVTYSC-LIDGLCKEGRLKEAIDLFGRMIK----SGSCMPNTVTYN 225
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C MG+ EA NL+E M G P Y ++ G+ +L L+D ++NQM
Sbjct: 226 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 285
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V ++ N LS V L +M+ +V TYN++L+
Sbjct: 286 GLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 335
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 9/169 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID CK D+ A L+++ V S+ISGLC+ + EA
Sbjct: 81 VVTYTVLIDGLCKGGR---VDEAVALLSKMRKKCVPTAV---TYNSLISGLCKAERASEA 134
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L+EEM G P F Y +I G+ + +D R+ Q+ + G R D V + ++
Sbjct: 135 YDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDG 194
Query: 269 YGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSVLNSCSTIMSMLQDLN 315
L + +M SG +P +V TYNS+++ + M + +N
Sbjct: 195 LCKEGRLKEAIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMDEAMN 242
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
NS S+ +V S+I GLC++ + +A + +M KG P + Y +I+
Sbjct: 5 NSCSADFV---TYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENR 61
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
L + + + +M + + V +++ + V L KM+ +P +V TYNS
Sbjct: 62 LHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAV-TYNS 120
Query: 300 VLNS 303
+++
Sbjct: 121 LISG 124
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 11/192 (5%)
Query: 109 WNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P +V +I L K+G+ +EA L + K GS V Y +LI FC+
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVT-YNSLISGFCRMGK-- 236
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ L ++ + SS V ++++G C++ + +A +L+ +M KGL P
Sbjct: 237 -MDEAMNLLERMAETGSSPDV--VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVT 293
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G R L D I+ +M N +L Y N+L ++ +
Sbjct: 294 FTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEM 353
Query: 287 DSGIPFSVRTYN 298
D P +V ++N
Sbjct: 354 DC--PPNVVSFN 363
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 170 DTYARLNQLVNSSSSVYVKRQ------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D Y R NQL + + + + MI GLC++ + EA L+EE R + P
Sbjct: 334 DGYCRANQLEEARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPD 393
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G R +++ R+ +M E G +++ + +++ + L R ++
Sbjct: 394 VVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRARGYI 453
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
+K G ++ TYN ++++
Sbjct: 454 EK----GCVPNIGTYNLLIDA 470
>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 859
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 81/332 (24%), Positives = 137/332 (41%), Gaps = 59/332 (17%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR--------FLSSLALAVTRDSKAASRLISKF--VA 66
CCR R R L ARL + G R FL L A R +A L+ + +
Sbjct: 166 CCRAR--RPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHA-KRTDEAVDVLLHRMSDLG 222
Query: 67 SSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQ 124
P I+ N + L D+ S A + R+ +E + +P +V+ +I KQ
Sbjct: 223 CVPNAISYNTVIKSLCGDSR----SQEALDMVQRMAKEGG-RCSPDVVSFNTVIHGFFKQ 277
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--- 181
G+ +A LI E + K E ++V Y +++D+ CK R D L Q+V+
Sbjct: 278 GEVSKACNLINEMVQK--GVEPDVVT-YNSIVDALCK---ARAMDKAELVLRQMVDKGVE 331
Query: 182 -------------SSSVYVKRQA-----------------LKSMISGLCEMGQPHEAENL 211
S S + K A S +S LC+ G+ +AE +
Sbjct: 332 PDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEI 391
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG P Y +++GY G DM + + M G + C N+++S++
Sbjct: 392 FQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAK 451
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L +M+ G+ V TY++++++
Sbjct: 452 RGMMDEAMLVFTEMQGQGVRPDVVTYSTLISA 483
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 13/214 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
G +A+ L+ E +SK R ++F+ ++I S C D + + + + +
Sbjct: 522 HGDLVKAKELVSEMMSK--GIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPT 579
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S+I G C +G+ +A +++ M G+EP Y ++ GY + G ++D
Sbjct: 580 IV-----TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDG 634
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M + TV ++VL S +M DSG + TY +L
Sbjct: 635 LILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 694
Query: 304 -CST-----IMSMLQDLNSNDFPLSILELTEVLN 331
C +++ L + D I L V+N
Sbjct: 695 LCRNDLTDEAITLFHKLGAMDCKFDITILNTVIN 728
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 172 YARLNQLVNSSS--SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+A +N L +S + + +IS + G EA + EM+ +G+ P Y
Sbjct: 420 FADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYST 479
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I + R+G L D +QM S G +TV + ++ + H +L + + +M G
Sbjct: 480 LISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKG 539
Query: 290 IPF-SVRTYNSVLNS 303
IP ++ ++S+++S
Sbjct: 540 IPRPNIVFFSSIIHS 554
>gi|168016406|ref|XP_001760740.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688100|gb|EDQ74479.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 466
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 64/115 (55%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+ A +MI G C+ G +A+ L EM +G+EP+ Y +I+GYG+ GL ++E +++
Sbjct: 191 KYAYTTMIKGCCDAGLYDQAKKLFNEMMREGVEPTIVTYNTLIFGYGKAGLFAEIEYLLS 250
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME++G DT+ N ++ +G HN + M + + G+ T NS++ +
Sbjct: 251 LMEANGITPDTITWNTLIRVFGLHNRIPEMEQAYEGLLAQGLMADEVTLNSLIGT 305
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E E E + +GL +I YGR GL ME + + M + TV N+++
Sbjct: 279 EMEQAYEGLLAQGLMADEVTLNSLIGTYGRAGLYGKMECVTDFMRRYSYPMTTVTYNIII 338
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
YG ++ +M ++MK G+ + T++S+L++
Sbjct: 339 EIYGKARKIEQMDTAFKRMKAQGLKPNCITFSSILSA 375
>gi|388518405|gb|AFK47264.1| unknown [Lotus japonicus]
Length = 414
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 115/279 (41%), Gaps = 22/279 (7%)
Query: 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFI-ALNALSHLLSPDTTH-----P 88
+T + +S L +T+ KA R I F A LNA ++ P
Sbjct: 85 ITHEQNEAISKLPFKMTKRCKALMRQIICFSAEKGNVSDLLNAWVKIMKPIRAEWLSVLK 144
Query: 89 RLSSLAFPLYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR 144
L ++ PLY+ + E E F+ N + II + K Q EEAE IL + + G
Sbjct: 145 ELETMEHPLYLEVAEHALLEESFEVNIRDYTNIIHYCGKHNQLEEAEN-ILTAMKQRG-- 201
Query: 145 ERELVLFYCN--LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
F C+ ++ + SK G D + + KR + SMI+
Sbjct: 202 ------FICDQVILTTMVHIYSKAGHLDRAEEYFEEIRLLGEPLDKR-SYGSMITAYIRA 254
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P E+L+EEM + + YK ++ Y R+G E +R+ + ++ G D
Sbjct: 255 GMPERGESLLEEMDAREIYAGSEVYKALLRAYSRIGNAEGAQRVFDAIQLAGIIPDDKIC 314
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+V +YG + + + + MK +GI + R SVL
Sbjct: 315 GLVTKAYGMAGQSEKARIAFENMKRAGIEPTDRCIGSVL 353
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 108/221 (48%), Gaps = 16/221 (7%)
Query: 90 LSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERE 147
L AF ++ +I + + NP + +I L +GQ +A + L LG + +
Sbjct: 137 LIPFAFSVFAKILKMGY---NPNTITFTTLIKGLCLKGQIHQALNF-HDKLVALGFQFNQ 192
Query: 148 LVLFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
+ Y LID CK R D R++ +LV + +Y ++I G+C+ +
Sbjct: 193 IS--YGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMY------STIIDGMCKDKHVN 244
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A +L EM KG+ P+ Y +I G+ +G L+D + N+M S+ + D N+++
Sbjct: 245 DAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILV 304
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++S + + +M D G P ++ TY+S+L++ C T
Sbjct: 305 DVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKT 345
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 5/110 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +++D+ CK D A L +L + +I GLC G+ +A
Sbjct: 332 IVTYSSILDALCK---THRVDKAVALLTKL--KDQGIRPNMHTYTILIDGLCTSGKLEDA 386
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
N+ E++ VKG + + Y + YG+ + GL ++ ++++ME +G D
Sbjct: 387 RNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPD 436
>gi|297736801|emb|CBI26002.3| unnamed protein product [Vitis vinifera]
Length = 469
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 143/322 (44%), Gaps = 32/322 (9%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++Q +++ L K GQ A L +T+ + G Y
Sbjct: 127 ALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVEEGCEP--TTELYT 183
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ S+C+ + D+ ++ LNQ L V+ LK+ + + + E+
Sbjct: 184 ALLASYCRSNL---IDEAFSILNQMKTLPRCQPDVFTYSTLLKACV----DASRFELVES 236
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L EEM V+ + P+ ++ GYG+ G ++ME++++ M ES ++ D N +LS +
Sbjct: 237 LYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLF 296
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CSTIMSMLQDLNSNDFP 320
G+ ++ M W +K ++ GI RT+N ++ + S++M ++ L FP
Sbjct: 297 GNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQ---FP 353
Query: 321 LSILELTEVLNE-EEVSVVKELEDS--SVLDEAMKWDSGETKLDLHGMHLGSAYFIILQW 377
+ V+ +V K +E + + E MK D+ + G + + F +
Sbjct: 354 WTTSTYNNVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRG-YANAGLFHKAED 412
Query: 378 MDEMRNRFN--NEKHVIPAEIT 397
+ EM FN +KH P T
Sbjct: 413 LIEMERVFNRMKDKHCQPDSTT 434
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE------DMERIV 247
++I ++G E ++MR +G++ + C+I GY GL +MER+
Sbjct: 361 NVIEAFSDVGDAKNMEYTFDQMRAEGMKADTKTFCCLIRGYANAGLFHKAEDLIEMERVF 420
Query: 248 NQMESDGTRVDTVCSNMVLSSY 269
N+M+ + D+ ++++ +Y
Sbjct: 421 NRMKDKHCQPDSTTYSIMVEAY 442
>gi|15241779|ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9502152|gb|AAF88005.1| similar to a large family of Arabidopsis thaliana salt inducible
protein-like proteins; contains similarity to Pfam
family PF01535 (Domain of unknown function),
score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
gi|332006410|gb|AED93793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 727
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI++ CK R D+ Q+ + + + ++I GLC++G+ EAE
Sbjct: 335 LINTLCK---SRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391
Query: 211 LIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ M+++ P+ Y C+I GY R G LE + +V++M+ D + + V N ++
Sbjct: 392 LLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGM 451
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 452 CRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C + +A E+M G P Y +I G ++ D R+V +++
Sbjct: 481 TLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + NM++ + D N ++ L M+ G TYN++++
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 91/179 (50%), Gaps = 8/179 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ +EA+ ++ T+ K + V+ Y +L+D +C D + + +S
Sbjct: 292 KEGKVKEAKMMLGVTMKKDIILD---VVTYNSLMDGYCLVKEINKAKDIFDSM-----AS 343
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ +MI+GLC++ EA NL EEMR + + P+ Y +I G G+LG +
Sbjct: 344 RGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISC 403
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++V++M G + + N +L + ++ + + + L +KD GI + TY ++
Sbjct: 404 VLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLI 462
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+ Y +ID+ CK + +D + +Q+V + + S+I G C MGQ EA
Sbjct: 211 VMYNMIIDNMCK---AKLVNDAFDLYSQMV--AKRISPDDFTCNSLIYGFCIMGQLKEAV 265
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ +M ++ + P + + ++ + + G +++ + ++ +D V N ++ Y
Sbjct: 266 GLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGY 325
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E+++ M G+ +V++Y +++N I
Sbjct: 326 CLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKI 363
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 51/108 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L+ ++ +G+ P + Y +I G + G LED +++ +
Sbjct: 425 SILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVK 484
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D +++ + + L KM+D+G + +TY V+
Sbjct: 485 GYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVI 532
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +++D+ CK+ D A L L + +I GLC+ G+ +A
Sbjct: 420 IITYNSILDALCKN---HHVDKAIALLTNL--KDQGIRPDMYTYTVLIKGLCQSGKLEDA 474
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ + E++ VKG + Y +I G+ GL + ++++ME +G
Sbjct: 475 QKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNG 520
>gi|22327132|ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g28460
gi|9502149|gb|AAF88002.1| contains similarity to Pfam family PF01535 (Domain of unknown
function), score=340.5, E=1.9e-98, N=2 [Arabidopsis
thaliana]
gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120 [Arabidopsis thaliana]
gi|27363272|gb|AAO11555.1| At5g28460/F21B23_120 [Arabidopsis thaliana]
gi|332006418|gb|AED93801.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI++ CK R D+ Q+ + + + ++I GLC++G+ EAE
Sbjct: 335 LINTLCK---SRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391
Query: 211 LIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ M+++ P+ Y C+I GY R G LE + +V++M+ D + + V N ++
Sbjct: 392 LLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGM 451
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 452 CRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C + +A E+M G P Y +I G ++ D R+V +++
Sbjct: 481 TLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + NM++ + D N ++ L M+ G TYN++++
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>gi|168045050|ref|XP_001774992.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673739|gb|EDQ60258.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 385
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 76/135 (56%), Gaps = 6/135 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G CE G +A + +EM ++G++PS Y +I+GYG+ GL ++ER+++ ME++
Sbjct: 110 AMIKGCCEAGLYVQARKIFDEMMIEGVKPSIVTYNILIHGYGKAGLFREVERVLSTMEAN 169
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
DTV N ++ +G + ++ M + + G+ + T NS++++ T +
Sbjct: 170 NVAPDTVTWNTLIRVFGLNCKIPEMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKM 229
Query: 308 MSMLQDLNSNDFPLS 322
S+ Q + ++P++
Sbjct: 230 ESVTQYMQRYNYPMT 244
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E E E + +GL+P +I YG GL E ME + M+ + + N+++
Sbjct: 193 EMEQAYEGLLRQGLQPDMVTLNSLISAYGTAGLFEKMESVTQYMQRYNYPMTRITYNIIM 252
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+YG + +M ++MK + + T+ S+L++
Sbjct: 253 EAYGRAGMVDQMEETWKRMKAEFVKPNSSTFCSMLSA 289
>gi|224112076|ref|XP_002316075.1| predicted protein [Populus trichocarpa]
gi|222865115|gb|EEF02246.1| predicted protein [Populus trichocarpa]
Length = 434
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 104/214 (48%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++Q +++ L + GQ + A L E + + EL Y
Sbjct: 70 AIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTEL---YT 126
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ ++C+++ D+ ++ +NQ L VY LK+ + + +
Sbjct: 127 ALLAAYCRNNL---IDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDA----SRFELIDT 179
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L +EM + + P+ ++ GYGR+G+ + MER++++M ES + D N++LS +
Sbjct: 180 LYQEMDERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVF 239
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ ++ M W +K ++ GI RT+N ++ +
Sbjct: 240 GNEGQIDLMERWYEKFRNFGIEPETRTFNILIGA 273
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I ++G E ++MR + ++ + C+I GY GL + V
Sbjct: 304 NVIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKF 363
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+T N V+S+ ++L M ++MKD P RTY+ ++ +
Sbjct: 364 EIPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEA 413
>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g12100, mitochondrial; Flags: Precursor
gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 816
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+S + N + ++ L K+G+ E+AE ++ ++K G E++ Y +ID +C+
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVI--YNTMIDGYCRKG 403
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
G AR+ + A +I CE+G+ AE + +M++KG+ PS
Sbjct: 404 DLVG-----ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPS 458
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GYGR + I+ +ME +GT + V +++ ++L + +
Sbjct: 459 VETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKR 518
Query: 284 KMKDSGIPFSVRTYNSVLNSCST 306
M+D G+ VR YN +++ C +
Sbjct: 519 DMEDRGVSPKVRIYNMLIDGCCS 541
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYAR--LNQLVNSSSSVYVKRQALKSMISGLCEM 202
V Y LID CK +D+++ FD+ AR L L+ ++ +I G C+
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNT-----------LIDGYCKA 262
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P ++ + E M+ +EPS + ++ G + G++ED E ++ +M+ G D
Sbjct: 263 GNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTF 322
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ Y + + + + DSG+ + T + +LN+
Sbjct: 323 SILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNA 363
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK G A++ + V K + +I G C G+ +A
Sbjct: 494 VVSYGTLINCLCK-----GSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDA 548
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM KG+E + Y +I G G L + E ++ ++ G + D N ++S
Sbjct: 549 FRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISG 608
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
YG + R + ++MK SGI +++TY+ +++ C+
Sbjct: 609 YGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCT 645
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 36/184 (19%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID C SK +D + +++ + + ++I GL G+ EA
Sbjct: 529 VRIYNMLIDGCC---SKGKIEDAFRFSKEMLKKG--IELNLVTYNTLIDGLSMTGKLSEA 583
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDMER------------IVNQ 249
E+L+ E+ KGL+P F Y +I GYG G L E+M+R +++
Sbjct: 584 EDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISL 643
Query: 250 MESDGTRV------------DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+G + D + N VL Y H ++ + ++M + I TY
Sbjct: 644 CTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTY 703
Query: 298 NSVL 301
NS++
Sbjct: 704 NSLI 707
>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
Length = 385
Score = 71.6 bits (174), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 78/170 (45%), Gaps = 6/170 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E L G R ++V + C LID CK + D + R+ + S S
Sbjct: 111 VFEQLVARGFRP-DVVTYSC-LIDGLCKEGRLKEAIDLFGRMIK----SGSCMPNTVTYN 164
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C MG+ EA NL+E M G P Y ++ G+ +L L+D ++NQM
Sbjct: 165 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 224
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V ++ N LS V L +M+ +V TYN++L+
Sbjct: 225 GLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDG 274
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 51 TRDSKAASRLISKFVASS--PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
++ S A R+ + VA P + + L L + RL A L+ R+ +
Sbjct: 102 SKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEG---RLKE-AIDLFGRMIKSGSCM 157
Query: 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
N +I+ + G+ +EA L LE +++ GS V+ Y L++ FCK
Sbjct: 158 PNTVTYNSLISGFCRMGKMDEAMNL-LERMAETGSSPD--VVTYTTLMNGFCKLAR---L 211
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
DD Y LNQ+ + V S++ GLC + +A +++ EMR K P+ + Y
Sbjct: 212 DDAYDLLNQMTRKGLTPNV--VTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYN 269
Query: 229 CIIYGYGRLGLLEDMERIV 247
I+ GY R+ LE+ + +
Sbjct: 270 TILDGYCRVNQLEEARKFM 288
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISGLC+ + EA +L+EEM G P F Y +I G+ + +D R+ Q+ +
Sbjct: 59 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 118
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSVLNSCSTIMSML 311
G R D V + ++ L + +M SG +P +V TYNS+++ + M
Sbjct: 119 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTV-TYNSLISGFCRMGKMD 177
Query: 312 QDLN 315
+ +N
Sbjct: 178 EAMN 181
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ +EA L + K GS V Y +LI FC+ D+ L
Sbjct: 130 LIDGLCKEGRLKEAIDLFGRMI-KSGSCMPNTVT-YNSLISGFCRMGK---MDEAMNLLE 184
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + SS V ++++G C++ + +A +L+ +M KGL P+ + ++ G R
Sbjct: 185 RMAETGSSPDV--VTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVVTFTSLMDGLCR 242
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
L D I+ +M N +L Y N+L ++ +++ P +V +
Sbjct: 243 ENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFM--LEEMDCPPNVVS 300
Query: 297 YN 298
+N
Sbjct: 301 FN 302
>gi|15233137|ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75183498|sp|Q9M316.1|PP292_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g61520, mitochondrial; Flags: Precursor
gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis thaliana]
gi|332646696|gb|AEE80217.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 766
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I GLC++G+ EAE L+ M+++ P+ Y C+I GY R G LE + +V++M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRM 432
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ D + + V N ++ H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ +EAE L++ KL R + Y LID +C+ + +R+
Sbjct: 376 LIDGLCKVGRLKEAEELLVRM--KLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMK 433
Query: 177 Q--------LVNSSSSVYVKRQALK----------------------SMISGLCEMGQPH 206
+ VN+ + L ++I C +
Sbjct: 434 EDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVE 493
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A E+M G P Y +I G ++ D R+V +++ G +D + NM++
Sbjct: 494 KAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLI 553
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ D N ++ L M+ G TYN++++
Sbjct: 554 GLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 71.2 bits (173), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ +EA+ +L + K G + V+ YC+L+D +C + + Q
Sbjct: 278 KEGRVKEAKN-VLAMMMKQGIKPD--VVTYCSLMDGYCLVKQVNKAKSIFNTMAQ----- 329
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ MI+G C++ + EA NL +EM K + P Y +I G + G +
Sbjct: 330 GGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISY 389
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++V++M G D + N +L + ++++ + + L KMKD GI + TY +++
Sbjct: 390 ALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILID 449
Query: 303 S-C-----STIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLD 348
C ++ +DL + +++ T ++ ++ ++++ ++ED+ +
Sbjct: 450 GLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIP 509
Query: 349 EAMKWD 354
A ++
Sbjct: 510 NAKTYE 515
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 74/155 (47%), Gaps = 9/155 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V+ Y +LID CK +YA +LV+ V + S++ LC+ Q
Sbjct: 371 VVTYNSLIDGLCKSGKI-----SYAL--KLVDEMHDRGVPHDKITYNSILDALCKNHQVD 423
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L+ +M+ +G++P + Y +I G + G L+D + I + G + +++
Sbjct: 424 KAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMI 483
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ D++ + + L KM+D+G + +TY ++
Sbjct: 484 QGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIII 518
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 92/214 (42%), Gaps = 11/214 (5%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
+ +F ++ I ++ + + N + +I L +GQ +A + + LG ++
Sbjct: 107 THFSFSVFANILKKGY-EPNAITLTTLIKGLCLKGQIHQALHF-HDKVVALGFHLNKVC- 163
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI+ CK R++ +LV + +Y ++I +C++ +EA
Sbjct: 164 -YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY------NTIIDSMCKVKLVNEAF 216
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+L EM KG+ P Y +I G+ LG L D + N+M S+ D ++++ +
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L M GI V TY S+++
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDG 310
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +++D+ CK+ D A L ++ + +I GLC+ G+ +A+N+
Sbjct: 409 YNSILDALCKNHQ---VDKAIALLTKM--KDEGIQPDMYTYTILIDGLCKGGRLKDAQNI 463
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E++ VKG + + Y +I G+ L + ++++ME +G + +++ S +
Sbjct: 464 FEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFE 523
Query: 272 HNELSRMVLWLQKMKDSGIPFS 293
+E L++M G+ F
Sbjct: 524 KDENDMAEKLLREMIARGLLFG 545
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 25/208 (12%)
Query: 111 PKLVAEIIAFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
P +VA AF+D KQG EEA + LE L K G Y +LI FCK
Sbjct: 579 PDVVA-FSAFIDGLSKQGLVEEAYNVFLEMLRK-GLIPNNFA--YNSLICGFCK------ 628
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSM------ISGLCEMGQPHEAENLIEEMRVKGLE 221
+LN+ + V R L + I GLC+ G+ A N+ +M GL
Sbjct: 629 ----CGKLNEAL-KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS 683
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P Y +I GY + + + + +VN+M + G+ D N+ + + ++R VL
Sbjct: 684 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLM 743
Query: 282 LQKMKDSGIPFSVRTYNSVLNS-CSTIM 308
L ++ +GI + TYNS+LN CS I+
Sbjct: 744 LDELVSAGIVPNTVTYNSMLNGVCSDIL 771
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 13/248 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP IA N++ S L AF Y ++ +P + ++ L G+
Sbjct: 473 SPSIIAFNSVIAAYS----QAGLEDKAFEAY-KLMVHFGLTPSPSTCSSLLMGLSINGRL 527
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA LI + + K S + + L+D F K G + + + ++
Sbjct: 528 QEATELIGQMIEKGLSVNN---MAFTVLLDKFFKRGDVVGAQSLWGEMER-----RGIFP 579
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
A + I GL + G EA N+ EM KGL P+ F Y +I G+ + G L + ++
Sbjct: 580 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 639
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
M G D +NM++ + + M +G+ + TYN+++N
Sbjct: 640 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 699
Query: 308 MSMLQDLN 315
M+ N
Sbjct: 700 FDMVNADN 707
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +I++FCK + + L ++ S +++ ++++G +M + +A
Sbjct: 336 VVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAI-----MYNTLMNGYVKMREIDQA 390
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EEMR KG+ P G + ++ G+ + G ED +R++ + G D ++ +S
Sbjct: 391 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 450
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L + +L M + G+ S+ +NSV+ + S
Sbjct: 451 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYS 487
>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+GLC+ EA L +EM +K + P+ Y +I G + G + D+ +++++ + G
Sbjct: 340 MINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRG 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
+ + N +L+ ++++ + + L KMKD GI + TY ++++ C
Sbjct: 400 QPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRLKDAQ 459
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
+ QDL +PL+I T ++N +E +S++ ++ED+ + +A+ +++
Sbjct: 460 RIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYET 514
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +IDSFCK + D Y ++++ +Y S+I G C +GQ
Sbjct: 191 RPDVIMYTAIIDSFCK---DKLVIDAYDLYSEMI--VKKIYPNVVTFNSLIYGFCIVGQL 245
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA L+ EM + + P+ + + +I G + G ++ +++ M G + V +
Sbjct: 246 KEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSL 305
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Y E+++ + G+ +V +Y+ ++N
Sbjct: 306 MDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMING 343
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 89/203 (43%), Gaps = 10/203 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ CK R ++ L+ V + ++I C+ +A +L
Sbjct: 161 YGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIM----YTAIIDSFCKDKLVIDAYDL 216
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM VK + P+ + +IYG+ +G L++ ++N+M + + N+++
Sbjct: 217 YSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCK 276
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVL- 330
E+ + L M G+ +V TY S+++ +++++N + + L V
Sbjct: 277 EGEVKKATSVLSVMIKQGVEPNVVTYTSLMDG----YFLVKEVNKAKHVFNTISLRGVTP 332
Query: 331 NEEEVSV-VKELEDSSVLDEAMK 352
N SV + L + ++DEA+K
Sbjct: 333 NVHSYSVMINGLCKNKMVDEAVK 355
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 41/247 (16%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+R+ E +P +VA +I K+G +A L E + + +LV Y +++
Sbjct: 207 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVT-YSSVV 263
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNS---------SSSVY-----------------VKRQ 190
+ CK R D A L Q+VN ++ +Y ++RQ
Sbjct: 264 HALCK---ARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ 320
Query: 191 -------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
AL +++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM
Sbjct: 321 SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDM 380
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + M DG D N+++ +Y + L + ++ +M+D G+ V TY +V+ +
Sbjct: 381 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAA 440
Query: 304 CSTIMSM 310
I M
Sbjct: 441 LCRIGKM 447
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++F+ ++I++ CK D++ FD T +N ++ + VY ++ G C +G+
Sbjct: 501 IVFFGSIINNLCKLGRVMDAQNIFDLT---VNVGLHPDAVVY------NMLMDGYCLVGK 551
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M G+EP+ Y ++ GY ++G +++ + +M G + T+ N+
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSND 318
++ + + +M +SGI + TY+ VL N C + + ++L + +
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671
Query: 319 FPLSILELTEVL 330
+ I+ L ++
Sbjct: 672 VKIDIITLNTMI 683
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 431 VVTYMTVIAALCRIGK---MDDAMEKFNQMIDQG--VVPDKYAYHCLIQGFCTHGSLLKA 485
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V NM++
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKI 584
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
++C LI FC H S + +++++N+ + + S+I+ LC++G+ +A+N
Sbjct: 469 YHC-LIQGFCTHGSLLKAKEL---ISEIMNNGMRLDI--VFFGSIINNLCKLGRVMDAQN 522
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ + GL P Y ++ GY +G +E R+ + M S G + V +++ Y
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++M GI S YN +++
Sbjct: 583 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 615
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 149/398 (37%), Gaps = 62/398 (15%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNA 76
CC R R L +L + G R D+ AS L+ F + AL+
Sbjct: 122 CCT-RAHRPELALAFFGQLLRTGLRV----------DAIIASHLLKGFCEAKRTDEALDI 170
Query: 77 LSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILE 136
L H P L + F +N L + L QG+ +A+ L L
Sbjct: 171 LLH------RTPELGCV----------PDVFSYNILLKS-----LCNQGKSGQADDL-LR 208
Query: 137 TLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196
+++ G+ V+ Y +ID F K D + + Q + S++
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-----RGIPPDLVTYSSVV 263
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
LC+ +AE + +M KG+ P + Y +IYGY G ++ R+ +M
Sbjct: 264 HALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSIL 323
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-----SCSTIMSML 311
D V N ++ S + ++ M G V +Y +LN C M+ L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383
Query: 312 QDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGM--HLGS 369
DL D + VL +K + +LD+AM + ++ HG+ H+ +
Sbjct: 384 FDLMLGDGIAPDIYTFNVL-------IKAYANCGMLDKAMIIFN---EMRDHGVKPHVVT 433
Query: 370 AYFII-----LQWMDEMRNRFNN--EKHVIPAEITVVC 400
+I + MD+ +FN ++ V+P + C
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI+G+ + + EA++L + GL P
Sbjct: 655 RCFDEAIFLFKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G D+ N V+ NE+ R +L K+
Sbjct: 713 TYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772
Query: 286 KD 287
+
Sbjct: 773 DE 774
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 56/129 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y +I R+G ++D NQM G
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQG 461
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + + S++N+ + ++
Sbjct: 462 VVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQ 521
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 522 NIFDLTVNV 530
>gi|147820978|emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
Length = 525
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++Q +++ L K GQ A L +T+ + G Y
Sbjct: 127 ALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVEEGCEP--TTELYT 183
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ S+C+ + D+ ++ LNQ L V+ LK+ + + + E+
Sbjct: 184 ALLASYCRSNL---IDEAFSILNQMKTLPRCQPDVFTYSTLLKACV----DASRFELVES 236
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L EEM V+ + P+ ++ GYG+ G ++ME++++ M ES ++ D N +LS +
Sbjct: 237 LYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLF 296
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ ++ M W +K ++ GI RT+N ++ +
Sbjct: 297 GNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330
>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 614
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 122/252 (48%), Gaps = 28/252 (11%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF--CKHDSKRGFD-DTYARLNQ 177
L K+G+ ++A +L + K G ++ Y +L+D + K ++K F +T AR
Sbjct: 284 LCKEGEMKKARN-VLAVMIKQGVDSN--IVTYNSLMDGYFLVKQENKATFVFNTMAR--- 337
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
V Q+ MI+GLC+ EA NL +EM K + P+ Y +I G +
Sbjct: 338 -----RGVTPDVQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKY 392
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G + D +VN+M + G D + + +L + ++++ + + + K+KD GI ++ TY
Sbjct: 393 GRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTY 452
Query: 298 NSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELED 343
+++ C ++ QDL + L + ++N +E +S+V ++ED
Sbjct: 453 TILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMED 512
Query: 344 SSVLDEAMKWDS 355
+ + +A+ +++
Sbjct: 513 NGCIPDAVTYET 524
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ CK R +++ L+ + V ++I LC+ A +L
Sbjct: 172 YGTLINGLCKTGETRAALQVLRKIDGLLVQPNVV-----MYNTIIDSLCKDKLVIHASDL 226
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM VK + P Y +IYG +G L++ + NQM + D N+++
Sbjct: 227 CSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCK 286
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E+ + L M G+ ++ TYNS+++
Sbjct: 287 EGEMKKARNVLAVMIKQGVDSNIVTYNSLMDG 318
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LID K+ D + +N++ N V + S++ LC+ Q +A L
Sbjct: 382 YNSLIDGLLKYGR---ISDAWDLVNEMHNRGQPADVITYS--SLLDALCKNHQVDKAITL 436
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I +++ +G++P+ + Y ++ G + G L+D + + + G +D N++++
Sbjct: 437 ITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCK 496
Query: 272 HNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ + KM+D+G IP +V TY +++ +
Sbjct: 497 EGLFDEALSLVSKMEDNGCIPDAV-TYETLVRA 528
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 68/142 (47%), Gaps = 7/142 (4%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +L+D+ CK H + +Q + + Y ++ GLC+ G+ +
Sbjct: 414 VITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYT------ILVDGLCKNGRLKD 467
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A+ + +++ +KG Y ++ G + GL ++ +V++ME +G D V ++
Sbjct: 468 AQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVR 527
Query: 268 SYGDHNELSRMVLWLQKMKDSG 289
+ ++++ + V L++M G
Sbjct: 528 ALFENDKNDKAVKLLREMIVQG 549
>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 651
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
LY+ + EE + P + +I L KQ + EA + ET+++ G R V Y LI
Sbjct: 310 LYLEM-EERGLEIPPHSYSLVIGGLCKQRKCMEAYA-VFETMNQKGCRAN--VAIYTALI 365
Query: 157 DSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
DS+ K+ S + R+ N+ + Y +++GLC+ G+ + L +
Sbjct: 366 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTY------SVLVNGLCKSGRLDDGMELFDFC 419
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
R KG+ + Y +I G G+ G +ED E + +M G D+ C N ++ + H ++
Sbjct: 420 RNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKI 479
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M++ G +V T+ +++
Sbjct: 480 DQALALFGRMEEEGCDQTVYTFTILIDG 507
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A S+I +G E + M+ G++PS + Y ++ G +E E++ M
Sbjct: 185 AANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVM 244
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ DTV N+++ Y +L + + + M+ + TY +++ +C
Sbjct: 245 DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQAC 298
>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g03560, mitochondrial; Flags: Precursor
gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana]
gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E T + E + + GS+ V Y LID + K
Sbjct: 319 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYT-VFENMIRKGSKPN--VAIYTVLIDGYAKS 375
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + R GL
Sbjct: 376 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFHTCRFDGLAI 430
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +L+
Sbjct: 491 KRMEEEEGCDQTVYTYTILLSG 512
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181
K GQ ++A +E L + +R E + Y +I + C DS G + L Q ++
Sbjct: 269 KAGQTQKA----MEKLRDMETRGHEADKITYMTMIQA-CYADSDFG---SCVALYQEMDE 320
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +E
Sbjct: 321 KG-IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVE 379
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D R++++M +G + D V ++V++ + + + + + G+ + Y+S++
Sbjct: 380 DAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 439
Query: 302 NS 303
+
Sbjct: 440 DG 441
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC--NLIDSFCKHDSKRG 167
N + +I L K G+ +EAE L E K +R+ YC LID+F KH R
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDS-----YCYNALIDAFTKH---RK 482
Query: 168 FDDTYA---RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ A R+ + +VY ++SG+ + + EA L + M KG+ P+
Sbjct: 483 VDEAIALFKRMEEEEGCDQTVYT----YTILLSGMFKEHRNEEALKLWDMMIDKGITPTA 538
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
++ + G G + +I++++ G +D C +M+
Sbjct: 539 ACFRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMI 579
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I ++G E + +M+ G+EP+ + Y ++ G ++ ER+ M
Sbjct: 189 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 248
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
ES + D V N ++ Y + + + L+ M+ G TY +++ +C
Sbjct: 249 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 302
>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Cucumis sativus]
Length = 653
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 98/208 (47%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
LY+ + EE + P + +I L KQ + EA + ET+++ G R V Y LI
Sbjct: 312 LYLEM-EERGLEIPPHSYSLVIGGLCKQRKCMEAYA-VFETMNQKGCRAN--VAIYTALI 367
Query: 157 DSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
DS+ K+ S + R+ N+ + Y +++GLC+ G+ + L +
Sbjct: 368 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTY------SVLVNGLCKSGRLDDGMELFDFC 421
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
R KG+ + Y +I G G+ G +ED E + +M G D+ C N ++ + H ++
Sbjct: 422 RNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKI 481
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M++ G +V T+ +++
Sbjct: 482 DQALALFGRMEEEGCDQTVYTFTILIDG 509
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A S+I +G E + M+ G++PS + Y ++ G +E E++ M
Sbjct: 187 AANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVM 246
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ DTV N+++ Y +L + + + M+ + TY +++ +C
Sbjct: 247 DGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQAC 300
>gi|225432159|ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic [Vitis vinifera]
Length = 498
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++Q +++ L K GQ A L +T+ + G Y
Sbjct: 127 ALEVFEMLREQPFYQPKEGTYMKLLVLLGKSGQPLRAHEL-FDTMVEEGCEP--TTELYT 183
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ S+C+ + D+ ++ LNQ L V+ LK+ + + + E+
Sbjct: 184 ALLASYCRSNL---IDEAFSILNQMKTLPRCQPDVFTYSTLLKACV----DASRFELVES 236
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L EEM V+ + P+ ++ GYG+ G ++ME++++ M ES ++ D N +LS +
Sbjct: 237 LYEEMDVRSITPNTVTQNIVLSGYGKAGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLF 296
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ ++ M W +K ++ GI RT+N ++ +
Sbjct: 297 GNKGQIEIMEKWYEKFRNFGIEPETRTFNILIGA 330
>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]
Length = 642
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E T + E + + GS+ V Y LID + K
Sbjct: 301 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYT-VFENMIRKGSKPN--VAIYTVLIDGYAKS 357
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + R GL
Sbjct: 358 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFHTCRFDGLAI 412
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 413 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 472
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +L+
Sbjct: 473 KRMEEEEGCDQTVYTYTILLSG 494
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181
K GQ ++A +E L + +R E + Y +I + C DS G + L Q ++
Sbjct: 251 KAGQTQKA----MEKLRDMETRGHEADKITYMTMIQA-CYADSDFG---SCVALYQEMDE 302
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +E
Sbjct: 303 KG-IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVE 361
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D R++++M +G + D V ++V++ + + + + + G+ + Y+S++
Sbjct: 362 DAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 421
Query: 302 NS 303
+
Sbjct: 422 DG 423
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC--NLIDSFCKHDSKRG 167
N + +I L K G+ +EAE L E K +R+ YC LID+F KH R
Sbjct: 413 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDS-----YCYNALIDAFTKH---RK 464
Query: 168 FDDTYA---RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ A R+ + +VY ++SG+ + + EA L + M KG+ P+
Sbjct: 465 VDEAIALFKRMEEEEGCDQTVYT----YTILLSGMFKEHRNEEALKLWDMMIDKGITPTA 520
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
++ + G G + +I++++ G +D C +M+
Sbjct: 521 ACFRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMI 561
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I ++G E + +M+ G+EP+ + Y ++ G ++ ER+ M
Sbjct: 171 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 230
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
ES + D V N ++ Y + + + L+ M+ G TY +++ +C
Sbjct: 231 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 284
>gi|326517954|dbj|BAK07229.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 549
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 5/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LI+++C ++ F YA LN++ + V + ++ L + G+ EA
Sbjct: 299 VITYTSLIEAYCM---EKDFQTVYAILNEMRSKGCPPNVITYTI--VMHALGKAGRTQEA 353
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ +++R G P Y +IY GR G LED +V++M G R N ++S+
Sbjct: 354 LDIFDKVRGDGCAPDASFYNSLIYILGRAGRLEDANSVVDKMRMTGVRPTVATFNTLISA 413
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
DH++ + L KM++ ++TY +L C
Sbjct: 414 ACDHSQAENALKMLVKMEEQSCKPDIKTYTPLLKLC 449
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L SV + +++ G C+ +EA ++++E
Sbjct: 236 LLDTLCKERSVKRARGAFQELR------GSVPPDESSFNTLVHGWCKARMMNEARDMMKE 289
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G +PS Y +I Y + + I+N+M S G + + +V+ + G
Sbjct: 290 MEEHGFKPSVITYTSLIEAYCMEKDFQTVYAILNEMRSKGCPPNVITYTIVMHALGKAGR 349
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K++ G YNS++
Sbjct: 350 TQEALDIFDKVRGDGCAPDASFYNSLI 376
>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
thaliana]
Length = 1184
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ + G EA L E K E + V F LI+ +CK + D + N
Sbjct: 835 IISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTF-TELINGYCKAGHMK---DAFRVHN 888
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + S V ++I GLC+ G A L+ EM GL+P+ F Y I+ G +
Sbjct: 889 HMIQAGCSPNV--VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 946
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E+ ++V + E+ G DTV ++ +Y E+ + L++M G+ ++ T
Sbjct: 947 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 1006
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 1007 FNVLMNG-FCLHGMLED 1022
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + II L + + EAE E + + G +V Y LID FCK R
Sbjct: 758 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ-GILPDTVV--YTTLIDGFCKRGDIRAAS 814
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ S + ++ISG C++G EA L EM KGLEP +
Sbjct: 815 KFFYEMH-----SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I GY + G ++D R+ N M G + V ++ +L L +M G
Sbjct: 870 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 929
Query: 290 IPFSVRTYNSVLNS 303
+ ++ TYNS++N
Sbjct: 930 LQPNIFTYNSIVNG 943
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 110/243 (45%), Gaps = 23/243 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G + A L+ E + K+G + + Y ++++ CK + ++ +
Sbjct: 905 LIDGLCKEGDLDSANELLHE-MWKIGLQPN--IFTYNSIVNGLCKSGN---IEEAVKLVG 958
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ +N+ + Y +++ C+ G+ +A+ +++EM KGL+P+ + ++
Sbjct: 959 EFEAAGLNADTVTYT------TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 1012
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ G+LED E+++N M + G + N ++ Y N L + M G+
Sbjct: 1013 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 1072
Query: 293 SVRTYNSVLNSCSTIMSM------LQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+TY +++ +M Q++ F +S+ + VL + + K LE V
Sbjct: 1073 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS-VLIKGFLKRKKFLEAREV 1131
Query: 347 LDE 349
D+
Sbjct: 1132 FDQ 1134
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C G+ + LIE M+ KGL+P+ + Y II R+ L + E ++M
Sbjct: 729 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 788
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
G DTV ++ + ++ + +M I V TY ++++ I M++
Sbjct: 789 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 847
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 64/154 (41%), Gaps = 27/154 (17%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR--- 189
L++ T GS R +F+ L+D +++R F+ L S +VY+ R
Sbjct: 606 LLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK 665
Query: 190 ------------------------QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ +I +C++G+ EA +L+ M +KG P
Sbjct: 666 DCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVI 725
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
Y ++ GY R G L+ + +++ M+ G + ++
Sbjct: 726 SYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNS 759
>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
Length = 545
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 14/195 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLS-KLGSRERELVLFYCNLIDSFCKH----DSKRGFDDT 171
+I L K G+ EEA L E + K + V+ Y +LID CK ++++ FDD
Sbjct: 153 LIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDE 212
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ ++ + S+I GLC++G+ E EMR +G EP Y +I
Sbjct: 213 AVERGFIPDAVT--------YTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ + ++ R+ QM GT V TV N++L ++ M++ G
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 324
Query: 292 FSVRTYNSVLNS-CS 305
+V TY+++++ CS
Sbjct: 325 ATVVTYSALMDGFCS 339
>gi|449443726|ref|XP_004139628.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 456
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 113/226 (50%), Gaps = 20/226 (8%)
Query: 87 HPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG 142
H R+++L A ++ + E+ W++ + ++I L K Q+E+A L E + +
Sbjct: 72 HDRITTLRWESALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGC 131
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSS---SVYVKRQALKSMISG 198
E Y L+ ++ S+ G D+ ++ LN++ NS V+ +KS +
Sbjct: 132 EVSHE---SYTALLSAY----SRSGLLDEAFSILNEMKNSPDCQPDVHTYSILIKSCL-- 182
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-VNQMESDGTRV 257
++ ++A+ L+ +M +G++P+ Y I YG+ + +ME I V+ + DG +
Sbjct: 183 --QVFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKP 240
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N L ++G +L M +K +++GI S++T+N +L+S
Sbjct: 241 DVWTMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDS 286
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E+L MR + ++PS ++ YG+ G E ++ ++N +E+
Sbjct: 318 VIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSD 377
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+DTV N ++ +YG + M L M+ G TY ++ + S
Sbjct: 378 IMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYS 428
>gi|449475395|ref|XP_004154439.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Cucumis sativus]
Length = 511
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 109/223 (48%), Gaps = 14/223 (6%)
Query: 87 HPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG 142
H R+++L A ++ + E+ W++ + ++I L K Q+E+A L E + +
Sbjct: 127 HDRITTLRWESALKVFELLREQLWYRPYAGMYIKLIVMLGKCKQQEKAYELFQEMIEEGC 186
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
E Y L+ ++ S+ G D+ ++ LN++ NS +I +
Sbjct: 187 EVSHE---SYTALLSAY----SRSGLLDEAFSILNEMKNSPD-CQPDVHTYSILIKSCLQ 238
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-VNQMESDGTRVDTV 260
+ ++A+ L+ +M +G++P+ Y I YG+ + +ME I V+ + DG + D
Sbjct: 239 VFAFNKAQTLLSDMVTRGIKPNTITYNTFIDAYGKAKMFAEMESILVDMLNDDGCKPDVW 298
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N L ++G +L M +K +++GI S++T+N +L+S
Sbjct: 299 TMNSTLRAFGRSGQLETMEKCYEKFQEAGIQPSIQTFNILLDS 341
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E+L MR + ++PS ++ YG+ G E ++ ++N +E+
Sbjct: 373 VIDAFGRAGNLKQMEHLFRLMRSERIKPSCVTLCSLVRAYGQAGKREKIDSVLNLVENSD 432
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+DTV N ++ +YG + M L M+ G TY ++ + S
Sbjct: 433 IMLDTVFYNCLVDAYGRLECFAEMKKVLGMMEQRGCKPDKTTYRTMARAYS 483
>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
Length = 1269
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q N ++ L K GQ + A +L+L+ + + R + Y +I+ +H SK+
Sbjct: 359 QPNKITYDNLVRGLCKMGQMDRA-SLLLKQMVR--DSHRPDTITYNLIIEGHFRHHSKK- 414
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D + L+++ N+ S V ++ MI GLC+ G+P +A +L+EEM KGL+P+ F Y
Sbjct: 415 --DAFRLLSEMENAGISPNVYTYSI--MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 470
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I GY R G + I ++M D C N ++ + + +M++
Sbjct: 471 APLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE 530
Query: 288 SGIPFSVRTYNSVLNS 303
G+ + TY+ +++
Sbjct: 531 RGLLPNEFTYSGLIHG 546
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ E+A L LE ++ G + V Y LI +C+ + + + ++
Sbjct: 438 MIHGLCQSGEPEKASDL-LEEMTTKGLKPNAFV--YAPLISGYCREGNVSLACEIFDKMT 494
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ VN +Y S+I GL ++G+ E+ +M+ +GL P+ F Y +I+GY +
Sbjct: 495 K-VNVLPDLY----CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 549
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE E++V +M G + + V +L SY +++ ++ + M D G+ R
Sbjct: 550 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 609
Query: 297 YNSVLNSCSTIMSM 310
Y ++++ S+ +M
Sbjct: 610 YGILIHNLSSSGNM 623
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ CK S+R ++ A L+++ S + + ++I G G EA +
Sbjct: 295 YGALINGLCK--SRRS-NEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNADEAFKM 349
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I+EM G++P+ Y ++ G ++G ++ ++ QM D R DT+ N+++ +
Sbjct: 350 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 409
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H+ L +M+++GI +V TY+ +++
Sbjct: 410 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 441
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y NLID F + + D+ + + ++V ++ V + +++ GLC+MGQ A
Sbjct: 327 VVVYANLIDGFMREGNA---DEAFKMIKEMV--AAGVQPNKITYDNLVRGLCKMGQMDRA 381
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+++M P Y II G+ R +D R++++ME+ G + ++++
Sbjct: 382 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 441
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + L++M G+ + Y +++
Sbjct: 442 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 476
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA +L + K GS V Y +LI CK + + + L+++ S V
Sbjct: 624 EAAFRVLSGIEKNGSVPD--VHVYSSLISGLCKTADR---EKAFGILDEM--SKKGVDPN 676
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++I GLC+ G A N+ + KGL P+ Y +I G ++G + + + N
Sbjct: 677 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 736
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M + G D +++ + +L + + +++M G S+ ++N++++
Sbjct: 737 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 790
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 89/222 (40%), Gaps = 33/222 (14%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY-ARLNQLVNS 181
K G E AE L+ L G + +++ Y +L++S+ K D T+ + L+Q V
Sbjct: 549 KNGDLESAEQLVQRMLDT-GLKPNDVI--YIDLLESYFKSDDIEKVSSTFKSMLDQGVML 605
Query: 182 SSSVY----------------------VKRQA-------LKSMISGLCEMGQPHEAENLI 212
+ +Y +++ S+ISGLC+ +A ++
Sbjct: 606 DNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 665
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+EM KG++P+ Y +I G + G + + N + + G + V ++
Sbjct: 666 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 725
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
++S +M +GI Y+ + CS+ + Q +
Sbjct: 726 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAM 767
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 14/236 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQG 125
+P + NAL L + + S A L + +T + + +P +V+ +I K+G
Sbjct: 159 TPDVFSYNALIKGLCVE----KKSQEALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEG 214
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
+ ++A L E + G V+ Y +LID CK + D A L + + V
Sbjct: 215 EVDKAYFLFHEMM---GQGLPPDVVTYNSLIDGLCK---AQAMDKAVAILQHMFDKG--V 266
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ MI G C +GQ EA L+++M GL+P Y +I Y ++G +
Sbjct: 267 MPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARS 326
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + M G + ++ +++L Y L + L M GIPF R +N ++
Sbjct: 327 VFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 382
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I K G ++A T E + + G R V+ Y +I CK +D N
Sbjct: 381 LICAYAKHGAVDKAMTAFTE-MRQNGLRPD--VVSYSTVIHILCKTGR---VEDAVYHFN 434
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+V+ S + + S+I GLC +G+ + E L EM +G+ P I+ +
Sbjct: 435 QMVSEGLSPNII--SFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCK 492
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + + + + G + D V N ++ Y ++ + L +M G+ T
Sbjct: 493 EGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWT 552
Query: 297 YNSVLNS 303
YNS+LN
Sbjct: 553 YNSLLNG 559
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 80/182 (43%), Gaps = 43/182 (23%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+ +++ LC+ G+ EA++ + + G++P Y +I GY +G +++ + +++M
Sbjct: 483 MNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMV 542
Query: 252 SDGTRVDTVCSNMVLSSYGDHNEL--------------------------------SRMV 279
S G R D+ N +L+ Y + + R+V
Sbjct: 543 SIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIV 602
Query: 280 ----LWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSNDFPLSILELTEV 329
L++ KM D G + TYN+VL NSC + M +DL S +F L + + V
Sbjct: 603 AARELYM-KMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIV 661
Query: 330 LN 331
+N
Sbjct: 662 IN 663
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 4/128 (3%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLI-EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
V+ L +I GLC+ + +A +++ M G P F Y +I G ++
Sbjct: 124 VQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 183
Query: 246 IVNQMESDG---TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ M +DG + V N V+ + E+ + +M G+P V TYNS+++
Sbjct: 184 LLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLID 243
Query: 303 SCSTIMSM 310
+M
Sbjct: 244 GLCKAQAM 251
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 129/328 (39%), Gaps = 47/328 (14%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR---FLSSLALAVTRDSKAASRLISKFVASSPQF-- 71
CCR R R T+ L R K G + ++S+ L +K + +++ + P+
Sbjct: 129 CCRTR--RPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGV 186
Query: 72 ----IALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
I+ N + L D+ R L L+ + + N +I L ++G+
Sbjct: 187 EPDTISYNTVVKTLCEDSRSQRALDL---LHTMVKKSGGCSPNVVTYNTVIHGLFREGEV 243
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDDTYARL 175
+A L E + + + V+ Y ++ID+ CK + GF
Sbjct: 244 SKACNLFHEMMQQGVVPD---VVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTY 300
Query: 176 NQLVN------------------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
N +++ +S + S +S LC+ G+ EA + M
Sbjct: 301 NCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAA 360
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
KG +P+ Y +++GY G DM + N ME +G D N+V+ +YG +
Sbjct: 361 KGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDE 420
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+L +M++ G+ TY V+ + S
Sbjct: 421 TMLIFTQMQEQGVIPDACTYGIVIAAFS 448
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA + G+ +A + ++ +G + +V Y +LI FC H + +
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIA-MGLKPEGIV--YHSLIQGFCMHGN-------LVKAK 492
Query: 177 QLVNSSSSVYVKRQAL---KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+LV+ S + R + S+I+ LC+ G+ EA ++ + + G P + +I G
Sbjct: 493 ELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDG 552
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
YG +G +E +++ M S G D V N ++ Y + + ++ +M G+ +
Sbjct: 553 YGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPT 612
Query: 294 VRTYNSVLNS 303
TY +L+
Sbjct: 613 TITYGIILHG 622
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I LC+ +AE ++ +M G +P+ Y C+I+GY G ++ + +M S
Sbjct: 267 SIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQ 326
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST---IMSM 310
G + V N +SS H + + M G ++ TY+ +L+ +T + M
Sbjct: 327 GLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDM 386
Query: 311 LQDLNS 316
L NS
Sbjct: 387 LNLFNS 392
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+G+ EA I + + +G ER V+ + +LID + + + L+
Sbjct: 514 IINSLCKEGRVVEAHD-IFDFVIHIG--ERPDVITFNSLIDGYGLVGK---IEKAFGVLD 567
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ S+ + + ++I G C G+ + L EM KG++P+ Y I++G
Sbjct: 568 AMI--SAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFN 625
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +++ ++M GT +D ++L +N + +K+ + F++
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNIAI 685
Query: 297 YNSVLNS 303
N+++++
Sbjct: 686 INTMIDA 692
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 3/157 (1%)
Query: 177 QLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L NS + + ++ +I + G E + +M+ +G+ P Y +I +
Sbjct: 388 NLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAF 447
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-S 293
R+G L D NQM + G + + + + ++ + H L + + +M GIP +
Sbjct: 448 SRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPN 507
Query: 294 VRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVL 330
+ +NS++NS +++ + DF + I E +V+
Sbjct: 508 IVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVI 544
>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g05670, mitochondrial; Flags: Precursor
gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
Length = 741
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ + G EA L E K E + V F LI+ +CK + D + N
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTF-TELINGYCKAGHMK---DAFRVHN 445
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + S V ++I GLC+ G A L+ EM GL+P+ F Y I+ G +
Sbjct: 446 HMIQAGCSPNV--VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E+ ++V + E+ G DTV ++ +Y E+ + L++M G+ ++ T
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 564 FNVLMNG-FCLHGMLED 579
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + II L + + EAE E + + G +V Y LID FCK R
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ-GILPDTVV--YTTLIDGFCKRGDIRAAS 371
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ S + ++ISG C++G EA L EM KGLEP +
Sbjct: 372 KFFYEMH-----SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I GY + G ++D R+ N M G + V ++ +L L +M G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 290 IPFSVRTYNSVLNS 303
+ ++ TYNS++N
Sbjct: 487 LQPNIFTYNSIVNG 500
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G + A L+ E + K+G + + Y ++++ CK + ++ +
Sbjct: 462 LIDGLCKEGDLDSANELLHE-MWKIGLQPN--IFTYNSIVNGLCKSGN---IEEAVKLVG 515
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ +N+ + Y +++ C+ G+ +A+ +++EM KGL+P+ + ++
Sbjct: 516 EFEAAGLNADTVTYT------TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ G+LED E+++N M + G + N ++ Y N L + M G+
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629
Query: 293 SVRTYNSVLNSCSTIMSM------LQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+TY +++ +M Q++ F +S+ VL + + K LE V
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV-STYSVLIKGFLKRKKFLEAREV 688
Query: 347 LDE 349
D+
Sbjct: 689 FDQ 691
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C G+ + LIE M+ KGL+P+ + Y II R+ L + E ++M
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
G DTV ++ + ++ + +M I V TY ++++ I M++
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I +C++G+ EA +L+ M +KG P Y ++ GY R G L+ + +++ M+ G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 255 TR 256
+
Sbjct: 312 LK 313
>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
lyrata subsp. lyrata]
Length = 1164
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 94/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ + G EA L E L + E +++ F L++ +CK + D + N
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCR--GLEPDIITF-TELMNGYCKAGHIK---DAFRVHN 868
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + S V ++I GLC+ G A L+ EM GL+P+ F Y I+ G +
Sbjct: 869 HMIQAGCSPNV--VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 926
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E+ ++V + E+ G DTV ++ +Y E+ + L +M G+ ++ T
Sbjct: 927 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVT 986
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 987 FNVLMNG-FCLHGMLED 1002
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N II L + + EAE E + + G +V Y L+D FCK R
Sbjct: 738 NSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ-GILPDTIV--YTTLVDGFCKRGDIRAAS 794
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ S + ++ISG C++G EA L EM +GLEP +
Sbjct: 795 KFFYEMH-----SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTE 849
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++ GY + G ++D R+ N M G + V ++ +L L +M G
Sbjct: 850 LMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 909
Query: 290 IPFSVRTYNSVLNS 303
+ ++ TYNS++N
Sbjct: 910 LQPNIFTYNSIVNG 923
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 98/217 (45%), Gaps = 22/217 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G + A L+ E + K+G + + Y ++++ CK + ++ +
Sbjct: 885 LIDGLCKEGDLDSANELLHE-MWKIGLQPN--IFTYNSIVNGLCKSGN---IEEAVKLVG 938
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ +N+ + Y +++ C+ G+ +A+ ++ EM KGL+P+ + ++
Sbjct: 939 EFEAAGLNADTVTYT------TLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMN 992
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ G+LED E+++N M + G + N ++ Y N L + M G+
Sbjct: 993 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEP 1052
Query: 293 SVRTYNSVLNSCSTIMSM------LQDLNSNDFPLSI 323
+TY +++ +M Q++ F +S+
Sbjct: 1053 DGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSV 1089
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 57/119 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G C G+ + LIE+M+ KGL+P+ + Y II R+ L + E ++M
Sbjct: 709 TVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQ 768
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
G DT+ ++ + ++ + +M I V TY ++++ I M++
Sbjct: 769 GILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 827
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L K G EEA L+ E G + Y L+D++CK D L
Sbjct: 920 IVNGLCKSGNIEEAVKLVGE-FEAAGLNADTVT--YTTLMDAYCKSGE---MDKAQEILT 973
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ + +++G C G + E L+ M KG+ P+ + C++ Y
Sbjct: 974 EMLGKGLQPTI--VTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCI 1031
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
L+ I M S G D ++ + + + Q+MK G SV T
Sbjct: 1032 RNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVST 1091
Query: 297 YNSVLNS 303
Y+ ++
Sbjct: 1092 YSVLIKG 1098
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I +C++G+ +EA +L+ M +KG P Y +I GY R G L+ + +++ +M+ G
Sbjct: 675 VIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKG 734
Query: 255 TRVDT 259
+ ++
Sbjct: 735 LKPNS 739
>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
Length = 748
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSK 165
NP +I L K G+ EAE ++ E +S+ + + + Y LID FCK +
Sbjct: 322 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG---VIYTTLIDGFCKLGNVSSAY 378
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ R S ++ A+ I GLC+ G+ EA+ L EM K LEP
Sbjct: 379 RLFDEMQKR------KISPDFITYTAV---ICGLCQTGRVMEADKLFHEMVCKRLEPDEV 429
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I GY + G +++ + NQM G + V + E+ L +M
Sbjct: 430 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 489
Query: 286 KDSGIPFSVRTYNSVLNS 303
G+ ++ TYNS++N
Sbjct: 490 CRKGLELNIYTYNSLVNG 507
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ EA+ L E + K R + Y LID +CK + + ++ N
Sbjct: 399 VICGLCQTGRVMEADKLFHEMVCK---RLEPDEVTYTALIDGYCKEGKMK---EAFSLHN 452
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q++ + + ++ GLC+ G+ A L+ EM KGLE + + Y ++ G +
Sbjct: 453 QMLQMGLTPNI--VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 510
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ +++ ME G D V ++ +Y E+ R L++M D + +V T
Sbjct: 511 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 570
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 571 FNVLMNG-FCMSGMLED 586
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 1/137 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G C++G+ LIEEM++KGL+P+ + Y +I + G + + ER++ +M S+
Sbjct: 293 TVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE 352
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQ 312
G D V ++ + +S +M+ I TY +V+ C T M
Sbjct: 353 GIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEA 412
Query: 313 DLNSNDFPLSILELTEV 329
D ++ LE EV
Sbjct: 413 DKLFHEMVCKRLEPDEV 429
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC++G+ EA L+ +M ++G P Y +I GY ++G L+ + +++ +M+ G + +
Sbjct: 263 LCQLGRVVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPN 322
Query: 259 TVCSN---MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++L G E R+ L++M GI Y ++++
Sbjct: 323 PYTYNGVILLLCKTGKVAEAERV---LREMISEGIAPDGVIYTTLIDG 367
>gi|334188265|ref|NP_199684.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635750|sp|Q9FKC3.2|PP424_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g48730, chloroplastic; Flags: Precursor
gi|332008334|gb|AED95717.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 84 DTTHPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLS 139
++ H R+++L A ++ + E+ W++ N + ++I L K Q E+A L E ++
Sbjct: 119 ESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMIN 178
Query: 140 KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL 199
+ E+ Y L+ ++ + FD + L ++ SS + +I
Sbjct: 179 EGCVVNHEV---YTALVSAYSRSGR---FDAAFTLLERM-KSSHNCQPDVHTYSILIKSF 231
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVD 258
++ + ++L+ +MR +G+ P+ Y +I YG+ + +ME + QM D + D
Sbjct: 232 LQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPD 291
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N L ++G + ++ M +K + SGI ++RT+N +L+S
Sbjct: 292 SWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S + GQ EN E+ + G+EP+ + ++ YG+ G + M ++ M
Sbjct: 294 TMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYM 353
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ V N+V+ ++G +L +M + M+ S R + S + CS +
Sbjct: 354 QKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SERIFPSCVTLCSLV 404
>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
Length = 648
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 16/198 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSK 165
NP +I L K G+ EAE ++ E +S+ + + + Y LID FCK +
Sbjct: 222 NPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDG---VIYTTLIDGFCKLGNVSSAY 278
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ R S ++ A+ I GLC+ G+ EA+ L EM K LEP
Sbjct: 279 RLFDEMQKR------KISPDFITYTAV---ICGLCQTGRVMEADKLFHEMVCKRLEPDEV 329
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I GY + G +++ + NQM G + V + E+ L +M
Sbjct: 330 TYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEM 389
Query: 286 KDSGIPFSVRTYNSVLNS 303
G+ ++ TYNS++N
Sbjct: 390 CRKGLELNIYTYNSLVNG 407
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ EA+ L E + K R + Y LID +CK + + ++ N
Sbjct: 299 VICGLCQTGRVMEADKLFHEMVCK---RLEPDEVTYTALIDGYCKEGKMK---EAFSLHN 352
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q++ + + ++ GLC+ G+ A L+ EM KGLE + + Y ++ G +
Sbjct: 353 QMLQMGLTPNI--VTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCK 410
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ +++ ME G D V ++ +Y E+ R L++M D + +V T
Sbjct: 411 AGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVT 470
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 471 FNVLMNG-FCMSGMLED 486
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
LIEEM++KGL+P+ + Y +I + G + + ER++ +M S+G D V ++ +
Sbjct: 210 LIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFC 269
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQDLNSNDFPLSILELTEV 329
+S +M+ I TY +V+ C T M D ++ LE EV
Sbjct: 270 KLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEV 329
>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
Length = 1013
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 97/199 (48%), Gaps = 8/199 (4%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ Q N ++ L K GQ + A +L+L+ + + R + Y +I+ +H S
Sbjct: 378 AGVQPNKITYDNLVRGLCKMGQMDRA-SLLLKQMVR--DSHRPDTITYNLIIEGHFRHHS 434
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
K+ D + L+++ N+ S V ++ MI GLC+ G+P +A +L+EEM KGL+P+
Sbjct: 435 KK---DAFRLLSEMENAGISPNVYTYSI--MIHGLCQSGEPEKASDLLEEMTTKGLKPNA 489
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
F Y +I GY R G + I ++M D C N ++ + + +
Sbjct: 490 FVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQ 549
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M++ G+ + TY+ +++
Sbjct: 550 MQERGLLPNEFTYSGLIHG 568
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 101/208 (48%), Gaps = 8/208 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E + N + +I L + G+ E+A L LE ++ G + V Y LI +C+
Sbjct: 446 ENAGISPNVYTYSIMIHGLCQSGEPEKASDL-LEEMTTKGLKPNAFV--YAPLISGYCRE 502
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ + + ++ + VN +Y S+I GL ++G+ E+ +M+ +GL P
Sbjct: 503 GNVSLACEIFDKMTK-VNVLPDLY----CYNSLIFGLSKVGRVEESTKYFAQMQERGLLP 557
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ F Y +I+GY + G LE E++V +M G + + V +L SY +++ ++
Sbjct: 558 NEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTF 617
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ M D G+ R Y ++++ S+ +M
Sbjct: 618 KSMLDQGVMLDNRIYGILIHNLSSSGNM 645
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ CK S+R ++ A L+++ S + + ++I G G EA +
Sbjct: 317 YGALINGLCK--SRRS-NEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNADEAFKM 371
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I+EM G++P+ Y ++ G ++G ++ ++ QM D R DT+ N+++ +
Sbjct: 372 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 431
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H+ L +M+++GI +V TY+ +++
Sbjct: 432 HHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 463
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y NLID F + + D+ + + ++V ++ V + +++ GLC+MGQ A
Sbjct: 349 VVVYANLIDGFMREGNA---DEAFKMIKEMV--AAGVQPNKITYDNLVRGLCKMGQMDRA 403
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+++M P Y II G+ R +D R++++ME+ G + ++++
Sbjct: 404 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHG 463
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + L++M G+ + Y +++
Sbjct: 464 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 498
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA +L + K GS V Y +LI CK + + + L+++ S V
Sbjct: 646 EAAFRVLSGIEKNGSVPD--VHVYSSLISGLCKTADR---EKAFGILDEM--SKKGVDPN 698
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++I GLC+ G A N+ + KGL P+ Y +I G ++G + + + N
Sbjct: 699 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 758
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M + G D +++ + +L + + +++M G S+ ++N++++
Sbjct: 759 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 812
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 53/119 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISGLC+ +A +++EM KG++P+ Y +I G + G + + N + +
Sbjct: 669 SLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAK 728
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
G + V ++ ++S +M +GI Y+ + CS+ + Q
Sbjct: 729 GLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQ 787
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+++CK R FD L ++ + +I+GLC G EA
Sbjct: 244 VYTYSTLIEAYCK---VREFDTAKKVLVEMRERGCGL--NTVTYNVLIAGLCRSGAVEEA 298
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++M GL P GF Y +I G + + + ++++M + + V ++
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 358
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ G+ +E +M+ ++M +G+ + TY++++
Sbjct: 359 FMREGNADEAFKMI---KEMVAAGVQPNKITYDNLV 391
>gi|357449339|ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 849
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 92/197 (46%), Gaps = 15/197 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-----S 164
+P LV + LD G+ A ++ILE L ++ S+ E F C + S C + +
Sbjct: 269 DPTLVTYNV-MLDVYGKMGRAWSMILELLDEMRSKGLEFDEFTCTTVISACGREGILDEA 327
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+R FDD +LN +++ SM+ + G EA N+++EM EP
Sbjct: 328 RRFFDDL--KLNGYKPGTAT-------YNSMLQVFGKAGVYTEALNILKEMEDNNCEPDA 378
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y ++ Y R G ++ +++ M S G + + V+++YG + + + +
Sbjct: 379 ITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVFGQ 438
Query: 285 MKDSGIPFSVRTYNSVL 301
MK+ G +V TYN+VL
Sbjct: 439 MKELGCVPNVCTYNNVL 455
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 88/219 (40%), Gaps = 35/219 (15%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM-ERIVN 248
+A +++ G+ A + E+M+ GL+P+ Y ++ YG++G M +++
Sbjct: 238 KACTTVLHAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLD 297
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308
+M S G D V+S+ G L + +K +G TYN
Sbjct: 298 EMRSKGLEFDEFTCTTVISACGREGILDEARRFFDDLKLNGYKPGTATYN---------- 347
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLG 368
SMLQ TE LN ++KE+ED++ +A+ ++ G H
Sbjct: 348 SMLQVFGKAGV------YTEALN-----ILKEMEDNNCEPDAITYNELVAAYVRAGFHDE 396
Query: 369 SAYFIILQWMDEMRNRFNNEKHVIPAEI---TVVCGSGK 404
A I D M + K V+P I TV+ GK
Sbjct: 397 GAAVI-----DTMAS-----KGVMPNAITYTTVINAYGK 425
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 41/178 (23%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG--------------- 238
++++ L G AE+++ +MR KG +P+ Y +++ Y + G
Sbjct: 558 ALLNALARRGNWKAAESVVLDMRKKGFKPNETSYSLLLHCYSKAGNVRGLEKVEMEIYDG 617
Query: 239 --------------------LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
L+ MER +Q++++G ++D V N +LS + + +L +
Sbjct: 618 HVFPSWMLLRTLVLTNYKCRQLKGMERAFHQLQNNGYKLDMVVINSMLSMFVRNQKLEKA 677
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLN------SCSTIMSMLQDLNSNDFPLSILELTEVL 330
L + SG+ ++ TYNS+++ C ML+D+ ++ ++ V+
Sbjct: 678 HEMLDVIHVSGLQPNLVTYNSLIDLYARVGDCWKAEEMLKDIQNSGISPDVVSYNTVI 735
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
++NS S++V+ Q L+ +A +++ + V GL+P+ Y +I Y R+
Sbjct: 660 VINSMLSMFVRNQKLE-------------KAHEMLDVIHVSGLQPNLVTYNSLIDLYARV 706
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G E ++ +++ G D V N V+ + + + L +M +G+ T+
Sbjct: 707 GDCWKAEEMLKDIQNSGISPDVVSYNTVIKGFCKKGLVQEAIRILSEMTANGVQPCPITF 766
Query: 298 NSVLNSC 304
N+ + SC
Sbjct: 767 NTFM-SC 772
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 16/200 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG----FDDTY 172
II L K G+ EAE L L + K G +V Y +I FCK + FD+
Sbjct: 318 IILLLCKNGEVVEAEQL-LRGMRKWGVFPDNVV--YTTVISGFCKLGNVSAACKLFDEM- 373
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R ++V + S+I G+C+ G+ EA + EM VKGLEP Y +I
Sbjct: 374 -RRKKIVPDIVT-------YTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALID 425
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY + G +++ + NQM G + V + + E+ L +M G+
Sbjct: 426 GYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQP 485
Query: 293 SVRTYNSVLNSCSTIMSMLQ 312
+V TYN+++N I ++ Q
Sbjct: 486 NVYTYNTIVNGLCKIGNIEQ 505
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 112 KLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
K+V +I+ + + K G+ EA + E L K G E+ Y LID +CK
Sbjct: 377 KIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVK-GLEPDEVT--YTALIDGYCKAGEM 433
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ + ++ NQ+V + V ++ GLC+ G+ A L+ EM KGL+P+ +
Sbjct: 434 K---EAFSVHNQMVQKGLTPNV--VTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVY 488
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y I+ G ++G +E +++ +M+ G DT+ ++ +Y E+++ L+ M
Sbjct: 489 TYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM 548
Query: 286 KDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ + ++ T+N ++N + ML+D
Sbjct: 549 LNKRLQPTLVTFNVLMNGFC-MSGMLED 575
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 71/183 (38%), Gaps = 30/183 (16%)
Query: 149 VLFYCNLIDSFCKHD------------SKRGFDDTYARLNQLVNSSSSVYVKRQALK--- 193
V+ Y L D CK+ S++G N +VN + Q +K
Sbjct: 452 VVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLME 511
Query: 194 ---------------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+++ C+MG+ +A L+ M K L+P+ + ++ G+ G
Sbjct: 512 EMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSG 571
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+LED ER++ M G + N ++ Y N + + M D G+ TYN
Sbjct: 572 MLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYN 631
Query: 299 SVL 301
++
Sbjct: 632 ILI 634
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C +G+ + L++E++ KGL+P + Y II + G + + E+++ M G D
Sbjct: 288 CRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDN 347
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V V+S + +S +M+ I + TY SV++
Sbjct: 348 VVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHG 391
>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Brachypodium distachyon]
Length = 718
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 105/236 (44%), Gaps = 13/236 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
+P +A NA+ LS D + P L + + + +N ++ L +GQR
Sbjct: 117 APSLLAYNAVLLALS-DASLPSARRLLASMLRDGVAPNVYTYNI-----LVRALCARGQR 170
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
EEA ++ + + G V+ Y L+ +FC+ G D RL ++ V
Sbjct: 171 EEALGVVGDDMRGAGCAPN--VVTYNTLVAAFCR----AGEVDAAERLVGVMREGG-VRP 223
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++++GLC+ G+ +A + +EM +GL P G Y ++ GY + G L + +
Sbjct: 224 SLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVF 283
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M G D V ++ + L R V + +M++ G+ + T+ ++++
Sbjct: 284 AEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDG 339
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 18/203 (8%)
Query: 111 PKLVA--EIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
P LV ++ L K G+ E+A + + E L+ G LV YC + C H++
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCK---AGCLHEA 279
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
F + + V S+I +C G A L+ +MR +GL +
Sbjct: 280 LAVFAEM---------AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNE 330
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
F + +I G+ R G L+D + +M + VC N++++ Y + + +
Sbjct: 331 FTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHE 390
Query: 285 MKDSGIPFSVRTYNSVLNSCSTI 307
M+ G+ V TY+++L+ I
Sbjct: 391 MEAKGMKPDVVTYSTILSGYCKI 413
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 84/192 (43%), Gaps = 18/192 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF-DDTYARL 175
+I + + G E A L+ + + + G R E + LID FC++ GF DD +
Sbjct: 301 LIHAMCRAGNLERAVALVGQ-MRERGLRMNEFT--FTALIDGFCRN----GFLDDALLAM 353
Query: 176 NQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++ + S Y +I+G C++G+ EA LI EM KG++P Y I+
Sbjct: 354 KEMRECRIQPSVVCY------NVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTIL 407
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
GY ++G + + +M G D + + ++ + L +KM G+
Sbjct: 408 SGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQ 467
Query: 292 FSVRTYNSVLNS 303
TY ++++
Sbjct: 468 PDEFTYTTLIDG 479
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNS 181
K G+ +EA LI E +K + V+ Y ++ +CK D+ F+ L + V
Sbjct: 377 KLGRMDEARELIHEMEAK---GMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVP 433
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ Y S+I GLCE + +A L E+M GL+P F Y +I G+ + G ++
Sbjct: 434 DAITY------SSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQ 487
Query: 242 DMERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+ ++M G D V +++ LS E R++ L + +P +++ Y
Sbjct: 488 KALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLY--YEDPVPDNIK-YE 544
Query: 299 SVLNSCST 306
++++ C T
Sbjct: 545 ALMHCCRT 552
>gi|334185941|ref|NP_190885.5| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
gi|332645523|gb|AEE79044.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
thaliana]
Length = 499
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 98/206 (47%), Gaps = 8/206 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + ++ W++ K ++ L Q ++A +L+ E + L + + Y
Sbjct: 127 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQA-SLLFEVM--LSEGLKPTIDVYT 183
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+LI + K + D ++ L + + S S +IS C++G+ ++++
Sbjct: 184 SLISVYGKSEL---LDKAFSTL-EYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 239
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS-NMVLSSYGDH 272
EM G+ S Y II GYG+ G+ E+ME ++ M DG + VC+ N ++ SYG+
Sbjct: 240 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 299
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYN 298
+ +M W + + G+ + T+N
Sbjct: 300 RNMRKMESWYSRFQLMGVQPDITTFN 325
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + ++++LE +S LG + Y +ID + K F++ + L ++
Sbjct: 227 KLGRFDLVKSIVLE-MSYLGVGCSTVT--YNTIIDGYGKAGM---FEEMESVLADMIEDG 280
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S+ L S+I + E+ ++ G++P + +I +G+ G+ +
Sbjct: 281 DSL-PDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKK 339
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M +++ ME + TV N+V+ ++G + +M +KMK G+ + TY S++N
Sbjct: 340 MCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVN 399
Query: 303 SCS 305
+ S
Sbjct: 400 AYS 402
>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 662
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 319 DEKGLQVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKT 375
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ + V ++ +++GLC+ G+ EA + + R GL
Sbjct: 376 GS---VEDAIRLLHRMIDEGFNPDVVTYSV--VVNGLCKNGRVEEAMDYFQTCRFNGLAI 430
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEALALF 490
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 491 KRMEEEEGCDQTVYTYTILISG 512
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC--NLIDSFCKHDSKRG 167
N + +I L K G+ +EAE L E K +R+ YC LID+F KH
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDS-----YCYNALIDAFTKHGKVDE 485
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ R+ + +VY +ISG+ + + EA L + M KG+ P+
Sbjct: 486 ALALFKRMEEEEGCDQTVYT----YTILISGMFKEHRNEEALKLWDMMIDKGITPTAACL 541
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+ + G G + +I++++ G +D C +M+
Sbjct: 542 RALSTGLCLSGKVARACKILDELAPMGVILDAACEDMI 579
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I ++G E + +M+ G+EP+ + Y ++ G ++ ER+ MES
Sbjct: 192 SLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESG 251
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STI 307
+ D V N ++ Y + + + L+ M+ G+ TY +++ +C S+
Sbjct: 252 RIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQACYADSDFSSC 311
Query: 308 MSMLQDLN 315
+++ Q+++
Sbjct: 312 VALYQEMD 319
>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
Length = 762
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-FDDTYARL 175
+I L + G+ +EAE ++ E L++ + + Y L+D +CK RG + +
Sbjct: 405 LINGLCRAGELKEAEKVLQEMLARRLDVDE---VTYTVLVDGYCK----RGKMAEAFQVH 457
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N +V + V ++ GLC+ G A L+ EM KGLE + Y +I G
Sbjct: 458 NTMVQRGVAPNV--VTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLC 515
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G L+ R + M++ G + D ++ + EL R LQ+M D+GI ++
Sbjct: 516 KAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIV 575
Query: 296 TYNSVLNS 303
TYN ++N
Sbjct: 576 TYNVLMNG 583
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++SG C G A +EM+ KGL G Y +I G R G L++ E+++ +M +
Sbjct: 369 TVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLAR 428
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
VD V +++ Y +++ M G+ +V TY ++
Sbjct: 429 RLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTAL 475
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +G+ A L+++M +G+EP+ Y ++ G + D +V M
Sbjct: 300 LIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHK 359
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D VLS + + +L W +M+ G+ TY +++N
Sbjct: 360 VILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLING 408
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179
L KQG + A E L ++ ++ EL Y +LI+ CK G+ D R +
Sbjct: 479 LCKQGDVQAAN----ELLHEMSNKGLELNACTYNSLINGLCK----AGYLDQAMRTMADM 530
Query: 180 NSSS---SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ VY ++I LC+ G+ A +L++EM G++P+ Y ++ G+
Sbjct: 531 DAAGLKPDVYT----YTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCM 586
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E ++++ M + N ++ Y N + + M + + T
Sbjct: 587 SGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENT 646
Query: 297 YNSVLNSCSTIMSM 310
YN ++ SM
Sbjct: 647 YNILIKGHCKARSM 660
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 71/147 (48%), Gaps = 9/147 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y L+D FCK +G+ + + +L + S Y K + +I +C+ G +A
Sbjct: 451 YSILLDGFCK----QGY---FGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDAR 503
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L E+ VKGL+P+ Y II G + GLL++ ME DG D + N+++ +
Sbjct: 504 KLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGF 563
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRT 296
H + SR V + +M+D G V T
Sbjct: 564 LHHKDESRAVQLIGEMRDKGFIADVGT 590
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+ +CK KR D+ N++++ + + ++I GLC++G EA
Sbjct: 378 VFSYNILINGYCK--VKR-IDEAKQLFNEMIHQGLTP--NNVSYNTLIHGLCQLGSLREA 432
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL + M G P+ F Y ++ G+ + G R+ M+S ++ + V N+++ +
Sbjct: 433 RNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDA 492
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L ++ G+ + + Y +++N
Sbjct: 493 MCKSGNLRDARKLFSELFVKGLQPNAQIYTTIING 527
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 86/215 (40%), Gaps = 50/215 (23%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNS 181
QR + +L + KLG + ++ + LI+ CK + FDD AR
Sbjct: 147 QRVDLAFSVLAKIIKLGLQPT--IVTFTTLINWLCKVGKFAQAMELFDDMVAR-----GC 199
Query: 182 SSSVYVKRQALKSMISGLCEMG-----------------QPH------------------ 206
VY ++I+GLC++G QP+
Sbjct: 200 RPDVY----TYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVN 255
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA ++ M+VKG+ P F Y +I G ++ ++N+M S D V N+++
Sbjct: 256 EALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLV 315
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++S L+ M + G+ V TY+S++
Sbjct: 316 DTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLM 350
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/167 (18%), Positives = 74/167 (44%), Gaps = 5/167 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y +LI C + + A LN++ S ++ ++ +C+ G+ EA
Sbjct: 273 IFTYNSLIQGLCNFSQ---WKEASALLNEM--RSLNIMPDIVTFNVLVDTICKEGKVSEA 327
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ +++ M G+EP Y ++YGY + + ++ + M + G + D N++++
Sbjct: 328 QGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315
Y + +M G+ + +YN++++ + S+ + N
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARN 434
>gi|75265624|sp|Q9SCP4.1|PP279_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g53170
gi|6630737|emb|CAB64220.1| nodulin / glutamate-ammonia ligase-like protein [Arabidopsis
thaliana]
Length = 447
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 8/211 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + ++ W++ K ++ L Q ++A +L+ E + L + + Y
Sbjct: 77 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQA-SLLFEVM--LSEGLKPTIDVYT 133
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+LI + K + D ++ L + + S S +IS C++G+ ++++
Sbjct: 134 SLISVYGKSEL---LDKAFSTL-EYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS-NMVLSSYGDH 272
EM G+ S Y II GYG+ G+ E+ME ++ M DG + VC+ N ++ SYG+
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M W + + G+ + T+N ++ S
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILS 280
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + ++++LE +S LG + Y +ID + K F++ + L ++
Sbjct: 177 KLGRFDLVKSIVLE-MSYLGVGCSTVT--YNTIIDGYGKAGM---FEEMESVLADMIEDG 230
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S+ L S+I + E+ ++ G++P + +I +G+ G+ +
Sbjct: 231 DSL-PDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKK 289
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M +++ ME + TV N+V+ ++G + +M +KMK G+ + TY S++N
Sbjct: 290 MCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVN 349
Query: 303 SCS 305
+ S
Sbjct: 350 AYS 352
>gi|297807255|ref|XP_002871511.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
gi|297317348|gb|EFH47770.1| hypothetical protein ARALYDRAFT_350399 [Arabidopsis lyrata subsp.
lyrata]
Length = 1202
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 8/203 (3%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+S + N + ++ L K+GQ E+AE ++ ++K G E++ Y +ID +
Sbjct: 720 DSGLKMNAYTCSILLNALCKEGQIEKAEEILGREMAK-GLVPNEVL--YNTMIDGY---- 772
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
S++G D AR+ + A +I CE+G AE + +M++KG+ PS
Sbjct: 773 SRKG-DLVGARMKIDAMEKQGMKPDHLAYNCLIRTFCELGDMENAEQEVNKMKLKGVSPS 831
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GYGR + ++ +ME +GT + V +++ ++L + +
Sbjct: 832 VETYNILIGGYGRKYEFDKCFDLLKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKR 891
Query: 284 KMKDSGIPFSVRTYNSVLNSCST 306
M+D G+ +VR YN +++ C +
Sbjct: 892 DMEDRGVSPNVRIYNMLIDGCCS 914
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYAR--LNQLVNSSSSVYVKRQALKSMISGLCEM 202
V Y LID CK D+++ FD+ AR L L+ ++ +I G C+
Sbjct: 587 VFIYNVLIDGLCKVRQMKDAEQLFDEMLARRLLPSLITYNT-----------LIDGYCKD 635
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P ++ + E M+ +EPS + ++ G + G++ED E ++ +M+ G D
Sbjct: 636 GNPEKSFKVRERMKADNIEPSLITFNTLLKGLFKAGMVEDAENVLTEMKDQGFVPDAFTF 695
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ Y +++ + + DSG+ + T + +LN+
Sbjct: 696 SILFDGYSSNDKADAALGVYETAVDSGLKMNAYTCSILLNA 736
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G+ +A EEM KG+E + Y +I G G L + E ++ ++ G
Sbjct: 908 LIDGCCSKGKIEDAFRFSEEMFKKGIELNLVTYNTLIDGLSMNGKLAEAEDMLLEISRKG 967
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ D N ++S Y + R + ++MK SGI +++TY+ +++ C+
Sbjct: 968 LKPDVFTYNSLISGYRFAGNVQRCIALYEEMKTSGIKPTLKTYHLLISLCT 1018
>gi|356532886|ref|XP_003535000.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 485
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 17/217 (7%)
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
H R S+A L+ + E+ ++Q ++I L K Q A L ++ + G
Sbjct: 104 HKRHWSIALELFDMLREQPYYQPREDTYMKLIVLLGKSSQPLRAHEL-FNSIHEDGCGST 162
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS---SVYVKRQALKSMISGL-CEM 202
EL Y LI +FC+++ D+ + L++++N S ++ +K+++ L EM
Sbjct: 163 EL---YTALIAAFCQNNL---VDEALSILDEMMNLPSCQPDIFTYSTLIKALVDSLKFEM 216
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ-MESDGTRVDTVC 261
E L ++M + + P+ + I+ GYG+ G + ME+IV+ ME + D
Sbjct: 217 -----VELLFDKMAKRSIVPNTYTQNLILSGYGKAGRFDQMEKIVSSMMEGTTCKPDVWT 271
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
N V+S +GD ++ M W K GI T+N
Sbjct: 272 MNTVISVFGDKGQIDIMEKWYDKFCSFGIQPQRSTFN 308
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++ LC+ G+ +A ++ + M +KG + F YK ++ GY G L D+ + N M
Sbjct: 324 LNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLML 383
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
SDG D+ N+++ +Y L R + +M++ G+ V TY++V+ + I M
Sbjct: 384 SDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKM 442
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 81/185 (43%), Gaps = 11/185 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNS 181
K GQ +E +L +++ G+ + Y +ID F K D + D + + ++
Sbjct: 194 KSGQADE----LLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISP 249
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S Y +++ LC+ +AE ++ +M KG+ P + Y +IYGY G +
Sbjct: 250 DLSTY------NCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWK 303
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ R+ +M S G D V N +++S H ++ M G + +Y +L
Sbjct: 304 EAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIML 363
Query: 302 NSCST 306
N +T
Sbjct: 364 NGYAT 368
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 57/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G A + EMR +G+EP Y +I R+G ++D NQM G
Sbjct: 397 LIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQG 456
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ ++ + H +L + + +M + G+ + +N ++N+ + ++
Sbjct: 457 VAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQ 516
Query: 315 NSNDFPLSI 323
N DF +SI
Sbjct: 517 NIFDFTISI 525
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI FC H D + D +N+ + + +I+ LC++G+ +A+N
Sbjct: 464 YHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCF------NFIINNLCKLGRVMDAQN 517
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ + GL P+ Y ++ GY +G +E+ R+ + M S G + + V +++ Y
Sbjct: 518 IFDFTISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYC 577
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +++ GI S YN +L+
Sbjct: 578 KVGRIDEGLSLFREILHKGIKPSTTLYNIILHG 610
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 16/186 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC----KHDSKRGFDDTY 172
II L K G+ +A+ + T+S +G V+ Y L+D +C ++ R FD
Sbjct: 502 IINNLCKLGRVMDAQNIFDFTIS-IGLHPN--VMVYNTLMDGYCLVGKMENALRVFD--- 555
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
V S+ + ++++G C++G+ E +L E+ KG++PS Y I++
Sbjct: 556 ------VMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTLYNIILH 609
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G + ++M G +D ++VL ++ +L +++ +
Sbjct: 610 GLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFKNSCSDEAILLFKELHAMNVKI 669
Query: 293 SVRTYN 298
+ T N
Sbjct: 670 DITTLN 675
>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 748
Score = 68.2 bits (165), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 17/220 (7%)
Query: 102 TEESWF------QWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
T WF + +P + +I + G+ E + L E +S+ G + E+ Y
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVT--YT 437
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID +CK + ++ N++V + + ++I GLC+ G+ A L++
Sbjct: 438 TLIDVYCKAGE---MVNAFSLHNEMVQMGMTPNIVTYG--ALIDGLCKHGELDTANELLD 492
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR KGL+ + Y ++ G + G +E +++ +ME G D + V+ +Y
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLG 552
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
++ + LQ+M D G+ +V T+N ++N ++ ML+D
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNG-FCMLGMLED 591
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 149 VLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSSSVYVKRQALKSM- 195
++ Y LID CKH K+G N +VN QA+K M
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 196 -----------------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
I C +G +A L++EM +GL+P+ + ++ G+ LG
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+LED +R++ M G D + N ++ + N ++ ++M++ G+ TYN
Sbjct: 588 MLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYN 647
Query: 299 SVL 301
++
Sbjct: 648 ILI 650
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K G+ EAE ++ E +S+ + + Y LI F K R + + +
Sbjct: 334 IILLLCKIGKSFEAEKVLREMMSQKIIPDN---VVYTTLIHGFFKLGHVRTANKWFDEM- 389
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L S Y+ ++I G + G+ E +NL EM +GL+P Y +I Y +
Sbjct: 390 -LSKKISPDYI---TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + + N+M G + V ++ H EL L +M+ G+ +V
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505
Query: 297 YNSVLNS 303
YNS++N
Sbjct: 506 YNSMVNG 512
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 80 LLSPDTTHPRLSSLA-----FPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
+++ D+ + LS +A + +++ E WN II L + G+ +EA L+
Sbjct: 222 VVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLL 281
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-----R 189
++ + + + V+ Y +ID +C L + + + +K R
Sbjct: 282 MQMDFRSSTPD---VVSYSTVIDGYCH----------LGELKKALKLMDDMQIKGLKPNR 328
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
S+I LC++G+ EAE ++ EM + + P Y +I+G+ +LG + + ++
Sbjct: 329 YTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M S D + ++ +G ++ +M G+ TY ++++
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID++C+ D + L ++++ V +++G C +G + + L
Sbjct: 541 YTTVIDAYCRLGD---IDKAHKLLQEMLDRGLQPTV--VTFNVLMNGFCMLGMLEDGDRL 595
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG+ P Y ++ + + +I +M + G D+ N+++ +
Sbjct: 596 LGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCK 655
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
L ++M + G +V +YN+++
Sbjct: 656 ARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
Length = 1167
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 8/196 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q N ++ L K GQ + A +L+L+ + + R + Y +I+ +H +K+
Sbjct: 254 QPNKITYDNLVRGLCKMGQMDRA-SLLLKQMVR--DSHRPDTITYNLIIEGHFRHHNKK- 309
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D + L+++ N+ S V ++ MI GLC+ G+P +A +L+EEM KGL+P+ F Y
Sbjct: 310 --DAFRLLSEMENAGISPNVYTYSI--MIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVY 365
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I GY R G + I ++M D C N ++ + + +M++
Sbjct: 366 APLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQE 425
Query: 288 SGIPFSVRTYNSVLNS 303
G+ + TY+ +++
Sbjct: 426 RGLLPNEFTYSGLIHG 441
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 97/194 (50%), Gaps = 8/194 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ E+A L LE ++ G + V Y LI +C+ + + + ++
Sbjct: 333 MIHGLCQSGEPEKASDL-LEEMTTKGLKPNAFV--YAPLISGYCREGNVSLACEIFDKMT 389
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ VN +Y S+I GL ++G+ E+ +M+ +GL P+ F Y +I+GY +
Sbjct: 390 K-VNVLPDLY----CYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLK 444
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE E++V +M G + + V +L SY +++ ++ + M D G+ R
Sbjct: 445 NGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 504
Query: 297 YNSVLNSCSTIMSM 310
Y ++++ S+ +M
Sbjct: 505 YGILIHNLSSSGNM 518
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 77/152 (50%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ CK S+R ++ A L+++ S + + ++I G G EA +
Sbjct: 190 YGALINGLCK--SRRS-NEAKALLDEM--SCAELKPNVVVYANLIDGFMREGNADEAFKM 244
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I+EM G++P+ Y ++ G ++G ++ ++ QM D R DT+ N+++ +
Sbjct: 245 IKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFR 304
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H+ L +M+++GI +V TY+ +++
Sbjct: 305 HHNKKDAFRLLSEMENAGISPNVYTYSIMIHG 336
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y NLID F + + D+ + + ++V ++ V + +++ GLC+MGQ A
Sbjct: 222 VVVYANLIDGFMREGNA---DEAFKMIKEMV--AAGVQPNKITYDNLVRGLCKMGQMDRA 276
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+++M P Y II G+ R +D R++++ME+ G + ++++
Sbjct: 277 SLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHG 336
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + L++M G+ + Y +++
Sbjct: 337 LCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISG 371
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 79/175 (45%), Gaps = 8/175 (4%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA +L + K GS V Y +LI CK + + + L+++ S V
Sbjct: 519 EAAFRVLSEIEKNGSVPD--VHVYSSLISGLCKTADR---EKAFGILDEM--SKKGVDPN 571
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++I GLC+ G A N+ + KGL P+ Y +I G ++G + + + N
Sbjct: 572 IVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYN 631
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M + G D +++ + +L + + +++M G S+ ++N++++
Sbjct: 632 EMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDG 685
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 86/214 (40%), Gaps = 33/214 (15%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY-ARLNQLVNS 181
K G E AE L+ L G + +++ Y +L++S+ K D T+ + L+Q V
Sbjct: 444 KNGDLESAEQLVQRMLDT-GLKPNDVI--YIDLLESYFKSDDIEKVSSTFKSMLDQGVML 500
Query: 182 SSSVY----------------------VKRQA-------LKSMISGLCEMGQPHEAENLI 212
+ +Y +++ S+ISGLC+ +A ++
Sbjct: 501 DNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGIL 560
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+EM KG++P+ Y +I G + G + + N + + G + V ++
Sbjct: 561 DEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKV 620
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++S +M +GI Y+ + CS+
Sbjct: 621 GDISNAFYLYNEMLATGITPDAFVYSVLTTGCSS 654
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 11/156 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+++CK R FD L ++ + +I+GLC G EA
Sbjct: 117 VYTYSTLIEAYCK---VREFDTAKKVLVEMRERGCGL--NTVTYNVLIAGLCRSGAVEEA 171
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++M GL P GF Y +I G + + + ++++M + + V ++
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 231
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ G+ +E +M+ ++M +G+ + TY++++
Sbjct: 232 FMREGNADEAFKMI---KEMVAAGVQPNKITYDNLV 264
>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g05670, mitochondrial-like [Cucumis sativus]
Length = 748
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 105/220 (47%), Gaps = 17/220 (7%)
Query: 102 TEESWF------QWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
T WF + +P + +I + G+ E + L E +S+ G + E+ Y
Sbjct: 381 TANKWFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVT--YT 437
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID +CK + ++ N++V + + ++I GLC+ G+ A L++
Sbjct: 438 TLIDVYCKAGE---MVNAFSLHNEMVQMGMTPNIVTYG--ALIDGLCKHGELDTANELLD 492
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR KGL+ + Y ++ G + G +E +++ +ME G D + V+ +Y
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLG 552
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
++ + LQ+M D G+ +V T+N ++N ++ ML+D
Sbjct: 553 DIDKAHKLLQEMLDRGLQPTVVTFNVLMNG-FCMLGMLED 591
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 30/183 (16%)
Query: 149 VLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSSSVYVKRQALKSM- 195
++ Y LID CKH K+G N +VN QA+K M
Sbjct: 468 IVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMK 527
Query: 196 -----------------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
I C +G +A L++EM +GL+P+ + ++ G+ LG
Sbjct: 528 EMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLG 587
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+LED +R++ M G D + N ++ + N ++ ++M++ G+ TYN
Sbjct: 588 MLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYN 647
Query: 299 SVL 301
++
Sbjct: 648 ILI 650
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K G+ EAE ++ E +S+ + + Y LI F K R + + +
Sbjct: 334 IILLLCKIGKSFEAEKVLREMMSQKIIPDN---VVYTTLIHGFFKLGHVRTANKWFDEM- 389
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L S Y+ ++I G + G+ E +NL EM +GL+P Y +I Y +
Sbjct: 390 -LSKKISPDYI---TYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCK 445
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + + N+M G + V ++ H EL L +M+ G+ +V
Sbjct: 446 AGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCI 505
Query: 297 YNSVLNS 303
YNS++N
Sbjct: 506 YNSMVNG 512
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 100/233 (42%), Gaps = 23/233 (9%)
Query: 80 LLSPDTTHPRLSSLA-----FPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
+++ D+ + LS +A + +++ E WN II L + G+ +EA L+
Sbjct: 222 VVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLL 281
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-----R 189
++ + + + V+ Y +ID +C L + + + +K R
Sbjct: 282 MQMDFRSSTPD---VVSYSTVIDGYCH----------LGELKKALKLMDDMQIKGLKPNR 328
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
S+I LC++G+ EAE ++ EM + + P Y +I+G+ +LG + + ++
Sbjct: 329 YTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDE 388
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M S D + ++ +G ++ +M G+ TY ++++
Sbjct: 389 MLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLID 441
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID++C+ D + L ++++ V +++G C +G + + L
Sbjct: 541 YTTVIDAYCRLGD---IDKAHKLLQEMLDRGLQPTV--VTFNVLMNGFCMLGMLEDGDRL 595
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG+ P Y ++ + + +I +M + G D+ N+++ +
Sbjct: 596 LGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCK 655
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
L ++M + G +V +YN+++
Sbjct: 656 ARNLKEAWFLYKEMIEKGYVPTVTSYNALI 685
>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
Length = 798
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 14/236 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQG 125
+P + NAL L + + S A L + +T + + +P +V+ II K+G
Sbjct: 162 TPDVFSYNALIKGLCVE----KKSQEALELLLHMTADGGYNCSPNVVSYSTIIDGFFKEG 217
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
+ ++A L E + G V+ Y +LID CK + + A L + + V
Sbjct: 218 EVDKAYFLFDEMI---GQGFPPDVVTYSSLIDGLCK---AQAMNKAEAILQHMFDKG--V 269
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ MI G C +GQ EA L+++M GL+P Y +I Y ++G +
Sbjct: 270 MPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARS 329
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + M G + ++ +++L Y L + L M GIPF R +N ++
Sbjct: 330 VFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILI 385
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 41/181 (22%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+ +++ LC+ G+ EA++ + + G++P+ Y +I GY +G +++ + ++M
Sbjct: 486 MNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMV 545
Query: 252 SDGTRVDTVCSNMVLSSYGDHNEL---------------------SRMVL---------- 280
S G R D+ N +L+ Y + + S ++L
Sbjct: 546 SIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIV 605
Query: 281 ----WLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSNDFPLSILELTEVL 330
KM D G + TYN+VL NSC + M +DL S +F L + V+
Sbjct: 606 AARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVI 665
Query: 331 N 331
N
Sbjct: 666 N 666
>gi|168034142|ref|XP_001769572.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679114|gb|EDQ65565.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 78/338 (23%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV--KRQALK-------SMISGL 199
VL Y LID++ K A ++Q ++S++V KR LK S+I
Sbjct: 480 VLTYSALIDAYSK-----------AGMHQ---DATSIFVEFKRAGLKPDVVLYSSLIDSC 525
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-----VNQMESDG 254
C+ G +A L++EM G++P+ Y +I YGR G ++++E +N G
Sbjct: 526 CKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDAYGRNGQVDNVEAAKGNMPINVFNKVG 585
Query: 255 TR-VDTVCSNMV-LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS--- 309
R + +C + + DH + V +M+ G+ +V T++++LN+CS S
Sbjct: 586 DRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQQFGLKPNVVTFSAILNACSRCSSLQE 645
Query: 310 ------------------------------------MLQDLNSNDFPLSIL---ELTEVL 330
+ ++ D+ LT+VL
Sbjct: 646 ASVLLEQMRFFDSWVYGIAHGLLMGLREHVWVEAQRLFDEIARMDYATGAAFYNALTDVL 705
Query: 331 -----NEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRF 385
+ VV + V + A + LDLH M +G+A ++ W+ ++R
Sbjct: 706 WHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCLDLHLMSVGAAQAMLHVWLLDLRA-L 764
Query: 386 NNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMV 423
+ H +P ++++ G GKHS V G S+VK V+ ++
Sbjct: 765 VWDGHALPRVLSILTGWGKHSKVAGFSTVKRAVESRLL 802
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 6/168 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y LID+ CK + + +L N S +V +MI G ++G EA
Sbjct: 340 IFTYNTLIDAVCKGGQMELAASIMSSM-RLKNISPNVVT----YSTMIDGYGKLGCFEEA 394
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +M+ G+ P Y +I Y +LG +D ME G + D V N ++ +
Sbjct: 395 IGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDMERVGLKADVVTYNALIDA 454
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
YG + KMK G+ +V TY++++++ S M QD S
Sbjct: 455 YGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSK-AGMHQDATS 501
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHD--SKRGFDDTYARLNQLVNSSSSVY-VK 188
+ +++ KLG E E + Y ++ +S + D S D YA+L + ++ ++ ++
Sbjct: 379 STMIDGYGKLGCFE-EAIGLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALTACKDME 437
Query: 189 RQALKS-------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
R LK+ +I + G+ +A L ++M+ +GL P+ Y +I Y + G+ +
Sbjct: 438 RVGLKADVVTYNALIDAYGKQGKYKDAAGLFDKMKAEGLVPNVLTYSALIDAYSKAGMHQ 497
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D I + + G + D V + ++ S + V+ LQ+M +GI ++ TYNS++
Sbjct: 498 DATSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 557
Query: 302 NS 303
++
Sbjct: 558 DA 559
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/233 (18%), Positives = 96/233 (41%), Gaps = 20/233 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++ K + D +++ + + ++I + G +A
Sbjct: 445 VVTYNALIDAYGKQGK---YKDAAGLFDKM--KAEGLVPNVLTYSALIDAYSKAGMHQDA 499
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ E + GL+P Y +I + GL+ED ++ +M G + + V N ++ +
Sbjct: 500 TSIFVEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDA 559
Query: 269 YGDHNELSRM--------VLWLQKMKDSGIPFSVRTYNSVLNSCS-----TIMSMLQDLN 315
YG + ++ + + K+ D +T S N+ +S+ ++
Sbjct: 560 YGRNGQVDNVEAAKGNMPINVFNKVGDRSTEIICKTLTSQQNANDHTGVLAAVSVFHEMQ 619
Query: 316 SNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLG 368
+++ + +LN S L+++SVL E M++ HG+ +G
Sbjct: 620 QFGLKPNVVTFSAILN--ACSRCSSLQEASVLLEQMRFFDSWVYGIAHGLLMG 670
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 83/193 (43%), Gaps = 32/193 (16%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
++++ TL +LG E L +F K GF + + +V++ R+A
Sbjct: 203 SIMISTLGRLGKVEIALDVF---------NRAQKAGFGNNVYAYSAMVSAYGRSGRCREA 253
Query: 192 LK-----------------SMISGLCEMGQP--HEAENLIEEMRVKGLEPSGFEYKCIIY 232
LK + I C G +A ++ EEM+ +G+EP + +I
Sbjct: 254 LKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKKALDIFEEMQKEGVEPDRITFNSLIA 313
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY--GDHNELSRMVLWLQKMKDSGI 290
R L ED +R+ +M+ G D N ++ + G EL+ ++ ++K+ I
Sbjct: 314 VCSRGSLWEDSQRVFAEMQRRGIEQDIFTYNTLIDAVCKGGQMELAASIMSSMRLKN--I 371
Query: 291 PFSVRTYNSVLNS 303
+V TY+++++
Sbjct: 372 SPNVVTYSTMIDG 384
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/247 (24%), Positives = 106/247 (42%), Gaps = 41/247 (16%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+R+ E +P +VA +I K+G +A L E + + + + Y +++
Sbjct: 205 LRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPD---FVTYSSVV 261
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSS---------------SSVYVKRQALK-------- 193
+ CK R D A L Q+VN SS ++A++
Sbjct: 262 HALCK---ARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 318
Query: 194 ---------SMISG-LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
SM+ G LC+ G+ EA ++ + M +KG P+ F Y ++ GY G L DM
Sbjct: 319 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDM 378
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + M DG D N+++ +Y + L + ++ +M+D G+ V TY +V+ +
Sbjct: 379 TDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 438
Query: 304 CSTIMSM 310
I M
Sbjct: 439 LCRIGKM 445
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++F+ ++I++ CK D++ FD T +N ++ ++ VY ++ G C +G+
Sbjct: 499 IVFFSSIINNLCKLGRVMDAQNIFDLT---VNVGLHPTAVVY------SMLMDGYCLVGK 549
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M G+EP+ Y ++ GY ++G +++ + +M G + T+ N+
Sbjct: 550 MEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSND 318
++ + + +M +SGI + TYN VL N C + + ++L + +
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMN 669
Query: 319 FPLSILELTEVL 330
++I+ L ++
Sbjct: 670 VKINIITLNTMI 681
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 18/233 (7%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 195 QGKSGQADDL-LRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPD 253
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S++ LC+ +AE + +M KG+ P+ + Y +IYGY G ++
Sbjct: 254 FV-----TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V +M++ S + ++ M G +V +Y +LN
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNG 368
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
C M+ L DL D + VL +K + +LD+AM
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPDIYTFNVL-------IKAYANCGMLDKAM 414
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 58/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y+ +I R+G ++D NQM G
Sbjct: 400 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 459
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 460 VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 520 NIFDLTVNV 528
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++I+ LC +G+ +A +M +G+ P + Y C+I G+ G L + +++++ +
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMN 492
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+G +D V + ++ N L + L ++ D+ F + T N L+ + + SML
Sbjct: 493 NGMHLDIVFFSSII------NNLCK----LGRVMDAQNIFDL-TVNVGLHPTAVVYSMLM 541
Query: 313 D 313
D
Sbjct: 542 D 542
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 17/186 (9%)
Query: 155 LIDSFCKHDS---KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
L+ S CK+ R DT A Q N S M++G G + +L
Sbjct: 330 LMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTI--------MLNGYATKGCLVDMTDL 381
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M G+ P + + +I Y G+L+ I N+M G + D V V+++
Sbjct: 382 FDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCR 441
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ------DLNSNDFPLSILE 325
++ + +M D G+ Y+ ++ T S+L+ ++ +N L I+
Sbjct: 442 IGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVF 501
Query: 326 LTEVLN 331
+ ++N
Sbjct: 502 FSSIIN 507
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 429 VVTYRTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKA 483
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G V +M++
Sbjct: 484 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI + Y +++N I
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI 582
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI+G+ + + EA++L + GL P
Sbjct: 653 RCFDEAIFLFKEL--RAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVV 710
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G D+ N V+ NE+ R +L K+
Sbjct: 711 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770
Query: 286 KD 287
+
Sbjct: 771 DE 772
>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
Length = 920
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G E+A ILE+L + G V+ Y L+ +CK G + R+ + + +
Sbjct: 267 GWTEDARR-ILESLQRKGLSPN--VVTYTLLVKGYCKD----GRMEEAERVVKEMKETGD 319
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ V A MI+G C+ G+ +A + EMR G+ + F Y +I G +LG +E+++
Sbjct: 320 IVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQ 379
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+++ +ME G R D N ++ Y + + + M +G+ + TYN++L
Sbjct: 380 KVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439
Query: 305 STIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDL 362
++ ++ L L L L + E+S S++LD K E L+L
Sbjct: 440 CSLHAIDDALR-----LWFLMLKRGVAPNEISC------STLLDGLFKAGKTEQALNL 486
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +++ C MG +A ++E ++ KGL P+ Y ++ GY + G +E+ ER+V +M
Sbjct: 255 AYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314
Query: 251 ESDG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G VD V M+++ Y + +M+D+GI ++ YN+++N
Sbjct: 315 KETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMING 368
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +A++L E +R K P F Y +I+G G +++ + + M S G
Sbjct: 706 IIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG 765
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + N ++ +LSR V K++ GI + TYN++++
Sbjct: 766 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR---------- 166
+I L K G+ EE + +L+ + +G R + Y LID +C+ S R
Sbjct: 365 MINGLCKLGRMEEVQK-VLQEMEDVGMRPDKYS--YNTLIDGYCREGSMRKAFEMCRMMV 421
Query: 167 --GFDDTYARLNQLVNSSSSVYVKRQALK------------------SMISGLCEMGQPH 206
G T N L+ S++ AL+ +++ GL + G+
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTE 481
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A NL +E +GL + + +I G ++G + + E ++++M+ D++ +
Sbjct: 482 QALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLF 541
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +L + KM+ G SV +NS +
Sbjct: 542 DGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ EAE L L+ + +L L Y L D +CK ++
Sbjct: 505 VINGLCKIGRMAEAEEL-LDRMKELRCPPDSLT--YRTLFDGYCKLGQLGTATHLMNKME 561
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L + S + S I+G Q H+ ++ EM +GL P+ Y +I G+ +
Sbjct: 562 HLGFAPSV-----EMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
G L + + +M ++G + + ++S + ++ L LQK+
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ G+ A NL +++ KG+ P+G Y +I Y + G + ++ +M +
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE 834
Query: 254 G 254
G
Sbjct: 835 G 835
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 61/119 (51%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ LC+ G+ EA ++ + M +KG P F YK ++ GY G L DM + + M
Sbjct: 331 LNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLML 390
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
DG D ++++ +Y + L + ++ +M+D G+ V TY +V+ + I M
Sbjct: 391 GDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKM 449
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 93/233 (39%), Gaps = 18/233 (7%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 199 QGKSGQADDL-LRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLFKEMVQ-----R 252
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ S++ LC+ +AE + +M KG+ P + Y +IYGY G ++
Sbjct: 253 GIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 312
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V NM++ S + ++ M G V +Y +LN
Sbjct: 313 VRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNG 372
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
C M+ L DL D + VL +K + +LD+AM
Sbjct: 373 YATKGCLVDMTDLFDLMLGDGIAPDIYTFSVL-------IKAYANCGMLDKAM 418
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 433 VVTYTTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKA 487
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V +M++
Sbjct: 488 KELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDG 547
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 548 YCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKI 586
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 6/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
++C LI FC H S + + +++N+ + + S+I+ LC++G+ +A+N
Sbjct: 471 YHC-LIQGFCTHGSLLKAKEL---ILEIMNNGMRLDI--VFFSSIINNLCKLGRIMDAQN 524
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ + G P Y ++ GY +G +E R+ + M S G + V +++ Y
Sbjct: 525 IFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYC 584
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++M GI S YN +++
Sbjct: 585 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC----KHDSKRGFDD 170
+ II L K G+ +A+ I + +G +V Y L+D +C + R FD
Sbjct: 507 SSIINNLCKLGRIMDAQN-IFDLTVNVGQHPDAVV--YSMLMDGYCLVGKMEKALRVFD- 562
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
A ++ + + VY ++++G C++G+ E +L EM KG++PS Y I
Sbjct: 563 --AMVSAGIEPNVVVY------GTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNII 614
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I G G + ++M G ++ N+VL + + + ++++ +
Sbjct: 615 IDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNV 674
Query: 291 PFSVRTYNSVL 301
+ T N+++
Sbjct: 675 KIDIITLNTMI 685
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 57/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y +I R+G ++D NQM G
Sbjct: 404 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQG 463
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 464 VAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQ 523
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 524 NIFDLTVNV 532
>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
Length = 939
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 108/238 (45%), Gaps = 18/238 (7%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G E+A ILE+L + G V+ Y L+ +CK G + R+ + + +
Sbjct: 267 GWTEDARR-ILESLQRKGLSPN--VVTYTLLVKGYCKD----GRMEEAERVVKEMKETGD 319
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ V A MI+G C+ G+ +A + EMR G+ + F Y +I G +LG +E+++
Sbjct: 320 IVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQ 379
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+++ +ME G R D N ++ Y + + + M +G+ + TYN++L
Sbjct: 380 KVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGF 439
Query: 305 STIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDL 362
++ ++ L L L L + E+S S++LD K E L+L
Sbjct: 440 CSLHAIDDALR-----LWFLMLKRGVAPNEISC------STLLDGLFKAGKTEQALNL 486
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +++ C MG +A ++E ++ KGL P+ Y ++ GY + G +E+ ER+V +M
Sbjct: 255 AYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEM 314
Query: 251 ESDG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G VD V M+++ Y + +M+D+GI ++ YN+++N
Sbjct: 315 KETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMING 368
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +A++L E +R K P F Y +I+G G +++ + + M S G
Sbjct: 706 IIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG 765
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + N ++ +LSR V K++ GI + TYN++++
Sbjct: 766 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLID 813
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR---------- 166
+I L K G+ EE + +L+ + +G R + Y LID +C+ S R
Sbjct: 365 MINGLCKLGRMEEVQK-VLQEMEDVGMRPDKYS--YNTLIDGYCREGSMRKAFEMCRMMV 421
Query: 167 --GFDDTYARLNQLVNSSSSVYVKRQALK------------------SMISGLCEMGQPH 206
G T N L+ S++ AL+ +++ GL + G+
Sbjct: 422 RNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTE 481
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A NL +E +GL + + +I G ++G + + E ++++M+ D++ +
Sbjct: 482 QALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLF 541
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +L + KM+ G SV +NS +
Sbjct: 542 DGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 52/113 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G G EA +L + M GL P+ Y +IYG + G L + N+++S
Sbjct: 740 SLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSK 799
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G + + N ++ Y + + QKM + GI +V TY+ ++ T
Sbjct: 800 GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCT 852
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ G+ A NL +++ KG+ P+G Y +I Y + G + ++ +M +
Sbjct: 775 SLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE 834
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + ++++ + + L +M ++ + + TY ++++
Sbjct: 835 GIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHG 884
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID +CK + + ++V V ++ +I GLC G EA L
Sbjct: 808 YNTLIDEYCKEGKT---TEAFKLKQKMVEEGIQPTVITYSI--LIYGLCTQGYMEEAIKL 862
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++M ++P+ Y +I+GY + G +E++ ++ ++M G
Sbjct: 863 LDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRG 905
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 8/169 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ EAE L L+ + +L L Y L D +CK ++
Sbjct: 505 VINGLCKIGRMAEAEEL-LDRMKELRCPPDSLT--YRTLFDGYCKLGQLGTATHLMNKME 561
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L + S + S I+G Q H+ ++ EM +GL P+ Y +I G+ +
Sbjct: 562 HLGFAPSV-----EMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCK 616
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
G L + + +M ++G + + ++S + ++ L LQK+
Sbjct: 617 EGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKL 665
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 110/248 (44%), Gaps = 43/248 (17%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+R+ E +P +VA +I K+G +A L E + + +LV Y +++
Sbjct: 207 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVT-YSSVV 263
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNS---------SSSVY-----------------VKRQ 190
+ CK R D A L Q+VN ++ +Y ++RQ
Sbjct: 264 HALCK---ARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ 320
Query: 191 -------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
AL +++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM
Sbjct: 321 SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDM 380
Query: 244 ERIVNQMESDGTRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + M DG +C+ N+++ +Y + L + ++ +M+D G+ V TY +V+
Sbjct: 381 TDLFDLMLGDGI-APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIA 439
Query: 303 SCSTIMSM 310
+ I M
Sbjct: 440 ALCRIGKM 447
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 19/192 (9%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++F+ ++I++ CK D++ FD T +N ++ + VY ++ G C +G+
Sbjct: 501 IVFFGSIINNLCKLGRVMDAQNIFDLT---VNVGLHPDAVVY------NMLMDGYCLVGK 551
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M G+EP+ Y ++ GY ++G +++ + +M G + T+ N+
Sbjct: 552 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNI 611
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSND 318
++ + + +M +SGI + TY+ VL N C + + ++L + +
Sbjct: 612 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 671
Query: 319 FPLSILELTEVL 330
+ I+ L ++
Sbjct: 672 VKIDIITLNTMI 683
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 431 VVTYMTVIAALCRIGK---MDDAMEKFNQMIDQG--VVPDKYAYHCLIQGFCTHGSLLKA 485
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V NM++
Sbjct: 486 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 545
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 546 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKI 584
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 88/398 (22%), Positives = 150/398 (37%), Gaps = 62/398 (15%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNA 76
CC R R L +L + G R D+ AS L+ F + AL+
Sbjct: 122 CCT-RAHRPELALAFFGQLLRTGLRV----------DAIIASHLLKGFCEAKRTDEALDI 170
Query: 77 LSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILE 136
L H P L + F +N L + L QG+ +A+ L L
Sbjct: 171 LLH------RTPELGCV----------PDVFSYNILLKS-----LCNQGKSGQADDL-LR 208
Query: 137 TLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196
+++ G+ V+ Y +ID F K D + + Q + S++
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-----RGIPPDLVTYSSVV 263
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
LC+ +AE + +M KG+ P + Y +IYGY G ++ R+ +M
Sbjct: 264 HALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSIL 323
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-----SCSTIMSML 311
D V N ++ S + ++ M G V +Y +LN C M+ L
Sbjct: 324 PDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDL 383
Query: 312 QDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGM--HLGS 369
DL D ++ VL +K + +LD+AM + ++ HG+ H+ +
Sbjct: 384 FDLMLGDGIAPVICTFNVL-------IKAYANCGMLDKAMIIFN---EMRDHGVKPHVVT 433
Query: 370 AYFII-----LQWMDEMRNRFNN--EKHVIPAEITVVC 400
+I + MD+ +FN ++ V+P + C
Sbjct: 434 YMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
++C LI FC H S + +++++N+ + + S+I+ LC++G+ +A+N
Sbjct: 469 YHC-LIQGFCTHGSLLKAKEL---ISEIMNNGMRLDI--VFFGSIINNLCKLGRVMDAQN 522
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ + GL P Y ++ GY +G +E R+ + M S G + V +++ Y
Sbjct: 523 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYC 582
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++M GI S YN +++
Sbjct: 583 KIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 615
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI+G+ + + EA++L + GL P
Sbjct: 655 RCFDEAIFLFKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 712
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G D+ N V+ NE+ R +L K+
Sbjct: 713 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 772
Query: 286 KD 287
+
Sbjct: 773 DE 774
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 56/129 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y +I R+G ++D NQM G
Sbjct: 402 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQG 461
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + + S++N+ + ++
Sbjct: 462 VVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQ 521
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 522 NIFDLTVNV 530
>gi|224065693|ref|XP_002301924.1| predicted protein [Populus trichocarpa]
gi|222843650|gb|EEE81197.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 66/125 (52%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V S + VK L ++I GL G+ EAE + EEMR GL+P Y ++ GY + G
Sbjct: 296 VVQGSGLSVKTATLVTVIWGLGNCGRTEEAEAIFEEMRDNGLQPRTRAYNALLRGYVKAG 355
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
LL D E +V++ME G + ++++ +YG+ + L++M+ S + + ++
Sbjct: 356 LLRDAEFVVSEMERSGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFS 415
Query: 299 SVLNS 303
+L S
Sbjct: 416 RILAS 420
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S Q N + + I+A +G+ ++ +L + G R + FY LID+F K
Sbjct: 403 EASNVQPNAYVFSRILASYRDKGEWQKTFQ-VLREMEDSGVRPDRI--FYNVLIDTFGKF 459
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ D A ++++ S + +++ C+ G+ AE L EEM KG P
Sbjct: 460 NC---LDHAMATFDRML--SEGIEPDTITWNTLVDCHCKAGKHDRAEELFEEMMEKGYLP 514
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ +I +G +D++ ++ M S G + V ++ YG + L
Sbjct: 515 CNTTFNIMINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECL 574
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
MK +G+ S YN++LN+
Sbjct: 575 DDMKAAGLKPSSTMYNALLNA 595
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 66/142 (46%), Gaps = 6/142 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ + + + +NL+ MR +GL P+ Y +I YG+ G +D ++ M++ G
Sbjct: 522 MINSFGDQERWDDVKNLLTNMRSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAG 581
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IM 308
+ + N +L++Y + V M+D G+ S+ NS++N+
Sbjct: 582 LKPSSTMYNALLNAYAQRGLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAF 641
Query: 309 SMLQDLNSNDFPLSILELTEVL 330
+LQ + ND ++ T ++
Sbjct: 642 VVLQYMKENDLKPDVVTYTTLM 663
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L G+ EEAE I E + G + R Y L+ + K R + + +
Sbjct: 312 VIWGLGNCGRTEEAEA-IFEEMRDNGLQPRTRA--YNALLRGYVKAGLLRDAEFVVSEME 368
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S V Q +I + A +++EM ++P+ + + I+ Y
Sbjct: 369 R-----SGVLPNEQTYSLLIDAYGNAERWESARIVLKEMEASNVQPNAYVFSRILASYRD 423
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + +++ +ME G R D + N+++ ++G N L + +M GI T
Sbjct: 424 KGEWQKTFQVLREMEDSGVRPDRIFYNVLIDTFGKFNCLDHAMATFDRMLSEGIEPDTIT 483
Query: 297 YNSVLN 302
+N++++
Sbjct: 484 WNTLVD 489
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-----LIDSFCKHDSKRGFDDTYARLNQ 177
K G+ + AE L E + K CN +I+SF D +R +DD L
Sbjct: 493 KAGKHDRAEELFEEMMEK--------GYLPCNTTFNIMINSF--GDQER-WDDVKNLLTN 541
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ S + ++I + G+ +A +++M+ GL+PS Y ++ Y +
Sbjct: 542 M--RSQGLLPNAVTYTTLIDIYGKSGRFDDAIECLDDMKAAGLKPSSTMYNALLNAYAQR 599
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
GL + M DG + + N +++++G + LQ MK++ + V TY
Sbjct: 600 GLSDQAVSAFWAMRDDGLKPSLLALNSLINAFGKDRRDVEAFVVLQYMKENDLKPDVVTY 659
Query: 298 NSVLNS 303
+++ +
Sbjct: 660 TTLMKA 665
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM + + M
Sbjct: 340 LSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML 399
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
DG D N+++ +Y + L + ++ +M+D G+ V TY +V+ + I M
Sbjct: 400 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKM 458
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 93/193 (48%), Gaps = 19/193 (9%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++F+ ++I++ CK D++ FD T +N ++ + VY ++ G C +G+
Sbjct: 512 IVFFSSIINNLCKLGRVMDAQNIFDLT---VNVGLHPDAVVY------SMLMDGYCLVGK 562
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M G+EP+ Y ++ GY ++G +++ + +M G + T+ ++
Sbjct: 563 MEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 622
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSND 318
++ + +M +SGI + TYN VL N C + + ++L + +
Sbjct: 623 IIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 682
Query: 319 FPLSILELTEVLN 331
++I+ L +++
Sbjct: 683 VKINIITLNTMID 695
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 442 VVTYRTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKA 496
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V +M++
Sbjct: 497 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDG 556
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 557 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKI 595
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 26/289 (8%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 208 QGKSGQADDL-LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-----R 261
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ S++ LC+ +AE + +M K + P+ + Y +IYGY G ++
Sbjct: 262 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 321
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V +M++ S + ++ M G V +YN +LN
Sbjct: 322 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 381
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM-----KW 353
C M+ L DL D VL +K + +LD+AM
Sbjct: 382 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL-------IKAYANCGMLDKAMIIFNEMR 434
Query: 354 DSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNN--EKHVIPAEITVVC 400
D G K D+ A + MD+ +FN ++ V P + C
Sbjct: 435 DHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y+ +I R+G ++D NQM G
Sbjct: 413 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 472
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D N ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 473 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 532
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 533 NIFDLTVNV 541
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 11/183 (6%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+ S CK+ + D + + + + V+ + M++G G + +L +
Sbjct: 343 LMGSLCKYGKIKEARDVFDTM-AMKGQNPDVF----SYNIMLNGYATKGCLVDMTDLFDL 397
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P + + +I Y G+L+ I N+M G + D V V+++ +
Sbjct: 398 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 457
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ------DLNSNDFPLSILELTE 328
+ + +M D G+ YN ++ T S+L+ ++ +N L I+ +
Sbjct: 458 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 517
Query: 329 VLN 331
++N
Sbjct: 518 IIN 520
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++I+ LC +G+ +A +M +G+ P + Y C+I G+ G L + +++++ +
Sbjct: 446 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 505
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+G +D V + ++ N L + L ++ D+ F + T N L+ + + SML
Sbjct: 506 NGMHLDIVFFSSII------NNLCK----LGRVMDAQNIFDL-TVNVGLHPDAVVYSMLM 554
Query: 313 D 313
D
Sbjct: 555 D 555
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM + + M
Sbjct: 327 LSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML 386
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
DG D N+++ +Y + L + ++ +M+D G+ V TY +V+ + I M
Sbjct: 387 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKM 445
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 429 VVTYRTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKA 483
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V +M++
Sbjct: 484 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDG 543
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKI 582
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI FC H S + +L++ ++ +++ S+I+ LC++G+ +A+
Sbjct: 467 YNCLIQGFCTHGS-------LLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
N+ + GL P Y ++ GY +G +E R+ + M S G + V +++ Y
Sbjct: 520 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 579
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++M GI S Y+ +++
Sbjct: 580 CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDG 613
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 26/289 (8%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 195 QGKSGQADDL-LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-----R 248
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ S++ LC+ +AE + +M K + P+ + Y +IYGY G ++
Sbjct: 249 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 308
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V +M++ S + ++ M G V +YN +LN
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 368
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM-----KW 353
C M+ L DL D VL +K + +LD+AM
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL-------IKAYANCGMLDKAMIIFNEMR 421
Query: 354 DSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNN--EKHVIPAEITVVC 400
D G K D+ A + MD+ +FN ++ V P + C
Sbjct: 422 DHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y+ +I R+G ++D NQM G
Sbjct: 400 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 459
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D N ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 460 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 519
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 520 NIFDLTVNV 528
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 86/195 (44%), Gaps = 16/195 (8%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC----KHDSKRGF 168
+ II L K G+ +A+ I + +G +V Y L+D +C + R F
Sbjct: 501 FFSSIINNLCKLGRVMDAQN-IFDLTVNVGLHPDAVV--YSMLMDGYCLVGKMEKALRVF 557
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D A ++ + + VY ++++G C++G+ E +L EM +G++PS Y
Sbjct: 558 D---AMVSAGIEPNVVVYC------TLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYS 608
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
II G + G + ++M G +D N+VL + + ++++
Sbjct: 609 IIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAM 668
Query: 289 GIPFSVRTYNSVLNS 303
+ ++ T N++++
Sbjct: 669 NVKINIITLNTMIDG 683
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 11/183 (6%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+ S CK+ + D + + + + V+ + M++G G + +L +
Sbjct: 330 LMGSLCKYGKIKEARDVFDTM-AMKGQNPDVF----SYNIMLNGYATKGCLVDMTDLFDL 384
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P + + +I Y G+L+ I N+M G + D V V+++ +
Sbjct: 385 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 444
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ------DLNSNDFPLSILELTE 328
+ + +M D G+ YN ++ T S+L+ ++ +N L I+ +
Sbjct: 445 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 504
Query: 329 VLN 331
++N
Sbjct: 505 IIN 507
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 62/121 (51%), Gaps = 11/121 (9%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++I+ LC +G+ +A +M +G+ P + Y C+I G+ G L + +++++ +
Sbjct: 433 RTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMN 492
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+G +D V + ++ N L + L ++ D+ F + T N L+ + + SML
Sbjct: 493 NGMHLDIVFFSSII------NNLCK----LGRVMDAQNIFDL-TVNVGLHPDAVVYSMLM 541
Query: 313 D 313
D
Sbjct: 542 D 542
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI G+ + + EA++L + L PS
Sbjct: 653 RCFDEAIFLFKEL--RAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVV 710
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G ++ N V+ NE+ R +L K+
Sbjct: 711 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 770
Query: 286 KD 287
+
Sbjct: 771 DE 772
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM + + M
Sbjct: 330 LSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML 389
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
DG D N+++ +Y + L + ++ +M+D G+ V TY +V+ + I M
Sbjct: 390 GDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKM 448
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 94/193 (48%), Gaps = 19/193 (9%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++F+ ++I++ CK D++ FD T +N ++ + VY ++ G C +G+
Sbjct: 502 IVFFSSIINNLCKLGRVMDAQNIFDLT---VNVGLHPDAVVY------NMLMDGYCLVGK 552
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M G+EP+ Y ++ GY ++G +++ + +M G + T+ ++
Sbjct: 553 MEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSI 612
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSMLQDLNSND 318
++ + + +M +SGI + TYN VL N C + + ++L + +
Sbjct: 613 IIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN 672
Query: 319 FPLSILELTEVLN 331
++I+ L +++
Sbjct: 673 VKINIITLNTMID 685
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 432 VVTYRTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYNCLIQGFCTHGSLLKA 486
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V NM++
Sbjct: 487 KELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 546
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI +V Y +++N I
Sbjct: 547 YCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKI 585
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 112/289 (38%), Gaps = 26/289 (8%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 198 QGKSGQADDL-LRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ-----R 251
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ S++ LC+ +AE + +M K + P+ + Y +IYGY G ++
Sbjct: 252 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 311
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V +M++ S + ++ M G V +YN +LN
Sbjct: 312 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 371
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM-----KW 353
C M+ L DL D VL +K + +LD+AM
Sbjct: 372 YATKGCLVDMTDLFDLMLGDGIAPDFYTFNVL-------IKAYANCGMLDKAMIIFNEMR 424
Query: 354 DSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNN--EKHVIPAEITVVC 400
D G K D+ A + MD+ +FN ++ V P + C
Sbjct: 425 DHG-VKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/129 (20%), Positives = 58/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y+ +I R+G ++D NQM G
Sbjct: 403 LIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQG 462
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D N ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 463 VAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQ 522
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 523 NIFDLTVNV 531
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/183 (19%), Positives = 77/183 (42%), Gaps = 11/183 (6%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+ S CK+ + D + + + + V+ + M++G G + +L +
Sbjct: 333 LMGSLCKYGKIKEARDVFDTM-AMKGQNPDVF----SYNIMLNGYATKGCLVDMTDLFDL 387
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P + + +I Y G+L+ I N+M G + D V V+++ +
Sbjct: 388 MLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGK 447
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ------DLNSNDFPLSILELTE 328
+ + +M D G+ YN ++ T S+L+ ++ +N L I+ +
Sbjct: 448 MDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSS 507
Query: 329 VLN 331
++N
Sbjct: 508 IIN 510
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI G+ + + EA++L + L PS
Sbjct: 656 RCFDEAIFLFKEL--RAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVV 713
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G ++ N V+ NE+ R +L K+
Sbjct: 714 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIVRAGAYLSKI 773
Query: 286 KD 287
+
Sbjct: 774 DE 775
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ Y L+D FCK +K + D +R ++ + +I+G C +G
Sbjct: 504 VVTYNTLMDGFCKVGEMEKAKELWYDMISR---------EIFPSYISFSILINGFCSLGL 554
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA L +EM+ KG++P+ II GY R G L +N M S+G D + N
Sbjct: 555 VSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNT 614
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+++S+ R + M++ G+ ++ TYN++L S
Sbjct: 615 LINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFS 655
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ C+ + DD ++V V+ L ++I G C+ G +A
Sbjct: 434 VVTYNTLLNGLCR---GKMLDDADELFKEMV--ERGVFPDFYTLTTLIHGYCKDGNMTKA 488
Query: 209 ENLIEEMRVKGLEP---------SGF--------------------------EYKCIIYG 233
+L E M ++ L+P GF + +I G
Sbjct: 489 LSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILING 548
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ LGL+ + R+ ++M+ G + V N ++ Y LS+ +L M G+P
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPD 608
Query: 294 VRTYNSVLNS 303
TYN+++NS
Sbjct: 609 CITYNTLINS 618
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC+ G A+ +++EM GL P+ + ++ R + + ER+ N+M
Sbjct: 299 ALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQR 358
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + + ++ + + EL R + + +KMK G+ Y ++N
Sbjct: 359 GVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILING 408
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 9/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--LKSMISGLCEMGQPHEAE 209
Y LI+ CK S Y R ++++ V + A M+ C EAE
Sbjct: 297 YNALINGLCKEGS-------YERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAE 349
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ EM +G+ P + I+ + R G L +M+ G DTV ++++ Y
Sbjct: 350 RVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGY 409
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++++S + +M + G V TYN++LN
Sbjct: 410 CRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNG 443
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 90/243 (37%), Gaps = 48/243 (19%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-----------------VLFY 152
NP ++A +I FL + + EA++L+L + K G E+ V+ +
Sbjct: 98 NPSIIATLIHFLVQSKKLPEAQSLLLRIIRKSGVSHVEVIDSLISTSSSNLNSNQNVVVF 157
Query: 153 CNLIDSFCKHDS------------KRGFDDTYARLNQLVNS------------------S 182
LI ++ + KRGF + N L+ +
Sbjct: 158 DLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFVK 217
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V L M++ LC+ G+ + EM KG+ Y ++ Y R GL+ +
Sbjct: 218 SGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVSE 277
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL- 301
+V+ M G + N +++ R L +M G+ + T+N +L
Sbjct: 278 AFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLV 337
Query: 302 NSC 304
SC
Sbjct: 338 ESC 340
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +L+D FCK + DD L +V V ++I GLC+ + EA
Sbjct: 249 VMTFNSLVDGFCKRGN---VDDARKLLGIMVAKGMRPNV--VTYSALIDGLCKSQKFLEA 303
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++EEM+ +G+ P F Y +I+G + +E+ E+++ +M G D V + ++ +
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 363
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L LQ+M+ V TYN+V++
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 398
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 84/187 (44%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II K G+ EA+ + E + R+ V+ Y +ID CK + L
Sbjct: 360 IIHAFCKSGKLLEAQKTLQEMRKQ---RKSPDVVTYNTVIDGLCKLGK---IAEAQVILE 413
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+ S V ++I+GLC+ EA+ L++ M G P Y II G +
Sbjct: 414 QM-QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCK 472
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE+ E ++ M+ G + V ++S ++ +++M+++G P ++ T
Sbjct: 473 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 532
Query: 297 YNSVLNS 303
YN+++N
Sbjct: 533 YNTMVNG 539
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 11/202 (5%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E F N ++ K+G ++A L+ ++K G R V+ Y LID CK
Sbjct: 242 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-GMRPN--VVTYSALIDGLCKSQ 298
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
F + L ++ + V ++I GLC+ + EAE ++ M G P
Sbjct: 299 K---FLEAKEVLEEM--KTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 353
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y II+ + + G L + ++ + +M D V N V+ +++ + L+
Sbjct: 354 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILE 413
Query: 284 KMKDSG--IPFSVRTYNSVLNS 303
+M++SG +P V TY++V+N
Sbjct: 414 QMQESGDVLP-DVVTYSTVING 434
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 91/189 (48%), Gaps = 9/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ EA+ +ILE + + G ++V Y +I+ CK D + L+
Sbjct: 395 VIDGLCKLGKIAEAQ-VILEQMQESGDVLPDVVT-YSTVINGLCKSDM---LVEAQKLLD 449
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + + V ++I GLC+ G+ EAE L++ M+ G P+ Y +I G +
Sbjct: 450 RMCKAGCNPDV--VTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 507
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS--V 294
+++ ER++ +M + G + V N +++ + +Q+MKD S
Sbjct: 508 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 567
Query: 295 RTYNSVLNS 303
TY +++N+
Sbjct: 568 ATYRTIVNA 576
>gi|21537126|gb|AAM61467.1| unknown [Arabidopsis thaliana]
Length = 766
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 67/117 (57%), Gaps = 1/117 (0%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I GLC++G+ EAE L+ M+++ P+ Y C+I GY R LE + +V++M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCVPNAVTYNCLIDGYCRAVKLETAKEVVSRM 432
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ D + + V N ++ H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C + +A E+M G P Y +I G ++ D R+V +++
Sbjct: 481 TLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + NM++ + D N ++ L M+ G TYN++++
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 121/248 (48%), Gaps = 26/248 (10%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC--KHDSKRGFDDTYARLNQLVN 180
K G+ +E +T + + K G + V+ YC+L+D +C K +K A+
Sbjct: 279 KDGKMKEGKT-VFAMMMKQGIKPN--VVTYCSLMDGYCLVKEVNK-------AKSILYTM 328
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S V Q+ +I G C++ + EA NL +EM K + P Y +I G +LG +
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKI 388
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++V++M G D + + +L + ++++ + + L K+KD GI ++ TY +
Sbjct: 389 SYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTIL 448
Query: 301 LNS-CS-----TIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSV 346
++ C ++ +DL + +++ T +++ +E ++++ +++D+S
Sbjct: 449 IDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSC 508
Query: 347 LDEAMKWD 354
+ +A+ ++
Sbjct: 509 IPDAVTYE 516
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI CK R D R++ LV + +Y ++I G+C+ ++A +
Sbjct: 165 YGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMY------STIIDGMCKDKHVNDAFD 218
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM KG+ P+ Y +I G+ +G L+D + N+M + + D N+++ +
Sbjct: 219 LYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFC 278
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ M GI +V TY S+++
Sbjct: 279 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 311
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/279 (19%), Positives = 123/279 (44%), Gaps = 36/279 (12%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL-GSRERELVLFYCNLIDSFCKHDSK 165
FQ + +I L K G+ A L+ L ++ G+ + V+ Y +ID CK
Sbjct: 158 FQLDQVGYGTLIHGLCKVGETRAA----LDLLRRVDGNLVQPNVVMYSTIIDGMCK---D 210
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ +D + +++V+ S V + ++ISG +GQ +A +L +M ++ ++P +
Sbjct: 211 KHVNDAFDLYSEMVSKGISPNVVTYS--ALISGFFTVGQLKDAIDLFNKMILENIKPDVY 268
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ ++ G+ + G +++ + + M G + + V ++ Y E+++ L M
Sbjct: 269 TFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTM 328
Query: 286 KDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSS 345
G+ +++YN +++ I + +E +++ KE+
Sbjct: 329 SQRGVNPDIQSYNILIDGFCKIKKV---------------------DEAMNLFKEMHHKH 367
Query: 346 VLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNR 384
++ + + ++S L LG + L+ +DEM +R
Sbjct: 368 IIPDVVTYNSLIDGL----CKLGKISY-ALKLVDEMHDR 401
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 5/126 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +++D+ CK+ D A L +L + +I GLC+ G+ +A
Sbjct: 407 IITYSSILDALCKNHQ---VDKAIALLTKL--KDQGIRPNMYTYTILIDGLCKGGRLEDA 461
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
N+ E++ VKG + Y +I+G+ GL ++ ++++M+ + D V +++ S
Sbjct: 462 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYEIIIRS 521
Query: 269 YGDHNE 274
D +E
Sbjct: 522 LFDKDE 527
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ Q +A L+ +++ +G+ P+ + Y +I G + G LED I +
Sbjct: 412 SILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVK 471
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
G + +++ + + + L KMKD S IP +V TY ++ S
Sbjct: 472 GYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAV-TYEIIIRS 521
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 136/332 (40%), Gaps = 59/332 (17%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR--------FLSSLALAVTRDSKAASRLISKF--VA 66
CCR R R L ARL + G + FL L A R +A L+ + ++
Sbjct: 134 CCRAR--RPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHA-KRTDEAVDVLLHRMSELS 190
Query: 67 SSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQ 124
P I+ N + L D+ S A + R+ +E + +P +V+ +I KQ
Sbjct: 191 CVPDAISYNTVIKSLCGDSR----SQEALDMVQRMAKEGG-RCSPDVVSFNTVIHGFFKQ 245
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--- 181
G+ +A L E + K + V Y +++D+ CK R D L Q+V+
Sbjct: 246 GEVSKACNLFNEMVQKGVVPD---VGTYNSIVDALCK---ARAMDKAEFVLRQMVDKGVE 299
Query: 182 -------------SSSVYVKRQA-----------------LKSMISGLCEMGQPHEAENL 211
S S + K A S +S LC+ G+ +AE +
Sbjct: 300 PDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEI 359
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG P Y +++GY G DM + + M G + C N+++S++
Sbjct: 360 FQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAK 419
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L +M+ G+ +V TY++++++
Sbjct: 420 RGMMDEAMLVFTEMQGQGVRPNVVTYSTLISA 451
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 13/214 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
G +A+ I E +SK R ++F+ ++I S C D + + + + +
Sbjct: 490 HGDLVKAKEFISEMMSK--GLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPT 547
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S+I G C +G+ +A +++ M G+EP ++ GY + G ++D
Sbjct: 548 IV-----TFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDG 602
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M + TV N+VL S +M DSG + TY +L
Sbjct: 603 LILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKG 662
Query: 304 -CST-----IMSMLQDLNSNDFPLSILELTEVLN 331
C +++ L + D I L ++N
Sbjct: 663 LCRNDLTDEAITLFHKLGAMDCKFDITILNTMIN 696
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +AE ++ +M KG+EP G Y II+GY G ++ ++ +M S
Sbjct: 272 SIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSK 331
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G DTV + +SS H Q M G + +Y+ +L+ +T
Sbjct: 332 GLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYAT 384
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 172 YARLNQLVNSSS--SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+A +N L +S + + + +IS + G EA + EM+ +G+ P+ Y
Sbjct: 388 FADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYST 447
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I + R+G L D +QM S G +T + ++ + H +L + ++ +M G
Sbjct: 448 LISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKG 507
Query: 290 I 290
+
Sbjct: 508 L 508
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I LC + EA ++++ M +G P + +I+G+ + G + + N+M
Sbjct: 200 TVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMV 259
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN--SCS 305
G D N ++ + + + L++M D G+ TYN++++ SCS
Sbjct: 260 QKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCS 315
>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Brachypodium distachyon]
Length = 692
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 58/109 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC+ G EA L+ M+ G P Y +I GYG+ G LE++E++V +M G
Sbjct: 200 MIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCG 259
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R D V N +++ + + R + +MK G+ +V T+++ +++
Sbjct: 260 CRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDA 308
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 19/260 (7%)
Query: 46 LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105
L LA R S+ A RL + A P N + L + +L +
Sbjct: 171 LCLARERSSELAWRLFEQLPA--PNVFTFNIMIDFLCKEGDLAEARAL-------LARMK 221
Query: 106 WFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+P +V +I K G+ EE E L+ E G R V+ Y L++ FCK
Sbjct: 222 AIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMR---GCGCRPDVVTYNALVNCFCKFG 278
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+A + + V + + C+ G EA L +MR+KG++P+
Sbjct: 279 RMERAYSYFAEMKR-----EGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPN 333
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y C++ G + G L+D + N+M G ++ V +++ +++ +
Sbjct: 334 EVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFR 393
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
M+ +GI + Y ++++
Sbjct: 394 LMERAGIRANELLYTTLIHG 413
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 46/222 (20%)
Query: 120 FLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
F+D K G EA L + K G + E+ Y L+D CK DD N
Sbjct: 305 FVDAFCKNGMVREAMKLFAQMRMK-GMKPNEVT--YTCLVDGTCKAGR---LDDALVLTN 358
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN-------------------------- 210
++V + V + ++ GLC+ G+ EAE+
Sbjct: 359 EMVQQGVPLNVVTYTV--LVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFV 416
Query: 211 ---------LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
L+ EM+ KG+E Y +I+G L L++ + ++N+M+ G + + V
Sbjct: 417 YKNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVI 476
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + S + LQKM DSG ++ TY ++++
Sbjct: 477 YTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDG 518
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 65/146 (44%), Gaps = 8/146 (5%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ N + ++ L K G+ ++A L+ E + K S + + +L+D H +
Sbjct: 540 LEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDN---VVCTSLMDG---HLKQG 593
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D +A +++NS + + + G C + EA ++ EM G+ P
Sbjct: 594 NLQDAFALKAKMINSG--LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVV 651
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMES 252
Y C+I +LG +E+ + N+MES
Sbjct: 652 YNCLINKCQKLGNMEEAAILQNEMES 677
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 77/170 (45%), Gaps = 8/170 (4%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA++L L + + G + ++ Y N++D+ K R + A L ++++S +
Sbjct: 456 DEAKSL-LNKMDECGLKPNNVI--YTNIMDACFK---ARKESEAIALLQKMMDSGFRPNI 509
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+++ GLC+ G EA + +M GLEP+ Y ++ G + G L+ ++
Sbjct: 510 VTYC--ALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLL 567
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++M G +D V ++ + L KM +SG+ + Y
Sbjct: 568 DEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGY 617
>gi|260780324|gb|ACX50708.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780342|gb|ACX50717.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780358|gb|ACX50725.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780388|gb|ACX50740.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L KQG+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKQGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G
Sbjct: 23 VIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 83 FKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|449441652|ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
gi|449522692|ref|XP_004168360.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Cucumis sativus]
Length = 496
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 15/233 (6%)
Query: 75 NALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
N ++ LS T+ R A ++ + E+ +++ +++ L + GQ A L+
Sbjct: 107 NTVTEALSDHITNKRWLQ-ALEVFEMLREQPFYEPKEGTYMKLLVLLGRSGQPHRAR-LL 164
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN---QLVNSSSSVYVKRQA 191
+T+ + R Y L+ ++C+++ DD ++ LN L VY
Sbjct: 165 FDTM--VQERCEPTPELYTALLAAYCRNNL---IDDAFSTLNLMKTLPRCQPDVYTYSIL 219
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-VNQM 250
+K+ + + E+L EEM + + P+ ++ GYG++G + ME++ + +
Sbjct: 220 IKACVDD----SRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGKYDQMEKVLIGML 275
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ES R D N++LS +G+ + M W +K ++ GI RT+N ++ +
Sbjct: 276 ESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFNILIGA 328
>gi|399107196|gb|AFP20362.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L++++B V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIBEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 16/203 (7%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-YCNLIDSFCKHD 163
+ F +NP ++A L K + EEA + K+ R LF Y +L+D F K
Sbjct: 253 THFTFNP-----LVAALCKAERTEEAIAFV----KKMSERRCFPTLFTYTSLVDGFLKLG 303
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D+ +L + V S+I GLC++G+ E EMR +G EP
Sbjct: 304 R---LDEALLQLKEAVERG--FIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPD 358
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G+ + ++ R+ QM GT V TV N++L ++
Sbjct: 359 AVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFL 418
Query: 284 KMKDSGIPFSVRTYNSVLNS-CS 305
M++ G +V TY+++++ CS
Sbjct: 419 AMEERGCVATVVTYSALMDGFCS 441
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 9/141 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D K D+ A L Q+V +S +K + +I GL + G+ EA +
Sbjct: 114 YTALVDGLLKAGR---LDEAMAILEQMVEKGNSPTLKTYTV--VIDGLSKAGRVEEARRI 168
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRVDTVCSNMVLS 267
+M G P F Y +I G ++G L++ +NQM + G D V N+V+
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228
Query: 268 SYGDHNELSRMVLWLQKMKDS 288
L + + ++ DS
Sbjct: 229 QLCASGNLEDALAYFDELDDS 249
>gi|341605721|gb|AEK82963.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605821|gb|AEK83013.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|222632709|gb|EEE64841.1| hypothetical protein OsJ_19698 [Oryza sativa Japonica Group]
Length = 496
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
GQRE+ L E + G E L + C LI +C+ + R L +
Sbjct: 86 HGQREKGFALFEEM--RRGGVEPNLYTYNC-LIGEWCRTGE-------FERARSLFDEMP 135
Query: 184 SVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ R + ++I+GLC G+ +A L++ MR +G PS + ++ GYG+ G +
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ NQM++ G + V NM+++ + +++R L MK+ G+ + TY ++
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255
Query: 302 NS 303
+S
Sbjct: 256 DS 257
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 35/143 (24%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC------------------------ 229
+++ G GQ + L EEMR G+EP+ + Y C
Sbjct: 78 ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137
Query: 230 -----------IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+I G R G L D ++++ M ++GTR + N+++ YG ++S
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197
Query: 279 VLWLQKMKDSGIPFSVRTYNSVL 301
+ + +MK +G S TYN ++
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLI 220
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++++G C+ G EA + +EM + GL P+ Y +++GY G E + +M
Sbjct: 40 ACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEM 99
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + N ++ + E R +M GI +V +YN+++
Sbjct: 100 RRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDSF + + + A + + + + V ++ LC G +A L
Sbjct: 251 YTILIDSFARENHMGKAFEILAGMEK-----AGLEVDAHTYGVLVRALCMEGNMKDARKL 305
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ M KG+EPS Y +IYGYGR G +++ +M G
Sbjct: 306 FQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348
>gi|341605723|gb|AEK82964.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIXGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|260780314|gb|ACX50703.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780316|gb|ACX50704.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780320|gb|ACX50706.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780322|gb|ACX50707.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780326|gb|ACX50709.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780328|gb|ACX50710.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780334|gb|ACX50713.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780336|gb|ACX50714.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780350|gb|ACX50721.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780354|gb|ACX50723.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780356|gb|ACX50724.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780360|gb|ACX50726.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780362|gb|ACX50727.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780364|gb|ACX50728.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780366|gb|ACX50729.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780368|gb|ACX50730.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780370|gb|ACX50731.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780372|gb|ACX50732.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780374|gb|ACX50733.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780376|gb|ACX50734.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780378|gb|ACX50735.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780380|gb|ACX50736.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780382|gb|ACX50737.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780384|gb|ACX50738.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780386|gb|ACX50739.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780390|gb|ACX50741.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780392|gb|ACX50742.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L KQG+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGVQVPPHVFSLVIGGLCKQGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 62/120 (51%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V V +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 12 GVQVPPHVFSLVIGGLCKQGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDA 71
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 72 IRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
Length = 715
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 22/201 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ ++A TL E L G ++ Y ++ID CK + D A L
Sbjct: 145 VINGLFKEGEVDKAYTLFHEML---GQGFPPNIVTYNSVIDGLCK---AQAMDKAEAVLQ 198
Query: 177 QLVNSSSSVYVKRQALKSMISG---------------LCEMGQPHEAENLIEEMRVKGLE 221
Q+ + R LK M G C++G+ EA N+ + M +G
Sbjct: 199 QMFDKGQLEEAVR-LLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQN 257
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P + Y+ +++GY G L DM ++ M DG ++ N+++ +Y + L + +
Sbjct: 258 PDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTA 317
Query: 282 LQKMKDSGIPFSVRTYNSVLN 302
+M+ G +V TY +V++
Sbjct: 318 FIEMRQKGFSPNVVTYTTVID 338
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 97/231 (41%), Gaps = 13/231 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP I +L H L ++ L+F + R N + I+ L K+G+
Sbjct: 362 SPDIITFTSLIHGLCTIGEWKKVEKLSFEMINR-----GIHPNAIFLNTIMDSLCKEGRV 416
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
EA + + +G + V+ Y LID +C D K D++ L ++V S +
Sbjct: 417 LEAHDF-FDQIIHVGVKPD--VVSYTILIDGYCL-DGK--MDESIKLLGRMV--SIGLRP 468
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++++G C+ G+ +A L EM K ++P+ Y I++G G +
Sbjct: 469 DNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFY 528
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++ G ++ N+VL +++ + + Q ++ VRT+N
Sbjct: 529 MKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFN 579
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID CK +D + +Q+V+ S + S+I GLC +G+ +
Sbjct: 330 VVTYTTVIDILCKAGR---VEDAVSHFSQMVSEGLSPDII--TFTSLIHGLCTIGEWKKV 384
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E L EM +G+ P+ I+ + G + + +Q+ G + D V +++
Sbjct: 385 EKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDG 444
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ + L +M G+ TY+++LN
Sbjct: 445 YCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNG 479
>gi|341605761|gb|AEK82983.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIXLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|341605727|gb|AEK82966.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605729|gb|AEK82967.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L++++B V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIBEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|218197339|gb|EEC79766.1| hypothetical protein OsI_21159 [Oryza sativa Indica Group]
Length = 410
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
GQRE+ L E + G E L + C LI +C+ + R L +
Sbjct: 86 HGQREKGFALFEEM--RRGGVEPNLYTYNC-LIGEWCRTGE-------FERARSLFDEMP 135
Query: 184 SVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ R + ++I+GLC G+ +A L++ MR +G PS + ++ GYG+ G +
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ NQM++ G + V NM+++ + +++R L MK+ G+ + TY ++
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255
Query: 302 NS 303
+S
Sbjct: 256 DS 257
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 35/143 (24%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC------------------------ 229
+++ G GQ + L EEMR G+EP+ + Y C
Sbjct: 78 ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137
Query: 230 -----------IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+I G R G L D ++++ M ++GTR + N+++ YG ++S
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197
Query: 279 VLWLQKMKDSGIPFSVRTYNSVL 301
+ + +MK +G S TYN ++
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLI 220
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++++G C+ G EA + +EM + GL P+ Y +++GY G E + +M
Sbjct: 40 ACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEM 99
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + N ++ + E R +M GI +V +YN+++
Sbjct: 100 RRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDSF + + + A + + + + V ++ LC G +A L
Sbjct: 251 YTILIDSFARENHMGKAFEILAGMEK-----AGLEVDAHTYGVLVRALCMEGNMKDARKL 305
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ M KG+EPS Y +IYGYGR G +++ +M G
Sbjct: 306 FQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348
>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 604
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 87/198 (43%), Gaps = 8/198 (4%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ II L K G+ E E ++ E + K G ++ Y LID FCK + + ++
Sbjct: 184 SSIILLLCKSGKVVEGEKVLREMM-KRGVFPDHVI--YTTLIDGFCKLGNTQAAYKLFSE 240
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ + + A ++I GL G+ EA+ L EM KG EP Y +I GY
Sbjct: 241 M-----EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGY 295
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+LG ++ + NQM G + V + EL L +M G+ ++
Sbjct: 296 CKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNI 355
Query: 295 RTYNSVLNSCSTIMSMLQ 312
TYN+++N ++LQ
Sbjct: 356 STYNTIVNGLCKAGNILQ 373
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 87/187 (46%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L G+ EA+ L E + K G E+ Y LID +CK + + N
Sbjct: 256 LICGLSGSGKVVEADKLFNEMIKK-GFEPDEVT--YTALIDGYCKLGEMK---KAFFLHN 309
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+V + V ++ GLC+ G+ A L+ EM KGL+ + Y I+ G +
Sbjct: 310 QMVQIGLTPNV--VTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCK 367
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + +++ +M+ G DT+ ++ +Y E+ + L++M D G+ +V T
Sbjct: 368 AGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVT 427
Query: 297 YNSVLNS 303
+N ++N
Sbjct: 428 FNVLMNG 434
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 11/156 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L D CK D L+++ + + ++++GLC+ G +A
Sbjct: 320 VVTYTALADGLCKSGE---LDTANELLHEMCRKGLQLNI--STYNTIVNGLCKAGNILQA 374
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EEM+ GL P Y ++ Y + G + ++ +M G + V N++++
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + R++ W M + GI + TYNS++
Sbjct: 435 LCMSGKLEDGERLLKW---MLEKGIMPNAATYNSIM 467
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C +G+ + L++EM++KGL+P+ + Y II + G + + E+++ +M
Sbjct: 150 TIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKR 209
Query: 254 GTRVDTVCSNMVLSSY 269
G D V ++ +
Sbjct: 210 GVFPDHVIYTTLIDGF 225
>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 4/122 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC++G+ EA+ L EEM+ +G+ PS Y +I+G+ G E+ +R++++M G
Sbjct: 221 IVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQG 280
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ D V N+++ + ++ L M +SGI + TYNS++ M+ DL
Sbjct: 281 LQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG----FCMVGDL 336
Query: 315 NS 316
NS
Sbjct: 337 NS 338
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +D CK+D + L SS+ ++ + L +I GLC+ G+ A L
Sbjct: 428 YGIFLDGLCKNDCLFEAMKLFTEL-----KSSNFKLEIENLNCLIDGLCKAGKLETAWEL 482
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E++ +G EP+ Y +I+G+ R G ++ ++ +ME++G D + N ++ + +
Sbjct: 483 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 542
Query: 272 HNELSRMVLWLQKMKDSGI-PFSVRTYNSVLNSCSTIMSML 311
N+L +V L +M + P ++ +CS ++ ML
Sbjct: 543 SNKLEEVVQLLHRMAQKDVSPDAI--------TCSIVVDML 575
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 86/205 (41%), Gaps = 14/205 (6%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ EE++ L+ E L + + ++V F LID+ CK + L ++ S
Sbjct: 264 GKWEESKRLLDEMLDQ--GLQPDMVTFNV-LIDTLCKEGK---VIEAKKLLGVMI--ESG 315
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ S+I G C +G + A L M KG EP Y +I GY + +E+
Sbjct: 316 IVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAM 375
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL--- 301
++ N+M G R + + + +L ++ MK GI + TY L
Sbjct: 376 KLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGL 435
Query: 302 --NSC-STIMSMLQDLNSNDFPLSI 323
N C M + +L S++F L I
Sbjct: 436 CKNDCLFEAMKLFTELKSSNFKLEI 460
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++D CK G +D +L + + + + + S+I G C G+ E+
Sbjct: 215 VITYNIIVDGLCK----VGREDEAKQLFEEMKTQGMI-PSIISYNSLIHGFCCAGKWEES 269
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L++EM +GL+P + +I + G + + ++++ M G D V N ++
Sbjct: 270 KRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEG 329
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ +L+ M G V +YN ++N S + +
Sbjct: 330 FCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKV 371
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 105/247 (42%), Gaps = 41/247 (16%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+R+ E +P +VA +I K+G +A L E + + +LV Y +++
Sbjct: 171 LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQR--GIPPDLVT-YNSVV 227
Query: 157 DSFCKHDSKRGFDDTYARLNQLVN---------------SSSSVYVKRQALK-------- 193
+ CK R D A L Q+VN SS ++A++
Sbjct: 228 HALCK---ARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 284
Query: 194 ---------SMISG-LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
SM+ G LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM
Sbjct: 285 SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 344
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + M DG D N+ + +Y + L + ++ +M+D G+ V TY +V+ +
Sbjct: 345 TDLFDLMLGDGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAA 404
Query: 304 CSTIMSM 310
I M
Sbjct: 405 LCRIGKM 411
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 95/236 (40%), Gaps = 18/236 (7%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 158 LCNQGKSGQADNL-LRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ--- 213
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ S++ LC+ +AE + +M K + P+ + Y +IYGY G
Sbjct: 214 --RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQW 271
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++ R+ +M D V +M++ S + ++ M G V +YN +
Sbjct: 272 KEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIM 331
Query: 301 LN-----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
LN C M+ L DL D I N + +K + +LD+AM
Sbjct: 332 LNGYATKGCLVDMTDLFDLMLGD---GIAPDFYTFNVQ----IKAYANCGMLDKAM 380
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEA-ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ G CE + EA + L+ G P F Y ++ G + ++ M
Sbjct: 118 LLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEG 177
Query: 254 GTRV--DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GT D V N V+ + ++++ ++M GIP + TYNSV+++
Sbjct: 178 GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHA 229
>gi|297724361|ref|NP_001174544.1| Os05g0583900 [Oryza sativa Japonica Group]
gi|42491383|gb|AAS16889.1| hypothetical protein [Oryza sativa Japonica Group]
gi|255676609|dbj|BAH93272.1| Os05g0583900 [Oryza sativa Japonica Group]
Length = 467
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 12/182 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
GQRE+ L E + G E L + C LI +C+ + R L +
Sbjct: 86 HGQREKGFALFEEM--RRGGVEPNLYTYNC-LIGEWCRTGE-------FERARSLFDEMP 135
Query: 184 SVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ R + ++I+GLC G+ +A L++ MR +G PS + ++ GYG+ G +
Sbjct: 136 VRGIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMS 195
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ NQM++ G + V NM+++ + +++R L MK+ G+ + TY ++
Sbjct: 196 NALPFFNQMKAAGFQPSAVTYNMLIAGFCRARDMTRANRALSDMKERGLEPTKVTYTILI 255
Query: 302 NS 303
+S
Sbjct: 256 DS 257
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 35/143 (24%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC------------------------ 229
+++ G GQ + L EEMR G+EP+ + Y C
Sbjct: 78 ALMHGYFTHGQREKGFALFEEMRRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVR 137
Query: 230 -----------IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+I G R G L D ++++ M ++GTR + N+++ YG ++S
Sbjct: 138 GIVRNVVSYNTLIAGLCRHGKLWDAAKLLDMMRTEGTRPSIITFNLLVDGYGKAGKMSNA 197
Query: 279 VLWLQKMKDSGIPFSVRTYNSVL 301
+ + +MK +G S TYN ++
Sbjct: 198 LPFFNQMKAAGFQPSAVTYNMLI 220
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++++G C+ G EA + +EM + GL P+ Y +++GY G E + +M
Sbjct: 40 ACTALVNGCCKGGDVAEARRVFDEMPLLGLAPNEVTYTALMHGYFTHGQREKGFALFEEM 99
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + N ++ + E R +M GI +V +YN+++
Sbjct: 100 RRGGVEPNLYTYNCLIGEWCRTGEFERARSLFDEMPVRGIVRNVVSYNTLI 150
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 5/103 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDSF + + + A + + + + V ++ LC G +A L
Sbjct: 251 YTILIDSFARENHMGKAFEILAGMEK-----AGLEVDAHTYGVLVRALCMEGNMKDARKL 305
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ M KG+EPS Y +IYGYGR G +++ +M G
Sbjct: 306 FQSMGEKGVEPSNVIYDMMIYGYGREGSSYKALKLIMEMRQKG 348
>gi|341606821|gb|AEK83513.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 205
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H +++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVNEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|341605763|gb|AEK82984.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|255556562|ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541630|gb|EEF43179.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 491
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 126/287 (43%), Gaps = 44/287 (15%)
Query: 100 RITEESWFQ-------------WNPK--LVAEIIAFLDKQGQREEAETLILETLSKLGSR 144
RI ++ WFQ ++PK +++ L + GQ + A L E + +
Sbjct: 104 RILKKQWFQALEVFEMLKEQPFYHPKEGTYMKLLVLLGRTGQPQRAHQLFDEMVEEGIEP 163
Query: 145 ERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCE 201
EL Y L+ ++C++ D+ ++ L Q L VY LK+ +
Sbjct: 164 TAEL---YTALLAAYCRNHLT---DEAFSILQQMKTLPRCLPDVYTYSTLLKACVDA--- 214
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTV 260
+ E L +EM + + P+ ++ GYG+ G+ + MER+++ M ES + D
Sbjct: 215 -SRFELVEALYQEMGERLITPNTVTQNIVLSGYGKAGMYDQMERVLSGMLESTECKPDVW 273
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CSTIMSML 311
N++LS +G+ ++ M W +K + GI RT+N ++ + S++M +
Sbjct: 274 TMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILIGAYGKKRMYDKMSSVMEFM 333
Query: 312 QDLNSNDFPLSILELTEVLNEEEVSV-VKELEDS--SVLDEAMKWDS 355
+ L FP + V+ V+ VK +E + + E MK D+
Sbjct: 334 RKLQ---FPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMKADT 377
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 13/219 (5%)
Query: 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
++ S A L+ +TE F + +I K G +A TL + + +
Sbjct: 582 KMLSEADELFTEMTERGVFP-DFYTFTTLINGYXKDGNMNKAVTLFEMMIQR---NLKPD 637
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPH 206
V+ Y LID FCK ++N+L N S +Y + +I+G C MG
Sbjct: 638 VVTYNTLIDGFCKGSEME-------KVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 690
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L +EM KG E + I+ GY R G + ++ M G D + N ++
Sbjct: 691 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 750
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + R + KM++SG+ V TYN +LN S
Sbjct: 751 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQM 250
+++ G C G +A+ + M +KG+ P G Y +I G+ + E+M+R +VN+M
Sbjct: 713 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK---EENMDRAFALVNKM 769
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E+ G D + N++L+ + + L + KM + G+ TY S++N
Sbjct: 770 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 822
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V V L MI+ LC+ + ++ + +M KG+ P Y +I Y R GLLE+
Sbjct: 352 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 411
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M G + N +++ + R L +M G+ TYN +L
Sbjct: 412 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 471
Query: 303 SC 304
C
Sbjct: 472 EC 473
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V+ Y LI+++C+ ++ + +L++S S +K ++I+GLC+ G+
Sbjct: 393 VVTYNTLINAYCRQGL---LEEAF----ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 445
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A+ +++EM G+ P Y ++ R + D ERI ++M S G D V + ++
Sbjct: 446 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 505
Query: 267 SSYGDHNELSRMVLWLQKMKDSGI 290
+ L + + + + MK++G+
Sbjct: 506 GLLSKNGCLDQALKYFRDMKNAGL 529
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S + V A S++ GL ++G A + +E+ G++ + + +I + +E
Sbjct: 316 SKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIE 375
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + ++ ME G D V N ++++Y L + M G+ V TYN+++
Sbjct: 376 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 435
Query: 302 NS-CST 306
N C T
Sbjct: 436 NGLCKT 441
>gi|341605765|gb|AEK82985.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605767|gb|AEK82986.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605769|gb|AEK82987.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605771|gb|AEK82988.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|341605713|gb|AEK82959.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605715|gb|AEK82960.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605717|gb|AEK82961.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605719|gb|AEK82962.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605755|gb|AEK82980.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605757|gb|AEK82981.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605759|gb|AEK82982.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605827|gb|AEK83016.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605829|gb|AEK83017.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|341605691|gb|AEK82948.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605825|gb|AEK83015.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
Length = 799
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EAE ++ E K + + Y LID +CK + + N
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVD---AVTYTVLIDGYCKVGK---MTEAFLVHN 449
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V ++ GLC+ G A L+ EM KGLE + F Y +I G +
Sbjct: 450 KMVQKRVTPNV--VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCK 507
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE R + M+ G + D ++ + EL R LQ+M D GI ++ T
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 568 YNVLMNG 574
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSS 183
E ET I + LS++ +R EL + Y ++I C D+ R +D
Sbjct: 300 ELETAI-KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH--------- 349
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V + +++SG C G A N +EM+ +GL G Y +I G R G L++
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
ER++ +ME G VD V +++ Y +++ L KM + +V TY ++
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G C + + A L+ EM +GLE + Y +I G + D R+V M G
Sbjct: 291 MVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG 350
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D V+S + +L+ W +M+ G+ TY +++N
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 136 ETLSKLGSRERELVLF-YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
E L ++ S+ EL +F Y +LI+ CK + T +++ VY +
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE-AGLKPDVYT----YTT 535
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ + A +L++EM KG++P+ Y ++ G+ G +E +R++ M
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595
Query: 255 TRVDTVCSNMVLSSY 269
+T N ++ Y
Sbjct: 596 IHPNTTTYNSLMKQY 610
>gi|341606827|gb|AEK83516.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H +++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVNEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|341606825|gb|AEK83515.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 5 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 61
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 62 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 116
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H +++ +
Sbjct: 117 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVNEAMTLF 176
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 177 KRMEEEEGCDQTVYTYTILISG 198
>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
Length = 799
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EAE ++ E K + + Y LID +CK + + N
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVD---AVTYTVLIDGYCKVGK---MTEAFLVHN 449
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V ++ GLC+ G A L+ EM KGLE + F Y +I G +
Sbjct: 450 KMVQKRVTPNV--VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCK 507
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE R + M+ G + D ++ + EL R LQ+M D GI ++ T
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 568 YNVLMNG 574
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSS 183
E ET I + LS++ +R EL + Y ++I C D+ R +D
Sbjct: 300 ELETAI-KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH--------- 349
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V + +++SG C G A N +EM+ +GL G Y +I G R G L++
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
ER++ +ME G VD V +++ Y +++ L KM + +V TY ++
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G C + + A L+ EM +GLE + Y +I G + D R+V M G
Sbjct: 291 MVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG 350
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D V+S + +L+ W +M+ G+ TY +++N
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 136 ETLSKLGSRERELVLF-YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
E L ++ S+ EL +F Y +LI+ CK + T +++ VY +
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE-AGLKPDVYT----YTT 535
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ + A +L++EM KG++P+ Y ++ G+ G +E +R++ M
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595
Query: 255 TRVDTVCSNMVLSSY 269
+T N ++ Y
Sbjct: 596 IHPNTTTYNSLMKQY 610
>gi|341605687|gb|AEK82946.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKXDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|341605689|gb|AEK82947.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKXDV--VTYSXVVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|28393724|gb|AAO42273.1| unknown protein [Arabidopsis thaliana]
Length = 642
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI++ K D+ + L + N SS VY MI + G+ EA +
Sbjct: 447 YCSLINALGKAKRYEAADELFKELKENFGNVSSRVYA------VMIKHFGKCGKLSEAVD 500
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM+ +G P + Y ++ G + G++ + ++ +ME +G R D N++L+ +
Sbjct: 501 LFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
R + + +K SGI TYN++L C M ++
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEE 602
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I G+ E + + +++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAADELFKELKENF 474
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
V + +++ +G +LS V +MK+ G V YN+++ S M+ +
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM-SGMVKAGMINEA 533
Query: 315 NS 316
NS
Sbjct: 534 NS 535
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L ++GQ E+ + E ++ + Y LI S+ K G +D+ RL
Sbjct: 203 VILMLMQEGQHEKVHEVYTEMCNEGDCFPDTIT--YSALISSY----EKLGRNDSAIRLF 256
Query: 176 ----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ + + +Y +++ ++G+ +A +L EEM+ G P+ + Y +I
Sbjct: 257 DEMKDNCMQPTEKIYT------TLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G+ G +++ M DG D V N +++ G + + +M
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 292 FSVRTYNSVLNS 303
+V +YN+V+ +
Sbjct: 371 PTVVSYNTVIKA 382
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 94/221 (42%), Gaps = 17/221 (7%)
Query: 89 RLSSLAFPLYMRITEESWFQWNPKL--VAEIIAFLDKQGQREEAETLILETLSKLGSRER 146
++ S A L+ +TE F P +I K G +A TL + + +
Sbjct: 478 KMLSEADELFTEMTERGVF---PDFYTFTTLINGYSKDGNMNKAVTLFEMMIQR---NLK 531
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQ 204
V+ Y LID FCK ++N+L N S +Y + +I+G C MG
Sbjct: 532 PDVVTYNTLIDGFCKGSEME-------KVNELWNDMISRRIYPNHISYGILINGYCNMGC 584
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA L +EM KG E + I+ GY R G + ++ M G D + N
Sbjct: 585 VSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNT 644
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+++ + + R + KM++SG+ V TYN +LN S
Sbjct: 645 LINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQM 250
+++ G C G +A+ + M +KG+ P G Y +I G+ + E+M+R +VN+M
Sbjct: 609 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK---EENMDRAFALVNKM 665
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E+ G D + N++L+ + + L + KM + G+ TY S++N
Sbjct: 666 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 718
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V V L MI+ LC+ + ++ + +M KG+ P Y +I Y R GLLE+
Sbjct: 248 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 307
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M G + N +++ + R L +M G+ TYN +L
Sbjct: 308 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 367
Query: 303 SC 304
C
Sbjct: 368 EC 369
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V+ Y LI+++C+ ++ + +L++S S +K ++I+GLC+ G+
Sbjct: 289 VVTYNTLINAYCRQGL---LEEAF----ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 341
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A+ +++EM G+ P Y ++ R + D ERI ++M S G D V + ++
Sbjct: 342 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 401
Query: 267 SSYGDHNELSRMVLWLQKMKDSGI 290
+ L + + + + MK++G+
Sbjct: 402 GLLSKNGCLDQALKYFRDMKNAGL 425
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S + V A S++ GL ++G A + +E+ G++ + + +I + +E
Sbjct: 212 SKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIE 271
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + ++ ME G D V N ++++Y L + M G+ V TYN+++
Sbjct: 272 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 331
Query: 302 NS-CST 306
N C T
Sbjct: 332 NGLCKT 337
>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 754
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EAE ++ E K + + Y LID +CK + + N
Sbjct: 396 LINGLCRAGELKEAERVLQEMEDKGLDVD---AVTYTVLIDGYCKVGK---MTEAFLVHN 449
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V ++ GLC+ G A L+ EM KGLE + F Y +I G +
Sbjct: 450 KMVQKRVTPNV--VTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCK 507
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE R + M+ G + D ++ + EL R LQ+M D GI ++ T
Sbjct: 508 AGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVT 567
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 568 YNVLMNG 574
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 15/177 (8%)
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSS 183
E ET I + LS++ +R EL + Y ++I C D+ R +D
Sbjct: 300 ELETAI-KLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMH--------- 349
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V + +++SG C G A N +EM+ +GL G Y +I G R G L++
Sbjct: 350 GVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEA 409
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
ER++ +ME G VD V +++ Y +++ L KM + +V TY ++
Sbjct: 410 ERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTAL 466
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G C + + A L+ EM +GLE + Y +I G + D R+V M G
Sbjct: 291 MVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHG 350
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D V+S + +L+ W +M+ G+ TY +++N
Sbjct: 351 VVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALING 399
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 136 ETLSKLGSRERELVLF-YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
E L ++ S+ EL +F Y +LI+ CK + T +++ VY +
Sbjct: 481 ELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDE-AGLKPDVYT----YTT 535
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ + A +L++EM KG++P+ Y ++ G+ G +E +R++ M
Sbjct: 536 IIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN 595
Query: 255 TRVDTVCSNMVLSSY 269
+T N ++ Y
Sbjct: 596 IHPNTTTYNSLMKQY 610
>gi|341606823|gb|AEK83514.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H +++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVNEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|341605781|gb|AEK82993.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605783|gb|AEK82994.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIXLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 86/174 (49%), Gaps = 9/174 (5%)
Query: 136 ETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--- 191
E L+++ R+ R V+ + L++ CK R D+ ++L S +V +
Sbjct: 302 ELLAEMEKRKIRPSVVTFGILVNHLCK---ARRIDEALQVFDRLRGKGGSNWVGVEPDVV 358
Query: 192 -LKSMISGLCEMGQPHEAENLIEEMRVKGLE-PSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
++I GLC++G+ + +L+EEM++ + P+ Y C+I G+ + G + + Q
Sbjct: 359 LFNTLIDGLCKVGKEEDGLSLLEEMKMGNINRPNTVTYNCLIDGFFKAGNFDRAHELFRQ 418
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M +G + + + N ++ H + R V + +MK G+ + TY +++++
Sbjct: 419 MNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISA 472
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 99/235 (42%), Gaps = 44/235 (18%)
Query: 105 SWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+W P +V +I L K G+ E+ +L+ E K+G+ R + Y LID F K
Sbjct: 349 NWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLEEM--KMGNINRPNTVTYNCLIDGFFKA 406
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE- 221
+ FD + Q+ + V L +++ GLC+ G+ H A EM+ KGL+
Sbjct: 407 GN---FDRAHELFRQM--NEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKG 461
Query: 222 ----------------------------------PSGFEYKCIIYGYGRLGLLEDMERIV 247
P Y +I G G + D +V
Sbjct: 462 NAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAGRMNDASVVV 521
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++++ G +D C N+++S + +L R+ L +M+++G+ TYN++++
Sbjct: 522 SKLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLIS 576
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 96/208 (46%), Gaps = 24/208 (11%)
Query: 116 EIIAFLDKQGQREEAETL--ILETLSKLGSRERELVLF--------------YCNLIDSF 159
E+ ++++G + TL +++ L K G R + F Y LI +F
Sbjct: 414 ELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAVEFFNEMKGKGLKGNAATYTALISAF 473
Query: 160 CK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
C ++ R L+ + + VY S+ISGLC G+ ++A ++ ++++
Sbjct: 474 CGVNNINRAMQCFEEMLSSGCSPDAVVYY------SLISGLCIAGRMNDASVVVSKLKLA 527
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G Y +I G+ + LE + ++ +ME G + DT+ N ++S G + +
Sbjct: 528 GFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTGDFATA 587
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
++KM G+ SV TY +++++ CS
Sbjct: 588 SKVMEKMIKEGLRPSVVTYGAIIHAYCS 615
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 72/151 (47%), Gaps = 6/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FCK K+ + Y L ++ + V ++IS L + G A +
Sbjct: 536 YNVLISGFCK---KKKLERVYELLTEM--EETGVKPDTITYNTLISYLGKTGDFATASKV 590
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYG 270
+E+M +GL PS Y II+ Y +++ +I +M + +TV N+++ +
Sbjct: 591 MEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIYNILIDALC 650
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+N++ R + ++ MK + + TYN++L
Sbjct: 651 RNNDVDRAISLMEDMKVKRVRPNTTTYNAIL 681
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 87/194 (44%), Gaps = 7/194 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
EE+ + + +I++L K G A ++E + K G R V+ Y +I ++C
Sbjct: 560 EETGVKPDTITYNTLISYLGKTGDFATASK-VMEKMIKEGLRPS--VVTYGAIIHAYC-- 614
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
SK+ D+ ++ S+S V +I LC A +L+E+M+VK + P
Sbjct: 615 -SKKNVDEGMKIFGEMC-STSKVPPNTVIYNILIDALCRNNDVDRAISLMEDMKVKRVRP 672
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y I+ G +L ++++M + R D + ++ E+ ++ ++
Sbjct: 673 NTTTYNAILKGVRDKKMLHKAFELMDRMVEEACRPDYITMEVLTEWLSAVGEIEKLKHFV 732
Query: 283 QKMKDSGIPFSVRT 296
+ +DS P S +T
Sbjct: 733 EGYQDSSYPASSQT 746
>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Cucumis sativus]
Length = 660
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 74/153 (48%), Gaps = 5/153 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D CKH+ + + + Q ++V I+ C + ++A ++E
Sbjct: 304 LVDGMCKHNRISTAVEFFRVMQQKGLKGNNV-----TYTVFINAFCNVNNMNKAMEFLDE 358
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G P Y +I G + G L+D +V++++ G +D VC N+++S + N+
Sbjct: 359 MSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNK 418
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
L R WL +M+ +G+ TYN++++ S I
Sbjct: 419 LDRAQEWLNEMELAGVKPDSVTYNTLISYFSKI 451
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 7/166 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQAL--KSMISGLCEMGQ 204
V+ + LI+ CK R DD ++ + V+V + ++I GLC++G+
Sbjct: 187 VITFGILINHLCKF---RRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGR 243
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA L+ +MR P+ + C+I GY R G +E ++ N+ME+ + + N
Sbjct: 244 QEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNT 303
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++ HN +S V + + M+ G+ + TY +N+ + +M
Sbjct: 304 LVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFINAFCNVNNM 349
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 8/155 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FCK K D LN++ + V ++IS ++G A
Sbjct: 406 YNVLISEFCK---KNKLDRAQEWLNEM--ELAGVKPDSVTYNTLISYFSKIGNFKLAHKF 460
Query: 212 IEEM-RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV--DTVCSNMVLSS 268
+++M +GL P+ F Y +I+ Y +++ +I +M + ++V +TV N+++ S
Sbjct: 461 MKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIYNILIDS 520
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ + L MK G+ + TYNS+ +
Sbjct: 521 LCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKA 555
Score = 37.7 bits (86), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 58/111 (52%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL + G+ +A +++ +++ G Y +I + + L+ + +N+ME
Sbjct: 373 TLICGLAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELA 432
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G + D+V N ++S + +++KM ++ G+ +V TY +++++
Sbjct: 433 GVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHA 483
>gi|399107190|gb|AFP20359.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSIFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
Length = 663
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G +AE L+ +M GL+P Y C+I+ + G L + + N M SDG
Sbjct: 518 LIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDG 577
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V +++ +Y L W +KM + G+ + TYN ++++
Sbjct: 578 LPPSAVTYTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 626
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 14/145 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++G C+ G EA L ++R GL P+ Y +I GY RLG LE+ R+ +M
Sbjct: 377 SLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQ 436
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVL--WLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
G D +++ G HN S + + +M G+ YN+ + C+ I L
Sbjct: 437 GCLPDVYTYTILMK--GSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI--CAEI--TL 490
Query: 312 QDLNSNDFPLSILELTEVLNEEEVS 336
D++ + +L EV+ E +S
Sbjct: 491 GDISKS------FQLREVIMLEGIS 509
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 91/211 (43%), Gaps = 33/211 (15%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDD-------- 170
K G ++EA L+ L + G VL Y LID +C+ +++R ++
Sbjct: 384 KAGNQKEA-LLLFGDLRRAGLAPT--VLTYNILIDGYCRLGDLEEARRLKEEMVEQGCLP 440
Query: 171 ---TYARLNQLVNSSSSVYVKRQALKSMISG------------LCE---MGQPHEAENLI 212
TY L + ++ S+ + R+ M+S +C +G ++ L
Sbjct: 441 DVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAEITLGDISKSFQLR 500
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
E + ++G+ Y +I G + G L+D E ++ QM S+G + D + ++ ++ +
Sbjct: 501 EVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQPDCITYTCLIHAHCER 560
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + M G+P S TY ++++
Sbjct: 561 GFLREARKFFNDMISDGLPPSAVTYTVIIHA 591
>gi|399107212|gb|AFP20370.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMALF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|399107206|gb|AFP20367.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 775
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 64/109 (58%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A++L +M+ GL P Y +I GYG+LGLL++ + +M+ G
Sbjct: 258 MIGYMCKEGDMVTAKSLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVG 317
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + + ++ + +L +MK+SG+ +V TY++++++
Sbjct: 318 CEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDA 366
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ + + L + G+ + +M G+ S F Y +I + G + +
Sbjct: 213 VFPKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAK 272
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +QM+ G D V N ++ YG L ++MKD G V TYN+++N
Sbjct: 273 SLFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALIN 330
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 114/276 (41%), Gaps = 48/276 (17%)
Query: 63 KFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD 122
K V P I NAL + P+ AF ++ + S + N + +I L
Sbjct: 314 KDVGCEPDVITYNALINCFCKYEQMPK----AFH-FLHEMKNSGLKPNVVTYSTLIDALC 368
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+ ++A +L+ + ++G E Y +LID+ CK D ++++
Sbjct: 369 KEHMLQQAIKFLLD-MRRVGLSPNEFT--YTSLIDANCKAGY---LSDALKLADEMLQVQ 422
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG--------- 233
V +++ GLC+ G+ EAE+L M G+ P+ Y +++G
Sbjct: 423 VGFNV--VTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVTPNLKTYTALVHGHIKNKRVEN 480
Query: 234 -------------------YGRL--GL-----LEDMERIVNQMESDGTRVDTVCSNMVLS 267
YG + GL LE+ E ++++M++ G R ++V + +
Sbjct: 481 ALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYTIRMD 540
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+Y + + LQ+M D G+ ++ T+ +++
Sbjct: 541 AYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDG 576
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 73/168 (43%), Gaps = 7/168 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ EA L L+ + LG E +V F C LID CK D +AR+
Sbjct: 544 KTGKTVEALNL-LQEMCDLGV-EVTIVTF-CVLIDGLCKKGLVEEAIDYFARMADFNLQP 600
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
++V V ++I GLC+ A+ L +EM+ K + P Y +I G + ++
Sbjct: 601 NNVAV----CTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQE 656
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I ++M G +D ++ N + + ++L +M GI
Sbjct: 657 ALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKGI 704
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G ++G E+ L EEM+ G EP Y +I + + + +++M++
Sbjct: 292 SLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNS 351
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V + ++ + + L + + +L M+ G+ + TY S++++
Sbjct: 352 GLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDA 401
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 24/211 (11%)
Query: 112 KLVAEIIAFLDKQGQREEAE-----TLILETLSKLGSRERELVLF--------------Y 152
KL+A+ A D+ +R T ++ K G+ + L LF Y
Sbjct: 409 KLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTY 468
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LID FCK ++ + N+++ S ++ + +++G C +G EA L
Sbjct: 469 NILIDGFCKTTEMEKANELW---NEMI--SRKIFPNHISYAILVNGYCNLGFVSEAFRLW 523
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+EM KG++P+ +I GY R G L + + +M S+G D++ N +++ +
Sbjct: 524 DEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKG 583
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + KM+ G+ V TYN +LN
Sbjct: 584 EYMDKAFFLINKMETKGLQPDVVTYNVILNG 614
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G +A+ + +M +G+ P Y +I G+ + ++ ++N+ME+
Sbjct: 540 TVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETK 599
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V N++L+ + + L L+KM + GI TY +++N
Sbjct: 600 GLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLING 649
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 81/191 (42%), Gaps = 23/191 (12%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD--------TYARLNQLVN 180
+A+TLIL + + G E+V +S S G D+ +Y + +L
Sbjct: 81 DAQTLILRMIRRSGVSRVEIV-------ESLISMSSTCGVDNLVFDLLIRSYVQARKLNE 133
Query: 181 SSSSVYVKRQ--------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ + + R+ A S++ GL +MG A + E+ G+E + + ++
Sbjct: 134 GTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVN 193
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+ ++D++ + ME G D V N ++++Y L + M G+
Sbjct: 194 ALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKP 253
Query: 293 SVRTYNSVLNS 303
++ TYN+V+N
Sbjct: 254 TLFTYNAVING 264
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 136 ETLSKLGSRERELVLFYCNL-IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
E +++ EL ++ N+ +++ CK D K DD L + ++ +
Sbjct: 171 EVYNEIARSGIELNVYTLNIMVNALCK-DHK--IDDVKPFLIDM--EQKGIFADIVTYNT 225
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C G EA ++ M KGL+P+ F Y +I G + G + + N+M S G
Sbjct: 226 LINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIG 285
Query: 255 TRVDTVCSNMVL 266
DT N +L
Sbjct: 286 LSPDTTTYNTLL 297
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 8/143 (5%)
Query: 150 LFYCN-LIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
L CN +I +C+ D+ + +++ V S Y ++I+G + +
Sbjct: 535 LVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITY------NTLINGFVKGEYMDK 588
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A LI +M KGL+P Y I+ G+ R G +++ E I+ +M G D +++
Sbjct: 589 AFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLIN 648
Query: 268 SYGDHNELSRMVLWLQKMKDSGI 290
Y + L + +M G
Sbjct: 649 GYVSQDNLKEAFRFHDEMLQRGF 671
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 50/121 (41%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ S + + L M++ LC+ + + + + +M KG+ Y +I Y R GLL
Sbjct: 177 ARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLL 236
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ ++N M G + N V++ R +M G+ TYN++
Sbjct: 237 GEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTL 296
Query: 301 L 301
L
Sbjct: 297 L 297
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 10/172 (5%)
Query: 135 LETLSKLGSRERELVLF-YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK--RQA 191
E ++ + + + LF Y +I+ CK Y R + N S+ +
Sbjct: 240 FEVMNSMSGKGLKPTLFTYNAVINGLCKKGR-------YVRAKGVFNEMLSIGLSPDTTT 292
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++ C EA+++ +M +G+ P + +I R G L+ M+
Sbjct: 293 YNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMK 352
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G D V ++++ Y + +S + KM + G V YN++LN
Sbjct: 353 TSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNG 404
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 1/129 (0%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+Y +I GLC+ G +A++L +M GL+P Y C+I+ + GLL +
Sbjct: 519 GIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEA 578
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++N M SDG + V +++ + L W +KM D GI + TYN ++++
Sbjct: 579 RKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 638
Query: 304 -CSTIMSML 311
C T ++L
Sbjct: 639 LCRTGRTLL 647
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%)
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+G H+A L E M +KG+ P Y II G + G L+D + + +M SDG + D +
Sbjct: 502 LGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCIT 561
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ ++ + LS L M G+ SV TY ++++C
Sbjct: 562 YTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTC 604
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SM++G C+ G EA L+ ++R GL P+ Y +I GY RLG LE+ R+ +M
Sbjct: 389 SMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQ 448
Query: 254 GTRVDTVCSNMVLSSYGDHN--ELSRMVLWLQKMKDSGIPFSVRTYNS 299
G D VC+ +L + G H L + +M G+ YN+
Sbjct: 449 GCFPD-VCTYTILMN-GSHKVRNLPMAREFFDEMLSKGLQPDCFAYNT 494
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+DSF K K D+ L ++ + +IS L G A
Sbjct: 243 IVTYNTLLDSFLKEGRK---DEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENA 299
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++ MR+ + S F Y +I G ++ +E + +ME++G V N ++
Sbjct: 300 AKLVDSMRLSK-KASSFTYNPLITALLERGFVQKVEALQMEMENEGIMPTLVTYNAIIHG 358
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ L +M+ G+ + TYNS+LN
Sbjct: 359 LLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNG 393
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 11/195 (5%)
Query: 117 IIAFLDKQGQREEAETLILET-LSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I+FL ++G E A L+ LSK S Y LI + + RGF L
Sbjct: 286 VISFLAREGHLENAAKLVDSMRLSKKASS-----FTYNPLITALLE----RGFVQKVEAL 336
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
Q+ + + ++I GL + Q A+ EMR GL P Y ++ GY
Sbjct: 337 -QMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYC 395
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G L++ ++ + G + N ++ Y L ++M + G V
Sbjct: 396 KAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVC 455
Query: 296 TYNSVLNSCSTIMSM 310
TY ++N + ++
Sbjct: 456 TYTILMNGSHKVRNL 470
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 98/215 (45%), Gaps = 32/215 (14%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD------------S 164
+I L K G+++E L+ S+ G + + + C LID FCK +
Sbjct: 389 LIDGLCKVGRQQEGLGLMERMRSQKGCAP-DTITYNC-LIDGFCKAGEIEKGKELFDEMN 446
Query: 165 KRGFDDTYARLNQLV---------NSSSSVYV--KRQALK-------SMISGLCEMGQPH 206
K G +N LV +S+ + +V +R+ +K ++I+ C +
Sbjct: 447 KEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFE 506
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L EM G P Y +I G+ + G + D ++ +++ G R DTVC N ++
Sbjct: 507 KAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLI 566
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ N+ R+ L++M+++G+ TYN+++
Sbjct: 567 GGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLI 601
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS----VYVKRQALKSMISGLCEMGQPHE 207
Y LI++FC ++ F+ N+++ S S VY ++ISG + G+ +
Sbjct: 492 YTALINAFCNVNN---FEKAMELFNEMLKSGCSPDAIVYY------TLISGFSQAGRMAD 542
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ E++ G+ P Y +I G+ R + ++ +ME G + DT+ N +++
Sbjct: 543 ASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIA 602
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L ++KM +G+ +V TY +V+N+
Sbjct: 603 YASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINA 638
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C + H +++EM GL+P Y +I + G L+ ++++ +M
Sbjct: 564 TLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA 623
Query: 254 GTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G V+++Y G+ NE M ++ S +P + YN ++NS
Sbjct: 624 GVVPTVATYGAVINAYCLNGNGNE--AMEIFKDMKAASKVPPNTVIYNILINS 674
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 4/157 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID CK G L + + S +I G C+ G+ +
Sbjct: 383 VVIYNTLIDGLCKV----GRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKG 438
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L +EM +G+ P+ ++ G R G + + + G + D V ++++
Sbjct: 439 KELFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINA 498
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + N + + +M SG Y ++++ S
Sbjct: 499 FCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFS 535
>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
Length = 796
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 13/211 (6%)
Query: 97 LYMRITEE---SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLFY 152
L +R+ E + + N L+ I L K G+ EEA + + L K LG V
Sbjct: 405 LVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVN----VATS 460
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI C+ ++ + + L +VNS V + R MI G C+ + EA L
Sbjct: 461 NALIHGLCQGNNMK---EATKVLKAMVNSG--VELDRITYNIMIQGCCKASKMDEAIQLR 515
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M +G +P F + ++ Y LG +E++ +++QM+S+G + D V ++ Y
Sbjct: 516 DDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKA 575
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +L ++ +G+ + YN+++
Sbjct: 576 KDMHKANEYLTELMKNGLRPNAVIYNALIGG 606
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 54/102 (52%)
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C +G+ E +L+++M+ +GL+P Y II GY + + + ++ +G R +
Sbjct: 538 CNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNA 597
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V N ++ YG + +S + L MK +GI + TYNS++
Sbjct: 598 VIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLM 639
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 59/112 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C++G+ EA +EM +G+ P+ Y +++ Y + G E+ ++ ++M S G
Sbjct: 673 IIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
D+V N ++S + + + L +MV +M + +YN+ ++ +T
Sbjct: 733 IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGITT 784
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/154 (17%), Positives = 71/154 (46%), Gaps = 7/154 (4%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
++ Y +ID +CK D + + + + ++ +Y ++I G G +
Sbjct: 562 IVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIY------NALIGGYGRNGNISD 615
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +++ M+ G++P+ Y ++Y GL+E+++ + Q + + +++
Sbjct: 616 AIGILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQ 675
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++ V++ ++M GIP + TY +++
Sbjct: 676 GFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLM 709
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 96/234 (41%), Gaps = 33/234 (14%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI LC G+ A ++ E+R G++P+ Y ++ + G +E+ R+ +M
Sbjct: 216 AMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEG 275
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTI 307
R V +++S + + LQ+M+ GI + YN ++ CS
Sbjct: 276 RVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEA 335
Query: 308 MSMLQDLNSNDFPLSILELT----EVLNEEEVSVVKELEDS----------SVLDEAMKW 353
+ + ++ S +++ + E E+ +++ D S+ + + W
Sbjct: 336 LKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAW 395
Query: 354 D-SGETKLDLHGMHLGSAYFIILQWMDEMRNRF-NNEKHVIPAEITVVCGSGKH 405
G +LDL +L+ + EM RF ++ A I +C SGKH
Sbjct: 396 HLRGTGRLDL-----------VLRLIREMLARFLKPNDALMTACIQELCKSGKH 438
>gi|341605775|gb|AEK82990.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605807|gb|AEK83006.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|341605711|gb|AEK82958.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605785|gb|AEK82995.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605787|gb|AEK82996.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605789|gb|AEK82997.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605793|gb|AEK82999.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605795|gb|AEK83000.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Cucumis sativus]
Length = 786
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 61/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC+ G + L +MR GL P Y +I GYG++G LE++ + N+M+ G
Sbjct: 295 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 354
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ Y ++ R + +MK++G+ +V TY++++++
Sbjct: 355 CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 403
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 13/228 (5%)
Query: 63 KFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD 122
K V P I N L + PR AF Y + + + N + +I
Sbjct: 351 KDVGCVPDIITYNGLINCYCKFEKMPR----AFE-YFSEMKNNGLKPNVVTYSTLIDAFC 405
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G + A L ++ + + G E Y +LID+ CK + + + LN ++ +
Sbjct: 406 KEGMMQGAIKLFVD-MRRTGLLPNEFT--YTSLIDANCKAGN---LTEAWKLLNDMLQAG 459
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + +++ GLC+ G+ EAE + M G+ P+ Y +++GY + +ED
Sbjct: 460 --VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMED 517
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+I+ QM + D + ++ + +L L L++MK GI
Sbjct: 518 AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 565
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 10/182 (5%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
NP + II K G+ +A E + +G ++ YC LID CK
Sbjct: 568 NPVISTTIIDAYFKAGKSSDALNFFQE-MQDVGVEAT--IVTYCVLIDGLCKAGIVELAV 624
Query: 170 DTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D + R+ L + + +VY S+I GLC+ A+ L +EM+ +G+ P +
Sbjct: 625 DYFCRMLSLGLQPNVAVYT------SLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFT 678
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I G + G L++ ++++M D ++S + EL + + +M +
Sbjct: 679 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEK 738
Query: 289 GI 290
GI
Sbjct: 739 GI 740
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
K ++ ++ L + G +M G+ PS F Y +I + G LE+ R+
Sbjct: 253 KARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLF 312
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
QM G D V N ++ YG L + +MKD G + TYN ++N
Sbjct: 313 VQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLIN 367
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G A + M GL+P+ Y +I G + +E +++ ++M+ G
Sbjct: 610 LIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRG 669
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D ++ H L ++ + +M + I F + Y S+++ S + Q
Sbjct: 670 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQ-- 727
Query: 315 NSNDFPLSILELTEVLNEEE--VSVVKELEDSSVLDEAMK 352
+ F ++E +L EE + +++E LDEA++
Sbjct: 728 -ARKFFNEMIE-KGILPEEVLCICLLREYYKRGQLDEAIE 765
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 30/136 (22%)
Query: 149 VLFYCNLIDSFCKHD----SKRGFDDTYAR--------LNQLVNSS--------SSVYVK 188
V Y +LID CK++ +K+ FD+ R L++ + + V +
Sbjct: 639 VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLIS 698
Query: 189 R----------QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
R S++SG + G+ H+A EM KG+ P C++ Y + G
Sbjct: 699 RMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRG 758
Query: 239 LLEDMERIVNQMESDG 254
L++ + N+ME G
Sbjct: 759 QLDEAIELKNEMERMG 774
>gi|260765969|gb|ACX50015.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765971|gb|ACX50016.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765973|gb|ACX50017.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765975|gb|ACX50018.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765977|gb|ACX50019.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765979|gb|ACX50020.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765981|gb|ACX50021.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765983|gb|ACX50022.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765985|gb|ACX50023.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765987|gb|ACX50024.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765989|gb|ACX50025.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765991|gb|ACX50026.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765993|gb|ACX50027.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765995|gb|ACX50028.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765997|gb|ACX50029.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260765999|gb|ACX50030.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766001|gb|ACX50031.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766003|gb|ACX50032.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766005|gb|ACX50033.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766007|gb|ACX50034.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766009|gb|ACX50035.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766011|gb|ACX50036.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766013|gb|ACX50037.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766015|gb|ACX50038.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766017|gb|ACX50039.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766019|gb|ACX50040.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766021|gb|ACX50041.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766023|gb|ACX50042.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766025|gb|ACX50043.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766027|gb|ACX50044.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766029|gb|ACX50045.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766031|gb|ACX50046.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766033|gb|ACX50047.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766035|gb|ACX50048.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766037|gb|ACX50049.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766039|gb|ACX50050.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766041|gb|ACX50051.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766043|gb|ACX50052.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766047|gb|ACX50054.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260766049|gb|ACX50055.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780310|gb|ACX50701.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780312|gb|ACX50702.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780318|gb|ACX50705.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780330|gb|ACX50711.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780332|gb|ACX50712.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780338|gb|ACX50715.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780340|gb|ACX50716.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780344|gb|ACX50718.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780346|gb|ACX50719.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780348|gb|ACX50720.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780394|gb|ACX50743.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780396|gb|ACX50744.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780398|gb|ACX50745.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780400|gb|ACX50746.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780402|gb|ACX50747.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780404|gb|ACX50748.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780406|gb|ACX50749.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780408|gb|ACX50750.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780410|gb|ACX50751.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780412|gb|ACX50752.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780414|gb|ACX50753.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780416|gb|ACX50754.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780418|gb|ACX50755.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780420|gb|ACX50756.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780422|gb|ACX50757.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780424|gb|ACX50758.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 83 FKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 65.5 bits (158), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 94/219 (42%), Gaps = 13/219 (5%)
Query: 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
++ S A L+ +TE F + +I K G +A TL + + +
Sbjct: 321 KMLSEADELFTEMTERGVFP-DFYTFTTLINGYSKDGNMNKAVTLFEMMIQR---NLKPD 376
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPH 206
V+ Y LID FCK ++N+L N S +Y + +I+G C MG
Sbjct: 377 VVTYNTLIDGFCKGSEME-------KVNELWNDMISRRIYPNHISYGILINGYCNMGCVS 429
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L +EM KG E + I+ GY R G + ++ M G D + N ++
Sbjct: 430 EAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLI 489
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + R + KM++SG+ V TYN +LN S
Sbjct: 490 NGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQM 250
+++ G C G +A+ + M +KG+ P G Y +I G+ + E+M+R +VN+M
Sbjct: 452 TIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIK---EENMDRAFALVNKM 508
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E+ G D + N++L+ + + L + KM + G+ TY S++N
Sbjct: 509 ENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIERGVNPDRSTYTSLING 561
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V V L MI+ LC+ + ++ + +M KG+ P Y +I Y R GLLE+
Sbjct: 91 SGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEE 150
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M G + N +++ + R L +M G+ TYN +L
Sbjct: 151 AFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLV 210
Query: 303 SC 304
C
Sbjct: 211 EC 212
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V+ Y LI+++C+ ++ + +L++S S +K ++I+GLC+ G+
Sbjct: 132 VVTYNTLINAYCRQGL---LEEAF----ELMDSMSGKGLKPCVFTYNAIINGLCKTGKYL 184
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A+ +++EM G+ P Y ++ R + D ERI ++M S G D V + ++
Sbjct: 185 RAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALI 244
Query: 267 SSYGDHNELSRMVLWLQKMKDSGI 290
+ L + + + + MK++G+
Sbjct: 245 GLLSKNGCLDQALKYFRDMKNAGL 268
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S + V A S++ GL ++G A + +E+ G++ + + +I + +E
Sbjct: 55 SKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIE 114
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + ++ ME G D V N ++++Y L + M G+ V TYN+++
Sbjct: 115 NTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAII 174
Query: 302 NS-CST 306
N C T
Sbjct: 175 NGLCKT 180
>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
Length = 798
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 21/183 (11%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHE 207
+F+ L++ CK + AR + + V V+R + ++I G C G+ E
Sbjct: 484 IFFNTLLNHLCK-------EGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDE 536
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L+E M + G++P+ Y +I GY + G +ED + QM S G V + +L
Sbjct: 537 AAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQ 596
Query: 268 SYGDHNELS---RMVLWLQKMKDSGIPFSVRTYNSVL-----NSCS-TIMSMLQDLNSND 318
+ + LW+ K SGI F + TYN +L N+C+ + + Q+L D
Sbjct: 597 GLFQARRTAAAKELYLWMIK---SGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLID 653
Query: 319 FPL 321
F L
Sbjct: 654 FHL 656
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ LC+ G+ EA + + M +G +P+ Y +++GY G L M +++ M +
Sbjct: 313 TLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRN 372
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N+++ +Y H ++ +L KM+ G+ TY V+++
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDA 422
>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
Length = 761
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G +A + E L + R V+ Y ++I + CK + D L +V +
Sbjct: 208 KEGDSGKAYSTYHEMLDR---RISPDVVTYSSIIAALCK---GQAMDKAMEVLTSMVKNG 261
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE-----YKCIIYGYGRL 237
V + S++ G C GQP EA ++++R G+EP G E Y ++ GY
Sbjct: 262 --VMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATK 319
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G L M +++ M +G D N+++ +Y ++ +L KM+ G+ TY
Sbjct: 320 GALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTY 379
Query: 298 NSVLN 302
+V+
Sbjct: 380 GAVIG 384
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 14/198 (7%)
Query: 110 NPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP V +I L K G+ E+A L E + G +V Y +LI C +
Sbjct: 373 NPDAVTYGAVIGILCKSGRVEDA-MLYFEQMIDEGLSPGNIV--YNSLIHGLCTCNK--- 426
Query: 168 FDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ R +L+ + + S+I C+ G+ E+E L + M G++P
Sbjct: 427 ----WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDII 482
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I GY G +++ ++++ M S G + +TV +++ Y + + ++ ++M
Sbjct: 483 TYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYCKISRMGDALVLFKEM 542
Query: 286 KDSGIPFSVRTYNSVLNS 303
+ SG+ + TYN +L
Sbjct: 543 ESSGVSPDIITYNIILQG 560
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+ + + G +A L+ +V + ++ +I + G+ EA +
Sbjct: 309 YCTLLQGYATKGALVGM---HALLDLMVRNG--IHPDHYVYNILICAYAKQGKVDEAMLV 363
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+MR +GL P Y +I + G +ED QM +G + N ++
Sbjct: 364 FSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCT 423
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+ R + +M D GI + +NS+++S
Sbjct: 424 CNKWERAEELILEMLDRGICLNTIFFNSIIDS 455
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI L ++G+ EA++L GL P+ + Y+ + GLLE+++++ ME +G
Sbjct: 627 MIDALLKVGRNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNG 686
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWL 282
VD+ N ++ E++R +L
Sbjct: 687 CTVDSGMLNFIVRELLQRGEITRAGTYL 714
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 98/238 (41%), Gaps = 17/238 (7%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP I N+L H L R L + R N II K+G+
Sbjct: 408 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDR-----GICLNTIFFNSIIDSHCKEGRV 462
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
E+E L + + ++G + ++ Y LID +C D+ L+ +V SV +
Sbjct: 463 IESEKL-FDLMVRIGVKPD--IITYSTLIDGYCLAGK---MDEAMKLLSGMV----SVGL 512
Query: 188 KRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
K + +++I+G C++ + +A L +EM G+ P Y I+ G + +
Sbjct: 513 KPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 572
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ GT+++ N++L + + Q + + RT+N ++++
Sbjct: 573 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDA 630
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C+ K +D + L++++N + S+I G C G + +
Sbjct: 413 YSILIDSHCE---KGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSGNVSKGQKF 467
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++M V + P Y +I+GY + + D +++N ME + + D V NM+++ +
Sbjct: 468 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H + +KM GI TY S++N
Sbjct: 528 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 559
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 141 LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
L R R ++ Y LID C+ +D + ++ S ++ +I C
Sbjct: 367 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-----SREIFPNHVTYSILIDSHC 421
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
E GQ +A ++EM KG+ P+ Y II GY R G + ++ + +M + D +
Sbjct: 422 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLI 481
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
N ++ Y +++ L M+ + V TYN ++N S
Sbjct: 482 TYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +G+ EA + +EMR +G++P + C+I + R G ++ + +M G
Sbjct: 206 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 265
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V MV+ + +S + +M G V TYN++LN
Sbjct: 266 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 314
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +I G+ A + EMR GL P G Y +I G+ R GL+ D R+ ++M
Sbjct: 237 SFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM 296
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +L+ L L +M++ G+P + T+ ++++
Sbjct: 297 VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 349
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ CK +R D LN++ V ++I G C G+ +A
Sbjct: 305 VVTYNTLLNGLCK---ERRLLDAEGLLNEM--RERGVPPDLCTFTTLIHGYCIEGKLDKA 359
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M + L P Y +I G R G L+ + + M S + V ++++ S
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ +L +M + GI ++ TYNS++
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 454
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ GLC G +A + +EM G+ P + +I G+ R+G +E+ +I +M
Sbjct: 170 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 229
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V + ++ + ++ + +L++M+ G+ Y V+
Sbjct: 230 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 279
>gi|341605777|gb|AEK82991.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605779|gb|AEK82992.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605809|gb|AEK83007.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605811|gb|AEK83008.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 817
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L D + D G + Y + + + + +++GLC+ G+ +AE +
Sbjct: 319 YSILFDGLLRCDDGNGAMELYEQATE-----KGIRINNYTGSILLNGLCKQGKVEKAEEI 373
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++ GL Y + GY R+G + + +MES G R +++ N ++ + D
Sbjct: 374 LKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIERMESFGLRPNSITFNSLIDKFCD 433
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E+ + W++KM + G+ SV TYN++++
Sbjct: 434 MKEMDKAEEWVKKMAEKGVTPSVETYNTLIDG 465
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 83/172 (48%), Gaps = 7/172 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
ILE + ++G + V+ Y +LI+ CK D K + L ++ V Q
Sbjct: 478 ILEQMEEIGVKPN--VVSYGSLINCLCK-DGK--ILEAEIVLRDMI--CRGVLPNAQVYN 530
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I G C +G+ +A +EM + P+ Y +I G + G L + E + Q+ S
Sbjct: 531 MLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSS 590
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D + N ++S Y + +S+ + + MK+ GI +VRTY+ +++ CS
Sbjct: 591 GHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCS 642
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 100/212 (47%), Gaps = 10/212 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A LY + TE+ + N + ++ L KQG+ E+AE IL+ ++ G E++ Y
Sbjct: 335 AMELYEQATEKG-IRINNYTGSILLNGLCKQGKVEKAEE-ILKKFTENGLVADEVI--YN 390
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
++ +C+ T R+ +S+ S+I C+M + +AE ++
Sbjct: 391 TFVNGYCRIGDMNKAILTIERMESFGLRPNSI-----TFNSLIDKFCDMKEMDKAEEWVK 445
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M KG+ PS Y +I GYG+L + +I+ QME G + + V +++
Sbjct: 446 KMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDG 505
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLN-SC 304
++ + L+ M G+ + + YN +++ SC
Sbjct: 506 KILEAEIVLRDMICRGVLPNAQVYNMLIDGSC 537
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LID +CK G D ++ + + SV S++SGLC+M + EA
Sbjct: 246 IVTYNTLIDGYCK----VGELDAAFKMRERM-KEKSVAPNIITFNSLLSGLCKMRKMKEA 300
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L++EM V G P G+ Y + G R + Q G R++ +++L+
Sbjct: 301 RSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNG 360
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++ + L+K ++G+ YN+ +N I M
Sbjct: 361 LCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDM 402
Score = 45.4 bits (106), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK +D L Q+ +S S V S+ISG G + L
Sbjct: 564 YNVLIDGLCKKGKLTEAEDF---LTQITSSGHSPDV--ITYNSLISGYANAGNVSKCLGL 618
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E M+ G++P+ Y +I G + G+ E +E++ N+M D V N ++ Y +
Sbjct: 619 YETMKNLGIKPTVRTYHPLISGCSKEGI-ELVEKLYNEMLQMNLLPDRVVYNAMIHCYAE 677
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ Q M D GI TYNS++
Sbjct: 678 IGNTQKAYSLHQGMLDQGIHPDKMTYNSLI 707
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +MI E+G +A +L + M +G+ P Y +I G+ R G L +++ +VN
Sbjct: 665 RVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVN 724
Query: 249 QMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
M++ + DT ++++ + D + S +W ++M
Sbjct: 725 NMKAKELAPKADTY--DILVKGHCDLKDFSGAYVWYREM 761
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ MR +G+ P+ F Y +I G R + D E++ ++M + V N ++ Y
Sbjct: 198 FLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYC 257
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI------MSMLQDLNSNDF 319
EL ++MK+ + ++ T+NS+L+ + S+L+++ N F
Sbjct: 258 KVGELDAAFKMRERMKEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGF 312
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C+ K D+ +A L+++VN + S+I G C G + +
Sbjct: 477 YSILIDSHCE---KGQVDNAFAFLDEMVNKG--IVPNIMTYNSIIKGYCRSGNVSKGQQF 531
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +MR + P Y +I+GY + G + + ++ ME++ + D V NM++S +
Sbjct: 532 LPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSV 591
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H + +KM GI TY S++N
Sbjct: 592 HGNMQEADWVYKKMGARGIEPDRYTYMSMING 623
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 9/169 (5%)
Query: 144 RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCE 201
R R ++ Y LID C+ + N+L + S ++ +I CE
Sbjct: 434 RLRPDIVTYNTLIDGMCRQGD-------LGKANELWDDMHSREIFPNHVTYSILIDSHCE 486
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
GQ A ++EM KG+ P+ Y II GY R G + ++ + +M D D +
Sbjct: 487 KGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKVMPDLIT 546
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
N ++ Y ++ L+ M++ + TYN +++ S +M
Sbjct: 547 YNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNM 595
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +I G+ A + EMR GL P G Y +I G+ R GL+ + R+ ++M
Sbjct: 301 SFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEM 360
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G D V N +L+ LS L +MK+ G+P + T+ ++++
Sbjct: 361 VAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHG 413
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ CK +R D LN++ V ++I G C G +A
Sbjct: 369 VVTYNTLLNGLCK---ERRLSDAEELLNEM--KERGVPPDLCTFTTLIHGYCRDGNIEKA 423
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + + L P Y +I G R G L + + M S + V ++++ S
Sbjct: 424 LQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDS 483
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ +L +M + GI ++ TYNS++
Sbjct: 484 HCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKG 518
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G EA + +EM G P Y ++ G + L D E ++N+M+ G
Sbjct: 340 VIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERG 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D ++ Y + + + + + D + + TYN++++
Sbjct: 400 VPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDG 448
>gi|356508736|ref|XP_003523110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 680
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/150 (29%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 156 IDSFCKHDSKRGF----DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
ID +D GF D T A + S+ + K L ++I L G+ HEAE L
Sbjct: 239 IDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEAL 298
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE+R GLEP Y ++ GY R G L+D E +V++ME G + D ++++ Y
Sbjct: 299 FEEIRENGLEPRTRAYNALLKGYVRTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDVYAH 358
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ L++M+ S + + ++ +L
Sbjct: 359 AGRWESARIVLKEMEASNVQPNSYVFSRIL 388
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 105/237 (44%), Gaps = 18/237 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S Q N + + I+A +G+ +++ ++ + S +R FY +ID+F K+
Sbjct: 373 EASNVQPNSYVFSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRH---FYNVMIDTFGKY 429
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ D A +++ S + ++I C+ G+ AE L EM+ +G P
Sbjct: 430 NC---LDHAMATFERML--SEGIPPDIVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSP 484
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G E + +++M+S G + +++ ++ YG S + L
Sbjct: 485 CITTYNIMINSMGEQQRWEQVTAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECL 544
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPL--------SILELTEVLN 331
+ +K +G + YN+++N+ + L +L N F L S+L L ++N
Sbjct: 545 EVLKSTGFKPTSTMYNALINAYA--QRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 599
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 110 NPK---LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
NPK LVA I+A L G+ EAE L E + + G R Y L+ + + S +
Sbjct: 273 NPKPSTLVAVILA-LGNSGRTHEAEAL-FEEIRENGLEPRTRA--YNALLKGYVRTGSLK 328
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + + + + V Q +I G+ A +++EM ++P+ +
Sbjct: 329 DAEFVVSEMEK-----AGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYV 383
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ I+ Y G + +++ M+S G + D N+++ ++G +N L + ++M
Sbjct: 384 FSRILANYRDKGEWQKSFQVLKDMKSSGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML 443
Query: 287 DSGIPFSVRTYNSVLN 302
GIP + T+N++++
Sbjct: 444 SEGIPPDIVTWNTLID 459
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 90/208 (43%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEA-ETLILETLSKLGSRERELVLFYCNL 155
LY I E + + L+ +II K G A L + + L + LV L
Sbjct: 228 LYAEI-ETDKIEIDGHLMNDIIVGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILAL 286
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
+S H+++ F++ R N L + +A +++ G G +AE ++ EM
Sbjct: 287 GNSGRTHEAEALFEEI--RENGLE-------PRTRAYNALLKGYVRTGSLKDAEFVVSEM 337
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
G++P Y +I Y G E ++ +ME+ + ++ + +L++Y D E
Sbjct: 338 EKAGVKPDEQTYSLLIDVYAHAGRWESARIVLKEMEASNVQPNSYVFSRILANYRDKGEW 397
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ MK SG+ YN ++++
Sbjct: 398 QKSFQVLKDMKSSGVQPDRHFYNVMIDT 425
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/188 (18%), Positives = 79/188 (42%), Gaps = 11/188 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ + LID CK ++ ++ + Q S MI+ + E + +
Sbjct: 451 IVTWNTLIDCHCKSGRHDMAEELFSEMQQRGYSPCIT-----TYNIMINSMGEQQRWEQV 505
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ +M+ +GL+P+ Y ++ YG+ G D + ++S G + + N ++++
Sbjct: 506 TAFLSKMQSQGLQPNSITYTTLVDVYGKSGRFSDAIECLEVLKSTGFKPTSTMYNALINA 565
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFPLS 322
Y V + M G+ S+ NS++N+ + ++LQ + N+
Sbjct: 566 YAQRGLSELAVNAFRLMTTEGLTPSLLALNSLINAFGEDRRDAEAFAVLQYMKENNIEPD 625
Query: 323 ILELTEVL 330
++ T ++
Sbjct: 626 VVTYTTLM 633
>gi|341605695|gb|AEK82950.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 98/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + + GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCQFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ ++
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMMLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 99/205 (48%), Gaps = 11/205 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P +A +I L + G+ EA+ + + S+ G E+ Y LID +CK
Sbjct: 113 PDFIAYTAVICGLCRCGKMMEADKVFNKMFSR-GVEPDEVT--YTTLIDGYCKSGE---M 166
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ ++ NQ+V S + V ++ GLC++GQ A L+ EM KGL+ + Y
Sbjct: 167 EKAFSLHNQMVQSGLTPNV--VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYN 224
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ G + G + +++ +ME G DT+ ++ +Y E+ + L++M D
Sbjct: 225 SLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDR 284
Query: 289 GIPFSVRTYNSVLNSCSTIMSMLQD 313
G+ +V T+N ++N + ML+D
Sbjct: 285 GLQPTVITFNVLMNG-FCMSGMLED 308
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+NQ + + VY ++I G C++G A L +EM + + P Y +I G
Sbjct: 72 INQGIVPDTVVYT------TLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGL 125
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G + + +++ N+M S G D V ++ Y E+ + +M SG+ +V
Sbjct: 126 CRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNV 185
Query: 295 RTYNSV------LNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
TY ++ L T +L ++ L+I ++N
Sbjct: 186 VTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVN 228
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 54/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G C G+ + LI+EM++KGL+P+ + Y II + G ++D ER++ +M +
Sbjct: 15 TVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQ 74
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G DTV ++ + + +M+ I Y +V+
Sbjct: 75 GIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVI 122
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 30/183 (16%)
Query: 149 VLFYCNLIDSFCK-----------HD-SKRGFDDTYARLNQLVNSSSSVYVKRQALKSM- 195
V+ Y L D CK H+ +G N LVN RQA+K M
Sbjct: 185 VVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLME 244
Query: 196 ---ISGL--------------CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
++G+ C+ G+ +A L+ EM +GL+P+ + ++ G+ G
Sbjct: 245 EMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSG 304
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+LED ER++ M G +T N ++ Y N + + M G+ TYN
Sbjct: 305 MLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYN 364
Query: 299 SVL 301
++
Sbjct: 365 ILI 367
>gi|399107192|gb|AFP20360.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 109/248 (43%), Gaps = 43/248 (17%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+R+ E +P +VA +I K+G +A L E + + + + Y +++
Sbjct: 205 LRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPD---FVTYSSVV 261
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNS---------SSSVY-----------------VKRQ 190
+ CK R D A L Q+VN ++ +Y ++RQ
Sbjct: 262 HALCK---ARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQ 318
Query: 191 AL-------KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++ ++ LC+ G+ EA ++ + M +KG P F Y ++ GY G L DM
Sbjct: 319 SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDM 378
Query: 244 ERIVNQMESDGTRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + M DG +C+ N+++ +Y + L + ++ +M+D G+ +V TY +V+
Sbjct: 379 TDLFDLMLGDGI-APVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIA 437
Query: 303 SCSTIMSM 310
+ I M
Sbjct: 438 ALCRIGKM 445
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 18/233 (7%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
QG+ +A+ L L +++ G+ V+ Y +ID F K D + + Q
Sbjct: 195 QGKSGQADDL-LRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPD 253
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S++ LC+ +AE + +M KG+ P+ + Y +IYGY G ++
Sbjct: 254 FV-----TYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN- 302
R+ +M D V NM++ S + ++ M G V +YN +LN
Sbjct: 309 VRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 368
Query: 303 ----SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
C M+ L DL D ++ VL +K + +LD+AM
Sbjct: 369 YATKGCLVDMTDLFDLMLGDGIAPVICTFNVL-------IKAYANCGMLDKAM 414
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 10/155 (6%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEA 208
++C LI FC H S + +L++ ++ +++ S+I+ LC++G+ +A
Sbjct: 467 YHC-LIQGFCTHGS-------LLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDA 518
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+N+ + GL P+ Y ++ GY +G +E R+ + M S G + V +++
Sbjct: 519 QNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNG 578
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + ++M GI S YN +++
Sbjct: 579 YCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 613
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLV 179
G +A+ LI E ++ ++VLF ++I++ CK D++ FD T +N +
Sbjct: 477 HGSLLKAKELISEIMNN--GMHLDIVLF-SSIINNLCKLGRVMDAQNIFDLT---VNVGL 530
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ ++ VY ++ G C +G+ +A + + M G+EP+ Y ++ GY ++G
Sbjct: 531 HPTAVVY------SMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGR 584
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+++ + +M G + T+ N+++ + + +M +SGI + TY+
Sbjct: 585 IDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSI 644
Query: 300 VL-----NSC-STIMSMLQDLNSNDFPLSILELTEVL 330
VL N C + + ++L + + + I+ L ++
Sbjct: 645 VLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMI 681
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
VL Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 429 VLTYTTVIAALCRIGK---MDDAMEKFNQMIDQG--VAPDKYAYHCLIQGFCTHGSLLKA 483
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G V +M++
Sbjct: 484 KELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDG 543
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
Y ++ + + M +GI + Y +++N I
Sbjct: 544 YCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKI 582
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 58/129 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P+ Y +I R+G ++D NQM G
Sbjct: 400 LIKAYANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQG 459
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + ++S++N+ + ++
Sbjct: 460 VAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQ 519
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 520 NIFDLTVNV 528
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI+G+ + + EA++L + GL P
Sbjct: 653 RCFDEAIFLFKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVV 710
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G D+ N V+ NE+ R +L K+
Sbjct: 711 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 770
Query: 286 KD 287
+
Sbjct: 771 DE 772
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 11/120 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+ LC +G+ +A +M +G+ P + Y C+I G+ G L + +++++ ++
Sbjct: 434 TVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNN 493
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G +D V + ++ N L + L ++ D+ F + T N L+ + + SML D
Sbjct: 494 GMHLDIVLFSSII------NNLCK----LGRVMDAQNIFDL-TVNVGLHPTAVVYSMLMD 542
>gi|399107204|gb|AFP20366.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107210|gb|AFP20369.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|356517404|ref|XP_003527377.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Glycine max]
Length = 696
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 10/172 (5%)
Query: 156 IDSFCKHDSKRGF----DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
ID +D GF D T A + S+ + K L ++I L G+ HEAE L
Sbjct: 255 IDGHLMNDIILGFSKAGDPTRAMRFLAMAQSNGLNPKPSTLVAVILALGNSGRTHEAEAL 314
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE+R G EP Y ++ GY + G L+D E +V++ME G + D ++++ +Y
Sbjct: 315 FEEIRENGSEPRTRAYNALLKGYVKTGSLKDAEFVVSEMEKAGVKPDEQTYSLLIDAYAH 374
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIMSMLQDLNSN 317
+ L++M+ S + + Y+ +L S +L+D+ SN
Sbjct: 375 AGRWESARIVLKEMEASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSN 426
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 110 NPK---LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
NPK LVA I+A L G+ EAE L E + + GS R Y L+ + K S +
Sbjct: 289 NPKPSTLVAVILA-LGNSGRTHEAEAL-FEEIRENGSEPRTRA--YNALLKGYVKTGSLK 344
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + + + + V Q +I G+ A +++EM +EP+ +
Sbjct: 345 DAEFVVSEMEK-----AGVKPDEQTYSLLIDAYAHAGRWESARIVLKEMEASNVEPNSYV 399
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y I+ Y G + +++ M+S+G + D N+++ ++G +N L + ++M
Sbjct: 400 YSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRHFYNVMIDTFGKYNCLDHAMATFERML 459
Query: 287 DSGIPFSVRTYNSVLN 302
GI T+N+++N
Sbjct: 460 SEGIRPDTVTWNTLIN 475
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 106/237 (44%), Gaps = 18/237 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S + N + + I+A +G+ +++ ++ + S +R FY +ID+F K+
Sbjct: 389 EASNVEPNSYVYSRILASYRDKGEWQKSFQVLKDMKSNGVQPDRH---FYNVMIDTFGKY 445
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ D A +++ S + ++I+ C+ G+ + AE L EM+ +G P
Sbjct: 446 NC---LDHAMATFERML--SEGIRPDTVTWNTLINCHCKSGRHNMAEELFGEMQQRGYSP 500
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G E + +++M+S G +++ ++ YG S + L
Sbjct: 501 CITTYNIMINSMGEQQRWEQVSLFLSKMQSQGLLPNSITYTTLVDVYGKSGRFSDAIECL 560
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPL--------SILELTEVLN 331
+ +K +G + YN+++N+ + L +L N F L S+L L ++N
Sbjct: 561 EVLKSTGFKPTSTMYNALINAYA--QRGLSELAVNAFRLMTTEGLTPSLLALNSLIN 615
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 48/101 (47%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +A +E ++ G +P+ Y +I Y + GL E M ++G +
Sbjct: 551 GRFSDAIECLEVLKSTGFKPTSTMYNALINAYAQRGLSELAVNAFRLMTTEGLTPSLLAL 610
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++ I V TY +++ +
Sbjct: 611 NSLINAFGEDRRDAEAFAVLQYMKENNIEPDVVTYTTLMKA 651
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +L+D FCK + DD L +V V ++I GLC+ + EA
Sbjct: 127 VMTFNSLVDGFCKRGN---VDDARKLLGIMVAKGMRPNV--VTYSALIDGLCKSQKFLEA 181
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++EEM+ G+ P F Y +I+G + +E+ E+++ +M G D V + ++ +
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L LQ+M+ V TYN+V++
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDG 276
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II K G+ EA+ + E + R+ V+ Y +ID CK + L+
Sbjct: 238 IIHAFCKSGKLLEAQKTLQEMRKQ---RKSPDVVTYNTVIDGLCKLGK---IAEAQVILD 291
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+ S V ++I+GLC+ EA+ L++ M G P Y II G +
Sbjct: 292 QM-QESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCK 350
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE+ E ++ M+ G + V ++S ++ +++M+++G P ++ T
Sbjct: 351 CGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVT 410
Query: 297 YNSVLNS 303
YN+++N
Sbjct: 411 YNTMVNG 417
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 11/202 (5%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E F N ++ K+G ++A L+ ++K G R V+ Y LID CK
Sbjct: 120 EGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAK-GMRPN--VVTYSALIDGLCKS- 175
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ F + L ++ +S V ++I GLC+ + EAE ++ M G P
Sbjct: 176 --QKFLEAKEVLEEM--KASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y II+ + + G L + ++ + +M D V N V+ +++ + L
Sbjct: 232 VVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILD 291
Query: 284 KMKDSG--IPFSVRTYNSVLNS 303
+M++SG +P V TY++V+N
Sbjct: 292 QMQESGDVLP-DVVTYSTVING 312
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 91/189 (48%), Gaps = 9/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ EA+ +IL+ + + G ++V Y +I+ CK D + L+
Sbjct: 273 VIDGLCKLGKIAEAQ-VILDQMQESGDVLPDVVT-YSTVINGLCKSDM---LVEAQKLLD 327
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + + V ++I GLC+ G+ EAE L++ M+ G P+ Y +I G +
Sbjct: 328 RMCKAGCNPDV--VTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCK 385
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS--V 294
+++ ER++ +M + G + V N +++ + +Q+MKD S
Sbjct: 386 ARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDA 445
Query: 295 RTYNSVLNS 303
TY +++N+
Sbjct: 446 ATYRTIVNA 454
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C G H A L+EEM+ G P F + II G D++ ++ + S G +
Sbjct: 1 CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAG---DLDGAMDHLRSMGCDPNV 57
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V +++++ +L + L++M++ G P ++ TYN ++++
Sbjct: 58 VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDA 101
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C+ K +D + L++++N + S+I G C G + +
Sbjct: 474 YSILIDSHCE---KGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSGNVSKGQKF 528
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++M V + P Y +I+GY + + D +++N ME + + D V NM+++ +
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H + +KM GI TY S++N
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 620
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 141 LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
L R R ++ Y LID C+ +D + ++ S ++ +I C
Sbjct: 428 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-----SREIFPNHVTYSILIDSHC 482
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
E GQ +A ++EM KG+ P+ Y II GY R G + ++ + +M + D +
Sbjct: 483 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLI 542
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
N ++ Y +++ L M+ + V TYN ++N S
Sbjct: 543 TYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +G+ EA + +EMR +G++P + C+I + R G ++ + +M G
Sbjct: 267 LIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFG 326
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V MV+ + +S + +M G V TYN++LN
Sbjct: 327 LVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 375
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 52/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +I G+ A + EMR GL P G Y +I G+ R GL+ D R+ ++M
Sbjct: 298 SFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEM 357
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +L+ L L +M++ G+P + T+ ++++
Sbjct: 358 VGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 410
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ CK +R D LN++ V ++I G C G+ +A
Sbjct: 366 VVTYNTLLNGLCK---ERRLLDAEGLLNEM--RERGVPPDLCTFTTLIHGYCIEGKLDKA 420
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M + L P Y +I G R G L+ + + M S + V ++++ S
Sbjct: 421 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ +L +M + GI ++ TYNS++
Sbjct: 481 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 515
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ GLC G +A + +EM G+ P + +I G+ R+G +E+ +I +M
Sbjct: 231 SVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHR 290
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V + ++ + ++ + +L++M+ G+ Y V+
Sbjct: 291 GIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGG 340
>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At2g02150-like [Cucumis
sativus]
Length = 822
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 61/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC+ G + L +MR GL P Y +I GYG++G LE++ + N+M+ G
Sbjct: 236 MIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVG 295
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ Y ++ R + +MK++G+ +V TY++++++
Sbjct: 296 CVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDA 344
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 98/228 (42%), Gaps = 13/228 (5%)
Query: 63 KFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD 122
K V P I N L + PR AF Y + + + N + +I
Sbjct: 292 KDVGCVPDIITYNGLINCYCKFEKMPR----AFE-YFSEMKNNGLKPNVVTYSTLIDAFC 346
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G + A L+ + + + G E Y +LID+ CK + + + LN ++ +
Sbjct: 347 KEGMMQGAIKLLXD-MRRTGLLPNEFT--YTSLIDANCKAGN---LTEAWKLLNDMLQAG 400
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + +++ GLC+ G+ EAE + M G+ P+ Y +++GY + +ED
Sbjct: 401 --VKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMED 458
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+I+ QM + D + ++ + +L L L++MK GI
Sbjct: 459 AMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 506
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 49/115 (42%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
K ++ ++ L + G +M G+ PS F Y +I + G LE+ R+
Sbjct: 194 KARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLF 253
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
QM G D V N ++ YG L + +MKD G + TYN ++N
Sbjct: 254 VQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLIN 308
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 78/182 (42%), Gaps = 10/182 (5%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
NP + II K G+ +A E + +G ++ YC LID C+
Sbjct: 509 NPVISTTIIDAYFKAGKSSDALNFFQE-MQDVGVEAT--IVTYCVLIDGLCEAGIVELAV 565
Query: 170 DTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D + R+ L + + +VY S+I GLC A+ L +EM+ +G+ P +
Sbjct: 566 DYFCRMLSLGLQPNVAVYT------SLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFT 619
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I G + G L++ ++++M D ++S + EL + + +M +
Sbjct: 620 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEK 679
Query: 289 GI 290
GI
Sbjct: 680 GI 681
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 6/160 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLCE G A + M GL+P+ Y +I G +E +++ ++M+ G
Sbjct: 551 LIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRG 610
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D ++ H L ++ + +M + I F + Y S+++ S + Q
Sbjct: 611 MTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQ-- 668
Query: 315 NSNDFPLSILELTEVLNEEE--VSVVKELEDSSVLDEAMK 352
+ F ++E +L EE + +++E LDEA++
Sbjct: 669 -ARKFFNEMIE-KGILPEEVLCICLLREYYKRGQLDEAIE 706
>gi|302808035|ref|XP_002985712.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
gi|300146621|gb|EFJ13290.1| hypothetical protein SELMODRAFT_181879 [Selaginella moellendorffii]
Length = 447
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ LC+ GQPHEA L+ EM KG P+ Y +I G+ +L L+++ ++ +M
Sbjct: 104 TLVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQR 163
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G R D + M+L + +N + L ++ +V TYNS+ + ST
Sbjct: 164 GCRADVITYTMILDIFCKNNSIDEAYRLLNALEKR----NVVTYNSLFTALST 212
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 104/243 (42%), Gaps = 44/243 (18%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VNS 181
+R + ++L+ +S+ G R V+ Y ++D FCK++S D+ Y LN L V +
Sbjct: 148 ERLDEVLMLLKEMSQRGCRAD--VITYTMILDIFCKNNS---IDEAYRLLNALEKRNVVT 202
Query: 182 SSSVYVK---------RQAL------------------KSMISGLCEMGQPHEAENLIEE 214
+S++ +AL ++++ LC+ + EA ++
Sbjct: 203 YNSLFTALSTAEGDRTTEALSLLEKMIQEGTRPNQVNYRTVLLMLCKNSRLDEAYQVLLS 262
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G + YK ++ + G D ++ +M G +DT N+V+ + +
Sbjct: 263 MYSQGCKTDDVSYKILVVAFANAGRTYDSLELLGRMLGSGYILDTKTMNVVIHKFCKAGD 322
Query: 275 LSRMVLWLQKMKDSG-IPFSVRTYNSVLNS-C-----STIMSMLQDLNSNDFPLSILELT 327
L + M G IP +V TYN+++ + C T + +L + DF +++
Sbjct: 323 LHEAHQLFKSMYQRGSIPSNV-TYNTLIGAFCKAQQPDTAVKLLHQMIQADFKPNVITYN 381
Query: 328 EVL 330
++
Sbjct: 382 SII 384
>gi|224083253|ref|XP_002306972.1| predicted protein [Populus trichocarpa]
gi|222856421|gb|EEE93968.1| predicted protein [Populus trichocarpa]
Length = 709
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 66/125 (52%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V S + VK L ++I L G+ EAE + EEMR GL+P Y ++ GY + G
Sbjct: 295 VVQGSGLSVKTATLVAVIWALGNCGRTVEAEAIFEEMRDNGLKPRTRAYNALLRGYVKAG 354
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
LL+D E +V++ME G + + ++ +YG+ + L++M+ S + + ++
Sbjct: 355 LLKDAEFVVSEMERSGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFS 414
Query: 299 SVLNS 303
+L+S
Sbjct: 415 RILSS 419
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 8/201 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S Q N + + I++ +G+ +++ +L + G R + FY +ID+F K
Sbjct: 402 EASNVQPNAYVFSRILSSYRDKGEWQKSFQ-VLREMENSGVRPDRV--FYNVMIDTFGKF 458
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ D A ++++ S + ++I C G+ AE L EEM G P
Sbjct: 459 NC---LDHAMATFDRML--SEGIEPDTVTWNTLIDCHCRAGKHDRAEELFEEMMEGGYSP 513
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ +I +G +D++ ++ M S G ++V ++ YG + + L
Sbjct: 514 CNTTFNIMINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECL 573
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
MK +G+ S YN+++N+
Sbjct: 574 DDMKAAGLKPSSTMYNALINA 594
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 67/142 (47%), Gaps = 6/142 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ + + + +NL+ MR +GL P+ Y +I YG+ G D ++ M++ G
Sbjct: 521 MINSFGDQERWDDVKNLLAHMRSQGLVPNSVTYTTLIDIYGKSGRFNDAIECLDDMKAAG 580
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIM 308
+ + N ++++Y + V + M+ G+ S+ NS++N+ +
Sbjct: 581 LKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVDGLKPSLLALNSLINAFGEDRRDAEAF 640
Query: 309 SMLQDLNSNDFPLSILELTEVL 330
++LQ + ND ++ T ++
Sbjct: 641 TVLQYMKENDLKPDVVTYTTLM 662
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 56/120 (46%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V Q +I G+ A +++EM ++P+ + + I+ Y G +
Sbjct: 369 SGVSPNEQTYSFLIDAYGNAGRWESARIVLKEMEASNVQPNAYVFSRILSSYRDKGEWQK 428
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ +ME+ G R D V N+++ ++G N L + +M GI T+N++++
Sbjct: 429 SFQVLREMENSGVRPDRVFYNVMIDTFGKFNCLDHAMATFDRMLSEGIEPDTVTWNTLID 488
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I + G+ ++A +++M+ GL+PS Y +I Y + GL E M D
Sbjct: 555 TLIDIYGKSGRFNDAIECLDDMKAAGLKPSSTMYNALINAYAQRGLSEQAVSAFRAMRVD 614
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + N +++++G+ + LQ MK++ + V TY +++ +
Sbjct: 615 GLKPSLLALNSLINAFGEDRRDAEAFTVLQYMKENDLKPDVVTYTTLMKA 664
>gi|341605803|gb|AEK83004.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605805|gb|AEK83005.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605823|gb|AEK83014.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 9/200 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V + +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYXV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVL 301
++M ++ G +V TY ++
Sbjct: 181 KRMEEEEGCDQTVYTYTILI 200
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V +V++ + + + + Q + +G+ + Y+S+++
Sbjct: 83 FKPDVVTYXVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 131
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 9/164 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V + +ID +CK + D QLV + A+ S+++GLC+ G+
Sbjct: 359 VFTFNTMIDGYCK---RLKLDSAL----QLVERMWMYGIAPDAITYNSVLNGLCKAGKAK 411
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E EEM +KG P+ Y +I + ++ LE+ ++ +M DG DT+ N ++
Sbjct: 412 EVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLI 471
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + +L L QK+ + G + T+N ++ + S+ ++M
Sbjct: 472 HGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNM 515
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNS 181
K+ +EA L+ + + K +R + YC+LI+ C D +R +L N
Sbjct: 231 KRDMLQEATELLKDAIFKGFVPDR---VTYCSLINGLCAEGDVERAL--------ELFNE 279
Query: 182 SSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ + +K + S++ GLC G A ++ EM G P + Y +I G ++G
Sbjct: 280 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGN 339
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ D ++N G D N ++ Y +L + +++M GI TYNS
Sbjct: 340 ISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNS 399
Query: 300 VLNS 303
VLN
Sbjct: 400 VLNG 403
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 12/182 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR--LNQLVNS 181
+G R E ++E++ + + V+ Y L+ CK DSK Y R +NQ
Sbjct: 162 EGGRLEEAVALVESMDAYIAPD---VVTYNTLMRGLCK-DSKVQEAAQYLRRMMNQGCIP 217
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
Y ++I G C+ EA L+++ KG P Y +I G G +E
Sbjct: 218 DDFTY------NTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVE 271
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ N+ ++ + D V N ++ + + + +M + G + TYN V+
Sbjct: 272 RALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVI 331
Query: 302 NS 303
N
Sbjct: 332 NG 333
>gi|222613030|gb|EEE51162.1| hypothetical protein OsJ_31934 [Oryza sativa Japonica Group]
Length = 404
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK+ + + + Q ++S V S+ISGLC G+ E L+EE
Sbjct: 205 LINGYCKNSNTAAAVRVFEEMKQQGIAASVV-----TYNSLISGLCSEGKVEEGVKLMEE 259
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M GL P+ + C++ G+ + G++ D ++ M D V N+++ Y +
Sbjct: 260 MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGK 319
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + M GI +V TYN ++ S
Sbjct: 320 MEDAMAVKEAMAKKGISPNVTTYNCLITGFS 350
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQMESDGTRVD 258
+GQ +A ++ ++++ GL PS Y +I GY G G + ++ ++ +M G
Sbjct: 139 IGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPT 198
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
V ++++ Y ++ + V ++MK GI SV TYNS+++ CS
Sbjct: 199 AVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 246
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 194 SMISGLCEMGQP---HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
S+I G C+ G + + L++EM G+ P+ + +I GY + R+ +M
Sbjct: 166 SLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEM 225
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMS 309
+ G V N ++S ++ V +++M+D G+ + T+ VL C
Sbjct: 226 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK--G 283
Query: 310 MLQDLNSNDFPLSILELTEVLNEEEVSV----------VKELEDSSVLDEAM 351
M+ D +ND+ I +TE E +V + + ++ED+ + EAM
Sbjct: 284 MMAD--ANDW---IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 330
>gi|341605725|gb|AEK82965.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+ +++ V ++ +++GLC+ G+ EA + + R GL
Sbjct: 66 GS---VEDAIRLLHXMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 545
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 114/261 (43%), Gaps = 24/261 (9%)
Query: 110 NPKLVAEIIAF--LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP + I L K+G+ +EAE ++ + + + V+ Y L+D +C +
Sbjct: 265 NPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD---VVVYSTLMDGYCLVNEVNN 321
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ + Q+ V MI+GLC++ + EA NL EE+ K + P Y
Sbjct: 322 AKRVFYTMTQM-----GVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTY 376
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I + G + + + ++M G D + N ++ + + L R + KMKD
Sbjct: 377 TSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKD 436
Query: 288 SGIPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EE 333
I +V T+ +L+ + + QDL + + L++ T ++N +E
Sbjct: 437 QAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDE 496
Query: 334 EVSVVKELEDSSVLDEAMKWD 354
+++ +ED+ + +A+ ++
Sbjct: 497 ALALQSRMEDNGCISDAVTFE 517
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 76/170 (44%), Gaps = 5/170 (2%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +ID CK D+ Y ++V S V ++ ++SG C +GQ
Sbjct: 195 RPNVVIYSMIIDRLCKDTL---VDEAYDLYTEMVGKGISPDVVTYSI--LVSGFCIVGQL 249
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+ A +L+ EM ++ + P + Y ++ + G +++ E ++ M +D V + +
Sbjct: 250 NRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTL 309
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315
+ Y NE++ M G+ V Y+ ++N I + + LN
Sbjct: 310 MDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALN 359
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 9/144 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPH 206
V+ Y NLID+ CK+ D A N++ + + +VY ++ GLC++G+
Sbjct: 408 VITYNNLIDALCKNGH---LDRAIALFNKMKDQAIRPNVY----TFTILLDGLCKVGRLK 460
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A +++ KG + Y +I G + GLL++ + ++ME +G D V +++
Sbjct: 461 NALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMI 520
Query: 267 SSYGDHNELSRMVLWLQKMKDSGI 290
++ D +E + +++M G+
Sbjct: 521 RAFFDKDENDKAEKLVREMIARGL 544
>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
Length = 1603
Score = 64.7 bits (156), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G +A+ L +M GL+P Y C+I+ + GLL + +I N M SDG
Sbjct: 1406 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 1465
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V +++ +Y L W +KM + G+ + TYN ++++
Sbjct: 1466 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 1514
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G + +L EM +G+ P+ Y +I+G + GL+E + +M + G
Sbjct: 1196 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 1255
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +L+ Y L +L ++ +G+ +V TYN +++
Sbjct: 1256 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDG 1304
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+DSF K K D L ++ S +I+GL G EA
Sbjct: 1119 IVTYNTLLDSFLKEGRK---DKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEA 1175
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E MR+ + S F Y +I G G ++ + + +ME++G V N ++
Sbjct: 1176 AELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHG 1234
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M+ G+ V TYNS+LN
Sbjct: 1235 LLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 1269
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++G C+ G EA L ++R GL P+ Y +I GY RLG LE+ + +M
Sbjct: 1265 SLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQ 1324
Query: 254 GTRVDTVCSNMVL 266
G + VC+ +L
Sbjct: 1325 GC-LPNVCTYTIL 1336
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC MG+ A + EM +GL + + Y +I G ++G ED R +M +G
Sbjct: 1511 LIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNG 1570
Query: 255 TRVDTVCSNMVLSSYGDH 272
D + +L + H
Sbjct: 1571 IHPDYLTHKALLKGFDGH 1588
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 51/117 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI GL + G A+ EMR GL P Y ++ GY + G L++ + +
Sbjct: 1230 AMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRA 1289
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G + N+++ Y +L + ++M + G +V TY ++ + S+
Sbjct: 1290 GLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVRSL 1346
>gi|341605747|gb|AEK82976.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605749|gb|AEK82977.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605751|gb|AEK82978.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 504
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/211 (27%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L+ ++T S FQ + L +I L K Q A L LS++ S Y
Sbjct: 28 ALELFDKMTR-SGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGN---FFTYG 83
Query: 154 NLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
+IDS CK + +G +N + + VY S+I+GLC +G+ EA NL
Sbjct: 84 LVIDSLCKDGLAIKGLKMFREMINMGICPNVIVY------SSLINGLCRVGKLREAVNLF 137
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+EM +G++ + Y +I+ R GL ++ R +QM +G D V ++
Sbjct: 138 DEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKK 197
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M G ++ TYNS+LN
Sbjct: 198 GKVQEAYKIFELMIKQGEAPNIVTYNSLLNG 228
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y L+D CK+ D + L + S +Y +I G+ + + A
Sbjct: 327 YTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIY------SILIGGMFQARRWESAME 380
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ +E+ GL P+ Y +I G + G L + ER+ QME G D + N ++ +
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFL 440
Query: 271 DHNELSRMVLWLQKMKD 287
N++ + + +L++M++
Sbjct: 441 QENQVQKAMEFLKRMRE 457
>gi|341605745|gb|AEK82975.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRXNGFAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|399107208|gb|AFP20368.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G EA + + R GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGXVEEALDYFQTCRFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
R E L+LE + + G YC+LI++ K ++ + L + SS+
Sbjct: 391 NRVEKALLLLEEMDEKGFPPCPAA--YCSLINALGKAKRYEAANELFLELKENCGRSSA- 447
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ MI L + G+P EA +L EM+ G P + Y ++ G R G++E+
Sbjct: 448 ----RIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFS 503
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ ME +G D N++L+ + KMKDS I +YN++L S S
Sbjct: 504 ALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLS 563
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 50/98 (51%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+A L++EM+ KG P+ F Y +I G G+ G +ED + M DG + D V N +
Sbjct: 253 EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNL 312
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +G L + +M+ +V TYN+V+ +
Sbjct: 313 INIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKA 350
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + G+ +A ++ M G +P +I +G+ G LED ++ +QM S
Sbjct: 277 LIKGLGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLK 336
Query: 255 TRVDTVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----I 307
+ V N V+ + + S W +KMK +G+ S TY+ +++ C T
Sbjct: 337 CAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKA 396
Query: 308 MSMLQDLNSNDFP 320
+ +L++++ FP
Sbjct: 397 LLLLEEMDEKGFP 409
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I G+ E + +++ +
Sbjct: 383 LIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENC 442
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN----------SC 304
R +++ + G S V +MK G V YN++++ +
Sbjct: 443 GRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAF 502
Query: 305 STIMSMLQ-----DLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETK 359
S + +M + DLNS++ L+ L T E+ + +++DS + +A+ +++
Sbjct: 503 SALRTMEENGCTPDLNSHNIILNGLARTG-RPEQATEMFMKMKDSLIKPDAVSYNTILGS 561
Query: 360 LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCG 401
L GM +A + M EM +R H+ + I G
Sbjct: 562 LSRSGMFEEAA-----KLMREMGSRGFEYDHITYSSILEAVG 598
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
E+I L K G+ E+A ++ L L K G + V+ NLI+ F K +D
Sbjct: 276 ELIKGLGKSGRVEDAYSVFLNML-KDGCKPD--VVLINNLINIFGKAGR---LEDALKLF 329
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+Q+ + + V ++I L E P EA + E+M+ G+ PS F Y +I G+
Sbjct: 330 DQMRSLKCAPNV--VTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILIDGF 387
Query: 235 GRLGLLEDMERIVNQMESDG 254
+ +E ++ +M+ G
Sbjct: 388 CKTNRVEKALLLLEEMDEKG 407
>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Brachypodium distachyon]
Length = 597
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 92/204 (45%), Gaps = 24/204 (11%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI FC+ ++ ++ Y L ++ + VY +++SGLC+ G +
Sbjct: 391 YNILIGGFCR---RKRLNEAYELLGEMKEAGLQPDVYT----YNTLLSGLCKAGDFLAVD 443
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ +M G PS + +I+GY ++G +++ RI M+ G + +TV N ++
Sbjct: 444 ELLGKMIDGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFL 503
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEV 329
+ S + +M++ +P +V T+N ++L+ L + P EL ++
Sbjct: 504 CKSRDTSLAIELFDEMREKHVPANVTTFN----------ALLKGLRDKNMPEKAFELMDL 553
Query: 330 LNEEEVSVVKELEDSSVLDEAMKW 353
+ E + D +D M+W
Sbjct: 554 MREGRCT-----PDYVTIDILMEW 572
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EM +G P Y +I G + G L+D + M+ G ++D N+++
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIG 396
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ L +MK++G+ V TYN++L+
Sbjct: 397 GFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSG 432
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y L+ CK D + L+ + S V L +++ GLC+ G+
Sbjct: 169 RPNVVTYGILVKGLCKAGR---VGDALSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRL 225
Query: 206 HEAENLIEE-MR-VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+A +EE MR V G P+ Y C+ + + R G + +V +ME + + V N
Sbjct: 226 QQAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLN 285
Query: 264 MVLSS 268
++
Sbjct: 286 TIVGG 290
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 13/248 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP IA N++ S L AF Y ++ +P + ++ L G+
Sbjct: 263 SPSIIAFNSVIAAYS----QAGLEDKAFEAY-KLMVHFGLTPSPSTCSSLLMGLSINGRL 317
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA LI + + K S + + L+D F K G + + + ++
Sbjct: 318 QEATELIGQMIEKGLSVNN---MAFTVLLDKFFKRGDVVGAQSLWGEMER-----RGIFP 369
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
A + I GL + G EA N+ EM KGL P+ F Y +I G+ + G L + ++
Sbjct: 370 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 429
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
M G D +NM++ + + M +G+ + TYN+++N
Sbjct: 430 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 489
Query: 308 MSMLQDLN 315
M+ N
Sbjct: 490 FDMVNADN 497
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 111 PKLVAEIIAFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
P +VA AF+D KQG EEA + LE L K G Y +LI FCK
Sbjct: 369 PDVVA-FSAFIDGLSKQGLVEEAYNVFLEMLRK-GLIPNNFA--YNSLICGFCK------ 418
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSM------ISGLCEMGQPHEAENLIEEMRVKGLE 221
+LN+ + V R L + I GLC+ G+ A N+ +M GL
Sbjct: 419 ----CGKLNEAL-KLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLS 473
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P Y +I GY + + + + +VN+M + G+ D N+ + + ++R VL
Sbjct: 474 PDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLM 533
Query: 282 LQKMKDSGI 290
L ++ +GI
Sbjct: 534 LDELVSAGI 542
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +I++FCK + + L ++ S +++ ++++G +M + +A
Sbjct: 126 VVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAI-----MYNTLMNGYVKMREIDQA 180
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EEMR KG+ P G + ++ G+ + G ED +R++ + G D ++ +S
Sbjct: 181 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 240
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L + +L M + G+ S+ +NSV+ + S
Sbjct: 241 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYS 277
>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 546
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 66/112 (58%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQME 251
+I+GLC++G+ ++A ++IE+M+V+G+ + Y +I GY G++G + + I+ +M
Sbjct: 169 VINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMR 228
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+DG + V N+++ + +S + +M G+ +V TYNS++N
Sbjct: 229 ADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLING 280
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 7/148 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID FCK + +A +N Q V + Y S+I+GLC G+ +EA L +
Sbjct: 242 LIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTY------NSLINGLCNNGKVNEATALRD 295
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M L+P+ + ++ G+ + +++ + + M G + N+++ +Y
Sbjct: 296 QMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDE 355
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + M G+ V TYN ++
Sbjct: 356 NMEDAFALYRIMLGKGVCPDVSTYNCLI 383
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 155 LIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L++ FCK+ + FDD Q + + + Y +I C+ +A
Sbjct: 312 LLNGFCKNKMVKQAGELFDDMPK---QGITPNVTTY------NILIDAYCKDENMEDAFA 362
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L M KG+ P Y C+I G R G LE +V++M++ + D + N+++ S
Sbjct: 363 LYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLC 422
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ E+ + + L +M G+ S TYN++++
Sbjct: 423 NKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDG 455
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM KGL+PS Y +I GY + G L + +QME G
Sbjct: 417 LIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVG 476
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ N+++ + ++L L +M + G+ + TY V
Sbjct: 477 RLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIV 522
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYA----RLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V Y LID++CK ++ +D +A L + V S Y +I+GLC G
Sbjct: 341 VTTYNILIDAYCKDEN---MEDAFALYRIMLGKGVCPDVSTY------NCLIAGLCRKGD 391
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
A NL+ EM K L+ Y +I G ++ R++++M G + + N
Sbjct: 392 LEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNT 451
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ Y L + +M+ G +V TYN ++
Sbjct: 452 MIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLI 488
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 194 SMISGLCEMGQP---HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I G C+MG+ ++A+ +++EMR G+ P+ + +I G+ + + ++ +M
Sbjct: 203 TLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEM 262
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N +++ ++ +++ +M +S + ++ T+N++LN
Sbjct: 263 NRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNG 315
>gi|341605697|gb|AEK82951.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ ++
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMMLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 19/241 (7%)
Query: 77 LSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW----NPKLVAEIIAF------LDKQGQ 126
LS + P+ H F R+ E + F + N V ++ F L K+G
Sbjct: 338 LSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGL 397
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186
A L+ + +K G + + Y LID FCK K ++ L +++ S+
Sbjct: 398 FGSALELVNDMDAK-GCKPN--LNTYTILIDGFCK---KGQLEEAGLILREMLTKGFSL- 450
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++IS LC+ G+ HEA ++ EM KG +P F + +I+G R+ +ED +
Sbjct: 451 -NTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALAL 509
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
M +G ++V N ++ ++ E+ + + M G P TYN ++ + C
Sbjct: 510 YRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCK 569
Query: 306 T 306
T
Sbjct: 570 T 570
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 134/311 (43%), Gaps = 35/311 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+GQ EEA ++ E L+K S + Y LI + CKH D + + SS
Sbjct: 429 KKGQLEEAGLILREMLTKGFSLN---TVGYNALISALCKHGKIHEALDMFGEM-----SS 480
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S+I GLC + + +A L +M ++G+ + + +I+ + R G +++
Sbjct: 481 KGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQE 540
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++VN M G +D + N ++ + + + + ++M G+ S+ T N ++N
Sbjct: 541 ALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILIN 600
Query: 303 SCST------IMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLD 348
T + ++D+ F I+ ++N +E +++ ++L+ +
Sbjct: 601 GFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQP 660
Query: 349 EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEIT---VVCGSGKH 405
+++ +++ L G A F++ + + E +P ++T +V GK
Sbjct: 661 DSITYNTLICWLCREG-AFDDACFLLYRGV---------ENGFVPNDVTWNILVYNFGKQ 710
Query: 406 STVRGESSVKA 416
S G++ A
Sbjct: 711 SNSEGQTITYA 721
>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
[Oryza sativa Japonica Group]
Length = 571
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK+ + + + Q ++S V S+ISGLC G+ E L+EE
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVV-----TYNSLISGLCSEGKVEEGVKLMEE 324
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M GL P+ + C++ G+ + G++ D ++ M D V N+++ Y +
Sbjct: 325 MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGK 384
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + M GI +V TYN ++ S
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVN 248
++ISGLC +GQ +A ++ ++++ GL PS Y +I GY G G + ++ ++
Sbjct: 194 FNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
+M G V ++++ Y ++ + V ++MK GI SV TYNS+++ CS
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ L +G+ EE L +E + LG E+ F C ++ FCK A N
Sbjct: 305 LISGLCSEGKVEEGVKL-MEEMEDLGLSPNEIT-FGC-VLKGFCKKG-------MMADAN 354
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++ + V+ + +I +G+ +A + E M KG+ P+ Y C+I G+
Sbjct: 355 DWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G ++++M+ G D V N+++ + E+ + V L +M + G+ +
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474
Query: 295 RTYNSVLNS 303
TYN+++
Sbjct: 475 LTYNTIIQG 483
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 194 SMISGLCEMGQP---HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
S+I G C+ G + + L++EM G+ P+ + +I GY + R+ +M
Sbjct: 231 SLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEM 290
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMS 309
+ G V N ++S ++ V +++M+D G+ + T+ VL C
Sbjct: 291 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK--G 348
Query: 310 MLQDLNSNDFPLSILELTEVLNEEEVSV----------VKELEDSSVLDEAM 351
M+ D +ND+ I +TE E +V + + ++ED+ + EAM
Sbjct: 349 MMAD--ANDW---IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM GLEP+ Y II G+ G ++ I +ME
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R + V N+ + + ++ L +M D + + TY ++
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550
>gi|125600921|gb|EAZ40497.1| hypothetical protein OsJ_24952 [Oryza sativa Japonica Group]
Length = 766
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+N S++ Y S++ +G + EN++ E++ G+ P + Y +IY YGR G
Sbjct: 606 INLSAATY------NSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKG 659
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ R+ ++M+ G + D V N+ + SY ++ + ++ M G + RTYN
Sbjct: 660 QMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYN 719
Query: 299 SVL 301
S++
Sbjct: 720 SIV 722
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-F 168
+P+++A I + + G+ EA L L + Y L+ +F S+ G F
Sbjct: 122 HPRVLATAIRVMARAGRLAEASAL-------LDAAPGPDAGAYTALVSAF----SRAGRF 170
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEY 227
D A ++V+S + ++ +M P E L+ M+ G+ P + Y
Sbjct: 171 RDAVAVFRRMVDSGVQPAI--VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTY 228
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I R L ++ ++ ++M++ G D V N +L YG + +Q+M+
Sbjct: 229 NTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER 288
Query: 288 SGIPFSVRTYNSVLNS 303
G P SV TYNS+++S
Sbjct: 289 VGCPPSVVTYNSLISS 304
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L +M+S + + E ++ M+ + S Y +++ Y RLG E E I+ +++
Sbjct: 578 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 637
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S G R D N V+ +YG ++ +MK SG+ V TYN + S
Sbjct: 638 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 689
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQ-GQREEAETLILETLSKLGSRE 145
HPR+ + A + R +AE A LD G A T ++ S+ G R
Sbjct: 122 HPRVLATAIRVMARAGR----------LAEASALLDAAPGPDAGAYTALVSAFSRAG-RF 170
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R+ V + ++DS G N +++ S + V + + +++ + E G
Sbjct: 171 RDAVAVFRRMVDS--------GVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVA 222
Query: 206 -------------------HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
EA + +EM+ G EP + ++ YG+ ++ +
Sbjct: 223 PDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEV 282
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +ME G V N ++SSY L + V Q+M+ G+ V TY ++++
Sbjct: 283 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG 339
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+IS + G +A L +EM VKG++P Y +I G R G ++ ++M +
Sbjct: 300 SLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN 359
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N ++ +G + M+ + + +G + T+N++L
Sbjct: 360 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 407
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +I+EM G PS Y +I Y + GLLE + +ME G + D V ++
Sbjct: 278 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 337
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFP 320
S ++ ++ +M +G ++ TYN+++ +M++ + S F
Sbjct: 338 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFV 397
Query: 321 LSILELTEVLN-------EEEVS-VVKELEDSSVLDE 349
I+ +L + EVS V KE++ + + E
Sbjct: 398 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 434
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGL G+ A +EM G +P+ Y +I +G G +M + ++ S
Sbjct: 335 TLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA 394
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D V N +L+ +G + S + ++MK +G TY S+++S S
Sbjct: 395 GFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 446
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS V R + ++I GQ EA L EM+ GL+P Y + Y + E
Sbjct: 638 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFE 697
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +V M + G + + N ++ Y + +L+ +++ +
Sbjct: 698 EAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 741
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 54/211 (25%)
Query: 152 YCNLIDSFCKHDSKRGFDD----TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y +LI S+ S+ G D Y R+ + + +Y +++S L G+ +
Sbjct: 438 YVSLISSY----SRCGLFDLAMQIYKRMME-----AGIYPDVSTYNAVLSALARGGRWEQ 488
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-------------- 253
AE L EM + +P + Y +++ Y L+ M+ + + + S+
Sbjct: 489 AEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVL 548
Query: 254 -GTRVDTV--------------CS------NMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
++V+ + CS N ++S YG + + ++ L MK+S I
Sbjct: 549 VNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINL 608
Query: 293 SVRTYNSV------LNSCSTIMSMLQDLNSN 317
S TYNS+ L C ++L ++ S+
Sbjct: 609 SAATYNSLMHMYSRLGDCEKCENILTEIKSS 639
>gi|341605707|gb|AEK82956.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L++++B V ++ +++GLC+ G+ EA + + GL
Sbjct: 66 GS---VEDAIRLLHRMIBEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 102/236 (43%), Gaps = 33/236 (13%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
Y+R F+ + II K+G ++A ++ + + K G + E YC+LI+
Sbjct: 282 YLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFK-GFKPDEFT--YCSLIN 338
Query: 158 SFCKH-DSKRG---FDDTYAR--------LNQLVNSSSSVYVKRQALKSM---------- 195
FCK D R F D + N L+ S + AL+ M
Sbjct: 339 GFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLP 398
Query: 196 --------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
I+GLC+MG +A +L+++ KG P F Y +I GY + L+ +V
Sbjct: 399 NIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMV 458
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+M S G D + N +L+ + ++ + M++ G ++ TYN +++S
Sbjct: 459 NRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDS 514
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC+ + +EA +L+ EM+ KGL+P + + G+ ++G ++ ++ +ME
Sbjct: 511 IVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQY 570
Query: 255 TRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
T + N+++S++ + ++ + MK+SG TY V++ + ++ Q
Sbjct: 571 DVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQ 629
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 195 MISGLCEMG---------QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ GLC G + EAE + +M G EP Y II GY + G+++D R
Sbjct: 257 FVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316
Query: 246 IVNQMESDGTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ G + D T CS +++ + + R + + G+ S+ YN+++
Sbjct: 317 VLKDAVFKGFKPDEFTYCS--LINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKG 374
Query: 304 CST---IMSMLQDLN 315
S I+ LQ +N
Sbjct: 375 LSQQGLILPALQLMN 389
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 29/183 (15%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN------SSSSVYVKRQALKSMISGLCEM 202
V Y I SFCK + R YA L L N S++V A ++++GL +
Sbjct: 146 VYTYTIRIKSFCK--TAR----PYAALRLLRNMPELGCDSNAV-----AYCTVVAGLYDS 194
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ A L +EM + L P + +++ + GL+ + ER++ ++ G +
Sbjct: 195 GEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTF 254
Query: 263 NMVLSSYGDHNELSRMVL---------WLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQ 312
N+ + L R V +L+KM + G TYNS+++ C M+Q
Sbjct: 255 NIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKK--GMVQ 312
Query: 313 DLN 315
D N
Sbjct: 313 DAN 315
>gi|341606955|gb|AEK83580.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 206
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
Length = 688
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G +A+ L +M GL+P Y C+I+ + GLL + +I N M SDG
Sbjct: 491 LIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFNNMISDG 550
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V +++ +Y L W +KM + G+ + TYN ++++
Sbjct: 551 LLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHA 599
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G + +L EM +G+ P+ Y +I+G + GL+E + +M + G
Sbjct: 281 LITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMG 340
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
D + N +L+ Y L +L ++ +G+ +V TYN
Sbjct: 341 LLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYN 384
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 66/155 (42%), Gaps = 4/155 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+DSF K K D L ++ S +I+GL G EA
Sbjct: 204 IVTYNTLLDSFLKEGRK---DKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLEEA 260
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E MR+ + S F Y +I G G ++ + + +ME++G V N ++
Sbjct: 261 AELVEGMRLSK-KASSFTYNPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHG 319
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M+ G+ V TYNS+LN
Sbjct: 320 LLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNG 354
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI GL + G A+ EMR GL P Y ++ GY + G L++ + +
Sbjct: 315 AMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRA 374
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV----LNSCSTIMS 309
G + N+ + Y +L + ++M + G +V TY + LN CS M+
Sbjct: 375 GLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMA 434
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC MG+ A + EM +GL + + Y +I G ++G ED R +M +G
Sbjct: 596 LIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVGNWEDAMRFYFEMHQNG 655
Query: 255 TRVDTVCSNMVLSSYGDH 272
D + ++ + H
Sbjct: 656 IHPDYLTHKALVKGFDGH 673
>gi|341606837|gb|AEK83521.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606869|gb|AEK83537.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606977|gb|AEK83591.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606979|gb|AEK83592.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606981|gb|AEK83593.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606983|gb|AEK83594.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606985|gb|AEK83595.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606987|gb|AEK83596.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606989|gb|AEK83597.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606991|gb|AEK83598.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606993|gb|AEK83599.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606995|gb|AEK83600.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606997|gb|AEK83601.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606999|gb|AEK83602.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607001|gb|AEK83603.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607003|gb|AEK83604.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607005|gb|AEK83605.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607007|gb|AEK83606.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607009|gb|AEK83607.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607011|gb|AEK83608.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607013|gb|AEK83609.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341607015|gb|AEK83610.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 207
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
Length = 578
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK+ + + + Q ++S V S+ISGLC G+ E L+EE
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVV-----TYNSLISGLCSEGKVEEGVKLMEE 324
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M GL P+ + C++ G+ + G++ D ++ M D V N+++ Y +
Sbjct: 325 MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGK 384
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + M GI +V TYN ++ S
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVN 248
++ISGLC +GQ +A ++ ++++ GL PS Y +I GY G G + ++ ++
Sbjct: 194 FNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
+M G V ++++ Y ++ + V ++MK GI SV TYNS+++ CS
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ L +G+ EE L +E + LG E+ F C ++ FCK A N
Sbjct: 305 LISGLCSEGKVEEGVKL-MEEMEDLGLSPNEIT-FGC-VLKGFCKKG-------MMADAN 354
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++ + V+ + +I +G+ +A + E M KG+ P+ Y C+I G+
Sbjct: 355 DWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G ++++M+ G D V N+++ + E+ + V L +M + G+ +
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474
Query: 295 RTYNSVLNS 303
TYN+++
Sbjct: 475 LTYNTIIQG 483
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 194 SMISGLCEMGQP---HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
S+I G C+ G + + L++EM G+ P+ + +I GY + R+ +M
Sbjct: 231 SLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEM 290
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMS 309
+ G V N ++S ++ V +++M+D G+ + T+ VL C
Sbjct: 291 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK--G 348
Query: 310 MLQDLNSNDFPLSILELTEVLNEEEVSV----------VKELEDSSVLDEAM 351
M+ D +ND+ I +TE E +V + + ++ED+ + EAM
Sbjct: 349 MMAD--ANDW---IDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAM 395
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM GLEP+ Y II G+ G ++ I +ME
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R + V N+ + + ++ L +M D + + TY ++
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550
>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 566
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 17/209 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLG--SRERELV 149
+F L + +TE F ++P +V +I K+G+ E+A+ L E + KLG + ER
Sbjct: 182 SFDLLIELTE---FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKLGLVANERT-- 235
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI+ K+ K+ + Y ++ + V+ +++ LC+ G+ +A
Sbjct: 236 --YTVLINGLFKNGVKKQGFEMYEKMQE-----DGVFPNLYTYNCVMNQLCKDGRTKDAF 288
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ +EMR +G+ + Y +I G R L + ++V+QM+SDG + + N ++ +
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGF 348
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+L + + + +K G+ S+ TYN
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTYN 377
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSREREL--- 148
F +Y ++ E+ F P L ++ L K G+ ++A + E RER +
Sbjct: 252 GFEMYEKMQEDGVF---PNLYTYNCVMNQLCKDGRTKDAFQVFDEM------RERGVSCN 302
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LI C+ + ++ ++Q+ S + ++I G C +G+ +A
Sbjct: 303 IVTYNTLIGGLCR---EMKLNEANKVVDQM--KSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L +++ +GL PS Y ++ G+ R G ++V +ME G + V +++ +
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + + + M++ G+ V TY+ +++
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
>gi|399107214|gb|AFP20371.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L++++B V ++ +++GLC+ G+ EA + + GL
Sbjct: 68 GS---VEDAIRLLHRMIBEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ +FCK DD Y Q+V + S V S++ GLC G+ +A
Sbjct: 281 VVTYTTLMSAFCKMGR---LDDAYELFQQMVANKLSPDVV--TFTSLVDGLCGEGRMEDA 335
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EE+ +G P+ + Y C++ GY + + E +V S G +TV N++++
Sbjct: 336 LELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAG 395
Query: 269 YGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSVLNS 303
+ + +L ++ G P SV Y +L++
Sbjct: 396 CCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 432
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC+ + EA L+E M +G P+ Y II G+ R +++ + QM ++
Sbjct: 114 ALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAE 173
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + ++ + ++ R + L ++ G + TY++V++
Sbjct: 174 GCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDG 223
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 8/155 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +ID CK R D + ++ ++ Y S+I G C G EA
Sbjct: 214 IVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITY------NSLIGGYCRAGDMDEA 265
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ +M P Y ++ + ++G L+D + QM ++ D V ++
Sbjct: 266 IRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDG 325
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L+++ G P ++ TYN V++
Sbjct: 326 LCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 360
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 89/220 (40%), Gaps = 19/220 (8%)
Query: 109 WNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P +V + +I L K G+ +A I E +S + + Y +LI +C+
Sbjct: 210 FTPDIVTYSTVIDGLCKAGRLRDAVD-IFEEMSCAPT-----AITYNSLIGGYCRAGD-- 261
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ L ++V+ + V +++S C+MG+ +A L ++M L P
Sbjct: 262 -MDEAIRLLGKMVDDKCAPDVV--TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 318
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G G +ED ++ ++ G N V+ Y N++ + + +
Sbjct: 319 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFR 378
Query: 287 DSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFP 320
G + TYN ++ C + L LNS P
Sbjct: 379 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP 418
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G+ ++A L+ L+ G V Y ++D+ C+ D + DD
Sbjct: 392 LVAGCCRAGRTDQA-LQYLDQLNSEGGPCPTSVAMYAIILDALCR-DGRT--DDAVQFYE 447
Query: 177 QLVNSSSSVYVKRQA-LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ YV A +++ LC+ QP +A L+EEM G P ++ Y
Sbjct: 448 EMIQRG---YVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYC 504
Query: 236 RLGLLEDMERIVNQM 250
R G+++ + + +++
Sbjct: 505 RAGMIQKADELASEL 519
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSK 165
F+ N II K+G +A ++ + + K G + E YC+L++ FC+ D
Sbjct: 396 FEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK-GFKPDEFT--YCSLVNGFCQDGDPD 452
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ L + + S VY ++I GLC+ G A L+ EM KG +P +
Sbjct: 453 QAMAVFKDGLGKGLRPSIIVY------NTLIKGLCQQGLILPALQLMNEMAEKGCKPDIW 506
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y II G ++G L D ++ + G D N ++ Y +L + + +M
Sbjct: 507 TYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRM 566
Query: 286 KDSGIPFSVRTYNSVLNS-CSTIMS 309
G+ V TYN++LN C T S
Sbjct: 567 WSQGMTPDVITYNTLLNGLCKTAKS 591
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 7/127 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC + EAE + +M G EP+ F Y II GY + G++ D RI+
Sbjct: 370 TVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFK 429
Query: 254 GTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C--STIM 308
G + D T CS +++ + + + + + G+ S+ YN+++ C I+
Sbjct: 430 GFKPDEFTYCS--LVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLIL 487
Query: 309 SMLQDLN 315
LQ +N
Sbjct: 488 PALQLMN 494
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++ LC+ G E+E L +++ +G+ P+ F + I G + G L+ R++ +
Sbjct: 297 TFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCV 356
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G R D V N V+ + + L KM + G + TYNS+++
Sbjct: 357 SREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDG 409
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC + +EA +L+ EM+ KGL P + +I G+ ++G L+ + ME
Sbjct: 615 TIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQ 674
Query: 254 GTRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
T + N+++S++ + + + +MK +G TY +++ C T
Sbjct: 675 YDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKT 729
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 1/122 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C+ G +A ++++ KG +P F Y ++ G+ + G + +
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK 464
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G R + N ++ + + + +M + G + TYN ++N M L D
Sbjct: 465 GLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCK-MGCLSD 523
Query: 314 LN 315
N
Sbjct: 524 AN 525
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +G+ EEA +L+ E S SR V+ Y LID FCK+ ++ + +
Sbjct: 462 LIDSLCSRGRLEEALSLLKEMESSGCSRN---VVTYNTLIDGFCKNKRIEEAEEIFDEM- 517
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+L S +V ++I GLC+ + EA L+++M ++GL+P F Y ++ + R
Sbjct: 518 ELQGISRNVV----TYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ IV M S+G D+V ++ + L+ ++ G+ + +T
Sbjct: 574 AGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQT 633
Query: 297 YNSVLNS 303
YN V+ +
Sbjct: 634 YNPVIKA 640
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R S+++GLC +G A +++ M +G +P F Y +I+G +LG +E+ I+N
Sbjct: 316 RFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILN 375
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
QM +TV N ++S+ N++ + + GI V T+NS++
Sbjct: 376 QMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLI 428
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I L K G+ EEA +E L+++ R+ + Y LI + CK + + AR
Sbjct: 357 LIFGLCKLGEVEEA----VEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATE-LAR- 410
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
V +S + S+I GLC A L EEM+ KG P F Y +I
Sbjct: 411 ---VLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLC 467
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G LE+ ++ +MES G + V N ++ + + + +M+ GI +V
Sbjct: 468 SRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVV 527
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 528 TYNTLIDG 535
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 60/142 (42%), Gaps = 3/142 (2%)
Query: 169 DDTYARLNQLVNS---SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D +L ++VNS S + +I LC Q A ++EEM GL P
Sbjct: 188 DGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEK 247
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ ++ G+ G + RI QM + G V N+++ Y + ++ ++ +M
Sbjct: 248 TFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEM 307
Query: 286 KDSGIPFSVRTYNSVLNSCSTI 307
+ G T+NS++N I
Sbjct: 308 SNEGFRPDRFTFNSLVNGLCRI 329
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/209 (17%), Positives = 87/209 (41%), Gaps = 19/209 (9%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+ +++ G E G + A + E+M G S +++GY + G +E++ +++
Sbjct: 247 KTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDE 306
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV------LNS 303
M ++G R D N +++ + + L M G + TYNS+ L
Sbjct: 307 MSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366
Query: 304 CSTIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
+ +L + DF + + +++ EE + + L +L + ++S
Sbjct: 367 VEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426
Query: 356 GETKLDLHGMHLGSAYFIILQWMDEMRNR 384
+ G+ L + + + ++ +EM+ +
Sbjct: 427 L-----IQGLCLTNNHRLAMELFEEMKTK 450
>gi|357115308|ref|XP_003559432.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Brachypodium distachyon]
Length = 570
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 85/189 (44%), Gaps = 15/189 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LI+++C ++ F YA LN++ + V + ++ L + G+ EA
Sbjct: 299 VITYTSLIEAYCM---EKDFQTVYAILNEMCSKGCRPNVITYTI--VMHALGKAGRTQEA 353
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ ++++ G P Y IIY GR G LED + ++M G N ++S+
Sbjct: 354 LDVFDKVKRDGCVPDASFYNSIIYILGRAGRLEDANSVFDEMCRTGIPPTVAIFNTMISA 413
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST----------IMSMLQDLNSND 318
DH++ + L KM++ ++TY +L C I M + S D
Sbjct: 414 ACDHSQAENALKILVKMEEQSCKPDIKTYTPLLKLCCKRQWMKILPFLICHMFRKDISPD 473
Query: 319 FPLSILELT 327
F IL +T
Sbjct: 474 FSTYILLVT 482
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 62/147 (42%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L +V S + +++ G C+ +EA + ++E
Sbjct: 236 LLDTLCKEKSVKRARGVFQELRGVVPPDESSF------NTLVHGWCQARMLNEARDTMKE 289
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G PS Y +I Y + + I+N+M S G R + + +V+ + G
Sbjct: 290 MEEHGFSPSVITYTSLIEAYCMEKDFQTVYAILNEMCSKGCRPNVITYTIVMHALGKAGR 349
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K+K G YNS++
Sbjct: 350 TQEALDVFDKVKRDGCVPDASFYNSII 376
>gi|399107198|gb|AFP20363.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V Y +ID +CK D + + L Q + +S VY ++I C G E
Sbjct: 663 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVY------NTLIRAYCRNGNTVE 716
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L ++MR KG+ P+ Y +I+G +G +ED + ++++M +G + VC ++
Sbjct: 717 AFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIG 776
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y ++ ++V LQ+M I + TY +++ S
Sbjct: 777 GYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 814
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 123 KQGQREEAETLILETLSK---LGSR-ERELVLFYC---NLIDSFCKHDSKRGFDDTYARL 175
K + EE E L E L++ L S L+ YC N +++F HD R
Sbjct: 675 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR--------- 725
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ + +++ Y S+I G+C +G+ +A+ LI+EMR +GL P+ Y +I GY
Sbjct: 726 SKGIPPTTATY------SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 779
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+LG ++ + ++ +M S + + +++ Y ++ L +M GI
Sbjct: 780 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 839
Query: 296 TYNSVLNS 303
TYN + N
Sbjct: 840 TYNVLTNG 847
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 17/221 (7%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL--- 150
A L+ R+ E+ F N +I L K G +EA L+ + L ER VL
Sbjct: 542 AVELWFRLLEKG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKML------ERGFVLDKI 594
Query: 151 FYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI CK + GF + Q + + Y +I G+C +G+ EA
Sbjct: 595 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY------NLLIHGMCRIGKLDEAV 648
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
NL E + + L P+ + Y +I GY + +E+ E++ ++ + +++V N ++ +Y
Sbjct: 649 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 708
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ M+ GIP + TY+S+++ I M
Sbjct: 709 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 749
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172
L + I K G+ E+A L + + KLG V+ Y NLI CKH + D+ +
Sbjct: 315 LFSTAINAFCKGGKVEDAIQLFFD-MEKLGVSPN--VVTYNNLIHGLCKHGN---LDEAF 368
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++V + + ++ +I+GL ++ + +EA ++++E KG P+ Y +I
Sbjct: 369 RFKEKMVKDGVNATLITYSV--LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLID 426
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY ++G L D RI M S G ++V N ++ + ++ + L++M G
Sbjct: 427 GYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSI 486
Query: 293 SVRTYNSVLN 302
+ + ++++
Sbjct: 487 NPGAFTTIIH 496
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 43/223 (19%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K + EA +++ ETL K G E+V Y LID +CK + D
Sbjct: 389 LINGLMKLEKFNEANSVLKETLEK-GFTPNEVV--YNTLIDGYCKMGN---LGDALRIRG 442
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S + L S+I G C++GQ +AE ++EEM +G + + II+
Sbjct: 443 DMV--SKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCM 500
Query: 237 LGLLEDMERIVNQM------ESDG---TRVDTVC---------------------SNMVL 266
E R + +M +DG T V +C +N+V
Sbjct: 501 NSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVT 560
Query: 267 SSYGDHN-----ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ H + V L+KM + G TYN++++ C
Sbjct: 561 TNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGC 603
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI +C GF + L N V+ + ++S L + + ++ + E
Sbjct: 247 LIHVYCTQFRNVGFRNAIGVFRFLANKG--VFPTVKTCTFLLSSLVKANELEKSYWVFET 304
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
MR +G+ P + + I + + G +ED ++ ME G + V N ++ H
Sbjct: 305 MR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 363
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +KM G+ ++ TY+ ++N
Sbjct: 364 LDEAFRFKEKMVKDGVNATLITYSVLING 392
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 34/260 (13%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK + + +L S + V ++I GLC+ G EA
Sbjct: 313 VYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV-----TYNNLIHGLCKHGNLDEA 367
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M G+ + Y +I G +L + ++ + G + V N ++
Sbjct: 368 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 427
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
Y L + M GI + T NS++ I M E E
Sbjct: 428 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM--------------EQAE 473
Query: 329 VLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEM--RNRFN 386
+ EE +L + G +H + + S + L+++ EM RN
Sbjct: 474 CILEE------------MLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 521
Query: 387 NEKHVIPAEITVVCGSGKHS 406
N+ ++ + +C GKHS
Sbjct: 522 NDG-LLTTLVGGLCKEGKHS 540
>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 822
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 56/112 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S +S LC+ G+ EA + M KG +P Y +++GY G + DM + N ME +
Sbjct: 337 SYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGN 396
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D N+++ +YG + +L +M++ G+ TY +V+ + S
Sbjct: 397 GIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS 448
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G EA + +M+ +G+ P + Y +I + R+G L D NQM + G
Sbjct: 408 LIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMG 467
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNS 303
+ DT+ N ++ + H L + + +M GIP + +NS++NS
Sbjct: 468 LKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINS 517
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 13/190 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA + G+ +A + ++ +G + +V Y +LI FC H + +
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIA-MGLKPDTIV--YNSLIQGFCMHGN-------LVKAK 492
Query: 177 QLVNSSSSVYVKRQA---LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+L++ S + R S+I+ LC+ G+ EA+++ + + G P + +I G
Sbjct: 493 ELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDG 552
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
YG +G +E +++ M S G D V + +L Y + + ++ ++M G+ +
Sbjct: 553 YGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPT 612
Query: 294 VRTYNSVLNS 303
TY +L+
Sbjct: 613 TITYGIILHG 622
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/273 (19%), Positives = 110/273 (40%), Gaps = 33/273 (12%)
Query: 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSS 92
RL +F +A+ + D+ + LI F A +S ++S P
Sbjct: 451 GRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRP---- 506
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
N II L K+G+ EA+ I + + +G ER V+ +
Sbjct: 507 -----------------NTVFFNSIINSLCKEGRVVEAQD-IFDLVIHIG--ERPDVITF 546
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAEN 210
+LID + G + ++++ SV ++ + +++ G C G+ +
Sbjct: 547 NSLIDGY-------GLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLI 599
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM KG++P+ Y I++G G +++ ++M GT +D ++L
Sbjct: 600 LFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLC 659
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+N + +K+ + F++ N+++++
Sbjct: 660 RNNCDDEAIALFKKLGAMNVKFNIAIINTMIDA 692
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 3/126 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S I LC+ +AE ++ +M G EP Y C+I+GY LG ++ + +M
Sbjct: 267 SYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRR 326
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST---IMSM 310
G D N +SS H + + M G + TY+ +L+ + ++ M
Sbjct: 327 GLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDM 386
Query: 311 LQDLNS 316
L NS
Sbjct: 387 LNLFNS 392
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%)
Query: 150 LFYCN-LIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
+F CN + S CKH ++ FD A+ ++ + SV ++ G G
Sbjct: 332 IFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSV---------LLHGYAAEGY 382
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+ NL M G+ Y +I YG+ G++++ I QM+ G D
Sbjct: 383 VVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGT 442
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V++++ L+ + +M G+ YNS++
Sbjct: 443 VIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLI 479
>gi|125559009|gb|EAZ04545.1| hypothetical protein OsI_26694 [Oryza sativa Indica Group]
Length = 784
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+N S++ Y S++ +G + EN++ E++ G+ P + Y +IY YGR G
Sbjct: 624 INLSAATY------NSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKG 677
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ R+ ++M+ G + D V N+ + SY ++ + ++ M G + RTYN
Sbjct: 678 QMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYN 737
Query: 299 SVL 301
S++
Sbjct: 738 SIV 740
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P+++A I + + G+ EA L L + Y L+ +F + F
Sbjct: 140 HPRVLATAIRVMARAGRLAEASAL-------LDAAPGPDAGAYTALVSAFSRAGR---FR 189
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEYK 228
D A ++V+S + ++ +M P E L+ M+ G+ P + Y
Sbjct: 190 DAVAVFRRMVDSGVQPAI--VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I R L ++ ++ ++M++ G D V N +L YG + +Q+M+
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 307
Query: 289 GIPFSVRTYNSVLNS 303
G P SV TYNS+++S
Sbjct: 308 GCPPSVVTYNSLISS 322
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L +M+S + + E ++ M+ + S Y +++ Y RLG E E I+ +++
Sbjct: 596 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 655
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S G R D N V+ +YG ++ +MK SG+ V TYN + S
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQ-GQREEAETLILETLSKLGSRE 145
HPR+ + A + R +AE A LD G A T ++ S+ G R
Sbjct: 140 HPRVLATAIRVMARAGR----------LAEASALLDAAPGPDAGAYTALVSAFSRAG-RF 188
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R+ V + ++DS G N +++ S + V + + +++ + E G
Sbjct: 189 RDAVAVFRRMVDS--------GVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVA 240
Query: 206 -------------------HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
EA + +EM+ G EP + ++ YG+ ++ +
Sbjct: 241 PDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEV 300
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +ME G V N ++SSY L + V Q+M+ GI V TY ++++
Sbjct: 301 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISG 357
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 70/157 (44%), Gaps = 14/157 (8%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +I+EM G PS Y +I Y + GLLE + +ME G + D V ++
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLI 355
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFP 320
S ++ ++ +M +G ++ TYN+++ +M++ +L S F
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFV 415
Query: 321 LSILELTEVLN-------EEEVS-VVKELEDSSVLDE 349
I+ +L + EVS V KE++ + + E
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+IS + G +A L +EM VKG++P Y +I G R G ++ ++M +
Sbjct: 318 SLISSYVKDGLLEQAVALKQEMEVKGIKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN 377
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N ++ +G + M+ +++ +G + T+N++L
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSAGFVPDIVTWNTLL 425
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGL G+ A +EM G +P+ Y +I +G G +M + +++ S
Sbjct: 353 TLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDELRSA 412
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D V N +L+ +G + S + ++MK +G TY S+++S S
Sbjct: 413 GFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS V R + ++I GQ EA L EM+ GL+P Y + Y + E
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFE 715
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +V M + G + + N ++ Y + +L+ +++ +
Sbjct: 716 EAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 54/211 (25%)
Query: 152 YCNLIDSFCKHDSKRGFDD----TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y +LI S+ S+ G D Y R+ + + +Y +++S L G+ +
Sbjct: 456 YVSLISSY----SRCGLFDLAMQIYKRMME-----AGIYPDVSTYNAVLSALARGGRWEQ 506
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-------------- 253
AE L EM + +P + Y +++ Y L+ M+ + + + S+
Sbjct: 507 AEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVL 566
Query: 254 -GTRVDTV--------------CS------NMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
++V+ + CS N ++S YG + + ++ L MK+S I
Sbjct: 567 VNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINL 626
Query: 293 SVRTYNSV------LNSCSTIMSMLQDLNSN 317
S TYNS+ L C ++L ++ S+
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKSS 657
>gi|341606831|gb|AEK83518.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606833|gb|AEK83519.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606835|gb|AEK83520.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606839|gb|AEK83522.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606841|gb|AEK83523.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606843|gb|AEK83524.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606845|gb|AEK83525.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606847|gb|AEK83526.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606849|gb|AEK83527.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606851|gb|AEK83528.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606853|gb|AEK83529.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606855|gb|AEK83530.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606857|gb|AEK83531.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606859|gb|AEK83532.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606861|gb|AEK83533.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606863|gb|AEK83534.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606865|gb|AEK83535.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606867|gb|AEK83536.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606871|gb|AEK83538.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606873|gb|AEK83539.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606875|gb|AEK83540.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606877|gb|AEK83541.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606879|gb|AEK83542.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606881|gb|AEK83543.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606883|gb|AEK83544.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606885|gb|AEK83545.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606887|gb|AEK83546.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606889|gb|AEK83547.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606891|gb|AEK83548.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606893|gb|AEK83549.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606895|gb|AEK83550.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606897|gb|AEK83551.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606899|gb|AEK83552.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606901|gb|AEK83553.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606903|gb|AEK83554.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606905|gb|AEK83555.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606907|gb|AEK83556.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606909|gb|AEK83557.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606911|gb|AEK83558.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606913|gb|AEK83559.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606915|gb|AEK83560.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606917|gb|AEK83561.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606919|gb|AEK83562.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606921|gb|AEK83563.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606923|gb|AEK83564.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606925|gb|AEK83565.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606927|gb|AEK83566.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606929|gb|AEK83567.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606931|gb|AEK83568.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606933|gb|AEK83569.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606935|gb|AEK83570.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606937|gb|AEK83571.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606939|gb|AEK83572.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606941|gb|AEK83573.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606943|gb|AEK83574.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606945|gb|AEK83575.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606947|gb|AEK83576.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606949|gb|AEK83577.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606951|gb|AEK83578.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606953|gb|AEK83579.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606957|gb|AEK83581.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606959|gb|AEK83582.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606961|gb|AEK83583.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606963|gb|AEK83584.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606965|gb|AEK83585.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606967|gb|AEK83586.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606969|gb|AEK83587.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606971|gb|AEK83588.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606973|gb|AEK83589.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
gi|341606975|gb|AEK83590.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|302785283|ref|XP_002974413.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
gi|300158011|gb|EFJ24635.1| hypothetical protein SELMODRAFT_174049 [Selaginella moellendorffii]
Length = 447
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC+ GQPHEA L+ EM KG P+ Y +I G+ +L L+++ ++ +M G
Sbjct: 105 LVDALCKSGQPHEAYGLVTEMVKKGCSPNVVTYNALIDGFRKLERLDEVLMLLKEMSQRG 164
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
R D + M+L + +N + L ++ +V TYNS+ + ST
Sbjct: 165 CRADVITYTMILDIFCKNNSIDEAYRLLNALEKR----NVVTYNSLFTALST 212
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 62/306 (20%), Positives = 128/306 (41%), Gaps = 55/306 (17%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLD--KQGQREEAETLILETLSKLGSRERELVLFYCNL 155
Y +TE +P +V A +D ++ +R + ++L+ +S+ G R V+ Y +
Sbjct: 119 YGLVTEMVKKGCSPNVVT-YNALIDGFRKLERLDEVLMLLKEMSQRGCRAD--VITYTMI 175
Query: 156 IDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVK---------RQAL---------- 192
+D FCK++S D+ Y LN L V + +S++ +AL
Sbjct: 176 LDIFCKNNS---IDEAYRLLNALEKRNVVTYNSLFTALSTAEGDRTTEALSLLEKMIQEG 232
Query: 193 --------KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
++++ LC+ + EA ++ M +G + YK ++ + G D
Sbjct: 233 TRPNQVNYRTVLLMLCKNSRLDEAYQVLLSMYSQGCKTDDVSYKILVVAFASAGRTYDSL 292
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
++ +M G +DT N+V+ + +L + M G IP +V TYN+++ +
Sbjct: 293 ELLGRMLGSGYILDTKTMNVVIHKFCKAGDLHEAHQLFKSMCQRGSIPSNV-TYNTLIGA 351
Query: 304 -C-----STIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDE 349
C T + +L + DF +++ ++ EE + + + DS +
Sbjct: 352 FCKAQQPDTAVKLLHQMIQADFKPNVITYNSIIKSFCREQREEEARGIFQMMVDSGCFPD 411
Query: 350 AMKWDS 355
+ + +
Sbjct: 412 RVSYTT 417
>gi|260780352|gb|ACX50722.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 93/196 (47%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGFAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G
Sbjct: 23 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 82
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V ++V++ + + + + Q + +G + Y+S+++
Sbjct: 83 FKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDG 131
>gi|115473111|ref|NP_001060154.1| Os07g0590600 [Oryza sativa Japonica Group]
gi|34393454|dbj|BAC82993.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113611690|dbj|BAF22068.1| Os07g0590600 [Oryza sativa Japonica Group]
Length = 784
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+N S++ Y S++ +G + EN++ E++ G+ P + Y +IY YGR G
Sbjct: 624 INLSAATY------NSLMHMYSRLGDCEKCENILTEIKSSGVRPDRYSYNTVIYAYGRKG 677
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ R+ ++M+ G + D V N+ + SY ++ + ++ M G + RTYN
Sbjct: 678 QMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFEEAIELVRYMVTQGCKPNERTYN 737
Query: 299 SVL 301
S++
Sbjct: 738 SIV 740
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P+++A I + + G+ EA L L + Y L+ +F + F
Sbjct: 140 HPRVLATAIRVMARAGRLAEASAL-------LDAAPGPDAGAYTALVSAFSRAGR---FR 189
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEYK 228
D A ++V+S + ++ +M P E L+ M+ G+ P + Y
Sbjct: 190 DAVAVFRRMVDSGVQPAI--VTYNVVLHVYSKMAVPWKEVVELVASMKEHGVAPDRYTYN 247
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I R L ++ ++ ++M++ G D V N +L YG + +Q+M+
Sbjct: 248 TLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMERV 307
Query: 289 GIPFSVRTYNSVLNS 303
G P SV TYNS+++S
Sbjct: 308 GCPPSVVTYNSLISS 322
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L +M+S + + E ++ M+ + S Y +++ Y RLG E E I+ +++
Sbjct: 596 LNAMVSIYGKNRMVRKVEKILSLMKESAINLSAATYNSLMHMYSRLGDCEKCENILTEIK 655
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S G R D N V+ +YG ++ +MK SG+ V TYN + S
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKS 707
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 94/237 (39%), Gaps = 39/237 (16%)
Query: 87 HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQ-GQREEAETLILETLSKLGSRE 145
HPR+ + A + R +AE A LD G A T ++ S+ G R
Sbjct: 140 HPRVLATAIRVMARAGR----------LAEASALLDAAPGPDAGAYTALVSAFSRAG-RF 188
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R+ V + ++DS G N +++ S + V + + +++ + E G
Sbjct: 189 RDAVAVFRRMVDS--------GVQPAIVTYNVVLHVYSKMAVPWKEVVELVASMKEHGVA 240
Query: 206 -------------------HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
EA + +EM+ G EP + ++ YG+ ++ +
Sbjct: 241 PDRYTYNTLISCCRRRALYKEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEV 300
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +ME G V N ++SSY L + V Q+M+ G+ V TY ++++
Sbjct: 301 IQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISG 357
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+IS + G +A L +EM VKG++P Y +I G R G ++ ++M +
Sbjct: 318 SLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLISGLDRAGKIDAAIVEYDEMVRN 377
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N ++ +G + M+ + + +G + T+N++L
Sbjct: 378 GCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFVPDIVTWNTLL 425
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 14/157 (8%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +I+EM G PS Y +I Y + GLLE + +ME G + D V ++
Sbjct: 296 EAIEVIQEMERVGCPPSVVTYNSLISSYVKDGLLEQAVALKQEMEVKGMKPDVVTYTTLI 355
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFP 320
S ++ ++ +M +G ++ TYN+++ +M++ + S F
Sbjct: 356 SGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSAGFV 415
Query: 321 LSILELTEVLN-------EEEVS-VVKELEDSSVLDE 349
I+ +L + EVS V KE++ + + E
Sbjct: 416 PDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPE 452
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGL G+ A +EM G +P+ Y +I +G G +M + ++ S
Sbjct: 353 TLISGLDRAGKIDAAIVEYDEMVRNGCKPNLCTYNALIKMHGVRGKFPEMMAVFDEFRSA 412
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D V N +L+ +G + S + ++MK +G TY S+++S S
Sbjct: 413 GFVPDIVTWNTLLAVFGQNGLDSEVSGVFKEMKKAGYIPERDTYVSLISSYS 464
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 45/104 (43%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS V R + ++I GQ EA L EM+ GL+P Y + Y + E
Sbjct: 656 SSGVRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGLKPDVVTYNIFVKSYVSNSMFE 715
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +V M + G + + N ++ Y + +L+ +++ +
Sbjct: 716 EAIELVRYMVTQGCKPNERTYNSIVEGYCRNGKLTDAKIFVSNL 759
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 86/211 (40%), Gaps = 54/211 (25%)
Query: 152 YCNLIDSFCKHDSKRGFDD----TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y +LI S+ S+ G D Y R+ + + +Y +++S L G+ +
Sbjct: 456 YVSLISSY----SRCGLFDLAMQIYKRMME-----AGIYPDVSTYNAVLSALARGGRWEQ 506
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-------------- 253
AE L EM + +P + Y +++ Y L+ M+ + + + S+
Sbjct: 507 AEKLFAEMEERDCKPDEYSYSSLLHAYANAKRLDKMKALSDDIYSERIEPHNWLVKTLVL 566
Query: 254 -GTRVDTV--------------CS------NMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
++V+ + CS N ++S YG + + ++ L MK+S I
Sbjct: 567 VNSKVNNLAEAEKAFLELRQKRCSLDINVLNAMVSIYGKNRMVRKVEKILSLMKESAINL 626
Query: 293 SVRTYNSV------LNSCSTIMSMLQDLNSN 317
S TYNS+ L C ++L ++ S+
Sbjct: 627 SAATYNSLMHMYSRLGDCEKCENILTEIKSS 657
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVN-SSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI++ K ++ + L + SS+ VY MI L + G+ EA +
Sbjct: 444 YCSLINALGKAKRYEAANELFQELRENCGYSSARVYA------VMIKHLGKCGRLSEAVD 497
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM+ G P + Y ++ G R+G+ ++ ++ ME +G D N++L+ +
Sbjct: 498 LFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFA 557
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ +MK+S I V +YN+VL S +++++NS F ++
Sbjct: 558 RTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLI 617
Query: 325 ELTEVL 330
+ +L
Sbjct: 618 TYSSIL 623
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 8/205 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + E A L E G + Y +I K
Sbjct: 433 DEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV---YAVMIKHLGKC 489
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D + + +L + VY A +++SG+ +G EA +L+ M G P
Sbjct: 490 GRLSEAVDLFNEMKKL-GCNPDVY----AYNALMSGMVRVGMTDEAHSLLRTMEENGCTP 544
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ I+ G+ R G + + +M++ + D V N VL +
Sbjct: 545 DLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLM 604
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTI 307
++M G + + TY+S+L + I
Sbjct: 605 KEMNSKGFEYDLITYSSILEAVGKI 629
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%)
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
++G+ +A L++EM+ KG + + Y +I G G+ G +E+ I M +G + D V
Sbjct: 277 KLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVV 336
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++ G L+ + ++M+ +V TYN+V+ +
Sbjct: 337 LINNLINLLGKAGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G+ + G+ EA ++ M +G +P +I G+ G L D ++ +MES
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365
Query: 255 TRVDTVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----I 307
+ V N V+ + + S LW +KMK++G+ S TY+ +++ C T
Sbjct: 366 CTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKA 425
Query: 308 MSMLQDLNSNDF---PLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
+ +L++++ F P + L L + K E ++ L + ++ + G + ++
Sbjct: 426 LLLLEEMDEKGFAPCPAAYCSLINALGK-----AKRYEAANELFQELRENCGYSSARVYA 480
Query: 365 M---HLG 368
+ HLG
Sbjct: 481 VMIKHLG 487
>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
Length = 721
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+Y +I GLC+ G +A+ L +M GL+P Y C+I+ + GLL +
Sbjct: 513 GIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREA 572
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++N M SDG + V +++ + L W +KM D GI + TYN ++++
Sbjct: 573 RKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHA 632
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L E M +KG+ P Y II G + G L+D +R+ +M SDG + D + ++
Sbjct: 502 AFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIH 561
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ + L L M G+ SV TY ++++C
Sbjct: 562 AHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTC 598
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 64/159 (40%), Gaps = 4/159 (2%)
Query: 144 RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203
R ++ Y L+DSF K K D+ L ++ + +IS L G
Sbjct: 232 RVEPTIVTYNTLLDSFLKEGRK---DEASMLLKEMETQGGGFSLNDVTFNVVISFLAREG 288
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
A L++ MR+ + S F Y +I G + E + +ME++G V N
Sbjct: 289 HLENAVKLVDSMRLSK-KASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYN 347
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ + + +M+ G+ V TYNS+LN
Sbjct: 348 AIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLN 386
>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
Length = 719
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 85/188 (45%), Gaps = 12/188 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y +I+ CK++ + Y N L + + R +MI GLCEMG EA
Sbjct: 298 IYTYQEIINGLCKNEECL---EAYRVFNDLKDRGYAP--DRVMYTTMIHGLCEMGSFGEA 352
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EM KG++P+ + Y +++G + G E + N+M + G TV N ++S
Sbjct: 353 RKLWFEMMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISE 412
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFPLS 322
+ +KM ++GI TYNS++ M++L +L + D P
Sbjct: 413 LCSRGKSDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQD-PQP 471
Query: 323 ILELTEVL 330
+ L E+L
Sbjct: 472 SVSLYELL 479
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 90/189 (47%), Gaps = 14/189 (7%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+II+ L +G+ +EA + + +S+ G + + Y +LI FCK D+ L
Sbjct: 408 KIISELCSRGKSDEAFE-VFKKMSETGIQADAIT--YNSLIRGFCKEGK---VDERMNLL 461
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N+LV V L +I C+ G A+ L+ +M KGL P+ + Y +++G
Sbjct: 462 NELVAQDPQPSVSLYEL--LIIKSCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSL 519
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLS---SYGDHNELSRMVLWLQKMKDSGIPF 292
+ G E + + N+ + G T N ++S S G +E S M +KM ++GI
Sbjct: 520 KSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKSDEASEM---FKKMSETGIKA 576
Query: 293 SVRTYNSVL 301
TYNS++
Sbjct: 577 DAITYNSLI 585
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 20/205 (9%)
Query: 53 DSKAASRLISKFVASS--PQFIALNALSH--LLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
D +AA RL+ + P + + H L S D H R LY + +
Sbjct: 488 DFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVR------ELYNETCNKGY-G 540
Query: 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
+II+ L +G+ +EA + + +S+ G + + Y +LI FCK + K G
Sbjct: 541 TTTATCNKIISELCSRGKSDEASEM-FKKMSETGIKADAIT--YNSLIRGFCK-EGKVG- 595
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ LN+LV + + + S+I LC+ G A+ L +M KG+EP +
Sbjct: 596 -KSMNLLNELV--AQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLRE 652
Query: 229 CIIYGYGRLG-LLEDMERIVNQMES 252
+I G + G E M+R++ +E+
Sbjct: 653 HLISGLCKQGRATEGMDRLMGMLEN 677
>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
Length = 745
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 78/177 (44%), Gaps = 10/177 (5%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVY 186
EEAE L+ E ++ + + Y LID +CK F A + + V + Y
Sbjct: 413 EEAEKLLQEMWARRLDVDE---VTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTY 469
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++ GLC+ G A L+ EM KGLE + Y +I G + G LE R
Sbjct: 470 T------ALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRT 523
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ M++ + D ++ + +L R LQ+M D GI ++ TYN ++N
Sbjct: 524 MADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNG 580
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +G+ A L++EM G+EP+ Y ++ G + D R+V M
Sbjct: 297 LIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRK 356
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D VLS + + +L W +M+ G+ TY +++N
Sbjct: 357 VILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMING 405
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++SG C G A +EM+ KGL G Y +I G R LE+ E+++ +M +
Sbjct: 366 TVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWAR 425
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VD V +++ Y +++ M G+ +V TY ++ +
Sbjct: 426 RLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDG 475
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 40/200 (20%), Positives = 76/200 (38%), Gaps = 30/200 (15%)
Query: 149 VLFYCNLIDSFCKHD------------SKRGFDDTYARLNQLVNSSSSVYVKRQALKSM- 195
V+ Y L D CK S +G + N L+N QA+++M
Sbjct: 466 VVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMA 525
Query: 196 -----------------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
I LC+ G A +L++EM KG++P+ Y ++ G+ G
Sbjct: 526 DMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSG 585
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+E +++++ M + N ++ Y N + + M+ + + TYN
Sbjct: 586 RVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPNENTYN 645
Query: 299 SVLNSCSTIMSMLQDLNSND 318
++ +M + L +D
Sbjct: 646 ILIKGHCKARNMKEALYFHD 665
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 74/157 (47%), Gaps = 7/157 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ +FCK DD Y Q+V + S V S++ GLC G+ +A
Sbjct: 322 VITYTTLMSAFCKMGR---LDDAYELFQQMVANKLSPDVV--TFTSLVDGLCGEGRMEDA 376
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EE+ +G P+ + Y C++ GY + + E +V S G +TV N++++
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAG 436
Query: 269 YGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSVLNS 303
+ + +L ++ G P SV Y +L++
Sbjct: 437 CCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDA 473
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 10/176 (5%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA L+L +++ G ++ Y +ID CK R D + ++ ++ Y
Sbjct: 236 DEAVALLLGEVTRRGFTPD--IVTYSTVIDGLCKAGRLRDAVDIFEEMS--CAPTAITY- 290
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
S+I G C G EA L+ +M P Y ++ + ++G L+D +
Sbjct: 291 -----NSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELF 345
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
QM ++ D V ++ + + L+++ G P ++ TYN V++
Sbjct: 346 QQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDG 401
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 90/220 (40%), Gaps = 19/220 (8%)
Query: 109 WNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P +V + +I L K G+ +A I E +S + + Y +LI +C+
Sbjct: 251 FTPDIVTYSTVIDGLCKAGRLRDAVD-IFEEMSCAPT-----AITYNSLIGGYCRAGD-- 302
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ L ++V+ + + V +++S C+MG+ +A L ++M L P
Sbjct: 303 -MDEAIRLLGKMVDDNCAPDVI--TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVT 359
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G G +ED ++ ++ G N V+ Y N++ + + +
Sbjct: 360 FTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFR 419
Query: 287 DSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFP 320
G + TYN ++ C + L LNS P
Sbjct: 420 SRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGP 459
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G+ ++A L+ L+ G V Y ++D+ C+ D + DD
Sbjct: 433 LVAGCCRAGRTDQALQY-LDQLNSEGGPCPTSVAMYAIILDALCR-DGRT--DDAVQFYE 488
Query: 177 QLVNSSSSVYVKRQA-LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ YV A +++ LC+ QP +A L+EEM G P ++ Y
Sbjct: 489 EMIQRG---YVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYC 545
Query: 236 RLGLLEDMERIVNQM 250
R G+++ + + +++
Sbjct: 546 RAGMIQKADELASEL 560
>gi|356497651|ref|XP_003517673.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 827
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 5/159 (3%)
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
S+ + ++ Y +LI CK + + D + + +SS +++I G C
Sbjct: 455 SQIKPSIVSYTSLIHGLCKKNMLQNAVDIFHSI-----GASSCKYDSTVYETLIDGFCMQ 509
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G A L+EEM L P+ F + +I GY +LGL + + N M DG DT+
Sbjct: 510 GDMDSAIKLLEEMICNELVPTAFSCRSLIRGYYKLGLFDQALEVFNAMLRDGIWPDTIAC 569
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N +L + L+ ++ G + +YN+++
Sbjct: 570 NYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSYNAII 608
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 81/219 (36%), Gaps = 35/219 (15%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCK 161
+E F NP II L K+G E A LE L ++ R V+ Y LI F K
Sbjct: 593 QEHGFNLNPHSYNAIIYKLCKEGYPERA----LELLPRMLKRNVLPSVVNYSTLISGFAK 648
Query: 162 HDS-KRGFD--------------DTYARLNQLVNSSSSVYVKRQALKSM----------- 195
+ KR + TY L + + S ++ K M
Sbjct: 649 QSNFKRAVNLFTRMVKVGITFNIATYTILMSIFSHSHKMHEAYGIFKEMKERGLCLDQIS 708
Query: 196 ----ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
I G C + +A L EEM +G P+ Y CII G+ + ++ + ++M
Sbjct: 709 YTTLIVGFCNNREMKKAWALFEEMSREGCSPNVITYTCIIDGFCKSNRIDLATWVFDKMN 768
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D D V +++ Y H + MKD G+
Sbjct: 769 RDSVIPDVVTYTVLIDWYHKHGYFDQAHKLYDVMKDKGV 807
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I GLC++G A LI + + + +IYG+ + G + + +++ +M+S
Sbjct: 361 TYIHGLCKVGNVEAALMLIRNLHYTNQPLNSHSFNDVIYGFCKRGEVFEALQVLEEMKSS 420
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D +++++++ ++ + + +++M+ S I S+ +Y S+++
Sbjct: 421 GILPDVYSYSILINAFCGKGDVMKCLDLMEEMEHSQIKPSIVSYTSLIHG 470
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
FD N ++ ++ A ++ G C G EA L+E+ + G + Y
Sbjct: 547 FDQALEVFNAMLRDG--IWPDTIACNYILDGSCRAGYFKEALTLLEDFQEHGFNLNPHSY 604
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
IIY + G E ++ +M V + ++S + + R V +M
Sbjct: 605 NAIIYKLCKEGYPERALELLPRMLKRNVLPSVVNYSTLISGFAKQSNFKRAVNLFTRMVK 664
Query: 288 SGIPFSVRTYNSVLN 302
GI F++ TY +++
Sbjct: 665 VGITFNIATYTILMS 679
>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 579
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 92/175 (52%), Gaps = 14/175 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC+ + EA NL +EM K + P Y +I G +LG + +V++M S G
Sbjct: 258 IINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIG 317
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIM 308
VD + N +L + ++ L + + ++++KD GI +V TY ++++ C
Sbjct: 318 KTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAY 377
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
+ Q++ + + +++ ++N +E ++++ +ED++ + +A+ +++
Sbjct: 378 VIFQEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYET 432
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 94/212 (44%), Gaps = 19/212 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +IDS CK + D Y ++++ + ++ ++ LC+ + +A
Sbjct: 147 VVMYSTIIDSLCK---GKFVTDAYRLYSEMI--AKGIFPNVYTFSILVDALCKDRKGKQA 201
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL+ M KG++P+ Y I+ GY + + I N M +G + C N++++
Sbjct: 202 MNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIING 261
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV------LNSCSTIMSMLQDLNSNDFPLS 322
+ + ++M I V TYN + L ST + ++ ++ S +
Sbjct: 262 LCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVD 321
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSV 346
I+ +L+ ++ +++VKE++D +
Sbjct: 322 IITYNSLLHALCKNHHLDQAITLVKEIKDQGI 353
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
M++ ++W + + + II L K +A L E ++K G V + L+D+
Sbjct: 135 MQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAK-GIFPN--VYTFSILVDA 191
Query: 159 FCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
CK K+ + + + V + Y +++ G C + Q ++A N+ M
Sbjct: 192 LCKDRKGKQAMNLLAMMMKKGVKPNVVTY------GAIMDGYCLVNQVNKALNIFNVMVQ 245
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+G+EP+ + Y II G + +++ + +M D V N+++ ++S
Sbjct: 246 EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIST 305
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M+ G + TYNS+L++
Sbjct: 306 SLELVDEMRSIGKTVDIITYNSLLHA 331
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L++E++ +G++P+ Y +I G + G LED I ++ ++
Sbjct: 327 SLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTE 386
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNSCS 305
G + N++++ + L +M+D+ IP +V +Y +++ + S
Sbjct: 387 GYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAV-SYETIIYALS 438
>gi|299469706|emb|CBN76560.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 915
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 59/114 (51%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S ISGL G+ EA+ L+ EM +GL+P F + + G+ G + + ++M+
Sbjct: 436 FNSAISGLSRAGRAREAKALLNEMSERGLKPDNFSFNAAMQGFAAAGDPRNTASLSDEMK 495
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
S G +D V +S+ ++ + L++M+++G+ + YNS L++C
Sbjct: 496 SRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACG 549
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 49/112 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ +S + G A L++EM+ G+EP+ Y + GR G + E+++ +M
Sbjct: 508 TAVSACAKAGDVKGALKLLKEMQEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGET 567
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D + + + + + + WL+ M GI TYN + +C
Sbjct: 568 GVVRDATSYTGAIVACSRNGDGDKALEWLETMSKEGIAPEAITYNYAMAACG 619
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 47/93 (50%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G +AE L+ EMR +G+ P+ Y ++ G+ G L D+ ++ +M +G D V
Sbjct: 622 GNDRQAEWLLNEMRGQGVTPNRISYSAAMFALGKAGRLPDVLSLLEEMHREGVEADEVTY 681
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
++ + + +L + ++M+ G+P + R
Sbjct: 682 HIAVDAASIARDLGCAMDLFREMRARGLPVTKR 714
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 50/115 (43%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ + + G G P +L +EM+ +G+ Y + + G ++ +++ +M
Sbjct: 470 SFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACAKAGDVKGALKLLKEM 529
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ G +TV N L + G + L+KM ++G+ +Y + +CS
Sbjct: 530 QEAGVEPNTVVYNSALDACGRAGKPKVAEKLLRKMGETGVVRDATSYTGAIVACS 584
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 2/108 (1%)
Query: 200 CEMGQ-PHEAENLIEEM-RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
C G P EA L+ M + G++P+ + I G R G + + ++N+M G +
Sbjct: 407 CGKGDAPDEALKLLRGMEKAYGVKPNTVTFNSAISGLSRAGRAREAKALLNEMSERGLKP 466
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D N + + + +MK GI V +Y + +++C+
Sbjct: 467 DNFSFNAAMQGFAAAGDPRNTASLSDEMKSRGIGMDVVSYGTAVSACA 514
>gi|226500056|ref|NP_001147821.1| pentatricopeptide repeat 2 [Zea mays]
gi|195613946|gb|ACG28803.1| PPR2 [Zea mays]
Length = 562
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++ ++I L + GQ A L E L + EL Y
Sbjct: 191 ALQVFEMLKEQPFYHPKEGTYMKLIVLLGRSGQPTRAHQLFDEMLQQGCQPTPEL---YT 247
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI ++C+ D+ LN + +S VY ++I + + +
Sbjct: 248 ALIGAYCRSCL---LDEALQLLNDMKSSPLCQPDVYT----YSTIIKACVDAARFDLTDT 300
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
+ ++M + + P+ ++ GYG+ G L+DMER+++ M +S + D N++LS +
Sbjct: 301 MYKDMAERSISPNTVTQNIVLSGYGKAGRLDDMERVLSDMLDSVSCKPDVWTMNIILSLF 360
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ E+ M W +K + G+ RT N ++ +
Sbjct: 361 GNRGEVELMERWYEKFRGYGVEPETRTLNILIGA 394
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I E G E+ +MR +G+ P + C+I G+ R G + +V E
Sbjct: 425 NVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFSRAGQFHKVVGMVKLAERL 484
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V+T N VL + ++L M ++MK + TY+ ++ +
Sbjct: 485 DVPVNTPFHNAVLGACARADDLVEMERVFRRMKHTQCEPDASTYSILVEA 534
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 44/95 (46%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E MR + Y +I + G +ME NQM S+G R DT ++ +
Sbjct: 407 VMEHMRKLAFPWTTATYNNVIEAFAEAGDAGNMEHAFNQMRSEGMRPDTKTFCCLIDGFS 466
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ ++V ++ + +P + +N+VL +C+
Sbjct: 467 RAGQFHKVVGMVKLAERLDVPVNTPFHNAVLGACA 501
>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 730
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
E+V+F LI F H DD A L+ +V +S + S+I G + G
Sbjct: 352 EIVIFN-TLIHGFVTHGR---LDDAKAVLSDMV-TSYGIVPDVCTYNSLIYGYWKEGLVG 406
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A ++ +MR KG +P+ + Y ++ G+ +LG +++ ++N+M +DG + +TV N ++
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S++ + + V ++M G V T+NS+++
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C++G+ EA N++ EM GL+P+ + C+I + + + + I +M G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D N ++S + +E+ + L+ M G+ + TYN+++N+
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI++F + + + +N++V S + S+I GLC G+ +A +L
Sbjct: 532 YNTLINAFLRRGEIK---EARKLVNEMVFQGSPL--DEITYNSLIKGLCRAGEVDKARSL 586
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E+M G PS +I G R G++E+ +M G+ D V N +++
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 646
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + +K++ GIP T+N++++
Sbjct: 647 AGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +EA +L +S G + V F C LI +FCK + + + +
Sbjct: 436 KLGKIDEAYN-VLNEMSADGLKPNT-VGFNC-LISAFCKEHRIPEAVEIFREMPR-KGCK 491
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
VY S+ISGLCE+ + A L+ +M +G+ + Y +I + R G +++
Sbjct: 492 PDVY----TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++VN+M G+ +D + N ++ E+ + +KM G S + N ++N
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607
Query: 303 S 303
Sbjct: 608 G 608
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 114/286 (39%), Gaps = 37/286 (12%)
Query: 31 LTARLTKQGQRFLSSLALAVTRDSKAA------SRLI---SKFVASSPQFIALNALSHLL 81
L ++ +G F SL +++ RD A +RL+ + P F + N + +L
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192
Query: 82 SPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL 141
H +++ + + R + F + + A ++ +L ++K
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV------NEIDSALSLLRDMTKH 246
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV-----KRQALKSMI 196
G ++ Y LI S K + R+N+ + +++ + +I
Sbjct: 247 GCVPNSVI--YQTLIHSLSKCN----------RVNEALQLLEEMFLMGCVPDAETFNDVI 294
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
GLC+ + +EA ++ M ++G P Y ++ G ++G ++ + + ++ +
Sbjct: 295 LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI----PK 350
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS-GIPFSVRTYNSVL 301
+ V N ++ + H L L M S GI V TYNS++
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
>gi|341605743|gb|AEK82974.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605753|gb|AEK82979.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605831|gb|AEK83018.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
Length = 591
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 9/210 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L +R+ E+ + N + +I K G + A +L+ E K + + Y
Sbjct: 197 AFDL-LRLMEQGSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPD---IFTYS 252
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID+ CK + + L ++Y S+I GLC+ G+ +AE ++
Sbjct: 253 TLIDALCKLSQWENVRTLFLEMIHL-----NIYPNVCTFNSVIDGLCKEGKVEDAEEIMR 307
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
M KG++P Y II GYG G ++ I + M + D + N++++ Y
Sbjct: 308 YMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQK 367
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +++ G+ S+ T N +L+
Sbjct: 368 KIDEAMQVCREISQKGLKPSIVTCNVLLHG 397
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q ++I GLC+ G+ +A E++ + GL P Y +I GY + GLL++ + ++ +
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
ME +G D N+++ + N++S M +L+++ F T
Sbjct: 519 MEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAAT 565
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 67/162 (41%), Gaps = 10/162 (6%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181
K G EEA + KL R + + Y +ID CK+ T+ +L L+
Sbjct: 435 KNGLVEEA----MSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKL-PLIGL 489
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
V +MISG C+ G EA++++ +M G Y I+ G+ R +
Sbjct: 490 HPDVI----TYTAMISGYCQEGLLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVS 545
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+M+ + ++ + +++ + ++R + W++
Sbjct: 546 EMKAFLEEIAGKSFSFEAATVELLMDIIAEDPSITRKMHWIK 587
>gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010
gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana]
gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 642
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI++ K ++ + L + N SS VY MI + G+ EA +
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRVYA------VMIKHFGKCGKLSEAVD 500
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM+ +G P + Y ++ G + G++ + ++ +ME +G R D N++L+ +
Sbjct: 501 LFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
R + + +K SGI TYN++L C M ++
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEE 602
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I G+ E + +++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
V + +++ +G +LS V +MK+ G V YN+++ S M+ +
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM-SGMVKAGMINEA 533
Query: 315 NS 316
NS
Sbjct: 534 NS 535
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L ++GQ E+ + E ++ + Y LI S+ K G +D+ RL
Sbjct: 203 VILMLMQEGQHEKVHEVYTEMCNEGDCFPDTIT--YSALISSY----EKLGRNDSAIRLF 256
Query: 176 ----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ + + +Y +++ ++G+ +A +L EEM+ G P+ + Y +I
Sbjct: 257 DEMKDNCMQPTEKIYT------TLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G+ G +++ M DG D V N +++ G + + +M
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 292 FSVRTYNSVLNS 303
+V +YN+V+ +
Sbjct: 371 PTVVSYNTVIKA 382
>gi|357479161|ref|XP_003609866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510921|gb|AES92063.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 96/205 (46%), Gaps = 14/205 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E+S++Q ++I L K GQ + A L + + EL Y L+ ++C+
Sbjct: 130 EQSFYQPREGTYMKLIVLLGKSGQPQRAHQLFTAMIEEGCDPTPEL---YTALLAAYCRS 186
Query: 163 DSKRGFDDTYARLNQLVNS---SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
+ D+ + L+++ N V+ ++I ++ + E L EEM +
Sbjct: 187 NM---IDEALSILDEMKNHPLCQPDVFT----YSTLIKACVDIFKFELIELLYEEMAQRS 239
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+ P+ ++ GYG+ G+ + ME++++ M +S + D N ++ +G+ ++ M
Sbjct: 240 IMPNTVTQNIVLNGYGKAGMFDQMEKVLSGMLQSADCKPDVWTMNTIIGVFGNMGQIDMM 299
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
W +K ++ GI RT+N ++ S
Sbjct: 300 EKWYEKFRNFGIEPETRTFNILIGS 324
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 48/102 (47%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E MR + Y +I + G ++ME NQM S+G R DT ++ +
Sbjct: 337 VMEYMRKLQFPWTTSTYNNVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFA 396
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ +++ +Q IP + YN+VL++C+ +++
Sbjct: 397 NAGLFHKVISSVQLAAKLEIPLNTAFYNAVLSACAKAEDLME 438
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 41/104 (39%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I E G E +MR +G+ + C+I G+ GL + V
Sbjct: 355 NVIEAFAEAGDAKNMEYTFNQMRSEGMRADTKTFCCLIKGFANAGLFHKVISSVQLAAKL 414
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++T N VLS+ +L M +MKD+ P TY
Sbjct: 415 EIPLNTAFYNAVLSACAKAEDLMEMDRVFMRMKDTQCPLDDTTY 458
>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 550
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/222 (22%), Positives = 111/222 (50%), Gaps = 21/222 (9%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L+D +C + ++ +++L V + MI+GL ++ EA
Sbjct: 304 VVTYSSLMDGYCLVNEVNKAKHVFSTMSRL-----GVAPHAHSYNIMINGLGKIKMVDEA 358
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L +EM KG+ P Y +I G +LG + ++V++M ++G D + N ++
Sbjct: 359 LSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV 418
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C-----STIMSMLQDL-------N 315
++ + + + ++K+KD GI S+ TYN +++ C + QDL N
Sbjct: 419 LCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVN 478
Query: 316 SNDFPLSILELTE--VLNEEEVSVVKELEDSSVLDEAMKWDS 355
+ + + I L + + NE EV ++ ++E++ ++ +A+ +++
Sbjct: 479 AWTYNIMINGLCKEGLFNEAEV-LLSKMENNGIIPDAVTYET 519
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 82/191 (42%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ A ++ + KL + + V+ Y +I+S CK + D Y +
Sbjct: 170 LINGLCKIGETRAALQMLKKIEGKLVNTD---VVMYNIIINSLCK---DKAVSDAYQLYS 223
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ S V S+I G C +GQ EA L EM +K + P + + ++ +
Sbjct: 224 EMITKRISPDV--VTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCK 281
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + ++ M G D V + ++ Y NE+++ M G+ +
Sbjct: 282 DGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHS 341
Query: 297 YNSVLNSCSTI 307
YN ++N I
Sbjct: 342 YNIMINGLGKI 352
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y +LID CK +YA QLV+ + + L S+I LC+ +A
Sbjct: 377 YNSLIDGLCKLGRI-----SYAW--QLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAI 429
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+++++ +G++PS + Y +I G + G L++ + + + G V+ N++++
Sbjct: 430 ALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGL 489
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L KM+++GI TY +++
Sbjct: 490 CKEGLFNEAEVLLSKMENNGIIPDAVTYETII 521
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK + D + L L+ S V MI+GLC+ G +EAE L
Sbjct: 447 YNILIDGLCKGGRLKNAQDVFQDL--LIKGYS---VNAWTYNIMINGLCKEGLFNEAEVL 501
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +M G+ P Y+ II R E E+++ +M
Sbjct: 502 LSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREM 540
>gi|341605791|gb|AEK82998.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCXNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera]
Length = 638
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVN-SSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI++ K ++ + L + SS+ VY MI L + G+ EA +
Sbjct: 444 YCSLINALGKAKRYEAANELFQELRENCGYSSARVYA------VMIKHLGKCGRLSEAVD 497
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM+ G P + Y ++ G R+G+ ++ ++ ME +G D N++L+ +
Sbjct: 498 LFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFA 557
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ +MK+S I V +YN+VL S +++++NS F ++
Sbjct: 558 RTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYDLI 617
Query: 325 ELTEVL 330
+ +L
Sbjct: 618 TYSSIL 623
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 78/205 (38%), Gaps = 8/205 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + E A L E G + Y +I K
Sbjct: 433 DEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARV---YAVMIKHLGKC 489
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D + + +L + VY A +++SG+ +G EA +L+ M G P
Sbjct: 490 GRLSEAVDLFNEMKKL-GCNPDVY----AYNALMSGMVRVGMTDEAHSLLRTMEENGCTP 544
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ I+ G+ R G + + +M++ + D V N VL +
Sbjct: 545 DLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEAAKLM 604
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTI 307
++M G + + TY+S+L + I
Sbjct: 605 KEMNSKGFEYDLITYSSILEAVGKI 629
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +F K G DD+ L + + ++ + +++ ++G+ +A L
Sbjct: 233 YSALIAAF----GKLGRDDSAISLFDEM-KENGLHPTAKIYTTILGIYFKLGRVEKALGL 287
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++EM+ KG + + Y +I G G+ G +E+ I M +G + D V N +++ G
Sbjct: 288 VQEMKEKGCALTVYTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGK 347
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L+ + ++M+ +V TYN+V+ +
Sbjct: 348 AGRLADAIKLFEEMESLQCTPNVVTYNTVIKA 379
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 86/187 (45%), Gaps = 18/187 (9%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G+ + G+ EA ++ M +G +P +I G+ G L D ++ +MES
Sbjct: 306 LIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEMESLQ 365
Query: 255 TRVDTVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----I 307
+ V N V+ + + S LW +KMK++G+ S TY+ +++ C T
Sbjct: 366 CTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNRVEKA 425
Query: 308 MSMLQDLNSNDF---PLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
+ +L++++ F P + L L + K E ++ L + ++ + G + ++
Sbjct: 426 LLLLEEMDEKGFAPCPAAYCSLINALGK-----AKRYEAANELFQELRENCGYSSARVYA 480
Query: 365 M---HLG 368
+ HLG
Sbjct: 481 VMIKHLG 487
>gi|341605731|gb|AEK82968.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605733|gb|AEK82969.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605735|gb|AEK82970.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRXNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|399107188|gb|AFP20358.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|341605685|gb|AEK82945.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKXDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|260766045|gb|ACX50053.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 187
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 9/191 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q P + + +I L K+G+ E + E + + GS+ V Y LID + K S
Sbjct: 2 QVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKSGS--- 55
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D L+++++ V ++ +++GLC+ G+ EA + + R GL + Y
Sbjct: 56 VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFY 113
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-K 286
+I G G+ G +++ ER+ +M G D+ C N ++ + H ++ + ++M +
Sbjct: 114 SSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEE 173
Query: 287 DSGIPFSVRTY 297
+ G +V TY
Sbjct: 174 EEGCDQTVYTY 184
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G
Sbjct: 11 VIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEG 70
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 71 FKPDVVTYSVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 119
>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
Length = 1023
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 61/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A L EEM+ +GL P Y +I GYG++G L+D +M+S
Sbjct: 139 MIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + + ++MK SG+ +V +Y++++++
Sbjct: 199 CEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDA 247
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 30/175 (17%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+C LID CK+ D + R++ + +++++Y +MI GLC+ Q A
Sbjct: 451 FCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYT------AMIDGLCKEDQVEAAT 504
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME----SDGTRVDTVCSNMV 265
L E+M KGL P Y +I G + G + + ++M G R +C N +
Sbjct: 505 TLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVESGARFGDLCQNTI 564
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFP 320
S RM G V+ YN + ++ S I S L DLNS D P
Sbjct: 565 KLSL-------RM----------GARVGVQHYN-LGSADSYISSSLNDLNSVDGP 601
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ +G+ + ++M G +P+ F Y +I + G +E
Sbjct: 94 VFPKTRSCNGLLHKFARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAAS 153
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ YG L V + ++MK V TYN+++N
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLIN 211
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 77/154 (50%), Gaps = 9/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAE 209
Y +L+D++CK + D + +L + S V V+ + ++I GLC++ + EAE
Sbjct: 276 YTSLVDAYCKIGN---LSDAF----RLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAE 328
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L +M G+ P+ Y +I+G+ + ++ ++++M+ G + D + + S
Sbjct: 329 ELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSL 388
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + +M++ GI + Y +++++
Sbjct: 389 CGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/121 (19%), Positives = 56/121 (46%), Gaps = 5/121 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID C + + ++ + ++ ++ V + ++I G + A
Sbjct: 308 VVTYTALIDGLCDVERIKEAEELFGKM-----VTAGVIPNLASYTALIHGFVKAKNMDRA 362
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++EM+ +G++P Y I+ L +E + ++N+M+ G + +T ++ +
Sbjct: 363 LELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDA 422
Query: 269 Y 269
Y
Sbjct: 423 Y 423
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +AE +LE L G + Y LI+ +C+ R ++ Q+ S
Sbjct: 347 KDGKVAKAEQ-VLEMLVHTGLVPTTAI--YNTLINGYCQ---VRDLQGAFSIFEQM--KS 398
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ ++I+GLC+M EAE+L+ EM G++PS + +I YGR G LE
Sbjct: 399 RHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEK 458
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M+ G + + + V+ ++ + ++ V L M + + + YNS+++
Sbjct: 459 CFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIID 518
Query: 303 S 303
+
Sbjct: 519 A 519
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 112/245 (45%), Gaps = 15/245 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E+S + + +I + GQ E+ T +L + G + V+ + +++ +FCK+
Sbjct: 432 EKSGVDPSVETFNTLIDAYGRAGQLEKCFT-VLSDMQDKGIKSN--VISFGSVVKAFCKN 488
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ A L+ +++ V Q S+I E G +A L+E+M+ G+
Sbjct: 489 GK---IPEAVAILDDMIHKD--VVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVSA 543
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
S F Y ++ G + +++ E ++ + + G R D V N ++S+ + + R + L
Sbjct: 544 SIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELL 603
Query: 283 QKMKDSGIPFSVRTYN---SVLNSCSTIMSM----LQDLNSNDFPLSILELTEVLNEEEV 335
Q+M I ++RTY+ S L S + M ++ N P S + T NE +V
Sbjct: 604 QEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGTRCENESKV 663
Query: 336 SVVKE 340
+ +K+
Sbjct: 664 ASLKK 668
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G+ +AE ++E + GL P+ Y +I GY ++ L+ I QM+S
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CS 305
R D + N +++ ++ + +M+ SG+ SV T+N+++++ C
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCF 460
Query: 306 TIMSMLQD 313
T++S +QD
Sbjct: 461 TVLSDMQD 468
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%)
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D+ A L ++ S + + +I+GL G+ +A + +EM +G+ P+ Y
Sbjct: 174 LDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITY 233
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+I G+ + G LE R+ +QM DG + + V N++LS
Sbjct: 234 NTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSG 274
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + P GF Y + G R G M + + G
Sbjct: 271 LLSGLCRAGRMDETRALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKG 330
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++L+ ++++ L+ + +G+ + YN+++N
Sbjct: 331 VIIGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLING 379
>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
Length = 333
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C+ K +D + L++++N + S+I G C G + +
Sbjct: 159 YSILIDSHCE---KGQVEDAFGFLDEMINKG--ILPNIMTYNSIIKGYCRSGNVSKGQKF 213
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++M V + P Y +I+GY + + D +++N ME + + D V NM+++ +
Sbjct: 214 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 273
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H + +KM GI TY S++N
Sbjct: 274 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMING 305
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 141 LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
L R R ++ Y LID C+ +D + ++ S ++ +I C
Sbjct: 113 LNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMH-----SREIFPNHVTYSILIDSHC 167
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
E GQ +A ++EM KG+ P+ Y II GY R G + ++ + +M + D +
Sbjct: 168 EKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLI 227
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
N ++ Y +++ L M+ + V TYN ++N S
Sbjct: 228 TYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 273
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EMR GL P G Y +I G+ R GL+ D R+ ++M G D V N +L+
Sbjct: 4 LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L L +M++ G+P + T+ ++++
Sbjct: 64 ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHG 95
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ CK +R D LN++ V ++I G C G+ +A
Sbjct: 51 VVTYNTLLNGLCK---ERRLLDAEGLLNEM--RERGVPPDLCTFTTLIHGYCIEGKLDKA 105
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M + L P Y +I G R G L+ + + M S + V ++++ S
Sbjct: 106 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 165
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ +L +M + GI ++ TYNS++
Sbjct: 166 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKG 200
>gi|341605737|gb|AEK82971.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605739|gb|AEK82972.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605741|gb|AEK82973.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRXNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 71/146 (48%), Gaps = 9/146 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y L+D FCK +G+ + +L + S Y+K + ++ +C+ G +A
Sbjct: 446 YSILLDGFCK----QGY---LGKAFRLFRAMQSTYLKPNLVMYTILVHAMCKSGNHKDAR 498
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L E+ V+GL+P Y II G + GLL++ ME+DG D + N+++
Sbjct: 499 KLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYNVIIRGL 558
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVR 295
H + SR +L + +M+D G VR
Sbjct: 559 LQHKDESRALLLVGEMRDRGFIADVR 584
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I+GLC++G+ +A L ++M KG +P + Y II G ++G ++ +ME
Sbjct: 166 FTTLINGLCKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKME 225
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + V + ++ S ++ + MK GI + TY S++
Sbjct: 226 EAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLI 275
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 56/108 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC +EA ++ M+ KG+ P F Y +I G + ++ ++N+M S
Sbjct: 238 TLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSL 297
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V N+++ ++ ++S + L+ M + G+ +V TY+S++
Sbjct: 298 NIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLM 345
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 15/160 (9%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y LI+ +CK +KR D+ N++++ + + ++I G C++G+ EA
Sbjct: 373 IFSYNILINGYCK--AKR-IDEAMQLFNEMIHQGLTP--NNVSYNTLIHGFCQLGKLREA 427
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++L M G P F Y ++ G+ + G L R+ M+S + + V +++ +
Sbjct: 428 QDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHA 487
Query: 269 Y---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNS 303
G+H + ++ L++Q G+ V+ Y +++N
Sbjct: 488 MCKSGNHKDARKLFSELFVQ-----GLQPHVQLYTTIING 522
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y +LI CK + + A LN++ +S ++ ++ C+ G+ EA
Sbjct: 268 IFTYTSLIQGLCKFSR---WKEASALLNEM--TSLNIMPDIVTFNVLVDTFCKEGKVSEA 322
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++ M G+EP+ Y ++YGY + + ++ + M + G + + N++++
Sbjct: 323 LGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILING 382
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + +M G+ + +YN++++
Sbjct: 383 YCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHG 417
>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
Length = 573
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQME 251
+ISGLC+ GQ +A ++ ++MR GL PS Y +I GY GR G + ++ ++ +M
Sbjct: 194 VISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMN 253
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N++++ Y + ++ + ++M+ GIP ++ TY S+++
Sbjct: 254 QAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C+ G EAE ++ M KG++P+ Y +I GY RLG +++ M
Sbjct: 333 LNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMA 392
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N +++ + + + L +MK++G+ + TYN ++ +
Sbjct: 393 GKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTYNVLIGA 444
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 22/179 (12%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD---SKRGFDDTYARLNQLVNSSSS 184
EE E L L TL L S +++ FCK G+ D A+ N +
Sbjct: 320 EEMEELGLATLPTLNS-----------VLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVT- 367
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
++I G +G+ EA M KG+ P Y C+I G+ +
Sbjct: 368 -------YNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVS 420
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++++M+ G + D V N+++ + E+ + V L +M + G+ RTYN+++N
Sbjct: 421 GLLDEMKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIING 479
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 10/160 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LI+ +CK + + + Q + S++SGLC G+ ++
Sbjct: 261 VVTFNVLINGYCKESNITAAIKVFEEMRQ-----HGIPANMVTYTSLVSGLCREGKVEDS 315
Query: 209 ENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
L+EEM GL P+ ++ G+ + G++ + E V+ M G + + V N ++
Sbjct: 316 MKLVEEMEELGLATLPT---LNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLI 372
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
Y ++ M GI V+TYN ++ +T
Sbjct: 373 DGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTT 412
Score = 44.7 bits (104), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 13/160 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRG----FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ Y LID + K + G D +NQ S + V +I+G C+
Sbjct: 223 VVTYNTLIDGYYKW-GRAGKMYHVDMLLKEMNQAGISPNVV-----TFNVLINGYCKESN 276
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRVDTVCSN 263
A + EEMR G+ + Y ++ G R G +ED ++V +ME G + T+ N
Sbjct: 277 ITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTL--N 334
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VL+ + + W+ M G+ +V TYN++++
Sbjct: 335 SVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDG 374
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM GLEP Y II G+ G + I +ME
Sbjct: 441 LIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCK 500
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R + V N+ L + ++ + L +M + G+ + TY ++NS
Sbjct: 501 KRANVVTCNVFLKYFCKMGKMDEANVVLNEMLEKGLVPNRITY-EIINS 548
>gi|341606829|gb|AEK83517.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 63 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDS------------KRG-- 167
K+G+ EAE L L + R L CN +I+ CK + RG
Sbjct: 448 KEGRASEAEDL----LQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503
Query: 168 ----FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+++ L + N+ ++I GLC++G+ EA+ + EM K L P
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD 563
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ IY Y + G L R++ +ME G N ++ G N++ + +
Sbjct: 564 SLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMD 623
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+MK+ GI +V TYN+++ SC + L+D
Sbjct: 624 EMKERGIFPNVYTYNNII-SCLSEGGKLKD 652
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LCEMG A + ++M KG +P+ F ++ GY R GL ++++M S G
Sbjct: 159 LISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSG 218
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+ V N V+SS + ++KM++ G+ + T+N
Sbjct: 219 ALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARL 175
+I+ L + G E A + + +S+ G + E L L+ +C+ G D L
Sbjct: 159 LISALCEMGYLENARE-VFDKMSEKGCKPNEFSLGI--LVRGYCRAGLHSHGID----LL 211
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ SS R A ++IS LC GQ EAE L+E+MR GL P + C I
Sbjct: 212 DEM--RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269
Query: 236 RLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+ G + + RI M+ D + +TV N++L + MK+S
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET- 328
Query: 292 FSVRTYN 298
S+R+YN
Sbjct: 329 LSLRSYN 335
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 39/293 (13%)
Query: 118 IAFLDKQGQREEAETLI--LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
IA L K GQ EA + ++ ++G + V Y +++ FC S+ F++ A
Sbjct: 265 IAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVT-YNLMLEGFC---SEGMFEEARAIF 320
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ + NS + + ++ + GL G+ EA ++ EM K ++P+ + Y +++G
Sbjct: 321 DSMKNSET---LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLC 377
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G+ D I+ M G DTV + +L Y ++ L++M G ++
Sbjct: 378 KYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMY 437
Query: 296 TYNSVLNS------CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDE 349
T N +L+S S +LQ +N + L + ++N L + LD+
Sbjct: 438 TCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMIN--------GLCKAGNLDK 489
Query: 350 AMK-----WDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEIT 397
A++ W G L +LG+++ + ++R NN K +P IT
Sbjct: 490 AIEIVSGMWTRGSASLG----NLGNSFIDLF----DIR---NNGKKCLPDSIT 531
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 17/199 (8%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A II L K G+ +EA+ +LE + K S + L + I ++CK +
Sbjct: 533 ATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDS---LIFDTFIYNYCKQGK---LSSAFRV 586
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L ++ + ++ S+I GL Q E L++EM+ +G+ P+ + Y II
Sbjct: 587 LKEMEKKGCNKSLR--TYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCL 644
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS------YGDHNELSRMVLWLQKMKDS 288
G L+D ++++M G + +++ + +G EL + L L K+S
Sbjct: 645 SEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKES 704
Query: 289 GIPFSVRTYNSVLNSCSTI 307
F +N +L T+
Sbjct: 705 LYSF---MFNELLAGGETL 720
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 7/158 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V Y +ID +CK D + + L Q + +S VY ++I C G E
Sbjct: 596 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVY------NTLIRAYCRNGNTVE 649
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L ++MR KG+ P+ Y +I+G +G +ED + ++++M +G + VC ++
Sbjct: 650 AFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIG 709
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y ++ ++V LQ+M I + TY +++ S
Sbjct: 710 GYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYS 747
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 22/188 (11%)
Query: 123 KQGQREEAETLILETLSK---LGSR-ERELVLFYC---NLIDSFCKHDSKRGFDDTYARL 175
K + EE E L E L++ L S L+ YC N +++F HD R
Sbjct: 608 KADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMR--------- 658
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ + +++ Y S+I G+C +G+ +A+ LI+EMR +GL P+ Y +I GY
Sbjct: 659 SKGIPPTTATY------SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYC 712
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+LG ++ + ++ +M S + + +++ Y ++ L +M GI
Sbjct: 713 KLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTV 772
Query: 296 TYNSVLNS 303
TYN + N
Sbjct: 773 TYNVLTNG 780
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 17/221 (7%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL--- 150
A L+ R+ E+ F N +I L K G +EA L+ + L ER VL
Sbjct: 475 AVELWFRLLEKG-FGANLVTTNALIHGLCKTGNMQEAVRLLKKML------ERGFVLDKI 527
Query: 151 FYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI CK + GF + Q + + Y +I G+C +G+ EA
Sbjct: 528 TYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY------NLLIHGMCRIGKLDEAV 581
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
NL E + + L P+ + Y +I GY + +E+ E++ ++ + +++V N ++ +Y
Sbjct: 582 NLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAY 641
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ M+ GIP + TY+S+++ I M
Sbjct: 642 CRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRM 682
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 91/190 (47%), Gaps = 8/190 (4%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172
L + I K G+ E+A L + + KLG V+ Y NLI CKH + D+ +
Sbjct: 248 LFSTAINAFCKGGKVEDAIQLFFD-MEKLGVSPN--VVTYNNLIHGLCKHGN---LDEAF 301
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++V + + ++ +I+GL ++ + +EA ++++E KG P+ Y +I
Sbjct: 302 RFKEKMVKDGVNATLITYSV--LINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLID 359
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY ++G L D RI M S G ++V N ++ + ++ + L++M G
Sbjct: 360 GYCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSI 419
Query: 293 SVRTYNSVLN 302
+ + ++++
Sbjct: 420 NPGAFTTIIH 429
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 111/277 (40%), Gaps = 52/277 (18%)
Query: 65 VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAFLD 122
+ SP + N L H L H L AF ++ ++ N L+ + +I L
Sbjct: 275 LGVSPNVVTYNNLIHGLC---KHGNLDE-AFRFKEKMVKDGV---NATLITYSVLINGLM 327
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K + EA +++ ETL K G E+V Y LID +CK + D +V S
Sbjct: 328 KLEKFNEANSVLKETLEK-GFTPNEVV--YNTLIDGYCKMGN---LGDALRIRGDMV--S 379
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ L S+I G C++GQ +AE ++EEM +G + + II+ E
Sbjct: 380 KGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFES 439
Query: 243 MERIVNQM------ESDG---TRVDTVC---------------------SNMVLSSYGDH 272
R + +M +DG T V +C +N+V ++ H
Sbjct: 440 ALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIH 499
Query: 273 N-----ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V L+KM + G TYN++++ C
Sbjct: 500 GLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGC 536
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 63/149 (42%), Gaps = 3/149 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI +C GF + L N V+ + ++S L + + ++ + E
Sbjct: 180 LIHVYCTQFRNVGFRNAIGVFRFLANKG--VFPTVKTCTFLLSSLVKANELEKSYWVFET 237
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
MR +G+ P + + I + + G +ED ++ ME G + V N ++ H
Sbjct: 238 MR-QGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGN 296
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +KM G+ ++ TY+ ++N
Sbjct: 297 LDEAFRFKEKMVKDGVNATLITYSVLING 325
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 34/260 (13%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK + + +L S + V ++I GLC+ G EA
Sbjct: 246 VYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVV-----TYNNLIHGLCKHGNLDEA 300
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M G+ + Y +I G +L + ++ + G + V N ++
Sbjct: 301 FRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDG 360
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
Y L + M GI + T NS++ I M E E
Sbjct: 361 YCKMGNLGDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQM--------------EQAE 406
Query: 329 VLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEM--RNRFN 386
+ EE +L + G +H + + S + L+++ EM RN
Sbjct: 407 CILEE------------MLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRP 454
Query: 387 NEKHVIPAEITVVCGSGKHS 406
N+ ++ + +C GKHS
Sbjct: 455 NDG-LLTTLVGGLCKEGKHS 473
>gi|115455297|ref|NP_001051249.1| Os03g0746400 [Oryza sativa Japonica Group]
gi|113549720|dbj|BAF13163.1| Os03g0746400, partial [Oryza sativa Japonica Group]
Length = 613
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L++++C ++ F YA L+++ V + ++ L + G+ EA
Sbjct: 364 VVTYTSLVEAYCM---EKDFQTVYALLDEMRKRRCPPNVVTYTI--LMHALGKAGRTREA 418
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++++ G+ P Y +IY GR G LED +V +M + G + N ++S+
Sbjct: 419 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 478
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
DH++ + L KM++ ++TY +L C
Sbjct: 479 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 514
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L ++ + +++ G C+ EA + +EE
Sbjct: 301 LLDTLCKERSVKRARGVFQELR------GTIPPDENSFNTLVHGWCKARMLKEALDTMEE 354
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ G PS Y ++ Y + + ++++M + V +++ + G
Sbjct: 355 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 414
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K+K+ G+ YNS++
Sbjct: 415 TREALDTFDKLKEDGVAPDASFYNSLI 441
>gi|399107200|gb|AFP20364.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 91/210 (43%), Gaps = 24/210 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDS------------KRG-- 167
K+G+ EAE L L + R L CN +I+ CK + RG
Sbjct: 448 KEGRASEAEDL----LQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIEIVSGMWTRGSA 503
Query: 168 ----FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+++ L + N+ ++I GLC++G+ EA+ + EM K L P
Sbjct: 504 SLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPD 563
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ IY Y + G L R++ +ME G N ++ G N++ + +
Sbjct: 564 SLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMD 623
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+MK+ GI +V TYN+++ SC + L+D
Sbjct: 624 EMKERGIFPNVYTYNNII-SCLSEGGKLKD 652
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LCEMG A + ++M KG +P+ F ++ GY R GL ++++M S G
Sbjct: 159 LISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSG 218
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+ V N V+SS + ++KM++ G+ + T+N
Sbjct: 219 ALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFN 262
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 15/187 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARL 175
+I+ L + G E A + + +S+ G + E L L+ +C+ G D L
Sbjct: 159 LISALCEMGYLENARE-VFDKMSEKGCKPNEFSLGI--LVRGYCRAGLHSHGID----LL 211
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ SS R A ++IS LC GQ EAE L+E+MR GL P + C I
Sbjct: 212 DEM--RSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALC 269
Query: 236 RLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+ G + + RI M+ D + +TV N++L + MK+S
Sbjct: 270 KSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSET- 328
Query: 292 FSVRTYN 298
S+R+YN
Sbjct: 329 LSLRSYN 335
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 128/293 (43%), Gaps = 39/293 (13%)
Query: 118 IAFLDKQGQREEAETLI--LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
IA L K GQ EA + ++ ++G + V Y +++ FC S+ F++ A
Sbjct: 265 IAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVT-YNLMLEGFC---SEGMFEEARAIF 320
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ + NS + + ++ + GL G+ EA ++ EM K ++P+ + Y +++G
Sbjct: 321 DSMKNSET---LSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLC 377
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G+ D I+ M G DTV + +L Y ++ L++M G ++
Sbjct: 378 KYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGCFPNMY 437
Query: 296 TYNSVLNS------CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDE 349
T N +L+S S +LQ +N + L + ++N L + LD+
Sbjct: 438 TCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMIN--------GLCKAGNLDK 489
Query: 350 AMK-----WDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEIT 397
A++ W G L +LG+++ + ++R NN K +P IT
Sbjct: 490 AIEIVSGMWTRGSASLG----NLGNSFIDLF----DIR---NNGKKCLPDSIT 531
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 17/199 (8%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A II L K G+ +EA+ +LE + K S + L + I ++CK +
Sbjct: 533 ATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDS---LIFDTFIYNYCKQGK---LSSAFRV 586
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L ++ + ++ S+I GL Q E L++EM+ +G+ P+ + Y II
Sbjct: 587 LKEMEKKGCNKSLR--TYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCL 644
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS------YGDHNELSRMVLWLQKMKDS 288
G L+D ++++M G + +++ + +G EL + L L K+S
Sbjct: 645 SEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKES 704
Query: 289 GIPFSVRTYNSVLNSCSTI 307
F +N +L T+
Sbjct: 705 LYSF---MFNELLAGGETL 720
>gi|399107202|gb|AFP20365.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKXDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVBEAMXLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+GLC+ EA NL++EM K + P+ Y +I G + G + D +VN+M + G
Sbjct: 265 MINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRG 324
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +L + ++++ + + L K+KD GI + TY +++
Sbjct: 325 QPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDG 373
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 103/248 (41%), Gaps = 26/248 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK R ++ L+ + V ++I LC+ +A +L
Sbjct: 87 YGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVV-----MYSTIIYSLCKDKLVIDAFDL 141
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M +K + P Y ++YG +G L++ + NQM + D N+++
Sbjct: 142 YSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCK 201
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL---------NSCSTIMSMLQ------DLNS 316
E+ + L M + V TYNS++ N + + + + D++S
Sbjct: 202 EGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHS 261
Query: 317 NDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQ 376
++ L T+++ +E V+++KE+ S+ + + S + G+H F
Sbjct: 262 YSVMINGLCKTKMV-DEAVNLLKEMHSKSMAPNTVTYSSL-----IDGLHKSGRIFDAWD 315
Query: 377 WMDEMRNR 384
++EM NR
Sbjct: 316 LVNEMHNR 323
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 19/138 (13%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LID H S R FD + +N++ N V S++ LC+ Q +A L
Sbjct: 297 YSSLIDGL--HKSGRIFD-AWDLVNEMHNRGQPADVI--TYNSLLDALCKNHQVDKAITL 351
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +++ +G++P + Y ++ G + G L+D + + + G +D++
Sbjct: 352 LTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKGYHLDSL----------- 400
Query: 272 HNELSRMVLWLQKMKDSG 289
+ + L KM+D+G
Sbjct: 401 ---FDKALSLLSKMEDNG 415
>gi|21686921|gb|AAK71569.2|AC087852_29 putative reverse transcriptase [Oryza sativa Japonica Group]
Length = 1833
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L++++C ++ F YA L+++ V + ++ L + G+ EA
Sbjct: 1584 VVTYTSLVEAYC---MEKDFQTVYALLDEMRKRRCPPNVVTYTI--LMHALGKAGRTREA 1638
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++++ G+ P Y +IY GR G LED +V +M + G + N ++S+
Sbjct: 1639 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1698
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
DH++ + L KM++ ++TY +L C
Sbjct: 1699 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 1734
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L ++ + +++ G C+ EA + +EE
Sbjct: 1521 LLDTLCKERSVKRARGVFQELR------GTIPPDENSFNTLVHGWCKARMLKEALDTMEE 1574
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ G PS Y ++ Y + + ++++M + V +++ + G
Sbjct: 1575 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 1634
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K+K+ G+ YNS++
Sbjct: 1635 TREALDTFDKLKEDGVAPDASFYNSLI 1661
>gi|341605773|gb|AEK82989.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|357157771|ref|XP_003577908.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Brachypodium distachyon]
Length = 512
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 96/211 (45%), Gaps = 8/211 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E+ ++ +++ L + GQ A L + + EL Y
Sbjct: 141 ALQVFEMLKEQPFYYPKEGTYMKLLLLLGRSGQPALAHRLFADMQQQGCQPTPEL---YT 197
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LI ++C+ G D RL + ++ ++I L + + + + +
Sbjct: 198 ALIAAYCRS----GLLDDALRLLGDMKAAPLCQPDVYTYSTLIKALVDASRFDLVDAMYK 253
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGDH 272
EM +G+ P+ ++ GYGR G ++DME++++ M +S ++ D N++LS +G+
Sbjct: 254 EMAERGVAPNTVTQNIVLSGYGRAGRMDDMEKLLSAMLDSTASKPDVWTMNIILSLFGNS 313
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ M W +K + GI RT N ++ +
Sbjct: 314 GQVDLMEKWYEKFRGYGIEPETRTLNILIGA 344
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 40/93 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I E G E +MR +G++P + C+I G+ + GL + +V E
Sbjct: 375 NVIEAFAEAGDEKNMEQTFNQMRSEGMKPDTKTFCCLINGFSKAGLFHKVVGMVKLAERL 434
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+T N VL++ +L M + MK
Sbjct: 435 DVPANTSFHNSVLAACARAGDLVEMERVFRHMK 467
>gi|341605797|gb|AEK83001.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605799|gb|AEK83002.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605801|gb|AEK83003.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 412
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 69/139 (49%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+RG+ N L+ V+ A +I GLC++G EA+ + EEM+ +G+ P+
Sbjct: 38 RRGYIPDIVTYNTLIKGLCRVHRISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNV 97
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +++G+ G LE+ +R+ N+M G + + V N+++ ++ L+
Sbjct: 98 ISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEV 157
Query: 285 MKDSGIPFSVRTYNSVLNS 303
GI + TYNS+++
Sbjct: 158 TIQRGIILDLVTYNSLIDG 176
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 16/141 (11%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +D CK+ + N+L S + + ++ +I GLC+ G+ A
Sbjct: 275 YVIFLDGLCKNGV---LFEAMELFNEL--KSYNFKLDFESYSRLIDGLCKAGKVEIAWEF 329
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDMERIVNQMESDGTRVDTVCSNM 264
+++ +GL+P+ +I+G+ R+ L E ME+ ME +G D + N
Sbjct: 330 FKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEK----MEENGCTPDIITYNT 385
Query: 265 VLSSYGDHNELSRMVLWLQKM 285
+L + + N+L +V L KM
Sbjct: 386 LLRGFCESNKLEEVVNLLHKM 406
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 87/213 (40%), Gaps = 34/213 (15%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVN 180
G+ EE++ L E + + + LV F LID CK ++K+ + T R
Sbjct: 111 GKLEESKRLFNEMVDQ--GVQPNLVQFNV-LIDILCKEGKVIEAKKLLEVTIQR------ 161
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ + S+I G C++G A L M KG E + Y +I GY ++ +
Sbjct: 162 ---GIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKV 218
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSS------YGDHNELSRMVLWLQKMKDSGIPFSV 294
E+ + N+M G R + + +L+ GD N+L + MK SGI
Sbjct: 219 EEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGV------MKASGISVDS 272
Query: 295 RTYNSVLNS-CST-----IMSMLQDLNSNDFPL 321
Y L+ C M + +L S +F L
Sbjct: 273 CIYVIFLDGLCKNGVLFEAMELFNELKSYNFKL 305
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 12/196 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K G +A ++ + + K + V + LID +CK + D
Sbjct: 426 IINGLCKMGNISDAAVVMNDAIVKGYLPD---VFTFNTLIDGYCK---RLKLDSAL---- 475
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
QLV + + + S+++GLC+ G+ E EEM +KG P+ Y +I +
Sbjct: 476 QLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENF 535
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
++ LE+ ++ +M DG D V N ++ + + +L L QK+ + G +
Sbjct: 536 CKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATA 595
Query: 295 RTYNSVLNSCSTIMSM 310
T+N ++ + S+ ++M
Sbjct: 596 DTFNILIGAYSSKLNM 611
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 82/184 (44%), Gaps = 14/184 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNS 181
K G +EA L+ + + K +R + YC+LI+ C D +R +L N
Sbjct: 327 KSGMLQEATELLKDAVFKGFVPDR---VTYCSLINGLCAEGDIERAL--------ELFNE 375
Query: 182 SSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ + +K + S++ GLC G A ++ EM +G P + Y II G ++G
Sbjct: 376 AQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGN 435
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ D ++N G D N ++ Y +L + +++M GI V TYNS
Sbjct: 436 ISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNS 495
Query: 300 VLNS 303
VLN
Sbjct: 496 VLNG 499
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 77/183 (42%), Gaps = 9/183 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L + G+ EEA L+ ++G+ V+ Y L+ CK DSK + L +++N
Sbjct: 256 LCEDGRLEEAVALV----ERMGAYVAPDVVTYNTLMRGLCK-DSK--VQEAAQYLGRMMN 308
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
++I G C+ G EA L+++ KG P Y +I G G +
Sbjct: 309 QGC--IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDI 366
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E + N+ ++ + D V N ++ + + + +M + G + TYN +
Sbjct: 367 ERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNII 426
Query: 301 LNS 303
+N
Sbjct: 427 ING 429
>gi|357162065|ref|XP_003579293.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Brachypodium distachyon]
Length = 858
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I +C+ G A ++ +M K ++P+ Y +I GY +L ++ ++ +M+S
Sbjct: 344 TFIDAICKCGNIELAMQVLLDMEAKNVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSL 403
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST-----IM 308
G ++D VC N VL+ Y + + + +M+DSGI TYNS++N I+
Sbjct: 404 GIQLDRVCYNTVLAIYVKAGKYGEIAIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIV 463
Query: 309 SML-QDLNSNDFPLSILELTEVLN 331
S L QD+ S+L + +++
Sbjct: 464 SFLVQDMRRRGVAPSVLTYSTLID 487
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 152 YCNLIDSFCKHDSK--RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
YC+++ D R + +A L + N S K + L + I L +M +P A
Sbjct: 162 YCHILRELGDRDKSAIRALEVFHAALPLVGNGSVD---KGKLLTAAIGALGKMSRPDLAR 218
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ G + F +I Y R GL+ + ++ M+ G R TV N V+ +
Sbjct: 219 RAFDAGIAGGYGNTVFANSALISAYARSGLVNEAMGVLESMKGAGLRPTTVTYNAVIDAC 278
Query: 270 GDHNELSRMVL--WLQKMKDSGIPFSVRTYNSVLNSCS 305
G R L + Q ++D P +T+NS+L++CS
Sbjct: 279 GKGGVDLRFTLGYFRQMLRDRLCP-DRKTFNSLLSACS 315
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 80/375 (21%), Positives = 143/375 (38%), Gaps = 68/375 (18%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E+S + + +I KQG R + + +++ + + G VL Y LID + K
Sbjct: 436 EDSGIEKDTVTYNSLINGYGKQG-RLDIVSFLVQDMRRRGVAPS--VLTYSTLIDIYSKA 492
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ Y + S + S I L + G A +L+ +M G++P
Sbjct: 493 GMHGDAFNVYLDFKE-----SGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGIKP 547
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH---------N 273
+ Y II +G+ +L + + +M G + + G
Sbjct: 548 NVVTYNTIIDAFGKSKVLSEEDPEAGEMGIVGVYNGQIIRAANPVTRGRSAIDVRMRRSQ 607
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS---------------------------- 305
EL ++ QKM G+ +V T++++LN+CS
Sbjct: 608 ELYFILELFQKMVQQGVRPNVVTFSAILNACSRCNNFEDAALLLEQLRLFDNFVYGVAYG 667
Query: 306 ----------TIMSMLQDLNSNDFPLSIL---ELTEVL-----NEEEVSVVKELEDSSVL 347
S+ L D P S LT+VL + VV E + V
Sbjct: 668 LLMGYQEIWSQAQSLFNQLGRMDSPTSSAFYNALTDVLWHFGQRQGAQLVVLEGVNRRVW 727
Query: 348 DEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHST 407
D W E LDLH M G+A ++ W+ +R+ E +P ++++ G GKHS
Sbjct: 728 DNT--WS--EFCLDLHLMSCGAAQAMVHAWLLNVRS-IVFEGRAMPEFLSILTGWGKHSK 782
Query: 408 VRGESSVKAMVKKMM 422
+ G S+++ +++ ++
Sbjct: 783 IAGASTLRHVIEALL 797
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 85/204 (41%), Gaps = 17/204 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID + K + Y ++ L + + R ++++ + G+ E
Sbjct: 374 VVTYSTLIDGYSKLEKYDEALKLYEKMKSL-----GIQLDRVCYNTVLAIYVKAGKYGEI 428
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ +EM G+E Y +I GYG+ G L+ + +V M G + + ++
Sbjct: 429 AIVCDEMEDSGIEKDTVTYNSLINGYGKQGRLDIVSFLVQDMRRRGVAPSVLTYSTLIDI 488
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IMSMLQDLNSNDF 319
Y G H + + L K+SG+ V ++S +++ + +S+L D+
Sbjct: 489 YSKAGMHGDAFNVYL---DFKESGLKPDVVLFSSFIDTLAKNGLVEWALSLLNDMTEMGI 545
Query: 320 PLSILELTEVLNEEEVSVVKELED 343
+++ +++ S V ED
Sbjct: 546 KPNVVTYNTIIDAFGKSKVLSEED 569
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 6/168 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+LE++ G R + Y +ID+ K F Y R Q++ + R+
Sbjct: 255 VLESMKGAGLRPTTVT--YNAVIDACGKGGVDLRFTLGYFR--QMLRDR--LCPDRKTFN 308
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++S G +A L +EM G+ + Y I + G +E +++ ME+
Sbjct: 309 SLLSACSRAGHLEDARALFDEMIHLGIGRDIYTYNTFIDAICKCGNIELAMQVLLDMEAK 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + V + ++ Y + + +KMK GI YN+VL
Sbjct: 369 NVKPNVVTYSTLIDGYSKLEKYDEALKLYEKMKSLGIQLDRVCYNTVL 416
>gi|218193742|gb|EEC76169.1| hypothetical protein OsI_13484 [Oryza sativa Indica Group]
Length = 1874
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L++++C ++ F YA L+++ V + ++ L + G+ EA
Sbjct: 1625 VVTYTSLVEAYC---MEKDFQTVYALLDEMRKRRCPPNVVTYTI--LMHALGKAGRTREA 1679
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++++ G+ P Y +IY GR G LED +V +M + G + N ++S+
Sbjct: 1680 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 1739
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
DH++ + L KM++ ++TY +L C
Sbjct: 1740 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 1775
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L ++ + +++ G C+ EA + +EE
Sbjct: 1562 LLDTLCKERSVKRARGVFQELR------GTIPPDENSFNTLVHGWCKARMLKEALDTMEE 1615
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ G PS Y ++ Y + + ++++M + V +++ + G
Sbjct: 1616 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 1675
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K+K+ G+ YNS++
Sbjct: 1676 TREALDTFDKLKEDGVAPDASFYNSLI 1702
>gi|341605693|gb|AEK82949.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + R G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCRFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
lyrata]
Length = 817
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 64/125 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+ + + EA+ L+EEMR++GLEP+ F Y +I GYG+LG + +E ++ +M S
Sbjct: 677 SLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 736
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ + +++ Y ++ L +M++ GI TY + +LQ
Sbjct: 737 NVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQGGVLQA 796
Query: 314 LNSND 318
+D
Sbjct: 797 FKGSD 801
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG-------------YG 235
R + ++ISG C + EA ++EM KGL+P + Y +I G +G
Sbjct: 532 RVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWG 591
Query: 236 ---RLGLLEDM-------------------ERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
R G++ D+ +++ ++M S+ + +TV N ++ +Y
Sbjct: 592 DCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSG 651
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
LS + + MK GI + TY S++ S I
Sbjct: 652 RLSMALELREDMKHKGISPNSATYTSLIKGMSII 685
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK + ++++ + + V ++I GL G+ EA
Sbjct: 252 VYLFTTAINAFCKGGKVEEAIELFSKMEE-----AGVVPNVVTYNTVIDGLGMSGRYDEA 306
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M +G+EP+ Y ++ G + + D ++ +M G + + N ++ S
Sbjct: 307 FMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDS 366
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++ + M G+ + TYN+++
Sbjct: 367 LIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 401
>gi|242048026|ref|XP_002461759.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
gi|241925136|gb|EER98280.1| hypothetical protein SORBIDRAFT_02g007610 [Sorghum bicolor]
Length = 896
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 111/258 (43%), Gaps = 16/258 (6%)
Query: 47 ALAVTRDSKAASRLISKF--VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
AL TR A R+I+ + P F A L ++ R L +R +E
Sbjct: 156 ALVRTRRLDDAERVIAAMRRLKFRPAFSAYTVLIGAMAEARQPERALEL-----LRQMQE 210
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
++ L ++ L ++G+ E A L+ E K E ++VL Y ID F K +
Sbjct: 211 VGYEVGVPLFTTLVRALAREGRVEGALALVDEV--KGSCLEPDIVL-YNVCIDCFGKAGN 267
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D + ++L S + + SMI LC+ G+ EAE L +M + P
Sbjct: 268 ---VDMAWKFFHEL--KSQGLKPDDVSYTSMIWVLCKAGRLSEAEELFGQMETERAVPCA 322
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ Y +I GYG G E+ ++++Q++ G V N +L+ G ++ + +
Sbjct: 323 YAYNTMIMGYGSAGQFENAYKLLDQLKERGCIPSVVSFNSILTCLGKKRKVDEALTLFEA 382
Query: 285 MKDSGIPFSVRTYNSVLN 302
MK P S TYN +++
Sbjct: 383 MKKDAEPNS-STYNIIID 399
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 63/114 (55%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G C+ G+ +A ++EEM+VK + P+ Y II G ++ L++ + +
Sbjct: 602 RAYNAVVDGFCKSGKLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 661
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ + + ++ +G + L L++M G+ +V T+NS++++
Sbjct: 662 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 715
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 73/156 (46%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y ++D FCK D Y L ++ V + + Y S+I GL ++ + E
Sbjct: 604 YNAVVDGFCKSGK---LDKAYEVLEEMKVKRVPPTVATY------GSIIDGLAKIDRLDE 654
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EE + KG+E + Y +I G+G++G +++ I+ +M G + N ++
Sbjct: 655 AYMLFEEAKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMD 714
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ E++ ++ Q MK+ + TY+ ++N
Sbjct: 715 ALVKAEEINEALICFQSMKEMKCSPNTYTYSILING 750
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 10/214 (4%)
Query: 96 PLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
P Y S NP V +I L K+G ++A L E + G +V Y
Sbjct: 444 PAYEMFETASQRGCNPNSVTYCSLIDGLGKKGNVDDAYRL-FENMLDTGHNANPVV--YT 500
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+LI +F H K + +N+ L + + + + G + + E
Sbjct: 501 SLIRNFFMHGRKEDGHKIFKEMNR-----RGCQPDLTLLNTYMDCVFKAGDVEKGRAIFE 555
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+++ G P Y +I+G + G + I + M+ G +D N V+ +
Sbjct: 556 DIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMKQQGFALDARAYNAVVDGFCKSG 615
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+L + L++MK +P +V TY S+++ + I
Sbjct: 616 KLDKAYEVLEEMKVKRVPPTVATYGSIIDGLAKI 649
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 57/240 (23%), Positives = 97/240 (40%), Gaps = 44/240 (18%)
Query: 101 ITEESWFQWNPKLVA---EIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLI 156
+ EE + P VA II L K + +EA L E SK EL V+ Y +LI
Sbjct: 623 VLEEMKVKRVPPTVATYGSIIDGLAKIDRLDEAYMLFEEAKSK----GIELNVIVYSSLI 678
Query: 157 DSFCKHDSKRGFDDTYARLNQLV-----------NSSSSVYVKR----------QALKSM 195
D F K D+ Y L +++ NS VK Q++K M
Sbjct: 679 DGFGKVGR---IDEAYLILEEMMKKGLTPNVYTWNSLMDALVKAEEINEALICFQSMKEM 735
Query: 196 ------------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
I+GLC + + ++A +EM+ +GL P+ Y +I G ++G + D
Sbjct: 736 KCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLVPNVVTYTTMIAGLAKVGNITDA 795
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +++G D N ++ N ++ + G +V+ S+L++
Sbjct: 796 CSLFERFKANGGTPDAASFNALIEGMSHANRAIEAYHVFEETRLKGCRINVKACISLLDA 855
>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
lyrata]
Length = 977
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + G+ ++AE + EMR KG+ P F Y +I G+ +LG ++ I ++M G
Sbjct: 601 LMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAG 660
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + NM+L + E+ + L +M G P + TY ++++
Sbjct: 661 LTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDG 709
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 83/200 (41%), Gaps = 14/200 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLS---KLGSRERELVLFYCNLIDSFCKHD 163
F +P + I + K+G E+A+ L ++ G+R Y +LI+ F +
Sbjct: 346 FSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARA------YASLIEGFFREK 399
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ R Y L ++ ++ + + + G+C G A N+++EM G P+
Sbjct: 400 NVR---KGYELLVEI--KKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPN 454
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I + + D R++ +M G DT C N ++ ++ +L
Sbjct: 455 VVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLL 514
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M ++G TY + ++
Sbjct: 515 EMVENGFKPDAFTYGAFISG 534
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 82/182 (45%), Gaps = 9/182 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +AE + E K + + V Y LID F K + + + + Q
Sbjct: 605 LVKNGKVNDAEEIFHEMRGKGIAPD---VFSYGTLIDGFSKLGNMQKASSIFDEMVQ-AG 660
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+S+V + ++ G C G+ +A+ L++EM KG P+ Y II GY + G L
Sbjct: 661 LTSNVIIYNM----LLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDL 716
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ ++ ++M+ G D+ ++ N++ R + + + G S +N++
Sbjct: 717 AEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFET-NEKGCASSSAPFNAL 775
Query: 301 LN 302
+N
Sbjct: 776 IN 777
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y LI +F + K F D L ++ + S+I GL + +
Sbjct: 452 RPNVVIYTTLIKTFLQ---KSRFGDAVRVLKEM--REQGIAPDTFCYNSLIIGLSKAKKM 506
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA + + EM G +P F Y I GY G ++ V +M G + V +
Sbjct: 507 DEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGL 566
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ Y ++ + M + GI +TY ++N
Sbjct: 567 INEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNG 604
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+N+L++ S + K + MI LC+ G A+ L M+ L P+ Y ++
Sbjct: 792 INRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLN 851
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KD 287
GY ++G +M + +++ + G D + +++++++ ++ ++ L +M D
Sbjct: 852 GYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVD 911
Query: 288 SGIPFSVRTYNSVLNSCSTIMSM 310
G S+ T ++L+ + + M
Sbjct: 912 DGCKLSISTCRALLSGFAKVGEM 934
>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLS---KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
++A L +QG + A +L +S +L SR + Y L+ + C D A
Sbjct: 62 VLAALCRQGCLDAA-LFLLRVMSHEPRLASRPN--AISYTTLMRALCA-------DRRAA 111
Query: 174 RLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ L+ S V+ + ++I GLC+ A L+ EM G+EP+ Y C++
Sbjct: 112 QAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLL 171
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+GY + G E + ++ +M G D V ++ S H ++ + + M + G+
Sbjct: 172 HGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLE 231
Query: 292 FSVRTYNSVLNS 303
+V TYN ++NS
Sbjct: 232 PNVVTYNVLINS 243
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 34/188 (18%)
Query: 149 VLFYCNLIDSFCKHD------------SKRGFDDTYARLNQLVNSSSSVYVKRQAL---- 192
V+ Y LIDS C+H ++RG + N L+NS R+AL
Sbjct: 199 VVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRK 258
Query: 193 --------------KSMISGLCEMGQPHEAENLIEEMRVKG---LEPSGFEYKCIIYGYG 235
++I+GL + + EA L+EEM ++G + P + +I+G
Sbjct: 259 NMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEM-MQGETRVRPDLMTFNSVIHGLC 317
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
++G + ++ M +G R + V N+++ +++ + + + +M SG+
Sbjct: 318 KIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSF 377
Query: 296 TYNSVLNS 303
TY+ ++N
Sbjct: 378 TYSILING 385
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+ Y L+ + C D + +++ ++ Y +MI G + G+ AE
Sbjct: 412 VHYIPLLKAMCDQGMMGQARDLFNEMDRNCKLDAAAY------STMIHGAFKSGEKKIAE 465
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+++M +GL P Y I + + G L ER++ QM + G D + ++ Y
Sbjct: 466 EFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGY 525
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM---SMLQDLNSNDFPLS 322
G + +++ ++M + + ++++ S + +LQ L D +S
Sbjct: 526 GAKGDTEKILELTREMTAKDVALDPKIISTIVTSLGASIEGQKLLQSLPGFDTEIS 581
Score = 41.6 bits (96), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C+M Q AE+ + EMR +G+EP Y ++ G++ + N+M+ +
Sbjct: 382 LINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN- 440
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++D + ++ E +L+ M D G+ TY+ +N
Sbjct: 441 CKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPIN 488
>gi|341605703|gb|AEK82954.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605705|gb|AEK82955.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605709|gb|AEK82957.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605813|gb|AEK83009.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605815|gb|AEK83010.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605817|gb|AEK83011.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
gi|341605819|gb|AEK83012.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|108711050|gb|ABF98845.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215693326|dbj|BAG88708.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625789|gb|EEE59921.1| hypothetical protein OsJ_12549 [Oryza sativa Japonica Group]
Length = 554
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 76/156 (48%), Gaps = 5/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L++++C ++ F YA L+++ V + ++ L + G+ EA
Sbjct: 305 VVTYTSLVEAYCM---EKDFQTVYALLDEMRKRRCPPNVVTYTI--LMHALGKAGRTREA 359
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++++ G+ P Y +IY GR G LED +V +M + G + N ++S+
Sbjct: 360 LDTFDKLKEDGVAPDASFYNSLIYILGRAGRLEDAYSVVEEMRTTGIAPNVTTFNTLISA 419
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
DH++ + L KM++ ++TY +L C
Sbjct: 420 ACDHSQAENALKLLVKMEEQSCNPDIKTYTPLLKLC 455
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+ CK S + + L ++ + +++ G C+ EA + +EE
Sbjct: 242 LLDTLCKERSVKRARGVFQELR------GTIPPDENSFNTLVHGWCKARMLKEALDTMEE 295
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ G PS Y ++ Y + + ++++M + V +++ + G
Sbjct: 296 MKQHGFSPSVVTYTSLVEAYCMEKDFQTVYALLDEMRKRRCPPNVVTYTILMHALGKAGR 355
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ K+K+ G+ YNS++
Sbjct: 356 TREALDTFDKLKEDGVAPDASFYNSLI 382
>gi|116791998|gb|ABK26193.1| unknown [Picea sitchensis]
Length = 262
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ GL + + EA L M++ G P Y +I +L +E+ + +M+ G
Sbjct: 1 MLGGLFKGRKKDEALKLFGLMKINGPYPDSKSYTIVIRALSKLQKMEEASKFFAEMQEHG 60
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +D +++ YG+ +L + + LQ+MK+ GIP RTYN+++
Sbjct: 61 SPLDAAVYTCMITGYGNTKKLDKAYVLLQEMKEKGIPHDCRTYNALIK 108
>gi|413923869|gb|AFW63801.1| hypothetical protein ZEAMMB73_133996 [Zea mays]
Length = 485
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 14/198 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLG-----SRERELVLFYCNLID--SFCKHDSKRG-- 167
+IA +K+G EEA L ++KLG S L++ CN D +F + + R
Sbjct: 91 LIAAYNKEGLHEEASEL-YRIINKLGLTPSSSTFNYLIMGLCNQTDFIAFSAYINGRSRL 149
Query: 168 --FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
++ Y ++ +S + S+IS LC+ G EA L + MR GL P +
Sbjct: 150 DYVNEAYQAFAEM--TSRGIVPNNITYNSIISALCKAGNMTEAFKLEQNMRQSGLVPDIY 207
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+I G R G L+ ++ ++ M S+G DTV N ++++Y +++ + ++ KM
Sbjct: 208 TSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKM 267
Query: 286 KDSGIPFSVRTYNSVLNS 303
+G + TYN ++S
Sbjct: 268 LVAGCEPDIFTYNIWMHS 285
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 121/297 (40%), Gaps = 39/297 (13%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N+L H L R S A L MR N +I L K G+ +
Sbjct: 259 PNLVTYNSLLHGL----CRARRVSDALAL-MRDMTCRGCTPNVVTYGTLIDGLCKVGRVK 313
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A ++ + + K G+ + ++ Y LI+ CK D D++ A L + V S +
Sbjct: 314 DACAMLADMIDKGGTPD---LMIYNMLINGLCKADQ---VDESIALLRRAV--SGGIKPD 365
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
S+I GLC + EA L+ ++ +G P Y +I G + G +++ +
Sbjct: 366 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 425
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308
M DG D V + ++ + L L +M G P S TYNS++
Sbjct: 426 VMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG----- 480
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGM 365
L DLN D E + +V+E+E S+ A+ ++ + +HGM
Sbjct: 481 --LCDLNHLD--------------EAIELVEEMERSNCAPSAVTYN-----ILIHGM 516
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 13/194 (6%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172
L + +I L K G+ +EA L E ++ G V+ Y LID CK D+ +
Sbjct: 403 LYSTLIDGLCKAGKVDEAFDL-YEVMAGDGCDAD--VVTYSTLIDGLCKAGR---VDEAH 456
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
L ++V + S+I GLC++ EA L+EEM PS Y +I+
Sbjct: 457 LLLARMVRMGTPP--STMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 514
Query: 233 GYGRLGLLEDMERIVNQ-----MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
G R+ ++ ++ Q + + GT +DT+ + ++ ++ + + Q+M D
Sbjct: 515 GMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMID 574
Query: 288 SGIPFSVRTYNSVL 301
+G+ TY+ +L
Sbjct: 575 NGVIPDHITYSILL 588
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G C G+ +A+ +EMR K L P+ F +I G + D R M+
Sbjct: 14 ALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGS 73
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G DTV +LS L + + L +M+D G +V TYNS+++
Sbjct: 74 GIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 10/241 (4%)
Query: 63 KFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAF 120
K V SP + N L L R +L + R + + + +P ++ + +I
Sbjct: 141 KSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDG 200
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K + +A L LE++ G V+ Y L+D CK + L ++++
Sbjct: 201 LCKANRVSQAVEL-LESMKARGCSPD--VITYTILVDGLCKESKVAA---AWEVLREMLD 254
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ + S++ GLC + +A L+ +M +G P+ Y +I G ++G +
Sbjct: 255 AGCVPNL--VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 312
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+D ++ M G D + NM+++ +++ + L++ GI V TY+SV
Sbjct: 313 KDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSV 372
Query: 301 L 301
+
Sbjct: 373 I 373
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ES 252
S+I GLC+ +P A+ L E M+ PS Y ++ G R G LE + +M +
Sbjct: 119 SLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDR 178
Query: 253 DGTRVDTVCS------NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D CS ++++ N +S+ V L+ MK G V TY +++
Sbjct: 179 RSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDG 235
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 81/330 (24%), Positives = 132/330 (40%), Gaps = 45/330 (13%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N+L H L R S A L MR N +I L K G+ +
Sbjct: 181 PNLVTYNSLLHGLC----RARRVSDALAL-MRDMTCRGCTPNVVTYGTLIDGLCKVGRVK 235
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A ++ + + K G+ + ++ Y LI+ CK D D++ A L + V S +
Sbjct: 236 DACAMLADMIDKGGTPD---LMIYNMLINGLCKADQ---VDESIALLRRAV--SGGIKPD 287
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
S+I GLC + EA L+ ++ +G P Y +I G + G +++ +
Sbjct: 288 VVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYE 347
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308
M DG D V + ++ + L L +M G P S TYNS++
Sbjct: 348 VMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG----- 402
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGM-HL 367
L DLN D E + +V+E+E S+ A+ ++ + +HGM +
Sbjct: 403 --LCDLNHLD--------------EAIELVEEMERSNCAPSAVTYN-----ILIHGMCRM 441
Query: 368 GSAYFIILQWMDEMRNRFNNEKHVIPAEIT 397
L + EM + VIP IT
Sbjct: 442 ERVDSAALDYFQEMI-----DNGVIPDHIT 466
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 34/215 (15%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD------------S 164
++ L + G+ E A LE K+ R V+ Y LID CK +
Sbjct: 85 LVTGLCRAGKIETA----LEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMK 140
Query: 165 KRGFDD---TYARLNQLVNSSSSVYVKRQALKSMIS---------------GLCEMGQPH 206
RG TY L + S V + L+ M+ GLC +
Sbjct: 141 ARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVS 200
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L+ +M +G P+ Y +I G ++G ++D ++ M G D + NM++
Sbjct: 201 DALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLI 260
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ +++ + L++ GI V TY+SV+
Sbjct: 261 NGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVI 295
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ +P A+ L E M+ PS Y ++ G R G LE + +M D
Sbjct: 15 SLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEM-LD 73
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N++++ ++ + + +KM D P +V TY+ +++
Sbjct: 74 RRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSP-NVITYSVLIDG 122
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA+ ++E MR KG EP Y ++ G +G LED ++ + G
Sbjct: 1196 LIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N++++ Y ++ + ++M+ G+ S TYN+++ +
Sbjct: 1256 IKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGA 1304
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+D CK+ D + + + + + + ++ G+C G+ EA
Sbjct: 1333 YCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI-----EVFSILLDGMCRAGKLEEAWKQ 1387
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E+ GLEP Y +I G G+L + +++ QME G D++ N+++ +
Sbjct: 1388 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 1447
Query: 272 HNELSRMVLWLQKMKD 287
NE+ + L++M++
Sbjct: 1448 ENEIHEAIQLLEEMRN 1463
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +ID+ CK D ++ + + + S++ GLC G+ EA
Sbjct: 1085 VFTYGMIIDALCKDGMTTEALDMFSEM-----IGAGILPDVVVYSSLMDGLCRFGRLKEA 1139
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM +G+ + Y +I+G R GL +++ +N M G D +++
Sbjct: 1140 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 1199
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ L+ M+ G + TYN+++N
Sbjct: 1200 LCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNG 1234
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI + C+ R + + + ++K ++ GLC+ G EA +L
Sbjct: 1298 YNTLIGALCQSGRVRTAQKLFVEMQ-----TCGQFLKLSTYCVLLDGLCKNGHLEEAMDL 1352
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ ++ +P+ + ++ G R G LE+ + +++ +G DT+ N++++ +
Sbjct: 1353 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 1412
Query: 272 HNELSRMVLWLQKMKDSG-IPFSVRTYNSVL------NSCSTIMSMLQDLNSNDF 319
LS V L +M++ G +P S+ T+N ++ N + +L+++ + +F
Sbjct: 1413 KGMLSEAVKLLWQMEEKGCLPDSI-TFNVIIQNLLKENEIHEAIQLLEEMRNRNF 1466
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
II L K G EA + E + G+ V+ Y +L+D C+ ++ F +
Sbjct: 1091 IIDALCKDGMTTEALDMFSEMI---GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 1147
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R S+ VY S+I GL G E + M +G P F + +I
Sbjct: 1148 GR-----GISADVY----TYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILID 1198
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G + + ++I+ M G D + N +++ +L + + D GI
Sbjct: 1199 GLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 1258
Query: 293 SVRTYNSVLNS 303
+V +YN ++N
Sbjct: 1259 NVFSYNILING 1269
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC +GQ +A L E + +G++ + F Y +I GY + +++ R +M
Sbjct: 1230 TLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRFFEEMRPK 1289
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N ++ + + +M+ G + TY +L+
Sbjct: 1290 GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 1339
>gi|399107194|gb|AFP20361.1| At1g03560-like protein, partial [Capsella grandiflora]
gi|399107216|gb|AFP20372.1| At1g03560-like protein, partial [Capsella grandiflora]
Length = 212
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 11 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 67
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 68 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 122
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 123 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 182
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 183 KRMEEEEGCDQTVYTYTILISG 204
>gi|326504498|dbj|BAJ91081.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 793
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS+ + S++ +G + EN++ E++ G P + Y +IY YGR G ++
Sbjct: 627 GSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMK 686
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ R+ ++M+S G D V N+ + SY ++ + ++ M G + RTYNS+L
Sbjct: 687 EASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSIL 746
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+IS + G EA L EEM VKG++P Y +I G R G ++ ++M +
Sbjct: 324 SLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLISGLDRAGKIDAAIGTYDEMLRN 383
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N ++ +G + M+ ++ +G V T+N++L
Sbjct: 384 GCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFVPDVVTWNTLL 431
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 89/217 (41%), Gaps = 33/217 (15%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---------------- 160
+++ L + G+ E+AE L E + L R EL Y +L+ ++
Sbjct: 500 VLSALARGGRWEQAEKLFAE-MENLDCRPDELS--YSSLLHAYANAKKLDKMKALSEDIY 556
Query: 161 --KHDSKRGFDDTYARLNQLVNSSSSV------------YVKRQALKSMISGLCEMGQPH 206
K +S G T +N VN+ S + L +M+S +
Sbjct: 557 AEKIESHHGLVKTLVLVNSKVNNLSETEKAFLELGRRRCSLDINVLNAMVSVYGKNRMVK 616
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+ E ++ M+ + S Y +++ Y RLG E E I+ +++S G R D N ++
Sbjct: 617 KVEEILSLMKGSSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMI 676
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+YG ++ +MK SG+ + TYN + S
Sbjct: 677 YAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKS 713
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L++ M+ G+ + Y +I R L ++ ++ ++M + G D V N +L YG
Sbjct: 236 LVDSMKNDGIPLDRYTYNTLISCCRRGALYKEAAKVFDEMRAAGFEPDKVTFNSLLDVYG 295
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++M+ G P SV TYNS+++S
Sbjct: 296 KARMHDEAIGVLKEMELGGCPPSVVTYNSLISS 328
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 14/157 (8%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +++EM + G PS Y +I Y + GLL++ + +ME G + D + ++
Sbjct: 302 EAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVKGIQPDVITYTTLI 361
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFP 320
S ++ + +M +G ++ TYN+++ +M++ DL S F
Sbjct: 362 SGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSAGFV 421
Query: 321 LSILELTEVLN-------EEEVS-VVKELEDSSVLDE 349
++ +L + EVS V KE++ S + E
Sbjct: 422 PDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPE 458
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGL G+ A +EM G +P+ Y +I +G G +M + + + S
Sbjct: 359 TLISGLDRAGKIDAAIGTYDEMLRNGCKPNLCTYNALIKLHGVRGKFPEMMAVFDDLRSA 418
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D V N +L+ +G + S + ++MK SG TY S+++S S
Sbjct: 419 GFVPDVVTWNTLLAVFGQNGLDSEVSGVFKEMKKSGYVPERDTYVSLISSYS 470
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 4/135 (2%)
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH-EAENLIEEMRVKGLEPSGFEYK 228
D A ++ + N + + R ++IS C G + EA + +EMR G EP +
Sbjct: 232 DVVALVDSMKNDG--IPLDRYTYNTLIS-CCRRGALYKEAAKVFDEMRAAGFEPDKVTFN 288
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ YG+ + ++ ++ +ME G V N ++SSY L ++M+
Sbjct: 289 SLLDVYGKARMHDEAIGVLKEMELGGCPPSVVTYNSLISSYVKDGLLKEAAELKEEMEVK 348
Query: 289 GIPFSVRTYNSVLNS 303
GI V TY ++++
Sbjct: 349 GIQPDVITYTTLISG 363
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD-HNELSRMV 279
EP Y ++ + R D + +M ++G + V N+VL Y +V
Sbjct: 175 EPDASAYTALVSAFSRASRFRDAVAVFRRMVANGIQPAIVTYNVVLHVYSKIAVPWKDVV 234
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSC 304
+ MK+ GIP TYN++++ C
Sbjct: 235 ALVDSMKNDGIPLDRYTYNTLISCC 259
>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 988
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 57/107 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC++G +A L+++MR++G+ P Y II+ + GLL E + + M G
Sbjct: 493 LINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKG 552
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V +++ SY L + +M+D G+ +V TYN+++
Sbjct: 553 IHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALI 599
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 172 YARLNQLVNSSSSVYVKRQA--LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ R +L+ S + +K A +I G C+ EA +L EM +G P+ Y
Sbjct: 258 FDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNT 317
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I+Y RLG + D R ++ M ++ D V N ++ Y + +L +++
Sbjct: 318 IMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKN 377
Query: 290 IPFSVRTYNSVLN-SCST 306
+ SV TYN++++ C T
Sbjct: 378 LVPSVVTYNTLIDGGCRT 395
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 53/116 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A + I G ++G P +A + EEM+ +G P Y +I G +LG +D +V +M
Sbjct: 454 AYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKM 513
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D V ++ ++ L + M GI SV TY +++S +
Sbjct: 514 RLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAV 569
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C+MG A+ L +EM +GL+P Y I G +LG + +M+++G
Sbjct: 423 LVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEG 482
Query: 255 TRVDTVCSNMV------LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N++ L ++ D NEL +QKM+ GI TY S++++
Sbjct: 483 FPPDLITYNVLINGLCKLGNFDDANEL------VQKMRLEGIVPDHVTYTSIIHA 531
>gi|260780426|gb|ACX50759.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780428|gb|ACX50760.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780432|gb|ACX50762.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780434|gb|ACX50763.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780436|gb|ACX50764.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780438|gb|ACX50765.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780440|gb|ACX50766.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780442|gb|ACX50767.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780444|gb|ACX50768.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780446|gb|ACX50769.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780448|gb|ACX50770.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780450|gb|ACX50771.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780452|gb|ACX50772.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780454|gb|ACX50773.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780456|gb|ACX50774.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780458|gb|ACX50775.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780460|gb|ACX50776.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780462|gb|ACX50777.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780464|gb|ACX50778.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780466|gb|ACX50779.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780470|gb|ACX50781.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780472|gb|ACX50782.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780474|gb|ACX50783.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780476|gb|ACX50784.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780478|gb|ACX50785.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780480|gb|ACX50786.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780482|gb|ACX50787.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780486|gb|ACX50789.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780488|gb|ACX50790.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780490|gb|ACX50791.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780492|gb|ACX50792.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780494|gb|ACX50793.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780498|gb|ACX50795.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780500|gb|ACX50796.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780502|gb|ACX50797.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780504|gb|ACX50798.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ +D L+++++ V +++GLC+ G+ EA + + + GL
Sbjct: 66 GN---VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 12 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 71
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 72 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +I+ C + ++ +NQ+V+S ++I LC Q EA
Sbjct: 336 VYTYSTVINCLCNNGE---LEEAKGIVNQMVDSG--CLPDTTTFNTLIVALCTENQLEEA 390
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L E+ VKGL P+ + + +I ++G R+ +M+S G D V N+++ +
Sbjct: 391 LDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDN 450
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L++ + L++M+ SG P S TYN++++
Sbjct: 451 LCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I GLC+ + EAE + ++M V G+ + + +I G ++D +V+QM S
Sbjct: 480 NTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMIS 539
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G + + V N +L+ Y +S+ LQ M +G V TY +++N
Sbjct: 540 EGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLING 590
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 79/180 (43%), Gaps = 15/180 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y +ID CK +R ++ +Q+ + R A+ ++I GLC + +A
Sbjct: 479 YNTIIDGLCK---RRRIEEAEEVFDQM----DVTGIGRNAITFNTLIDGLCNAERIDDAA 531
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+++M +GL+P+ Y I+ Y + G + I+ M ++G VD V +++
Sbjct: 532 ELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGL 591
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEV 329
+ L+ M+ G+ + + YN V I S+ + N D E+TEV
Sbjct: 592 CKARRTQAALKLLRGMRMKGMKPTPKAYNPV------IQSLFRGNNGRDALSLFREMTEV 645
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 80/187 (42%), Gaps = 19/187 (10%)
Query: 155 LIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI++ CK H + R F++ SS +I LC G+ +A +
Sbjct: 412 LINALCKVGDPHLAVRLFEEM---------KSSGCTPDEVTYNILIDNLCSSGKLAKALD 462
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L++EM V G S Y II G + +E+ E + +QM+ G + + N ++
Sbjct: 463 LLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLC 522
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFPLSIL 324
+ + + +M G+ + TYNS+L + S +LQ + +N F + ++
Sbjct: 523 NAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVV 582
Query: 325 ELTEVLN 331
++N
Sbjct: 583 TYATLIN 589
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK D + Q + + R + ++GLC+ G A ++
Sbjct: 272 LINGYCKLGR---VGDALGYIQQEI--ADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGL 326
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G EP + Y +I G LE+ + IVNQM G DT N ++ + N+
Sbjct: 327 MLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQ 386
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ +V T+N ++N+
Sbjct: 387 LEEALDLARELTVKGLSPNVYTFNILINA 415
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ L++ F + S AR++++ S +SV V +I+G C++G+ +A
Sbjct: 234 FTTLMEGFVEEGSIEAALRLKARMSEMGCSPTSVTVN-----VLINGYCKLGRVGDALGY 288
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I++ G EP + + G + G ++ +++ M +G D + V++ +
Sbjct: 289 IQQEIADGFEPDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCN 348
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ EL + +M DSG T+N+++ + T
Sbjct: 349 NGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCT 383
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 7/151 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
LN + + R + +I L G + L+ EMR +G E + I Y
Sbjct: 76 LNSALARDDGLTPSRDVYEEIIRKLGTAGAFDLMKVLVGEMRREGHEVGLGLVQSFIGSY 135
Query: 235 GRLGLLED-MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
RL L +D + + NQ++ G + +T N +L+ + +++ + +M GI
Sbjct: 136 ARLQLFDDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPD 195
Query: 294 VRTYNSVLNS------CSTIMSMLQDLNSND 318
V T+N+V+++ T + ML++++S D
Sbjct: 196 VVTFNTVIDALCRARQARTAVLMLEEMSSCD 226
>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 140/328 (42%), Gaps = 47/328 (14%)
Query: 17 CCRLRQQRLTLV--QCLTARLTKQGQRFLSSLALAV---TRDSKAASRLISKF--VASSP 69
CCR R+ L LV C+ K Q S+L + R +A + L+ + + P
Sbjct: 167 CCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVP 226
Query: 70 QFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQR 127
+ + + L ++ +S A L+ + +E +P +VA +I K+G+
Sbjct: 227 NVFSYSIILKGLCDNS----MSQRALDLFQMMAKEGG-ACSPNVVAYNTVIHGFFKEGET 281
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HDSKRGFDDTYARL 175
+A +L E +++ G + V+ Y +ID+ CK + G
Sbjct: 282 GKACSLFHE-MTRQGVKPD--VVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTY 338
Query: 176 NQLVNSSSSVYVKRQALK------------------SMISGLCEMGQPHEAENLIEEMRV 217
N +++ +++ ++A K S ++ LC+ G+ EA + + M
Sbjct: 339 NCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTA 398
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
KG +P Y +++GY G DM + N M+S+G D N+++ +Y +
Sbjct: 399 KGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMVDD 458
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+L +M+ G+ V TY++V+++ S
Sbjct: 459 AMLIFTEMQQQGVSPDVVTYSTVISAFS 486
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 9/195 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + +A L K G+ +EA I ++++ G + ++ YC L+ + S+ F
Sbjct: 369 NIVICNSFLASLCKHGRSKEAAE-IFDSMTAKGHKPD--IVSYCTLLHGYA---SEGWFA 422
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D N + S+ + + +I + G +A + EM+ +G+ P Y
Sbjct: 423 DMIGLFNSM--KSNGIAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYST 480
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I + R+G L D NQM + G + +T + ++ + H L + + +M + G
Sbjct: 481 VISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKG 540
Query: 290 IPF-SVRTYNSVLNS 303
IP + +NSV+NS
Sbjct: 541 IPRPDIVFFNSVINS 555
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ +A I + ++ +G ER V+ + +LID +C D + L+
Sbjct: 552 VINSLCKDGRVMDAHD-IFDLVTDIG--ERPDVITFTSLIDGYCLVGK---MDKAFKILD 605
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V +++ G + G+ ++ L EM+ KG++P+ Y ++ G R
Sbjct: 606 AM--EVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFR 663
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + ++M GT V ++L +N ++ QK+ + FS+
Sbjct: 664 AGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITI 723
Query: 297 YNSVLNS 303
N+++N+
Sbjct: 724 LNTMINA 730
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 54/115 (46%), Gaps = 2/115 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++ GLC+ A +L + M +G P+ Y +I+G+ + G + ++M
Sbjct: 234 ILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHEMTR 293
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G + D V N+++ + + + L L++M +G TYN +++ +T+
Sbjct: 294 QGVKPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHGYATL 348
>gi|341605701|gb|AEK82953.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSXFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALXKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFD--DTYA 173
+I L K G+ E+A IL+ + LG + +C LI+ +C+ H+ R + D
Sbjct: 285 LIHGLCKFGKMEKAAE-ILKGMITLGCKPNSRT--FCLLIEGYCREHNMGRALELLDEME 341
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ N LV S+ S +MI+GLC A L+E+M GL+P+ Y +I G
Sbjct: 342 KRN-LVPSAVSY-------GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 393
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y G +E+ R+++ M G D C N ++S ++ +L +++ G+
Sbjct: 394 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 453
Query: 294 VRTYNSVL 301
T+ + +
Sbjct: 454 AVTFGAFI 461
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G+ +A L +EM +KG+ P+ F Y ++ G + G ++ ++ + M
Sbjct: 564 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 623
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G D+V + ++ Y ++ +M G+ YN++++ C M +
Sbjct: 624 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKA 683
Query: 314 LN 315
+N
Sbjct: 684 MN 685
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 17/193 (8%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKH-DSKRGFDD 170
+ I L K G+ +EA L+ S+L +E+ LV Y +LI FCK + ++ F+
Sbjct: 528 SAFIHGLLKNGRVQEA----LKVFSEL--KEKGLVPDVFTYSSLISGFCKQGEVEKAFEL 581
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ + + +Y +++ GLC+ G A L + M KGLEP Y +
Sbjct: 582 HDEMCLKGIAPNIFIY------NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTM 635
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I GY + + + + ++M S G + + N ++ ++ + + ++M G
Sbjct: 636 IDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGF 695
Query: 291 PFSVRTYNSVLNS 303
++ ++N++++
Sbjct: 696 ATTL-SFNTLIDG 707
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ ++I G C+ + EA L +EM K + P Y +I + + G +E+ + +M
Sbjct: 700 SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 759
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ VDTV ++ Y + S + +KM G+ TY V+
Sbjct: 760 QERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 810
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 68/157 (43%), Gaps = 17/157 (10%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQL 178
K+G E+A L E L K L + LID +CK ++ + F + A+
Sbjct: 676 KEGDMEKAMNLFREMLQK----GFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAK---- 727
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ ++I C+ G+ EA L +EM+ + L Y ++YGY +LG
Sbjct: 728 -----QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 782
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
++ + +M + G + D V +V+ ++ + L
Sbjct: 783 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 819
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q + I GL + G+ EA + E++ KGL P F Y +I G+ + G +E + ++
Sbjct: 525 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 584
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G + N ++ ++ R M + G+ TY+++++
Sbjct: 585 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 638
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ +GLC + +EA+ EEM+ GL+P +I G+ R G ++++ RI + M S G
Sbjct: 215 ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 274
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++ + N+++ ++ + L+ M G + RT+
Sbjct: 275 IPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 317
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C A L++EM + L PS Y +I G L +++ +M G
Sbjct: 320 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 379
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + V + ++ Y + L M SG+ + YN++++ S M
Sbjct: 380 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 435
>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
chloroplastic-like [Glycine max]
Length = 556
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 88/403 (21%), Positives = 161/403 (39%), Gaps = 73/403 (18%)
Query: 5 LHMRIPPPW----NSRCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRL 60
L MR PPP N ++ QR L+ L +G +T D + L
Sbjct: 61 LLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKG----------ITSDLVTLNIL 110
Query: 61 ISKFVASSPQFIALNALSHLLS----PDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE 116
I+ F ++ + L+ +L PD L++L L +R + +++ +VA
Sbjct: 111 INCFCHLGQITLSFSVLATILKRGYHPDVI--TLTTLIKGLCLRGEVKKALKFHDDVVA- 167
Query: 117 IIAFLDKQGQREEAETLILETLSKLGS-----------REREL---VLFYCNLIDSFCKH 162
L+ Q R TLI L K+G ER + V+ Y +IDS CK+
Sbjct: 168 ----LEFQLDRISYGTLI-NGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKN 222
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ Y+ +N + +Y ++I G C MG EA L+ EM++K + P
Sbjct: 223 KLVGEACNLYSEMN-----AKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINP 277
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ + +I G+ G ++ + ++ M + D V N ++ Y NE+
Sbjct: 278 DVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVF 337
Query: 283 QKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKEL 341
M SG+ V++Y +++ C T M +E +S+ +E+
Sbjct: 338 NSMAQSGVTPGVQSYTIMIDGLCKTKMV----------------------DEAISLFEEM 375
Query: 342 EDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNR 384
+ +V+ + ++S + G+ + +D+MR+R
Sbjct: 376 KHKNVIPNTITFNSL-----IDGLCKSGRIAYVWDLVDKMRDR 413
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LID+ CK+ D A +++ + + +I GLC+ G+ A
Sbjct: 419 VITYSSLIDALCKNCH---LDQAIALFKKMI--TQEIQPDMYTYTILIDGLCKGGRLKIA 473
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + + + +KG Y +I G+ + GL ++ ++++ME +G + + ++++ +
Sbjct: 474 QEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICA 533
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
+ +E + L++M G+
Sbjct: 534 LFEKDENDKAEKLLREMIARGL 555
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 112/252 (44%), Gaps = 22/252 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ + A+ ++L + K + + V+ Y +L+D + + + + +
Sbjct: 285 LIDALGKEGKMKAAK-IVLAVMMK--AYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMA 341
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q S V Q+ MI GLC+ EA +L EEM+ K + P+ + +I G +
Sbjct: 342 Q-----SGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCK 396
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + +V++M D + + ++ + + L + + +KM I + T
Sbjct: 397 SGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYT 456
Query: 297 YNSVLNS-C-----STIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELE 342
Y +++ C + Q L + L I T +++ +E ++++ ++E
Sbjct: 457 YTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAGLFDEALALLSKME 516
Query: 343 DSSVLDEAMKWD 354
D+ + A+ +D
Sbjct: 517 DNGCIPNAITFD 528
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSS 182
+G+ +EA L+ E +R V+ Y LID FCK+ ++ + ++ Q V+ +
Sbjct: 454 RGKLQEALNLLKEMEVSGCARN---VITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRN 510
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S Y ++I GLC+ + EA L+++M ++GL P F Y ++ + + G ++
Sbjct: 511 SVTY------NTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKK 564
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
IV M SDG D V +++ + L+ ++ GI + YN V+
Sbjct: 565 AADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQ 624
Query: 303 S 303
+
Sbjct: 625 A 625
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%)
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ + +++GL + G A +++ M +G +P + Y +I G +LG +++ +
Sbjct: 298 FPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVK 357
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++NQM +TV N ++S+ N++ + GI V TYNS++
Sbjct: 358 VLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLI 413
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ L K+ Q EEA L L L+ G V Y +LI C + + Y +
Sbjct: 377 IISTLCKENQVEEATKLAL-VLTGKGILPD--VCTYNSLIQGLCLSRNHTVAMELYKEM- 432
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ + +I LC G+ EA NL++EM V G + Y +I G+ +
Sbjct: 433 ----KTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCK 488
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ + E I +QME G ++V N ++ + + +M G+ T
Sbjct: 489 NKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFT 548
Query: 297 YNSVL 301
YNS+L
Sbjct: 549 YNSLL 553
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC A L +EM+ KG P F Y +I G L++ ++ +ME
Sbjct: 411 SLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVS 470
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + N ++ + + ++ +M+ G+ + TYN++++
Sbjct: 471 GCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520
>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Brachypodium distachyon]
Length = 571
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQME 251
+ISGLC+ GQ +A ++ +++R GL PS Y II GY GR G + ++ ++ +M
Sbjct: 191 VISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMV 250
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + V N++++ Y + + V ++MK GI SV TY++++
Sbjct: 251 EAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALV 300
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C+ G +AE I+ M K ++P+ Y ++ GY RL ++D + M
Sbjct: 331 LNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMS 390
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R + N +++ + + + + L +M+ G+ + TYN ++ +
Sbjct: 391 GKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGA 442
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 68/147 (46%), Gaps = 5/147 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L++ +CK + + + Q ++S V +++ GLC G+ E L++E
Sbjct: 264 LVNGYCKDSNTAAAVRVFEEMKQQGIAASVV-----TYSALVWGLCSEGKVEEGVKLVDE 318
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ GL P+ ++ G+ + G++ D E ++ ME + + V +++ Y ++
Sbjct: 319 MKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDK 378
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + M G+ + R YN ++
Sbjct: 379 MKDALAVKEAMSGKGVRPNARIYNCLI 405
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID +CK A L ++V + S +++G C+ A
Sbjct: 220 VVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISP--NEVTFNVLVNGYCKDSNTAAA 277
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ EEM+ +G+ S Y +++G G +E+ ++V++M+ G + N VL+
Sbjct: 278 VRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNG 337
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ W+ M+ + +V TY +++
Sbjct: 338 FCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDG 372
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G + + +A + E M KG+ P+ Y C+I G+ R G + ++++M G
Sbjct: 369 LVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKG 428
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R D V N+++ + E+ + V L +M G+ TYN+++N
Sbjct: 429 VRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIING 477
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM + GLEP Y II GY G ++ I +ME
Sbjct: 439 LIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGK 498
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R + V N+ + ++ L +M + G+ + TY+++
Sbjct: 499 KRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTI 544
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 62.8 bits (151), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 90/190 (47%), Gaps = 8/190 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L + G+ E A L LE + G + V Y LI +C+ S +T ++
Sbjct: 459 IINGLCQIGESERASGL-LEQMIADGLKPNAFV--YAPLISGYCREGSFSLACETLKKMT 515
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ N + +Y S+I GL +G+ EA +EM KG +P+ F Y +I+GY
Sbjct: 516 R-ENLTPDLY----CYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSM 570
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE E++++QM + G + +L Y + L ++ L+ M + G+ R
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRL 630
Query: 297 YNSVLNSCST 306
Y V+++ S+
Sbjct: 631 YGIVIHNLSS 640
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 5/156 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I+ CK D L+++ S + + ++I G G EA +
Sbjct: 316 YGAIINGLCKRGRP---DQAKCLLDEM--SCAGLMPNVVVYSTLIDGFMRQGNADEAFKI 370
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++EM G++P+ Y +I G +LG + RI+ QM G DT+ N+V+ +
Sbjct: 371 VKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLR 430
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ L L +M+ GI +V TY+ ++N I
Sbjct: 431 QHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQI 466
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 95/231 (41%), Gaps = 43/231 (18%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
II L K+G+ ++A+ L L+ +S G V+ Y LID F + + D+ +
Sbjct: 317 GAIINGLCKRGRPDQAKCL-LDEMSCAGLMPN--VVVYSTLIDGFMRQGNA---DEAFKI 370
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQ------------------------------ 204
+ ++ S++ V + ++I GLC++G+
Sbjct: 371 VKEM--SAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGH 428
Query: 205 -----PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
EA L+ EMR G+ P+ + Y II G ++G E ++ QM +DG + +
Sbjct: 429 LRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNA 488
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++S Y S L+KM + + YNS++ S + M
Sbjct: 489 FVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKM 539
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 87/203 (42%), Gaps = 15/203 (7%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH- 162
E + +L +I L G + A + +L + K G L+ Y +LI FCK
Sbjct: 621 EKGLMPDNRLYGIVIHNLSSSGHMQAAVS-VLSVIEKNGLVPDSLI--YGSLISGFCKAA 677
Query: 163 --DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
+ G D A+ + + S Y ++I G C+ A N+ + KGL
Sbjct: 678 DMEKAVGLLDEMAK--KGIEPGISCY------NALIDGFCKSDDISHARNIFNSIICKGL 729
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y +I GY + G + D + N+M ++G D +++ + + +L + +
Sbjct: 730 PPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALF 789
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
++M G + ++N++++
Sbjct: 790 ITEEMIARGYAI-ISSFNTLVHG 811
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 75/156 (48%), Gaps = 11/156 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+++CK R + + ++ + S+ V ++I GLC G EA
Sbjct: 243 VYTYSTLIEAYCK---VRDLESAKKVVEEMRETGCSLNV--VTYNTLIGGLCRAGAIEEA 297
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM GL P GF Y II G + G + + ++++M G + V + ++
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ G+ +E ++V ++M +G+ + TY++++
Sbjct: 358 FMRQGNADEAFKIV---KEMSAAGVQPNKITYDNLI 390
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ +A L++EM KG+EP Y +I G+ + + I N +
Sbjct: 668 SLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICK 727
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + V ++ Y ++ + +M G+ Y+ + CS + Q
Sbjct: 728 GLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQA 787
Query: 314 L 314
L
Sbjct: 788 L 788
>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
Length = 695
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 8/192 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + I+ L K G+ EA L+ + L S + V+ YC LID CK S
Sbjct: 479 NTVIYTTIMDALFKAGKESEAVALLHKILD---SGFQPNVVTYCALIDGLCKAGS---IS 532
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ + N++ V QA ++I G C++G ++A +L+ EM KG+ Y
Sbjct: 533 EAISHFNKMRELGLDPNV--QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTS 590
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I GY + L+D + +M G ++D C +S + + N + L +M +G
Sbjct: 591 LIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 650
Query: 290 IPFSVRTYNSVL 301
I YN ++
Sbjct: 651 ITPDKTVYNCLI 662
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 58/109 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA L M+ G P Y +I GYG+ G LE++E++V++M G
Sbjct: 206 VIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSG 265
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +++ + + + + +MK G+ +V T+++ +++
Sbjct: 266 CAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDA 314
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 11/212 (5%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+ + + L +I L K + +EA++L L ++ G R ++ Y ++D+ K
Sbjct: 437 KNKGMELDVSLYGTLIWGLCKDQKVDEAKSL-LHKMAGCGLRPNTVI--YTTIMDALFKA 493
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ + A L+++++S V ++I GLC+ G EA + +MR GL+P
Sbjct: 494 GKE---SEAVALLHKILDSGFQPNVVTYC--ALIDGLCKAGSISEAISHFNKMRELGLDP 548
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G+ ++G L ++N+M G +D V ++ Y L
Sbjct: 549 NVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALK 608
Query: 283 QKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQD 313
KM +SG+ + Y ++ C+ M+M+Q+
Sbjct: 609 TKMIESGLQLDLYCYTCFISGFCN--MNMMQE 638
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 129 EAETLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYAR 174
+A T +++ K+GS + + L Y +LID + K + D +A
Sbjct: 551 QAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMK---QANLQDAFAL 607
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+++ S + + ISG C M EA ++ EM G+ P Y C+I Y
Sbjct: 608 KTKMI--ESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKY 665
Query: 235 GRLGLLEDMERIVNQMES 252
+LG +E+ + N+MES
Sbjct: 666 QKLGNMEEASSLQNEMES 683
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +D+FCK + +A++ + S++ G C+ G+ +A
Sbjct: 305 VVTFSTFVDAFCKEGLVQEAMKLFAQMR-----VRGMMPNEFTYTSLVDGTCKAGRLDDA 359
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++EM +GL P+ Y ++ G + G + + + +++ ME G + + + ++
Sbjct: 360 IVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHG 419
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ +N R + L +MK+ G+ V Y +++
Sbjct: 420 HFMNNNSERALDLLNQMKNKGMELDVSLYGTLI 452
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 88/217 (40%), Gaps = 33/217 (15%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------ 164
+I FL K+G+ EA L + + +G V+ Y +LID + K
Sbjct: 206 VIDFLCKEGELVEARALFVR-MKAMGCSPD--VVTYNSLIDGYGKCGDLEEVEQLVSEMR 262
Query: 165 KRGFDDTYARLNQLVNSSSSV-----------YVKRQAL-------KSMISGLCEMGQPH 206
K G N L+N S +KRQ + + + C+ G
Sbjct: 263 KSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQ 322
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L +MRV+G+ P+ F Y ++ G + G L+D ++++M G + V +++
Sbjct: 323 EAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMV 382
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ L M+ G+ + Y ++++
Sbjct: 383 DGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHG 419
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 95/232 (40%), Gaps = 49/232 (21%)
Query: 113 LVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+VA ++ F K+G +EA L + + G E Y +L+D CK
Sbjct: 301 VVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVR-GMMPNEFT--YTSLVDGTCKAGR-- 355
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN---------------- 210
DD L+++V+ V + M+ GLC+ G+ EA+N
Sbjct: 356 -LDDAIVLLDEMVHQGLVPNVVTYTV--MVDGLCKEGKVAEADNVLSLMERGGVKANELL 412
Query: 211 -------------------LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L+ +M+ KG+E Y +I+G + +++ + ++++M
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R +TV ++ + + S V L K+ DSG +V TY ++++
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDG 524
>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
Length = 578
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK+ + + + Q ++S V S+ISGLC G+ E L+EE
Sbjct: 270 LINGYCKNSNTAAAVRVFEEMKQQGIAASVV-----TYNSLISGLCSEGKVEEGVKLMEE 324
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M GL P+ + C++ G+ + G++ D ++ M D V +++ Y +
Sbjct: 325 MEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGK 384
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + M GI +V TYN ++ S
Sbjct: 385 MEDAMAVKEAMAKKGISPNVTTYNCLITGFS 415
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 64/118 (54%), Gaps = 4/118 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVN 248
++ISGLC +GQ +A ++ ++++ GL PS Y +I GY G G + ++ ++
Sbjct: 194 FNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLK 253
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
+M G V ++++ Y ++ + V ++MK GI SV TYNS+++ CS
Sbjct: 254 EMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCS 311
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 87/189 (46%), Gaps = 12/189 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ L +G+ EE L +E + LG E+ F C ++ FCK A N
Sbjct: 305 LISGLCSEGKVEEGVKL-MEEMEDLGLSPNEIT-FGC-VLKGFCKKG-------MMADAN 354
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++ + V+ + +I G +G+ +A + E M KG+ P+ Y C+I G+
Sbjct: 355 DWIDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGF 414
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G ++++M+ G D V N+++ + E+ + V L +M + G+ +
Sbjct: 415 SRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNH 474
Query: 295 RTYNSVLNS 303
TYN+++
Sbjct: 475 LTYNTIIQG 483
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 194 SMISGLCEMGQP---HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
S+I G C+ G + + L++EM G+ P+ + +I GY + R+ +M
Sbjct: 231 SLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEM 290
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMS 309
+ G V N ++S ++ V +++M+D G+ + T+ VL C
Sbjct: 291 KQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKK--G 348
Query: 310 MLQDLNSNDFPLSILELTEVLNEEEVSV----------VKELEDSSVLDEAM 351
M+ D +ND+ I +TE E +V + + ++ED+ + EAM
Sbjct: 349 MMAD--ANDW---IDGMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAM 395
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 49/106 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A L++EM GLEP+ Y II G+ G ++ I +ME
Sbjct: 445 LIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCR 504
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R + V N+ + + ++ L +M D + + TY ++
Sbjct: 505 KRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETI 550
>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 548
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/246 (20%), Positives = 115/246 (46%), Gaps = 22/246 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ +A+ ++L + K + V+ Y +L+D +C + D + + +S
Sbjct: 283 KEGKVNDAK-VVLAIMMK--DDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSM-----AS 334
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q +M++G C++ EA NL EEMR + + P+ Y +I G +LG +
Sbjct: 335 GGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFY 394
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++V++M G + V + +L + ++ + + + L +KD GI + TY ++
Sbjct: 395 ALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIK 454
Query: 303 S-CST-----IMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLD 348
C + ++ +DL + L + T ++ ++ ++++ ++ED+ +
Sbjct: 455 GLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIP 514
Query: 349 EAMKWD 354
A ++
Sbjct: 515 NAKTYE 520
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L+ ++ +G+ P + Y +I G + G LED + + +
Sbjct: 416 SILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVK 475
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D +++ + D + + L KM+D+G + +TY V+
Sbjct: 476 GYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVI 523
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC++G+ A L++ + K ++P+ Y II + L+ D + +QM +
Sbjct: 171 TLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAK 230
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++S + ++L+ + KMK I +V T+N +++
Sbjct: 231 RICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDG 280
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 114/276 (41%), Gaps = 21/276 (7%)
Query: 36 TKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAF 95
T Q + LSSL A + + + F N L + S L+SL+F
Sbjct: 61 TFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFS----QLGLNSLSF 116
Query: 96 PLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFY 152
++ +I ++ + +P + +I L +G +A L K+ ++ L + Y
Sbjct: 117 SIFAKILKKGY---HPTAITFNTLIKGLCLKGHIHQA----LHFHDKVVAQGFHLDQVSY 169
Query: 153 CNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
LI+ CK R++ +LV ++ +Y +I +C+ ++A +L
Sbjct: 170 GTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMY------NMIIDNMCKAKLVNDAFDL 223
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M K + P F Y +I G+ + L + N+M+ + + N+++ +
Sbjct: 224 YSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCK 283
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++ + L M I V TYNS+++ +I
Sbjct: 284 EGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSI 319
>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
Length = 512
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 6/156 (3%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y LI+ CK ++ +RG L + + S S S+ISG C+ G+ E
Sbjct: 213 VVTYNTLINGLCKANEVQRG-----CELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKE 267
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A NL EEM G++P+ + +I G+G++G + + E + +M D V ++
Sbjct: 268 ASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLID 327
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +++ + + MK + +V TY ++N+
Sbjct: 328 GYCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINA 363
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 8/133 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI++ CK + ++ L Q+ NSS + K +I G C+ G E
Sbjct: 354 VYTYAVLINALCKENR---LNEARDFLGQIKNSS--IIPKPFMYNPVIDGFCKAGNVDEG 408
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++EM K +P + +I G+ G + + I N+M + D + N ++S
Sbjct: 409 NVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISC 468
Query: 269 Y---GDHNELSRM 278
G NE R+
Sbjct: 469 LLKAGMPNEAYRI 481
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++S L + Q HEA L +E V P + + +I G R+G ++ + MES
Sbjct: 148 NLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESF 207
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
G D V N +++ NE+ R ++++ S + TY S+++
Sbjct: 208 GCLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISG 258
>gi|168000535|ref|XP_001752971.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695670|gb|EDQ82012.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 391
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 15/189 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSK 165
NPK A++I+F + Q + A L E + K G ++ + + LI S+ + H +
Sbjct: 15 NPKEYAKMISFAGRISQPQLAADLFDE-MEKRGIKK--TAVSFNALIHSYGRNNEAHKAL 71
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ F+D A N V L SM S MG E + L + + G P
Sbjct: 72 QLFEDMKA-----TNDCQPTLVTYNTLISMYS---RMGATEEMKKLFLDCKEAGFSPDRH 123
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+GY R G L ME N++++ + D + N + Y N +++M M
Sbjct: 124 TYNALIWGYMRAGQLSQMEETFNELQAGECKADVITYNAQIIGYARANAVNKMEAVFSSM 183
Query: 286 KDSGIPFSV 294
+ +GIP +
Sbjct: 184 QAAGIPINA 192
>gi|297743170|emb|CBI36037.3| unnamed protein product [Vitis vinifera]
Length = 646
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 110/235 (46%), Gaps = 13/235 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW-NPKLVAEIIAFLDKQGQ 126
+P IA N + L+ + R+ L+ ++ E ++ N + A ++ L K G
Sbjct: 327 TPNLIAYNTMIQALANN----RMVDKTIFLFSKMVVEVSNKFMNKSIYAYLVRTLSKLGH 382
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186
EA L S +R+ Y ++++S C D +++++ S+ +V
Sbjct: 383 ASEAHRLFCNMWSFHDEGDRDA---YMSMLESLCDAGKTTEALDLLSKIHEKRISTDTV- 438
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+++S L ++ + + +L E+M+ G P F Y +I +GR G +E+ +I
Sbjct: 439 ----MYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNILISSFGRAGRVEEAVKI 494
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++E+ + D + N +++ G + ++ + ++M++ G+ V TY++++
Sbjct: 495 FEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLI 549
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S+I+ L + G EA +EMR +GL P Y +I +G+ +E R+ ++M
Sbjct: 509 SFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 568
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++G + V N++L + V K+K G+ TY
Sbjct: 569 LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 615
>gi|260780468|gb|ACX50780.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780484|gb|ACX50788.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 199
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 9/196 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKRIQVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ +D L+++++ V +++GLC+ G+ EA + + + GL
Sbjct: 66 GN---VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLF 180
Query: 283 QKM-KDSGIPFSVRTY 297
++M ++ G +V TY
Sbjct: 181 KRMEEEEGCDQTVYTY 196
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 63/119 (52%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 13 IQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDAI 72
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 73 RLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
Length = 455
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 91/208 (43%), Gaps = 18/208 (8%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
E+ E L E L+ +G ++F+ ++ + CK + +LV+S + V
Sbjct: 117 EKVEELFFEMLN-VGIHPN--IVFFNTILCNLCK-------EGRVMEGQRLVDSIECMGV 166
Query: 188 KRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ + ++I G C G EA L+E M GL+P+ F Y +++GY + G ++
Sbjct: 167 RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYS 226
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C 304
+ +M S+G V N +L S M +SG + + TYN++LN C
Sbjct: 227 LFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLC 286
Query: 305 ST-----IMSMLQDLNSNDFPLSILELT 327
+ M Q L S L+I+ T
Sbjct: 287 KSNCVDEAFKMFQSLCSKGLQLNIITFT 314
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID+ CK DD + NQ++N + + S++ GLC + + + E L
Sbjct: 68 YGALIDALCKLGR---VDDAEVKFNQMINEGVTPNI--VVFSSLVYGLCSIDKWEKVEEL 122
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-- 269
EM G+ P+ + I+ + G + + +R+V+ +E G R D + N ++ +
Sbjct: 123 FFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCL 182
Query: 270 -GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +E S++ L+ M G+ + +YN++L+
Sbjct: 183 AGTIDEASKL---LEGMVSVGLKPNSFSYNTLLHG 214
>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
Length = 707
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQME 251
+++GLC+ G+ +AE +++ + GL P Y I+ GY ++G DM+R + QME
Sbjct: 248 LLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIG---DMDRAILTIEQME 304
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S G R + + N V+ + + + + W++KM GI SV TYN +++
Sbjct: 305 SRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDG 356
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 93/194 (47%), Gaps = 8/194 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K+G+ E+AE +L++L + G E++ Y +++ +C+ D + Q+
Sbjct: 252 LCKEGKVEKAEE-VLKSLVEHGLVPGEVI--YNTIVNGYCQIGD---MDRAILTIEQM-- 303
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + A S+I CEM +AE +++M KG+ PS Y +I GYGRL +
Sbjct: 304 ESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVF 363
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+I+ +ME +G + + + +++ ++ + L+ M G+ + YN +
Sbjct: 364 SRCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNML 423
Query: 301 LNSCSTIMSMLQDL 314
++ T+ + + L
Sbjct: 424 IDGSCTVGKLREAL 437
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 84/174 (48%), Gaps = 11/174 (6%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR--LNQLVNSSSSVYVKRQA 191
ILE + + G E+ V+ Y +LI+ CK D K + R + + V ++++Y
Sbjct: 369 ILEEMEENG--EKPNVISYGSLINCLCK-DGKILEAEMVLRDMVGRGVLPNANIY----- 420
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I G C +G+ EA +EM G+ + Y +I G ++G L++ E + +
Sbjct: 421 -NMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLIT 479
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
S G D + N ++S Y + + + + MK G+ ++ T++ +++ CS
Sbjct: 480 STGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCS 533
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 67/160 (41%), Gaps = 12/160 (7%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LID +CK G D L + + V S++SGLC+ + EA ++ E
Sbjct: 142 LIDGYCKA----GEVDVAIGLRERM-KKEKVEPSIITFNSLLSGLCKARRIEEARCMLNE 196
Query: 215 MRVKGLEPSGFEYKCIIYGYGR----LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ G P GF Y I G + G D+ R + G ++D +++L+
Sbjct: 197 IKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYR---EAIGKGVKIDNYTCSILLNGLC 253
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++ + L+ + + G+ YN+++N I M
Sbjct: 254 KEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDM 293
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA K G E+A L E ++K + V+ + LID CK D +
Sbjct: 573 LIAGACKAGNFEQASALFEEMVAK---NLQPDVMTFGALIDGLCKAGQVEAARDILDLMG 629
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L + V +++ GLC+ G+ EA +EEM G P Y ++Y R
Sbjct: 630 NLGVPPNVV-----TYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCR 684
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+D ++V++++S G DTV N+++ + + + L++M G V T
Sbjct: 685 ASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVT 744
Query: 297 YNSVLNS 303
YN++++S
Sbjct: 745 YNTLIDS 751
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 54/248 (21%)
Query: 101 ITEESWFQWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
++E F W+P V ++ L K GQ E+A T++ E + G V+ Y LIDS
Sbjct: 695 VSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMV---GKGHHPDVVTYNTLIDS 751
Query: 159 FCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
CK +++R D +R+++ + Y +I+GLC++G+ EA LI+E
Sbjct: 752 LCKAGDLEEARRLHGDMSSRVSRCCVPNVVTY------SVLINGLCKVGRIDEARELIQE 805
Query: 215 MRVKGLE---------------------------------------PSGFEYKCIIYGYG 235
M K + P + +I G
Sbjct: 806 MMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLC 865
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G ++ + + M + G + V N++++ +++ R ++ M D G+ V
Sbjct: 866 KCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVI 925
Query: 296 TYNSVLNS 303
TY+ ++++
Sbjct: 926 TYSVLVDA 933
Score = 45.4 bits (106), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+D+FCK D+ L+ + + + V S+I GLC+ Q EA
Sbjct: 924 VITYSVLVDAFCKASH---VDEALELLHGMASRGCTPNV--VTFNSIIDGLCKSDQSGEA 978
Query: 209 ENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
+ ++M +K GL P Y +I G R G E +++ M T C N LS
Sbjct: 979 FQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPDPDTYAFNCCING-LS 1037
Query: 268 SYGDHNELSRMVLWLQKMKD 287
GD + +L L+ + D
Sbjct: 1038 KLGDVSRALHRMLELELVPD 1057
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+D+FCK D+ L+ + + + V S+I GLC+ + EA
Sbjct: 430 VITYSVLVDAFCKASR---VDEALELLHGMASRGCTPNV--VTFNSIIDGLCKSDRSGEA 484
Query: 209 ENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
+ ++M +K GL P Y +I G R G E +++ M T C N LS
Sbjct: 485 FQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCING-LS 543
Query: 268 SYGD 271
GD
Sbjct: 544 KLGD 547
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 79/189 (41%), Gaps = 8/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G EEA L + S+ V+ Y LI+ CK D+ +
Sbjct: 257 LIDSLCKAGDLEEARRLHGDMSSRSCVPN---VVTYSVLINGLCKVGR---IDEARELIQ 310
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL--EPSGFEYKCIIYGY 234
++ S V S + GLC+ EA L+ +R L P + +I G
Sbjct: 311 EMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGL 370
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G +++ + + M + G + + N +++ +++ R ++ M D G+ V
Sbjct: 371 CKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDV 430
Query: 295 RTYNSVLNS 303
TY+ ++++
Sbjct: 431 ITYSVLVDA 439
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 66/159 (41%), Gaps = 9/159 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LIDS CK D AR SS S +I+GLC++G+ EA
Sbjct: 251 VVTYNTLIDSLCKAG-----DLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEA 305
Query: 209 ENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV--DTVCSNM 264
LI+EM K + P+ Y + G + + + ++ + RV DTV +
Sbjct: 306 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 365
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ ++ M G +V TYN+++N
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNG 404
>gi|224120112|ref|XP_002331139.1| predicted protein [Populus trichocarpa]
gi|222872867|gb|EEF09998.1| predicted protein [Populus trichocarpa]
Length = 329
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ +TE+ N +I + K G+ E AE L+ E ++ G +L+ Y
Sbjct: 55 AFALFDELTEKGLVA-NVHTYGALIDGVCKAGEMEAAEILVNEMQTR-GLDVNQLI--YN 110
Query: 154 NLIDSFCKHD------------SKRGFDDTYARLNQLVNSSSSVYVKRQALK-------- 193
LID +CK K+GF++ LN + + + +A +
Sbjct: 111 TLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEK 170
Query: 194 ----------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++I C+ G EA+ L +EM+ G EP+ Y +I G+ + G +++
Sbjct: 171 GVVPNVVSYTTLIDIYCKEGNFVEAKKLFQEMKKAGGEPNAVTYNVLIDGHSKKGRMKEA 230
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++M + G D +L +L V +++ G+P +V TY ++++
Sbjct: 231 YELRDEMRAKGIFPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISG 290
Query: 304 CS 305
S
Sbjct: 291 LS 292
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 87/203 (42%), Gaps = 8/203 (3%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
I E+ F+ + + I L K Q EEA+ +L + K G V+ Y LID +C
Sbjct: 131 IMEKKGFENDIYTLNTIADGLRKLNQPEEAKRWLLTMIEK-GVVPN--VVSYTTLIDIYC 187
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
K + + + + ++V +I G + G+ EA L +EMR KG+
Sbjct: 188 KEGNFVEAKKLFQEMKKAGGEPNAV-----TYNVLIDGHSKKGRMKEAYELRDEMRAKGI 242
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P + Y +++G G L+D + N++ G ++ V ++S
Sbjct: 243 FPDIYTYTSLLHGECIFGKLDDAVELFNEVRQKGLPLNVVTYTAIISGLSKEGRSEEAFK 302
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
+M ++G+ R Y S+++S
Sbjct: 303 LYDEMTEAGLTPDDRVYTSLVSS 325
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%)
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C++G A L +E+ KGL + Y +I G + G +E E +VN+M++ G V+
Sbjct: 47 CKIGNTKRAFALFDELTEKGLVANVHTYGALIDGVCKAGEMEAAEILVNEMQTRGLDVNQ 106
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N ++ Y + M+ G + T N++ +
Sbjct: 107 LIYNTLIDGYCKRGLIDEAFKVQVIMEKKGFENDIYTLNTIADG 150
>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 724
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 14/180 (7%)
Query: 134 ILETLSKLGSRERELVLFY----------CNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
++ L K+G + LFY LI F H DD A L+ +V +S
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGR---LDDAKAVLSDMV-TSY 377
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ S+I G + G A ++ +MR KG +P+ + Y ++ G+ +LG +++
Sbjct: 378 GIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEA 437
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++N+M +DG + +TV N ++S++ + + V ++M G V T+NS+++
Sbjct: 438 YNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 497
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C++G+ EA NL+ EM GL+P+ + C+I + + + + I +M G
Sbjct: 424 LVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 483
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D N ++S + +E+ + L+ M G+ + TYN+++N+
Sbjct: 484 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC G+ +A +L E+M GL PS +I G R G++E+ +M
Sbjct: 563 SLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLR 622
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G+ D V N +++ + + +K++ GIP TYN++++
Sbjct: 623 GSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMS 671
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 82/173 (47%), Gaps = 9/173 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +EA L+ E +S G + V F C LI +FCK + + + +
Sbjct: 430 KLGKIDEAYNLLNE-MSADGLKPNT-VGFNC-LISAFCKEHRIPEAVEIFREMPR-KGCK 485
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
VY S+ISGLCE+ + A L+ +M +G+ + Y +I + R G +++
Sbjct: 486 PDVY----TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 541
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSV 294
++VN+M G+ +D + N ++ E+ + +KM +D +P S+
Sbjct: 542 ARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSI 594
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 119/286 (41%), Gaps = 37/286 (12%)
Query: 31 LTARLTKQGQRFLSSLALAVTRDSKAA------SRLI---SKFVASSPQFIALNALSHLL 81
L ++ +G F SL +++ RD A +RL+ + P F + N + +L
Sbjct: 127 LLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 186
Query: 82 SPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL 141
H +++ + + R + F + +V + + +++ ++ +L ++K
Sbjct: 187 VSGNCHKVAANVFYDMLSRKIPPTLFTFG--VVMKALCAVNEV----DSALSVLRDMTKH 240
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV-----KRQALKSMI 196
G ++ Y LI S K + R+N+ + +++ + +I
Sbjct: 241 GCVPNSVI--YQTLIHSLSKCN----------RVNEALQLLEEMFLMGCVPDAETFNDVI 288
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
GLC+ + +EA ++ M ++G P Y ++ G ++G ++ + + ++ +
Sbjct: 289 LGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP----K 344
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS-GIPFSVRTYNSVL 301
+V N ++ + H L L M S GI V TYNS++
Sbjct: 345 PTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 390
>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Vitis vinifera]
Length = 609
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 104 ESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK 161
++W ++P ++ II K G+ +A+ L+ E ++K R + + LID FC+
Sbjct: 256 KAW-GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK---RIHPNEITFNILIDGFCR 311
Query: 162 HDSKRGFDDTYARLNQLVNSSSSVY--VKRQALK-------SMISGLCEMGQPHEAENLI 212
++ V ++ V+ ++RQ L+ S+I+GLC G+ EA L
Sbjct: 312 DEN--------------VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M GL+P+ Y +I G+ + +L++ +++ + G + + N ++ +YG
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ L M D+G+ +V TYN ++
Sbjct: 418 GRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHD 163
SW N +V ++ K G+ + L LE + G L CN ++ S K
Sbjct: 153 SWGCANSIIVDMLVWAYVKNGEMD----LALEGFDRAGDYGFRLSALSCNPMLVSLVKEG 208
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ Y + + + V +I+GLC++G+ +A +++E+M+ G PS
Sbjct: 209 RIGVVESVYKEMIR-----RRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y II GY + G + + ++ +M + + + N+++ + ++ +
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323
Query: 284 KMKDSGIPFSVRTYNSVLNS-CST 306
+M+ G+ +V TYNS++N CS
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSN 347
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTY 172
+I L G+ +EA L + +S +G + V+ Y LI+ FCK +++ DD
Sbjct: 340 LINGLCSNGKLDEALGL-QDKMSGMGLKPN--VVTYNALINGFCKKKMLKEAREMLDDIG 396
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R + ++I + G+ +A L M G+ P+ Y C+I
Sbjct: 397 KR---------GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV 447
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ R G +++ ++ +ME +G + D V N+++ + E + V L +M + G+
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLNP 507
Query: 293 SVRTYNSVLNS 303
S TYN++++
Sbjct: 508 SHLTYNALIDG 518
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G+ +A+ L++EM K + P+ + +I G+ R + +++ +M+
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIM---- 308
G + + V N +++ + +L + KM G+ +V TYN+++N C M
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388
Query: 309 -SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
ML D+ +++ ++ + ++D+ +L +M D+G
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLI--DAYGKAGRMDDAFLL-RSMMLDTG 434
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC+ G+ +A L++EM GL PS Y +I GY R G + ME G
Sbjct: 480 LVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKG 539
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
R + V N+++ + + +L L +M + G+ + TY+
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYD 583
>gi|15225722|ref|NP_180822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75160493|sp|Q8S8P6.1|PP180_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g32630
gi|20197234|gb|AAM14987.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330253613|gb|AEC08707.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 624
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 123 KQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFC-KHDSKRGFDDTYARLNQL 178
K G+ +AE L E RER + V Y +LI C K + KR F +
Sbjct: 306 KNGKMSDAEKLFDEM------RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
++ SS Y ++I G+C++G+ AE L+ EM+ KG+ + + +I GY R G
Sbjct: 360 LSPSSYTY------GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++++ I + ME G + D N + S + WL +M + G+ S +Y
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYT 473
Query: 299 SVLN 302
++++
Sbjct: 474 NLID 477
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V + +L ++ GLC G+ +++ LI+E VKG++P + Y II Y +
Sbjct: 218 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSG 277
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+E ++ M+ DG + V +++ + ++S +M++ GI V Y S+++
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLIS 337
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
++G +EA ++I + + + G + +F CN I S C + KR +D+ L +++
Sbjct: 411 RKGMVDEA-SMIYDVMEQKGFQAD---VFTCNTIAS-CFNRLKR-YDEAKQWLFRMM--E 462
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + + ++I C+ G EA+ L EM KG++P+ Y +IY Y + G +++
Sbjct: 463 GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 243 MERIVNQMESDGTRVDT 259
++ ME++G D+
Sbjct: 523 ARKLRANMEANGMDPDS 539
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y NLID +CK ++KR F + SS V MI C+ G+ E
Sbjct: 472 YTNLIDVYCKEGNVEEAKRLFVEM---------SSKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L M G++P + Y +I+G +++ R+ ++M G ++V +++S
Sbjct: 523 ARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMIS 582
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +MK G + Y +++ S
Sbjct: 583 GLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK + +N++ S V + + ++I G C G EA +
Sbjct: 367 YGALIDGVCKVGEMGAAE---ILMNEM--QSKGVNITQVVFNTLIDGYCRKGMVDEASMI 421
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG + F I + RL ++ ++ + +M G ++ TV ++ Y
Sbjct: 422 YDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCK 481
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ +M G+ + TYN ++
Sbjct: 482 EGNVEEAKRLFVEMSSKGVQPNAITYNVMI 511
>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
Length = 577
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 101/209 (48%), Gaps = 29/209 (13%)
Query: 104 ESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK 161
++W ++P ++ II K G+ +A+ L+ E ++K R + + LID FC+
Sbjct: 256 KAW-GFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAK---RIHPNEITFNILIDGFCR 311
Query: 162 HDSKRGFDDTYARLNQLVNSSSSVY--VKRQALK-------SMISGLCEMGQPHEAENLI 212
++ V ++ V+ ++RQ L+ S+I+GLC G+ EA L
Sbjct: 312 DEN--------------VTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQ 357
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M GL+P+ Y +I G+ + +L++ +++ + G + + N ++ +YG
Sbjct: 358 DKMSGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKA 417
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ L M D+G+ +V TYN ++
Sbjct: 418 GRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 11/204 (5%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHD 163
SW N +V ++ K G+ + L LE + G L CN ++ S K
Sbjct: 153 SWGCANSIIVDMLVWAYVKNGEMD----LALEGFDRAGDYGFRLSALSCNPMLVSLVKEG 208
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ Y + + + V +I+GLC++G+ +A +++E+M+ G PS
Sbjct: 209 RIGVVESVYKEMIR-----RRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPS 263
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y II GY + G + + ++ +M + + + N+++ + ++ +
Sbjct: 264 VITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFE 323
Query: 284 KMKDSGIPFSVRTYNSVLNS-CST 306
+M+ G+ +V TYNS++N CS
Sbjct: 324 EMQRQGLQPNVVTYNSLINGLCSN 347
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 81/169 (47%), Gaps = 9/169 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G+ +A+ L++EM K + P+ + +I G+ R + +++ +M+
Sbjct: 269 TIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQRQ 328
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIM---- 308
G + + V N +++ + +L + KM G+ +V TYN+++N C M
Sbjct: 329 GLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEA 388
Query: 309 -SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
ML D+ +++ ++ + ++D+ +L +M D+G
Sbjct: 389 REMLDDIGKRGLAPNVITFNTLI--DAYGKAGRMDDAFLL-RSMMLDTG 434
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 86/192 (44%), Gaps = 19/192 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTY 172
+I L G+ +EA L + +S +G + V+ Y LI+ FCK +++ DD
Sbjct: 340 LINGLCSNGKLDEALGL-QDKMSGMGLKPN--VVTYNALINGFCKKKMLKEAREMLDDIG 396
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R + ++I + G+ +A L M G+ P+ Y C+I
Sbjct: 397 KR---------GLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIV 447
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK---MKDSG 289
G+ R G +++ ++ +ME +G + D V N+++ + E + V L + M+ G
Sbjct: 448 GFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKG 507
Query: 290 IPFSVRTYNSVL 301
++ TYN ++
Sbjct: 508 RRANIVTYNVLI 519
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
Q QR E + ++ G V Y LI C+ D+ LN++++
Sbjct: 64 QAQRFEEARSVFRGMAAQGCSPN--VFSYSILIAGLCRGQK---VDEAAELLNEMIDGGH 118
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S++SGLC+MG+ EA +L M +G P G Y +I G+ + G + +
Sbjct: 119 QPNVVTYG--SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R+ +M G N +LS + E R+ + M G ++ T+N++L+
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236
Query: 304 CSTIMSMLQ 312
+ M++
Sbjct: 237 FCKMGDMVE 245
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 50/111 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++ G C+MG EA L EMR G P Y +I G G + +R++ +M
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMI 289
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D V N+++ Y L + ++ SG+ +Y+++++
Sbjct: 290 RSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 15/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA L + + +EA L+ E + G + +V Y +L+ CK + D ++R+
Sbjct: 93 LIAGLCRGQKVDEAAELLNEMID--GGHQPNVVT-YGSLLSGLCKMGKLKEAVDLFSRMV 149
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
V +I G + G EA L EEM KG P+ F Y ++ G+ R
Sbjct: 150 YRGCPPDGV-----VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G ++ + M G + N +L + GD E R+ L +M+ G P
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFL---EMRSLGCPPD 261
Query: 294 VRTYNSVLNS-CS 305
V +YN+++ CS
Sbjct: 262 VVSYNTLIRGMCS 274
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 169 DDTYARLNQLVNSSS--SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D Y N ++ + + Y L+S LC+ + EA ++ M +G P+ F
Sbjct: 34 DHVYGTYNDMLAAGCVPNTYTYGYLLRS----LCQAQRFEEARSVFRGMAAQGCSPNVFS 89
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I G R +++ ++N+M G + + V +LS +L V +M
Sbjct: 90 YSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV 149
Query: 287 DSGIPFSVRTYNSVLNSCS 305
G P YN +++ S
Sbjct: 150 YRGCPPDGVVYNVLIDGFS 168
>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
Length = 751
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 100 RITEESWFQWNPKLVAEIIAFLDKQ---GQREEAETLILETLSKLGSRERELVLFYCNLI 156
RI +E P + A L+ G+ EEA L+ K S + V+ Y +I
Sbjct: 399 RIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD---VVSYSTII 455
Query: 157 DSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
FC++ R F + + V+ + Y S+I GLCE + +EA +L +EM
Sbjct: 456 AGFCRYQELDRAFQMNAEMVEKGVSPDAITY------SSLIQGLCEQRRLNEACDLFQEM 509
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH--- 272
K L P F Y +I GY + G L + + ++M G DTV N++++
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQART 569
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E R++L L D IP + TY++++ SCS I
Sbjct: 570 REAKRLLLKL--FYDESIPNGI-TYDTLIESCSDI 601
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C++ + EA L+ M ++GLEP+ Y +I G R+G +E+ ++ +M+
Sbjct: 243 TVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRK 302
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +++ Y + ++ +M +G+P V TY S++N+
Sbjct: 303 GFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQAL------------------KSMISGLCEMGQPH 206
++GF N LVN V QAL S+I+ +C+ G +
Sbjct: 301 RKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLN 360
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A ++M V+GL P+G Y +I G+ + G +++ RI ++M G V N +L
Sbjct: 361 RAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALL 420
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + + L+ M+ G+ V +Y++++
Sbjct: 421 NGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTII 455
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 81/175 (46%), Gaps = 14/175 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC +G+ E ++ EM KG P G Y ++ GY ++G + ++M +G
Sbjct: 279 VINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNG 338
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ-- 312
D V ++++ L+R + + +M G+ + TY S++N S M +
Sbjct: 339 LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAY 398
Query: 313 ----DLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
++ + FP +I+ +LN EE + +++ +E + + + + +
Sbjct: 399 RIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 86/202 (42%), Gaps = 21/202 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGF-DDTYARLN 176
T ++ T+ K G+ R + F Y +LI+ F S++GF D+ Y +
Sbjct: 347 TSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGF----SQKGFMDEAYRIWD 402
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ S + ++++G C G+ EA L+ M KGL P Y II G+ R
Sbjct: 403 EMIRSGFPPTI--VTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
L+ ++ +M G D + + ++ + L+ Q+M + + T
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFT 520
Query: 297 YNSVLNSCSTIMSMLQDLNSND 318
Y S++N + + LN +D
Sbjct: 521 YTSLINGYCKEGDLNEALNLHD 542
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AE + EM G+ + F Y +I G+ G LE R +ME + + V N V+
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+Y + L+ M G+ ++ TYN V+N
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVING 282
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 14/188 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFD--DTYA 173
+I L K G+ E+A IL+ + LG + +C LI+ +C+ H+ R + D
Sbjct: 86 LIHGLCKFGKMEKAAE-ILKGMITLGCKPNSRT--FCLLIEGYCREHNMGRALELLDEME 142
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ N LV S+ S +MI+GLC A L+E+M GL+P+ Y +I G
Sbjct: 143 KRN-LVPSAVSY-------GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMG 194
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y G +E+ R+++ M G D C N ++S ++ +L +++ G+
Sbjct: 195 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 254
Query: 294 VRTYNSVL 301
T+ + +
Sbjct: 255 AVTFGAFI 262
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G+ +A L +EM +KG+ P+ F Y ++ G + G ++ ++ + M
Sbjct: 365 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 424
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G D+V + ++ Y ++ +M G+ YN++++ C M +
Sbjct: 425 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKA 484
Query: 314 LN 315
+N
Sbjct: 485 MN 486
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 88/191 (46%), Gaps = 17/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKH-DSKRGFDDTY 172
I L K G+ +EA L+ S+L +E+ LV Y +LI FCK + ++ F+
Sbjct: 331 FIHGLLKNGRVQEA----LKVFSEL--KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHD 384
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ + + +Y +++ GLC+ G A L + M KGLEP Y +I
Sbjct: 385 EMCLKGIAPNIFIY------NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMID 438
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY + + + + ++M S G + + N ++ ++ + + ++M G
Sbjct: 439 GYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT 498
Query: 293 SVRTYNSVLNS 303
++ ++N++++
Sbjct: 499 TL-SFNTLIDG 508
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q + I GL + G+ EA + E++ KGL P F Y +I G+ + G +E + ++
Sbjct: 326 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 385
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G + N ++ ++ R M + G+ TY+++++
Sbjct: 386 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 439
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ +GLC + +EA+ EEM+ GL+P +I G+ R G ++++ RI + M S G
Sbjct: 16 ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 75
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++ + N+++ ++ + L+ M G + RT+
Sbjct: 76 IPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTF 118
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 47/116 (40%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C A L++EM + L PS Y +I G L +++ +M G
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + V + ++ Y + L M SG+ + YN++++ S M
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 236
>gi|414591629|tpg|DAA42200.1| TPA: hypothetical protein ZEAMMB73_531547 [Zea mays]
Length = 462
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 57/115 (49%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ LC+ G+ E ++ + M +KG P F Y ++ GY G L DM + + M DG
Sbjct: 1 MGSLCKYGKIKEDRDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGI 60
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
D N+++ +Y + L + ++ +M+D G+ V TY +V+ + I M
Sbjct: 61 APDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKM 115
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 34/142 (23%), Positives = 61/142 (42%), Gaps = 5/142 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I + C+ DD + NQ+++ V + A +I G C G +A
Sbjct: 99 VVTYMTVIAALCRIGK---MDDAMEKFNQMIDQG--VVPDKYAYHCLIQGFCTHGSLLKA 153
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI E+ G+ + II +LG + D + I + + G D V NM++
Sbjct: 154 KELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDG 213
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
Y ++ + + M +GI
Sbjct: 214 YCLVGKMEKALRVFDAMVSAGI 235
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 89/199 (44%), Gaps = 25/199 (12%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
++C LI FC H S + +++++N+ + + S+I+ LC++G+ +A+N
Sbjct: 137 YHC-LIQGFCTHGSLLKAKEL---ISEIMNNGMRLDI--VFFGSIINNLCKLGRVMDAQN 190
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER-------------IVNQMESDGTRV 257
+ + GL P Y ++ GY +G +E R +V +M G +
Sbjct: 191 IFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGEMLQKGIKP 250
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-STIMSML 311
T+ N+++ + + +M +SGI + TY+ VL N C + +
Sbjct: 251 STILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLF 310
Query: 312 QDLNSNDFPLSILELTEVL 330
++L + + + I+ L ++
Sbjct: 311 KELRAMNVKIDIITLNTMI 329
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 2/122 (1%)
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R FD+ +L + +V + L +MI+G+ + + EA++L + GL P
Sbjct: 301 RCFDEAIFLFKEL--RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAV 358
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I + GL+E+ E + + M++ G D+ N V+ NE+ R +L K+
Sbjct: 359 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKI 418
Query: 286 KD 287
+
Sbjct: 419 DE 420
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 25/129 (19%), Positives = 56/129 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G +A + EMR G++P Y +I R+G ++D NQM G
Sbjct: 70 LIKAYANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQG 129
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ + H L + + ++ ++G+ + + S++N+ + ++
Sbjct: 130 VVPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQ 189
Query: 315 NSNDFPLSI 323
N D +++
Sbjct: 190 NIFDLTVNV 198
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 63/117 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++GLC+ G+ +E +EM +KG P+ Y +I + R +E+ +++ +M +
Sbjct: 470 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 529
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G D V N ++ + + +L L QK+++ G + T+N+++ + S ++M
Sbjct: 530 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 586
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEA 208
YC+LI+ C D +R +L N + + +K + S++ GLC G A
Sbjct: 328 YCSLINGLCAEGDVERAL--------ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G P Y +I G ++G + D ++N G D N ++
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +L + +++M + GI TYNSVLN
Sbjct: 440 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 474
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ P EA + + M +G P F Y II GY ++ ++++ ++
Sbjct: 260 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 319
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C--STIMSM 310
G D V +++ ++ R + + + GI + YNS++ C I+
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379
Query: 311 LQDLN 315
LQ +N
Sbjct: 380 LQVMN 384
Score = 45.1 bits (105), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I+GLC+MG +A ++ + +KG P F + +I GY + L+ ++V +
Sbjct: 396 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 455
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
M G DT+ N VL+ +++ + Q+M G + TYN ++ N C
Sbjct: 456 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 511
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI++FC+ + +++Q ++ + ++I G C G A L
Sbjct: 503 YNILIENFCRSNKMEEASKVIVKMSQ-----EGLHPDAVSFNTLIYGFCRNGDLEGAYLL 557
Query: 212 IEEMRVKGLEPSGFEYKCIIYGY-GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+++ KG + + +I + G+L + E+I ++M S G R D+ +++
Sbjct: 558 FQKLEEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKGHRADSYTYRVLIDGSC 616
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVL 330
+ R + L +M G S+ T+ V+NS + + Q + + I + EV+
Sbjct: 617 KTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 676
Query: 331 NEEEVSVVKELEDSSVLDEAM 351
+ + KE+ +L E +
Sbjct: 677 DTILNADKKEIAAPKILVEDL 697
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C L HD+++ FD Q++++ V+ A ++ LC+ G EA L+
Sbjct: 159 CGLYAHGHTHDARQLFD-------QMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLL 209
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++ +G+ + F Y I G G L + R+V+ M + D V N ++
Sbjct: 210 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKK 268
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ + +L++M + G TYN++++ I SM+Q+
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQE 308
>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
Length = 700
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 8/183 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +AE +LE L G ++ Y LI+ +C+ RG + Q+
Sbjct: 344 LCKDGKVAKAEQ-VLEMLVHTGLVPTTVI--YNTLINGYCQVRDLRG---AFCIFEQM-- 395
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + ++I+GLC++ +AE+L+ EM G++PS + +I YG G L
Sbjct: 396 KSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E +++ M+ G + D + V+ ++ + ++ V L M + + + YNS+
Sbjct: 456 EKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSI 515
Query: 301 LNS 303
+++
Sbjct: 516 IDA 518
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ E+ T +L + + G + V+ + +++ +FCK+ + A L+ ++
Sbjct: 453 GQLEKCFT-VLSDMQQKGIKSD--VISFGSVVKAFCKNGK---IPEAVAILDDMI--YKD 504
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V Q S+I E G +A L+E+M+ G+ S Y ++ G R +++ E
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ + + G R D V N ++S+ + + + + LQ+M GI ++RTY++++++
Sbjct: 565 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 624
Query: 305 ST 306
++
Sbjct: 625 AS 626
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G+ +AE ++E + GL P+ Y +I GY ++ L I QM+S
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CS 305
R D + N +++ +++ + +M+ SG+ SV T+N+++++ C
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459
Query: 306 TIMSMLQ 312
T++S +Q
Sbjct: 460 TVLSDMQ 466
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + P GF Y + G R G M + + G
Sbjct: 270 LLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG 329
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++L+ ++++ L+ + +G+ + YN+++N
Sbjct: 330 VMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 378
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G+ +A + +EM G+ P+ Y +I G+ + G LE R+ +QM DG
Sbjct: 200 VIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 259
Query: 255 TRVDTVCSNMVLSS 268
+ + V N++LS
Sbjct: 260 PKPNIVTYNVLLSG 273
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 44/99 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++IS C G +A L++EM G+ P+ Y ++ G + DME + QM
Sbjct: 584 TIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHK 643
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+ +++ +Y S++ ++M + GI F
Sbjct: 644 NVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAF 682
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ +I L K+G+ EEA ++SK + V Y +LIDSF K+G D
Sbjct: 812 SSLIDSLGKEGRVEEAYYFFENSISKGCTPN---VGVYSSLIDSF----GKKGMVDRALE 864
Query: 175 LNQLVNSSSSVYVKRQ------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
L + + +RQ +++SGL + G+ + AE L+EEM G P Y
Sbjct: 865 LFEEMQ-------RRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYN 917
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I G G++G++++ E +M+ G D + ++ S G ++L M++
Sbjct: 918 ILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLEACELFDSMEEE 977
Query: 289 GIPFSVRTYNSVLN 302
G SV TYN +++
Sbjct: 978 GYNPSVVTYNVLID 991
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 98/221 (44%), Gaps = 13/221 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF ++ ++TEE P +VA ++ L K G+ A +I ++K R V+
Sbjct: 757 AFNMFTKMTEEGH---EPDVVAYTSLMDVLGKGGKLSHA-LIIFRAMAK--KRCVPDVVT 810
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LIDS K ++ Y ++ + V S+I + G A L
Sbjct: 811 YSSLIDSLGKEGR---VEEAYYFFENSISKGCTPNVG--VYSSLIDSFGKKGMVDRALEL 865
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EEM+ + P+ Y ++ G + G L E+++ +ME G D V N+++ G
Sbjct: 866 FEEMQRRQCPPNIVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGK 925
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + ++MK+ GI V T+ S++ S + +L+
Sbjct: 926 MGMVDEAESYFKRMKEKGIVPDVITFTSLIESLGKVDKLLE 966
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M++GL + + EA L++ M+ + + P F Y ++ G G+ G LE+ + +M +G
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V ++ G +LS ++ + M V TY+S+++S
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDS 817
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 48/236 (20%), Positives = 88/236 (37%), Gaps = 21/236 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P N + +L P L L + F +N +I L K GQ +
Sbjct: 425 PNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGAVPDVFTYNT-----LIDVLGKGGQMD 479
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY-- 186
+ +I E + K G + DS G + T ++ V S +
Sbjct: 480 KVLAIIKEMVEKGG--------------ECIISRDSNAGHEGTIEGADRTVEYPSLGFKS 525
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ +++S G EA L+E M+ P+ Y ++ G G+ G L++ +
Sbjct: 526 LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAGRLDEAVSL 585
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +ME G V + +++S+ ++ + +M G V TY+ V+N
Sbjct: 586 LREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVIN 641
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 45/104 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I L + G EA M+ P+ Y ++ G + G LE+ + +M+ +
Sbjct: 328 LIDALVKSGNIDEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENN 387
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
D + N ++ G E ++MKD G+ ++RTYN
Sbjct: 388 CSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYN 431
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ L K G+ +EA +L+ E + K G V+ Y +L+ SF K D + +++ + +
Sbjct: 569 LVDGLGKAGRLDEAVSLLRE-MEKQGCEPS--VVTYSSLMASFYKRDQE---EESLSLFD 622
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V V +L +I+ LC+ +A ++ M+ +G+EP YK ++ +
Sbjct: 623 EMVRKGCVADVSTYSL--VINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVK 680
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ +I N+++ DT N++++ N + + MK+ I + T
Sbjct: 681 DEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPDLFT 740
Query: 297 YNSVLNS 303
Y S+L+
Sbjct: 741 YTSLLDG 747
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 49/99 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I GL + G+ A L +EM+ +GL P+ Y +I G+ G + ++ + +
Sbjct: 394 AYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDL 453
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+ G D N ++ G ++ +++ +++M + G
Sbjct: 454 KEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +I K+G EA L E + + V Y +LI+ FC H D+K
Sbjct: 778 NVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN---VFTYNSLINGFCIHGCLGDAK 834
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD + S + ++I+G C+ + + L EM +GL F
Sbjct: 835 YMFD---------LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF 885
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+GY + G L +++ N+M G D V N++L ++ ++ + ++ ++ +
Sbjct: 886 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 945
Query: 286 KDSGIPFSVRTYNSVLNS-CST 306
+ S + + TYN ++ C T
Sbjct: 946 QKSEMDVDIITYNIIIQGLCRT 967
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 18/200 (9%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----D 163
NP +V +I KQG +EA+ L E + S + Y ++I+ C H D
Sbjct: 243 NPDVVTFTALIDVFVKQGNLDEAQELYKEMIQ---SSVDPNNVTYNSIINGLCMHGRLYD 299
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+K+ FD + +S + ++ISG C+ E L + M +G
Sbjct: 300 AKKTFD---------LMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNAD 350
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
F Y +I+GY ++G L I M S D + ++L + E+ ++
Sbjct: 351 IFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFD 410
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
M++S + YN +++
Sbjct: 411 DMRESEKYIGIVAYNIMIHG 430
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C + A +++ +M G EPS + +++G+ + + D +V M G
Sbjct: 112 LIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSG 171
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C-----STIM 308
+ V N ++ + EL+ + L +M+ G+ V TYN++L C S
Sbjct: 172 YEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAA 231
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKL 360
ML+D+ ++ T +++ +E + KE+ SSV + ++S L
Sbjct: 232 RMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGL 291
Query: 361 DLHG 364
+HG
Sbjct: 292 CMHG 295
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G+ + A L+ EM KGL Y ++ G G D R++ M
Sbjct: 181 TLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKR 240
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V ++ + L ++M S + + TYNS++N
Sbjct: 241 SINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIING 290
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC + EA L + KG++P Y +I G R GL + +++ +M+ DG
Sbjct: 960 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 1019
>gi|356574710|ref|XP_003555488.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 821
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 2/143 (1%)
Query: 167 GFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
G Y + QL +S V R + S+I L QPH A+ +++M+ GL
Sbjct: 500 GIGKCYEKACQLFDSMEKHGVVADRCSYTSLIHILASADQPHIAKPYLKKMQEAGLVSDC 559
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I + +LG LE E I +M G + D + ++++ + D + + ++ +
Sbjct: 560 IPYCAVISSFAKLGQLEMTEDIYREMIRHGVQPDVIVHGILINVFSDAGRVKEAIGYVDE 619
Query: 285 MKDSGIPFSVRTYNSVLNSCSTI 307
MK +G+P + YNS++ + I
Sbjct: 620 MKKAGLPGNTVIYNSLIKLYAKI 642
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I + GQ EA EM +G+ P+ + +I G G LE++ +V +ME
Sbjct: 286 TLIDTYGKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKMEEL 345
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+T N+++S + H+++ + + MK++ + + +Y ++L + S I M+++
Sbjct: 346 RCSPNTRTYNILISLHAKHDDIGMATKYFETMKEACLEPDLVSYRTLLYAYS-IRKMIRE 404
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I YG+ G L++ + +M G TV N +++ G+H L + L ++KM+
Sbjct: 284 YNTLIDTYGKAGQLKEASQTFVEMLKQGVAPTTVTFNTMINICGNHGRLEEVSLLVRKME 343
Query: 287 DSGIPFSVRTYNSVLN 302
+ + RTYN +++
Sbjct: 344 ELRCSPNTRTYNILIS 359
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
Q QR E + ++ G V Y LI C+ D+ LN++++
Sbjct: 64 QAQRFEEARSVFRGMAAQGCSPN--VFSYSILIAGLCRGQK---VDEAAELLNEMIDGGH 118
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V S++SGLC+MG+ EA +L M +G P G Y +I G+ + G + +
Sbjct: 119 QPNVVTYG--SLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R+ +M G N +LS + E R+ + M G ++ T+N++L+
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236
Query: 304 CSTIMSMLQ 312
+ M++
Sbjct: 237 FCKMGDMVE 245
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 15/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA L + + +EA L+ E + G + +V Y +L+ CK + D ++R+
Sbjct: 93 LIAGLCRGQKVDEAAELLNEMID--GGHQPNVVT-YGSLLSGLCKMGKLKEAVDLFSRMV 149
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
V +I G + G EA L EEM KG P+ F Y ++ G+ R
Sbjct: 150 YRGCPPDGV-----VYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSR 204
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G ++ + M G + N +L + GD E R+ L +M+ G P
Sbjct: 205 KGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFL---EMRSLGCPPD 261
Query: 294 VRTYNSVLNS-CS 305
V +YN+++ CS
Sbjct: 262 VVSYNTLMRGMCS 274
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 50/111 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++ G C+MG EA L EMR G P Y ++ G G + +R++ +M
Sbjct: 230 FNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMI 289
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D V N+++ Y L + ++ SG+ +Y+++++
Sbjct: 290 RSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIID 340
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 6/139 (4%)
Query: 169 DDTYARLNQLVNSSS--SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D Y N ++ + + Y L+S LC+ + EA ++ M +G P+ F
Sbjct: 34 DHVYGTYNDMLGAGCVPNTYTYGYLLRS----LCQAQRFEEARSVFRGMAAQGCSPNVFS 89
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I G R +++ ++N+M G + + V +LS +L V +M
Sbjct: 90 YSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMV 149
Query: 287 DSGIPFSVRTYNSVLNSCS 305
G P YN +++ S
Sbjct: 150 YRGCPPDGVVYNVLIDGFS 168
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 63/117 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++GLC+ G+ +E +EM +KG P+ Y +I + R +E+ +++ +M +
Sbjct: 471 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 530
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G D V N ++ + + +L L QK+++ G + T+N+++ + S ++M
Sbjct: 531 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 587
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEA 208
YC+LI+ C D +R +L N + + +K + S++ GLC G A
Sbjct: 329 YCSLINGLCAEGDVERAL--------ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G P Y +I G ++G + D ++N G D N ++
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +L + +++M + GI TYNSVLN
Sbjct: 441 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 475
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ P EA + + M +G P F Y II GY ++ ++++ ++
Sbjct: 261 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 320
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C--STIMSM 310
G D V +++ ++ R + + + GI + YNS++ C I+
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380
Query: 311 LQDLN 315
LQ +N
Sbjct: 381 LQVMN 385
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 1/116 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I+GLC+MG +A ++ + +KG P F + +I GY + L+ ++V +
Sbjct: 397 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 456
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
M G DT+ N VL+ +++ + Q+M G + TYN ++ N C
Sbjct: 457 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFC 512
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 7/201 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI++FC+ + +++Q ++ + ++I G C G A L
Sbjct: 504 YNILIENFCRSNKMEEASKVIVKMSQ-----EGLHPDAVSFNTLIYGFCRNGDLEGAYLL 558
Query: 212 IEEMRVKGLEPSGFEYKCIIYGY-GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+++ KG + + +I + G+L + E+I ++M S G R D+ +++
Sbjct: 559 FQKLEEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKGHRADSYTYRVLIDGSC 617
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVL 330
+ R + L +M G S+ T+ V+NS + + Q + + I + EV+
Sbjct: 618 KTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV 677
Query: 331 NEEEVSVVKELEDSSVLDEAM 351
+ + KE+ +L E +
Sbjct: 678 DTILNADKKEIAAPKILVEDL 698
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C L HD+++ FD Q++++ V+ A ++ LC+ G EA L+
Sbjct: 160 CGLYAHGHTHDARQLFD-------QMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLL 210
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++ +G+ + F Y I G G L + R+V+ M + D V N ++
Sbjct: 211 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKK 269
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ + +L++M + G TYN++++ I SM+Q+
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQE 309
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ C + + ++ Q N V ++I LC+ ++A
Sbjct: 198 VISYNTLINGLCNSGNTNMAVHVFKKMEQ--NGCKPNVV---TYNTIIDSLCKDRLVNDA 252
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + EM +G+ P Y I++G LG L + R+ +ME +G + D V N+++ S
Sbjct: 253 MDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDS 312
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +L +M D GIP V TY ++L+
Sbjct: 313 LYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHG 347
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 79/190 (41%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +IDS CK R +D L+++V + S++ GLC +GQ +EA
Sbjct: 233 VVTYNTIIDSLCK---DRLVNDAMDFLSEMV--GRGIPPDAITYNSIVHGLCCLGQLNEA 287
Query: 209 ENLIE-----------------------------------EMRVKGLEPSGFEYKCIIYG 233
L + EM +G+ P Y I++G
Sbjct: 288 TRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHG 347
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
LG L + R+ +ME G + D V N ++ S ++ + +L +M D GIP +
Sbjct: 348 LCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPN 407
Query: 294 VRTYNSVLNS 303
TY+++L+
Sbjct: 408 AVTYSTILHG 417
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 29/192 (15%)
Query: 134 ILETLSKLGS----RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS-------- 181
I+E LGS ++ V++ CN +D F G T LN L+N
Sbjct: 93 IVEFGKFLGSIAKMKQYSTVVYLCNQMDLF-------GVTHTVYSLNILINCLCRLNHVD 145
Query: 182 -SSSVYVKRQAL---------KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ SV+ K L ++I+G+C G+ A L EM G EP Y +I
Sbjct: 146 FAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLI 205
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G + +ME +G + + V N ++ S ++ + +L +M GIP
Sbjct: 206 NGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIP 265
Query: 292 FSVRTYNSVLNS 303
TYNS+++
Sbjct: 266 PDAITYNSIVHG 277
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 56/113 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I LC+ ++A + EM +G+ P+ Y I++G+ LG L++ ++ +M
Sbjct: 375 AYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+T+ ++++ +S + M + G+ ++ TYN+++N
Sbjct: 435 VGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNG 487
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 54/117 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ G EA + E M KG+EP+ + Y ++ GY + + ++ M G
Sbjct: 449 LVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG 508
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
D N++++ Y + + + L +M + + TYN+++ + +L
Sbjct: 509 CAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLL 565
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 19/186 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T IL L LG + LF Y +IDS CK R +D L++
Sbjct: 342 TTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCK---DRLVNDAMEFLSE 398
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+V+ + +++ G C +GQ EA L +EM + + P+ + ++ G +
Sbjct: 399 MVDRG--IPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQE 456
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G++ + + M G + N +++ Y +++ + M G + +Y
Sbjct: 457 GMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSY 516
Query: 298 NSVLNS 303
N ++N
Sbjct: 517 NILING 522
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 73/161 (45%), Gaps = 8/161 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ EA T + + + + G + V+ Y +IDS K R +D L+++V+
Sbjct: 282 GQLNEA-TRLFKRMEQNGCKPD--VVTYNIIIDSLYK---DRLVNDAADFLSEMVDQGIP 335
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V +++ GLC +GQ +EA L ++M KG +P Y II + L+ D
Sbjct: 336 PDV--VTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAM 393
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+++M G + V + +L + + +L ++M
Sbjct: 394 EFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEM 434
>gi|224054488|ref|XP_002298285.1| predicted protein [Populus trichocarpa]
gi|222845543|gb|EEE83090.1| predicted protein [Populus trichocarpa]
Length = 575
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 100/213 (46%), Gaps = 15/213 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREE--AETLILETLSKLGSRERELVLFYCNLIDSFCK--H 162
F+ N K V++I + + G R + + L+++ + RE E + + ++D+ + H
Sbjct: 268 FETNYKEVSKIYDQMQRSGLRPDVVSYALLIKAYGR-ARREEEALAVFEEMLDAGVRPSH 326
Query: 163 DSKRGFDDTYARLNQLVNSSSSVY--VKRQ-------ALKSMISGLCEMGQPHEAENLIE 213
+ D +A ++ +V + V+ ++R + +M+S AEN +
Sbjct: 327 KAYNILLDAFA-ISGMVEQARVVFKSMRRDRCTPDLCSYTTMLSAYVNASDMEGAENFFK 385
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+R GL+P+ Y +I G+ ++ LE M I +M+ + + + ++ +YG +
Sbjct: 386 RLRQDGLKPNVVTYGALIKGHAKVNNLEKMMEIYEEMQLNSIKANQTILTTIMDAYGKNK 445
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ V+W ++M+ G+P + N +L+ T
Sbjct: 446 DFGSAVIWYKEMEHHGVPPDQKAQNILLSLAKT 478
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + EA + EEM G+ PS Y ++ + G++E + M D
Sbjct: 297 LIKAYGRARREEEALAVFEEMLDAGVRPSHKAYNILLDAFAISGMVEQARVVFKSMRRDR 356
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIM 308
D +LS+Y + +++ + ++++ G+ +V TY +++ N+ +M
Sbjct: 357 CTPDLCSYTTMLSAYVNASDMEGAENFFKRLRQDGLKPNVVTYGALIKGHAKVNNLEKMM 416
Query: 309 SMLQDLNSNDFPLSILELTEVLN 331
+ +++ N + LT +++
Sbjct: 417 EIYEEMQLNSIKANQTILTTIMD 439
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC +I F K + + + Y ++++ + +I LC+ G E+E L
Sbjct: 184 YCAVISGFYKENCQI---EAYHLFDEML--KQGICPDILTFNKLIHVLCKKGNVQESEKL 238
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ +G+ P+ F + I G R G +++ R++ + S+G D + N ++ +
Sbjct: 239 FSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H++L +L KM +SG+ + TYN+++N
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 23/253 (9%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI---TEESWFQWNP 111
A+RL+ V+ +P I+ N L + H +L L+ + E + F +N
Sbjct: 270 AARLLESIVSEGLTPDVISYNTL---ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDD 170
II K G + A+ ++ + + K G E Y +LI+ C D R
Sbjct: 327 -----IINGFCKAGMMQNADKILRDAMFK-GFIPDEFT--YSSLINGLCNDGDMNRAMAV 378
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
Y + + S +Y +++ GL + G +A L+++M G P + Y +
Sbjct: 379 FYEAMEKGFKHSIILY------NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ G ++G L D I+N + G D N ++ Y + + + L M GI
Sbjct: 433 VNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI 492
Query: 291 PFSVRTYNSVLNS 303
V TYN++LN
Sbjct: 493 TPDVITYNTLLNG 505
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 10/200 (5%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCKHDSKRGFDDTYAR 174
++I L K+G +E+E L SK+ R LF N+ I C+ +G D AR
Sbjct: 221 KLIHVLCKKGNVQESEKL----FSKVMKRGVCPNLFTFNIFIQGLCR----KGAIDEAAR 272
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L + + S + + ++I G C+ + EAE + +M G+EP+ F Y II G+
Sbjct: 273 LLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGF 331
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G++++ ++I+ G D + +++ + +++R + + + G S+
Sbjct: 332 CKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI 391
Query: 295 RTYNSVLNSCSTIMSMLQDL 314
YN+++ S +LQ L
Sbjct: 392 ILYNTLVKGLSKQGLVLQAL 411
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 17/220 (7%)
Query: 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL- 150
S A L+ R+ E+ F N +I L + G +EEA L+ E L ER LVL
Sbjct: 424 SEAIELWYRLLEKG-FAANTVTSNALIHGLCEAGSKEEAAKLLKEML------ERGLVLD 476
Query: 151 --FYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI + CK + GF + + + Y ++ GLC MG+ E
Sbjct: 477 SISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTY------NMLLHGLCNMGKIEE 530
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L E + G P + Y +I GY + +E+ E++ +M + + V ++
Sbjct: 531 AGGLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIR 590
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+Y ++ + M+ GIP + TY+S+++ S I
Sbjct: 591 AYCENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNI 630
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 94/211 (44%), Gaps = 33/211 (15%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDD 170
K + EE E L E ++ + + + Y LI ++C++ + RG
Sbjct: 559 KANRVEEGEKLFQEMVTM---KIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQ 615
Query: 171 TYARLNQLVNSSSSVYV-----------KRQALK-------SMISGLCEMGQPHEAENLI 212
T A + L++ S++ + +++ L ++I G C++GQ H+ ++++
Sbjct: 616 TSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSIL 675
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+EM + + P+ Y +I G+ +LG ++ +++N+M G D V N + + +
Sbjct: 676 QEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKE 735
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M GI TY ++++
Sbjct: 736 GKMEEALKVCDLMSTGGISLDDITYTTLIDG 766
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 82/181 (45%), Gaps = 13/181 (7%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNS 181
G R + + + K+G V+ Y N+I CK+ D F + + + V
Sbjct: 210 GGRVDDAIELFRKMEKVGVAPN--VVTYNNIIHGLCKNGRLDEAFQFKEKMEK--ERVKP 265
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S Y +I+GL ++ + EA +++EM +G P+ Y +I GY R+G +
Sbjct: 266 SLVTY------GVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNIS 319
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+I + M S+G ++V N ++ Y N++ L++M G + T+ SV+
Sbjct: 320 TALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVI 379
Query: 302 N 302
+
Sbjct: 380 H 380
Score = 38.1 bits (87), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+M++ C G+ +A L +M G+ P+ Y II+G + G L++ + +ME
Sbjct: 200 FSTMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKME 259
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN------SCS 305
+ + V ++++ L++M D G + YN++++ + S
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNIS 319
Query: 306 TIMSMLQDLNSN 317
T + + D+ SN
Sbjct: 320 TALQIRDDMISN 331
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 75/167 (44%), Gaps = 5/167 (2%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C+ K +D + L+++V + ++ S+I G C G + +
Sbjct: 475 YSILIDSHCE---KGQVEDAFGFLDEMVKKGNLPNIR--TYNSIIKGYCRSGNVKKGQQF 529
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++MR + P + +I+GY + + + N ME + R D V NM+++ + +
Sbjct: 530 LQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSE 589
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
+ + M DSGI TY S++N T + Q +D
Sbjct: 590 QGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHD 636
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +++ CKH R FD + SV ++ +I G C +G+ EA
Sbjct: 227 IVTYNSVLKGLCKH---RRFDKAKEVFRTM--DQCSVAPDVRSFNILIGGFCRVGEVKEA 281
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM+ + + P + C+I + R G ++ + +M+ G D V MV+
Sbjct: 282 VKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGG 341
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +S + +M G V TYN++LN
Sbjct: 342 FCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNG 376
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+C G +A L ++M + + P+ Y +I + G +ED +++M
Sbjct: 442 SLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKK 501
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N ++ Y + + +LQKM+ + + T+N++++
Sbjct: 502 GNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHG 551
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 51/113 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +I G+ A + EM+ GL P G Y +I G+ R G + + R+ ++M
Sbjct: 299 SFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEM 358
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +L+ + L L +M++ G+ + T+ ++++
Sbjct: 359 VGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHG 411
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC+ + +AE L+ EM +G+ P + +I+GY R G E+ ++ + +
Sbjct: 372 TLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQ 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRM-VLW 281
R D V N ++ +L++ LW
Sbjct: 432 RLRPDVVTYNSLIDGMCRKGDLAKANELW 460
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G EA + +EM G P Y ++ G + L D E+++N+ME G
Sbjct: 338 VIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERG 397
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D ++ Y + + + V TYNS+++
Sbjct: 398 VTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTYNSLIDG 446
>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G+C+MG+ ++A L+ + VKGL+ + Y +I G R GLL+D E ++ +M+ +G
Sbjct: 470 MLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENG 529
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ N+ + +++R +LQ MKD G P T
Sbjct: 530 CPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATT 571
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 103/240 (42%), Gaps = 35/240 (14%)
Query: 72 IALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREE 129
IA+N L H+ R ++L F + +T+ P LV I+ L +G
Sbjct: 115 IAINCLCHM--------RKTTLGFAVLGLMTK---IGLEPTLVTLNTIVNGLCIEGDVNH 163
Query: 130 AETLILETLSKLGSRERELVLFYCN------LIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
A L+ E + LG ++CN L++ CK G + ++ + N
Sbjct: 164 ALWLV-EKMENLG--------YHCNARTYGALVNGLCKIGDTSGALECLKKMVKR-NLGP 213
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-GRLGLLED 242
+V V +++ GLC+ G EA L+ EM V +EP+ Y C+I G G G +
Sbjct: 214 NVVV----YNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWRE 269
Query: 243 MERIVNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ N+M ++ G D ++++ + L R + M G+ +V TYNS++
Sbjct: 270 GVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLI 329
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 97/224 (43%), Gaps = 11/224 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L K+G EA L+ E + + E +V + C LI C G+ + N
Sbjct: 221 ILDGLCKRGLVGEALGLLHEM--GVVNVEPNVVTYNC-LIQGLCGEFG--GWREGVGLFN 275
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + + Q ++ G C+ G AE+++ M G+EP+ Y +I GY
Sbjct: 276 EMV-AEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCL 334
Query: 237 LGLLEDMERIVNQM--ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+E+ R+ M E +G V N ++ + E+ + + L +M G+ V
Sbjct: 335 RSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDV 394
Query: 295 RTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVV 338
T+ S++ + + L + + ++ E +V N + +VV
Sbjct: 395 FTWTSLIGGFCEVK---KPLAARELFFTMKEHGQVPNLQTCAVV 435
>gi|313851107|ref|NP_001186539.1| pentatricopeptide repeat protein [Zea mays]
gi|312064725|gb|ADQ27447.1| pentatricopeptide repeat protein [Zea mays]
gi|414872960|tpg|DAA51517.1| TPA: hypothetical protein ZEAMMB73_325693 [Zea mays]
Length = 489
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 85/173 (49%), Gaps = 4/173 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++M +G +P+ F Y +++ YG +ED ME DG
Sbjct: 250 MVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSILVHTYGVDMRIEDAVAAFLDMEKDG 309
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D V N +++++ + + M+ GI + RT+N +LN T++S+ +D
Sbjct: 310 IMPDVVVYNALITAFCKVKKFENAFRVMDDMQGHGISPNSRTWNIILN---TLISLGKDD 366
Query: 315 NSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMK-WDSGETKLDLHGMH 366
+ S+++ + ++ ++K ++ ++ A+K W K L MH
Sbjct: 367 EAYRVFRSMIKRCKPDSDTYTMMIKMFCENDKIEMALKVWKYMRLKQFLPSMH 419
>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 713
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+ES + N + ++ K G+ EA ++ + L S + V+ YC LID CK
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD---SGFQPNVITYCALIDGLCKA 516
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S D+ + N++ + V QA +++ GLC+ G +EA L EM KG+
Sbjct: 517 GS---IDEAISHFNKMRDLGLDPNV--QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSL 571
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y ++ GY + G L D + +M G ++D C +S + + N +
Sbjct: 572 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVF 631
Query: 283 QKMKDSGIPFSVRTYNSVLN 302
+M GI YN +++
Sbjct: 632 SEMIGHGIAPDRAVYNCLIS 651
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA +L M+ G P + +I GYG+ G L+++E++V +M G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N +++ + + + MK G+ +V T+++ +++
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDA 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 46 LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105
L LA R + RL + A P N + L + SL + R+ E
Sbjct: 165 LRLARDRSGRLVRRLFEQLPA--PNVFTFNIVIDFLCKEGELAEARSL----FSRMKEMG 218
Query: 106 WFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
P +V +I K G+ +E E L+ E + + G + V+ Y LI+ FCK
Sbjct: 219 CL---PDVVTFNSLIDGYGKCGELDEVEQLV-EEMRRSGCKAD--VVTYNALINCFCKFG 272
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+A + + V + + C+ G EA L +MRV+G+ +
Sbjct: 273 RMETAYGYFAAMKR-----EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
F Y C+I G + G L+D ++++M G ++ V +++ +++ L+
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
M+ +G+ + Y ++++
Sbjct: 388 MMEKAGVRANELLYTTLIHG 407
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G EA + +MR GL+P+ Y ++ G + G L + ++ N+M
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V +L Y L KM DSG+ + Y ++
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 12/223 (5%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+S FQ N +I L K G +EA + + LG V Y L+D CK+
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISH-FNKMRDLGLDPN--VQAYTALVDGLCKNG 552
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
++ N++V+ S+ + +++ G + G H+A L +M GL+
Sbjct: 553 C---LNEAVQLFNEMVHKGMSL--DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
F Y C I G+ L ++ + + ++M G D N ++S Y L + LQ
Sbjct: 608 LFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKYQKLGNLEEAI-SLQ 666
Query: 284 KMKDSGIPFSV--RTYNSVLNSCSTIMSMLQDLNSN-DFPLSI 323
+ +P T + C+T Q L S FP+S+
Sbjct: 667 DEMERVLPSCTDSDTATDAGSVCTTKCIRCQILGSTPKFPVSL 709
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK DD L+++V + V + ++ GLC+ + EAE++
Sbjct: 331 YTCLIDGTCKAGR---LDDAIVLLDEMVRQGVPLNVVTYTV--LVDGLCKERKVAEAEDV 385
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M G+ + Y +I+G+ E ++++M++ G +D ++ +
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCN 445
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFPLSILE 325
++L L KM +SG+ + Y +++++C ++MLQ + + F +++
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505
Query: 326 LTEVLN 331
+++
Sbjct: 506 YCALID 511
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+ID CK ++R+ ++ V S+I G + G+ E E L+EE
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVV-----TFNSLIDGYGKCGELDEVEQLVEE 248
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
MR G + Y +I + + G +E M+ +G + V + + ++
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN-SCST-----IMSMLQDLNSNDFPLSILELTE 328
+ + +M+ G+ + TY +++ +C + +L ++ PL+++ T
Sbjct: 309 VREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTV 368
Query: 329 VLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380
+++ E V++ +E + V + + T L +HG + L + E
Sbjct: 369 LVDGLCKERKVAEAEDVLRMMEKAGVRANELLY----TTL-IHGHFMNKNSEKALGLLSE 423
Query: 381 MRNR 384
M+N+
Sbjct: 424 MKNK 427
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 119/275 (43%), Gaps = 24/275 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS-FCKHDSKRGFDDTYARLNQLV 179
L K+ + EAE +L + K G R EL+ Y LI F +S++ N+ +
Sbjct: 373 LCKERKVAEAED-VLRMMEKAGVRANELL--YTTLIHGHFMNKNSEKALGLLSEMKNKGL 429
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
S+Y ++I GLC + + EA++L+ +M GLEP+ Y ++ + G
Sbjct: 430 ELDISLY------GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + ++ ++ G + + + ++ + + KM+D G+ +V+ Y +
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543
Query: 300 VL-----NSC-STIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKE--LEDSSVLDEAM 351
++ N C + + + ++ L + T +L+ +K+ L D+ L M
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLD----GYLKQGNLHDAFALKAKM 599
Query: 352 KWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386
DSG +LDL + F L M E R F+
Sbjct: 600 -IDSG-LQLDLFCYTCFISGFCNLNMMPEAREVFS 632
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 149 VLFYCNLIDSFCKH-------DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
V+ Y L+D CK D R + R N+L+ ++ +I G
Sbjct: 363 VVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT------------LIHGHFM 410
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+A L+ EM+ KGLE Y +I G + L++ + ++ +M+ G + +
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + ++ + LQK+ DSG +V TY ++++
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDG 512
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 134 ILETLSKLGSRERELVLF------------YCNLIDSFCKHDSKRGFDDTYARLNQLV-- 179
IL+ ++G +R L F YC LI C+ + D+ Y L++++
Sbjct: 65 ILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQC---QRIDEAYQLLDEMIQK 121
Query: 180 --NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ ++VY +I+GLC+MG+ A N+++ M + P Y +I G +
Sbjct: 122 DCHPDAAVY------NCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQT 175
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
L++ +++ +M+ G DTV N +L+ N+L + L++M ++G +Y
Sbjct: 176 NALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSY 235
Query: 298 NSVL 301
N+V+
Sbjct: 236 NTVV 239
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/279 (21%), Positives = 117/279 (41%), Gaps = 40/279 (14%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A +L+ K S +P +A NAL + L +S L + E F +N
Sbjct: 181 ARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNT--- 237
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDD 170
++A L + G+ EEA ++ + + K + V+ Y +L+D FCK +++R +D
Sbjct: 238 --VVACLCESGKYEEAGKILEKMIEKKCGPD---VVTYNSLMDGFCKVSKMDEAERLLED 292
Query: 171 T------------------YARLNQLVNS--------SSSVYVKRQALKSMISGLCEMGQ 204
++R ++L ++ + + ++ GLC+ G+
Sbjct: 293 MVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGK 352
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA L+E M K P Y ++ G +LG ++D ++ M G + + V N
Sbjct: 353 LEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNT 412
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + ++ L+ MK+ V TY+++++
Sbjct: 413 MIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDG 451
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ + EA L++EM K P Y C+I G ++G ++ ++ M
Sbjct: 98 LIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS 157
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + ++ N L ++KMK+SG+ YN++LN
Sbjct: 158 CVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNG 206
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC+ + +A N+++ M KG P Y +I G+ ++ ++ + M G
Sbjct: 547 LINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSG 606
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
D + N+++S + + + + +Q M + G TY S++ S +T
Sbjct: 607 CEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTT 658
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 14/174 (8%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
++E + K G +LV + C L+D CK ++ + L +V + V ++
Sbjct: 324 VMEDMFKAGISP-DLVTYNC-LLDGLCKAGK---LEEAHELLEVMVEKDCAPDVVTYSI- 377
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC++G+ +A L+E M +G +P+ + +I G+ + G +++ +++ M+
Sbjct: 378 -LVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEV 436
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
D V + ++ Y N + L GI +Y+S+L CST
Sbjct: 437 SCTPDVVTYSTLIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCST 484
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 11/162 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK + + D +A L + + + SM+ GLC G+ EA
Sbjct: 442 VVTYSTLIDGYCKANRMQ---DAFAILG--------ISPDKASYSSMLEGLCSTGKVEEA 490
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ +++ M +G P+ Y II G + ++ +++ M G + +++++
Sbjct: 491 QEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILING 550
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + L M + G V TY S+++ I M
Sbjct: 551 LCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKM 592
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA L K G+ + A ++ L + + V+ Y +LI C+ ++ D+ +
Sbjct: 133 LIAGLCKMGKIDAARNVLKMMLERSCVPD---VITYTSLIVGCCQTNA---LDEARKLME 186
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ S + A ++++GLC+ Q E L+EEM G EP F Y ++
Sbjct: 187 KM--KESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCE 244
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G E+ +I+ +M D V N ++ + +++ L+ M +V T
Sbjct: 245 SGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVIT 304
Query: 297 YNSVLNS 303
Y +++
Sbjct: 305 YTTLIGG 311
>gi|147784775|emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
Length = 549
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 118/270 (43%), Gaps = 29/270 (10%)
Query: 105 SWFQWNPKLV-AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
SWF K+ A ++ L K+ + +T + ++ L RE + ++D F +
Sbjct: 284 SWFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASL-CREDGTISMAVEMLDDFSGEE 342
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSM--------------ISGLCEMGQPHEAE 209
K A + L S KR LK + I+GL + G+ EA
Sbjct: 343 CKYAIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAM 402
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+++ M +GL+P + Y I+ GY G++E+ R++++ + + +++ V + ++ Y
Sbjct: 403 KMMKLMETRGLKPDVYTYSVIMSGYAHGGMMEEACRVLSEAKRNHSKLSPVTYHTLIRGY 462
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC-------STIMSMLQDLNSNDFPLS 322
+ + V L +MK+ G+ + YN ++ S T +L+++ N L+
Sbjct: 463 CKLEQFDKAVELLGEMKEHGVQPNTDEYNKLIQSLCLKALDWQTAEKLLEEMKQNGLHLN 522
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAMK 352
+T L + VKELE+ E ++
Sbjct: 523 --GITRGL----IRAVKELEEEGRATEELR 546
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC----KHDSKRGFDDTY 172
+I L K+G +EA+ L L ++K G + V+ Y L+D +C ++K+ F +
Sbjct: 226 LINALCKEGNVKEAKNL-LAVMTKEGIKPG--VVTYSTLMDGYCLVGEVQNAKQIF---H 279
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
A + VN + Y MI+GLC+ + EA NL+ EM K + P Y +I
Sbjct: 280 AMVQMGVNPNVYSY------NIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLID 333
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G + ++N+M G D V +L + + L + KMK+ GI
Sbjct: 334 GLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQP 393
Query: 293 SVRTYNSVLNS 303
++ TY ++++
Sbjct: 394 TMYTYTALIDG 404
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +ID CK D Y+ ++ + ++ ++I G C +GQ
Sbjct: 147 RPNVVMYNTIIDGLCKDKLVNEAYDLYSEMD-----ARGIFPDAITYTTLIYGFCLLGQL 201
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A +L++EM +K + P + Y +I + G +++ + ++ M +G + V + +
Sbjct: 202 MGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTL 261
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Y E+ M G+ +V +YN ++N
Sbjct: 262 MDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMING 299
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ---------ALKSMISGL 199
V+ Y +L+D+ CK NQ ++ ++++++K + ++I GL
Sbjct: 360 VVTYTSLLDALCK--------------NQNLDKATALFMKMKERGIQPTMYTYTALIDGL 405
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C+ G+ A+ L + + VKG + Y +I G + G+ ++ I ++ME +G +
Sbjct: 406 CKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNA 465
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
V +++ S + +E + L +M G+
Sbjct: 466 VTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 496
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/238 (20%), Positives = 94/238 (39%), Gaps = 13/238 (5%)
Query: 66 ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG 125
++ P + N + L D +L + A+ LY + F I F G
Sbjct: 145 STRPNVVMYNTIIDGLCKD----KLVNEAYDLYSEMDARGIFPDAITYTTLIYGFC-LLG 199
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
Q A +L+ E + K V Y LI++ CK + + + A V + +
Sbjct: 200 QLMGAFSLLDEMILK---NINPGVYIYNILINALCKEGNVKEAKNLLA-----VMTKEGI 251
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+++ G C +G+ A+ + M G+ P+ + Y +I G + +++
Sbjct: 252 KPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMN 311
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +M DTV N ++ ++ + + +M G P V TY S+L++
Sbjct: 312 LLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 369
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ-----ALKSMISGLCEMGQPH 206
Y +LID CK R+ +N + ++ + Q S++ LC+
Sbjct: 328 YNSLIDGLCKS----------GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLD 377
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L +M+ +G++P+ + Y +I G + G L++ + + + G +D +++
Sbjct: 378 KATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMI 437
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
S + KM+D+G IP +V T+ ++ S
Sbjct: 438 SGLCKEGMFDEALAIKSKMEDNGCIPNAV-TFEIIIRS 474
>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
Japonica Group]
Length = 629
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FC+ K+ + Y L ++ + +++SG C+ G + L
Sbjct: 391 YNILIAGFCR---KKRLHEAYELLQEM--KEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +M G +PS + +++GY ++G +++ RI+ M+ G + V N ++
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
++ + +MK+ +P +V T+N ++L+ L + P EL + +
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFN----------ALLKGLRDKNMPEKAFELMDQMR 555
Query: 332 EEEVSVVKELEDSSVLDEAMKW 353
EE D +D M+W
Sbjct: 556 EERC-----FPDYVTVDVLMEW 572
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ L K G+ +EA + + +S + V + C LID+FC+ + Y +
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNC-LIDAFCRVGN---ISMAYELVE 270
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV------------------- 217
++ N + L +++ GLC G+ A E R
Sbjct: 271 KMENEGVPQNI--VTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGAL 328
Query: 218 ------------------KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
+G P Y +I G + G LED + + M+ G ++DT
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-SC 304
N++++ + L LQ+MK+ GI V TYN++L+ SC
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y L++ CK D L+ + + L +++ GLC+ G+
Sbjct: 169 RPDVVTYGILVNGLCKAGR---VGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRV 225
Query: 206 HEAENLIEEM--RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
EA +E+ V G P+ Y C+I + R+G + +V +ME++G + V N
Sbjct: 226 QEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLN 285
Query: 264 MVLSS 268
++
Sbjct: 286 TIVGG 290
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCI 230
AR+ L+ +SV +++GLC+ G+ +A +++ M + L+ P +
Sbjct: 156 ARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTV 215
Query: 231 IYGYGRLGLLEDMERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ G + G +++ V Q S G +TV N ++ ++ +S ++KM++
Sbjct: 216 VDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENE 275
Query: 289 GIPFSVRTYNSVLNS 303
G+P ++ T N+++
Sbjct: 276 GVPQNIVTLNTIVGG 290
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 60/107 (56%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+C +G+ EA+ + EEMR +GL P+ F Y +I G+ +LG ++ + I+ +M S+
Sbjct: 681 SLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILLEMSSN 740
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
G R + + +++ Y + L +M +GI TYN++
Sbjct: 741 GIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNAL 787
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++GQ +++ EM G+ P+ Y +I GY +LG +++ ++N+M +
Sbjct: 716 ALIGGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRN 775
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLN 302
G DTV N + Y EL+ + L + G+P TYN++++
Sbjct: 776 GIAPDTVTYNALQKGYCKERELT-VTLQSDHKSNIGLPLEEEITYNTLIH 824
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 13/166 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V Y L++ +CK D + L+ + V SS VY +I+ C +G E
Sbjct: 606 VYTYALLLEGYCKADRIEDAVKFFKNLDYEKVELSSVVY------NILIAAYCRIGNVTE 659
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L + M+ +G+ P+ Y +I+G +G +++ + I +M ++G + C ++
Sbjct: 660 AFKLRDAMKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALI- 718
Query: 268 SYGDHNELSRMVL---WLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G H +L +M + L +M +GI + TY +++ + +M
Sbjct: 719 --GGHCKLGQMDIVGSILLEMSSNGIRPNKITYTIMIDGYCKLGNM 762
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 55/113 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GL +MG+ + L+ E + G P+ + Y ++ GY + +ED + ++ +
Sbjct: 577 LMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFKNLDYEK 636
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ +V N+++++Y ++ MK GI + TY+S+++ I
Sbjct: 637 VELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCI 689
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 72/155 (46%), Gaps = 3/155 (1%)
Query: 165 KRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+RG ++ + L Q++ + + R + ++I G C+ G+ EA L EEM + +P
Sbjct: 513 ERGNMEEVFEVLKQML--EKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPD 570
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ Y ++ G +G ++D+ R++++ + G + ++L Y + + V + +
Sbjct: 571 TYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFFK 630
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
+ + S YN ++ + I ++ + D
Sbjct: 631 NLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRD 665
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLCE G E ++++M KGL Y +I+G + G +E+ ++ +M
Sbjct: 506 ALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQ 565
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ DT N ++ D ++ + L + K+ G +V TY +L
Sbjct: 566 EFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLL 613
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I G C G EA + +EM +KG++P+ + ++ G+ R +E E+++ +
Sbjct: 362 VFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYI 421
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSR 277
S G V NM + SY H + R
Sbjct: 422 LSSGLSV-----NMDVCSYVIHRLMER 443
>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 763
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/256 (25%), Positives = 105/256 (41%), Gaps = 20/256 (7%)
Query: 56 AASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKL 113
AA R++ + + P + N L + L ++ L E F +N
Sbjct: 269 AAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNT-- 326
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
+IA K G + AE +++ + G E Y +LID C H+ +
Sbjct: 327 ---LIAGYCKGGMVQLAERILVNAVFN-GFVPDEFT--YRSLIDGLC-HEGETN------ 373
Query: 174 RLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
R L N + +K + ++I GL G EA L EM KGL P + ++
Sbjct: 374 RALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILV 433
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G ++G + D + +V M S G D N+++ Y ++ + L M D+G+
Sbjct: 434 NGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVD 493
Query: 292 FSVRTYNSVLNS-CST 306
V TYNS+LN C T
Sbjct: 494 PDVYTYNSLLNGLCKT 509
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 135 LETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
L L+ + S+ E+ V+ YC ++ F + + K D+ Y +++ S S+ +
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFK---DEGYELFGKMLASGVSLCL--STFN 220
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ LC+ G E E L++++ +G+ P+ F Y I G + G L+ R+V ++
Sbjct: 221 KLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQ 280
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + D V N ++ +++ ++L K+ + G+ TYN+++
Sbjct: 281 GPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLI 328
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 427 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 486
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M +G D N +L+ ++ ++ + M + G ++ T+N +L S
Sbjct: 487 MMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLES 540
>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g19440, chloroplastic; Flags: Precursor
Length = 838
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+ + + EA+ L EEMR++GLEP+ F Y +I GYG+LG + +E ++ +M S
Sbjct: 698 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 757
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +++ Y ++ L +M++ GI TY +
Sbjct: 758 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 170 DTYARLNQLVN--------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y +L Q+V S +V+ + MI G G EA L+ EMR KG+
Sbjct: 736 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 795
Query: 222 PSGFEYKCIIYGYGRLG 238
P YK IYGY + G
Sbjct: 796 PDSITYKEFIYGYLKQG 812
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++GQ + E L+ EM K + P+ Y +I GY R G + + R++N+M
Sbjct: 733 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 792
Query: 254 GTRVDTVCSNMVLSSY 269
G D++ + Y
Sbjct: 793 GIVPDSITYKEFIYGY 808
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK ++++ + + V ++I GL G+ EA
Sbjct: 273 VYLFTTAINAFCKGGKVEEAVKLFSKMEE-----AGVAPNVVTFNTVIDGLGMCGRYDEA 327
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M +G+EP+ Y ++ G R + D ++ +M G + + N ++ S
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 387
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L++ + M G+ + TYN+++
Sbjct: 388 FIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 422
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-------------- 234
R + ++ISG C + EA ++EM +GL+P + Y +I G
Sbjct: 553 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 612
Query: 235 --GRLGLLEDM-------------------ERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
R G+L D+ + ++M S + +TV N ++ +Y
Sbjct: 613 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 672
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
LS + + MK GI + TY S++ S I
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSII 706
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y NLIDSF + S + + +++ ++ +SS Y ++I G C+ GQ
Sbjct: 378 VIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTY------NTLIKGYCKNGQADN 431
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ-----MESDGTRVDTVCS 262
AE L++EM G + + +I + + R V + M G + T+ S
Sbjct: 432 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 491
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L +G H++ + LW Q + + G RT N++L+
Sbjct: 492 G--LCKHGKHSK--ALELWFQFL-NKGFVVDTRTSNALLHG 527
>gi|302768589|ref|XP_002967714.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
gi|300164452|gb|EFJ31061.1| hypothetical protein SELMODRAFT_63558 [Selaginella moellendorffii]
Length = 384
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G+ + L +EM+ KG P+ + Y +I GYGR GL ++ + ++M+
Sbjct: 93 NLIKEYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGV 152
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D N+ ++ YG L M L +M G+P TYN++L+
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLD 201
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G EA L +EM G Y I YG+ GLLEDMER++++M++
Sbjct: 128 ALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTK 187
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +L Y + + L++M ++G ++ TYN +L+S
Sbjct: 188 GVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSS 237
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L E ++ KG+ P+ Y ++ YGR GL + ++ ++M G + + ++
Sbjct: 246 EATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLI 305
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
SYG H + Q M+ SGI + Y +++++
Sbjct: 306 ESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L+E M+ G +P Y C++ G G LE E+I++ M+ D + V ++
Sbjct: 37 ALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKRDKVSANLVTYTNLIK 96
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + L Q+MKD G + TYN+++
Sbjct: 97 EYANTGRLQDCRKLFQEMKDKGESPNSWTYNALIQG 132
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC+ + EA + E++ GL P Y +I G+ R GL ++++ I+ +ME +G
Sbjct: 454 VINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNG 513
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN---SVLNSCSTIMSML 311
+ + N+++ + N++S +V ++++M G F T +VL +I+ M+
Sbjct: 514 CPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVDMI 573
Query: 312 QD 313
D
Sbjct: 574 PD 575
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 99/212 (46%), Gaps = 12/212 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L+ ++ E + N + ++ L K+G E+ TL L + + G+ + + V Y
Sbjct: 151 AVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEK--TLSLLRIMEQGNTKPD-VRTYS 207
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ID+ CK + D LN++ N +++ S+I GLC++GQ + + L
Sbjct: 208 IVIDALCKDIN---LDAAINLLNEMKQKNIPPNIF----TYNSLIDGLCKLGQWEKVKTL 260
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM + P+ + +I G + G +ED + ++ M G D + + ++ Y
Sbjct: 261 LSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCL 320
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ R ++D GI ++ +Y+ ++N
Sbjct: 321 RGQVDRARRVFNVLRDKGIKPNIFSYSILING 352
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y +LID CK ++ L+++VN + + V +I GLC+ G+ +A
Sbjct: 238 IFTYNSLIDGLCKLGQ---WEKVKTLLSEMVNLNINPNV--HTFSILIDGLCKEGKVEDA 292
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++ M KG+EP Y I+ GY G ++ R+ N + G + + +++++
Sbjct: 293 DEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILING 352
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y L++ + ++ G+ TY+++L+
Sbjct: 353 YCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHG 387
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 92/205 (44%), Gaps = 10/205 (4%)
Query: 101 ITEESWFQWNPKL--VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
++E NP + + +I L K+G+ E+A+ ++ + K E +++ Y ++D
Sbjct: 261 LSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEK--GVEPDIIT-YSAIMDG 317
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
+C RG D R+ ++ + + +I+G C+ +A L E+ K
Sbjct: 318 YCL----RGQVDRARRVFNVL-RDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQK 372
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL+P Y I++G +G + D ++I ++M G D + +L Y + +
Sbjct: 373 GLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEA 432
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
+L K++ + ++ Y V+N
Sbjct: 433 MLLFSKLERNREDTNISFYTVVING 457
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 51/242 (21%), Positives = 99/242 (40%), Gaps = 52/242 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
+ Y LI+ +CK + A+ QL S +K + +++ GL E+G+
Sbjct: 343 IFSYSILINGYCKKKN-------LAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIG 395
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED-------MER-------------- 245
+A+ + +EM G P + +++GY + GL+E+ +ER
Sbjct: 396 DAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVI 455
Query: 246 --------------IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
I ++ S G D N++++ + + L+KM+D+G P
Sbjct: 456 NGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCP 515
Query: 292 FSVRTYNSVL------NSCSTIMSMLQDLNSNDFPLSILELTEVLN--EEEVSVVKELED 343
+ TYN ++ N S I+S ++++ F ++N +E S+V + D
Sbjct: 516 ANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVDMIPD 575
Query: 344 SS 345
S
Sbjct: 576 HS 577
>gi|302761794|ref|XP_002964319.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
gi|300168048|gb|EFJ34652.1| hypothetical protein SELMODRAFT_63559 [Selaginella moellendorffii]
Length = 384
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G+ + L +EM+ KG P+ + Y +I GYGR GL ++ + ++M+
Sbjct: 93 NLIKEYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQGYGRKGLFKEALELYDEMDGV 152
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D N+ ++ YG L M L +M G+P TYN++L+
Sbjct: 153 GCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTKGVPPDQVTYNTLLD 201
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G EA L +EM G Y I YG+ GLLEDMER++++M++
Sbjct: 128 ALIQGYGRKGLFKEALELYDEMDGVGCAKDVHTYNIAIAMYGKRGLLEDMERLLDEMDTK 187
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +L Y + + L++M ++G ++ TYN +L+S
Sbjct: 188 GVPPDQVTYNTLLDVYAKKSYFVKAHEILREMTEAGYRPNIWTYNIMLSS 237
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L E ++ KG+ P+ Y ++ YGR GL + ++ ++M G + + ++
Sbjct: 246 EATQLFENLKSKGVVPNIVTYSAMLSLYGRHGLYTEAAKLWDEMIEAGCIPCIIAYSGLI 305
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
SYG H + Q M+ SGI + Y +++++
Sbjct: 306 ESYGHHGMYQEALACFQDMRKSGIVPDTKIYTALMDA 342
Score = 45.1 bits (105), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L+E M+ G +P Y C++ G G LE E+I++ M+ D + V ++
Sbjct: 37 ALRLLEVMKESGKKPDEILYNCLVNGLVNSGRLEAAEKILDDMKQDKVSANLVTYTNLIK 96
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + L Q+MKD G + TYN+++
Sbjct: 97 EYANAGRLQDCRKLFQEMKDKGESPNSWTYNALIQG 132
>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +I K+G EA L E + + V Y +LI+ FC H D+K
Sbjct: 253 NVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN---VFTYNSLINGFCIHGCLGDAK 309
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD + S + ++I+G C+ + + L EM +GL F
Sbjct: 310 YMFD---------LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF 360
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+GY + G L +++ N+M G D V N++L ++ ++ + ++ ++ +
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420
Query: 286 KDSGIPFSVRTYNSVLNS-CST 306
+ S + + TYN ++ C T
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRT 442
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC + EA L + KG++P Y +I G R GL + +++ +M+ DG
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g59900
gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 907
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 38/242 (15%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
A L R+ + F +P L +I L K + EAE L+ + + K+G R ++
Sbjct: 351 ALNLVKRVVD---FGVSPNLFVYNALIDSLCKGRKFHEAE-LLFDRMGKIGLRPNDVT-- 404
Query: 152 YCNLIDSFC---KHDSKRGF----DDTYARL-----NQLVN--------SSSSVYVKRQA 191
Y LID FC K D+ F DT +L N L+N S++ ++
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 192 LK----------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
K S++ G C G+ ++A L EM KG+ PS + + ++ G R GL+
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D ++ N+M + + V N+++ Y + ++S+ +L++M + GI +Y ++
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 302 NS 303
+
Sbjct: 585 HG 586
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ YC L+ CK F+ +++++ S A+ S++ GL + G+ EA
Sbjct: 297 VVTYCTLVYGLCKVQE---FEIGLEMMDEMLCLRFSP--SEAAVSSLVEGLRKRGKIEEA 351
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL++ + G+ P+ F Y +I + + E + ++M G R + V ++++
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L + +L +M D+G+ SV YNS++N
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+ +I GLC GQ EA+ ++ + E + Y +++G+ R G LE+ + +M
Sbjct: 581 RPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQ 640
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D VC +++ H + L++M D G+ Y S++++
Sbjct: 641 RGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDA 691
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R MI G CE G +A ++EM KG+ P + Y+ +I+G G + + V+
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ +C +L + +L + Q+M G+ + Y +++
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 42/197 (21%)
Query: 150 LFYCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y ++ID+ SK G F + + + ++N ++I+GLC+ G +EA
Sbjct: 683 VIYTSMIDA----KSKTGDFKEAFGIWDLMINEGC--VPNEVTYTAVINGLCKAGFVNEA 736
Query: 209 ENLIEEMR-----------------------------------VKGLEPSGFEYKCIIYG 233
E L +M+ +KGL + Y +I G
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRG 796
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ R G +E+ ++ +M DG D + +++ N++ + + M + GI
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
Query: 294 VRTYNSVLNSCSTIMSM 310
YN++++ C M
Sbjct: 857 RVAYNTLIHGCCVAGEM 873
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ + HEAE L + M GL P+ Y +I + R G L+ + +M
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
G ++ N +++ + ++S ++ +M + + +V TY S++ CS
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484
>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
Length = 687
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 8/200 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+ES + N + ++ K G+ EA ++ + L S + V+ YC LID CK
Sbjct: 460 DESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILD---SGFQPNVITYCALIDGLCKA 516
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S D+ + N++ + V QA +++ GLC+ G +EA L EM KG+
Sbjct: 517 GS---IDEAISHFNKMRDLGLDPNV--QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSL 571
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y ++ GY + G L D + +M G ++D C +S + + N +
Sbjct: 572 DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVF 631
Query: 283 QKMKDSGIPFSVRTYNSVLN 302
+M GI YN +++
Sbjct: 632 SEMIGHGIAPDRAVYNCLIS 651
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA +L M+ G P + +I GYG+ G L+++E++V +M G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N +++ + + + MK G+ +V T+++ +++
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDA 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 46 LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105
L LA R + RL + A P N + L + SL + R+ E
Sbjct: 165 LRLARDRSGRLVRRLFEQLPA--PNVFTFNIVIDFLCKEGELAEARSL----FSRMKEMG 218
Query: 106 WFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
P +V +I K G+ +E E L+ E + + G + V+ Y LI+ FCK
Sbjct: 219 CL---PDVVTFNSLIDGYGKCGELDEVEQLV-EEMRRSGCKAD--VVTYNALINCFCKFG 272
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+A + + V + + C+ G EA L +MRV+G+ +
Sbjct: 273 RMETAYGYFAAMKR-----EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
F Y C+I G + G L+D ++++M G ++ V +++ +++ L+
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
M+ +G+ + Y ++++
Sbjct: 388 MMEKAGVRANELLYTTLIHG 407
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G EA + +MR GL+P+ Y ++ G + G L + ++ N+M
Sbjct: 508 ALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHK 567
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V +L Y L KM DSG+ + Y ++
Sbjct: 568 GMSLDKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISG 617
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+S FQ N +I L K G +EA + + LG V Y L+D CK+
Sbjct: 496 DSGFQPNVITYCALIDGLCKAGSIDEAISH-FNKMRDLGLDPN--VQAYTALVDGLCKNG 552
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
++ N++V+ S+ + +++ G + G H+A L +M GL+
Sbjct: 553 C---LNEAVQLFNEMVHKGMSL--DKVVYTALLDGYLKQGNLHDAFALKAKMIDSGLQLD 607
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
F Y C I G+ L ++ + + ++M G D N ++S Y
Sbjct: 608 LFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNCLISKY 653
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 85/186 (45%), Gaps = 11/186 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK DD L+++V + V + ++ GLC+ + EAE++
Sbjct: 331 YTCLIDGTCKAGR---LDDAIVLLDEMVRQGVPLNVVTYTV--LVDGLCKERKVAEAEDV 385
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M G+ + Y +I+G+ E ++++M++ G +D ++ +
Sbjct: 386 LRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCN 445
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFPLSILE 325
++L L KM +SG+ + Y +++++C ++MLQ + + F +++
Sbjct: 446 VHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVIT 505
Query: 326 LTEVLN 331
+++
Sbjct: 506 YCALID 511
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + ++ L K G EA L E + K S ++ + Y L+D + K +
Sbjct: 537 NVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDK---VVYTALLDGYLKQGN---LH 590
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D +A ++++S + + ISG C + EA + EM G+ P Y C
Sbjct: 591 DAFALKAKMIDSG--LQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVYNC 648
Query: 230 IIYGYGRLGLLEDMERIVNQME 251
+I Y +LG LE+ + ++ME
Sbjct: 649 LISKYQKLGNLEEAISLQDEME 670
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+ID CK ++R+ ++ V S+I G + G+ E E L+EE
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVV-----TFNSLIDGYGKCGELDEVEQLVEE 248
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
MR G + Y +I + + G +E M+ +G + V + + ++
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN-SCST-----IMSMLQDLNSNDFPLSILELTE 328
+ + +M+ G+ + TY +++ +C + +L ++ PL+++ T
Sbjct: 309 VREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTV 368
Query: 329 VLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380
+++ E V++ +E + V + + T L +HG + L + E
Sbjct: 369 LVDGLCKERKVAEAEDVLRMMEKAGVRANELLY----TTL-IHGHFMNKNSEKALGLLSE 423
Query: 381 MRNR 384
M+N+
Sbjct: 424 MKNK 427
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 62/275 (22%), Positives = 119/275 (43%), Gaps = 24/275 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS-FCKHDSKRGFDDTYARLNQLV 179
L K+ + EAE +L + K G R EL+ Y LI F +S++ N+ +
Sbjct: 373 LCKERKVAEAED-VLRMMEKAGVRANELL--YTTLIHGHFMNKNSEKALGLLSEMKNKGL 429
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
S+Y ++I GLC + + EA++L+ +M GLEP+ Y ++ + G
Sbjct: 430 ELDISLY------GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + ++ ++ G + + + ++ + + KM+D G+ +V+ Y +
Sbjct: 484 VPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAYTA 543
Query: 300 VL-----NSC-STIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKE--LEDSSVLDEAM 351
++ N C + + + ++ L + T +L+ +K+ L D+ L M
Sbjct: 544 LVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLD----GYLKQGNLHDAFALKAKM 599
Query: 352 KWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386
DSG +LDL + F L M E R F+
Sbjct: 600 -IDSG-LQLDLFCYTCFISGFCNLNMMPEAREVFS 632
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 19/162 (11%)
Query: 149 VLFYCNLIDSFCKH-------DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
V+ Y L+D CK D R + R N+L+ ++ +I G
Sbjct: 363 VVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT------------LIHGHFM 410
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+A L+ EM+ KGLE Y +I G + L++ + ++ +M+ G + +
Sbjct: 411 NKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYII 470
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + ++ + LQK+ DSG +V TY ++++
Sbjct: 471 YTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDG 512
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC +I F K + + + Y ++++ + +I LC+ G E+E L
Sbjct: 184 YCAVISGFYKENCQI---EAYHLFDEML--KQGICPDILTFNKLIHVLCKKGNVQESEKL 238
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ +G+ P+ F + I G R G +++ R++ + S+G D + N ++ +
Sbjct: 239 FSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCK 298
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H++L +L KM +SG+ + TYN+++N
Sbjct: 299 HSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 104/253 (41%), Gaps = 23/253 (9%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI---TEESWFQWNP 111
A+RL+ V+ +P I+ N L + H +L L+ + E + F +N
Sbjct: 270 AARLLESIVSEGLTPDVISYNTL---ICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNT 326
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDD 170
II K G + A+ ++ + + K G E Y +LI+ C D R
Sbjct: 327 -----IINGFCKAGMMQNADKILRDAMFK-GFIPDEFT--YSSLINGLCNDGDMNRAMAV 378
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
Y + + S +Y +++ GL + G +A L+++M G P + Y +
Sbjct: 379 FYEAMEKGFKHSIILY------NTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLV 432
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ G ++G L D I+N + G D N ++ Y + + + L M GI
Sbjct: 433 VNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGI 492
Query: 291 PFSVRTYNSVLNS 303
V TYN++LN
Sbjct: 493 TPDVITYNTLLNG 505
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 95/200 (47%), Gaps = 10/200 (5%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCKHDSKRGFDDTYAR 174
++I L K+G +E+E L SK+ R LF N+ I C+ +G D AR
Sbjct: 221 KLIHVLCKKGNVQESEKL----FSKVMKRGVCPNLFTFNIFIQGLCR----KGAIDEAAR 272
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L + + S + + ++I G C+ + EAE + +M G+EP+ F Y II G+
Sbjct: 273 LLESI-VSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGF 331
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G++++ ++I+ G D + +++ + +++R + + + G S+
Sbjct: 332 CKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSI 391
Query: 295 RTYNSVLNSCSTIMSMLQDL 314
YN+++ S +LQ L
Sbjct: 392 ILYNTLVKGLSKQGLVLQAL 411
>gi|168000162|ref|XP_001752785.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695948|gb|EDQ82289.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 482
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 82/179 (45%), Gaps = 8/179 (4%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
EEA + E ++ S R + Y L+D++ K G + + + Q
Sbjct: 297 EEAHVVFREMVA---SGLRPSRIAYNTLLDAYAKCKEVEGAESLFKSMGQ-----DRCRP 348
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++ ++++ G +AE L++ M+ GLEP+ Y ++ GY + + M +
Sbjct: 349 DIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTSVHDINAMLQTF 408
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++ G + ++ +++ ++G + + W +KM DSG P R+ +++++C T
Sbjct: 409 EDLQKAGIKPNSTIFTLLVRTFGQQEDFESALSWFKKMLDSGCPADQRSRAALMDACQT 467
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 6/162 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ES 252
S++ G AE++ +EM G P+ Y+ I + D ERI + ES
Sbjct: 147 SLLEAHARTGNFVRAESIYQEMLKTGPAPTEVTYQVYINALCKAERFNDAERIFKCLDES 206
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM---S 309
+ D N++L +YG + S ++MK +G+P +V T+NS++ T+ +
Sbjct: 207 AEAKPDARLYNLMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEA 266
Query: 310 MLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
L+ + + ++ T ++N S + +E++ V+ M
Sbjct: 267 CLRHMQAAKIKPDVITYTGLIN--AYSKARRVEEAHVVFREM 306
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 9/189 (4%)
Query: 133 LILETLSKLGSRERELVLFY----CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
L+L T K G + LF + + +S F T A + + +K
Sbjct: 218 LMLHTYGKAGKFSEQQALFRQMKGAGVPMTVVTFNSLMAFQKTVADAEACLRHMQAAKIK 277
Query: 189 RQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ +I+ + + EA + EM GL PS Y ++ Y + +E E +
Sbjct: 278 PDVITYTGLINAYSKARRVEEAHVVFREMVASGLRPSRIAYNTLLDAYAKCKEVEGAESL 337
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL---NS 303
M D R D +L++Y + + + L++MK +G+ +V TY +++ S
Sbjct: 338 FKSMGQDRCRPDIRSYTTLLAAYANTGNMKKAERLLKRMKQAGLEPNVVTYGTLMQGYTS 397
Query: 304 CSTIMSMLQ 312
I +MLQ
Sbjct: 398 VHDINAMLQ 406
>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
Length = 814
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+ + + EA+ L EEMR++GLEP+ F Y +I GYG+LG + +E ++ +M S
Sbjct: 674 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 733
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +++ Y ++ L +M++ GI TY +
Sbjct: 734 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 781
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 170 DTYARLNQLVN--------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y +L Q+V S +V+ + MI G G EA L+ EMR KG+
Sbjct: 712 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 771
Query: 222 PSGFEYKCIIYGYGRLG 238
P YK IYGY + G
Sbjct: 772 PDSITYKEFIYGYLKQG 788
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++GQ + E L+ EM K + P+ Y +I GY R G + + R++N+M
Sbjct: 709 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 768
Query: 254 GTRVDTVCSNMVLSSY 269
G D++ + Y
Sbjct: 769 GIVPDSITYKEFIYGY 784
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK ++++ + + + V ++I GL G+ EA
Sbjct: 249 VYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVV-----TFNTVIDGLGMCGRYDEA 303
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M +G+EP+ Y ++ G R + D ++ +M G + + N ++ S
Sbjct: 304 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 363
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L++ + M G+ + TYN+++
Sbjct: 364 FIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 398
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-------------- 234
R + ++ISG C + EA ++EM +GL+P + Y +I G
Sbjct: 529 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 588
Query: 235 --GRLGLLEDM-------------------ERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
R G+L D+ + ++M S + +TV N ++ +Y
Sbjct: 589 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 648
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
LS + + MK GI + TY S++ S I
Sbjct: 649 RLSMALELREDMKHKGISPNSATYTSLIKGMSII 682
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y NLIDSF + S + + +++ ++ +SS Y ++I G C+ GQ
Sbjct: 354 VIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTY------NTLIKGYCKNGQADN 407
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ-----MESDGTRVDTVCS 262
AE L++EM G + + +I + + R V + M G + T+ S
Sbjct: 408 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 467
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L +G H++ + LW Q + + G RT N++L+
Sbjct: 468 G--LCKHGKHSK--ALELWFQFL-NKGFVVDTRTSNALLHG 503
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 21/216 (9%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAF--LDKQGQREEAETLILETLSKLGSRERELVLF 151
AF L + E + NP + I L K+G+ +EA+ L L ++K G + V+
Sbjct: 326 AFSL---LNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNL-LGVMTKEGVKPN--VVT 379
Query: 152 YCNLIDSFC----KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y L+D +C H++K+ F +A + VN S Y MI+GLC+ E
Sbjct: 380 YSTLMDGYCLVGEVHNAKQIF---HAMVQTEVNPSVCSY------NIMINGLCKGKSVDE 430
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A NL+ EM K + P+ Y +I G + G + ++ ++ G D + +L
Sbjct: 431 AMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLD 490
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L + + KMK+ GI + TY ++++
Sbjct: 491 GLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDG 526
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 68/158 (43%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +ID CK D Y +N S ++ ++I G C GQ
Sbjct: 269 RPDVVMYNTIIDGLCKDKLVNEAYDFYTEMN-----SRGIFPDVITYSTLICGFCLAGQL 323
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A +L+ EM +K + P + Y +I + G L++ + ++ M +G + + V + +
Sbjct: 324 MGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTL 383
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Y E+ M + + SV +YN ++N
Sbjct: 384 MDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMING 421
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L+D CK+ + D A ++ + + ++I GLC+ + A
Sbjct: 482 VITYTSLLDGLCKN---QNLDKAIALFMKM--KERGIQPNKYTYTALIDGLCKGARLKNA 536
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L + + VKG + Y +I G + G+L++ + ++ME +G D V +++ S
Sbjct: 537 QKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRS 596
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
+ +E + L +M G+
Sbjct: 597 LFEKDENDKAEKLLHEMIAKGL 618
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 68/153 (44%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LID CK D L+ + + S++ GLC+ +A L
Sbjct: 450 YNSLIDGLCKSGRITSALDLMKELHHRGQPADVI-----TYTSLLDGLCKNQNLDKAIAL 504
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M+ +G++P+ + Y +I G + L++ +++ + G +D N+++
Sbjct: 505 FMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCK 564
Query: 272 HNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
L + KM+D+G IP +V T+ ++ S
Sbjct: 565 EGMLDEALAMKSKMEDNGCIPDAV-TFEIIIRS 596
>gi|357499677|ref|XP_003620127.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495142|gb|AES76345.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 412
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/340 (20%), Positives = 139/340 (40%), Gaps = 52/340 (15%)
Query: 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP 88
Q L +QG+ + L + AS+ SK + P F LLS H
Sbjct: 83 QFLDGDDVQQGEDVVPQL-----DEDDLASQAASKQLPDQPPFPGGPLNISLLSSYALH- 136
Query: 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
+A PL+ E N K ++A + KQG A T
Sbjct: 137 ----VALPLWYNANNEG----NVKEAKNVLAMMMKQGINPNAVT---------------- 172
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y +L+D +C + ++ + S V + MI+G C++ EA
Sbjct: 173 ---YSSLMDGYCLVNEVNNAKGIFSTM-----SLRGVTANVWSYNIMINGFCKIKMTDEA 224
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL EEM + L P Y +I G + G + ++V++M G D + + +L +
Sbjct: 225 MNLFEEMHCRKLIPDVVTYNSLINGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDA 284
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIMSMLQDLNSNDFPLS 322
++++ + + L+ +KD GI ++ TY +++ C ++ +DL + ++
Sbjct: 285 LCKNHQVDKAIALLKNLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNIT 344
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWD 354
+ T +++ +E ++++ +++D+S A+ ++
Sbjct: 345 VNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYE 384
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +L+D+ CK+ D A L L + +I GLC+ G+ +A
Sbjct: 275 IITYSSLLDALCKNHQ---VDKAIALLKNL--KDQGIRPNMYTYTILIDGLCKGGRLEDA 329
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
N+ E++ VKG + Y +I+G+ GL ++ ++++M+ + + + +++ S
Sbjct: 330 HNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCFPNALTYEIIIRS 389
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
D++E + L++M G+
Sbjct: 390 LFDNDENDKAENLLREMITRGL 411
>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 727
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C L+D CK SKR D NQLV S + V + +I G C + EA NL+
Sbjct: 399 CILLDGLCK--SKR-LDQAILLFNQLVESGLTPDVWSYTI--LIHGCCTSRRMGEAMNLL 453
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+M +K L P Y C+I G R G + + R++N+M G DT+ +++L +
Sbjct: 454 RDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKK 513
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L V +M G+ V Y +++
Sbjct: 514 QHLDEAVFLFNQMIKRGLEPDVMCYTIMIDG 544
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +ID C++ GF D+ + N+++ + V S+I GLC +G+ E
Sbjct: 185 VVMYSIVIDCLCRN----GFVDEGFEFYNEMM--GNGVCPNEFTYGSLIRGLCGVGKFLE 238
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
L++EM +GL+ S + + +I G + G+L + + ++M + G + V ++
Sbjct: 239 GFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMG 298
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + + G V TYN ++
Sbjct: 299 GYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHG 334
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
I G C++G+ +A + +EM +G+ P+ Y +I + G + IV M G
Sbjct: 331 FIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG 390
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D V ++L L + +L ++ +SG+ V +Y +++ C T M + +
Sbjct: 391 LTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAM 450
Query: 315 N 315
N
Sbjct: 451 N 451
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC G+ A L+ EM VKG P Y ++ + L++ + NQM G
Sbjct: 471 LIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRG 530
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D +C +++ Y + + ++M + + TY + N+
Sbjct: 531 LEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTILFNA 579
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 4/119 (3%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
SVYV +I GLC+ G EA + +EM +G EP+ ++ GY G ++
Sbjct: 254 SVYV----FTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMA 309
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + + G + D N+ + Y + V +M G+ ++ TYNS+++
Sbjct: 310 RELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLID 368
>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 825
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+ + + EA+ L EEMR++GLEP+ F Y +I GYG+LG + +E ++ +M S
Sbjct: 685 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 744
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +++ Y ++ L +M++ GI TY +
Sbjct: 745 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 792
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 170 DTYARLNQLVN--------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y +L Q+V S +V+ + MI G G EA L+ EMR KG+
Sbjct: 723 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 782
Query: 222 PSGFEYKCIIYGYGRLG 238
P YK IYGY + G
Sbjct: 783 PDSITYKEFIYGYLKQG 799
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++GQ + E L+ EM K + P+ Y +I GY R G + + R++N+M
Sbjct: 720 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 779
Query: 254 GTRVDTVCSNMVLSSY 269
G D++ + Y
Sbjct: 780 GIVPDSITYKEFIYGY 795
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK ++++ + + V ++I GL G+ EA
Sbjct: 260 VYLFTTAINAFCKGGKVEEAVKLFSKMEE-----AGVAPNVVTFNTVIDGLGMCGRYDEA 314
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M +G+EP+ Y ++ G R + D ++ +M G + + N ++ S
Sbjct: 315 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 374
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L++ + M G+ + TYN+++
Sbjct: 375 FIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 409
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-------------- 234
R + ++ISG C + EA ++EM +GL+P + Y +I G
Sbjct: 540 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 599
Query: 235 --GRLGLLEDM-------------------ERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
R G+L D+ + ++M S + +TV N ++ +Y
Sbjct: 600 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 659
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
LS + + MK GI + TY S++ S I
Sbjct: 660 RLSMALELREDMKHKGISPNSATYTSLIKGMSII 693
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y NLIDSF + S + + +++ ++ +SS Y ++I G C+ GQ
Sbjct: 365 VIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTY------NTLIKGYCKNGQADN 418
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ-----MESDGTRVDTVCS 262
AE L++EM G + + +I + + R V + M G + T+ S
Sbjct: 419 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 478
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L +G H++ + LW Q + + G RT N++L+
Sbjct: 479 G--LCKHGKHSK--ALELWFQFL-NKGFVVDTRTSNALLHG 514
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 63/117 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++GLC+ G+ +E +EM +KG P+ Y +I + R +E+ +++ +M +
Sbjct: 473 SVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQE 532
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G D V N ++ + + +L L QK+++ G + T+N+++ + S ++M
Sbjct: 533 GLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNM 589
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEA 208
YC+LI+ C D +R +L N + + +K + S++ GLC G A
Sbjct: 331 YCSLINGLCAEGDVERAL--------ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 382
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G P Y +I G ++G + D ++N G D N ++
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y +L + +++M + GI TYNSVLN
Sbjct: 443 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNG 477
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ P EA + + M +G P F Y II GY ++ ++++ ++
Sbjct: 263 TLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK 322
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C--STIMSM 310
G D V +++ ++ R + + + GI + YNS++ C I+
Sbjct: 323 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 382
Query: 311 LQDLN 315
LQ +N
Sbjct: 383 LQVMN 387
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I+GLC+MG +A ++ + +KG P F + +I GY + L+ ++V +
Sbjct: 399 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 458
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCST 306
M G DT+ N VL+ +++ + Q+M G + TYN ++ N C +
Sbjct: 459 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRS 516
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 105/255 (41%), Gaps = 13/255 (5%)
Query: 99 MRITEESW-FQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL 155
+++ E W + P + ++ L K G+ E E + K G + Y L
Sbjct: 453 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILK-GCHPNPIT--YNIL 509
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
I++FC+ + +++Q ++ + ++I G C G A L +++
Sbjct: 510 IENFCRSNKMEEASKVIVKMSQ-----EGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 564
Query: 216 RVKGLEPSGFEYKCIIYGY-GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
KG + + +I + G+L + E+I ++M S G R D+ +++
Sbjct: 565 EEKGYSATADTFNTLIGAFSGKLNM-HMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 623
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEE 334
+ R + L +M G S+ T+ V+NS + + Q + + I + EV++
Sbjct: 624 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVVDTIL 683
Query: 335 VSVVKELEDSSVLDE 349
+ KE+ +L E
Sbjct: 684 NADKKEIAAPKILVE 698
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 11/161 (6%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
C L HD+++ FD Q++++ V+ A ++ LC+ G EA L+
Sbjct: 162 CGLYAHGHTHDARQLFD-------QMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLL 212
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++ +G+ + F Y I G G L + R+V+ M + D V N ++
Sbjct: 213 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVP-DVVTYNTLIRGLCKK 271
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ + +L++M + G TYN++++ I SM+Q+
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKI-SMVQE 311
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++ ++I+GLC G+ EA L EM +G EP+ Y II G + G
Sbjct: 153 GIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMA 212
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +ME +G + D V N ++ S ++ + +L +M D GIP +V TYN +++
Sbjct: 213 VDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHG 272
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 88/188 (46%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I L +G+ +EA +E +++ R E V+ Y +I+ CK + D + ++
Sbjct: 164 LINGLCNEGKIKEA----VELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKM 219
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
Q N V ++I LC+ ++A + EM +G+ P+ F Y C+++G+
Sbjct: 220 EQ--NGCKPDVV---TYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFC 274
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
LG L + R+ +M DTV +++ +S L + M + G+ ++
Sbjct: 275 ILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNIS 334
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 335 TYNALMDG 342
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 78/176 (44%), Gaps = 26/176 (14%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K+G EA L+ ET+++ G + Y L+D +C L +L+N
Sbjct: 308 LCKEGMVSEAR-LVFETMTEKGVEPN--ISTYNALMDGYC--------------LQRLMN 350
Query: 181 SSSSVY--VKRQALKS-------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ V+ + RQ +I+G C+ + EA++L+ EM K L P Y ++
Sbjct: 351 EAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 410
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
G + G ++ I +M S G + V +++L + H L + L+ M++
Sbjct: 411 QGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQE 466
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMG 203
R V + + SF K K+ + + NQ L + +VY +L +I+ LC +
Sbjct: 85 RPSVAEFGKFLGSFAK---KKQYSTVVSLCNQMDLFGVTHNVY----SLNVLINCLCRLN 137
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
A +++ +M G+ P+ + +I G G +++ + N+M G + + N
Sbjct: 138 HVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYN 197
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ S V +KM+ +G V TYN++++S
Sbjct: 198 TIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDS 237
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +IDS CK R +D L+++++ V M+ G C +GQ +EA
Sbjct: 228 VVTYNTIIDSLCK---DRLVNDAMEFLSEMLDRGIPPNVF--TYNCMVHGFCILGQLNEA 282
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +EM + + P ++ G + G++ + + M G + N ++
Sbjct: 283 TRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDG 342
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ + M G V +YN ++N
Sbjct: 343 YCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILING 377
>gi|10177016|dbj|BAB10204.1| maize crp1 protein-like [Arabidopsis thaliana]
Length = 680
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 86/187 (45%), Gaps = 11/187 (5%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K + D ++++ S + R ++I C+ G+ AE
Sbjct: 417 FYNVVIDTFGKFNC---LDHAMTTFDRML--SEGIEPDRVTWNTLIDCHCKHGRHIVAEE 471
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ E M +G P Y +I YG +DM+R++ +M+S G + V ++ YG
Sbjct: 472 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 531
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ + L++MK G+ S YN+++N+ + ++ + + S+ S+L
Sbjct: 532 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 591
Query: 325 ELTEVLN 331
L ++N
Sbjct: 592 ALNSLIN 598
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ + K L S+IS L + G+ EAE L EE+R G++P Y ++ GY + G L+
Sbjct: 268 ATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLK 327
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHN--ELSRMVL 280
D E +V++ME G D ++++ +Y + E +R+VL
Sbjct: 328 DAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 368
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI-LETLSKLGSRERELVLFYCNL 155
LY I E + + +LV +II K G +A L+ + + L ++ LV L
Sbjct: 227 LYKEI-ERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL 285
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
DS +++ F++ L Q S + + +A +++ G + G +AE+++ EM
Sbjct: 286 ADSGRTLEAEALFEE----LRQ-----SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 336
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P Y +I Y G E ++ +ME+ + ++ + +L+ + D E
Sbjct: 337 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 396
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++MK G+ + YN V+++
Sbjct: 397 QKTFQVLKEMKSIGVKPDRQFYNVVIDT 424
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A +EEM+ GL+PS Y +I Y + GL E M SDG + +
Sbjct: 534 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 593
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++G+ V TY +++ +
Sbjct: 594 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 634
>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 567
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 56/102 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G+C+MG+ ++A L+ + VKGL+ + + +I G R GLL+D E ++ +M+ +G
Sbjct: 443 MLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKENG 502
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ N+ + ++SR +LQ MKD G P T
Sbjct: 503 CPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGFPVDATT 544
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 56/112 (50%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-GRLGLLEDMERIVNQMES 252
+++ GLC+ G EA L EM V +EP+ Y C+I G G +G + + N+M +
Sbjct: 193 AILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVA 252
Query: 253 D-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G D +++++ + L R + M G+ +V TYNS+++
Sbjct: 253 EKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISG 304
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 79/178 (44%), Gaps = 9/178 (5%)
Query: 131 ETLILETLSKLGSRER---EL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186
E L+L S +G R EL V+ Y +LI +C + ++ + +V
Sbjct: 273 EGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNR---MEEAVRVFDLMVREGEGCL 329
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMER 245
S+I G C++ + ++A +L+ EM KGL+P F + +I G+ +G L E
Sbjct: 330 PSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAAKEL 389
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + C+ ++ Y + M L+ + M+ SG+ + YN +L+
Sbjct: 390 FITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLF-RAMEKSGLDLDIVIYNIMLDG 446
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L K+G EA L E + + E +V + C LI C G+ + N
Sbjct: 194 ILDGLCKRGLVGEALGLFYEM--GVVNVEPNVVTYNC-LIQGLCGEVG--GWREGVGLFN 248
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + + Q +++G C+ G AE+++ M G+E + Y +I GY
Sbjct: 249 EMV-AEKGIVPDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCL 307
Query: 237 LGLLEDMERIVNQM--ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+E+ R+ + M E +G V N ++ + ++++ + L +M G+ V
Sbjct: 308 RNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDV 367
Query: 295 RTYNSVLNS 303
T+ S++
Sbjct: 368 FTWTSLIGG 376
>gi|15238925|ref|NP_199046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75154282|sp|Q8L844.1|PP413_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g42310, mitochondrial; Flags: Precursor
gi|21539517|gb|AAM53311.1| maize crp1 protein-like [Arabidopsis thaliana]
gi|332007411|gb|AED94794.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 709
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K + T+ R+ S + R ++I C+ G+ AE
Sbjct: 446 FYNVVIDTFGKFNCLDHAMTTFDRM-----LSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 500
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ E M +G P Y +I YG +DM+R++ +M+S G + V ++ YG
Sbjct: 501 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 560
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ + L++MK G+ S YN+++N+ + ++ + + S+ S+L
Sbjct: 561 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 620
Query: 325 ELTEVLN 331
L ++N
Sbjct: 621 ALNSLIN 627
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ + K L S+IS L + G+ EAE L EE+R G++P Y ++ GY + G L+
Sbjct: 297 ATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLK 356
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHN--ELSRMVL 280
D E +V++ME G D ++++ +Y + E +R+VL
Sbjct: 357 DAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 397
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI-LETLSKLGSRERELVLFYCNL 155
LY I E + + +LV +II K G +A L+ + + L ++ LV L
Sbjct: 256 LYKEI-ERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL 314
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
DS +++ F++ L Q S + + +A +++ G + G +AE+++ EM
Sbjct: 315 ADSGRTLEAEALFEE----LRQ-----SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P Y +I Y G E ++ +ME+ + ++ + +L+ + D E
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 425
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++MK G+ + YN V+++
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDT 453
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A +EEM+ GL+PS Y +I Y + GL E M SDG + +
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++G+ V TY +++ +
Sbjct: 623 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 663
>gi|293335157|ref|NP_001169529.1| uncharacterized protein LOC100383403 [Zea mays]
gi|224029903|gb|ACN34027.1| unknown [Zea mays]
gi|414887232|tpg|DAA63246.1| TPA: hypothetical protein ZEAMMB73_160132 [Zea mays]
Length = 819
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ QP +A + EMR +P+ Y +I YG G+L++ ++++ME D
Sbjct: 405 SLLNAYGRSAQPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQD 464
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D + + +L++ G +L+++ + L K GI + YNS + S
Sbjct: 465 GIQPDVISISTLLTACGRCKQLTKIDIILAAAKSRGIQLNTVAYNSGIGS 514
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++++ ++ S+I + G+ EA + M+ G P Y +I Y G
Sbjct: 570 NIHLTKEVYSSVICSYVKQGKLTEAASTFNSMKETGCFPDVLTYTTLIKAYSDDGSWRRA 629
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +ME++GT+ D + + ++ + + R++ ++ MK I + + Y +++S
Sbjct: 630 WDLFKEMENNGTQPDAIVCSSLMEALNKGGQPERVLQLIEFMKQKKIQLNQKAYFEIISS 689
Query: 304 CS------TIMSMLQDLNSNDFPLSILELTEVLN 331
C+ T +++ L+S+ +S L +LN
Sbjct: 690 CTMLRDWKTASQIIEHLDSSLSSISFGTLNHILN 723
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G EA + ++ GL P Y ++ YGR E + N+M +
Sbjct: 370 ALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTSLLNAYGRSAQPEKAREVFNEMRKN 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + V N ++ +YG L + L +M+ GI V + +++L +C
Sbjct: 430 ACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACG 481
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK--GLEPSGFEYKCIIYGYGRLGL 239
SS V + +I L ++G EA L MR + P Y I+Y Y G
Sbjct: 286 SSKVAPDTCTMNIVIHCLVKIGLYGEAIELFNSMRERRTTCHPDVVTYTSIMYSYSVCGQ 345
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
E+ + + + M ++G R + V N +L +Y H + + + +K +G+ + +Y S
Sbjct: 346 AENCKAVFDIMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGLRPDIVSYTS 405
Query: 300 VLNS 303
+LN+
Sbjct: 406 LLNA 409
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G EA +L+ EM G++P ++ GR L ++ I+ +S
Sbjct: 440 ALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACGRCKQLTKIDIILAAAKSR 499
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G +++TV N + SY + + ++ M+ + TYN +++ + ++
Sbjct: 500 GIQLNTVAYNSGIGSYLSLGDYKKALVLYTSMRAGNVKPDAVTYNILISGSCKLGRYVES 559
Query: 314 LNSNDFPLSILELTEVLNEEEVSVV 338
L F +L+L L +E S V
Sbjct: 560 LK---FFEDMLDLNIHLTKEVYSSV 581
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 83/182 (45%), Gaps = 11/182 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+F+ LID+F K + + Y + + SV+ S+I+G C G+ +A
Sbjct: 790 VIFFTALIDTFVKEGNLLEAKNLYKEMIR-----RSVHPNILTYNSLINGFCIQGRLGDA 844
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++ + M KG P Y +I G+ + +ED ++ +M G D N ++
Sbjct: 845 KHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHG 904
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IMSMLQDLNSNDFPLS 322
Y +L+ +M D G+P + TYN +L+ C+ + M++DL N +
Sbjct: 905 YCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVD 964
Query: 323 IL 324
I+
Sbjct: 965 II 966
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 87/196 (44%), Gaps = 16/196 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +I K+G EA+ L E + + +L Y +LI+ FC D+K
Sbjct: 789 NVIFFTALIDTFVKEGNLLEAKNLYKEMIRR---SVHPNILTYNSLINGFCIQGRLGDAK 845
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD + S + ++I+G C+ + + L EM +GL F
Sbjct: 846 HMFD---------LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAF 896
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+GY + G L +++ N+M G D V N++L ++ ++ + ++ ++ +
Sbjct: 897 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDL 956
Query: 286 KDSGIPFSVRTYNSVL 301
+ + + + TYN ++
Sbjct: 957 QKNQMDVDIITYNIII 972
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 22/202 (10%)
Query: 110 NPKL---VAEIIAFLDKQGQREEAETLILETL-SKLGSRERELVLFYCNLIDSFCKHD-- 163
NP + A I AF+ KQG +EA+ L + L S +G + Y +LI+ C H
Sbjct: 238 NPDVFTFTALIDAFV-KQGNLDEAQELYKQMLQSSIGPN----TVTYNSLINGLCMHGRL 292
Query: 164 --SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
+K+ FD + +S + ++I+G C+ + + L + M +GL
Sbjct: 293 YHAKKTFD---------LMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLV 343
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
F Y +I+GY ++G L + I + M S G D + ++L + E+ ++
Sbjct: 344 GDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVK 403
Query: 282 LQKMKDSGIPFSVRTYNSVLNS 303
M+ + YN +++
Sbjct: 404 FNDMRSGEKYLGIVAYNIMIHG 425
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 87/216 (40%), Gaps = 44/216 (20%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSS 182
QG R + +++++++LG V+ Y +I+ CK+ D + Y + + +
Sbjct: 697 QGNRFQEAVSLVDSMAELGLEPN--VVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVAD 754
Query: 183 SSVYVKRQALKSMISGLCEMGQ-----------------PH------------------E 207
+ Y ++ISGLC G+ P+ E
Sbjct: 755 AVTY------NTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLE 808
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A+NL +EM + + P+ Y +I G+ G L D + + + M S G D V N +++
Sbjct: 809 AKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLIT 868
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + +M G+ TYN++++
Sbjct: 869 GFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHG 904
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L S+++G C+ + EA +L++ M GLEP+ Y +I G + L + I M
Sbjct: 687 TLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGM 746
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E G D V N ++S + + L+ M I +V + +++++
Sbjct: 747 EKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 799
>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
Length = 592
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 94/210 (44%), Gaps = 9/210 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L +R+ E+ + N + + +I K G + A +L+ E K + + Y
Sbjct: 197 AFDL-LRLMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPD---IFTYS 252
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID+ CK + + L ++Y S+I GLC+ G+ +AE ++
Sbjct: 253 TLIDALCKLSQWENVRTLFLEMIHL-----NIYPNVCTFNSVIDGLCKEGKVEDAEEIMR 307
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
M KG++P Y II GYG G ++ I + M + + + N++++ Y
Sbjct: 308 YMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQK 367
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +++ G+ S+ T N +L+
Sbjct: 368 KIDEAMQVCREISQKGLKPSIVTCNVLLHG 397
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 56/107 (52%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q ++I GLC+ G+ +A E++ + GL P Y +I GY + GLL++ + ++ +
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
ME +G D N+++ + N++S M +L+++ F T
Sbjct: 519 MEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAAT 565
>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Brachypodium distachyon]
Length = 627
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 84/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A L +QG +A +L ++ R + Y L+ + C ++R L
Sbjct: 84 VLAALCRQGGCLDAALFLLRVMAH---ETRPTAVSYTTLMRALC---AERRTGQAVGLLR 137
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ +S V ++I GLC+ +A L+ EM G+EP+ Y C++ GY +
Sbjct: 138 DM--QASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCK 195
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G E + ++ +M G D V ++ S ++ + + KM + G+ +V T
Sbjct: 196 AGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVT 255
Query: 297 YNSVLNS 303
YN ++NS
Sbjct: 256 YNVLINS 262
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 54/116 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C+ G+ + EEM +G+EP Y +I R G ++ +++++M G
Sbjct: 189 LLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERG 248
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ V N++++S + + M + G+ TYN+++ S ++ M
Sbjct: 249 LEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEM 304
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI G C + AE ++ M +GL P Y +I + G L ER++ QM
Sbjct: 466 AYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQM 525
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ G D + ++ YG + +++ +++M I + +++
Sbjct: 526 TASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTI 575
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++ LCE G +A N +EM K + Y +I+G RL + E + M +G
Sbjct: 436 LLAALCEQGMMEQARNFFDEMH-KNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEG 494
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IM 308
D+V +M+++ + + +L L++M SG V ++S++ ++
Sbjct: 495 LIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVL 554
Query: 309 SMLQDLNSNDFPL 321
+++++ + D L
Sbjct: 555 ELIREMTAKDIAL 567
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I LC G+ +A ++++M +GLEP+ Y +I + G +++ + N M
Sbjct: 223 GLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEK 282
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM--KDSGIPFSVRTYNSVLNSCSTIMSML 311
G +D V N +++ E+ + L++M ++ + +V T+NSV++ M
Sbjct: 283 GVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMR 342
Query: 312 QDLNSNDF 319
Q D
Sbjct: 343 QAFQVRDM 350
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 34/188 (18%)
Query: 149 VLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSSSVYVKRQAL---- 192
V+ Y LIDS C+ +RG + N L+NS ++A+
Sbjct: 218 VVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRN 277
Query: 193 --------------KSMISGLCEMGQPHEAENLIEEMRVKG---LEPSGFEYKCIIYGYG 235
++I+GL + + EA L+EEM + G +EP+ + +I+G
Sbjct: 278 NMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEM-IHGETMVEPNVVTFNSVIHGLC 336
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G + ++ + M +G + V N+++ +++ + + + +M SG+
Sbjct: 337 KTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSF 396
Query: 296 TYNSVLNS 303
TY+ ++N
Sbjct: 397 TYSILING 404
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 3/109 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C+M Q AE+L+ +MR G+EP Y ++ G++E ++M +
Sbjct: 401 LINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN- 459
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLN 302
++D V + ++ + +L+ M D G IP SV TY+ ++N
Sbjct: 460 CKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSV-TYSMLIN 507
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + + +A L++EM GLEP F Y +I G+ ++ ++ E ++++M DG
Sbjct: 366 LIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDG 425
Query: 255 TRVDTV 260
+ V
Sbjct: 426 IEPELV 431
>gi|168059281|ref|XP_001781632.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666946|gb|EDQ53588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 871
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 62/126 (49%), Gaps = 2/126 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G ++G EA +L +M+ G+ P Y +I Y +LG +D ME
Sbjct: 381 TMIDGYGKLGCFEEAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERV 440
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + D V N ++ +YG + KMK G+ +V TY+++++S S M QD
Sbjct: 441 GLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSK-AGMHQD 499
Query: 314 LNSNDF 319
+ SN F
Sbjct: 500 V-SNVF 504
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I +C+ GQ A +++ MR K + P+ Y +I GYG+LG E+ + + M+
Sbjct: 344 FNTLIDAVCKGGQMELAASIMTTMRGKNISPNVVTYSTMIDGYGKLGCFEEAISLYHDMK 403
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R D V N ++ Y ++ + M+ G+ V TYN+++++
Sbjct: 404 ESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDMERVGLKADVVTYNALIDA 455
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 91/182 (50%), Gaps = 11/182 (6%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHD--SKRGFDDTYARLNQLVNSSSSVY-VK 188
+ +++ KLG E E + Y ++ +S + D S D YA+L + ++ + ++
Sbjct: 380 STMIDGYGKLGCFE-EAISLYHDMKESGVRPDRVSYNTLIDIYAKLGRFDDALIACKDME 438
Query: 189 RQALKS-------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
R LK+ +I + G+ +A L ++M+ +GL P+ Y +I Y + G+ +
Sbjct: 439 RVGLKADVVTYNALIDAYGKQGKYKDAACLFDKMKGEGLVPNVLTYSALIDSYSKAGMHQ 498
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D+ + + + G + D V + ++ S + V+ LQ+M +GI ++ TYNS++
Sbjct: 499 DVSNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLI 558
Query: 302 NS 303
++
Sbjct: 559 DA 560
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/359 (19%), Positives = 130/359 (36%), Gaps = 94/359 (26%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++ K + D +++ + ++I + G +
Sbjct: 446 VVTYNALIDAYGKQGK---YKDAACLFDKM--KGEGLVPNVLTYSALIDSYSKAGMHQDV 500
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
N+ E + GL+P Y +I + GL+ED ++ +M G + + V N ++ +
Sbjct: 501 SNVFTEFKRAGLKPDVVLYSSLIDSCCKCGLVEDAVVLLQEMTQAGIQPNIVTYNSLIDA 560
Query: 269 YG-----------------------------------------DHNELSRMVLWLQKMKD 287
YG DH + V +M+
Sbjct: 561 YGRYGQADKLEAVKANMPNSVQKIGERSMEVVRKPPPSQQNASDHTGVLAAVSVFHEMQQ 620
Query: 288 SGIPFSVRTYNSVLNSCSTIMS-------------------------------------- 309
G+ +V T++++LN+CS S
Sbjct: 621 FGLKPNVVTFSAILNACSRCASLQEASVLLEQMRFFDGWVYGIAHGLLMGLREQVWVEAQ 680
Query: 310 -MLQDLNSNDFPLSIL---ELTEVL-----NEEEVSVVKELEDSSVLDEAMKWDSGETKL 360
+ +++ D+ LT+VL + VV + V + A + L
Sbjct: 681 RLFDEISRMDYATGAAFYNALTDVLWHFGQRQGAQEVVVAAKRRQVWENAWWRSEQQFCL 740
Query: 361 DLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVK 419
DLH M +G+A ++ W+ ++R + H +P ++++ G GKHS V G S+VK V+
Sbjct: 741 DLHLMSVGAAQAMLHVWLLDLRA-LVWDGHALPRVLSILTGWGKHSKVAGVSTVKRAVE 798
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/191 (20%), Positives = 79/191 (41%), Gaps = 28/191 (14%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
++++ TL +LG E L +F K GF + + +V++ R+A
Sbjct: 204 SIMISTLGRLGKVEIALDVF---------NRAQKAGFGNNVYAYSAMVSAYGRSGRCREA 254
Query: 192 LK-----------------SMISGLCEMGQP--HEAENLIEEMRVKGLEPSGFEYKCIIY 232
LK + I C G +A ++ +EM+ +G+EP + +I
Sbjct: 255 LKVFQAMKKAGCKPNLITYNTIIDACGKGGVDLKQALDIFDEMQKEGVEPDRITFNSLIA 314
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
R GL ED +R+ +M+ G D N ++ + ++ + M+ I
Sbjct: 315 VCSRGGLWEDSQRVFAEMQRRGIEQDIFTFNTLIDAVCKGGQMELAASIMTTMRGKNISP 374
Query: 293 SVRTYNSVLNS 303
+V TY+++++
Sbjct: 375 NVVTYSTMIDG 385
>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
gi|219887141|gb|ACL53945.1| unknown [Zea mays]
Length = 522
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 86/181 (47%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +AE +LE L G ++ Y LI+ +C+ RG + Q+ S
Sbjct: 168 KDGKVAKAEQ-VLEMLVHTGLVPTTVI--YNTLINGYCQVRDLRG---AFCIFEQM--KS 219
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ ++I+GLC++ +AE+L+ EM G++PS + +I YG G LE
Sbjct: 220 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEK 279
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M+ G + D + V+ ++ + ++ V L M + + + YNS+++
Sbjct: 280 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIID 339
Query: 303 S 303
+
Sbjct: 340 A 340
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 91/182 (50%), Gaps = 8/182 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ E+ T +L + + G + V+ + +++ +FCK+ + A L+ ++
Sbjct: 275 GQLEKCFT-VLSDMQQKGIKSD--VISFGSVVKAFCKNGK---IPEAVAILDDMI--YKD 326
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V Q S+I E G +A L+E+M+ G+ S Y ++ G R +++ E
Sbjct: 327 VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 386
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ + + G R D V N ++S+ + + + + LQ+M GI ++RTY++++++
Sbjct: 387 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSAL 446
Query: 305 ST 306
++
Sbjct: 447 AS 448
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 67/127 (52%), Gaps = 9/127 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G+ +AE ++E + GL P+ Y +I GY ++ L I QM+S
Sbjct: 162 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 221
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CS 305
R D + N +++ +++ + +M+ SG+ SV T+N+++++ C
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281
Query: 306 TIMSMLQ 312
T++S +Q
Sbjct: 282 TVLSDMQ 288
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + P GF Y + G R G M + + G
Sbjct: 92 LLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKG 151
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++L+ ++++ L+ + +G+ + YN+++N
Sbjct: 152 VMLGAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLING 200
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G+ +A + +EM G+ P+ Y +I G+ + G LE R+ +QM DG
Sbjct: 22 VIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 81
Query: 255 TRVDTVCSNMVLSS 268
+ + V N++LS
Sbjct: 82 PKPNIVTYNVLLSG 95
>gi|297795313|ref|XP_002865541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311376|gb|EFH41800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 711
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K + T+ R+ S + R ++I C+ G+ AE
Sbjct: 448 FYNVVIDTFGKFNCLDHAMTTFDRM-----LSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 502
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ E M +G P Y +I YG +DM+R++ +M+S G + V ++ YG
Sbjct: 503 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 562
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ + L++MK G+ S YN+++N+ + ++ + + S+ S+L
Sbjct: 563 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 622
Query: 325 ELTEVLN 331
L ++N
Sbjct: 623 ALNSLIN 629
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ + K L S+IS L G+ EAE L EE+R G++P Y ++ GY + G L+
Sbjct: 299 ATGLSAKTATLVSIISALANSGRTLEAEALFEELRQSGIKPRTKAYNALLKGYVKTGPLK 358
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHN--ELSRMVL 280
D E +V++ME G D ++++ +Y + E +R+VL
Sbjct: 359 DAELMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 399
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A +EEM+ GL+PS Y +I Y + GL E M SDG + +
Sbjct: 565 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 624
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++G+ V TY +++ +
Sbjct: 625 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 665
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 94/208 (45%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI-LETLSKLGSRERELVLFYCNL 155
LY I E + + +LV +II K G A L+ + + L ++ LV L
Sbjct: 258 LYKEI-ERDKLELDVQLVNDIIMGFAKSGDPSRALQLLGMAQATGLSAKTATLVSIISAL 316
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
+S +++ F++ L Q S + + +A +++ G + G +AE ++ EM
Sbjct: 317 ANSGRTLEAEALFEE----LRQ-----SGIKPRTKAYNALLKGYVKTGPLKDAELMVSEM 367
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P Y +I Y G E ++ +ME+ + ++ + +L+ Y D E
Sbjct: 368 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAGYRDRGEW 427
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++MK G+ + YN V+++
Sbjct: 428 QKTFQVLKEMKSIGVKPDRQFYNVVIDT 455
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 81/189 (42%), Gaps = 8/189 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
+ II+ L G+ EAE L E L + G + R Y L+ + K + + +
Sbjct: 309 LVSIISALANSGRTLEAEAL-FEELRQSGIKPRTKA--YNALLKGYVKTGPLKDAELMVS 365
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + V +I G+ A +++EM ++P+ F + ++ G
Sbjct: 366 EMEK-----RGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMETGDVQPNSFVFSRLLAG 420
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y G + +++ +M+S G + D N+V+ ++G N L + +M GI
Sbjct: 421 YRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPD 480
Query: 294 VRTYNSVLN 302
T+N++++
Sbjct: 481 RVTWNTLID 489
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++G + G+ + +++EM+ G++P Y +I +G+ L+ ++M S+G
Sbjct: 417 LLAGYRDRGEWQKTFQVLKEMKSIGVKPDRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEG 476
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++ + H + M+ G TYN ++NS
Sbjct: 477 IEPDRVTWNTLIDCHCKHGRHIVAEEMFEAMERRGCLPCATTYNIMINS 525
>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
Length = 604
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FC+ K+ + Y L ++ + +++SG C+ G + L
Sbjct: 391 YNILIAGFCR---KKRLHEAYELLQEM--KEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +M G +PS + +++GY ++G +++ RI+ M+ G + V N ++
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
++ + +MK+ +P +V T+N ++L+ L + P EL + +
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFN----------ALLKGLRDKNMPEKAFELMDQMR 555
Query: 332 EEEVSVVKELEDSSVLDEAMKW 353
EE D +D M+W
Sbjct: 556 EERC-----FPDYVTVDVLMEW 572
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ L K G+ +EA + + +S + V + C LID+FC+ + Y +
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNC-LIDAFCRVGN---ISMAYELVE 270
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV------------------- 217
++ N + L +++ GLC G+ A E R
Sbjct: 271 KMENEGVPQNI--VTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGAL 328
Query: 218 ------------------KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
+G P Y +I G + G LED + + M+ G ++DT
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-SC 304
N++++ + L LQ+MK+ GI V TYN++L+ SC
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y L++ CK D L+ + + L +++ GLC+ G+
Sbjct: 169 RPDVVTYGILVNGLCKAGR---VGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRV 225
Query: 206 HEAENLIEEM--RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
EA +E+ V G P+ Y C+I + R+G + +V +ME++G + V N
Sbjct: 226 QEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLN 285
Query: 264 MVLSS 268
++
Sbjct: 286 TIVGG 290
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCI 230
AR+ L+ +SV +++GLC+ G+ +A +++ M + L+ P +
Sbjct: 156 ARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTV 215
Query: 231 IYGYGRLGLLEDMERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ G + G +++ V Q S G +TV N ++ ++ +S ++KM++
Sbjct: 216 VDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENE 275
Query: 289 GIPFSVRTYNSVLNS 303
G+P ++ T N+++
Sbjct: 276 GVPQNIVTLNTIVGG 290
>gi|260780430|gb|ACX50761.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780496|gb|ACX50794.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 188
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ +D L+++++ V +++GLC+ G+ EA + + + GL
Sbjct: 66 GN---VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLF 180
Query: 283 QKMKD 287
++M++
Sbjct: 181 KRMEE 185
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 12 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 71
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 72 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 131
>gi|224099036|ref|XP_002311357.1| predicted protein [Populus trichocarpa]
gi|222851177|gb|EEE88724.1| predicted protein [Populus trichocarpa]
Length = 369
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 101/211 (47%), Gaps = 14/211 (6%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
++ + E+ ++Q +++ L + GQ + A + E + + E FY L+
Sbjct: 1 MFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQIFDEMIEEGIEPTSE---FYTALL 57
Query: 157 DSFCKHDSKRGFDDTYARLNQLVN---SSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
++C+++ ++ ++ +NQ+ VY LK+ + + + L +
Sbjct: 58 AAYCRNNL---IEEGFSIINQMKTVPRCQPDVYTYSTLLKACVDA----SRFELIDILYQ 110
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGDH 272
EM + + P+ ++ G+G++G+ + MER+++ M ES + D N++LS +G+
Sbjct: 111 EMDERLISPNTVTQNIVLSGFGKVGMYDQMERVLSGMLESKTCKPDVWTMNIILSVFGNK 170
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ M W +K ++ GI RT+N ++ +
Sbjct: 171 GHVDLMERWYEKFRNFGIEPETRTFNILIGA 201
>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
Length = 568
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A +++ EMR + G+ P+ + Y +I G+ ++G +++ ++ ++M +
Sbjct: 190 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 249
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N ++ Y D +L +L+ +M + G+ +V TYN ++++
Sbjct: 250 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 301
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+GQ +E + L E + + G R +LVL Y LI+S H + D + +
Sbjct: 368 LIYALSKKGQVQETDKLFDEAVRR-GIRP-DLVL-YNALINS---HSTSGNIDRAFEIMG 421
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +++ GLC +G+ EA LI+EM +G++P Y +I GY
Sbjct: 422 EM--EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSM 479
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G ++D RI N+M + G + N ++ G ++ MV ++M ++GI
Sbjct: 480 KGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV---KEMVENGITPD 536
Query: 294 VRTYNSVLNSCST 306
TY S++ +T
Sbjct: 537 DSTYISLIEGLTT 549
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 97/229 (42%), Gaps = 32/229 (13%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-- 160
E N +I+ K G+ +EA + E L+K G + E V+ Y LI +C
Sbjct: 213 ERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK-GEVKPEAVM-YNALIGGYCDQ 270
Query: 161 -KHDS---------KRGFDDTYARLNQLVNS------SSSVY--VKRQALKSM------- 195
K D+ +RG T A N LV++ + Y V+ K +
Sbjct: 271 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTY 330
Query: 196 ---ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
I+G C+ G +A + E M +G+ + Y +IY + G +++ +++ ++
Sbjct: 331 NILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVR 390
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G R D V N +++S+ + R + +M+ I TYN+++
Sbjct: 391 RGIRPDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLM 439
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G C++ + EA NL +EM + P Y +I G +LG + ++V++M G
Sbjct: 358 MIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 417
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +L + ++++ + + L KMKD GI + TY ++++
Sbjct: 418 VPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDG 466
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 30/250 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI+ CK R++ +LV + +Y ++I +C++ +EA +
Sbjct: 180 YGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMY------NTIIDSMCKVKLVNEAFD 233
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM KG+ P Y +I G+ +G ++D + N+M + + N+++ +
Sbjct: 234 LYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFC 293
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVL---------NSCSTIMSML--QDLNSNDF 319
L L M GI V TYNS++ N I + + + +N N
Sbjct: 294 KERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIH 353
Query: 320 PLSIL-----ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFII 374
SI+ ++ +V +E +++ KE+ ++++ + + ++S L LG +
Sbjct: 354 SYSIMIHGFCKIKKV--DEAMNLFKEMHCNNIIPDVVTYNSLIDGL----CKLGKISY-A 406
Query: 375 LQWMDEMRNR 384
L+ +DEM +R
Sbjct: 407 LKLVDEMHDR 416
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/240 (20%), Positives = 95/240 (39%), Gaps = 43/240 (17%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R + Q N + II + K EA L E +SK S + V+ Y LI
Sbjct: 200 LRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPD---VVTYNALISG 256
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
FC + D + ++ N + +VY ++ G C+ + EA+N++ M +
Sbjct: 257 FCIVGKMKDATDLFNKM-IFENINPNVY----TFNILVDGFCKERRLKEAKNVLAMMMKQ 311
Query: 219 GLEPSGFEYK------CI-----------------------------IYGYGRLGLLEDM 243
G++P F Y C+ I+G+ ++ +++
Sbjct: 312 GIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEA 371
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M + D V N ++ ++S + + +M D G+P TYNS+L++
Sbjct: 372 MNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDA 431
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 58/118 (49%)
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
++ + + ++I+GLC++GQ A L+ + K ++P+ Y II ++ L+ +
Sbjct: 174 HLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFD 233
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++M S G D V N ++S + ++ KM I +V T+N +++
Sbjct: 234 LYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 11/158 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPH 206
V+ Y +LID CK +YA +LV+ V + S++ LC+ Q
Sbjct: 387 VVTYNSLIDGLCKLGKI-----SYAL--KLVDEMHDRGVPHDKITYNSILDALCKNHQVD 439
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L+ +M+ +G++P Y ++ G + G LED + + G +D ++
Sbjct: 440 KAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMI 499
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ H + L KM+++G IP +V TY ++ S
Sbjct: 500 QGFCSHGLFDESLDLLSKMEENGCIPNAV-TYEIIICS 536
>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 860
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S ++ LC+ G+ EA + M KG +P F Y +++GY G DM + N M+S+
Sbjct: 375 SFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSN 434
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + +++ +Y + +L +M+ G+ V TY++V+++ S
Sbjct: 435 GIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFS 486
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVY 186
EEA ++L +S+LG + Y ++ + C + S+R D L + +
Sbjct: 209 EEAVNVLLHRMSELGCVPNAVS--YSIVLKALCDNSMSQRALD----LLQMMAKQGGACS 262
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
A ++I G G+ +A +L EM +G++P Y II + ++ E +
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ QM +DG + DTV + ++ Y L ++MK G+ ++ T NS L S
Sbjct: 323 LRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLAS 379
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P +V +A L K G+ +EA ++++ G + + YC L+ + S+ F
Sbjct: 368 PNIVTCNSFLASLCKHGRSKEAAEF-FDSMTAKGHKPD--IFSYCTLLHGYA---SEGCF 421
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D N + S+ + +I + G +A + EM+ +G+ P Y
Sbjct: 422 ADMIGLFNSM--KSNGIAANCHVFTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYS 479
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I + R+G L D NQM + G + +T + ++ + H L + + +M +
Sbjct: 480 TVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINK 539
Query: 289 GIPF-SVRTYNSVLNS 303
GIP + ++SV+NS
Sbjct: 540 GIPRPDIVFFSSVINS 555
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 94/226 (41%), Gaps = 32/226 (14%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----D 163
Q N + + II G +A+ L+ E ++K R ++F+ ++I+S CK D
Sbjct: 507 QPNTAVYSSIIQGFCMHGGLVKAKELVSEMINK--GIPRPDIVFFSSVINSLCKDGRVMD 564
Query: 164 SKRGFD---DTYAR-----LNQLVNSSSSVYVKRQALK------------------SMIS 197
+ FD D R N L++ V +A K +++
Sbjct: 565 AHDIFDLATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLD 624
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G + G+ ++ L EM+ KG++P+ Y ++ G R G + ++M GT V
Sbjct: 625 GYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTV 684
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++L +N ++ QK+ + FS+ N+++N+
Sbjct: 685 TVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINA 730
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ +AE ++ +M G +P Y C+I+GY LG L++ ++ +M+ G
Sbjct: 306 IIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRG 365
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N L+S H + M G + +Y ++L+
Sbjct: 366 LIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPDIFSYCTLLHG 414
>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
Length = 473
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I GLC+MG EA + EM KG+EP+ + Y ++ Y + G E ++ ++M
Sbjct: 295 TAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGK 354
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N++++ + H + + ++M GI V TYN ++
Sbjct: 355 GLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQG 404
Score = 43.5 bits (101), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ID CK D+ N++V+ + A S+++ C+ G A +
Sbjct: 293 YTTAIDGLCKMGC---IDEARQIWNEMVDKG--MEPNEYAYCSLVAYYCKAGDFEMARKV 347
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM KGL+ S ++ G+ G +++ + +M G D + N+++
Sbjct: 348 YDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCK 407
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
LS + +++ SG+ SV T+ ++++
Sbjct: 408 AGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDT 439
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LID FCK +K +DD + + + ++++G C G E
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRK---------DIIPDHISYGTVLNGFCSSGLLPE 590
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A NL ++M KG+ P+ +I GY R G + +++M S+G D+ N ++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y L + + + +M+ G+ F++ TYN +LN
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G +A + +M G+ P F Y +I GY + LE ++N+ME
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + + N++L+ + ++ L+KM + GI TY+S++N
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 150 LFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
+ Y LID FC++ D+ + D+ AR ++ + ++GLC+
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLAR---------GCFMDVVTYNTFLNGLCKKKMF 483
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+A+ L EM +G+ P + + +I GY + G ++ + M + D V N +
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543
Query: 266 LSSYGDHNELSRMV-LWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ + E+ R LW ++ IP + +Y +VLN CS+
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHI-SYGTVLNGFCSS 585
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++ CK K+ F D N++V + ++I G C+ G +A
Sbjct: 467 VVTYNTFLNGLCK---KKMFADADMLFNEMV--ERGMVPDFYTFTTLIRGYCKDGNMDKA 521
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDMER---------------- 245
NL E M L+P Y +I G+ + G L +DM R
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581
Query: 246 ------------IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ +QM G R + V N ++ Y ++ + +L KM +GI
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641
Query: 294 VRTYNSVLNS 303
+YN++++
Sbjct: 642 SFSYNTLIDG 651
>gi|297826581|ref|XP_002881173.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297327012|gb|EFH57432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 917
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/376 (23%), Positives = 156/376 (41%), Gaps = 85/376 (22%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL--VLFYCNLIDSFCKHDSKRGFDDTYAR 174
++ KQG+ +E + + E RE L +L Y LID + SK G Y
Sbjct: 485 LLGGYGKQGKYDEVKKVFAEM-----KREHVLPNLLTYSTLIDGY----SKGGL---YKE 532
Query: 175 LNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ S ++ + ++I LC+ G A +LI+EM +G+ P+ Y II
Sbjct: 533 AMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 233 GYGRLGLLEDMERIVNQ-------------MESDGTRVDTVCSNMVLSSYGDH------- 272
+GR +E N E++G RV + L+S G++
Sbjct: 593 AFGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQLFGQ--LTSEGNNRMTKDCK 650
Query: 273 ---NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSI 323
ELS ++ +KM I +V T++++LN+CS S +L++L D +
Sbjct: 651 EGMQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYG 710
Query: 324 LELTEVLNEEE---------VSVVKELEDS--SVLDEA---MKWDSGETK---------- 359
+ ++ + E V E++ S S A M W G+ +
Sbjct: 711 VVHGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGR 770
Query: 360 -------------LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHS 406
LDLH M G+A ++ W+ +R+ E H +P ++++ G GKHS
Sbjct: 771 SRQVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWGKHS 829
Query: 407 TVRGESSVKAMVKKMM 422
V G+ ++K V+ ++
Sbjct: 830 KVVGDGALKRAVEVLL 845
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 5/162 (3%)
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+SV +K+ + +++ G + G+ E + + EM+ + + P+ Y +I GY + GL
Sbjct: 471 ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLTYSTLIDGYSKGGLY 530
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++ + + +S G R D V + ++ + + + V + +M GI +V TYNS+
Sbjct: 531 KEAMEVFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590
Query: 301 LNSCSTIMSMLQDL---NSNDFPLSILELTEVLNEEEVSVVK 339
+++ +M + N P S L+E+ E V++
Sbjct: 591 IDAFGRSATMERSADYSNGGSLPFSSSALSELTETEGNRVIQ 632
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G E A L E ++ R + V Y L+D+ CK D + L
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMSNR---RIEQDVFSYNTLLDAICKGGQ---MDLAFEILA 398
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+ + + + ++I G + G+ EA NL EMR + Y ++ Y +
Sbjct: 399 QM--PAKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLNIALDRVSYNTLLSIYTK 456
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G E+ I+ +M S G + D V N +L YG + + +MK + ++ T
Sbjct: 457 VGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFAEMKREHVLPNLLT 516
Query: 297 YNSVLNSCS 305
Y+++++ S
Sbjct: 517 YSTLIDGYS 525
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L G+ A+ + E G + + + +I YGR GL E+ + N M+
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFSGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G R + V N V+ + G E ++ + +M+ + + T+NS+L CS
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNCVQPDRITFNSLLAVCS 350
>gi|356565453|ref|XP_003550954.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E++++Q ++I L K GQ A L + + EL Y
Sbjct: 109 ALQVFDMLREQTFYQPKEGTYMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPEL---YT 165
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ ++C+ + D+ ++ LN+ L V+ +K + + E
Sbjct: 166 ALLAAYCRSNM---IDEAFSVLNEMKKLPRCQPDVFTYSTLIKVCVDAF----KFDLVEL 218
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L EEM + + P+ ++ GYG+ G+ + ME++++ M S + D N ++S +
Sbjct: 219 LYEEMAERSIMPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLLSTTCKPDVWTMNTIISVF 278
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ ++ M W +K + GI RT+N ++ +
Sbjct: 279 GNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGA 312
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 47/113 (41%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ ++IS MGQ E E+ R G+EP + +I YG+ + + M ++ M
Sbjct: 270 TMNTIISVFGNMGQIDMMEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYM 329
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
T N V+ ++ D + M +M+ G+ +T ++N
Sbjct: 330 RKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLING 382
>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
Length = 722
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G ++A++L +M GL+P Y C+I+ + GLL + + M SDG
Sbjct: 524 LIDGLCKTGNLNDAKDLQMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDG 583
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
V + + +Y L W +KM + G+ + TYN ++++ C T
Sbjct: 584 LAPSAVTYTVFIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRT 636
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++G C+ G EA L ++R GL P+ Y +I GY RLG LE+ R+ +M
Sbjct: 383 SLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLKEEMVEQ 442
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVL--WLQKMKDSGIPFSVRTYNS 299
G D VC+ +L G HN S + + +M G+ YN+
Sbjct: 443 GCLPD-VCTYTILMK-GSHNACSLAMAREFFDEMLSKGLQPDCFAYNT 488
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G +A++L EM +G+ P+ Y +I+G + G +E + +M + G
Sbjct: 314 LITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMG 373
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D + N +L+ Y L +L ++ +G+ +V TYN +++
Sbjct: 374 LQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDG 422
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 21/201 (10%)
Query: 117 IIAFLDKQGQREEAETLILET-LSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I L ++G EEA ++ LSK S Y LI + DD
Sbjct: 280 VITGLARKGDLEEAAEMVEGMRLSKKASS-----FTYNPLITGLLAKGFVKKADDL---- 330
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
QL + + +MI GL + GQ A+ EMR GL+P Y ++ GY
Sbjct: 331 -QLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRAMGLQPDVITYNSLLNGYC 389
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPF 292
+ G L++ + + G + N+++ Y GD E R+ ++M + G
Sbjct: 390 KAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEARRLK---EEMVEQGCLP 446
Query: 293 SVRTYNSVL----NSCSTIMS 309
V TY ++ N+CS M+
Sbjct: 447 DVCTYTILMKGSHNACSLAMA 467
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 33/300 (11%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR----FLSSLALAVTRDSKA--ASRLISKFV--ASS 68
CCR R +L+L ++ K G S+L + + + A L+ + V
Sbjct: 117 CCRCR--KLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P I LNAL + L + S A L R+ E + FQ N ++ + K GQ
Sbjct: 175 PTLITLNALVNGLCLNGK----VSDAVLLIDRMVE-TGFQPNEVTYGPVLKVMCKSGQ-- 227
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSS 183
L +E L K+ R+ +L + Y +ID CK S D+ + N++ +
Sbjct: 228 --TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS---LDNAFNLFNEMEIKGFKADI 282
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+Y ++I G C G+ + L+ +M + + P + +I + + G L +
Sbjct: 283 IIYT------TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + +M G DTV ++ + N+L + L M G ++RT+N ++N
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 25/214 (11%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LID F K R ++ + + Q S +V S+I G C+ Q +A
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTV-----TYTSLIDGFCKENQLDKA 371
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++ M KG P+ + +I GY + L++D + +M G DTV N ++
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
+ + +L Q+M + + +Y +L+ L N P LE+ E
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG----------LCDNGEPEKALEIFE 481
Query: 329 VLNEEEVS--------VVKELEDSSVLDEAMKWD 354
+ + ++ ++ + ++S +D+A WD
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDA--WD 513
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 84/188 (44%), Gaps = 11/188 (5%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E A+ L E +S+ R R ++ Y L+D C + + + ++ + S
Sbjct: 436 GKLEVAKELFQEMVSR---RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK-----SK 487
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + +I G+C + +A +L + +KG++P Y +I G + G L + +
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ +ME DG + N+++ ++ + ++ ++++K G T L
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFAL--- 604
Query: 305 STIMSMLQ 312
ST+ ML+
Sbjct: 605 STLARMLK 612
>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 680
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 91/202 (45%), Gaps = 10/202 (4%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSK 165
F + +I L K G+ A LE L ++ + +L V+ Y +IDS CK +
Sbjct: 171 FHLDQVSYGTLINGLCKVGETRAA----LELLRRVDGKLVQLDVVMYSTIIDSMCKDKNV 226
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D Y+ + SS+ V ++ISG C +G+ +A L +M + + P +
Sbjct: 227 NDAFDLYSEMVSRRISSNIV-----TYSALISGFCIVGKLKDAIGLFNKMTSENINPDVY 281
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ ++ + + G +++ + + M G + D V N ++ Y NE++ L M
Sbjct: 282 TFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTM 341
Query: 286 KDSGIPFSVRTYNSVLNSCSTI 307
G+ +VR+YN V+N I
Sbjct: 342 SHRGVTATVRSYNIVINGFCKI 363
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 77/160 (48%), Gaps = 23/160 (14%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK--RQALKS-------MISGL 199
++ Y +++D+ CK N LV+ + ++ +K Q ++ +I GL
Sbjct: 420 IITYSSILDALCK--------------NHLVDKAIALLIKLKDQGIRPNMYTYTILIDGL 465
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C+ G+ +A N+ E++ VKG + Y +I G+ GL ++ ++++M+ + D
Sbjct: 466 CKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDA 525
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ +++ S D +E + L++M G+ +S Y S
Sbjct: 526 ITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGS 565
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 59/278 (21%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEII---AFLDKQGQREEAETLILETLSKLGSRERELVL 150
A L+ ++T E+ NP + I AF K+G+ +EA+ L + K G + ++
Sbjct: 264 AIGLFNKMTSENI---NPDVYTFNILVDAFC-KEGRVKEAKNG-LAMMMKQGIKPD--IV 316
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +L+D +C + + + LN + S V ++ +I+G C++ +A
Sbjct: 317 TYNSLMDGYCLVNE---VNMAKSILNTM--SHRGVTATVRSYNIVINGFCKIKMVDQAMK 371
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L +EM K + P+ Y +I G + G + +++ M G + D + + +L +
Sbjct: 372 LFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALC 431
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIMSMLQDLNSNDFPLSIL 324
++ + + + L K+KD GI ++ TY +++ C ++ +DL + L++
Sbjct: 432 KNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVN 491
Query: 325 ELTEVLN--------EEEVSVVKELEDSSVLDEAMKWD 354
T ++ +E +S++ +++D+S + +A+ ++
Sbjct: 492 TYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAITYE 529
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 12/207 (5%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R + Q + + + II + K +A L E +S+ R ++ Y LI
Sbjct: 198 LRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSR---RISSNIVTYSALISG 254
Query: 159 FCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
FC + D N++ N + VY ++ C+ G+ EA+N + M
Sbjct: 255 FCIVGKLK---DAIGLFNKMTSENINPDVY----TFNILVDAFCKEGRVKEAKNGLAMMM 307
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+G++P Y ++ GY + + + I+N M G N+V++ + +
Sbjct: 308 KQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVD 367
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++M I +V TYNS+++
Sbjct: 368 QAMKLFKEMHHKQIFPNVITYNSLIDG 394
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L+ +++ +G+ P+ + Y +I G + G LED I +
Sbjct: 425 SILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVK 484
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
G + +++ + H + L KMKD S IP ++ TY ++ S
Sbjct: 485 GYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNSCIPDAI-TYEIIICS 534
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LID FCK +K +DD + + + ++++G C G E
Sbjct: 540 YNTLIDGFCKAGEMGRAKELWDDMIRK---------DIIPDHISYGTVLNGFCSSGLLPE 590
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A NL ++M KG+ P+ +I GY R G + +++M S+G D+ N ++
Sbjct: 591 ALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLID 650
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y L + + + +M+ G+ F++ TYN +LN
Sbjct: 651 GYLKEANLEKAFILINEMEKRGLQFNIITYNLILNG 686
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G +A + +M G+ P F Y +I GY + LE ++N+ME
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + + N++L+ + ++ L+KM + GI TY+S++N
Sbjct: 672 GLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLING 721
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 73/163 (44%), Gaps = 16/163 (9%)
Query: 150 LFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
+ Y LID FC++ D+ + D+ AR ++ + ++GLC+
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLAR---------GCFMDVVTYNTFLNGLCKKKMF 483
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+A+ L EM +G+ P + + +I GY + G ++ + M + D V N +
Sbjct: 484 ADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543
Query: 266 LSSYGDHNELSRMV-LWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ + E+ R LW ++ IP + +Y +VLN CS+
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHI-SYGTVLNGFCSS 585
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++ CK K+ F D N++V + ++I G C+ G +A
Sbjct: 467 VVTYNTFLNGLCK---KKMFADADMLFNEMV--ERGMVPDFYTFTTLIRGYCKDGNMDKA 521
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDMER---------------- 245
NL E M L+P Y +I G+ + G L +DM R
Sbjct: 522 LNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNG 581
Query: 246 ------------IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ +QM G R + V N ++ Y ++ + +L KM +GI
Sbjct: 582 FCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPD 641
Query: 294 VRTYNSVLNS 303
+YN++++
Sbjct: 642 SFSYNTLIDG 651
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K +KR +D + +L + S + A+ MI L + G+ +A NL
Sbjct: 440 YCSLIDALGK--AKR-YDIAHELFQELKENCGSSSARVYAV--MIKHLGKAGRLDDAVNL 494
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P+ + Y ++ G R G+L++ + +M+ G D N++L+
Sbjct: 495 FDEMNKLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAK 554
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK S I +YN+VL + S +++++N F ++
Sbjct: 555 TGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLGFEYDLIT 614
Query: 326 LTEVL 330
+ +L
Sbjct: 615 YSSIL 619
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 9/201 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L +GQ E+ L E +S G + V Y LI +FCK G D+ RL
Sbjct: 196 MIIMLMHEGQYEKVHELYNE-MSNEGHCFPDTVT-YSALISAFCK----LGRQDSAIRLL 249
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N++ ++ K + +I+ ++ H A L EEMR + P F Y +I G G
Sbjct: 250 NEMKDNGMQPTAKIYTM--LIALFFKLNNVHGALGLFEEMRHQYCRPDVFTYTELIRGLG 307
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G ++ ++M +G R DTV N +++ G L V ++M SV
Sbjct: 308 KAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMGTLQCIPSVV 367
Query: 296 TYNSVLNSCSTIMSMLQDLNS 316
TYN+++ + S + +++S
Sbjct: 368 TYNTIIKALFESKSRISEISS 388
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + G PH A ++ M+ ++P Y ++ GL E+ +++ +M G
Sbjct: 548 ILNGLAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAAKLMKEMNVLG 607
Query: 255 TRVDTVCSNMVLSSYG--DH 272
D + + +L + G DH
Sbjct: 608 FEYDLITYSSILEAIGKVDH 627
>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
Length = 528
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A +++ EMR + G+ P+ + Y +I G+ ++G +++ ++ ++M +
Sbjct: 150 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 209
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N ++ Y D +L +L+ +M + G+ +V TYN ++++
Sbjct: 210 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 261
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+GQ +E + L E + + G R +LVL Y LI+S H + D + +
Sbjct: 328 LIYALSKKGQVQETDKLFDEAVRR-GIRP-DLVL-YNALINS---HSTSGNIDRAFEIMG 381
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +++ GLC +G+ EA LI+EM +G++P Y +I GY
Sbjct: 382 EM--EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 439
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G ++D RI N+M + G + N ++ G ++ MV ++M ++GI
Sbjct: 440 KGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV---KEMVENGITPD 496
Query: 294 VRTYNSVLNSCST 306
TY S++ +T
Sbjct: 497 DSTYISLIEGLTT 509
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 84/204 (41%), Gaps = 7/204 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E N +I+ K G+ +EA + E L+K G + E V+ Y LI +C
Sbjct: 173 ERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK-GEVKPEAVM-YNALIGGYCDQ 230
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D +++V ++ V L ++ L G+ EA L+EEM KGL P
Sbjct: 231 GK---LDTALLYRDRMVERGVAMTVATYNL--LVHALFMDGRGTEAYELVEEMGGKGLAP 285
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
F Y +I G+ + G ++ I M G R V ++ + ++
Sbjct: 286 DVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLF 345
Query: 283 QKMKDSGIPFSVRTYNSVLNSCST 306
+ GI + YN+++NS ST
Sbjct: 346 DEAVRRGIRPDLVLYNALINSHST 369
>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
Length = 798
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 57/105 (54%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ EA + + M KG +P Y +++GY G L M ++++ M +GT+ D
Sbjct: 286 LCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNGTQPD 345
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+++ +Y H + +L KM+ G+ ++ TY +V+++
Sbjct: 346 HYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDA 390
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 12/137 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G+ EA L+E M + G++P+ Y II GY + G +ED + QM S
Sbjct: 491 TLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASK 550
Query: 254 GTRVDTVCSNMVLSSYGDHNELS---RMVLWLQKMKDSGIPFSVRTYNSVL-----NSCS 305
G V + +L ++ + LW+ K GI + TYN +L N+C+
Sbjct: 551 GVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIK---CGIKLPIGTYNIILQGLCQNNCT 607
Query: 306 -TIMSMLQDLNSNDFPL 321
+ M +L DF L
Sbjct: 608 DDALRMFHNLCLIDFHL 624
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GL GQ +A L +EM +G+ P+ Y C+++GY G ++ I +M D
Sbjct: 211 TVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRD 270
Query: 254 GTRVDTVCSNMVL 266
G D V N ++
Sbjct: 271 GVEPDVVTYNTLM 283
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 14/190 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSKRGFDDTYA 173
+I K G +EA + SK+ R++ L ++ Y ++D+ C+ DD +
Sbjct: 352 LIGAYAKHGMVDEA----MLAFSKM--RQQGLHPNIVTYGTVMDALCRVGK---VDDAMS 402
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ ++L+ S + +++I GLC + +AE L EM +G+ P+ + ++
Sbjct: 403 QFDRLI--SEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNH 460
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ G++ + I + M + D + ++ Y ++ L+ M G+ +
Sbjct: 461 LCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPN 520
Query: 294 VRTYNSVLNS 303
TYN+++N
Sbjct: 521 EVTYNTIING 530
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/112 (18%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++++ LC+ G A+N+ + M ++ Y +I GY G +++ +++ M
Sbjct: 454 FNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMV 513
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DG + + V N +++ Y + + ++M G+ + Y+++L+
Sbjct: 514 LDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHG 565
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVK----GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++ GLC+ + +A +L+ M G P Y +I G R G L+ + ++M
Sbjct: 173 LLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEM 232
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N +L Y + + +KM G+ V TYN+++
Sbjct: 233 LDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNTLM 283
>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
Length = 1098
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 11/186 (5%)
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q + + + V ++I+G C+MG+ +A L+ EM L+ + F Y +I GY +
Sbjct: 337 QEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCK 396
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LG + + I+++M G R DT N ++ Y +++ M +G + T
Sbjct: 397 LGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLT 456
Query: 297 YNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
YN++L ++ S+ L L L L + + E+S S++LD K
Sbjct: 457 YNALLKGFCSLGSIDDALR-----LWFLMLKKGIAPNEISC------STLLDGFFKSGKT 505
Query: 357 ETKLDL 362
E L+L
Sbjct: 506 EKALNL 511
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 57/108 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC++G+ +A+NL+ +++ KG F Y +I+G G ++ + + M S G
Sbjct: 731 VIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLRDTMLSVG 790
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ V N ++ ELSR V +K+ GI + TYN++++
Sbjct: 791 LTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLID 838
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V V A ++++G CE+GQ ++A +++ + +G P+ Y ++ GY +E+
Sbjct: 273 GVEVNLVAYHAVMNGYCEVGQTNDARRMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEA 332
Query: 244 ERIVNQMESDGTR-VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E +V ++ + VD V++ Y + L +M DS + ++ YN ++N
Sbjct: 333 EGVVQEIRKNKQLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMIN 392
Query: 303 SCSTIMSMLQDLN 315
+ M++ N
Sbjct: 393 GYCKLGRMVEAHN 405
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I+GLC++ + EAE L+++M+ P Y+ + GY ++G ++ RI+N++E
Sbjct: 527 FNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELE 586
Query: 252 SDG 254
+ G
Sbjct: 587 NLG 589
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 76/188 (40%), Gaps = 8/188 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ EA IL ++ +G R Y +L+D +CK +TY + L N
Sbjct: 396 KLGRMVEAHN-ILHEMTGVGVRPDTYS--YNSLVDGYCKKGLMNKAFETYNTM--LRNGF 450
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
++ + AL + G C +G +A L M KG+ P+ ++ G+ + G E
Sbjct: 451 AATTLTYNAL---LKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEK 507
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + + G +T N V++ + + KMK P + TY ++ +
Sbjct: 508 ALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFS 567
Query: 303 SCSTIMSM 310
I M
Sbjct: 568 GYCKIGDM 575
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 81/191 (42%), Gaps = 14/191 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
+ G+ E+A L+ E + SR + + Y +I+ +CK + +++
Sbjct: 361 QMGRMEDAARLLNEMVD---SRLQVNLFVYNIMINGYCKLGRM-------VEAHNILHEM 410
Query: 183 SSVYVKRQ--ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ V V+ + S++ G C+ G ++A M G + Y ++ G+ LG +
Sbjct: 411 TGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTLTYNALLKGFCSLGSI 470
Query: 241 EDMERIVNQMESDGTRVDTV-CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+D R+ M G + + CS ++ + + LW + + G+ + T+N+
Sbjct: 471 DDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKETLA-RGLAKNTTTFNT 529
Query: 300 VLNSCSTIMSM 310
V+N I M
Sbjct: 530 VINGLCKIERM 540
>gi|341605699|gb|AEK82952.1| pentatricopeptide repeat superfamily protein [Capsella grandiflora]
Length = 208
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 95/202 (47%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 9 DEKGIQVPPHVFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 65
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + + G
Sbjct: 66 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFQTCXFNGXAI 120
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 121 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDALTKHGKVDEAMXLF 180
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 181 KRMEEEEGCDQTVYTYTILISG 202
>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
Length = 902
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A +++ EMR + G+ P+ + Y +I G+ ++G +++ ++ ++M +
Sbjct: 524 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 583
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N ++ Y D +L +L+ +M + G+ +V TYN ++++
Sbjct: 584 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 635
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+GQ +E + L E + + G R +LVL Y LI+S H + D + +
Sbjct: 702 LIYALSKKGQVQETDKLFDEAVRR-GIRP-DLVL-YNALINS---HSTSGNIDRAFEIMG 755
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +++ GLC +G+ EA LI+EM +G++P Y +I GY
Sbjct: 756 EM--EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 813
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G ++D RI N+M + G + N + L G ++ MV ++M ++GI
Sbjct: 814 KGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV---KEMVENGITPD 870
Query: 294 VRTYNSVLNSCST 306
TY S++ +T
Sbjct: 871 DSTYISLIEGLTT 883
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 82/190 (43%), Gaps = 7/190 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ K G+ +EA + E L+K G + E V+ Y LI +C D +
Sbjct: 561 VISGWCKVGRVDEAVKVFDEMLTK-GEVKPEAVM-YNALIGGYCDQGK---LDTALLYRD 615
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V ++ V L ++ L G+ EA L+EEM KGL P F Y +I G+ +
Sbjct: 616 RMVERGVAMTVATYNL--LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCK 673
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ I M G R V ++ + ++ + GI +
Sbjct: 674 EGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVL 733
Query: 297 YNSVLNSCST 306
YN+++NS ST
Sbjct: 734 YNALINSHST 743
>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 621
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 33/300 (11%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR----FLSSLALAVTRDSKA--ASRLISKFV--ASS 68
CCR R +L+L ++ K G S+L + + + A L+ + V
Sbjct: 117 CCRCR--KLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P I LNAL + L + S A L R+ E + FQ N ++ + K GQ
Sbjct: 175 PTLITLNALVNGLCLNGK----VSDAVLLIDRMVE-TGFQPNEVTYGPVLKVMCKSGQ-- 227
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSS 183
L +E L K+ R+ +L + Y +ID CK S D+ + N++ +
Sbjct: 228 --TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS---LDNAFNLFNEMEIKGFKADI 282
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+Y ++I G C G+ + L+ +M + + P + +I + + G L +
Sbjct: 283 IIYT------TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + +M G DTV ++ + N+L + L M G ++RT+N ++N
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 25/214 (11%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LID F K R ++ + + Q S +V S+I G C+ Q +A
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTV-----TYTSLIDGFCKENQLDKA 371
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++ M KG P+ + +I GY + L++D + +M G DTV N ++
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
+ + +L Q+M + + +Y +L+ L N P LE+ E
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG----------LCDNGEPEKALEIFE 481
Query: 329 VLNEEEVS--------VVKELEDSSVLDEAMKWD 354
+ + ++ ++ + ++S +D+A WD
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDA--WD 513
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E A+ L E +S+ R R ++ Y L+D C + + + ++ + S
Sbjct: 436 GKLEVAKELFQEMVSR---RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK-----SK 487
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + +I G+C + +A +L + +KG++P Y +I G + G L + +
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +ME DG + N+++ ++ + ++ ++++K G T V++
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605
Score = 39.7 bits (91), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
K ++ GLC+ G+P +A + E++ +E Y II+G ++D + +
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N+++ LS L +KM++ G + TYN ++ +
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
Length = 564
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I GLC+MG EA + EM KG+EP+ + Y ++ Y + G E ++ ++M
Sbjct: 295 TAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGK 354
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N++++ + H + + ++M GI V TYN ++
Sbjct: 355 GLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQG 404
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 16/187 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDDTYARLN 176
L K G +EA + E + K G E YC+L+ +CK +++ +D+ +
Sbjct: 300 LCKMGCIDEARQIWNEMVDK-GMEPNEYA--YCSLVAYYCKAGDFEMARKVYDEMLGK-- 354
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L S+ S + +++G C G+ EA + EEM KG+E Y +I G +
Sbjct: 355 GLKESTVSCNI-------LVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCK 407
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G L + ++ Q+ S G ++ + + ++ V L+ M G+ R
Sbjct: 408 AGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKVMHAKGLEPLARI 467
Query: 297 YNSVLNS 303
+S++N
Sbjct: 468 NDSIING 474
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/219 (19%), Positives = 94/219 (42%), Gaps = 23/219 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ID CK D+ N++V+ + A S+++ C+ G A +
Sbjct: 293 YTTAIDGLCKMGC---IDEARQIWNEMVDKG--MEPNEYAYCSLVAYYCKAGDFEMARKV 347
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM KGL+ S ++ G+ G +++ + +M G D + N+++
Sbjct: 348 YDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCK 407
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
LS + +++ SG+ SV T+ +++ +M ++ + + +EL +V++
Sbjct: 408 AGRLSEAIQVYEQLLSSGLEPSVSTFTPLID------TMCEEGQVD----AAVELLKVMH 457
Query: 332 EEEVSVVKELEDSSV--------LDEAMKWDSGETKLDL 362
+ + + + DS + ++ M W +G K +L
Sbjct: 458 AKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLKKNL 496
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 10/186 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARL 175
++A+ K G E A + E L K G +E + CN L+ FC H D+
Sbjct: 331 LVAYYCKAGDFEMARKVYDEMLGK-GLKESTV---SCNILVTGFCTHGR---VDEALGMF 383
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++V V + +I GLC+ G+ EA + E++ GLEPS + +I
Sbjct: 384 EEMVKKGIEHDVITYNI--LIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMC 441
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G ++ ++ M + G ++ +++ + + WL M +
Sbjct: 442 EEGQVDAAVELLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREH 501
Query: 296 TYNSVL 301
T+NS++
Sbjct: 502 TFNSLV 507
>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 580
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 78/161 (48%), Gaps = 14/161 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +D CK+D + L SS+ ++ + L +I GLC+ G+ A L
Sbjct: 403 YGIFLDGLCKNDCLFEAMKLFTEL-----KSSNFKLEIENLNCLIDGLCKAGKLETAWEL 457
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E++ +G EP+ Y +I+G+ R G ++ ++ +ME++G D + N ++ + +
Sbjct: 458 FEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYE 517
Query: 272 HNELSRMVLWLQKMKDSGI-PFSVRTYNSVLNSCSTIMSML 311
N+L +V L +M + P ++ +CS ++ ML
Sbjct: 518 SNKLEEVVQLLHRMAQKDVSPDAI--------TCSIVVDML 550
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/318 (22%), Positives = 122/318 (38%), Gaps = 46/318 (14%)
Query: 26 TLVQ--CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSP 83
TL++ C+ R+++ + FL L T D LI + IAL +L+
Sbjct: 144 TLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLN- 202
Query: 84 DTTHPRLSSLAFPLYMRITEESWFQWN--PKLVAE--IIAFLDKQGQREEAETLILETLS 139
+ S ++ N P ++ I+ L K G+ +EA+ L E +
Sbjct: 203 -------------------DISRYEINCKPNVITYNIIVDGLCKVGREDEAKQL-FEEMK 242
Query: 140 KLGSRERELV--------LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
G E++ + + LID+ CK + L ++ S +
Sbjct: 243 TQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGK---VIEAKKLLGVMI--ESGIVPDLVT 297
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S+I G C +G + A L M KG EP Y +I GY + +E+ ++ N+M
Sbjct: 298 YNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEML 357
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSC-S 305
G R + + + +L ++ MK GI + TY L N C
Sbjct: 358 LVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLF 417
Query: 306 TIMSMLQDLNSNDFPLSI 323
M + +L S++F L I
Sbjct: 418 EAMKLFTELKSSNFKLEI 435
>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Glycine max]
Length = 852
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 92/205 (44%), Gaps = 10/205 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
CN + SK G ++ + + S SV+ +I L G A +L
Sbjct: 219 CNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYNM----VIGCLAREGDLEAARSLF 274
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EEM+ KGL P Y +I GYG++G+L + +M+ G D + N +++ +
Sbjct: 275 EEMKAKGLRPDIVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKF 334
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQDLNSNDFPLSILELTEVLN 331
+ + +L MK G+ +V TY++++++ C M L +N F + ++ + N
Sbjct: 335 ERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGML----LEANKFFVDMIRVGLQPN 390
Query: 332 E-EEVSVVKELEDSSVLDEAMKWDS 355
E S++ L+EA K +S
Sbjct: 391 EFTYTSLIDANCKIGDLNEAFKLES 415
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 117/296 (39%), Gaps = 54/296 (18%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+D C+ R ++ + L + + + +Q S+ G + +A
Sbjct: 426 IVTYTALLDGLCEDGRMREAEELFGALLK-----AGWTLNQQIYTSLFHGYIKAKMMEKA 480
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++EEM K L+P Y I+G R +ED ++ +M G ++ ++ +
Sbjct: 481 MDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDA 540
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLS 322
Y + + V LQ+M+D GI +V TY +++ I + + N +
Sbjct: 541 YFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPN 600
Query: 323 ILELTEVLN--------EEEVSVVKELED----------SSVLDEAMKWDSGETKLDLH- 363
I+ T +++ EE ++ E+ D +S++D MK + L L
Sbjct: 601 IMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHGNPGEALSLRN 660
Query: 364 -----GMHLGSAYFIILQW--------------MDEMRNRFNNEKHVIPAEITVVC 400
GM L + L W +DEM K +IP ++ +C
Sbjct: 661 RMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEML-----RKGIIPDQVLCIC 711
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 8/129 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LID CK+D ++ N++++ S + S+I G + G P EA
Sbjct: 601 IMIYTALIDGLCKNDC---LEEAKNLFNEMLDKGISP--DKLVYTSLIDGNMKHGNPGEA 655
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L M G+E Y +I+G+ R G ++ + ++++M G D V +L
Sbjct: 656 LSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQVLCICLLRK 715
Query: 269 Y---GDHNE 274
Y GD NE
Sbjct: 716 YYELGDINE 724
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 40/213 (18%), Positives = 91/213 (42%), Gaps = 21/213 (9%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +LI+ FCK + + F+ + + + + Y ++I C+ G E
Sbjct: 321 VITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTY------STLIDAFCKAGMLLE 374
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +M GL+P+ F Y +I ++G L + ++ ++M+ G ++ V +L
Sbjct: 375 ANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLD 434
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF-P 320
+ + + +G + + Y S+ + M +L+++N + P
Sbjct: 435 GLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKP 494
Query: 321 LSILELTEVLN-------EEEVSVVKELEDSSV 346
+L T++ E+ ++V++E+ D +
Sbjct: 495 DLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGL 527
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/238 (20%), Positives = 99/238 (41%), Gaps = 19/238 (7%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P+ + N L H LS + S + + S F +N +I L ++G E
Sbjct: 214 PKVRSCNELLHRLSKSSKGGLALSFFKDMVVAGLSPSVFTYN-----MVIGCLAREGDLE 268
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
A +L E +K G R ++ Y +LID + K G + + +
Sbjct: 269 AARSLFEEMKAK-GLRPD--IVTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVI--- 322
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
S+I+ C+ + +A + M+ +GL+P+ Y +I + + G+L + +
Sbjct: 323 --TYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFV 380
Query: 249 QMESDGTRVDTVCSNMVLSS---YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G + + ++ + GD NE ++ +M+ +G+ ++ TY ++L+
Sbjct: 381 DMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLE---SEMQQAGVNLNIVTYTALLDG 435
>gi|357124808|ref|XP_003564089.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Brachypodium distachyon]
Length = 502
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 103/258 (39%), Gaps = 22/258 (8%)
Query: 41 RFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMR 100
RFL SL KA + + + V+S + LS L++ D PR L P
Sbjct: 136 RFLPSLLRRRRVSHKALAVCLDRLVSSR----CPDVLSDLIA-DLRDPRNKYLPTP---- 186
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
N + +I K G E A ++ E R ++ Y LI C
Sbjct: 187 ---------NTCVYNILIKHYVKNGDSETAFRVLDEMREYTCGDVRPNLVTYSTLIGGLC 237
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
+ + + + +++ + + +I+G C +GQ +A + MR
Sbjct: 238 RAGKMK---EAFELFEEMIEKDH-IVPDQLTYNVIINGFCRLGQVDKARTIFGFMRKNEC 293
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
EP+ F Y ++ G+ R G LE++ + +M+S G D V ++ H + +
Sbjct: 294 EPNAFNYATLMNGHSRKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVDEGID 353
Query: 281 WLQKMKDSGIPFSVRTYN 298
+++M++ G V TYN
Sbjct: 354 LVREMREKGCKADVVTYN 371
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
S AF + + E + P LV + +I L + G+ +EA L E + K +L
Sbjct: 204 SETAFRVLDEMREYTCGDVRPNLVTYSTLIGGLCRAGKMKEAFELFEEMIEKDHIVPDQL 263
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--------LKSMISGLC 200
Y +I+ FC RL Q+ + + R+ ++++G
Sbjct: 264 T--YNVIINGFC-------------RLGQVDKARTIFGFMRKNECEPNAFNYATLMNGHS 308
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
G+ + EEM+ G+EP Y +I R G +++ +V +M G + D V
Sbjct: 309 RKGELENLRMVFEEMKSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVREMREKGCKADVV 368
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
N+++ + + L+ + G+ +V +Y V+NS CS
Sbjct: 369 TYNLLIEGLCKDKRMVEAMDLLRSLPLEGVQLNVASYRIVMNSLCS 414
>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
Length = 524
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 85/178 (47%), Gaps = 16/178 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A ++ EMR + G+ P + Y +I G+ ++G +ED ++ ++M +
Sbjct: 152 TVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLT 211
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CS 305
G V N ++ Y D +L + + + M GI +V TYN ++++ S
Sbjct: 212 KGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARAS 271
Query: 306 TIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
++L+++ N F + ++N ++ + V +E+ V A+ + S
Sbjct: 272 DAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTS 329
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D YA L ++ + S V + +I+G C+ G +A + EEM KG+ + Y
Sbjct: 272 DAYAVLEEMQKNGFSPDVFTYNI--LINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTS 329
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+IY + R G +++ +R+ N G R D V N +++S+ ++ R + +M+
Sbjct: 330 LIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKR 389
Query: 290 IPFSVRTYNSVL 301
IP TYN+++
Sbjct: 390 IPPDDMTYNTLM 401
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 35/218 (16%)
Query: 120 FLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ-- 177
F+D + A +LE + K G V Y LI+ +CK +++ + + ++Q
Sbjct: 265 FMDARASDAYA---VLEEMQKNGFSPD--VFTYNILINGYCKEGNEKKALEVFEEMSQKG 319
Query: 178 ----LVNSSSSVYV---KRQ----------ALK-----------SMISGLCEMGQPHEAE 209
V +S +YV K Q A+K ++I+ C G A
Sbjct: 320 VRATAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAY 379
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
++ EM K + P Y ++ G+ LG L++ ++++M G + D V N ++S Y
Sbjct: 380 EIMAEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGY 439
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ + +M D G ++ TYN+++ I
Sbjct: 440 SMKGDIKDALRVRDEMMDKGFNPTLMTYNALIQGLCKI 477
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYARLNQLVNSSS 183
G+ +EA TLI E ++K G + ++ Y LI + K D K +++ N +
Sbjct: 408 GRLDEARTLIDE-MTKRGIQPD--LVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTL 464
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
Y ++I GLC++ Q +AENL++EM KG+ P Y +I G
Sbjct: 465 MTY------NALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEG 508
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 12/154 (7%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI +CK D+ + FD+ + V S+ +Y ++I G C++G+
Sbjct: 186 YATLISGWCKIGRMEDAVKVFDEMLTKGE--VAPSAVMY------NALIGGYCDVGKLDV 237
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A E+M +G+ + Y +++ D ++ +M+ +G D N++++
Sbjct: 238 ALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILIN 297
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
Y + + ++M G+ + TY S++
Sbjct: 298 GYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLI 331
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID+ CK ++ + +++ S S+V ++I GLC+ + +A L
Sbjct: 478 YNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAV-----TFNTLIDGLCKAKRIDDATEL 532
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
IE+M +GL+PS Y I+ Y + G L+ I+ M ++G +D V +++
Sbjct: 533 IEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCK 592
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ M+ GI + + YN V+ S
Sbjct: 593 AGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 624
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC++G PH L EEM+ G P Y +I +G L + ++ +MES+G
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
TV N ++ + + +M GI S T+N++++
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDG 519
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC MG+ A +L++EM G S Y II + +E+ E + +QM++ G
Sbjct: 446 LIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHG 505
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIM 308
V N ++ + +++M G+ S TYNS+L
Sbjct: 506 ISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAA 565
Query: 309 SMLQDLNSNDFPLSILELTEVLN 331
+L+ + +N F + ++ ++N
Sbjct: 566 DILETMTANGFEIDVVTYGTLIN 588
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ + LC+ G A +++ M +G +P F Y +I + G L++ + IVNQM
Sbjct: 305 TFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR 364
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G DT N ++ + N L + +++ G+ V T+N ++N+
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINA 414
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 52/125 (41%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SS +V +++ G E G A + +M G P+ +I GY ++G +
Sbjct: 222 SSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRV 281
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
ED + + +DG D V N + + +S + + M G V TYN+V
Sbjct: 282 EDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 341
Query: 301 LNSCS 305
+N S
Sbjct: 342 INCLS 346
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV- 247
R + +I L G E L+ EMR +G E + + Y RL +D +V
Sbjct: 89 RAVYEEIIQKLGTAGAFDLMEGLVREMRREGHEAGAGVVRSFVESYARLRRFDDAVDLVR 148
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---- 303
NQ+ + G + DT N +L+ + + + + +M D GI V T N+++ +
Sbjct: 149 NQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRA 208
Query: 304 --CSTIMSMLQDLNSN 317
T + ML++++S+
Sbjct: 209 HQVRTAVLMLEEMSSH 224
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R + +I+G C+MG+ +A I++ G EP Y ++ + G + ++++
Sbjct: 265 RVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMD 324
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
M +G D N V++ + EL + +M D G T+N+++
Sbjct: 325 LMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 377
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 103/259 (39%), Gaps = 48/259 (18%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L KQ + EEAE + + + SR + + LID CK +KR DD +
Sbjct: 481 IIDALCKQMRIEEAEEVFDQMDAHGISRS---AVTFNTLIDGLCK--AKR-IDDATELIE 534
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q+V NS + Y K+ LK ++I+GLC+ G
Sbjct: 535 QMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAG 594
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A L+ MR+KG+ P+ Y +I R L D + +M G D +
Sbjct: 595 RTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYK 654
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323
+V L R +++ D + + + +S + L +L +D+ +S
Sbjct: 655 IVFRG------LCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISA 708
Query: 324 LELT---EVLNEEEVSVVK 339
+EL E +VS ++
Sbjct: 709 IELIIEKAKFRESDVSAIR 727
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 48/111 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++I LC Q A ++EEM + P + ++ G+ G +E R+ +M
Sbjct: 198 LNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMM 257
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G V N++++ Y + + ++QK G TYN+ ++
Sbjct: 258 ETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVH 308
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G EA+ L++E +++ G + + Y LID CK +
Sbjct: 371 LINGLCKVGDLREAKKLVIE-MTQRGLKPDKFT--YTMLIDGCCKEGD---LESALEIRK 424
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + + A ++ISG C GQ EAE + EM G++P Y +I+G+ +
Sbjct: 425 EMV--KEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ +++ +M+ DG V N++L+ ++ + L M + G+ T
Sbjct: 483 KGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDIT 542
Query: 297 YNSVL 301
YN +L
Sbjct: 543 YNILL 547
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFC-KHDSKRGFDDTY 172
+I L K+GQ ++A L LE +R LV + + LI+ C + G +
Sbjct: 301 LINGLCKEGQLDDANKLFLEMC------DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
L + V Y ++I+GLC++G EA+ L+ EM +GL+P F Y +I
Sbjct: 355 QMLRKGVKPDVITY------NTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G LE I +M +G +D V ++S + ++ L++M ++GI
Sbjct: 409 GCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKP 468
Query: 293 SVRTYNSVLNS 303
TY V++
Sbjct: 469 DDATYTMVIHG 479
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 116/286 (40%), Gaps = 33/286 (11%)
Query: 31 LTARLTKQGQRFLSSLALAVT-----RDSKAASRLISKFVASSPQFIALNALSHLLSPDT 85
L AR T Q S L A T D+ RL+ K P L+ +
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205
Query: 86 THPRLSSLAFPLYMRITEESWFQWNPKLVAE---IIAFLDKQGQREEAETLILETLSKLG 142
T P A+ Y I + + P V + ++ L K+ + EA+ L E +G
Sbjct: 206 TSP-----AWAFYEEILDCGY----PPDVCKFNVLMHRLCKEHKINEAQLLFGE----IG 252
Query: 143 SRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
R R V+ + LI+ +CK G D RL + + + V+ +I+GLC+
Sbjct: 253 KRGLRPTVVSFNTLINGYCK----SGNLDQGFRLKRFM-MENRVFPDVFTYSVLINGLCK 307
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
GQ +A L EM +GL P+ + +I G+ G + I QM G + D +
Sbjct: 308 EGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVIT 367
Query: 262 SNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
N + L GD E ++V+ +M G+ TY +++ C
Sbjct: 368 YNTLINGLCKVGDLREAKKLVI---EMTQRGLKPDKFTYTMLIDGC 410
>gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula]
gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula]
gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 86/195 (44%), Gaps = 13/195 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LI+S K ++ + L + SSS V+ A+ MI + G+ +EA L
Sbjct: 445 YCSLINSLGKAKRYEAANELFQELKENCGSSS---VRVYAV--MIKHFGKCGRFNEAMGL 499
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM+ G P + Y +I G R ++++ + ME +G D N++L+
Sbjct: 500 FNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEENGCNPDINSHNIILNGLAR 559
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + KMK S I +YN+VL S +++++NS F ++
Sbjct: 560 TGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEEATKLMKEMNSKGFEYDLIT 619
Query: 326 LTEVLNEEEVSVVKE 340
+ +L E V V E
Sbjct: 620 YSSIL--EAVGKVDE 632
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 90/192 (46%), Gaps = 17/192 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L ++G E+ L E S+ G + V Y LI +F K + DD+ RL
Sbjct: 201 VILMLMQEGHHEKVHELYNEMCSE-GHCFPDTVT-YSALISAFGKLNR----DDSAVRLF 254
Query: 176 ----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ ++ +Y +++ ++G+ EA NL+ EMR++ P+ + Y +I
Sbjct: 255 DEMKENGLQPTAKIYT------TLMGIYFKLGKVEEALNLVHEMRMRRCVPTVYTYTELI 308
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G+ G +ED + M DG + D V N +++ G + L V ++M+
Sbjct: 309 RGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFEEMRLLNCT 368
Query: 292 FSVRTYNSVLNS 303
+V TYN+++ S
Sbjct: 369 PNVVTYNTIIKS 380
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 82/182 (45%), Gaps = 7/182 (3%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
E+I L K G+ E+A + + + K G + V+ NLI+ + D + + + +
Sbjct: 306 ELIRGLGKSGRVEDAYG-VYKNMLKDGCKPD--VVLMNNLINILGRSDRLKEAVELFEEM 362
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+L+N + +V +KS+ + P EA + +E M+ G+ PS F Y +I G+
Sbjct: 363 -RLLNCTPNVVTYNTIIKSLFE---DKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFC 418
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ +E ++ +M+ G +++S G Q++K++ SVR
Sbjct: 419 KTNRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVR 478
Query: 296 TY 297
Y
Sbjct: 479 VY 480
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 83/207 (40%), Gaps = 19/207 (9%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E+ Q K+ ++ K G+ EEA L+ E + R V Y LI K
Sbjct: 258 KENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMR---RCVPTVYTYTELIRGLGKS 314
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+D Y ++ V + ++I+ L + EA L EEMR+ P
Sbjct: 315 GR---VEDAYGVYKNMLKDGCKPDV--VLMNNLINILGRSDRLKEAVELFEEMRLLNCTP 369
Query: 223 SGFEYKCIIYGYGRLGLLED------MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+ Y II L ED + +M+ DG + ++++ + N +
Sbjct: 370 NVVTYNTIIKS-----LFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKTNRVE 424
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L L++M + G P Y S++NS
Sbjct: 425 KALLLLEEMDEKGFPPCPAAYCSLINS 451
>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Cucumis sativus]
Length = 1032
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 11/190 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ II L K G+ +EA + L+ L K G V Y +LI FCK Y
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFL-KTGVVPD--VFLYNSLISGFCKEGDIEKASQLYDE 686
Query: 175 -LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L+ +N + VY ++I+GLC++G+ +A L +E+ K L P Y II G
Sbjct: 687 MLHNGINPNIVVY------NTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDG 740
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + G L + ++ ++M S G D +++ G L + + + + + S
Sbjct: 741 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVG-S 799
Query: 294 VRTYNSVLNS 303
+ +NS+++S
Sbjct: 800 LSAFNSLIDS 809
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C+ + EA+ + E M GL P+ F Y +I G+ + G +E+ RI ++M + G
Sbjct: 317 LVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRG 376
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ V N ++ E+++ + +M +G+ TYN +++
Sbjct: 377 LKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDG 425
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 9/175 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G EA L E +SK S + + YC LID K + + Q S
Sbjct: 743 KSGNLTEAFKLFDEMISKGISPDGYI---YCILIDGCGKEGNLEKALSLFHEAQQKSVGS 799
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S A S+I C+ G+ EA L ++M K L P+ Y +I YG+ ++E+
Sbjct: 800 LS------AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEE 853
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
E++ ME+ +T+ +L SY +M+ + M+ GI Y
Sbjct: 854 AEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAY 908
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 100/234 (42%), Gaps = 32/234 (13%)
Query: 123 KQGQREEAETLILETLSK-LGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQ 177
K+G E+A +L E K +GS + +LIDSFCKH +++ FDD
Sbjct: 778 KEGNLEKALSLFHEAQQKSVGSLSA-----FNSLIDSFCKHGKVIEARELFDD------- 825
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+V+ + + + G EM + EAE L +M + + P+ Y ++ Y ++
Sbjct: 826 MVDKKLTPNIVTYTILIDAYGKAEMME--EAEQLFLDMETRNIIPNTLTYTSLLLSYNQI 883
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G M + ME+ G D + ++ S+Y + + L K GI +
Sbjct: 884 GNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVF 943
Query: 298 NSVL------NSCSTIMSMLQDLNSNDFPLS-------ILELTEVLNEEEVSVV 338
++++ ST++ +L ++ + LS +L + NE+E S V
Sbjct: 944 DALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKV 997
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D FCK + A+L SS + R ++I G + G EA +
Sbjct: 314 YTLLVDGFCKQKRSKE-----AKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRI 368
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM +GL+ + Y +I G + G + + N+M G DT N+++ Y
Sbjct: 369 KDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLK 428
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315
+++++ L +MK + S TY SVL S S LQ N
Sbjct: 429 SHDMAKACELLAEMKARKLTPSPFTY-SVLISGLCHSSDLQKAN 471
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC + EA+ L+ +M KG++P+ Y I Y + G ++ ER M S G
Sbjct: 527 LIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSG 586
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ V +++ + D + + M + G+ +R Y+++++S S
Sbjct: 587 IVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLS 637
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G +A L +EM G+ P+ Y +I G +LG + + +++E
Sbjct: 666 SLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEK 725
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D V + ++ Y L+ +M GI Y +++ C
Sbjct: 726 DLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCG 777
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC +A ++++M G++P+ F Y +I Y + E ++ M ++G
Sbjct: 457 LISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANG 516
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D C N ++ ++ + L M + GI + TY + +N
Sbjct: 517 VLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 15/148 (10%)
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMIS---------------GLCEMGQPHEAENLIEEM 215
TY L + S + V + K M+S G C++G EA + + M
Sbjct: 558 TYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCM 617
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
KGL P Y II+ + G ++ + + G D N ++S + ++
Sbjct: 618 LEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDI 677
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M +GI ++ YN+++N
Sbjct: 678 EKASQLYDEMLHNGINPNIVVYNTLING 705
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C++ + +A NL EM K + P+ Y +I G + G + ++V+QM G
Sbjct: 341 LINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRG 400
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ + N ++ + +++ + + + K KD GI S+ TY +++ + D+
Sbjct: 401 VPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGY--DI 458
Query: 315 NSNDFPLSILELTEV-LNEEEVSVVKELEDSSVLDEAMKWD 354
N + + I + L +E +S++ +++DSS + A+ ++
Sbjct: 459 TVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYE 499
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI CK R D R++ +LV ++ +Y ++I G+C+ ++A +
Sbjct: 163 YGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY------NTVIYGMCKDKHVNDAFD 216
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM KG+ P+ Y +I G+ +G L+D + N++ + + D N+++ +
Sbjct: 217 LYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFC 276
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ M GI V TYNS+++
Sbjct: 277 KDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDG 309
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 99/221 (44%), Gaps = 21/221 (9%)
Query: 107 FQWNPKLVA-----------EIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCN 154
F ++ KLVA +I L K G+ A L+ L ++ + +L + Y
Sbjct: 145 FLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA----LDLLQRVDGKLVQLNAVMYNT 200
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+I CK + +D + +++V+ S V + ++ISG +G+ +A +L +
Sbjct: 201 VIYGMCK---DKHVNDAFDLYSEMVSKGISPNVVTYS--ALISGFFVVGKLKDAIDLFNK 255
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ ++ ++P G+ + ++ G+ + +++ + + M G D V N ++ Y E
Sbjct: 256 IILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKE 315
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315
++ M G+ +R+YN ++N I + + +N
Sbjct: 316 VNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMN 356
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 85/185 (45%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K ++ + L + SSS+ + MI L + G+ +A +L
Sbjct: 440 YCSLIDALGKAKRYDLANELFQELKENCGSSSA-----RVYAVMIKHLGKAGRLDDAVDL 494
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P+ + Y ++ G R G+L++ + +M+ G D N++L++
Sbjct: 495 FDEMNRLGCTPNVYAYNALMSGLARAGMLDEALTTMRRMQDHGCIPDINSYNIILNALAK 554
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK S I +YN+VL + S +++++N+ F ++
Sbjct: 555 TGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAAKLMKEMNAIGFDYDLIT 614
Query: 326 LTEVL 330
+ +L
Sbjct: 615 YSSIL 619
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 72/156 (46%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI +FCK + D LN++ + ++ +Y AL L ++ H
Sbjct: 229 YSALISAFCKLGRQ---DSAIWLLNEMKDNGMQPTAKIYTMLMAL------LFKLDNVHG 279
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EEMR + P F Y +I G G+ G L++ ++M +G R DTV N +++
Sbjct: 280 ALGLFEEMRHQYCRPDVFTYTELIRGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMIN 339
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G L + ++M+ SV TYN+++ +
Sbjct: 340 FLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKA 375
>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
Length = 761
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 10/184 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNS 181
K G + AE ++ + K G E YC+LI+ C++D R A L + +
Sbjct: 333 KMGMLQNAEKILQGAICK-GFVPDEFT--YCSLINGLCQNDEIDRALALFNAALGKGLKP 389
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ +Y +I GLC+ G +A ++ EM G + Y +I G ++G +
Sbjct: 390 TVILY------NMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVS 443
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D ++N + G D N ++ Y ++ + L KM G+ V TYNSVL
Sbjct: 444 DANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVL 503
Query: 302 NSCS 305
N S
Sbjct: 504 NGLS 507
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 64/127 (50%), Gaps = 7/127 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ EAE + ++ GLEP GF Y +I GY ++G+L++ E+I+
Sbjct: 291 TLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICK 350
Query: 254 GTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C--STIM 308
G D T CS +++ ++E+ R + G+ +V YN ++ C I+
Sbjct: 351 GFVPDEFTYCS--LINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLIL 408
Query: 309 SMLQDLN 315
LQ +N
Sbjct: 409 QALQMMN 415
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 6/168 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI CK+ + + L++LVN + ++I G C+MG A
Sbjct: 286 VVTYNTLICGLCKNSN---VVEAEKYLHKLVNGG--LEPDGFTYNTLIDGYCKMGMLQNA 340
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E +++ KG P F Y +I G + ++ + N G + + NM++
Sbjct: 341 EKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKG 400
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
+ + + + +M ++G + TYN V+N M + D N+
Sbjct: 401 LCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCK-MGCVSDANN 447
>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
Length = 897
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A +++ EMR + G+ P+ + Y +I G+ ++G +++ ++ ++M +
Sbjct: 519 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 578
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N ++ Y D +L +L+ +M + G+ +V TYN ++++
Sbjct: 579 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 630
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+GQ +E + L E + + G R +LVL Y LI+S H + D + +
Sbjct: 697 LIYALSKKGQVQETDKLFDEAVRR-GIRP-DLVL-YNALINS---HSTSGNIDRAFEIMG 750
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +++ GLC +G+ EA LI+EM +G++P Y +I GY
Sbjct: 751 EM--EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYSM 808
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G ++D RI N+M + G + N + L G ++ MV ++M ++GI
Sbjct: 809 KGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV---KEMVENGITPD 865
Query: 294 VRTYNSVLNSCST 306
TY S++ +T
Sbjct: 866 DSTYISLIEGLTT 878
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 7/213 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A + + E N +I+ K G+ +EA + E L+K G + E V+ Y
Sbjct: 533 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK-GEVKPEAVM-YN 590
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LI +C D +++V ++ V L ++ L G+ EA L+E
Sbjct: 591 ALIGGYCDQGK---LDTALLYRDRMVERGVAMTVATYNL--LVHALFMDGRGTEAYELVE 645
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM KGL P F Y +I G+ + G ++ I M G R V ++ +
Sbjct: 646 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKG 705
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++ + GI + YN+++NS ST
Sbjct: 706 QVQETDKLFDEAVRRGIRPDLVLYNALINSHST 738
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G C+ G+ H+A ++EEM+ K ++P+ Y I+ G ++ L++ + +
Sbjct: 599 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 658
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ V + ++ +G + L L++M G+ +V T+NS+L++
Sbjct: 659 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 712
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 23/211 (10%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R +E ++ L ++ L ++GQ +A L+ E K E ++VL Y ID
Sbjct: 202 LRQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV--KGSCLEPDIVL-YNVCIDC 258
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK-------SMISGLCEMGQPHEAENL 211
F K + D + ++L K Q LK SMI LC+ G+ EAE L
Sbjct: 259 FGKAGN---VDMAWKFFHEL---------KAQGLKPDDVSYTSMIWVLCKAGRLGEAEEL 306
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M + P + Y +I GYG G ED +++ ++ G V N +L+ G
Sbjct: 307 FAQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGK 366
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ + + MK P S TYN +++
Sbjct: 367 KRKVDEALSLFEVMKKDAEPNS-STYNIIID 396
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 152 YCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y ++D FCK + ++ + V + + Y +++ GL ++ + EA
Sbjct: 601 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATY------GAIVDGLAKIDRLDEAYM 654
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EE + KG+E + Y +I G+G++G +++ I+ +M G + N +L +
Sbjct: 655 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 714
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSIL 324
E++ ++ Q MK+ P + TY+ ++N + QD+ +++
Sbjct: 715 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 774
Query: 325 ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
T +++ ++ V + D+ L E K + G
Sbjct: 775 TYTTMIS--GLAKVGNITDAYSLFERFKANGG 804
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP V +I L K+GQ +EA L E + G +V Y +LI +F H K
Sbjct: 455 NPDCVTYCSLIDGLGKKGQVDEAYRL-FEKMLDAGHNANPVV--YTSLIRNFFIHGRK-- 509
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D + +L+ + L + + + + G+ + + E++R G P Y
Sbjct: 510 -EDGHKIFKELIRRGCKPDL--TLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 566
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I+G + G + I + M+ G +D N V+ + ++ + L++MK+
Sbjct: 567 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 626
Query: 288 SGIPFSVRTYNSVLNSCSTI 307
+ +V TY ++++ + I
Sbjct: 627 KCVQPTVATYGAIVDGLAKI 646
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/109 (19%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC + + ++A ++M+ +GL P+ Y +I G ++G + D + + +++G
Sbjct: 744 LINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANG 803
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++ + N ++ + G ++++ S+L++
Sbjct: 804 GIPDAASFNALIEGMSNANRAMEAYQVFEETRLRGCRINIKSCISLLDA 852
>gi|298709514|emb|CBJ48529.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 623
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 8/125 (6%)
Query: 200 CEM-GQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
C++ G EA L+++MR K G+EP Y C + G G E IV M G
Sbjct: 148 CDLAGMWREAVGLLDDMREKTGVEPDLVCYNCAVKACGSSGEFEQALSIVETMGERGVAP 207
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIMSML 311
D + +++ G+ + R V LQ MKD G+P + +N+ + +C S ++S+L
Sbjct: 208 DESTYSNAITACGNAGKAKRAVGLLQAMKDDGVPAGLVAHNAAIGACDKAGEFSLVLSVL 267
Query: 312 QDLNS 316
+D+ S
Sbjct: 268 KDMRS 272
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +A +++E M +G+ P Y I G G + ++ M+ DG V
Sbjct: 188 GEFEQALSIVETMGERGVAPDESTYSNAITACGNAGKAKRAVGLLQAMKDDGVPAGLVAH 247
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
N + + E S ++ L+ M+ +GI +Y ++SC
Sbjct: 248 NAAIGACDKAGEFSLVLSVLKDMRSAGIRPDAISYAGAISSC 289
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 15/210 (7%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRER---ELVLFYC 153
M E + F P ++ +I L K G++EE L+ ++ S+ R V + C
Sbjct: 366 MNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLV----ERMRSQPRCMPNTVTYNC 421
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID +CK + + ++N+ V L +++ G+C+ G+ + A
Sbjct: 422 -LIDGYCKASMIEAARELFDQMNK-----DGVPPNVVTLNTLVDGMCKHGRINGAVEFFN 475
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM+ KGL+ + Y +I + + +E + ++M G D + ++S
Sbjct: 476 EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAG 535
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L R L KMK++G + ++N ++N
Sbjct: 536 KLDRASFVLSKMKEAGFSPDIVSFNVLING 565
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LI+ CK + + ++N ++ V ++I GLC++G+ E
Sbjct: 340 VVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEG 399
Query: 209 ENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
L+E MR + P+ Y C+I GY + ++E + +QM DG + V N ++
Sbjct: 400 LGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVD 459
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H ++ V + +M+ G+ + TY +++ +
Sbjct: 460 GMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRA 495
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 71/152 (46%), Gaps = 7/152 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
L+D CKH G + + + + + ++ Y ++I C + +A L +
Sbjct: 457 LVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYT------ALIRAFCNVNNIEKAMELFD 510
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM G P Y +I G + G L+ ++++M+ G D V N++++ + N
Sbjct: 511 EMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKN 570
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+L L++M+++GI TYN++++ S
Sbjct: 571 KLDEAYEMLKEMENAGIKPDGVTYNTLISHFS 602
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGL + G+ A ++ +M+ G P + +I G+ R L++ ++ +ME+
Sbjct: 526 TLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENA 585
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V N ++S + + S ++KM G+ +V TY +++++
Sbjct: 586 GIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C + EA +++EM G++P G Y +I + + G R++ +M +G
Sbjct: 562 LINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEG 621
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
V ++ +Y + L + + M S +P + YN ++NS
Sbjct: 622 LVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINS 671
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN- 180
K + E+ E L E LSK + EL + Y +I + C++ + A L L N
Sbjct: 605 KANRIEDVENLFNELLSK----KMELNSIVYNIIIKAHCQNG------NVAAALQLLENM 654
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + S+I G+C +G +A++LI+EMR +G P+ Y +I GY +LG +
Sbjct: 655 KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM 714
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ E +M S + +++ Y + + L KMK+SGI V TYN +
Sbjct: 715 DTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVL 774
Query: 301 LNS 303
N
Sbjct: 775 TNG 777
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++GQ AE+ EM + P+ F Y +I GY +LG +E ++ +M+
Sbjct: 703 ALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES 762
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N++ + + N++ +M G+P TY ++++
Sbjct: 763 GIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 13/239 (5%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + L L L D H + L F L + + S N +I L G+
Sbjct: 451 PSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSN-----ALIHGLCGAGKLP 505
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA ++ E L + +R + Y LI FC G RL + + + +
Sbjct: 506 EASRIVKEMLERGLPMDR---ITYNALILGFCNEGKVEG----CFRLREEM-TKRGIQPD 557
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++ GLC +G+ +A L +E + GL + Y ++ GY + +ED+E + N
Sbjct: 558 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 617
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ S ++++ N+++ ++ + ++ + L+ MK GI + TY+S+++ I
Sbjct: 618 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNI 676
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 14/163 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + N+I++ CK + + ++ +L S + V +I+GLC+ G+ A
Sbjct: 243 VFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV-----TYNCIINGLCQNGRLDNA 297
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E+M VKG++P+ Y +I G +L + + ++++M G + V N ++
Sbjct: 298 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDG 357
Query: 269 YGDHNELSRMVLWLQKMKDSGI-----PFSVRTYNSVLNSCST 306
Y + + K+KD I P SV Y+ + C +
Sbjct: 358 YCKMGNIEGAL----KIKDVMISKNITPTSVTLYSLMQGFCKS 396
>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
Length = 951
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 102/212 (48%), Gaps = 13/212 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF LY + P +V + ++ L + GQ EA L E + K+G +
Sbjct: 276 AFSLYEGMVRSGVL---PDVVTLSALVDGLCRDGQFSEAYALFRE-MDKIGVAPNHVT-- 329
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC LIDS K ++RG ++ L ++V S V + +++ L + G+ EA+++
Sbjct: 330 YCTLIDSLAK--ARRG-SESLGLLGEMV--SRGVVMDLVMYTALMDRLGKEGKIEEAKDV 384
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ + + P+ Y ++ + R G ++ E+++ QME + V + +++
Sbjct: 385 LRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVK 444
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++KMKDSGI +V TY ++++
Sbjct: 445 RGCLGKAADYMRKMKDSGIAPNVVTYGTLIDG 476
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI CK D+ +A Q+++ S + +++ GL G+ EA+ ++ +
Sbjct: 753 LILGHCKSSH---LDNAFAIYAQMLHQGLSPNI--ATFNTLLGGLESAGRIGEADTVLSD 807
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ GLEP+ Y ++ GY + + R+ +M S G N ++S +
Sbjct: 808 MKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGM 867
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++ +MK G+ + TY+ +LN S +
Sbjct: 868 MNQAKELFSEMKRRGVLHTSSTYDILLNGWSKL 900
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 92/216 (42%), Gaps = 17/216 (7%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A +Y + E + N +V ++ L K G E AE L + ER L+L +
Sbjct: 486 ALDVYRDMLHEG-VEANNFVVDSLVNGLRKNGNIEGAEALFKDM------DERGLLLDHV 538
Query: 154 N---LIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
N L+D K + F + + ++ + VY I+ LC +G+ EA+
Sbjct: 539 NYTTLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVY------NVFINCLCTLGKFSEAK 592
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ ++EMR GLEP Y +I R G +++ +M+ + + + + ++
Sbjct: 593 SFLKEMRNTGLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGL 652
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + + L +M +G + T+ VL +CS
Sbjct: 653 LEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQACS 688
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE---YKCIIYGYGRLGLLEDMERIVN 248
+ + + GLC G EA L EM V+G G + + +I GY ++ + +V
Sbjct: 153 VSTALVGLCRTGLVGEAAAL-AEMLVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVE 211
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+M + G +D V N +++ + + + +++MK G+ +V TY +++
Sbjct: 212 RMTTQGVALDVVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIG 265
>gi|255684866|gb|ACU27922.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684900|gb|ACU27939.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684902|gb|ACU27940.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684904|gb|ACU27941.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684906|gb|ACU27942.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684912|gb|ACU27945.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684916|gb|ACU27947.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684920|gb|ACU27949.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684924|gb|ACU27951.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684926|gb|ACU27952.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684928|gb|ACU27953.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684954|gb|ACU27966.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684960|gb|ACU27969.1| At1g03560-like protein [Arabidopsis thaliana]
Length = 193
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 1 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 54
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 55 -VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 113
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +L+
Sbjct: 114 GCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSG 164
>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
Length = 318
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I GLC+MG EA + EM KG+EP+ + Y ++ Y + G E ++ ++M
Sbjct: 140 TAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVYDEMLGK 199
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N++++ + H + + ++M GI V TYN ++
Sbjct: 200 GLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQG 249
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ID CK D+ N++V+ + A S+++ C+ G A +
Sbjct: 138 YTTAIDGLCKMGC---IDEARQIWNEMVDKG--MEPNEYAYCSLVAYYCKAGDFEMARKV 192
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM KGL+ S ++ G+ G +++ + +M G D + N+++
Sbjct: 193 YDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCK 252
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
LS + +++ SG+ SV T+ ++++
Sbjct: 253 AGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDT 284
>gi|115472657|ref|NP_001059927.1| Os07g0548300 [Oryza sativa Japonica Group]
gi|28564790|dbj|BAC57720.1| putative crp1 protein [Oryza sativa Japonica Group]
gi|113611463|dbj|BAF21841.1| Os07g0548300 [Oryza sativa Japonica Group]
Length = 661
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M +DG TV
Sbjct: 516 GRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 575
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ ++ LQ MK++G+ V TY +++ +
Sbjct: 576 NSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L + EAE L LE ++ R R Y L+ + K S + +
Sbjct: 259 VTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVKIGSLKNAEQV 314
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 315 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 369
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M + G R D N+++ ++G +N L + +M++ GI
Sbjct: 370 AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIE 429
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 430 PDVVTWNTLIDA 441
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 149 VLFYCNLIDSFCK---HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
V+ + LID+ CK HD D N + +++ MI+ L E +
Sbjct: 432 VVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTT--------YNIMINLLGEEQRW 483
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG + + +
Sbjct: 484 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHAL 543
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF 319
+++Y + ++ M+ G+ S NS++N+ + S+LQ + N
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGL 603
Query: 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
++ T ++ + + V++ E V+ E M
Sbjct: 604 RPDVITYTTLM--KALIRVEQFEKVPVIYEEM 633
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
A ++I G C+ G+ ++A L+EEM+VKG P+ Y +I G ++ L++ + +
Sbjct: 615 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 674
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S+G +++ V + ++ +G + L ++++ G+ +V T+N +L++
Sbjct: 675 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 728
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 104/237 (43%), Gaps = 18/237 (7%)
Query: 66 ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG 125
A S I + ALS + PD P L + +E ++ N L +I ++G
Sbjct: 194 AFSAYTILIGALSEVREPD---PML------ILFHQMQELGYEVNVHLFTTLIRVFAREG 244
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
+ + A +L+ E K S + ++VL Y ID F K D ++ +++ S +
Sbjct: 245 RVDAALSLLDEM--KSNSLDADIVL-YNVCIDCFGKAGK---VDMSWKFFHEM--KSHGL 296
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
SMI LC+ + EA L E++ P + Y +I GYG G ++
Sbjct: 297 MPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYG 356
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ + ++ G+ + N +L+ G + + ++MK +P +V TYN +++
Sbjct: 357 LLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILID 412
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 113/259 (43%), Gaps = 22/259 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + +I L K G+ ++A +L E + G +V Y +LI SF K K +
Sbjct: 473 NAVTFSSLIDGLGKCGRVDDAYSL-YEKMLDCGHVPGAIV--YTSLIRSFFKCGRK---E 526
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D + ++V++ S + + + + + + G+ + L E+ G P Y
Sbjct: 527 DGHKIYKEMVHTGCSPDL--TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 584
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+G + GL + + M+ G +DT N V+ + ++++ L++MK G
Sbjct: 585 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 644
Query: 290 IPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EEEV 335
P +V TY SV++ + I + ++ SN L+++ + +++ +E
Sbjct: 645 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 704
Query: 336 SVVKELEDSSVLDEAMKWD 354
+++EL + W+
Sbjct: 705 LIMEELMQKGLTPNVYTWN 723
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +ID FCK + Y L ++ V V S+I GL ++ + EA
Sbjct: 617 YNAVIDGFCKSGK---VNKAYQLLEEMKVKGHPPTVV---TYGSVIDGLAKIDRLDEAYM 670
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EE + G++ + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 671 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 730
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ ++ Q MKD P + TY+ ++N
Sbjct: 731 KAEEINEALICFQSMKDLKCPPNQITYSILING 763
>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
Length = 690
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/202 (21%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FC+ K+ + Y L ++ + +++SG C+ G + L
Sbjct: 391 YNILIAGFCR---KKRLHEAYELLQEM--KEVGIRPDVCTYNTLLSGSCKAGDFAAVDEL 445
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +M G +PS + +++GY ++G +++ RI+ M+ G + V N ++
Sbjct: 446 LGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCK 505
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
++ + +MK+ +P +V T+N ++L+ L + P EL + +
Sbjct: 506 RGDVDLAIELFDEMKEKSVPANVTTFN----------ALLKGLRDKNMPEKAFELMDQMR 555
Query: 332 EEEVSVVKELEDSSVLDEAMKW 353
EE D +D M+W
Sbjct: 556 EERC-----FPDYVTVDVLMEW 572
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ L K G+ +EA + + +S + V + C LID+FC+ + Y +
Sbjct: 215 VVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNC-LIDAFCRVGN---ISMAYELVE 270
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV------------------- 217
++ N V L +++ GLC G+ A E R
Sbjct: 271 KMENEG--VPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVGAL 328
Query: 218 ------------------KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
+G P Y +I G + G LED + + M+ G ++DT
Sbjct: 329 LHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKLDT 388
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
N++++ + L LQ+MK+ GI V TYN++L SC
Sbjct: 389 KAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSC 434
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y L++ CK D L+ + + L +++ GLC+ G+
Sbjct: 169 RPDVVTYGILVNGLCKAGR---VGDALRVLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRV 225
Query: 206 HEAENLIEEM--RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
EA +E+ V G P+ Y C+I + R+G + +V +ME++G + V N
Sbjct: 226 QEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENEGVPQNIVTLN 285
Query: 264 MVLSS 268
++
Sbjct: 286 TIVGG 290
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCI 230
AR+ L+ +SV +++GLC+ G+ +A +++ M + L+ P +
Sbjct: 156 ARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALRVLDGMSRQDLDIRPDVVTLNTV 215
Query: 231 IYGYGRLGLLEDMERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ G + G +++ V Q S G +TV N ++ ++ +S ++KM++
Sbjct: 216 VDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAYELVEKMENE 275
Query: 289 GIPFSVRTYNSVLNS 303
G+P ++ T N+++
Sbjct: 276 GVPQNIVTLNTIVGG 290
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G ++A + EE RV G + F Y +I G +G L D ++ +M+ D
Sbjct: 409 TLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + ++ N ++S + S V KM D+G +V TYN++++
Sbjct: 469 GCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDG 518
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 108/276 (39%), Gaps = 36/276 (13%)
Query: 53 DSKAASRLISKFVASSPQFIALNALSHL---LSPDTTHPRLSSLAFPLYMRITEESWFQW 109
D RL+ + + S P A AL+HL +S P L F L R+ S
Sbjct: 9 DPPPIHRLL-ELIKSEPD--ATAALAHLELLVSTRPAFPPPQPLLFHLLRRLATSS---- 61
Query: 110 NPKLVAEIIAFLDKQGQR----EEAETLILETLSKLGSRERELVLFY-------CN---- 154
P + ++ L + R E A ++L S+ + L F CN
Sbjct: 62 -PSHLPCLLNLLPRLRHRPRFSESAALVVLSAFSRAIMPDAALDAFRALPSILGCNPGIR 120
Query: 155 ----LIDSFCKHDSKRGFDDTYARLNQLVNSSSS--VYVKRQALKSMISGLCEMGQPHEA 208
L+D+F + R F D A L + + + Q ++ LC G A
Sbjct: 121 SHNALLDAFVR---ARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRA 177
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + +R + + P Y ++ G + L+ ++++M G + D VC N +L
Sbjct: 178 VTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGG 237
Query: 269 YGDHNELSR-MVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + M +W + +KD G ++ TYN +L+
Sbjct: 238 CFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + K G + + Y LI FC+ Y+++ N S +
Sbjct: 461 VYEKMDKDGCKPNSHI--YNALISGFCQVYRTSDAVRIYSKMAD--NGCSPTVI---TYN 513
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EA ++ EM G P Y +I G ++D I Q+
Sbjct: 514 TLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYK 573
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
G +VD + N+++ ++ + MK+ P ++ TYN++++
Sbjct: 574 GLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ GLC+ G+ E + E M L+P Y +I+G R G ++ R+ +++ G
Sbjct: 270 MLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTG 329
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+D N ++ + + + +G+ ++RTYN
Sbjct: 330 LVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYN 372
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 12/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN- 180
K + E+ E L E LSK + EL + Y +I + C++ + A L L N
Sbjct: 582 KANRIEDVENLFNELLSK----KMELNSIVYNIIIKAHCQNG------NVAAALQLLENM 631
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + S+I G+C +G +A++LI+EMR +G P+ Y +I GY +LG +
Sbjct: 632 KSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQM 691
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ E +M S + +++ Y + + L KMK+SGI V TYN +
Sbjct: 692 DTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVL 751
Query: 301 LNS 303
N
Sbjct: 752 TNG 754
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++GQ AE+ EM + P+ F Y +I GY +LG +E ++ +M+
Sbjct: 680 ALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKES 739
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N++ + + N++ +M G+P TY ++++
Sbjct: 740 GIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 789
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 13/239 (5%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + L L L D H + L F L + + S N +I L G+
Sbjct: 428 PSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSN-----ALIHGLCGAGKLP 482
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA ++ E L + +R + Y LI FC G RL + + + +
Sbjct: 483 EASRIVKEMLERGLPMDR---ITYNALILGFCNEGKVEG----CFRLREEM-TKRGIQPD 534
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++ GLC +G+ +A L +E + GL + Y ++ GY + +ED+E + N
Sbjct: 535 IYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVENLFN 594
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ S ++++ N+++ ++ + ++ + L+ MK GI + TY+S+++ I
Sbjct: 595 ELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNI 653
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 14/163 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + N+I++ CK + + ++ +L S + V +I+GLC+ G+ A
Sbjct: 220 VFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVV-----TYNCIINGLCQNGRLDNA 274
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E+M VKG++P+ Y +I G +L + + I+++M G + V N ++
Sbjct: 275 FELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDG 334
Query: 269 YGDHNELSRMVLWLQKMKDSGI-----PFSVRTYNSVLNSCST 306
Y + + K+KD I P SV Y+ + C +
Sbjct: 335 YCKMGNIEGAL----KIKDVMISKNITPTSVTLYSLMQGFCKS 373
>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Glycine max]
Length = 623
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 97/212 (45%), Gaps = 18/212 (8%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSREREL--VLFYCNLIDSFCKHDSKR 166
P LV +I L K+ + +EA+ L SK+ +E L ++ + LID C + +
Sbjct: 424 PTLVTYTSLIYVLGKRNRMKEADAL----FSKI-QQEGLLPDIIVFNALIDGHCANGN-- 476
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D + L ++ N V +++ G C G+ EA L++EM+ +G++P
Sbjct: 477 -IDRAFQLLKEMDNMK--VLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHIS 533
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I GY + G ++D R+ ++M + G + N ++ + E L++M
Sbjct: 534 YNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMV 593
Query: 287 DSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
GI TY S++ + T+ DL ND
Sbjct: 594 SKGITPDDSTYLSIIEAMETV----DDLEGND 621
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 14/190 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYA 173
I+ L K+G+ EEA LI + L E LV + Y LID +C +K D YA
Sbjct: 292 FISGLCKEGRLEEASGLICKML------EGGLVPNAVTYNALIDGYC---NKGDLDKAYA 342
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
++++ S + I L G+ +A+N+I+EMR KG+ P + +I G
Sbjct: 343 YRDEMI--SKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILING 400
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R G + ++++M G + V ++ G N + K++ G+
Sbjct: 401 YCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPD 460
Query: 294 VRTYNSVLNS 303
+ +N++++
Sbjct: 461 IIVFNALIDG 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G+ A + + M+ KGLEP + Y I G + G LE+ ++ +M
Sbjct: 256 TIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEG 315
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ Y + +L + + +M GI S+ TYN +++
Sbjct: 316 GLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHA 365
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S ISGLC+ G+ EA LI +M GL P+ Y +I GY G L+ ++M S
Sbjct: 291 SFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISK 350
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G V N+ + + + +++M++ G+ T+N ++N
Sbjct: 351 GIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILING 400
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
YA + ++ N SS+Y MI+ LC+ G+ +A+ I M G++P+ Y II
Sbjct: 204 YAEMFRM-NIRSSLY----TFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTII 258
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+G+ G + I M+ G D N +S L + KM + G+
Sbjct: 259 HGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLV 318
Query: 292 FSVRTYNSVLNS 303
+ TYN++++
Sbjct: 319 PNAVTYNALIDG 330
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G ++A + EE RV G + F Y +I G +G L D ++ +M+ D
Sbjct: 409 TLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKD 468
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + ++ N ++S + S V KM D+G +V TYN++++
Sbjct: 469 GCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTVITYNTLIDG 518
Score = 45.4 bits (106), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 6/152 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSS--VYVKRQALKSMISGLCEMGQPHEAENLI 212
L+D+F + R F D A L + + + Q ++ LC G A L
Sbjct: 125 LLDAFVR---ARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVLRSLCARGDLDRAVTLF 181
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+ +R + + P Y ++ G + L+ ++++M + D VC N +L
Sbjct: 182 DSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKA 241
Query: 273 NELSR-MVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + M +W + +KD G ++ TYN +L+
Sbjct: 242 GEFEKVMRVWDKLVKDPGARPNLATYNVMLDG 273
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + K G + + Y LI FC+ Y+++ N S +
Sbjct: 461 VYEKMDKDGCKPNSHI--YNALISGFCQVYRTSDAVRIYSKMAD--NGCSPTVI---TYN 513
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EA ++ EM G P Y +I G ++D I Q+
Sbjct: 514 TLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYK 573
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
G +VD + N+++ ++ + MK+ P ++ TYN++++
Sbjct: 574 GLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDG 624
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ GLC+ G+ E + E M L+P Y +I+G R G ++ R+ +++ G
Sbjct: 270 MLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTG 329
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+D N ++ + + + +G+ ++RTYN
Sbjct: 330 LVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLR-NLRTYN 372
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 93/202 (46%), Gaps = 10/202 (4%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E F+ + + II+ L K G+ EA ++ E K + + V Y ++D C+
Sbjct: 3 EKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPD---VATYTIIVDRLCRAG 59
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D+ + ++ + S+++V A ++I+GLC+ A L+EEM KG EP
Sbjct: 60 KVDEADELFHKMIERGCSANTV-----AYNALINGLCKDENIERAYKLLEEMASKGYEPD 114
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM--VLW 281
Y I+ G R+G + + ++ + M S G D V N +L + +++ +
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174
Query: 282 LQKMKDSGIPFSVRTYNSVLNS 303
M D + + TYN++++
Sbjct: 175 TMDMADRKVAPDLITYNTLIDG 196
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/254 (23%), Positives = 111/254 (43%), Gaps = 44/254 (17%)
Query: 87 HPRLSSLA--FPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR 144
H R+ ++A LY +TE+ F + L +I L K + ++A +LE +SK+G+
Sbjct: 267 HCRVGNMARCLELYEEMTEKR-FSPDVLLCNAVIDMLCKAKKVDDAHK-VLEEMSKIGAV 324
Query: 145 ERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS------------------SSSVY 186
V+ Y L+D CK + D + + +V++ ++ V+
Sbjct: 325 PD--VVTYNILLDGLCKTNL---VDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVH 379
Query: 187 VKRQALKSMI---------------SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
R MI GLC+ G+ EA++L++ M + P G ++
Sbjct: 380 DARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLM 439
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+G R ++ R+ M GT D + N+VL+ +L++ +L+ + M S
Sbjct: 440 HGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGE 499
Query: 292 FS--VRTYNSVLNS 303
FS V TY +++N+
Sbjct: 500 FSPDVVTYTTLVNA 513
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 51/248 (20%), Positives = 97/248 (39%), Gaps = 13/248 (5%)
Query: 57 ASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A L K + S +A NAL + L D R L + + E +N
Sbjct: 64 ADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT--- 120
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
I++ L + G+ EA+ S+ S + V+ Y L+D+ K + +
Sbjct: 121 --ILSGLCRMGKVSEAKQFFDSMPSRGYSPD---VVAYNGLLDALYKEGK---VAEAWGL 172
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ + V ++I G C + + EA L +++ KG P Y I+ G
Sbjct: 173 FKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGL 232
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R +++ E + +M G + ++VLS + ++R + ++M + V
Sbjct: 233 ARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDV 292
Query: 295 RTYNSVLN 302
N+V++
Sbjct: 293 LLCNAVID 300
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 90/231 (38%), Gaps = 34/231 (14%)
Query: 109 WNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----H 162
++P +VA ++ L K+G+ EA L +T+ + ++ Y LID FC+
Sbjct: 146 YSPDVVAYNGLLDALYKEGKVAEAWGL-FKTMDMADRKVAPDLITYNTLIDGFCRVEKTD 204
Query: 163 DSKRGFDD-----------TYARLNQLVNSSSSVYVKRQALKSMI--------------- 196
++ + F D TY + + S++ + K M+
Sbjct: 205 EAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVL 264
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
SG C +G L EEM K P +I + ++D +++ +M G
Sbjct: 265 SGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAV 324
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
D V N++L N + + M D+G + +Y+ VLN C T
Sbjct: 325 PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKT 375
>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Glycine max]
Length = 777
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC +G+ +AE ++ ++ G+ PS Y ++ Y + G ++ QME G
Sbjct: 331 LLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERG 390
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + N V+S + + E+ W+++M + G+ +V TYNS++N
Sbjct: 391 LEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLING 439
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 5/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L++ C+ ++ A+L + + V + + +++ C+ G +A
Sbjct: 328 YCILLNGLCRVGRIEKAEEVLAKLVE-----NGVTPSKISYNILVNAYCQEGDVKKAILT 382
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E+M +GLEP+ + +I + G ++ E V +M G N +++ YG
Sbjct: 383 TEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQ 442
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
R +L +M +GI +V +Y S++N
Sbjct: 443 KGHFVRCFEFLDEMDKAGIKPNVISYGSLIN 473
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 73/171 (42%), Gaps = 7/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
L+ + K G + V+ Y +LI+ CK R D L ++ V +
Sbjct: 452 FLDEMDKAGIKPN--VISYGSLINCLCKD---RKLIDAEIVLADMI--GRGVSPNAEIYN 504
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I C + + +A +EM G++ + Y +I G GR G ++ E + QM
Sbjct: 505 MLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGK 564
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G D + N ++S Y + + KMK GI +V T++ ++ +C
Sbjct: 565 GCNPDVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYAC 615
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++IS CE G+ AE + M KG+ P+ Y +I GYG+ G ++
Sbjct: 395 RITFNTVISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLD 454
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-SCSTI 307
+M+ G + + + +++ +L + L M G+ + YN ++ SCS
Sbjct: 455 EMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCS-- 512
Query: 308 MSMLQD 313
+S L+D
Sbjct: 513 LSKLKD 518
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 48/93 (51%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L++ M G+ PS F Y ++ G ++ ++D ++ ++M +TV N ++ Y
Sbjct: 179 LMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYC 238
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + ++MK+ + ++ TYNS+LN
Sbjct: 239 KVGGIEEALGFKERMKEQNVECNLVTYNSLLNG 271
>gi|125600636|gb|EAZ40212.1| hypothetical protein OsJ_24656 [Oryza sativa Japonica Group]
Length = 661
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M +DG TV
Sbjct: 516 GRFKEAVDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 575
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ ++ LQ MK++G+ V TY +++ +
Sbjct: 576 NSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 616
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 85/192 (44%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L + EAE L LE ++ R R Y L+ + K S + +
Sbjct: 259 VTALISSLGSARRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVKIGSLKNAEQV 314
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 315 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 369
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M + G R D N+++ ++G +N L + +M++ GI
Sbjct: 370 AGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIE 429
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 430 PDVVTWNTLIDA 441
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 19/212 (8%)
Query: 149 VLFYCNLIDSFCK---HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
V+ + LID+ CK HD D N + +++ MI+ L E +
Sbjct: 432 VVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTT--------YNIMINLLGEEQRW 483
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG + + +
Sbjct: 484 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSPTMYHAL 543
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF 319
+++Y + ++ M+ G+ S NS++N+ + S+LQ + N
Sbjct: 544 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGL 603
Query: 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
++ T ++ + + V++ E V+ E M
Sbjct: 604 RPDVITYTTLM--KALIRVEQFEKVPVIYEEM 633
>gi|255685750|gb|ACU28364.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L ++++ V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G++G +++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTY 297
G D+ C N ++ ++ H +++ V ++M ++ G +V TY
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVNEAVALFKRMEEEEGCDQTVYTY 165
Score = 38.1 bits (87), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 52/102 (50%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++ +M +G + D V ++V
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVV 62
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ + + + + + + +G+ + Y+S+++ +
Sbjct: 63 VNGLCKNGRVEEALDYFKTCRFNGLAINSMFYSSLIDGLGKV 104
>gi|357491823|ref|XP_003616199.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355517534|gb|AES99157.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 872
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 42/216 (19%)
Query: 152 YCNLIDSFCKH-DSKRGFD-DTYARLNQL----VNSSSSVY------------------- 186
Y LID+FCK+ D K+ D +LNQ+ VN +S ++
Sbjct: 429 YSILIDAFCKNGDDKKVVDLREDMKLNQIKPSIVNHTSIIHRLCKSKTMPMQIVMNKFRA 488
Query: 187 -------VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ ++++ G C G A L+EEM PS F Y I G+ +L
Sbjct: 489 IGASGCKYDQTIYETLVDGFCREGDMVSAGKLLEEMGSNNFAPSAFCYCSQIKGFYKLRQ 548
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ ++ + M+ G R DT+ N +LS Y E + + ++ +D G+ + +YN
Sbjct: 549 FANALKVYSIMQKRGIRPDTIACNHILSIYCRKREFNEALALSEEFRDHGVSLNPYSYNE 608
Query: 300 VLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEV 335
+N L FP L+L V+ + V
Sbjct: 609 FINK----------LCRESFPEKALQLLPVMLKRNV 634
>gi|168062855|ref|XP_001783392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665090|gb|EDQ51786.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 540
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 14/199 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G AE L L + +LG R V+ Y LID + K + ++ + Q
Sbjct: 316 KAGFHSAAEEL-LAKMRQLGFRRN--VVAYSTLIDMYGKVGKLQEATRLFSTMKQQGCKG 372
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ + +M+ + G+ ++AE L+ E++ L P Y +I Y RLG E+
Sbjct: 373 NLI-----VYNTMLDMYGKAGRINDAERLMAELKDSKLVPDTVTYTTLINAYNRLGRFEE 427
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL- 301
R+ Q +DG ++D + ++++ YG + S++ L+ M SGI R +V+
Sbjct: 428 CIRVFEQHRADGLKLDRILVAIMINVYGKARQYSKLAELLEVMPKSGIQPDTRILKTVVE 487
Query: 302 -----NSCSTIMSMLQDLN 315
C +L+ +N
Sbjct: 488 IYEDGGMCENAAELLRKIN 506
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E L++EM K P Y +I G + + ++M+ G D V N+++
Sbjct: 44 EILVDEMIGKNCPPDIKFYALVIKEAINTGRFQTAQHWFSKMKLLGCPPDIVIYNILILE 103
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
YG S+ + + ++KD G+ TY +VL++C +
Sbjct: 104 YGKRGNFSQAMKYFSQLKDEGLLPDSGTYCAVLSACRKV 142
>gi|356533844|ref|XP_003535468.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g23020-like [Glycine max]
Length = 813
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 16/213 (7%)
Query: 119 AFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177
A +D G E TL E + +++ L VL + +I ++ G Y + Q
Sbjct: 452 ASIDAYG--EHGHTLEAEKVFIWSQKQKNLSVLEFNVMIKAY-------GIGKCYEKACQ 502
Query: 178 LVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
L +S V R + S+I L QPH A+ +++M+ GL Y +I +
Sbjct: 503 LFDSMEQHGVVADRCSYTSLIQILTTSDQPHMAKPYLKKMQEAGLVSDCIPYCVVICSFA 562
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+LG LE E I +M G + D + +++++ + D + + ++ +MK +G+P +
Sbjct: 563 KLGQLEMAEDIYWEMIRHGVQPDVIVYSILINVFSDAGRVKEAISYVDEMKKAGLPGNTV 622
Query: 296 TYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
YNS++ + + + +L +L+L+E
Sbjct: 623 IYNSLIK----LYAKIDNLEKAQEAYKLLQLSE 651
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I + GQ EA +M +G+ P+ + +I G G LE++ +V +ME
Sbjct: 278 TLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQLEEVSLLVRKMEEL 337
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+T N+++S Y H+++ + + MK++ + + +Y ++L + S
Sbjct: 338 RCSPNTRTYNILISLYAKHDDIGMATKYFEIMKEACLEPDLVSYRTLLYAYS 389
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%)
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I YG+ G L++ +M G TV N +++ G+H +L + L ++KM+
Sbjct: 276 YNTLIDTYGKAGQLKEASETFAKMLKQGVAPTTVTFNTMINICGNHGQLEEVSLLVRKME 335
Query: 287 DSGIPFSVRTYNSVLN 302
+ + RTYN +++
Sbjct: 336 ELRCSPNTRTYNILIS 351
>gi|341606819|gb|AEK83512.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 94/202 (46%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHXFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 63 GX---VEDAIRLLHRMIDEGFKPDVVTXSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAXTKHGKVDEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +++
Sbjct: 178 KRMEEEEGCDQTVYTYTILISG 199
>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
Length = 822
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC+ A+N++EEM K ++P F Y +I G+ R L D +I ME G
Sbjct: 455 LISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 514
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R D V N ++ Y +S +L + M+ G TY +V++
Sbjct: 515 VRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 563
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSK 165
P LV +I L K+G E+ +L LE R+R L V Y ++ID+ CK S
Sbjct: 272 PTLVTYGSLINCLGKKGDLEKIGSLFLEM------RKRGLSPNVQIYNSVIDALCKCWSA 325
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
L Q+ S + ++I+GLC G +AE+ + E + L P+
Sbjct: 326 ---TQAMVILKQMFASGCDPDII--TFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQL 380
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+G+ G L ++ +M G D V ++ ++S ++ +KM
Sbjct: 381 SYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKM 440
Query: 286 KDSGIPFSVRTYNSVLNS 303
+ + V YN +++
Sbjct: 441 TERQVFPDVNIYNVLISG 458
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+++ +D+ + N S+ V V+ GLC G+ E LIE G P
Sbjct: 187 DARKLYDEMLGEDSGADNYSTCVLVR---------GLCLEGRVEEGLKLIEARWGAGCIP 237
Query: 223 SGFEYKCIIYGYGRLGLLEDMER---IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
Y +I GY R G DM R ++ +ME+ G V +++ G +L ++
Sbjct: 238 HVVFYNVLIDGYCRRG---DMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIG 294
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M+ G+ +V+ YNSV+++ S Q +
Sbjct: 295 SLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 329
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G +A + E M KG+ P +I GY + G++ + ++ M
Sbjct: 489 TLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 548
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D V+S Y L+ + WL M +V TY+S++N C T
Sbjct: 549 GCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 602
>gi|115455503|ref|NP_001051352.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|14488357|gb|AAK63924.1|AC084282_5 unknown protein [Oryza sativa Japonica Group]
gi|108711214|gb|ABF99009.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113549823|dbj|BAF13266.1| Os03g0761300 [Oryza sativa Japonica Group]
gi|125545804|gb|EAY91943.1| hypothetical protein OsI_13630 [Oryza sativa Indica Group]
gi|125588003|gb|EAZ28667.1| hypothetical protein OsJ_12678 [Oryza sativa Japonica Group]
Length = 484
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 55/108 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++M +G +P+ + Y +++ YG +ED ME DG
Sbjct: 245 MVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGVEMRIEDAVATFLDMEKDG 304
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D V N ++S++ + L M+ GI + RT+N +LN
Sbjct: 305 IVPDIVVYNALVSAFCKAKKFENAFRVLNDMEGHGITTNSRTWNIILN 352
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ +L+ + CK + R + + ++N + + Y ++ G + +
Sbjct: 173 FNSLLGALCKSKNVRKAQEIFDKMNSRFSPDAKTY------SILLEGWGRAPNLPKMREV 226
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM G EP Y ++ + G +E+ R+V M S G + T ++++ +YG
Sbjct: 227 YSEMLDAGCEPDIVTYGIMVDSLCKTGRVEEAVRVVQDMTSRGCQPTTYIYSVLVHTYGV 286
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V M+ GI + YN+++++
Sbjct: 287 EMRIEDAVATFLDMEKDGIVPDIVVYNALVSA 318
>gi|449453081|ref|XP_004144287.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
gi|449489420|ref|XP_004158306.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Cucumis sativus]
Length = 720
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 57/114 (50%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G G EAE++I EM GL P Y ++ Y +G E ++ Q
Sbjct: 352 KAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANVGRWESARHLLKQ 411
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME+ + +T + +L+SY D E + L++MK+S + YN ++++
Sbjct: 412 MEARNVQPNTFIFSRILASYRDRGEWQKTFEVLREMKNSNVKPDRHFYNVMIDT 465
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + K ++IS L G+ EAE + EEM+ GL+P + ++ GY R G L+
Sbjct: 309 ASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMKEGGLKPRIKAFNALLKGYARKGSLK 368
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ E I+++ME G D +++ +Y +
Sbjct: 369 EAESIISEMEKSGLSPDEHTYGLLVDAYAN 398
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K + +TY R+ S + ++I + G A
Sbjct: 458 FYNVMIDTFGKFNCLDHAMETYDRM-----LSEGIEPDVVTWNTLIDCHRKHGYHDRAAE 512
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EEM+ +G P Y +I G ++++ ++ +M+S G + V ++ YG
Sbjct: 513 LFEEMQERGYLPCPTTYNIMINSLGEQEKWDEVKILLGKMQSQGLLPNVVTYTTLVDIYG 572
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L+ MK +G+ S YN+++N+
Sbjct: 573 HSGRFNDAIDCLEAMKSAGLKPSATMYNALINA 605
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A + +E M+ GL+PS Y +I + + GL E M SDG R +
Sbjct: 575 GRFNDAIDCLEAMKSAGLKPSATMYNALINAFAQRGLSEQAVNAYRVMISDGLRPSLLAL 634
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ LQ MK++ + V TY +++ +
Sbjct: 635 NSLINAFGEDRRDIEAFSILQYMKENDVKPDVVTYTTLMKA 675
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L +I G + G P+ A + ++ GL P + +I G G E+ E I +M+
Sbjct: 284 LNDIILGFAKAGDPNRALYFLSMVQASGLNPKTSTFVAVISALGNHGRTEEAEAIFEEMK 343
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G + N +L Y L + +M+ SG+ TY ++++ + +
Sbjct: 344 EGGLKPRIKAFNALLKGYARKGSLKEAESIISEMEKSGLSPDEHTYGLLVDAYANV 399
>gi|255569680|ref|XP_002525805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534892|gb|EEF36579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 182
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 78/163 (47%), Gaps = 5/163 (3%)
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
S + Y L+D FC ++ D A +++ +++ + A ++ G+C+
Sbjct: 19 SGHSPTTVIYITLLDGFC---NQGHLDMALALFHEM--QKNTLKLDCVAYNIIVDGMCKA 73
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A+ L + ++GL+P Y +I + G LE+ ++ +ME G+ D
Sbjct: 74 GKLNDAKELFSTLPIEGLQPDVRTYNILIKVFCNEGSLEEAYQVFREMEEGGSLPDGCSY 133
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
N+++ + HN+LS + +M D G V T + V +S S
Sbjct: 134 NVIIQGFLRHNDLSGATQLIHEMIDKGFSADVTTPSLVADSVS 176
>gi|414887392|tpg|DAA63406.1| TPA: hypothetical protein ZEAMMB73_124662 [Zea mays]
Length = 795
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+N S++ Y S++ +G + E+++ E++ G+ P + Y +IY YGR G
Sbjct: 636 INHSAATY------NSLMHMYSRLGDCEKCESILTEIKSSGMRPDRYSYNTVIYAYGRKG 689
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ R+ ++M+ G + D V N+ + SY + + ++ + G + RT+N
Sbjct: 690 QMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANIMFEEAIDLVRYLVTQGCRPNERTFN 749
Query: 299 SVLNSCSTIMSMLQ 312
S+L S M++
Sbjct: 750 SILQGYSRHGRMVE 763
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 86/196 (43%), Gaps = 15/196 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-F 168
+P+++ I + G EA ++ + S Y L+ +F S+ G F
Sbjct: 152 HPRVLPTAIRVFARAGCLAEASAILEAAPAPDASA-------YTALVSAF----SRAGRF 200
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEY 227
D A ++V+ V + +M P E L++ M+ G+E + Y
Sbjct: 201 RDAVAVFQRMVDGG--VQPALVTYNVVFHAYSKMSVPWKEVVALVDSMKEDGIERDRYTY 258
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I R GL + ++ ++M++ G D V N +L YG + + L++M++
Sbjct: 259 NTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLKRMEN 318
Query: 288 SGIPFSVRTYNSVLNS 303
+G SV TYNS++++
Sbjct: 319 AGCTPSVVTYNSLISA 334
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ ++G EA + E K E + V F +L+D + K R ++ L
Sbjct: 261 LISCCRRRGLHREAAQVFDEM--KAAGFEPDKVTF-NSLLDVYGK---ARKHEEAIGVLK 314
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ N+ + V S+IS + G EA L +EM +G++P Y +I G R
Sbjct: 315 RMENAGCTPSV--VTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDR 372
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G ++ ++M +G + N ++ +G + + M+ ++ +G V T
Sbjct: 373 VGKIDAALATYSEMVRNGCSPNLCTYNALIKLHGVRGKFTEMMAVFDDLRSAGYVPDVVT 432
Query: 297 YNSVLN 302
+N++L+
Sbjct: 433 WNTLLS 438
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++IS G EA + +EM+ G EP + ++ YG+ E+ ++
Sbjct: 255 RYTYNTLISCCRRRGLHREAAQVFDEMKAAGFEPDKVTFNSLLDVYGKARKHEEAIGVLK 314
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ME+ G V N ++S+Y L + Q+M+ G+ V TY ++++
Sbjct: 315 RMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLIS 368
>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
Length = 455
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A +++ EMR + G+ P+ + Y +I G+ ++G +++ ++ ++M +
Sbjct: 77 TVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLT 136
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V N ++ Y D +L +L+ +M + G+ +V TYN ++++
Sbjct: 137 KGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHA 188
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 14/193 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+GQ +E + L E + + G R +LVL Y LI+S H + D + +
Sbjct: 255 LIYALSKKGQVQETDKLFDEAVRR-GIRP-DLVL-YNALINS---HSTSGNIDRAFEIMG 308
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +++ GLC +G+ EA LI+EM +G++P Y +I GY
Sbjct: 309 EM--EKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYSM 366
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G ++D RI N+M + G + N ++ G ++ MV ++M ++GI
Sbjct: 367 KGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV---KEMVENGITPD 423
Query: 294 VRTYNSVLNSCST 306
TY S++ +T
Sbjct: 424 DSTYISLIEGLTT 436
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 87/213 (40%), Gaps = 7/213 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A + + E N +I+ K G+ +EA + E L+K G + E V+ Y
Sbjct: 91 ALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTK-GEVKPEAVM-YN 148
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LI +C D +++V ++ V L ++ L G+ EA L+E
Sbjct: 149 ALIGGYCDQGK---LDTALLYRDRMVERGVAMTVATYNL--LVHALFMDGRGTEAYELVE 203
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM KGL P F Y +I G+ + G ++ I M G R V ++ +
Sbjct: 204 EMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKG 263
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++ + GI + YN+++NS ST
Sbjct: 264 QVQETDKLFDEAVRRGIRPDLVLYNALINSHST 296
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 104/258 (40%), Gaps = 50/258 (19%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ Q N + +I L K GQ A L+ E + K+G R Y L+ +H
Sbjct: 379 AGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMI-KVGHRPDTFT--YHPLMQGHFQHYD 435
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
K D + LN++ NS + MI+GLC+ G+ EA NL+EEM +GL+P+
Sbjct: 436 K---DGAFELLNEMRNSG--ILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNA 490
Query: 225 FEYKCIIYGYGR-----------------------------------LGLLEDMERIVNQ 249
F Y +I G+ + +G +E+ E Q
Sbjct: 491 FMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQ 550
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NS 303
++ G D + ++ Y L + LQ+M +SG+ + TY +L N
Sbjct: 551 VQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSND 610
Query: 304 CSTIMSMLQD-LNSNDFP 320
+ S+LQ L S D P
Sbjct: 611 HEKVSSILQSMLGSGDKP 628
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISGLC+M +A L++EM +GLEP Y +I G+ R G + + + + +
Sbjct: 670 SLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAK 729
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + V ++ + +++ + M D GI YN + CS + Q
Sbjct: 730 GLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQA 789
Query: 314 L 314
L
Sbjct: 790 L 790
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L++ CK + + A L+++ S S + +++ G + G+ EA ++
Sbjct: 318 YGALMNGLCKGGRLK---EAKALLDEM--SCSGLKPNVVVYATLVDGFMKEGKAAEAFDI 372
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM G++P+ Y +I G ++G L +++N+M G R DT + ++ +
Sbjct: 373 LNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQ 432
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H + L +M++SGI + TY ++N
Sbjct: 433 HYDKDGAFELLNEMRNSGILPNAYTYGIMING 464
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GL +G+ EAE +++ +GL P F Y +I+GY + LE ++++ QM +
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNS 589
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + + +L Y N+ ++ LQ M SG Y V+ + S
Sbjct: 590 GLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLS-------- 641
Query: 314 LNSNDFPLSILELTEV 329
S + ++ + LTEV
Sbjct: 642 -RSENMEVAFMVLTEV 656
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK R FD ++ ++ MISGLC G EA
Sbjct: 245 VYTYSTFLEAHCK---ARDFDAAKKVFEEMRRRDCAM--NEVTYNVMISGLCRSGAVEEA 299
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
EEM GL P F Y ++ G + G L++ + ++++M G + + V ++
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDG 359
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ + + L +M +G+ + Y++++ I
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKI 398
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G A N+ + + KGL P+ Y +I G + G + D + M
Sbjct: 705 ALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDR 764
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
G D N++ + D +L + + ++M + G
Sbjct: 765 GIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRG 800
>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
Length = 585
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC + +A L +E+ G PS Y II G ++G + +++ +ME
Sbjct: 146 TLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEK 205
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V N V+ S + + + +M D GIP +V TY+S+L+
Sbjct: 206 GCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHG 255
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 72 IALNALSHLLSPDTTHPRLSSLA--FPLYMRITEESWFQWNPKL-----VAEIIAFLDKQ 124
I +N L H + D H S+L F L ++ T ++ L + + + D+
Sbjct: 109 ILINCLCHS-NRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEI 167
Query: 125 GQREEAETLILET-----LSKLGSREREL--------------VLFYCNLIDSFCKHDSK 165
G+ A +LI T L K+G L V+ Y +IDS CK +
Sbjct: 168 GKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCK--DR 225
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
R + Y +++V+ V + S++ G C +GQ +EA +L ++M + + P+
Sbjct: 226 RANEAMYF-FSEMVDQGIPPNVVTYS--SILHGFCNLGQLNEATSLFKQMIGRNVMPNTV 282
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ ++ G + G++ + R+ M +G D + ++ Y +++ M
Sbjct: 283 TFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIM 342
Query: 286 KDSGIPFSVRTYNSVLNS 303
G SVR YN ++N
Sbjct: 343 VGKGFAPSVRVYNILING 360
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 16/167 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D CKH D+ + L + S ++ + +I G+C G+ A L
Sbjct: 424 YSILLDGLCKHGH---LDEAFRLLKAMQESKIEPHICIYNI--LIQGMCNFGKLEAAREL 478
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ VKG++PS Y +I G + GL + + +M +G ++ N+ + +
Sbjct: 479 FSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLR 538
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
+ + S V +++M G FS S+ ML DL SND
Sbjct: 539 NGDPSNAVRLIEEMVGRG--FSAD---------SSTFQMLLDLESND 574
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G C+ G+P A+ L +EM GL P Y ++ G + G L++ R++ M+
Sbjct: 391 TLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQES 450
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+++ + +L + GI SV TY +++
Sbjct: 451 KIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISG 500
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC++G+ EA+ L EEM+ +G+ P Y +I+G+ G + + + ++M G
Sbjct: 243 IIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQG 302
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ D V ++++ + +++ L+ M GI ++ TYNS+++ M+ DL
Sbjct: 303 VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDG----FCMVGDL 358
Query: 315 NS 316
NS
Sbjct: 359 NS 360
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 77/160 (48%), Gaps = 12/160 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +D CK+D + N+L S + + + +I GLC+ G+ A L
Sbjct: 450 YGIFLDGLCKNDC---LFEAMELFNEL--KSYNFKLNIENYSCLIDGLCKAGKLETAWEL 504
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E++ +GL+P Y +I+G+ ++G +++ + +ME +G D + N +L + +
Sbjct: 505 FEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCE 564
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
N+L ++ L KM + + N+ SC+ ++ ML
Sbjct: 565 GNKLEEVIKLLHKMVQKDV-----SPNAA--SCTIVVDML 597
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 80/185 (43%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K G+ +EA+ L E + G V+ Y LI FC +D + +
Sbjct: 243 IIDGLCKVGREDEAKEL-FEEMKAQGMIPD--VISYSTLIHGFC---CAGKWDQSKHLFD 296
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V+ V +I LC+ G+ EA+ L+E M +G+ P+ Y +I G+
Sbjct: 297 EMVDQG--VQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCM 354
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G L + M S G D + +++ Y ++ + +M G +V T
Sbjct: 355 VGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTT 414
Query: 297 YNSVL 301
Y ++L
Sbjct: 415 YGTLL 419
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V + V Q + GLC+ EA L E++ + + Y C+I G + G
Sbjct: 437 VMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAG 496
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
LE + ++ +G + D V N+++ + ++ + +KM+++G + YN
Sbjct: 497 KLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYN 556
Query: 299 SVL 301
++L
Sbjct: 557 TLL 559
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
A ++I G C+ G+ ++A L+EEM+VKG P+ Y +I G ++ L++ + +
Sbjct: 370 HAYNAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEE 429
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S+G +++ V + ++ +G + L ++++ G+ +V T+N +L++
Sbjct: 430 AKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 483
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 54/259 (20%), Positives = 113/259 (43%), Gaps = 22/259 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + +I L K G+ ++A +L E + G +V Y +LI SF K K +
Sbjct: 228 NAVTFSSLIDGLGKCGRVDDAYSL-YEKMLDCGHVPGAIV--YTSLIRSFFKCGRK---E 281
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D + ++V++ S + + + + + + G+ + L E+ G P Y
Sbjct: 282 DGHKIYKEMVHTGCSPDL--TLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSI 339
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+G + GL + + M+ G +DT N V+ + ++++ L++MK G
Sbjct: 340 LIHGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVKG 399
Query: 290 IPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EEEV 335
P +V TY SV++ + I + ++ SN L+++ + +++ +E
Sbjct: 400 HPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAY 459
Query: 336 SVVKELEDSSVLDEAMKWD 354
+++EL + W+
Sbjct: 460 LIMEELMQKGLTPNVYTWN 478
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +ID FCK + Y L ++ V V S+I GL ++ + EA
Sbjct: 372 YNAVIDGFCKSGK---VNKAYQLLEEMKVKGHPPTVV---TYGSVIDGLAKIDRLDEAYM 425
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EE + G++ + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 426 LFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALV 485
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ ++ Q MKD P + TY+ ++N
Sbjct: 486 KAEEINEALICFQSMKDLKCPPNQITYSILING 518
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ + EA L E++ P + Y +I GYG G ++ ++ + ++ G+
Sbjct: 65 LCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPS 124
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ N +L+ G + + ++MK +P +V TYN +++
Sbjct: 125 VIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTYNILID 167
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI G G+ EA L+E + KG PS Y CI+ G+ +E+ RI +M
Sbjct: 92 AYNTMIMGYGSAGKFDEAYGLLERQKAKGSIPSVIAYNCILTCLGKKRRVEEALRIFEEM 151
Query: 251 ESDGT 255
+ D
Sbjct: 152 KRDAV 156
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 104/245 (42%), Gaps = 45/245 (18%)
Query: 108 QWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+W P +V+ +I L + G+ E A ++ E +K G + + Y L+D K
Sbjct: 39 KWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAK-GCKPN--LWTYNTLVDCLGKAGQ- 94
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD+ L ++ ++ V+ +IS L + G+ EA L EMR +G P F
Sbjct: 95 --FDEALRLLAEMRDNGCVPDVR--TYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTF 150
Query: 226 EYKCIIYGYGRLG-------LLEDMER----------------------------IVNQM 250
Y +IYG G++G LLE+MER + +M
Sbjct: 151 TYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEM 210
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ G + D++ ++ + G + + L +MK+ G+ V TYN+++ + +
Sbjct: 211 KRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDL 270
Query: 311 LQDLN 315
++ N
Sbjct: 271 VEAYN 275
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 105/228 (46%), Gaps = 18/228 (7%)
Query: 80 LLSPDTTHPRLSSLAFPLYMRITEESW----FQWNPKLVAEIIAFLDKQGQREEAETLIL 135
L+S RLS AF L+ + E F +N +I L K G+ ++A L L
Sbjct: 120 LISTLGKAGRLSE-AFTLFAEMRERGCVPDTFTYN-----SLIYGLGKVGRSQKAMEL-L 172
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195
E + + G V+ Y +LI K + + + S+ ++
Sbjct: 173 EEMERHGCPPD--VMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSI-----TFTAL 225
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ L + G+ +A L++EM+ +G++P Y +I G+G++G L + ++++M+ +G
Sbjct: 226 MDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGC 285
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V + +++ ++L L+KM+ G P TYN+++N
Sbjct: 286 KPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLING 333
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ L + GQ EA+ L EE++ P Y C+I GR G E +V +M++
Sbjct: 14 SLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAK 73
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + N ++ G + + L +M+D+G VRTYN ++++
Sbjct: 74 GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIST 123
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 59/110 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G ++G EA NL++EM+ G +P Y C+I G + L++ +++ +ME +
Sbjct: 259 ALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKE 318
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G DT+ N +++ G L+ +MK G V TY++++ +
Sbjct: 319 GCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA 368
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL + Q EA ++++M +G P Y +I G G+ GLL D R+ ++M+S G
Sbjct: 295 LITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG 354
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V + ++++ G + + ++M+ GI + TY S++
Sbjct: 355 CNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSII 401
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+ L + + A L EEM G++P F Y II G+ G ++D +R+ ++M
Sbjct: 364 TLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGK 423
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D + N L+S G + MK+SG+ V TY+++L
Sbjct: 424 GLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALL 471
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 57/113 (50%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GL + G ++A L + M+ KG P Y +I G+ +E + +MES
Sbjct: 329 TLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESV 388
Query: 254 GTRVD--TVCSNM-VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D T CS + VL G ++ R+ +M+ G+ V TYN+ LNS
Sbjct: 389 GIQPDLFTYCSIITVLGKAGQVDDADRL---FSEMRGKGLSPDVITYNAFLNS 438
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + GQ +A+ L EMR KGL P Y + GR G ++ +I M+
Sbjct: 399 SIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKES 458
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D + +L E+ L+++ + G F ++ L
Sbjct: 459 GLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECL 506
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G EA+ L++E +++ G + + Y LID CK +
Sbjct: 371 LINGLCKVGDLREAKKLVIE-MTQRGLKPDKFT--YTMLIDGCCKEGD---LESALEIRK 424
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + + A ++ISG C GQ EAE + EM G++P Y +I+G+ +
Sbjct: 425 EMV--KEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCK 482
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ +++ +M+ DG V N++L+ ++ + L M + G+ T
Sbjct: 483 KGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDIT 542
Query: 297 YNSVL 301
YN +L
Sbjct: 543 YNILL 547
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFC-KHDSKRGFDDTY 172
+I L K+GQ ++A L LE +R LV + + LI+ C + G +
Sbjct: 301 LINGLCKEGQLDDANKLFLEMC------DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQ 354
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
L + V Y ++I+GLC++G EA+ L+ EM +GL+P F Y +I
Sbjct: 355 QMLRKGVKPDVITY------NTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLID 408
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G LE I +M +G +D V ++S + ++ L++M ++GI
Sbjct: 409 GCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKP 468
Query: 293 SVRTYNSVLNS 303
TY V++
Sbjct: 469 DDATYTMVIHG 479
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 73/286 (25%), Positives = 116/286 (40%), Gaps = 33/286 (11%)
Query: 31 LTARLTKQGQRFLSSLALAVT-----RDSKAASRLISKFVASSPQFIALNALSHLLSPDT 85
L AR T Q S L A T D+ RL+ K P L+ +
Sbjct: 146 LEARGTHQSNLVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNL 205
Query: 86 THPRLSSLAFPLYMRITEESWFQWNPKLVAE---IIAFLDKQGQREEAETLILETLSKLG 142
T P A+ Y I + + P V + ++ L K+ + EA+ L E +G
Sbjct: 206 TSP-----AWAFYEEILDCGY----PPDVCKFNVLMHRLCKEHKINEAQLLFGE----IG 252
Query: 143 SRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
R R V+ + LI+ +CK G D RL + + + V+ +I+GLC+
Sbjct: 253 KRGLRPTVVSFNTLINGYCK----SGNLDQGFRLKRFM-MENRVFPDVFTYSVLINGLCK 307
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
GQ +A L EM +GL P+ + +I G+ G + I QM G + D +
Sbjct: 308 EGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVIT 367
Query: 262 SNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
N + L GD E ++V+ +M G+ TY +++ C
Sbjct: 368 YNTLINGLCKVGDLREAKKLVI---EMTQRGLKPDKFTYTMLIDGC 410
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + NLI+ +C + FDD N+++ SS + Q +I+ L + + EA
Sbjct: 392 VVTFTNLINGYCMAEK---FDDALRMKNKMM--SSKCKLDLQVFGKLINSLIKKDRLKEA 446
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L+ E+ GL P+ Y II GY + G ++ ++ ME DG + + N ++
Sbjct: 447 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L KM+ GI +V TY ++L
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ + E++ + + A + L K G+ EEA + I+ L ++Y
Sbjct: 551 AFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK------VYYT 603
Query: 154 NLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LID F SK G D A L ++++ + ++ LC+ + +EA ++
Sbjct: 604 TLIDGF----SKAGNTDFAATLIERMIDEGCTP--DSYTYSVLLHALCKQKRLNEALPIL 657
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M ++G++ + F Y +I R G + +R+ N+M S G + + ++SY
Sbjct: 658 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 717
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L + KM+ G+ V TYN +++ C
Sbjct: 718 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +ISGLC+ G+ +A L + M G+ PS Y +I GY +LG + D +I
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME +G D N ++ D L +K+ P +V T+ +++N
Sbjct: 349 MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTP-TVVTFTNLING 401
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE L+ +G P+ + +I GY +D R+ N+M S
Sbjct: 363 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++D +++S + L L ++ +G+ +V TY S+++
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471
>gi|356541205|ref|XP_003539071.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g01570-like [Glycine max]
Length = 768
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ LC +G+ +A + EE+ +P F Y +I + +ED RI NQM+S+
Sbjct: 255 SLITALCRLGKVDDAITVYEELNGSAHQPDRFTYTNLIQACSKTYRMEDAIRIFNQMQSN 314
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R DT+ N +L + ++ +KM G+ S TYN +++
Sbjct: 315 GFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHG 364
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++S + G EA ++ EM K Y II G G++G + +++++
Sbjct: 602 SIMSSFVKKGYFAEAWAILTEMGEKFCPTDIATYNMIIQGLGKMGRADLASAVLDRLLRQ 661
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D V N ++++ G + + + ++M+ SGI V TYN+++
Sbjct: 662 GGYLDIVMYNTLINALGKASRIDEVNKLFEQMRSSGINPDVVTYNTLI 709
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ ++A T + E L+ GS + Y NLI + K +D N
Sbjct: 256 LITALCRLGKVDDAIT-VYEELN--GSAHQPDRFTYTNLIQACSK---TYRMEDAIRIFN 309
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+ S+ A S++ G + + EA L E+M +G+ PS + Y +I+G R
Sbjct: 310 QM--QSNGFRPDTLAYNSLLDGHFKATKVMEACQLFEKMVQEGVRPSCWTYNILIHGLFR 367
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G E + ++ G VD + ++V+ +L + +++M+ G + T
Sbjct: 368 NGRAEAAYTMFCDLKKKGQFVDGITYSIVVLQLCKEGQLEEALQLVEEMESRGFVVDLVT 427
Query: 297 YNSVLNS 303
S+L S
Sbjct: 428 ITSLLIS 434
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 107/251 (42%), Gaps = 14/251 (5%)
Query: 53 DSKAASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWN 110
D A L+ K P I N + H L + +L S A L+ + E +
Sbjct: 164 DLDGAVELVRKMTERGYRPNAITYNNIMHGLC---SGRKLDS-ALQLFKEMEESGSCPPD 219
Query: 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170
+ I+ L K G+ ++A L+ +SK S V+ Y +L+ CK D+
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPN---VVTYSSLLHGLCKAGK---LDE 273
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
A L ++ S S + ++I G C++G+ EA +L+EEM G +P+ Y +
Sbjct: 274 ATALLQRMTRSGCSPNI--VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVL 331
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ + + G ED +V M G + N +L + +E+ R L M G
Sbjct: 332 LDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGC 391
Query: 291 PFSVRTYNSVL 301
+V +YN+V+
Sbjct: 392 VPNVVSYNTVI 402
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC++ Q EA ++++M +G +P+ Y ++ G+ R+G L+ +V +M
Sbjct: 119 TVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTER 178
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
G R + + N ++ +L + ++M++SG P V TY+++++S
Sbjct: 179 GYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDS 229
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 15/174 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y ++DS K DD + +V+ S V + S++ GLC+ G+ EA
Sbjct: 220 VFTYSTIVDSLVKSGK---VDDACRLVEAMVSKGCSPNVVTYS--SLLHGLCKAGKLDEA 274
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++ M G P+ Y II G+ +LG +++ ++ +M G + + V ++L +
Sbjct: 275 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 334
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN----------SCSTIMSMLQ 312
+ + + ++ M + G ++ TYNS+L+ +C + SM+Q
Sbjct: 335 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQ 388
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +EA T +L+ +++ G ++ Y +ID CK D+ Y L ++V+
Sbjct: 265 LCKAGKLDEA-TALLQRMTRSGCSPN--IVTYNTIIDGHCKLGR---IDEAYHLLEEMVD 318
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V + ++ C+ G+ +A L+E M KG P+ F Y ++ + + +
Sbjct: 319 GGCQPNVVTYTV--LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEV 376
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E ++++ M G + V N V++ ++ VL L++M + + T+N++
Sbjct: 377 ERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTI 436
Query: 301 LNS-CST 306
+++ C T
Sbjct: 437 IDAMCKT 443
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
KS++ GLC+ GQ +A EM K P Y +I G + L+D R++ +M
Sbjct: 14 KSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 72
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G + N VL + N + + L++M G P V +Y +V+N
Sbjct: 73 NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVING 123
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI+GL + + +A L+EEM G P+ F Y +++G+ + +E+ ++ QM
Sbjct: 49 TMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVMR 108
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V V++ +++ + KM G +V TY ++++
Sbjct: 109 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 158
>gi|242038757|ref|XP_002466773.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
gi|241920627|gb|EER93771.1| hypothetical protein SORBIDRAFT_01g013990 [Sorghum bicolor]
Length = 487
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++M +G +P+ F Y +++ YG +ED ME DG
Sbjct: 248 MVDALCKTGRVEEAVCVVQDMSSRGCQPTTFIYSVLVHTYGVDMRIEDAVATFLDMEKDG 307
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
D V N +++++ + + M+ GI + RT+N +LN T++S+ +D
Sbjct: 308 IVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGISPNSRTWNIILN---TLISLGKD 363
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 22/246 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +E +T + + + K G + + Y +L+D +C + + Q
Sbjct: 307 KDGKMKEGKT-VFDMMMKQGIKPNFVT--YNSLMDGYCLVKEVNKAKSIFNTMAQ----- 358
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ MI+G C++ + EA NL +EM K + P Y +I G + G +
Sbjct: 359 GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISY 418
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++V+QM G + N +L + +++ + + L K KD G + TY+ ++
Sbjct: 419 ALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIK 478
Query: 303 S-CST-----IMSMLQDLNSNDFPLSILELT--------EVLNEEEVSVVKELEDSSVLD 348
C + + +DL + L + T E L E ++++ ++ED+ +
Sbjct: 479 GLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538
Query: 349 EAMKWD 354
+A ++
Sbjct: 539 DAKTYE 544
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 23/221 (10%)
Query: 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAF------LDKQGQREEAETLILETLSKLGS 143
L AF ++ +I + + V + I F L +GQ ++A L + + LG
Sbjct: 135 LIPFAFSVFAKILKMGY-------VPDTITFTTLSKGLCLKGQIQQA-FLFHDKVVALGF 186
Query: 144 RERELVLFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEM 202
++ Y LI CK R D R++ LV + +Y ++I +C++
Sbjct: 187 HFDQIS--YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY------NTIIDSMCKV 238
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
+EA +L EM KG+ P Y +I G+ LG L+D + N+M + + D
Sbjct: 239 KLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTF 298
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++++++ ++ M GI + TYNS+++
Sbjct: 299 NILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 50/108 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ Q +A L+ + + KG +P Y +I G + G LED ++ +
Sbjct: 440 SILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVK 499
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D +++ + + + L KM+D+G +TY ++
Sbjct: 500 GYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547
>gi|242046162|ref|XP_002460952.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
gi|241924329|gb|EER97473.1| hypothetical protein SORBIDRAFT_02g038080 [Sorghum bicolor]
Length = 796
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 6/123 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+N S++ Y S++ +G + E ++ E++ G+ P + Y +IY YGR G
Sbjct: 637 INHSAATY------NSLMHMYSRLGDCEKCEAILTEIKSSGMRPDRYSYNTVIYAYGRKG 690
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ R+ ++M+ G + D V N+ + SY + + ++ + G + RTYN
Sbjct: 691 QMKEASRLFSEMKCSGVKPDIVTYNIFIKSYVANLMFEEAIDLVRYLVAQGCKPNERTYN 750
Query: 299 SVL 301
S+L
Sbjct: 751 SIL 753
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L +M+S + + E ++ M+ + S Y +++ Y RLG E E I+ +++
Sbjct: 609 LNAMVSIYGKNKMVKKVEEVLTLMKENSINHSAATYNSLMHMYSRLGDCEKCEAILTEIK 668
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S G R D N V+ +YG ++ +MK SG+ + TYN + S
Sbjct: 669 SSGMRPDRYSYNTVIYAYGRKGQMKEASRLFSEMKCSGVKPDIVTYNIFIKS 720
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L++ M+ G+E + Y +I R GL + ++ ++M++ G D V N +L YG
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+KM+++G SV TYNS++++
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNSLISA 335
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 84/185 (45%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ ++G EA + E K E + V F +L+D + K R ++ L
Sbjct: 262 LISCCRRRGLYREAAQMFDEM--KAAGFEPDKVTF-NSLLDVYGK---ARRHEEAIGVLK 315
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ N+ + V S+IS + G EA L +EM +G++P Y +I G R
Sbjct: 316 KMENAGCTPSV--VTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDR 373
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G ++ ++M +G + N ++ +G + + M++ ++ +G V T
Sbjct: 374 IGKIDAALATYSEMVRNGCSPNLCTYNALIKMHGVRGKFTEMMIVFDDLRSAGYVPDVVT 433
Query: 297 YNSVL 301
+N++L
Sbjct: 434 WNTLL 438
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++IS G EA + +EM+ G EP + ++ YG+ E+ ++
Sbjct: 256 RYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYGKARRHEEAIGVLK 315
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ME+ G V N ++S+Y L + Q+M+ G+ V TY ++++ I
Sbjct: 316 KMENAGCTPSVVTYNSLISAYVKDGLLEEALELKQEMEFRGMKPDVVTYTTLISGLDRI 374
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/149 (20%), Positives = 61/149 (40%), Gaps = 15/149 (10%)
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN-ELSRMVL 280
P Y ++ + R G D + +M G + V N+VL Y + +V+
Sbjct: 183 PDASAYTALVSEFSRAGRFRDAVAVFRRMVDGGVQPALVTYNVVLHVYSKMSVPWKEVVV 242
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSC------STIMSMLQDLNSNDFPLSILELTEVLN--- 331
+ MK+ GI TYN++++ C M ++ + F + +L+
Sbjct: 243 LVDSMKEDGIELDRYTYNTLISCCRRRGLYREAAQMFDEMKAAGFEPDKVTFNSLLDVYG 302
Query: 332 -----EEEVSVVKELEDSSVLDEAMKWDS 355
EE + V+K++E++ + ++S
Sbjct: 303 KARRHEEAIGVLKKMENAGCTPSVVTYNS 331
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ LC+ G EA +L+E M GL P Y II G+ + G L + N+M S G
Sbjct: 501 FVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
V +++ ++ L ++ KM + +P +V TYN+++N C T
Sbjct: 561 VAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMT 613
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 49/111 (44%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I GLC G A L +EM +GL P F Y ++ G +LG + N+M S
Sbjct: 394 NTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLS 453
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N + + S ++M +G P V TYN +++
Sbjct: 454 KGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++DS+CK D L+++ Y +++GL + G+ +A
Sbjct: 215 VVTYNTMLDSYCKEGR---VDQALELLSEM--QERGCYPNDVTYNVLVNGLSKKGELEQA 269
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ LIEEM GL S + Y +I G+ + GL + +V +M
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEM 311
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 51/97 (52%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A+N+ M G++P+ Y ++ Y + G ++ ++++M+ G + V N+++
Sbjct: 198 KAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLV 257
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ EL + +++M +SG+ S TYN ++N
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLING 294
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II K G +A + E LSK + V+ Y LI + H +K+ D + +
Sbjct: 536 IINGFVKNGHLRKAREVFNEMLSKGVAPS---VVTYTVLIHA---HAAKQMLDLAFMYFS 589
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ S V ++I+GLC + EA +EM KG+ P+ F Y +I
Sbjct: 590 KMLEKSVPANVI--TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+G E+ R+ +M + D+ ++ L +
Sbjct: 648 MGYWEEALRLYREMLDRKIQPDSFTHSVFLKN 679
>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ + AE L E + + G R + + LID C+ R D +
Sbjct: 299 LIHGLCKEGRLDVAEQLFDE-MQQRGLRPNGIT--FTALIDGQCR---SRRIDSAMNTYH 352
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q++ + V ++++GLC++G ++A L++EMR+ G++P Y +I GY +
Sbjct: 353 QML--TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCK 410
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE I M +G +D V ++S + + L++M ++G+ T
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDAT 470
Query: 297 YNSVLNS 303
Y V++
Sbjct: 471 YTMVIDG 477
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G +A L+ E + +G + ++ Y LID +CK + +N+
Sbjct: 373 LCKVGDVNKARKLVDE-MRMVGMKPDKIT--YTTLIDGYCKEGDLESAMEIRKGMNE--- 426
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V + A ++ISG C G+ +AE + EM G++P Y +I GY + G +
Sbjct: 427 --EGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNV 484
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ +++ +M+ +G + + N++++ ++ + L+ M + G+ TYN +
Sbjct: 485 KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNIL 544
Query: 301 L 301
L
Sbjct: 545 L 545
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPH 206
++ Y L++ CK D AR +LV+ V +K + ++I G C+ G
Sbjct: 363 LVMYNTLLNGLCKVG-----DVNKAR--KLVDEMRMVGMKPDKITYTTLIDGYCKEGDLE 415
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A + + M +G+ + +I G+ R G + D ER + +M G + D MV+
Sbjct: 416 SAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + L++M+ +G V TYN ++N
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V +Y LI+ FCK S R + + + ++V + ++I+GLC+ E
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTV-----SFNTLINGLCKSRNLDEG 277
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M + P F Y +I+G + G L+ E++ ++M+ G R + + ++
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M G+ + YN++LN
Sbjct: 338 QCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
+ EE N A I F + G+ +AE + E + + G + + Y +ID +C
Sbjct: 424 MNEEGVVLDNVAFTALISGFC-RDGRVRDAERTLRE-MVEAGMKPDDAT--YTMVIDGYC 479
Query: 161 KHDS-KRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
K + K GF L ++ +N + L ++GLC+ GQ A L+E M
Sbjct: 480 KKGNVKMGF----KLLKEMQINGHKPGVITYNVL---MNGLCKQGQMKNANMLLEAMLNL 532
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
G+ P Y ++ G+ + G ED+ ++ N+ G VD ++S Y
Sbjct: 533 GVTPDDITYNILLEGHCKNGKAEDLLKLRNE---KGLIVDYAYYTSLVSEY 580
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + NLI+ +C + FDD N+++ SS + Q +I+ L + + EA
Sbjct: 392 VVTFTNLINGYCMAEK---FDDALRMKNKMM--SSKCKLDLQVFGKLINSLIKKDRLKEA 446
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L+ E+ GL P+ Y II GY + G ++ ++ ME DG + + N ++
Sbjct: 447 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L KM+ GI +V TY ++L
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 541
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ + E++ + + A + L K G+ EEA + I+ L ++Y
Sbjct: 551 AFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK------VYYT 603
Query: 154 NLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LID F SK G D A L ++++ + ++ LC+ + +EA ++
Sbjct: 604 TLIDGF----SKAGNTDFAATLIERMIDEGCTP--DSYTYSVLLHALCKQKRLNEALPIL 657
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M ++G++ + F Y +I R G + +R+ N+M S G + + ++SY
Sbjct: 658 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 717
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L + KM+ G+ V TYN +++ C
Sbjct: 718 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +ISGLC+ G+ +A L + M G+ PS Y +I GY +LG + D +I
Sbjct: 289 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 348
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME +G D N ++ D L +K+ P +V T+ +++N
Sbjct: 349 MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTP-TVVTFTNLING 401
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE L+ +G P+ + +I GY +D R+ N+M S
Sbjct: 363 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 421
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++D +++S + L L ++ +G+ +V TY S+++
Sbjct: 422 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 471
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 9/141 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y L+D FCK +G+ + +L + S Y+K + +++ +C+ G +A
Sbjct: 328 YAILLDGFCK----QGY---LGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDAR 380
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L E+ V GL+P+ Y II G + GLL++ ME DG D N+++ +
Sbjct: 381 ELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGF 440
Query: 270 GDHNELSRMVLWLQKMKDSGI 290
H + SR V + +M+D G
Sbjct: 441 LQHKDESRAVHLIGEMRDRGF 461
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 77/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+ +CK +KR D+ N++++ S+ + ++I GLC++G+ EA
Sbjct: 255 VFSYSILINGYCK--AKR-IDEAKQLFNEMIHQGSTP--NNVSYNTLIHGLCQLGRLREA 309
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++L + M G P+ + Y ++ G+ + G L R+ M+S + + V N+++++
Sbjct: 310 QDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNA 369
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L ++ G+ +V+ Y +++N
Sbjct: 370 MCKSGNLKDARELFSELFVIGLQPNVQIYTTIING 404
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 96/214 (44%), Gaps = 11/214 (5%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
++LA L+ ++ EE+ Q N + +I L K + EA L+ S + +++ +
Sbjct: 96 TALAAGLFKKM-EEAGCQLNVVTYSTLIHSLCKYRRVNEA----LDIFSYMKAKDISPTI 150
Query: 151 F-YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
F Y +LI C + + A LN++ +S ++ ++ C+ G+ AE
Sbjct: 151 FTYTSLIQGLCNFSR---WKEASALLNEM--TSLNIMPNVVTFNVLVDTFCKEGKVLAAE 205
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+++ M G+EP Y ++YGY + + ++ + M + G + D +++++ Y
Sbjct: 206 GVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGY 265
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M G + +YN++++
Sbjct: 266 CKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHG 299
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+FCK + + ++ V S++ G + EA L +
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVV-----TYNSLMYGYSMWTEVVEARKLFDV 245
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M KG +P F Y +I GY + +++ +++ N+M G+ + V N ++
Sbjct: 246 MITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGR 305
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + M +G ++ TY +L+
Sbjct: 306 LREAQDLFKNMHTNGNLPNLYTYAILLDG 334
>gi|255583688|ref|XP_002532598.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527686|gb|EEF29795.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 553
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 15/213 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREE--AETLILETLSKLGSRERELVLFYCNLIDSFCK--H 162
F+ N K V++I + + G + + + L++ K RE E + + ++D+ + H
Sbjct: 292 FETNYKEVSKIYDQMQRSGLQPDVISYALLINAYGK-ARREDEALAVFEEMLDAGVRPTH 350
Query: 163 DSKRGFDDTYARLNQLVNSSSSVY--VKRQ-------ALKSMISGLCEMGQPHEAENLIE 213
+ D +A ++ +V + +V+ ++R + +M+S AEN
Sbjct: 351 KAYNILLDAFA-ISGMVEQARTVFKSMRRDRYTPDLCSYTTMLSAYVNASDMAGAENFFN 409
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
++ GLEP+ Y +I GY + L+ M +M+ G + + ++ +YG +
Sbjct: 410 RLKQDGLEPNVVTYGALIKGYAKTNNLDKMMEKYEEMQLRGVKANQTIFTTIMDAYGKNK 469
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ V+W ++M+ G+P + N +L+ T
Sbjct: 470 DFGSAVIWYKEMEQYGVPPDQKAKNILLSLAKT 502
>gi|125558723|gb|EAZ04259.1| hypothetical protein OsI_26403 [Oryza sativa Indica Group]
Length = 528
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M +DG TV
Sbjct: 383 GRFKEAVDCIEAMKADGLKPSSTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 442
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ ++ LQ MK++G+ V TY +++ +
Sbjct: 443 NSLINAFGEDRRIAEAFSVLQFMKENGLRPDVITYTTLMKA 483
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 58/116 (50%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+ +A +++ G ++G AE +++EM G+ P Y ++ Y R G E ++
Sbjct: 158 RTRAYNALLKGYVKIGSLKNAEQVLDEMSQCGVAPDEATYSLLVDAYTRAGRWESARILL 217
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ME+DG + + + +L+ + D E + L++M SG+ YN ++++
Sbjct: 218 KEMEADGVKPSSYVFSRILAGFRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDT 273
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 7/190 (3%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
V +I+ L + EAE L LE L + Y L+ + K S + +
Sbjct: 126 VTALISSLGSARRVAEAEALFLEFF--LAGEIKPRTRAYNALLKGYVKIGSLKNAEQVLD 183
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
++Q V ++ G+ A L++EM G++PS + + I+ G
Sbjct: 184 EMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRILAG 238
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ G + ++ +M + G R D N+++ ++G +N L + +M++ GI
Sbjct: 239 FRDRGEWQKAFAVLREMHASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEGIEPD 298
Query: 294 VRTYNSVLNS 303
V T+N+++++
Sbjct: 299 VVTWNTLIDA 308
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 93/212 (43%), Gaps = 19/212 (8%)
Query: 149 VLFYCNLIDSFCK---HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
V+ + LID+ CK HD D N + +++ MI+ L E +
Sbjct: 299 VVTWNTLIDAHCKGGRHDRAIELFDEMRESNCPLGTTT--------YNIMINLLGEEQRW 350
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG + + + +
Sbjct: 351 EGVEAMLAEMKEQGLVPNIITYTTLVDVYGRSGRFKEAVDCIEAMKADGLKPSSTMYHAL 410
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF 319
+++Y + ++ M+ G+ S NS++N+ + S+LQ + N
Sbjct: 411 VNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRIAEAFSVLQFMKENGL 470
Query: 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
++ T ++ + + V++ E V+ E M
Sbjct: 471 RPDVITYTTLM--KALIRVEQFEKVPVIYEEM 500
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ LC+ G EA +L+E M GL P Y II G+ + G L + N+M S G
Sbjct: 501 FVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKG 560
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
V +++ ++ L ++ KM + +P +V TYN+++N C T
Sbjct: 561 VAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMT 613
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G A L +EM +GL P F Y ++ G +LG + N+M S
Sbjct: 395 TLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSK 454
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N + + S ++M +G P V TYN +++
Sbjct: 455 GLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHA 504
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++DS+CK D L+++ Y +++GL + G+ +A
Sbjct: 215 VVTYNTMLDSYCKEGR---VDQALELLSEM--QERGCYPNDVTYNVLVNGLSKKGELEQA 269
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ LIEEM GL S + Y +I G+ + GL + +V +M
Sbjct: 270 KGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEM 311
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 51/97 (52%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A+N+ M G++P+ Y ++ Y + G ++ ++++M+ G + V N+++
Sbjct: 198 KAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCYPNDVTYNVLV 257
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ EL + +++M +SG+ S TYN ++N
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLING 294
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 67/152 (44%), Gaps = 8/152 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II K G +A + E LSK + V+ Y LI + H +K+ D + +
Sbjct: 536 IINGFVKNGHLRKAREVFNEMLSKGVAPS---VVTYTVLIHA---HAAKQMLDLAFMYFS 589
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ S V ++I+GLC + EA +EM KG+ P+ F Y +I
Sbjct: 590 KMLEKSVPANVI--TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCN 647
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+G E+ R+ +M + D+ ++ L +
Sbjct: 648 MGYWEEALRLYREMLDRKIQPDSFTHSVFLKN 679
>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
Length = 350
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 14/239 (5%)
Query: 65 VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE--IIAFLD 122
+ +P + NAL L + + S A L + +T + +P +V+ +I L
Sbjct: 94 LGYTPDVFSYNALIKGLCAE----KKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLF 149
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ ++A L E + +LV Y ++ID CK + D A L Q++
Sbjct: 150 KEGEVDKAYFLFHEMPGQ--GFPPDLVT-YSSVIDGLCK---AQAMDKAEASLQQML--Y 201
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + S+I G C +GQ EA L+++M GL+ + Y +I Y ++G +
Sbjct: 202 KGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAE 261
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
I + M G + + +L Y L M L M GIP R +N ++
Sbjct: 262 ARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRDGIPIEHRVFNILI 320
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 56/113 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ +AE +++M KG+ P+ Y +I+GY LG L + R++ +M
Sbjct: 178 SVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGG 237
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G +++ V NM++ Y + M G + TY S+L+ +T
Sbjct: 238 GLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYAT 290
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 87/214 (40%), Gaps = 10/214 (4%)
Query: 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE-EAETLILETLSKLGSREREL 148
L+ AF L++R W N L I D G+R +A ++ + +LG
Sbjct: 47 LAFAAFGLFLR---TGWRVQNVVLNQLIKGLCD--GKRTGDAMDMVFRRMPELGYTPD-- 99
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI C K+ + L+ N + + +I GL + G+ +A
Sbjct: 100 VFSYNALIKGLCAE--KKSQEALELLLHMTANGGYNCSPDVVSYNIVIDGLFKEGEVDKA 157
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EM +G P Y +I G + ++ E + QM G +T N ++
Sbjct: 158 YFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHG 217
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
Y +L V L+KM G+ +V TYN +++
Sbjct: 218 YCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLID 251
>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Vitis vinifera]
Length = 656
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L ++ + +EA+ L + L + S + V+ + ++D C + + + + L
Sbjct: 465 LIYVLSRRNRMKEADDLFEKILDQGVSPD---VIMFNAMVDGHCANGN---VERAFMLLK 518
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ SV +++ G C G+ EA L++EM+ +G++P Y +I GYGR
Sbjct: 519 EM--DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGR 576
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++D R+ ++M S G + N ++ + E L++M + GI T
Sbjct: 577 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDST 636
Query: 297 YNSVLNSCSTIMSMLQD 313
Y S++ + ++++D
Sbjct: 637 YLSLIEGMGNVDTLVED 653
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G A +++ MRVKG+EP + Y +I G + G LE+ + ++M
Sbjct: 289 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 348
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ Y + +L R + +M GI SV TYN ++++
Sbjct: 349 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 398
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYA 173
+I+ + K+G+ EEA L + + ++G + Y LID +C K D +R F
Sbjct: 323 GSLISGMCKEGRLEEASGL-FDKMVEIGLVPNAVT--YNTLIDGYCNKGDLERAFSYRDE 379
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S S Y ++ L G+ EA+++I+EMR KG+ P Y +I G
Sbjct: 380 MVKKGIMPSVSTY------NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 433
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R G + + N+M S G V ++ N + +K+ D G+
Sbjct: 434 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 493
Query: 294 VRTYNSVLNS 303
V +N++++
Sbjct: 494 VIMFNAMVDG 503
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS+VY M++ LC+ G+ +A I M G +P+ Y II+GY G +E
Sbjct: 246 SSTVYT----FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 301
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
RI++ M G D+ ++S L KM + G+ + TYN+++
Sbjct: 302 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 361
Query: 302 NS 303
+
Sbjct: 362 DG 363
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG+C+ G+ EA L ++M GL P+ Y +I GY G LE ++M
Sbjct: 324 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 383
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G N+++ + + +++M+ GI TYN ++N S
Sbjct: 384 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 435
>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
Length = 717
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G+ + AE ++ + + G+ + LV F ++++ CK G + +
Sbjct: 193 LVAAFCRAGELDGAERVV-SLMREEGNAKPNLVTFN-SMVNGLCKAGRMEGARKVF---D 247
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V + +++SG C++G HE+ + EM +GL P + +I+ +
Sbjct: 248 EMVREGLAPDV--VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 305
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE +V QM G R++ V ++ + L +L +++M+ GI SV
Sbjct: 306 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 365
Query: 297 YNSVLNS 303
YN+++N
Sbjct: 366 YNALING 372
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G +A +EEMR G++PS Y +I GY +LG ++ ++ +ME+
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL----------NS 303
+ D V + ++S Y L QKM G+ TY+S++ ++
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452
Query: 304 CSTIMSMLQ 312
C +MLQ
Sbjct: 453 CELFENMLQ 461
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 16/198 (8%)
Query: 113 LVAEIIAFLD------KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
LV +++ F K G E+A L+ + + + G R E+ + LID FCK +
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQ-MRERGLRMNEVT--FTALIDGFCK----K 341
Query: 167 GF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
GF DD + ++ + ++I+G C++G+ A LI EM K ++P
Sbjct: 342 GFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y II GY ++G L+ ++ +M G D + + ++ + L+ + M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459
Query: 286 KDSGIPFSVRTYNSVLNS 303
G+ TY ++++
Sbjct: 460 LQLGVQPDEFTYTTLIDG 477
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + A LI E +K R + V+ Y +I +CK G D+ +LNQ +
Sbjct: 375 KLGRMDLARELIREMEAK---RVKPDVVTYSTIISGYCK----VGNLDSAFQLNQKM-LK 426
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V S+I GLCE + ++A L E M G++P F Y +I G+ + G +E
Sbjct: 427 KGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK 486
Query: 243 MERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ ++M G D V +++ LS E R++ L + +P +++ Y++
Sbjct: 487 ALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--YHEDPVPDNIK-YDA 543
Query: 300 VLNSCS 305
++ CS
Sbjct: 544 LMLCCS 549
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC G+ EA ++ +MR G P+ Y ++ + R G L+ ER+V+ M +G
Sbjct: 158 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG 217
Query: 255 -TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V N +++ + +M G+ V +YN++L+
Sbjct: 218 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267
>gi|50261843|gb|AAT72474.1| AT1G03560 [Arabidopsis lyrata subsp. petraea]
Length = 201
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 85/171 (49%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ + V ++
Sbjct: 7 VFENMIRKGSKPN--VAIYTVLIDGYAKTGS---VEDAIRLLHRMIDEGFNPDVVTYSV- 60
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 61 -VVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 119
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +++
Sbjct: 120 GCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISG 170
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++++M +G D V ++V
Sbjct: 2 YEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 61
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + + + Q + +G+ + Y+S+++
Sbjct: 62 VNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDG 99
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID+ CK K+ + A L + + V + S+I+GLC G+ E
Sbjct: 242 VVTYNTLIDASCK---KKKVKEAMALLRAM--AVGGVAANLISYNSVINGLCGKGRMSEV 296
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EEMR KGL P Y ++ G+ + G L ++++M G + V +++
Sbjct: 297 GELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINC 356
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
LSR V +M+ G+ + RTY ++++
Sbjct: 357 MCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDG 391
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 16/183 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRG---FDDTYARLNQL 178
K+G + L+ E + K S V+ Y LI+ CK + R FD R
Sbjct: 324 KEGNLHQGLVLLSEMVGKGLSPN---VVTYTTLINCMCKAGNLSRAVEIFDQMRVR---- 376
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ + ++I G C+ G +EA ++ EM V G PS Y +++GY LG
Sbjct: 377 -----GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLG 431
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ I+ M G D V + V++ + EL + ++M + G+ TY+
Sbjct: 432 RVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYS 491
Query: 299 SVL 301
S++
Sbjct: 492 SLI 494
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 19/186 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T ++ + K G+ R + +F Y LID FC+ K ++ Y L++
Sbjct: 351 TTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQ---KGLMNEAYKVLSE 407
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
++ S S V +++ G C +G+ EA ++ M +GL P Y +I G+ R
Sbjct: 408 MIVSGFSPSV--VTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRE 465
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
L ++ +M G DTV + ++ +L ++M G+P TY
Sbjct: 466 RELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTY 525
Query: 298 NSVLNS 303
S++N+
Sbjct: 526 TSLINA 531
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 51/110 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C+ G H+ L+ EM KGL P+ Y +I + G L I +QM
Sbjct: 317 TLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVR 376
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R + ++ + ++ L +M SG SV TYN++++
Sbjct: 377 GLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHG 426
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 75/175 (42%), Gaps = 29/175 (16%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY----ARLNQLVNSSSSVYVK 188
L++++LS+LG + L L + ++ GF T A L+ L+ SSS +
Sbjct: 137 LVVKSLSRLGFVPKALTLLHL---------ANRHGFAPTVLSYNAVLDALLRRSSSNHRD 187
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+AE + +M G+ P+ + Y II G G LE +
Sbjct: 188 YD----------------DAERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMR 231
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ME +G + V N ++ + ++ + L+ M G+ ++ +YNSV+N
Sbjct: 232 KMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVING 286
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 142 GSREREL---VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG 198
G ER L V+ Y +I FC+ +R + ++V V S+I G
Sbjct: 442 GMVERGLPPDVVSYSTVIAGFCR---ERELGKAFQMKEEMV--EKGVLPDTVTYSSLIQG 496
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC + EA +L EM +GL P Y +I Y G L R+ ++M G D
Sbjct: 497 LCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPD 556
Query: 259 TVCSNMVLSSYGDHNELSRMV----LWLQKMKDSGIPFSVRTYNSVLNSCS 305
V +++++ N+ +R L L+ + +P V TYN+++ +CS
Sbjct: 557 NVTYSVLINGL---NKKARTKVAKRLLLKLFYEESVPDDV-TYNTLIENCS 603
>gi|297823043|ref|XP_002879404.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325243|gb|EFH55663.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 605
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G+C++G+ AE L+ EM+ KG+ + + +I GY R G++++ I + ME
Sbjct: 350 ALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLINGYCRKGMIDEASMIYDVMEKK 409
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + D N + S + WL +M + G+ S +Y ++++
Sbjct: 410 GFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLID 458
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 61/120 (50%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V + +L ++ GLC G+ +++ LI+E KG++P + Y II Y +
Sbjct: 199 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSGKGIKPEAYTYNTIINAYLKHRDFSG 258
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+E+I+ M+ DG + V +++ + +++ + +M++ GI + Y S+++
Sbjct: 259 VEKILKVMKKDGVVYNKVTYTLLIELSVKNGKMNDVEKLFDEMRERGIESDIHVYTSLIS 318
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 65/156 (41%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y NLID +CK ++KR F + SS V MI C+ G+ E
Sbjct: 453 YTNLIDVYCKEGNVEEAKRLFVEM---------SSKEVQPNAITYNVMIYAYCKQGKVKE 503
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L M+ G++P + Y +I+G +++ R+ ++M G ++V +++S
Sbjct: 504 ARKLWANMKANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMIS 563
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++K G + Y +++ S
Sbjct: 564 GLSKAGKSDEAFGLYDEIKRKGYTIDNKVYTALIGS 599
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 67/151 (44%), Gaps = 10/151 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK + +N++ S V + + ++I+G C G EA +
Sbjct: 348 YGALIDGVCKVGEMGAAE---ILMNEM--QSKGVNITQVVFNTLINGYCRKGMIDEASMI 402
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-- 269
+ M KG + F I + RL ++ ++ + +M G R+ TV ++ Y
Sbjct: 403 YDVMEKKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVRLSTVSYTNLIDVYCK 462
Query: 270 -GDHNELSRMVLWL--QKMKDSGIPFSVRTY 297
G+ E R+ + + ++++ + I ++V Y
Sbjct: 463 EGNVEEAKRLFVEMSSKEVQPNAITYNVMIY 493
>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
Length = 694
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G+ + AE ++ + + G+ + LV F ++++ CK G + +
Sbjct: 193 LVAAFCRAGELDGAERVV-SLMREEGNAKPNLVTFN-SMVNGLCKAGRMEGARKVF---D 247
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V + +++SG C++G HE+ + EM +GL P + +I+ +
Sbjct: 248 EMVREGLAPDV--VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 305
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE +V QM G R++ V ++ + L +L +++M+ GI SV
Sbjct: 306 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 365
Query: 297 YNSVLNS 303
YN+++N
Sbjct: 366 YNALING 372
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G +A +EEMR G++PS Y +I GY +LG ++ ++ +ME+
Sbjct: 333 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 392
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL----------NS 303
+ D V + ++S Y L QKM G+ TY+S++ ++
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452
Query: 304 CSTIMSMLQ 312
C +MLQ
Sbjct: 453 CELFENMLQ 461
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 16/198 (8%)
Query: 113 LVAEIIAFLD------KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
LV +++ F K G E+A L+ + + + G R E+ + LID FCK +
Sbjct: 289 LVPDVVTFTSLIHATCKAGNLEQAVALVAQ-MRERGLRMNEVT--FTALIDGFCK----K 341
Query: 167 GF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
GF DD + ++ + ++I+G C++G+ A LI EM K ++P
Sbjct: 342 GFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 399
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y II GY ++G L+ ++ +M G D + + ++ + L+ + M
Sbjct: 400 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 459
Query: 286 KDSGIPFSVRTYNSVLNS 303
G+ TY ++++
Sbjct: 460 LQLGVQPDEFTYTTLIDG 477
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + A LI E +K R + V+ Y +I +CK G D+ +LNQ +
Sbjct: 375 KLGRMDLARELIREMEAK---RVKPDVVTYSTIISGYCK----VGNLDSAFQLNQKM-LK 426
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V S+I GLCE + ++A L E M G++P F Y +I G+ + G +E
Sbjct: 427 KGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK 486
Query: 243 MERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ ++M G D V +++ LS E R++ L + +P +++ Y++
Sbjct: 487 ALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--YHEDPVPDNIK-YDA 543
Query: 300 VLNSCS 305
++ CS
Sbjct: 544 LMLCCS 549
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC G+ EA ++ +MR G P+ Y ++ + R G L+ ER+V+ M +G
Sbjct: 158 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG 217
Query: 255 -TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V N +++ + +M G+ V +YN++L+
Sbjct: 218 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267
>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 94/197 (47%), Gaps = 8/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L ++ + +EA+ L + L + S + V+ + ++D C + + + + L
Sbjct: 443 LIYVLSRRNRMKEADDLFEKILDQGVSPD---VIMFNAMVDGHCANGN---VERAFMLLK 496
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ SV +++ G C G+ EA L++EM+ +G++P Y +I GYGR
Sbjct: 497 EM--DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGR 554
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++D R+ ++M S G + N ++ + E L++M + GI T
Sbjct: 555 RGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDST 614
Query: 297 YNSVLNSCSTIMSMLQD 313
Y S++ + ++++D
Sbjct: 615 YLSLIEGMGNVDTLVED 631
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G A +++ MRVKG+EP + Y +I G + G LE+ + ++M
Sbjct: 267 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 326
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ Y + +L R + +M GI SV TYN ++++
Sbjct: 327 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 376
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYA 173
+I+ + K+G+ EEA L + + ++G + Y LID +C K D +R F
Sbjct: 301 GSLISGMCKEGRLEEASGL-FDKMVEIGLVPNAVT--YNTLIDGYCNKGDLERAFSYRDE 357
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S S Y ++ L G+ EA+++I+EMR KG+ P Y +I G
Sbjct: 358 MVKKGIMPSVSTY------NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 411
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R G + + N+M S G V ++ N + +K+ D G+
Sbjct: 412 YSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 471
Query: 294 VRTYNSVLNS 303
V +N++++
Sbjct: 472 VIMFNAMVDG 481
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 4/122 (3%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS+VY M++ LC+ G+ +A I M G +P+ Y II+GY G +E
Sbjct: 224 SSTVY----TFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIE 279
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
RI++ M G D+ ++S L KM + G+ + TYN+++
Sbjct: 280 GARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLI 339
Query: 302 NS 303
+
Sbjct: 340 DG 341
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG+C+ G+ EA L ++M GL P+ Y +I GY G LE ++M
Sbjct: 302 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 361
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G N+++ + + +++M+ GI TYN ++N S
Sbjct: 362 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 413
>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
Length = 1024
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 87/188 (46%), Gaps = 14/188 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFD--DTYA 173
+I L K G+ E+A IL+ + LG + +C LI+ +C+ H+ R + D
Sbjct: 374 LIHGLCKFGKMEKAAE-ILKGMVTLGCKPNSRT--FCLLIEGYCREHNMGRALELLDEME 430
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ N LV S+ S +MI+GLC A L+E+M GL+P+ Y +I
Sbjct: 431 KRN-LVPSAVSY-------GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMA 482
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y G +E+ R+++ M G D C N ++S ++ +L +++ G+
Sbjct: 483 YASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPD 542
Query: 294 VRTYNSVL 301
T+ + +
Sbjct: 543 AVTFGAFI 550
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 59/122 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G+ +A L +EM +KG+ P+ F Y ++ G + G ++ ++ + M
Sbjct: 653 SLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEK 712
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G D+V + ++ Y ++ +M G+ YN++++ C M +
Sbjct: 713 GLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKA 772
Query: 314 LN 315
+N
Sbjct: 773 MN 774
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V Y L+ + CK RG +++ +N + +Y +I G+C++G E
Sbjct: 228 VYTYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIY------SLVIEGMCQVGDIDE 281
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD-TVCSNMV- 265
A L M KGL P+ + Y I G R + + + +M+ G + D CS ++
Sbjct: 282 AVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALID 341
Query: 266 -LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GD +E+ R+ M GIP ++ TYN +++
Sbjct: 342 GFMREGDIDEVLRIK---DVMVSCGIPINLITYNVLIHG 377
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 86/185 (46%), Gaps = 17/185 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKH-DSKRGFDDTYARLNQL 178
K G+ +EA L+ S+L +E+ LV Y +LI FCK + ++ F+ +
Sbjct: 625 KNGRVQEA----LKVFSEL--KEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKG 678
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ + +Y +++ GLC+ G A L + M KGLEP Y +I GY +
Sbjct: 679 IAPNIFIY------NALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSE 732
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+ + + ++M S G + + N ++ ++ + + ++M G ++ ++N
Sbjct: 733 NVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL-SFN 791
Query: 299 SVLNS 303
++++
Sbjct: 792 TLIDG 796
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ ++I G C+ + EA L +EM K + P Y +I + + G +E+ + +M
Sbjct: 789 SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 848
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ VDTV ++ Y + S + +KM G+ TY V+
Sbjct: 849 QERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVI 899
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 17/157 (10%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQL 178
K+G E+A L E L K + L + LID +CK ++ + F + A+
Sbjct: 765 KEGDMEKAMNLFREMLQKGFAT----TLSFNTLIDGYCKSCKIQEASQLFQEMIAK---- 816
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ ++I C+ G+ EA L +EM+ + L Y ++YGY +LG
Sbjct: 817 -----QIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLG 871
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
++ + +M + G + D V +V+ ++ + L
Sbjct: 872 QSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 908
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 51/114 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q + I GL + G+ EA + E++ KGL P F Y +I G+ + G +E + ++
Sbjct: 614 QTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDE 673
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G + N ++ ++ R M + G+ TY+++++
Sbjct: 674 MCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDG 727
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 52/103 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ +GLC + +EA+ EEM+ GL+P +I G+ R G ++++ RI + M S G
Sbjct: 304 ITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCG 363
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++ + N+++ ++ + L+ M G + RT+
Sbjct: 364 IPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTF 406
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 49/116 (42%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C A L++EM + L PS Y +I G L +++ +M G
Sbjct: 409 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 468
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + V ++++ +Y + L M SG+ + YN++++ S M
Sbjct: 469 LKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKM 524
>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
Length = 924
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 60/105 (57%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ +EA +L + M KG++PS Y +++GYG+ G L +M ++N M ++G +
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N V+ +Y + ++ KMK G+ +V TY +++++
Sbjct: 505 HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDA 549
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 11/180 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
+GQ ++A +L LE +G V+ Y +ID CK +D + ++ +
Sbjct: 206 EGQVDKAYSLFLE----MGVSPD--VVTYNTIIDGLCKAQEVDRAEDVFQQMVE-----K 254
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V ++I GLC+ + AE + ++M KG++PS Y II G + ++
Sbjct: 255 GVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRA 314
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + QM G + D V N ++ + + Q+M D G+ TY +++
Sbjct: 315 EGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDG 374
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS---------SSSVY------------- 186
V+ Y LID+ CK DD + NQ++N +S VY
Sbjct: 540 VVTYGTLIDALCKLGR---VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEE 596
Query: 187 ----VKRQALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ Q ++ +++ LC+ G+ EA LI+ M GL+P Y +I G+
Sbjct: 597 LFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHC 656
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+++ ++++ M S G + + V N +L Y + ++M G+ V
Sbjct: 657 FASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVE 716
Query: 296 TYNSVLNS 303
TYN++LN
Sbjct: 717 TYNTILNG 724
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
II L K + + AE + + + K G + + Y +ID CK + + ++
Sbjct: 231 IIDGLCKAQEVDRAEDVFQQMVEK-GVKPNNVT--YNTIIDGLCKAQEVDMAEGVFQKMV 287
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ V S+ Y ++I GLC+ AE + ++M +G++P Y II G
Sbjct: 288 DKGVKPSNVTY------NTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLC 341
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ ++ E + QM G + D + +++ + R Q+M D G+ +
Sbjct: 342 KAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNG 401
Query: 296 TYNSVLNS 303
TYN +++
Sbjct: 402 TYNCLIHG 409
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 40/185 (21%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID CK + D Q+++ V +I GLC+ AE +
Sbjct: 333 YNTIIDGLCK---AQAIDKAEGVFQQMIDKG--VKPDNLTYTIIIDGLCKAQSVDRAEGV 387
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD---------GTRVDTVCS 262
++M KG++P+ Y C+I+GY G E++ + + +M + G +D +C
Sbjct: 388 FQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCK 447
Query: 263 N--------------------------MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
N ++L YG LS M L M +GI + R
Sbjct: 448 NGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRI 507
Query: 297 YNSVL 301
+N+V+
Sbjct: 508 FNTVI 512
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L + G+ EA L + + SR+ + Y ++D FCK++ FD+ +
Sbjct: 721 ILNGLFRSGRFSEARELYVNMIK---SRKLWSICTYSIILDGFCKNNC---FDEAFKIFQ 774
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L S + + MI GL + G+ +A +L + GL PS Y+ I
Sbjct: 775 SL--CSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIE 832
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE+++ + + ME GT ++ N ++ D E+ R +L K+ + T
Sbjct: 833 EGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEAST 892
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 91/187 (48%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L + G+ +E +++E +S+ G E+ Y L++ +CK + F
Sbjct: 59 IINGLCRDGRLKETSEVLVE-MSRKGYVPDEVT--YNTLVNGYCKEGN---FHQALVLHA 112
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + S V S+I+ +C+ G + A ++M V+GL P+ Y II G+ +
Sbjct: 113 EMVRNGLSPNV--VTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQ 170
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
GLL++ R++N+M G V N +++ + + + LQ M G+ V +
Sbjct: 171 QGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVS 230
Query: 297 YNSVLNS 303
Y+++++
Sbjct: 231 YSTIISG 237
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C++ + EA + M +KGLEP+ + II G R G L++ ++ +M
Sbjct: 23 TMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRK 82
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N +++ Y + ++ +M +G+ +V TY S++NS
Sbjct: 83 GYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINS 132
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 16/187 (8%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSS 183
G+ EEA L+ + + K + V+ Y +I F ++ R F + + V +
Sbjct: 207 GRMEEAIGLLQDMVGKGVLPD---VVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDA 263
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
Y S+I GLCE + EA ++ +EM L P F Y +I Y + G L
Sbjct: 264 VTY------SSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKA 317
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDH---NELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ ++M G D V N++++ E R++L L D IP +V TYN++
Sbjct: 318 LHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKL--FYDDSIPSAV-TYNTL 374
Query: 301 LNSCSTI 307
+ +C I
Sbjct: 375 IENCCNI 381
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 19/186 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T ++ ++ K G+ R + F Y +I+ F + D+ Y LN+
Sbjct: 127 TSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGL---LDEAYRVLNE 183
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ + S ++I+G C +G+ EA L+++M KG+ P Y II G+ R
Sbjct: 184 M--TRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARN 241
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
L+ ++ +M D V + ++ + L+ Q+M +P TY
Sbjct: 242 QELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTY 301
Query: 298 NSVLNS 303
+++N+
Sbjct: 302 TTLINA 307
>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
Length = 772
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 97/210 (46%), Gaps = 9/210 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ +++ N +I + K GQ E AE L+LE SK + LV+F
Sbjct: 341 AFALFDEMSQRDIVP-NAHTYGALIGGVCKAGQMEAAEILLLEMQSK--GVDLNLVIFNT 397
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+ D +C+ RG D RL Q + + + +GLC++ + EA+ ++
Sbjct: 398 TM-DGYCR----RGKMDEALRL-QAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILN 451
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
M KG++P+ + I Y + G L + ER+ ME G + + N ++ +Y
Sbjct: 452 SMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKE 511
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +M + G+ + TY+S+++
Sbjct: 512 KVKQAHKIKSEMINKGLLPDLYTYSSLIHG 541
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+ R+ E + F+ + + +I L ++G+ E+A+ L+ E + K + V Y L+
Sbjct: 202 FFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPN--VFTYNTLL 259
Query: 157 DSFCKHDSKRGFDD---------------TYARLNQLVNSSSSVYVKRQALK-------- 193
+++ ++G D+ TY+ L Q +SS + + +
Sbjct: 260 NAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIE 319
Query: 194 -------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
SMIS +G A L +EM + + P+ Y +I G + G +E E +
Sbjct: 320 MDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEIL 379
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M+S G ++ V N + Y ++ + M+ GI V TYN + N
Sbjct: 380 LLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANG 436
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 14/168 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G EAE L + K G E ++ Y LID++CK K + ++++N
Sbjct: 474 KEGNLAEAERL-FRDMEKKG--EVPNIITYNTLIDAYCK---KEKVKQAHKIKSEMINKG 527
Query: 183 --SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+Y S+I G C +G+ EA L EMR+KG+ + Y +I G + G
Sbjct: 528 LLPDLY----TYSSLIHGECIVGRVDEALKLFNEMRLKGITRNVATYTSMISGLSKEGRA 583
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ ++ ++M G D ++ S+ H L+ L +QK DS
Sbjct: 584 DEAFKLYDEMMKIGLIPDDRVFTSLVGSF--HKPLTHAGLDIQKASDS 629
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 70/125 (56%), Gaps = 6/125 (4%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L +I+GLC+ G+ +A + ++M VKG P+ F + ++ GY R GL +++ M
Sbjct: 153 TLNLLIAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGM 212
Query: 251 ESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
S G + + V N ++SS+ G + E R+V ++M++ G+ V T+NS +++ +
Sbjct: 213 GSFGVQPNKVIYNTLISSFCREGRNEEAERLV---ERMREDGLFPDVVTFNSRISALCSA 269
Query: 308 MSMLQ 312
+L+
Sbjct: 270 GKILE 274
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 32/217 (14%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCK----------------HDSK 165
K+G+ EAE L L K+ R +L CN+ ID CK H S
Sbjct: 447 KEGRIFEAEKL----LQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSA 502
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMIS------GLCEMGQPHEAENLIEEMRVKG 219
+ LV+SSS+ ++ L +I+ GLC+ G+ EA EM K
Sbjct: 503 -ALGNLGNSFIGLVDSSSN---GKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKS 558
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
L P Y I+ + + G + R++ ME G N ++ G N++ +
Sbjct: 559 LHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIY 618
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
L MK+ GI ++ TYN+++ SC ++D S
Sbjct: 619 GLLDDMKEKGITPNICTYNNMI-SCLCEGGRIKDATS 654
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA L G+ E+A + + + G R E + L+ +C+ R
Sbjct: 157 LIAGLCDSGRFEDARE-VFDKMGVKGCRPNEFS--FGILVRGYCRAG-------LSMRAL 206
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+L++ S V+ + ++IS C G+ EAE L+E MR GL P + I
Sbjct: 207 ELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISAL 266
Query: 235 GRLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + RI M+ D R + N++L + L ++ MK +G
Sbjct: 267 CSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGN 326
Query: 291 PFSVRTYN 298
+ +YN
Sbjct: 327 LMELESYN 334
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 64/148 (43%), Gaps = 33/148 (22%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------ 164
II L K G+ +EA +E + K + + Y I SFCKH
Sbjct: 534 IINGLCKAGRLDEARKKFIEMVGKSLHPDS---IIYDTFIHSFCKHGKISSAFRVLKDME 590
Query: 165 KRGFDDTYARLNQLV------NSSSSVY-----VKRQAL-------KSMISGLCEMGQPH 206
KRG + + N L+ N +Y +K + + +MIS LCE G+
Sbjct: 591 KRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIK 650
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+A +L++EM KG+ P+ ++ +I +
Sbjct: 651 DATSLLDEMLQKGISPNISSFRLLIKAF 678
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 18/130 (13%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ G C+ G EA+ L+E M+ G Y + G R G L + + + +M G
Sbjct: 301 MLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKG 360
Query: 255 ---------TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
T +D +C N ++S +RM++ L M SGI TY+++L+ C
Sbjct: 361 IEPNIYSFNTVMDGLCKNGLISD-------ARMIMGL--MISSGIGPDTVTYSTLLHGCC 411
Query: 306 TIMSMLQDLN 315
+ +L+ N
Sbjct: 412 STGKVLKANN 421
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 13/186 (6%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYARLNQ 177
L + G+ +EA L E +SK ++V L Y LI+ FC+ D +
Sbjct: 319 LCRNGRLKEAFELFEEMVSK-----DQIVPDPLTYNVLINGFCREGKA---DRARNVIEF 370
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ N+ V + +++ GLC+ G+ +A+ ++ EM+ GL+P Y +I + R
Sbjct: 371 MKNNGCCPNVFNYS--ALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRN 428
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G +++ ++ +M+ + + DTV N++L + ++K+ G+ + +Y
Sbjct: 429 GQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSY 488
Query: 298 NSVLNS 303
VLNS
Sbjct: 489 RIVLNS 494
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 3/144 (2%)
Query: 161 KHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
K+ +RG D + + ++ NS S Y +++ GLC G+ EA L EEM K
Sbjct: 281 KYHCRRGDIDSAFEVVKEMRNSKYS-YPNVITYSTLMDGLCRNGRLKEAFELFEEMVSKD 339
Query: 220 -LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+ P Y +I G+ R G + ++ M+++G + + ++ +L
Sbjct: 340 QIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDA 399
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLN 302
L +MK SG+ TY S++N
Sbjct: 400 KGVLAEMKSSGLKPDAITYTSLIN 423
>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
mitochondrial [Vitis vinifera]
Length = 817
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 87/191 (45%), Gaps = 12/191 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L G+ +EAE L + E + + Y ++D +CK + R + ++RL
Sbjct: 513 IIEGLCMAGKVKEAEAF-------LNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRL- 564
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
S + VK+++ ++S LC G+ +A L+E M +EP+ Y +I + R
Sbjct: 565 ----SKQGILVKKKSCFKLLSSLCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCR 620
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ + + + + G D + M+++ Y N L MK+ GI V T
Sbjct: 621 DGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVIT 680
Query: 297 YNSVLNSCSTI 307
Y VL+ S +
Sbjct: 681 YTVVLDGHSKV 691
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
I+ C H KR D Y L L +++ + A ++I G C + EAE++ +M
Sbjct: 269 IEGLCSH--KRS-DLGYEALRAL--RAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDM 323
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P G+ Y +I+ Y + G L + N M S+G + + V + +L +
Sbjct: 324 VNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMA 383
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S +V ++ +DSGI YN V+++
Sbjct: 384 SEVVDQFKEFRDSGIFLDEVLYNIVVDA 411
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 105/232 (45%), Gaps = 32/232 (13%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A+ L+ R++++ K ++++ L +G+ ++A ++LE + L +++ Y
Sbjct: 557 AYELFSRLSKQGILV-KKKSCFKLLSSLCMEGEYDKA-LILLERMLALDVEPNQIM--YG 612
Query: 154 NLIDSFCKH-DSKRG---FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
LI +FC+ D KR FD LV + V + MI+G C + EA
Sbjct: 613 KLIGAFCRDGDMKRAQLVFD-------MLVERGITPDVITYTM--MINGYCRVNCLREAR 663
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE---------------DMERIVNQMESDG 254
++ +M+ +G++P Y ++ G+ ++ L D ++M+ G
Sbjct: 664 DIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFSKGSEEEKMDASPFWSEMKEMG 723
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ D VC +++ S+ N L + +M G+ + TY ++L+SC +
Sbjct: 724 IKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPDIVTYTALLSSCCS 775
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 5/154 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI ++CK + A N +V S+ + + S++ LCEMG E +
Sbjct: 335 YGALIHAYCKAGN---LLQAVALHNDMV--SNGIKTNCVIVSSILQCLCEMGMASEVVDQ 389
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E R G+ Y ++ +LG +E+ ++N+M+ +D V +++ Y
Sbjct: 390 FKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCL 449
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+L ++MK+ GI + TYN ++ S
Sbjct: 450 QGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFS 483
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/138 (21%), Positives = 68/138 (49%), Gaps = 5/138 (3%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+ Y ++D+ CK ++ LN++ S+ V ++I+G C G+ +A+
Sbjct: 403 VLYNIVVDALCKLGK---VEEAVELLNEMKGRRMSLDVVHYT--TLIAGYCLQGKLVDAK 457
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
N+ EEM+ +G+EP Y ++ G+ R GL ++ +++ + + G + ++ N ++
Sbjct: 458 NMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGL 517
Query: 270 GDHNELSRMVLWLQKMKD 287
++ +L ++D
Sbjct: 518 CMAGKVKEAEAFLNTLED 535
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 54/119 (45%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S +++ ++ LC++G+ EA L+ EM+ + + Y +I GY G L D
Sbjct: 396 SGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVD 455
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +M+ G D V N+++ + + + L + G+ + T+N ++
Sbjct: 456 AKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRII 514
>gi|115445137|ref|NP_001046348.1| Os02g0226900 [Oryza sativa Japonica Group]
gi|49388538|dbj|BAD25660.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|49388672|dbj|BAD25856.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535879|dbj|BAF08262.1| Os02g0226900 [Oryza sativa Japonica Group]
Length = 637
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ S L ++ Q NL ++M+ G+ P F Y +I YGR+GL++ + ME+
Sbjct: 434 VFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS 493
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ D V N +++ G H +L + ++M++ G V TY S+L C
Sbjct: 494 CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTY-SILIEC 542
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + G EA L +EM+ KG +P F Y +I +G+ +E + ++M S+
Sbjct: 503 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISE 562
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYN 298
G + V N++L + + MK G IP S+ TY+
Sbjct: 563 GCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSI-TYS 607
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 67/138 (48%), Gaps = 10/138 (7%)
Query: 178 LVNSSSSVYVKRQA---------LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+V + SV+ QA +M+ GLC G+ EAE L+ + +G EP+ Y
Sbjct: 157 MVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYN 216
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I GY +G LE + +M+ +G + ++S + +L R ++ +M D+
Sbjct: 217 ALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDA 276
Query: 289 GIPFSVRTYNSVLNS-CS 305
G+ +V TY +++ CS
Sbjct: 277 GLVPNVVTYTALIQGQCS 294
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 91/199 (45%), Gaps = 8/199 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S N + +I L K + EA+ L+L +L + G + E+V Y +LID CK
Sbjct: 309 ENSGLVPNEWTCSVLIDALCKHERVGEAQ-LLLGSLIQKGIKVNEIV--YTSLIDGLCKA 365
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D RL Q + S V S+I GLC + EA ++++M KG++P
Sbjct: 366 GRFAAAD----RLMQTLVSQGFV-PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQP 420
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
S Y II R + ++I+++M + G + D + + SY + +
Sbjct: 421 SPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMM 480
Query: 283 QKMKDSGIPFSVRTYNSVL 301
M D G+ ++ TYN+++
Sbjct: 481 LHMVDHGVCPNLVTYNALI 499
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 84/194 (43%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P + A ++ L G+ EAETL+ + +++ G V+ Y LID +C
Sbjct: 176 DPHVYATMVHGLCGAGRTREAETLLSDAMAE-GFEPN--VVVYNALIDGYCNVGDLELAV 232
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D + R++ VN S + +ISG C+ + A L M GL P+ Y
Sbjct: 233 DVFERMD--VNGCSP---NVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTA 287
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I G G L+ R++ ME+ G + ++++ + H + L L + G
Sbjct: 288 LIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKG 347
Query: 290 IPFSVRTYNSVLNS 303
I + Y S+++
Sbjct: 348 IKVNEIVYTSLIDG 361
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC G EA ++ M+ G P Y +++G G + E +++ ++
Sbjct: 147 ALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAE 206
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ Y + +L V ++M +G +VRTY +++
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISG 256
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 64/154 (41%), Gaps = 5/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI C S D Y L + NS + +I LC+ + EA
Sbjct: 282 VVTYTALIQGQC---SDGQLDCAYRLLQSMENSG--LVPNEWTCSVLIDALCKHERVGEA 336
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L+ + KG++ + Y +I G + G +R++ + S G D + ++
Sbjct: 337 QLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDG 396
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
ELS +L L M + G+ S TY +++
Sbjct: 397 LCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIID 430
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 97/207 (46%), Gaps = 13/207 (6%)
Query: 99 MRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
MR +E S+ P LV + ++ L + G+ +EA L E +S+ L Y LI
Sbjct: 259 MRNSEFSY----PNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLT--YNVLI 312
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
+ FC RG AR S+ Y +++ GLC++G+ +A+ ++ E++
Sbjct: 313 NGFC-----RGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAEIK 367
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
GL+P Y +I R G ++ ++ +M+ +G + D+V N++L +
Sbjct: 368 GSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKENGCQADSVTFNVLLGGLCREGKFE 427
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++K+ G+ + +Y VLNS
Sbjct: 428 EALDMVEKLPQQGVYLNKGSYRIVLNS 454
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 112/259 (43%), Gaps = 15/259 (5%)
Query: 48 LAVTRDSKAASRLISKFVASSPQF---IALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
LA + A R++ + + +F I +N + H S + H +L F + + E+
Sbjct: 136 LARCNNFHAVDRVLHQMTYETCKFHEGIFVNLMKHF-SKSSLHEKLLHAYFSIQPIVREK 194
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+PK ++ + L + + A L+L L +R+ + +F L+ CK+
Sbjct: 195 P----SPKALSTCLNLLLDSNRVDLARKLLLHAKRDL-TRKPNVCVFNI-LVKYHCKNGD 248
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPS 223
D + + ++ NS S Y +++ GLC G+ EA +L EEM + + P
Sbjct: 249 ---LDSAFEIVEEMRNSEFS-YPNLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPD 304
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G+ R G + ++ M+S+G + + ++ +L L
Sbjct: 305 PLTYNVLINGFCRGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLA 364
Query: 284 KMKDSGIPFSVRTYNSVLN 302
++K SG+ TY S++N
Sbjct: 365 EIKGSGLKPDAVTYTSLIN 383
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 85/220 (38%), Gaps = 9/220 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ + +P +I + G+ + A +I + + G V Y
Sbjct: 288 AFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNVI-QFMKSNGCYPN--VYNYS 344
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
L+D CK +D L ++ S + S+I+ LC G+ EA L+E
Sbjct: 345 ALVDGLCKVGK---LEDAKGVLAEI--KGSGLKPDAVTYTSLINFLCRNGKSDEAIELLE 399
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM+ G + + ++ G R G E+ +V ++ G ++ +VL+S
Sbjct: 400 EMKENGCQADSVTFNVLLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKC 459
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
EL R L M G T N +L C M+ D
Sbjct: 460 ELKRAKELLGLMLRRGFQPHYATSNELL-VCLCKAGMVDD 498
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G C+ G+ H+A ++EEM+ K ++P+ Y I+ G ++ L++ + +
Sbjct: 333 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 392
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ V + ++ +G + L L++M G+ +V T+NS+L++
Sbjct: 393 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 446
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 8/123 (6%)
Query: 187 VKRQALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+K Q LK SMI LC+ G+ EAE L +M + P + Y +I GYG G
Sbjct: 9 LKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIMGYGSAGR 68
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
ED +++ ++ G V N +L+ G ++ + + MK P S TYN
Sbjct: 69 FEDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEALSLFEVMKKDAEPNS-STYNI 127
Query: 300 VLN 302
+++
Sbjct: 128 IID 130
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 152 YCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y ++D FCK + ++ + V + + Y +++ GL ++ + EA
Sbjct: 335 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATY------GAIVDGLAKIDRLDEAYM 388
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EE + KG+E + Y +I G+G++G +++ I+ +M G + N +L +
Sbjct: 389 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 448
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSIL 324
E++ ++ Q MK+ P + TY+ ++N + QD+ +++
Sbjct: 449 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 508
Query: 325 ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
T +++ ++ V + D+ L E K + G
Sbjct: 509 TYTTMIS--GLAKVGNITDAYSLFERFKANGG 538
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP V +I L K+GQ +EA L E + G +V Y +LI +F H K
Sbjct: 189 NPDCVTYCSLIDGLGKKGQVDEAYRL-FEKMLDAGHNANPVV--YTSLIRNFFIHGRK-- 243
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D + +L+ + L + + + + G+ + + E++R G P Y
Sbjct: 244 -EDGHKIFKELIRRGCKPDL--TLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 300
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I+G + G + I + M+ G +D N V+ + ++ + L++MK+
Sbjct: 301 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 360
Query: 288 SGIPFSVRTYNSVLNSCSTI 307
+ +V TY ++++ + I
Sbjct: 361 KCVQPTVATYGAIVDGLAKI 380
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A E++ +GL+P Y +I+ + G L + E + QME++ + N ++
Sbjct: 2 AWKFFHELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELFAQMEAERSVPCAYAYNTMIM 61
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
YG L+++++ G SV ++NS+L
Sbjct: 62 GYGSAGRFEDAYKLLERLRERGCIPSVVSFNSIL 95
>gi|449463418|ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
gi|449499065|ref|XP_004160711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 439
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA +++EM +PS F Y +++ YG +ED +ME +G
Sbjct: 200 MVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNG 259
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++S++ N++ + L+ M G+ + RT N ++NS
Sbjct: 260 VMADVAAYNALISAFCKANKMKNVYRVLKDMDLKGVNPNSRTCNIIINS 308
>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 96/201 (47%), Gaps = 23/201 (11%)
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D Y +N+ VN + VY +I+G C++ +A +L EMR + + P Y
Sbjct: 324 DGYCLVNE-VNKAKHVY------SIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNS 376
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I G + G + +V++M G D + N ++ + ++ + + + ++K+KD G
Sbjct: 377 LIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQG 436
Query: 290 IPFSVRTYNSVLNS-CST-----IMSMLQDLNSNDFPLSI---------LELTEVLNEEE 334
I + TYN +++ C + QDL + L++ L L +LNE E
Sbjct: 437 IQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAE 496
Query: 335 VSVVKELEDSSVLDEAMKWDS 355
+++ ++ED+ + +A+ ++
Sbjct: 497 -TLLSKMEDNGCVPDAVTCET 516
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 8/171 (4%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
F +N +I L K G+ A ++ + KL S + V+ Y +ID CK +
Sbjct: 172 FHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTD---VVMYSTIIDGLCK---DK 225
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+D Y ++++ S V L S+I G C +GQ EA L+ EM +K + P +
Sbjct: 226 LVNDAYELYSEMITKRISPTV--VTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYT 283
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ ++ + G +++ + + M +G D V + ++ Y NE+++
Sbjct: 284 FNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNK 334
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +LID+ CK+ D A + ++ + + +I GLC+ G+ +A
Sbjct: 406 IITYNSLIDALCKN---HHVDKAIALVKKI--KDQGIQLDMYTYNILIDGLCKQGRLKDA 460
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + +++ +KG + + Y +I G GLL + E ++++ME +G D V ++ +
Sbjct: 461 QVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRA 520
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
++++ R L++M G+
Sbjct: 521 LFENDKNERAEKLLREMIARGL 542
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI+ CK R ++ +LV++ +Y ++I GLC+ ++A
Sbjct: 179 YGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMY------STIIDGLCKDKLVNDAYE 232
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM K + P+ +IYGY +G ++ ++ +M D N+++ +
Sbjct: 233 LYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALC 292
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M G+ V TY+S+++
Sbjct: 293 KEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDG 325
>gi|255684868|gb|ACU27923.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684870|gb|ACU27924.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684872|gb|ACU27925.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684874|gb|ACU27926.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684876|gb|ACU27927.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684878|gb|ACU27928.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684880|gb|ACU27929.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684882|gb|ACU27930.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684884|gb|ACU27931.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684886|gb|ACU27932.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684888|gb|ACU27933.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684890|gb|ACU27934.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684892|gb|ACU27935.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684894|gb|ACU27936.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684896|gb|ACU27937.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684898|gb|ACU27938.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684908|gb|ACU27943.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684910|gb|ACU27944.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684914|gb|ACU27946.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684918|gb|ACU27948.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684922|gb|ACU27950.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684930|gb|ACU27954.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684932|gb|ACU27955.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684934|gb|ACU27956.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684936|gb|ACU27957.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684938|gb|ACU27958.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684940|gb|ACU27959.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684942|gb|ACU27960.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684944|gb|ACU27961.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684946|gb|ACU27962.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684948|gb|ACU27963.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684950|gb|ACU27964.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684952|gb|ACU27965.1| At1g03560-like protein [Arabidopsis thaliana]
Length = 193
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 1 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 54
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 55 -VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 113
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +++
Sbjct: 114 GCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILISG 164
>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
Length = 700
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 74/154 (48%), Gaps = 5/154 (3%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+ Y LI+ +C+ RG + Q+ S + ++I+GLC++ +AE
Sbjct: 370 VIYNTLINGYCQVRDLRG---AFCIFEQM--KSRHIRPDHITYNALINGLCKLEMVTKAE 424
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+L+ EM G++PS + +I YG G LE +++ M+ G + D + V+ ++
Sbjct: 425 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAF 484
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ V L M + + + YNS++++
Sbjct: 485 CKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDA 518
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 88/187 (47%), Gaps = 15/187 (8%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ E+ T +L + + G + V+ + +++ +FCK+ + A L+ ++
Sbjct: 453 GQLEKCFT-VLSDMQQKGIKSD--VISFGSVVKAFCKNGK---IPEAVAILDDMI--YKD 504
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V Q S+I E G +A L+E+M+ G+ S Y ++ G R +++ E
Sbjct: 505 VAPNAQVYNSIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAE 564
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ + + G R D V N ++S+ + + + + LQ+M GI ++RT C
Sbjct: 565 ELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRT-------C 617
Query: 305 STIMSML 311
T++S L
Sbjct: 618 HTLVSAL 624
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G+ +A+ + E + GL P+ Y +I GY ++ L I QM+S
Sbjct: 340 LLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CS 305
R D + N +++ +++ + +M+ SG+ SV T+N+++++ C
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459
Query: 306 TIMSMLQ 312
T++S +Q
Sbjct: 460 TVLSDMQ 466
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + P GF Y + G R G + M + + G
Sbjct: 270 LLSGLCRTGRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKG 329
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++L+ ++++ + + +G+ + YN+++N
Sbjct: 330 VMLGAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLING 378
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G+ +A + +EM G+ P+ Y +I G+ + G LE R+ +QM DG
Sbjct: 200 VIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDG 259
Query: 255 TRVDTVCSNMVLSS 268
+ + V N++LS
Sbjct: 260 PKPNVVTYNVLLSG 273
>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ ++A+ L E + + G +L++F LID C + + D +A L
Sbjct: 407 LIYVLSKRGRMKQADDL-FEKIVRKGIFP-DLIMFNA-LIDGHCANGN---MDRAFAMLK 460
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ V +++ G C G+ A LIEEM+ +G++P Y +I GY +
Sbjct: 461 EM--DQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSK 518
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++D R+ ++M S G + N ++ + E L++M GI + T
Sbjct: 519 RGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNT 578
Query: 297 YNSVLNSCSTI 307
Y S++ +
Sbjct: 579 YLSLIEGIGNV 589
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ LC+ G+ +A+ I M G++P+ Y II+GY G +E I + M+ G
Sbjct: 197 MINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRG 256
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D+ +S +L L+KMK+ G+ + TYN++++
Sbjct: 257 VKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDG 305
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 96/213 (45%), Gaps = 20/213 (9%)
Query: 102 TEESWFQWNP----KLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLF 151
TE++W + ++ + ++ F L K+G+ ++A+ I + LG + V+
Sbjct: 172 TEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFI-GLMEALGIKPN--VVT 228
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I +C G AR+ + V S ISG+C+ G+ EA +
Sbjct: 229 YNTIIHGYCSRGRVEG-----ARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGM 283
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E+M+ GL P+ Y +I GY G LE ++M +G NM++ +
Sbjct: 284 LEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFL 343
Query: 272 HNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
++ +++M + G +P SV TYN ++N
Sbjct: 344 DCKMDEADGIIKEMSEKGLVPDSV-TYNILING 375
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/219 (20%), Positives = 91/219 (41%), Gaps = 33/219 (15%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS---------- 164
I+ + K+G+ EEA + LE + ++G R + Y LID +C +
Sbjct: 265 GSFISGMCKEGKLEEASGM-LEKMKEIGLRPTAVT--YNTLIDGYCNKGNLEMAFDYRDK 321
Query: 165 --KRGFDDTYARLNQLVNS--------SSSVYVKRQALKSM----------ISGLCEMGQ 204
+ G T + N L+++ + +K + K + I+G C G
Sbjct: 322 MVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGN 381
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A L +EM KG++P+ Y +IY + G ++ + + ++ G D + N
Sbjct: 382 VKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNA 441
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + + R L++M + T+N+++
Sbjct: 442 LIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQG 480
>gi|255539196|ref|XP_002510663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551364|gb|EEF52850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 695
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 66/122 (54%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + + L ++IS L + G+ EAE + EEM+ GL+P Y ++ GY + G+L+
Sbjct: 284 ASGLSPRTATLIAVISALGDSGRIIEAEAIFEEMKDNGLKPKTRAYNGLLKGYVKAGMLK 343
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D E IV++ME G D ++++ +Y + + L++M+ + I + ++ +L
Sbjct: 344 DAEFIVSEMERSGVSPDECTYSLLIDAYSNAGRWESARIVLKEMEANNIMPNSYVFSRIL 403
Query: 302 NS 303
S
Sbjct: 404 AS 405
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K DT+ ++ S + ++I C+ AE
Sbjct: 433 FYNVMIDTFGKFSCLDHAMDTFDKM-----LSEGIQPDTVTWNTLIDCHCKAELHERAEE 487
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EEM KG P + +I +G +D++ ++ M S G + V ++ YG
Sbjct: 488 LFEEMMEKGFSPCVTTFNIMINSFGEQERWDDVKTLMGNMRSLGLLPNVVTYTTLIDIYG 547
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S + L+ MK +G+ S YN+++N+
Sbjct: 548 KSGRFSDAIECLEDMKSAGLKPSSTMYNALINA 580
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 50/101 (49%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +A +E+M+ GL+PS Y +I Y + GL E M +D + +
Sbjct: 550 GRFSDAIECLEDMKSAGLKPSSTMYNALINAYAQKGLSEQAVNAFRLMRADSLKPSLLAL 609
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + L+ MK++ + V TY +++ +
Sbjct: 610 NSLINAFGEDRRDAEAFSVLKYMKENDLKPDVVTYTTLMKA 650
>gi|260780558|gb|ACX50825.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 176
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q P + +I L K+G+ E + E + + GS+ V Y LID + K +
Sbjct: 4 QVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKSGN--- 57
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D L+++++ V +++GLC+ G+ EA + + + GL + Y
Sbjct: 58 VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFY 115
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ + ++M++
Sbjct: 116 SSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEE 175
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 2 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 61
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 62 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|302784330|ref|XP_002973937.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
gi|300158269|gb|EFJ24892.1| hypothetical protein SELMODRAFT_100758 [Selaginella moellendorffii]
Length = 823
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 73/162 (45%), Gaps = 12/162 (7%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
+ VL YC C D ++ LNQL ++ S +K +MIS + G
Sbjct: 604 KTFVLAYCK-----CGMD-----NEAQLALNQLYDNGHSPDIK--VFNAMISMCAKRGWI 651
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A L+EE+R L+P G Y C++ YGR G+ E ++++M G + + N +
Sbjct: 652 ERAVKLLEEIRKAQLKPDGVTYNCLMSMYGREGMYYKAEEVMSEMRRAGKAPNLITYNTL 711
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
L SY H + M + + T+N+++ S S++
Sbjct: 712 LYSYTKHGRMDDAARVFGDMVAARVRPDNFTFNTLVGSYSSL 753
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 76 ALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135
A + +LS H +L + A L+ + ++ + + +I+ L + + +E TL
Sbjct: 179 ATASILSVLGNHEQLPA-ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITL-F 236
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ--ALK 193
ET+ + G R + Y ++D + KRG D++ R+ L + +
Sbjct: 237 ETMQREGQRGNAVT--YNVMLDLY----GKRG--DSWDRIQSLFQEMKDLEISPDDYTYN 288
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI+ + EA L +EM+ G P+ Y ++ YG+ G+ ++ ++ +ME+
Sbjct: 289 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 348
Query: 254 GTRVDTVCSNMVLSSYG 270
G + V N ++++Y
Sbjct: 349 GISPNIVTYNELIAAYA 365
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G ++AE ++ EMR G P+ Y ++Y Y + G ++D R+ M + R D
Sbjct: 684 GMYYKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTF 743
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++ SY + ++ M + G + T+ ++L+
Sbjct: 744 NTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 784
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++IS + +A EMR P+ Y +I YGR+ L+DM ++ M+
Sbjct: 394 TLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEK 453
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V N +L S+G+ L+ + ++MK +G V T+N +L C
Sbjct: 454 NCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFN-ILIEC 503
>gi|242076206|ref|XP_002448039.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
gi|241939222|gb|EES12367.1| hypothetical protein SORBIDRAFT_06g020090 [Sorghum bicolor]
Length = 481
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 32/217 (14%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS---------- 164
A +I+ K G+ E+A + E L++ G V+ Y LI +C
Sbjct: 187 ATLISGWCKIGRMEDAAKVFDEMLTQ-GEVAPSAVM-YNALIGGYCDRGKLDVALQYRED 244
Query: 165 --KRGFDDTYARLNQLVNS------SSSVY-----VKRQALKS-------MISGLCEMGQ 204
+RG T A N LV++ +S Y ++R L +I+G C+ G
Sbjct: 245 MVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILINGYCKEGN 304
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + EEM KG+ + Y +IY + R G +++ +R+ G R D V N
Sbjct: 305 EKKALEVFEEMSRKGVRATAVTYTSLIYAFSRKGQVQETDRLFKVAVKKGIRPDVVMYNA 364
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++S+ ++ R + +M+ IP TYN+++
Sbjct: 365 LINSHCAGGDMERAFEIMAEMEKKRIPPDDVTYNTLI 401
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 84/178 (47%), Gaps = 16/178 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ A ++ EMR + G+ P + Y +I G+ ++G +ED ++ ++M +
Sbjct: 152 TVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAAKVFDEMLT 211
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CS 305
G V N ++ Y D +L + + + M G+ +V TYN ++++ S
Sbjct: 212 QGEVAPSAVMYNALIGGYCDRGKLDVALQYREDMVQRGVAMTVATYNLLVHALFMDGRAS 271
Query: 306 TIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
++L+++ N + ++N ++ + V +E+ V A+ + S
Sbjct: 272 DAYAVLEEMQRNGLSPDVFTYNILINGYCKEGNEKKALEVFEEMSRKGVRATAVTYTS 329
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 69/158 (43%), Gaps = 12/158 (7%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI +CK D+ + FD+ + V S+ +Y ++I G C+ G+
Sbjct: 186 YATLISGWCKIGRMEDAAKVFDEMLTQGE--VAPSAVMY------NALIGGYCDRGKLDV 237
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A E+M +G+ + Y +++ G D ++ +M+ +G D N++++
Sbjct: 238 ALQYREDMVQRGVAMTVATYNLLVHALFMDGRASDAYAVLEEMQRNGLSPDVFTYNILIN 297
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y + + ++M G+ + TY S++ + S
Sbjct: 298 GYCKEGNEKKALEVFEEMSRKGVRATAVTYTSLIYAFS 335
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARL 175
I AF ++GQ +E + L + K G R V+ Y LI+S C D +R F+
Sbjct: 331 IYAF-SRKGQVQETDRLFKVAVKK-GIRPD--VVMYNALINSHCAGGDMERAFEIMAEME 386
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ + Y ++I G C +G+ EA LI+EM +G++P G
Sbjct: 387 KKRIPPDDVTY------NTLIRGFCLLGRLDEARGLIDEMTKRGIQPD--------LGLC 432
Query: 236 RLGLLEDMERIVNQMESDGTRVD 258
+ G +D E ++ +M G D
Sbjct: 433 KNGQGDDAENLMKEMVGKGITPD 455
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A +LE + K G L Y L+ +FCK ++ D A +
Sbjct: 92 LISFLCRRGLVEPAME-VLEQIPKYGCTPNSLS--YNPLLHAFCK---QKKMDKAMAFVE 145
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S Y + ++++ LC G+ A +L+ +++ KG P Y +I G +
Sbjct: 146 LMV--SRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTK 203
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ ++++M S G + D + + S +++ + K++D GI +V
Sbjct: 204 AGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVL 263
Query: 297 YNSVL 301
YN++L
Sbjct: 264 YNAIL 268
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 50/98 (51%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+AE L+EEM KG P+ + +I R GL+E ++ Q+ G +++ N +
Sbjct: 68 EDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPL 127
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L ++ ++ + + +++ M G + +YN++L +
Sbjct: 128 LHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTA 165
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 5/149 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+ + C++ D L+QL S + + ++I GL + G+ EA
Sbjct: 156 IVSYNTLLTALCRNGE---VDVAIDLLHQLKGKGCSPVL--ISYNTVIDGLTKAGKTKEA 210
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++EM KGL+P Y I G R +E+ R +++ G R V N +L
Sbjct: 211 LELLDEMISKGLQPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLG 270
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
E + M +G + TY
Sbjct: 271 LCKRRETHNAIDLFSYMISNGCMPNESTY 299
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++G+C+ G+ +A +E + G EP+ Y ++ G ED E+++ +M G
Sbjct: 22 VLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKG 81
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V NM++S + + L+++ G + +YN +L++
Sbjct: 82 CPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHA 130
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 19/221 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++CK D+ + L + SS + + +I+GLC G EA
Sbjct: 249 VVTYNTLIDAYCKMGR---IDEAFGLLKSM--SSKGMQPNLISYNVIINGLCREGSMKEA 303
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++EEM KG P Y ++ GY + G I +M +G V +++S
Sbjct: 304 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 363
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLS 322
L+R + + +M+ G+ + RTY ++++ S +L ++ + F S
Sbjct: 364 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 423
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
++ ++ EE + VV+E+ + + + + + +
Sbjct: 424 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 111 PKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L++ II L ++G +EA ILE + G E+ Y L++ +CK + F
Sbjct: 282 PNLISYNVIINGLCREGSMKEAWE-ILEEMGYKGFTPDEVT--YNTLLNGYCKEGN---F 335
Query: 169 DDTYARLNQLV-NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
++V N S V AL I+ +C+ + A ++MR++GL P+ Y
Sbjct: 336 HQALVIHAEMVRNGVSPSVVTYTAL---INSMCKARNLNRAMEFFDQMRIRGLRPNERTY 392
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G+ R GLL + RI+N+M G V N + + + + +Q+M +
Sbjct: 393 TTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVE 452
Query: 288 SGIPFSVRTYNSVLNS 303
G+ V +Y+++++
Sbjct: 453 KGLAPDVVSYSTIISG 468
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID F S++G ++ Y LN++ S S V + I G C + + EA
Sbjct: 392 YTTLIDGF----SRQGLLNEAYRILNEMTESGFSPSV--VTYNAFIHGHCVLERMEEALG 445
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+++EM KGL P Y II G+ R G L+ ++ +M G D V + ++
Sbjct: 446 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 505
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ Q+M D G+P TY +++N+
Sbjct: 506 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 538
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+S CK R + +Q+ + + ++I G G +EA
Sbjct: 354 VVTYTALINSMCK---ARNLNRAMEFFDQM--RIRGLRPNERTYTTLIDGFSRQGLLNEA 408
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM G PS Y I+G+ L +E+ +V +M G D V + ++S
Sbjct: 409 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 468
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ EL R Q+M + G+ TY+S++
Sbjct: 469 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 501
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 149 VLFYCNLIDSFC-KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +I FC K + R F + + V+ + Y S+I GLCEM + E
Sbjct: 459 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY------SSLIQGLCEMRRLTE 512
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +L +EM GL P F Y +I Y G L + ++M G D V +++++
Sbjct: 513 ACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 572
Query: 268 SYGDH---NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E R++ L + + +P V TY++++ +CS I
Sbjct: 573 GLNKQARTREAKRLLFKL--IYEESVPSDV-TYDTLIENCSNI 612
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G C+ G+ H+A ++EEM+ K ++P+ Y I+ G ++ L++ + +
Sbjct: 465 RAYNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEE 524
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ V + ++ +G + L L++M G+ +V T+NS+L++
Sbjct: 525 AKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDA 578
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 109/270 (40%), Gaps = 32/270 (11%)
Query: 44 SSLALAVTR----DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM 99
+ LA A+ R D + + + + P F A L L+ R L +
Sbjct: 14 ADLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALAEARRPERALEL-----L 68
Query: 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159
R +E ++ L ++ L ++GQ +A L+ E K E ++VL Y ID F
Sbjct: 69 RQMQEVGYEVGVHLFTTLVRALAREGQVADALALVDEV--KGSCLEPDIVL-YNVCIDCF 125
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK-------SMISGLCEMGQPHEAENLI 212
K G D + +K Q LK SMI LC+ G+ EAE L
Sbjct: 126 ----GKAGNVDMACKFFH--------ELKAQGLKPDDVSYTSMIWVLCKAGRLGEAEELF 173
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+M + P + Y +I GYG G ED +++ ++ G V N +L+ G
Sbjct: 174 AQMEAERSVPCAYAYNTMIMGYGSAGRFEDAYKLLERLRERGCIPSVVSFNSILTCLGKK 233
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ + + MK P S TYN +++
Sbjct: 234 RKVDEALSLFEVMKKDAEPNS-STYNIIID 262
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 95/212 (44%), Gaps = 15/212 (7%)
Query: 152 YCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y ++D FCK + ++ + V + + Y +++ GL ++ + EA
Sbjct: 467 YNAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATY------GAIVDGLAKIDRLDEAYM 520
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EE + KG+E + Y +I G+G++G +++ I+ +M G + N +L +
Sbjct: 521 LFEEAKSKGIELNVVLYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLLDALV 580
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSIL 324
E++ ++ Q MK+ P + TY+ ++N + QD+ +++
Sbjct: 581 KAEEINEALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVV 640
Query: 325 ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSG 356
T +++ ++ V + D+ L E K + G
Sbjct: 641 TYTTMIS--GLAKVGNITDAYSLFERFKANGG 670
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP V +I L K+GQ +EA L E + G +V Y +LI +F H K
Sbjct: 321 NPDCVTYCSLIDGLGKKGQVDEAYRL-FEKMLDAGHNANPVV--YTSLIRNFFIHGRK-- 375
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D + +L+ + L + + + + G+ + + E++R G P Y
Sbjct: 376 -EDGHKVFKELIRRGCKPDL--TLLNTYMDCVFKAGEVEKGRMIFEDIRSYGFLPDVRSY 432
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I+G + G + I + M+ G +D N V+ + ++ + L++MK+
Sbjct: 433 SILIHGLTKAGQARETSNIFHAMKQQGFALDARAYNAVVDGFCKSGKVHKAYEILEEMKE 492
Query: 288 SGIPFSVRTYNSVLNSCSTI 307
+ +V TY ++++ + I
Sbjct: 493 KCVQPTVATYGAIVDGLAKI 512
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 22/198 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKHD-----------------S 164
K+G++ EAE E L K+ + +L CN++ + C++ +
Sbjct: 445 KEGRKSEAE----EMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTN 500
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
G ++ A L +++ S+ ++I+GLC++G+ EA+ EM K L P
Sbjct: 501 SLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDS 560
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y + + + G + R++ ME +G N ++ G ++ M + +
Sbjct: 561 VTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDE 620
Query: 285 MKDSGIPFSVRTYNSVLN 302
M++ GI + TYN+++N
Sbjct: 621 MRERGIHPDICTYNNMIN 638
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+V ++ + + GL G+ E ++++EM G+EP+ + Y ++ G R ++ D R
Sbjct: 325 FVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARR 384
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC- 304
+++ M S+G DTV +L Y ++ L +M G + T N++LNS
Sbjct: 385 LMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLW 444
Query: 305 -----STIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETK 359
S MLQ +N + L + V+N + ELE +S + M W G
Sbjct: 445 KEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVN--GLCRNGELEKASEVVSEM-WTDGTNS 501
Query: 360 L 360
L
Sbjct: 502 L 502
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 4/129 (3%)
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V+ V R +++S C+ EAE L+E M KGL P + I R
Sbjct: 207 EFVDGKMGGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCR 266
Query: 237 LGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + + RI M+ DG + + V N++L + + ++ MK G
Sbjct: 267 AGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFV 326
Query: 293 SVRTYNSVL 301
S+ +YN+ L
Sbjct: 327 SLESYNTWL 335
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S+ VY +++ G C G+ EA+ ++ EM KG P+ + ++ + G
Sbjct: 391 SNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKS 450
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ E ++ +M ++DTV N+V++ + EL +
Sbjct: 451 EAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEK 486
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED-MERIVNQMESD 253
+I LCE A L ++M KG +P+ F ++ G+ R G + +E + +M
Sbjct: 157 LIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEFVDGKM--- 213
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G V+ V N ++SS+ + +++M + G+ V T+NS +++
Sbjct: 214 GGNVNRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISA 263
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 63/114 (55%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A ++I G C+ G+ ++A L+EEM+ KG EP+ Y +I G ++ L++ + +
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ V + ++ +G + L ++++ G+ +V T+N +L++
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 733
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 11/230 (4%)
Query: 73 ALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132
A +A ++L+ +T R S L+ ++ +E + N L +I ++G+ + A +
Sbjct: 199 AFSAYTNLIGALST-SRDSDCMLTLFQQM-QELGYAVNVHLFTTLIRVFAREGRVDAALS 256
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192
L+ E K S E ++VL Y ID F K D + +++ ++ + +
Sbjct: 257 LLDEM--KSNSLEPDVVL-YNVCIDCFGKAGK---VDMAWKXFHEM--KANGLVLDDVTY 308
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
SMI LC+ + +EA L E M P + Y +I GYG G ED ++ +
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G V N +LS G ++ + ++MK IP ++ TYN +++
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMID 417
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 622 YNTVIDGFCKSGK---VNKAYQLLEEMKTKGHEPTVVTYG--SVIDGLAKIDRLDEAYML 676
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + KG+E + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E+S ++ Q MKD + TY+ +++ I
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EA L + L + + + Y +LI +F K K Y +
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLD---ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+L S + L + + + + G+ + L +E++ G P Y +I+G +
Sbjct: 542 RLGCSPDLLL-----LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N V+ + ++++ L++MK G +V T
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 657 YGSVIDGLAKI 667
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC++ + ++A +EM+ +G +P+ F Y +I G + G + + + + + + G
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ N ++ + N S ++ + G +T +L+S
Sbjct: 825 GVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDS 873
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GL G+ EA L E+M P+ Y +I + + G ED +I N+M
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL 543
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + N + E+ + Q++K+ G R+Y +++
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593
>gi|449450760|ref|XP_004143130.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
gi|449496662|ref|XP_004160192.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g59600-like [Cucumis sativus]
Length = 547
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 64/117 (54%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
AL +M+SG G EA NL+EEM+V G++P+ + ++ G+ ++G E + + +M
Sbjct: 197 ALNAMVSGYAHHGLAEEALNLVEEMQVLGIKPNLVTWNTLVTGFSQIGEEEMVRELFKEM 256
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E++G D V V+S + + ++M ++G + T +S+L +C+++
Sbjct: 257 EANGIEPDVVSWTSVISGFVQNFRNEEAFDTFRRMLNAGFHPTSATISSLLPACASV 313
>gi|222622462|gb|EEE56594.1| hypothetical protein OsJ_05954 [Oryza sativa Japonica Group]
Length = 579
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ S L ++ Q NL ++M+ G+ P F Y +I YGR+GL++ + ME+
Sbjct: 376 VFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS 435
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ D V N +++ G H +L + ++M++ G V TY S+L C
Sbjct: 436 CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTY-SILIEC 484
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + G EA L +EM+ KG +P F Y +I +G+ +E + ++M S+
Sbjct: 445 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISE 504
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYN 298
G + V N++L + + MK G IP S+ TY+
Sbjct: 505 GCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSI-TYS 549
>gi|147859909|emb|CAN83144.1| hypothetical protein VITISV_040783 [Vitis vinifera]
Length = 724
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
K L ++I+ L G+ EAE + EE++ GL P Y ++ GY + G L+D E IV
Sbjct: 361 KTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIV 420
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ME G D ++++ +Y + + L++M+ SG+ + ++ +L S
Sbjct: 421 SEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS 476
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+ +A +++ G + G +AE+++ EM G P Y +I Y G E ++
Sbjct: 396 RTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVL 455
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ME+ G R ++ + +L+SY D + + L++M++SG+ YN ++++
Sbjct: 456 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDT 511
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 124/313 (39%), Gaps = 59/313 (18%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-------- 164
LVA I A L G+ EEAE I E L + G R Y L+ + K S
Sbjct: 365 LVAVITA-LGNAGRTEEAEA-IFEELKEGGLMPRTRA--YNALLKGYVKTGSLKDAESIV 420
Query: 165 ----KRGFD----------DTYARLNQLVNS--------SSSVYVKRQALKSMISGLCEM 202
+ GF D YA + ++ +S V +++ +
Sbjct: 421 SEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILASYRDR 480
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++ ++ EMR G+ P Y +I +G+ L+ ++M +G + D V
Sbjct: 481 GKWQKSFQVLREMRNSGVSPDRHFYNVMIDTFGKCNCLDHALATFDRMRMEGVQPDAVTW 540
Query: 263 NMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------CSTIMSM 310
N ++ + G HN+ + + M++SG TYN ++NS T++
Sbjct: 541 NTLIDCHCKSGHHNKAEEL---FEAMQESGCSPCTTTYNIMINSFGEQERWEDVKTLLGK 597
Query: 311 LQD--LNSNDFPLSILELTE-VLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHL 367
+Q L +N + L L+E +N V L+ S ++ ++ GE + D
Sbjct: 598 MQSQGLLANVVTYTTLGLSEQAINAFRVMRADGLKPSVLVLNSLINAFGEDRRDAEA--- 654
Query: 368 GSAYFIILQWMDE 380
F +LQ+M E
Sbjct: 655 ----FSVLQYMKE 663
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+D CK+ R D+ A L + S+ + Q +I G+C G+ A +L
Sbjct: 421 YCILLDYLCKN---RRLDEAIALLKAIEGSNMDPDI--QIYTIVIDGMCRAGELEAARDL 475
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ KGL P+ + Y +I G + GLL + ++ +M+ G + N++ +
Sbjct: 476 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 535
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRT 296
+NE R + LQ+M G V T
Sbjct: 536 NNETLRGIQLLQEMLARGFSADVST 560
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 15/259 (5%)
Query: 47 ALAVTRDSKAASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
+L R A L S+ + SP N+L H L +++L +
Sbjct: 217 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL-----LNEMVN 271
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S N + + ++ L K+G+ EA ++ + + K G V+ Y L+D C
Sbjct: 272 SKIMPNVVIFSTVVDALCKEGKVMEAHDVV-DMMIKRGVEPN--VVTYNALMDGHCL--- 325
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ D+ + +V + V + ++I+G C++ + +A L EEM K L P+
Sbjct: 326 RSEMDEAVKVFDTMVCKGFAPDVV--SYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNT 383
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +++G +G L+D + ++M + G D V ++L + L + L+
Sbjct: 384 VTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKA 443
Query: 285 MKDSGIPFSVRTYNSVLNS 303
++ S + ++ Y V++
Sbjct: 444 IEGSNMDPDIQIYTIVIDG 462
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK S + Q N V V S+I LC+ Q +A
Sbjct: 173 VVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GNCQPDVVV----YTSIIDSLCKDRQVTQA 227
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL EM +G+ PS F Y +I+ L + + ++N+M + + V + V+ +
Sbjct: 228 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 287
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M G+ +V TYN++++
Sbjct: 288 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 322
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ FCK D + + + V S + ++++GLC++G A +++
Sbjct: 279 LINGFCKQGR---IDQALSFIQEAV--SEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDA 333
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M + GL+P + Y +I G +LG +E+ +I++QM S + V N ++SS N
Sbjct: 334 MLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENR 393
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + GI V T+NS++
Sbjct: 394 VDEATEIARLLTSKGILPDVCTFNSLIQG 422
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 79/171 (46%), Gaps = 9/171 (5%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQAL 192
+ E + G R E Y LIDS C S R ++ L ++ +N + V
Sbjct: 435 LFEEMKGKGCRPDEFT--YNMLIDSLC---SSRKLEEALNLLKEMELNGCARNVV---IY 486
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I G C+ + EAE + +EM ++G+ Y +I G + +ED ++++QM
Sbjct: 487 NTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIM 546
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G R D N +L+ + ++ + +Q M SG + TY ++++
Sbjct: 547 EGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISG 597
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ L K G+ EEA ++ + +S+ S + Y +I S CK + D +
Sbjct: 349 LISGLCKLGEIEEAVKILDQMVSRDCSPN---AVTYNAIISSLCKENRV----DEATEIA 401
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+L+ +S + S+I GLC A +L EEM+ KG P F Y +I
Sbjct: 402 RLL-TSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS 460
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LE+ ++ +ME +G + V N ++ + + + +M+ G+ T
Sbjct: 461 SRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVT 520
Query: 297 YNSVLNS 303
YN++++
Sbjct: 521 YNTLIDG 527
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 177 QLVNSSSSVYVKRQ------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+LV S+ S V+R+ +I LC+ Q A ++EEM GL P + I
Sbjct: 185 KLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTI 244
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ GY G L+ RI QM G V N++++ + + + + ++Q+ G
Sbjct: 245 MQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGF 304
Query: 291 PFSVRTYNSVLNSCSTI 307
TYN+++N I
Sbjct: 305 RPDQFTYNTLVNGLCKI 321
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 63/114 (55%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A ++I G C+ G+ ++A L+EEM+ KG EP+ Y +I G ++ L++ + +
Sbjct: 620 RAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 679
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ V + ++ +G + L ++++ G+ +V T+N +L++
Sbjct: 680 AKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 733
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 11/230 (4%)
Query: 73 ALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132
A +A ++L+ +T R S L+ ++ +E + N L +I ++G+ + A +
Sbjct: 199 AFSAYTNLIGALST-SRDSDCMLTLFQQM-QELGYAVNVHLFTTLIRVFAREGRVDAALS 256
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192
L+ E K S E ++VL Y ID F K D + +++ ++ + +
Sbjct: 257 LLDEM--KSNSLEPDVVL-YNVCIDCFGKAGK---VDMAWKFFHEM--KANGLVLDDVTY 308
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
SMI LC+ + +EA L E M P + Y +I GYG G ED ++ +
Sbjct: 309 TSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLLERQRR 368
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G V N +LS G ++ + ++MK IP ++ TYN +++
Sbjct: 369 KGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIP-NLSTYNIMID 417
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 622 YNTVIDGFCKSGK---VNKAYQLLEEMKTKGHEPTVVTYG--SVIDGLAKIDRLDEAYML 676
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + KG+E + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 677 FEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 736
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E+S ++ Q MKD + TY+ +++ I
Sbjct: 737 AEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKI 772
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L + G+ +EA L + L + + + Y +LI +F K K Y +
Sbjct: 485 LIEGLGRHGRVDEAYKLYEQMLD---ANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEML 541
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+L S + L + + + + G+ + L +E++ G P Y +I+G +
Sbjct: 542 RLGCSPDLLL-----LNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVK 596
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N V+ + ++++ L++MK G +V T
Sbjct: 597 AGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVT 656
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 657 YGSVIDGLAKI 667
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC++ + ++A +EM+ +G +P+ F Y +I G + G + + + + + + G
Sbjct: 765 LIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKG 824
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ N ++ + N S ++ + G +T +L+S
Sbjct: 825 GVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDS 873
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GL G+ EA L E+M P+ Y +I + + G ED +I N+M
Sbjct: 484 SLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRL 543
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + N + E+ + Q++K+ G R+Y +++
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHG 593
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 94/200 (47%), Gaps = 23/200 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKH-------DSKRG-FDDTYA 173
+ G+ EAE L L ++ + L CN+I D C++ D G +++
Sbjct: 433 RAGRTTEAERL----LERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSG 488
Query: 174 RLNQLVNSSSSVY----VKRQALKS------MISGLCEMGQPHEAENLIEEMRVKGLEPS 223
L +L NS SV + ++ L +IS LC+ G+ EA+ + EM VK + P
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVKDISPD 548
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I+GY + G +++ ME G T N+++ + + ++ ++ +
Sbjct: 549 SVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMS 608
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+MK+ GI +V TYNS++ S
Sbjct: 609 EMKEKGISPNVMTYNSLIKS 628
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 101/256 (39%), Gaps = 16/256 (6%)
Query: 59 RLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL---------AFPLYMRITEESWFQW 109
R I F SP +AL + S +L P SL P+Y R+ + +
Sbjct: 65 RHILSFPDPSPHLLALLSCSDVLPLRLAIPAFRSLRALTSAPPPTTPVYNRLILAALRES 124
Query: 110 NPKLVAEIIAFLDKQGQREEAET--LILETLSKLGSRERELVLFYCNLI-DSFCKHDSKR 166
LV + L G + + T L+L+ L G E +F + F R
Sbjct: 125 RLDLVEALYKDLLLSGAQPDVFTRNLLLQALCDAGRMELAQRVFDAMPARNEFSFGILAR 184
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
G+ ++ L + ++++G C+ G EAE L+E MRV+GL P+
Sbjct: 185 GYCRAGRSIDALKVLDGMPSMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVT 244
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ I + G + D RI M+ D R D V +++LS + D + + +
Sbjct: 245 FNARISALCKAGRVLDAYRIFQDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLV 304
Query: 283 QKMKDSGIPFSVRTYN 298
M+ G V +YN
Sbjct: 305 DIMRCGGFLRRVESYN 320
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 51/108 (47%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+SGL G+ EA+ L+ EM +G++P+ + Y I+ G + G D R+ N + S
Sbjct: 323 LSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGVM 382
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V +L +Y ++ L +M G + TYN +L S
Sbjct: 383 SPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQS 430
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ C G A +++EM KG P+ F Y ++ R G + ER++ +M
Sbjct: 391 SLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEK 450
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G +DT N+++ ++ L + + M + G R NS L+ S
Sbjct: 451 GYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSGALGRLGNSFLSVVS 502
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/173 (19%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLV----NSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI + CK FD+ +L +++ + S +Y + I G C+ G+
Sbjct: 517 YSILISALCKEGR---FDEAKKKLLEMIVKDISPDSVIY------DTFIHGYCKHGKTSL 567
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ +M KG PS Y +I G+ E++ +++++M+ G + + N ++
Sbjct: 568 AIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLMSEMKEKGISPNVMTYNSLIK 627
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFP 320
S+ +++ + L +M + + ++ +++ ++ + I DFP
Sbjct: 628 SFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKAYCKI---------TDFP 671
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC+ G+ +A + +R + P Y +++ Y G + RI+++M G
Sbjct: 357 IVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG 416
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ N++L S + L++M + G N +++
Sbjct: 417 CAPNSFTYNVLLQSLWRAGRTTEAERLLERMNEKGYSLDTAGCNIIIDG 465
>gi|218190347|gb|EEC72774.1| hypothetical protein OsI_06434 [Oryza sativa Indica Group]
Length = 579
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ S L ++ Q NL ++M+ G+ P F Y +I YGR+GL++ + ME+
Sbjct: 376 VFSALGKLKQVSFISNLFDKMKTNGIIPDVFTYNIMISSYGRVGLVDKASELFEVMEASS 435
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ D V N +++ G H +L + ++M++ G V TY S+L C
Sbjct: 436 CKPDVVTYNSLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTY-SILIEC 484
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 2/106 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + G EA L +EM+ KG +P F Y +I +G+ +E + ++M S+
Sbjct: 445 SLINCLGKHGDLDEAHMLFKEMQEKGYDPDVFTYSILIECFGKSNKVEMACSLFDEMISE 504
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYN 298
G + V N++L + + MK G IP S+ TY+
Sbjct: 505 GCTPNIVTYNILLDCLERRGKTEEAHKLYETMKQQGLIPDSI-TYS 549
>gi|359482557|ref|XP_002277683.2| PREDICTED: pentatricopeptide repeat-containing protein At5g39710
[Vitis vinifera]
Length = 990
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + A ++ L K G EA L S +R+ Y ++++S C
Sbjct: 213 NKSIYAYLVRTLSKLGHASEAHRLFCNMWSFHDEGDRDA---YMSMLESLCDAGKTTEAL 269
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D +++++ S+ +V +++S L ++ + + +L E+M+ G P F Y
Sbjct: 270 DLLSKIHEKRISTDTV-----MYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIFSYNI 324
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I +GR G +E+ +I ++E+ + D + N +++ G + ++ + ++M++ G
Sbjct: 325 LISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEMREEG 384
Query: 290 IPFSVRTYNSVL 301
+ V TY++++
Sbjct: 385 LSPDVVTYSTLI 396
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R A SM+ LC+ G+ EA +L+ ++ K + Y ++ G+L D+ +
Sbjct: 249 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 308
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+M+ DG D N+++SS+G + V +++++S + ++NS++N
Sbjct: 309 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLIN 362
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S+I+ L + G EA +EMR +GL P Y +I +G+ +E R+ ++M
Sbjct: 356 SFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 415
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++G + V N++L + V K+K G+ TY
Sbjct: 416 LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 462
>gi|341606817|gb|AEK83511.1| pentatricopeptide repeat superfamily protein [Capsella rubella]
Length = 208
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E + E + + GS+ V Y LID + K
Sbjct: 6 DEKGIQVPPHXFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKS 62
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+D L+++++ V ++ +++GLC+ G+ EA + + GL
Sbjct: 63 GX---VEDAIRLLHRMIDEGFKPDVVTXSV--VVNGLCKNGRVEEALDYFQTCXFNGLAI 117
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ + H ++ +
Sbjct: 118 NSMFYSSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAXTKHGKVDEAMTLF 177
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G V TY +++
Sbjct: 178 KRMEEEEGCDQXVYTYTILISG 199
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 5/145 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+D CK+ R D+ A L + S+ + Q +I G+C G+ A +L
Sbjct: 412 YCILLDYLCKN---RRLDEAIALLKAIEGSNMDPDI--QIYTIVIDGMCRAGELEAARDL 466
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ KGL P+ + Y +I G + GLL + ++ +M+ G + N++ +
Sbjct: 467 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 526
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRT 296
+NE R + LQ+M G V T
Sbjct: 527 NNETLRGIQLLQEMLARGFSADVST 551
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 110/259 (42%), Gaps = 15/259 (5%)
Query: 47 ALAVTRDSKAASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
+L R A L S+ + SP N+L H L +++L +
Sbjct: 208 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL-----LNEMVN 262
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S N + + ++ L K+G+ EA ++ + + K G V+ Y L+D C
Sbjct: 263 SKIMPNVVIFSTVVDALCKEGKVMEAHDVV-DMMIKRGVEPN--VVTYNALMDGHCL--- 316
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ D+ + +V + V + ++I+G C++ + +A L EEM K L P+
Sbjct: 317 RSEMDEAVKVFDTMVCKGFAPDVV--SYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNT 374
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +++G +G L+D + ++M + G D V ++L + L + L+
Sbjct: 375 VTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKA 434
Query: 285 MKDSGIPFSVRTYNSVLNS 303
++ S + ++ Y V++
Sbjct: 435 IEGSNMDPDIQIYTIVIDG 453
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK S + Q N V V S+I LC+ Q +A
Sbjct: 164 VVTYGTLINGLCKVGSTSAAIRLLRSMEQ-GNCQPDVVV----YTSIIDSLCKDRQVTQA 218
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL EM +G+ PS F Y +I+ L + + ++N+M + + V + V+ +
Sbjct: 219 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 278
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M G+ +V TYN++++
Sbjct: 279 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 313
>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Brachypodium distachyon]
Length = 841
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A + ISGLC + +EA EM +G P+ Y +I + R+G + + ++ +M
Sbjct: 527 AFSAYISGLCRLDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKM 586
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D SN+++ + L M M +SG+ V TYN+++N+
Sbjct: 587 RQSGLIPDVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINA 639
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G GQ +A L++EMR G +P+ Y ++ G + D R+ ++M G
Sbjct: 251 LIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVG 310
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+T+ N+++ Y + ++MK G+ T+N
Sbjct: 311 IEANTITFNVLVDGYAKAGRMDEAYAACREMKARGLVPDCCTFN 354
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 69/165 (41%), Gaps = 21/165 (12%)
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALK------------------SMISGLCEMGQP 205
+ RGF N L+++ V +ALK +I G C+ G+
Sbjct: 552 TGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNILIDGFCKEGRL 611
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+M GL P Y II Y + +N+M +DG D N+
Sbjct: 612 DMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADGCEPDIFTYNIW 671
Query: 266 LSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS-CSTIM 308
+ S +++ L+R V L ++ G +P SV TYN++++ CS ++
Sbjct: 672 MHSLCNNHLLNRAVKMLDELVAMGCMPNSV-TYNTLMDGICSDVL 715
>gi|125579703|gb|EAZ20849.1| hypothetical protein OsJ_36487 [Oryza sativa Japonica Group]
Length = 607
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
C L++S+ + R + + ++ +L + S++VY ++I+ G A
Sbjct: 157 CALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVY------NALIAASVRAGAVDTAYLR 210
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME +G R + M++ + +
Sbjct: 211 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L KMK+ G+ S TY ++++
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 69/149 (46%), Gaps = 14/149 (9%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVN----SSSSVYVKRQALKSMISGL--------- 199
C L+DSF K+ GFD + L+N S ++ Y+ LK ++S +
Sbjct: 383 CELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDC 442
Query: 200 -CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G +AE +++EM+ KG P+ + +I GY +LG + + + ++ + G D
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 502
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+ ++ + ++L + ++M +
Sbjct: 503 IITFTSLIDGLCNTHQLDDAFVCFEEMAE 531
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 93/212 (43%), Gaps = 26/212 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI FC+ K+ + Y L ++ V VY +++SGLC+ G +
Sbjct: 385 YNILIGGFCR---KKKLHEAYELLEEMKGVGLQPDVYT----YNTLLSGLCKAGDFSAVD 437
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ M G +PS + +++GY + G ++ RI M+ + +TV N ++
Sbjct: 438 ELLGHMIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLIDFL 497
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEV 329
E+ + +M++ +P +V TYN++L LQD + EL +
Sbjct: 498 CKSREVDVAIKLFDEMREKNVPANVTTYNALLKG-------LQDKKMAE---KAFELMDR 547
Query: 330 LNEEEVSVVKELEDSSVLDEAMKW--DSGETK 359
+ EE + + +D M+W + GET+
Sbjct: 548 MREERCT-----PNYVTVDVLMEWLPEIGETE 574
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 53/113 (46%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +I G C + HEA L+EEM+ GL+P + Y ++ G + G ++ ++
Sbjct: 383 KAYNILIGGFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGH 442
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M DG + V ++ Y + + + M ++ I + YN++++
Sbjct: 443 MIDDGCQPSVVTFGTLVHGYCKAGKTDEALRIFRSMDEARIQPNTVIYNTLID 495
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++ CK D L+++ + S V L +++ GLC++G+ +A
Sbjct: 166 VVTYGILLNGLCKSGH---VGDALKVLDRMSSPGSDVCPDIAILNTVVDGLCKIGRLQQA 222
Query: 209 ENLIEE-MR-VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
++E MR V G P+ Y C+ + R+G + +IV +ME +G + + N ++
Sbjct: 223 IIFVDERMRHVHGCAPNAVTYNCLADAFCRVGDIGMACKIVARMEKEGVAPNVITMNTII 282
Query: 267 SS 268
Sbjct: 283 GG 284
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EM G P Y +I G + G L D M+ G ++D N+++
Sbjct: 331 AMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKKAGFKLDAKAYNILIG 390
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L L++MK G+ V TYN++L+
Sbjct: 391 GFCRKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSG 426
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A IL+ + K G L Y ++ +FCK ++ D A +
Sbjct: 298 LISFLCRRGLVEPAME-ILDQIPKYGCTPNSL--SYNPILHAFCK---QKKMDRAMAFVE 351
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V SS Y + ++++ LC G+ A L+ +++ KG P Y +I G +
Sbjct: 352 LMV--SSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 409
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G E+ ++N+M + G + D + + + S + + K++D GI +
Sbjct: 410 AGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVL 469
Query: 297 YNSVL 301
YN++L
Sbjct: 470 YNAIL 474
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E I++Q+ G
Sbjct: 263 VLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYG 322
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ R + +++ M SG + +YN++L +
Sbjct: 323 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTA 371
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+M++G C GQ A L+ M +EP + Y +I G G ++ +++ M
Sbjct: 125 AMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRR 181
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V ++L + + + V L +M+D G + TYN V+N
Sbjct: 182 GCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNG 231
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A +++++ G P+ Y I++ + + ++ V M S G
Sbjct: 298 LISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSG 357
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 358 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 406
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+++ CK + G+ L+++ + + + +++G+C+ G+ +A
Sbjct: 187 VVTYTILLEATCK---RSGYKQAVKLLDEMRDKGCAPDI--VTYNVVVNGICQEGRVDDA 241
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ + G EP+ Y ++ G ED E+++ +M G + V NM++S
Sbjct: 242 MEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISF 301
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L ++ G + +YN +L++
Sbjct: 302 LCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHA 336
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 87/186 (46%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSK----RGFDDTYARLNQ 177
K + EE E L L++L S++ EL + Y +LI ++C + + R DD +R
Sbjct: 618 KANKVEEGENL----LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSR--- 670
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
V + S++ GLC +G +A++L++EMR +GL P+ Y II GY +L
Sbjct: 671 ------GVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKL 724
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G + + ++ +M S + +++ + + L +M + GI TY
Sbjct: 725 GQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTY 784
Query: 298 NSVLNS 303
N+ N
Sbjct: 785 NAFTNG 790
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 88/179 (49%), Gaps = 7/179 (3%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
+G RE+ + + KLG V+ Y N+I CK S R D+ Y ++V
Sbjct: 268 KGHREDDAIGLFSKMEKLGVAPN--VVTYNNIIHGLCK--SGR-LDEAYRFKEKMVKEKV 322
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
S + ++ I+GL ++ + EA +++EM G P+ Y +I GY ++G + +
Sbjct: 323 SPSLITYSV--FINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEA 380
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+I + M S G ++V N ++ + +++ + L++M G+P + +++ V+N
Sbjct: 381 LKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVIN 439
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 172 YARLNQL--VN------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
Y++L Q+ VN SS +++ + MI G C++G+ EA L+ EM KG+ P
Sbjct: 721 YSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPD 780
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
Y G + G +E+ ++ ++M S +D +
Sbjct: 781 AVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEI 817
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++GQ ++ +++EM + P+ F Y +I G+ +LG ++ +++N+M
Sbjct: 716 TIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEK 775
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G D V N + ++ +M + TY ++++ C
Sbjct: 776 GILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSSGAVCLDEITYTTLIDGC 826
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLE--------------------------- 221
R ++ISG C+ G+ E L EEM KG++
Sbjct: 536 RITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWH 595
Query: 222 --------PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
P+ + Y +I GY + +E+ E ++N++ S +++V N ++ +Y +
Sbjct: 596 ECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCING 655
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ MK G+ S TY+S+++ I
Sbjct: 656 NMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNI 689
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 60/144 (41%), Gaps = 35/144 (24%)
Query: 195 MISGLCEMGQPHEAENLIEE-----------------------------------MRVKG 219
MI G C+ + E ENL+ E M+ +G
Sbjct: 612 MIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRG 671
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
+ S Y +++G +GL++D + ++++M +G + VC ++ Y +++++
Sbjct: 672 VLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVN 731
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNS 303
+ LQ+M I + TY +++
Sbjct: 732 IVLQEMSSHNIHPNKFTYTIMIDG 755
>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 524
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 106/228 (46%), Gaps = 28/228 (12%)
Query: 155 LIDSFCKHDSKRGFDDTYA----RLNQLVNSSSSVY---VKRQALKS------MISGLCE 201
L+D+ CK S + + A +NQ VN + V+ KR+ +I LC+
Sbjct: 264 LVDALCKEGSTKETKNVLAVMMKEVNQ-VNKAKHVFNIIGKRRVTPDVHSYTIIIKRLCK 322
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+ EA +L EMR KG+ P Y +I G + + +++QM + G D +
Sbjct: 323 IKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVIT 382
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS-----TIMSMLQDLN 315
L + ++++ + V ++K+KD GI ++ TYN +++ C + QDL
Sbjct: 383 YTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLL 442
Query: 316 SNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
+ +++ ++N +E +++++++ED+ + + +++
Sbjct: 443 IKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYET 490
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 19/186 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T+I++ L K+ + L LF Y +LID CK S+R + L+Q
Sbjct: 314 TIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCK--SER-ISHAWELLDQ 370
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ V S + LC+ Q +A L+++++ +G++P+ Y +I G +
Sbjct: 371 MHARGQPADV--ITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKE 428
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G E+ + I + G +V N++++ + L+KM+D+G V TY
Sbjct: 429 GRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTY 488
Query: 298 NSVLNS 303
+++ +
Sbjct: 489 ETIIRA 494
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 50/96 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ A+ + +++ +KG + + + Y +I G GL ++ ++ +ME +G
Sbjct: 421 LIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNG 480
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D V ++ + ++E + L++M G+
Sbjct: 481 CTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 97/221 (43%), Gaps = 19/221 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++CK D+ + L + SS + + +I+GLC G EA
Sbjct: 45 VVTYNTLIDAYCKMGR---IDEAFGLLKSM--SSKGMQPNLISYNVIINGLCREGSMKEA 99
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++EEM KG P Y ++ GY + G I +M +G V +++S
Sbjct: 100 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLS 322
L+R + + +M+ G+ + RTY ++++ S +L ++ + F S
Sbjct: 160 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 219
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
++ ++ EE + VV+E+ + + + + + +
Sbjct: 220 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 111 PKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L++ II L ++G +EA ILE + G E+ Y L++ +CK + F
Sbjct: 78 PNLISYNVIINGLCREGSMKEAWE-ILEEMGYKGFTPDEVT--YNTLLNGYCKEGN---F 131
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
++V + S V ++I+ +C+ + A ++MR++GL P+ Y
Sbjct: 132 HQALVIHAEMVRNGVSPSV--VTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYT 189
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I G+ R GLL + RI+N+M G V N + + + + +Q+M +
Sbjct: 190 TLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEK 249
Query: 289 GIPFSVRTYNSVLNS 303
G+ V +Y+++++
Sbjct: 250 GLAPDVVSYSTIISG 264
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID F S++G ++ Y LN++ S S V + I G C + + EA
Sbjct: 188 YTTLIDGF----SRQGLLNEAYRILNEMTESGFSPSV--VTYNAFIHGHCVLERMEEALG 241
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+++EM KGL P Y II G+ R G L+ ++ +M G D V + ++
Sbjct: 242 VVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLC 301
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ Q+M D G+P TY +++N+
Sbjct: 302 EMRRLTEACDLSQEMLDMGLPPDEFTYTTLINA 334
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+S CK R + +Q+ + + ++I G G +EA
Sbjct: 150 VVTYTALINSMCK---ARNLNRAMEFFDQM--RIRGLRPNERTYTTLIDGFSRQGLLNEA 204
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM G PS Y I+G+ L +E+ +V +M G D V + ++S
Sbjct: 205 YRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISG 264
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ EL R Q+M + G+ TY+S++
Sbjct: 265 FCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLI 297
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 149 VLFYCNLIDSFC-KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +I FC K + R F + + V+ + Y S+I GLCEM + E
Sbjct: 255 VVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTY------SSLIQGLCEMRRLTE 308
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +L +EM GL P F Y +I Y G L + ++M G D V +++++
Sbjct: 309 ACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLIN 368
Query: 268 SYGDH---NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E R++ L + + +P V TY++++ +CS I
Sbjct: 369 GLNKQARTREAKRLLFKL--IYEESVPSDV-TYDTLIENCSNI 408
>gi|297829236|ref|XP_002882500.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328340|gb|EFH58759.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 871
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A I E + R +V Y +LI +F H K +D +
Sbjct: 453 LIDGLGKVGRVDDAYK-IYEKMLDSDCRTNSIV--YTSLIKNFFNHGRK---EDGHKIYK 506
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+VN + S + Q L + + + + G+P + + EE++ + P Y +I+G +
Sbjct: 507 DMVNQNCSPDL--QLLNTYMDCMFKAGEPEKGRAMFEEIKSRRFVPDARSYSILIHGLIK 564
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N+V+ + ++++ L++MK G +V T
Sbjct: 565 AGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT 624
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 625 YGSVIDGLAKI 635
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 62/114 (54%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +I G C+ G+ ++A L+EEM+ KG EP+ Y +I G ++ L++ + +
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S ++ V + ++ +G + L L+++ G+ +V T+NS+L++
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDA 701
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P F A L S H S + L+ ++ +E ++ L +I K+G+ +
Sbjct: 166 PAFSAYTTLIGAFSA-VNH---SDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVD 220
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
A +L+ E K S + ++VL Y IDSF K D + +++ ++ +
Sbjct: 221 SALSLLDEM--KSSSLDADIVL-YNVCIDSFGKVGK---VDMAWKFFHEI--EANGLKPD 272
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
SMI LC+ + EA + E + P + Y +I GYG G ++ ++
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + G+ + N +L+ ++ + ++MK P ++ TYN +++
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEMKKDAAP-NLSTYNILID 385
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC++ + ++A +EM+ +G++PS Y +I G + G + + + ++ +++G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 255 TRVDTVCSNMVLSSYGDHN 273
D+ C N ++ + N
Sbjct: 793 GVPDSACYNAMIEGLSNGN 811
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%), Gaps = 1/112 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI G G+ EA +L+E R KG PS Y CI+ ++G +++ R+ +M
Sbjct: 310 AYNTMIMGYGSAGKFDEAYSLLERQRAKGSIPSVIAYNCILTCLRKMGKVDEALRVFEEM 369
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ D + N+++ +L M+ +G+ +VRT N +++
Sbjct: 370 KKDAAP-NLSTYNILIDMLCRAGKLDCAFELRDSMQKAGLFPNVRTVNIMVD 420
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 590 YNIVIDGFCKCGK---VNKAYQLLEEMKTKGFEPTVVTYG--SVIDGLAKIDRLDEAYML 644
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + K +E + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNVYTWNSLLDALVK 704
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ ++ Q MK+ + TY ++N
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILING 736
>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
Length = 557
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 63/115 (54%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ R ++I GLCEM +A+ + +EM +G++P+ + Y ++ Y R+G LE ++
Sbjct: 281 IDRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYYCRVGDLEKARKV 340
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++M + G + TV N+++ + H + + ++M GI V TY++++
Sbjct: 341 YDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSVKGIKHDVITYDTLI 395
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/160 (19%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
YC+L+ +C+ +++ +D+ A+ + S ++ +K G C G+ ++
Sbjct: 321 YCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIK---------GFCVHGRVYD 371
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A + EEM VKG++ Y +I G ++G L+ ++ S G + ++
Sbjct: 372 ALEVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTVSTFSPLIG 431
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ ++ ++ V + M+ G+ V + + ++N I
Sbjct: 432 AMCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKI 471
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKR 166
Q N ++++ + G E+A + E L+K G ++ + CN LI FC H R
Sbjct: 315 QPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAK-GFKQTTVS---CNILIKGFCVH--GR 368
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+D ++ S +K + ++I GLC++G+ A + E GLEP+
Sbjct: 369 VYDAL-----EVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFLSSGLEPTV 423
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ +I G + ++N M + G ++ +++ + N + WL
Sbjct: 424 STFSPLIGAMCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSDEGMAWLAG 483
Query: 285 MKDSGIPFSVRTYNSVLNSCST 306
M I +T++ ++ S ST
Sbjct: 484 MLKDNIKPRKQTFDYLVESLST 505
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ EA NL+ M+ KGL+P + Y +I G+ R G L+ + M SDG
Sbjct: 319 LIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDG 378
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +++ + + + +K+ + G P +V +YN++ ++
Sbjct: 379 CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSA 427
>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
Length = 715
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%)
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
EMG AEN+ +EMRV+G+ P YK + Y R+G + D +R + M G VD
Sbjct: 208 EMGLVGYAENVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNA 267
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++S++ + SR+ + K + G+ ++ + S++N
Sbjct: 268 TCTLMISTFCEKGFASRVFWYFDKWVELGLKPNLINFTSLING 310
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 12/234 (5%)
Query: 71 FIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQRE 128
F+ NA L+ +S F + + E P L+ +I L K+G +
Sbjct: 262 FVVDNATCTLMISTFCEKGFASRVFWYFDKWVE---LGLKPNLINFTSLINGLCKRGSIK 318
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A + LE + K G + V + LID CK +G+ + RL + S
Sbjct: 319 QAFEM-LEEMVKKGWKPN--VYTHTALIDGLCK----KGWTEKAFRLFLKLVRSDDYKPN 371
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
SMI G C+ + + AE L+ M+ +GL P+ Y C+I G+ + G E +++
Sbjct: 372 VHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMD 431
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M +G + N + S L+K G+ TY +++
Sbjct: 432 LMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLGLQADTVTYTILIS 485
>gi|225457536|ref|XP_002272226.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial [Vitis vinifera]
gi|297745544|emb|CBI40709.3| unnamed protein product [Vitis vinifera]
Length = 695
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 61/116 (52%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
K L ++I+ L G+ EAE + EE++ GL P Y ++ GY + G L+D E IV
Sbjct: 290 KTATLVAVITALGNAGRTEEAEAIFEELKEGGLMPRTRAYNALLKGYVKTGSLKDAESIV 349
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ME G D ++++ +Y + + L++M+ SG+ + ++ +L S
Sbjct: 350 SEMERSGFSPDEHTYSLLIDAYANAGRWESARIVLKEMEASGVRPNSYVFSRILAS 405
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 59/116 (50%)
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+ +A +++ G + G +AE+++ EM G P Y +I Y G E ++
Sbjct: 325 RTRAYNALLKGYVKTGSLKDAESIVSEMERSGFSPDEHTYSLLIDAYANAGRWESARIVL 384
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ME+ G R ++ + +L+SY D + + L++M++SG+ YN ++++
Sbjct: 385 KEMEASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRHFYNVMIDT 440
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 8/201 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S + N + + I+A +G+ +++ ++ E + S +R FY +ID+F K
Sbjct: 388 EASGVRPNSYVFSRILASYRDRGKWQKSFQVLREMRNSGVSPDRH---FYNVMIDTFGKC 444
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ T+ R+ V ++I C+ G ++AE L E M+ G P
Sbjct: 445 NCLDHALATFDRMRM-----EGVQPDAVTWNTLIDCHCKSGHHNKAEELFEAMQESGCSP 499
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I +G ED++ ++ +M+S G + V ++ YG + L
Sbjct: 500 CTTTYNIMINSFGEQERWEDVKTLLGKMQSQGLLANVVTYTTLVDIYGQSGRFKDAIECL 559
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
+ MK G+ S YN+++N+
Sbjct: 560 EVMKSVGLKPSSTMYNALINA 580
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +A +E M+ GL+PS Y +I Y + GL E M +DG + +
Sbjct: 550 GRFKDAIECLEVMKSVGLKPSSTMYNALINAYAQRGLSEQAINAFRVMRADGLKPSVLVL 609
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++ + V TY +++ +
Sbjct: 610 NSLINAFGEDRRDAEAFSVLQYMKENDLKPDVVTYTTLMKA 650
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I+GLC G+ EA L EM G EP+ Y +I G + G R+ +M
Sbjct: 168 TFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKM 227
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
E + + + V N ++ S ++ V +L +M D GIP V TYN++L+ CS
Sbjct: 228 EQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCS 283
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 5/161 (3%)
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
+R + V+ Y +IDS CK R ++ L+++V+ V +++ G C +
Sbjct: 230 NRGKPNVVTYNTIIDSLCK---DRLVNEAVEFLSEMVDRGIPPDV--VTYNTILHGFCSL 284
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
GQ +EA L +EM + + P + ++ G + G++ + + M G +
Sbjct: 285 GQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTY 344
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++ Y HN++ + L M G ++ +YN ++N
Sbjct: 345 NALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILING 385
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +G+ +EA L E + S V+ Y +I+ CK+ + + ++
Sbjct: 172 LINGLCNEGKIKEAVGLFNEMV---WSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKME 228
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q + V ++I LC+ +EA + EM +G+ P Y I++G+
Sbjct: 229 QNRGKPNVV-----TYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCS 283
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LG L + R+ +M DTV N+++ +S + M + G + T
Sbjct: 284 LGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYT 343
Query: 297 YNSVLNS 303
YN++++
Sbjct: 344 YNALMDG 350
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS + A ++ G C+ G EA L++EM + ++P+ Y +I G G LE
Sbjct: 439 SSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLE 498
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +++ +DG R D N+++ + +KM+D G +YN ++
Sbjct: 499 VAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVII 558
>gi|356552149|ref|XP_003544432.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g53170-like [Glycine max]
Length = 481
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 98/212 (46%), Gaps = 10/212 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + ++ W+Q + A+++ L K Q EEA +L+ E + L + V Y
Sbjct: 107 ALEIFALLRKQYWYQPRCRTYAKLLMMLGKCRQPEEA-SLLFEIM--LSEGLKPTVDVYT 163
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE-AENLI 212
L+ ++ + T + +V+ VY S++ C + + E+++
Sbjct: 164 ALVSAYGQSGLLDQAFSTVEDMKSVVDCEPDVYTY-----SILIRCCAKFRRFDLIEHVL 218
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGD 271
EM G++ + Y II GYG+ + E M+ +N M E+ + D N + +YG+
Sbjct: 219 AEMSYLGIKCNCVTYNSIIDGYGKASMFEQMDDALNDMIENGNSHPDVFTLNSFVGAYGN 278
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +M W + + GI + T+N+++ S
Sbjct: 279 AGQIDKMEKWYDEFQLMGIKPDITTFNTMIKS 310
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 58/108 (53%), Gaps = 10/108 (9%)
Query: 202 MGQPHEAENLIE---EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
G+ E E + + +M+ G++P+ Y ++ Y ++G ++ ++ I+ +E+ +D
Sbjct: 346 FGKAGEIEKMDQHFLKMKHLGVKPNSITYCSLVSAYSKVGCIDKVDSIMRHVENSDVVLD 405
Query: 259 TVCSNMVLSSYGDHNELSRMV-LWL----QKMKDSGIPFS--VRTYNS 299
T N ++S+YG L +M L+L +K + I F+ +++YN+
Sbjct: 406 TPFFNCIISAYGQAGNLKKMGELFLAMRERKCEPDNITFACMIQSYNT 453
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 99 MRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
M E+ +F P +V +I K G+ E+ + L+ + LG + + YC+L+
Sbjct: 324 MDFMEKRFF--TPTIVTYNTVIEVFGKAGEIEKMDQHFLK-MKHLGVKPNSIT--YCSLV 378
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
++ SK G D + + V +S V + +IS + G + L MR
Sbjct: 379 SAY----SKVGCIDKVDSIMRHVENSD-VVLDTPFFNCIISAYGQAGNLKKMGELFLAMR 433
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
+ EP + C+I Y G+ E ++ + N M S + + T
Sbjct: 434 ERKCEPDNITFACMIQSYNTQGMTEAVQNLENMMISAKSSLGT 476
>gi|255685748|gb|ACU28363.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L ++++ V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G++G ++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDXAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTY 297
G D+ C N ++ ++ H +++ V ++M ++ G +V TY
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVNEAVALFKRMEEEEGCDQTVYTY 165
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 52/102 (50%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++ +M +G + D V ++V
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLQRMIDEGFKPDVVTYSVV 62
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ + + + + + + +G+ + Y+S+++ +
Sbjct: 63 VNGLCKNGRVEEALDYFKTCRFNGLAINSMFYSSLIDGLGKV 104
>gi|449018641|dbj|BAM82043.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 805
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 55/112 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G P +AE+L ++R +GLE F ++ + R ++E + +M S
Sbjct: 544 SLIDACARAGLPDQAESLFRQLRAEGLEYDLFICNALLGAFARAKMVERAFQAFEEMRSA 603
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G R D + N ++++ E + + MK S I TYN+++++CS
Sbjct: 604 GVRGDRITFNTLITAAARAREFDKAWKAFETMKKSNISADATTYNALIDACS 655
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L K G+ ++A L+ + +SK S V+ Y +L+ CK D+ A L
Sbjct: 954 IVDSLVKSGKVDDACRLVEDMVSKGCSPN---VVTYSSLLHGLCKAGK---LDEATALLQ 1007
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ S S + ++I G C++G+ EA +L+EEM G +P+ Y ++ + +
Sbjct: 1008 RMTRSGCSPNI--VTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCK 1065
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ED +V M G + N +L + +E+ R L M G +V +
Sbjct: 1066 CGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVS 1125
Query: 297 YNSVL 301
YN+V+
Sbjct: 1126 YNTVI 1130
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y ++ FCK + ++ L Q+V V + ++I+GLC++ Q EA
Sbjct: 265 VFSYNTVLHGFCKANR---VENALWLLEQMVTRGCPPDV--VSYTTVINGLCKLDQVDEA 319
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++M +G +P+ Y ++ G+ R+G L+ +V +M G R + + N ++
Sbjct: 320 CRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHV 379
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N++ R LQ M +G P Y+++++
Sbjct: 380 FCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISG 414
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 80/174 (45%), Gaps = 15/174 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y ++DS K DD + +V+ S V S++ GLC+ G+ EA
Sbjct: 948 VFTYSTIVDSLVKSGK---VDDACRLVEDMVSKGCSPNV--VTYSSLLHGLCKAGKLDEA 1002
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++ M G P+ Y II G+ +LG +++ ++ +M G + + V ++L +
Sbjct: 1003 TALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDA 1062
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN----------SCSTIMSMLQ 312
+ + + ++ M + G ++ TYNS+L+ +C + SM+Q
Sbjct: 1063 FCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQ 1116
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
KS++ GLC+ GQ +A EM K P Y +I G + L+D R++ +M
Sbjct: 200 KSILRGLCDAGQCSDAVLHFREMS-KTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVD 258
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G + N VL + N + + L++M G P V +Y +V+N
Sbjct: 259 NGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVING 309
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 9/187 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +EA T +L+ +++ G ++ Y +ID CK D+ Y L ++V+
Sbjct: 993 LCKAGKLDEA-TALLQRMTRSGCSPN--IVTYNTIIDGHCKLGR---IDEAYHLLEEMVD 1046
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V + ++ C+ G+ +A L+E M KG P+ F Y ++ + + +
Sbjct: 1047 GGCQPNVVTYTV--LLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEV 1104
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E ++++ M G + V N V++ ++ VL L++M + + T+N++
Sbjct: 1105 ERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTI 1164
Query: 301 LNS-CST 306
+++ C T
Sbjct: 1165 IDAMCKT 1171
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 21/237 (8%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCK 161
+E Q +P++V +++ L G A + E + E+ F CN L++ K
Sbjct: 85 DEYRGQLSPEIVGKVLQRLIDPG----AALVFFEWAETRDGYQHEI--FCCNCLLNVLVK 138
Query: 162 -HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
H + D +R+ + Y ++ISG G+ A L +EM KGL
Sbjct: 139 AHQYSQAHDLFRSRIEGQWGGDTVTY------STLISGFIRAGKILPAYELFDEMNRKGL 192
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
+ +K I+ G G D +M S D+V N +++ + L +
Sbjct: 193 KAHAGVHKSILRGLCDAGQCSDAVLHFREM-SKTCPPDSVTYNTMINGLSKSDRLDDAIR 251
Query: 281 WLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
L++M D+G +V +YN+VL N + +L+ + + P ++ T V+N
Sbjct: 252 LLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCPPDVVSYTTVIN 308
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ K G+ EA L LE + + G R V LID+ CK D L
Sbjct: 411 IISGFCKAGKLREAHDL-LEQMIRRGCRPD--VACLSTLIDALCK---AAAIDSAQELLR 464
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ + V A +I LC+ + EAE+ ++ M P Y ++ G +
Sbjct: 465 MSIGMDCAPDV--VAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCK 522
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ D + ++M + G D V ++V+ S+ N L L++MK++ V T
Sbjct: 523 SRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVT 582
Query: 297 YNSVLNS 303
Y++++N
Sbjct: 583 YSALING 589
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I GLC + A L +EM G P F Y I+ + G ++D R+V M S
Sbjct: 918 VIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSK 977
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V + +L +L LQ+M SG ++ TYN++++
Sbjct: 978 GCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDG 1027
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI+GL + + +A L+EEM G P+ F Y +++G+ + +E+ ++ QM +
Sbjct: 235 TMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTR 294
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V V++ +++ + KM G +V TY ++++
Sbjct: 295 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDG 344
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK + D + +++ + + ++I GLC++ + +A
Sbjct: 580 VVTYSALINGLCKAGT---VDKAFDVFQEMLGCGCAPNL--VTYNTLIDGLCKINKVEQA 634
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++E MR + P Y C+I G LE+ R++ +M+ G D + +L +
Sbjct: 635 AEMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRA 694
Query: 269 YGDHNELSRMVLWLQKMK 286
N L + L++M+
Sbjct: 695 LQKTNNLELVEQLLKEME 712
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 30/212 (14%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I SFCK ++ D + L ++ + V ++I+GLC+ G +A
Sbjct: 545 VVTYSIVIHSFCKDNN---LDSAFKMLERMKEAKCVPDV--VTYSALINGLCKAGTVDKA 599
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ +EM G P+ Y +I G ++ +E ++ M D++ +++
Sbjct: 600 FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
+ + L L++MKD G TY ++L + LQ N+ LEL E
Sbjct: 660 LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRA-------LQKTNN-------LELVE 705
Query: 329 VLNEEEVSVVKELEDSSVLDEAMKWDSGETKL 360
L +KE+E + E +W++ +L
Sbjct: 706 QL-------LKEMEAT----EEGQWNANGARL 726
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 96/221 (43%), Gaps = 19/221 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI + CK +KR + + L+ +V + Y S++ GLC+ + ++A
Sbjct: 475 VVAYSILIHALCK--AKR-LPEAESWLDVMVKNRC--YPDVVTYNSVVDGLCKSRRINDA 529
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + MR G+ P Y +I+ + + L+ +++ +M+ D V + +++
Sbjct: 530 FLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALING 589
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLS 322
+ + Q+M G ++ TYN++++ I ML+ +
Sbjct: 590 LCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPD 649
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDS 355
+ T ++N EE V++E++D L + M + +
Sbjct: 650 SITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGT 690
>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 638
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 127 REEAETLILETLSKLGSRERELVLF-YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSS 184
+E+ +LE + + + R +F Y +I+ FCK+ + + F+ A ++
Sbjct: 310 KEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMV 369
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+Y ++I G C+MGQ +A L EM KG P+ + Y +IYG+ ++G L++
Sbjct: 370 MYT------TLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 423
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ +M G + T+ N ++ H + ++M I V TYN+++
Sbjct: 424 KLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLI 480
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
K G +EA L + L G +E L CN LI C H D+ Y ++
Sbjct: 415 KIGNLDEAMKLYKKMLDS-GYKETTLS---CNTLILGLCLHGRT---DEAYDFFREM--P 465
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ ++I G C G+ ++ +L++E++ KGL+PS Y +I +LG ++
Sbjct: 466 CKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQ 525
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + N M + G + + ++S + + + WL M S + T+ ++
Sbjct: 526 EAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLI 585
Query: 302 NS 303
S
Sbjct: 586 QS 587
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI +FC D+ +R +++ S + A +ISG C+ H L+
Sbjct: 269 LIQAFCN-------DNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELV 321
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
M VK P F Y+ II G+ + + + N ++ G D V ++ +
Sbjct: 322 HTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKM 381
Query: 273 NELSRMV-LWLQKMKDSGIPFSVRTYNSVL 301
+L LW + M D G + +YN+++
Sbjct: 382 GQLEDASKLWFE-MIDKGFLPNEYSYNTLI 410
>gi|260780546|gb|ACX50819.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 182
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q P + +I L K+G+ E + E + + GS+ V Y LID + K +
Sbjct: 3 QVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKSGN--- 56
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D L+++++ V +++GLC+ G+ EA + + + GL + Y
Sbjct: 57 VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFY 114
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ + ++M++
Sbjct: 115 SSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEE 174
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 1 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 60
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 61 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 120
>gi|356564951|ref|XP_003550709.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
chloroplastic-like [Glycine max]
Length = 488
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/214 (20%), Positives = 96/214 (44%), Gaps = 14/214 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + E++++Q ++I L K GQ A L + + EL Y
Sbjct: 109 ALQVFDMLREQTFYQPKEGTCMKLIVLLGKSGQPHRAHQLFTTMIEEGLEPTPEL---YT 165
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVN---SSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L+ ++C+ + D+ ++ LN++ V+ +K + + +
Sbjct: 166 ALLAAYCRSNM---IDEAFSVLNEMKKLPLCQPDVFTYSTLIKVCVDAF----KFDLVQL 218
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSY 269
L EEM + + P+ ++ GYG+ G+ + ME++++ M +S + D N ++S +
Sbjct: 219 LYEEMAERSITPNTVTQNIVLGGYGKAGMFDQMEKVLSSMLQSTTCKPDVWTMNTIISVF 278
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G+ ++ W +K + GI RT+N ++ +
Sbjct: 279 GNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGA 312
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ ++IS MGQ E E+ R G+EP + +I YG+ + + M ++ M
Sbjct: 270 TMNTIISVFGNMGQIDMTEKWYEKFRYFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYM 329
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T N V+ ++ D + M +M+ G+ +T ++N
Sbjct: 330 RKLQFPWTTSTYNNVIEAFADAGDAKHMECTFDQMRAEGMKADTKTLCCLIN 381
>gi|222625337|gb|EEE59469.1| hypothetical protein OsJ_11675 [Oryza sativa Japonica Group]
Length = 1095
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 114 VAEIIAFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170
VA A +D + G+ +EA ++ E + G R EL Y L++ +CKH D
Sbjct: 369 VATYTALIDGYCRNGRTDEARRVLYE-MQITGVRPSELT--YSALLNGYCKHSKLGPALD 425
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
L S S+ + R +I G C++G+ +A+ +++ M G++P Y +
Sbjct: 426 LIKYLR-----SRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSAL 480
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I G ++G++ + + I+++M+ G + V ++ + + + + SG+
Sbjct: 481 INGMCKMGMIHETKEILSRMQKSGVLPNNVLYTTLVFYFCKAGHAKEALKYFVDIYRSGL 540
Query: 291 PFSVRTYNSVLNS 303
+ +N++L S
Sbjct: 541 VANSVIHNALLCS 553
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 58/122 (47%), Gaps = 7/122 (5%)
Query: 189 RQALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
RQ+LK ++I G C G+ EA ++ EM++ G+ PS Y ++ GY + L
Sbjct: 362 RQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQITGVRPSELTYSALLNGYCKHSKLG 421
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + S ++ +++ + E+S+ L+ M GI V TY++++
Sbjct: 422 PALDLIKYLRSRSISINRTMYTILIDGFCQLGEVSKAKQILKCMLADGIDPDVITYSALI 481
Query: 302 NS 303
N
Sbjct: 482 NG 483
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 68/170 (40%), Gaps = 31/170 (18%)
Query: 152 YCNLIDSFCKHDS------------KRGF-DDTYAR---LNQLVNSSS------------ 183
Y L+D FCK ++G DT A LN LVN
Sbjct: 687 YTILLDGFCKRGKVVPALILLQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEII 746
Query: 184 ---SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+Y A SM++G + GQ +E E L+ M + PS Y +++GY + G L
Sbjct: 747 CKEGLYADCIAYNSMMNGYLKGGQINEIERLMRNMHENEVYPSSASYNILMHGYIKKGQL 806
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ M +G + D V +++ ++ + V +L+KM G+
Sbjct: 807 SRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAVKFLEKMVLEGV 856
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 128 EEAETLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYA 173
E AE+ I+ L K G E +++F + L+ CK DD +
Sbjct: 911 EVAESSIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFK---IDDAF- 966
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L QL+ S + V +I+GLC +A +L EEM+ KGL P+ Y +
Sbjct: 967 HLKQLM-ESCGLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTYITLTGA 1025
Query: 234 YGRLGLLEDMERIVNQMESDG 254
G ++D E+++ +E G
Sbjct: 1026 MYATGTMQDGEKLLKDIEDRG 1046
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/104 (23%), Positives = 53/104 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ GLC+ G+ EA + + G+ P+ + +++G + ++D + MES
Sbjct: 916 SIVRGLCKCGKVEEAIIVFSSIMRAGMVPTIATFTTLMHGLCKEFKIDDAFHLKQLMESC 975
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G +VD V N++++ + + + ++MK G+ ++ TY
Sbjct: 976 GLKVDVVTYNVLITGLCNKKCICDALDLYEEMKSKGLLPNITTY 1019
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G+ + A + +M + L+PS Y +I GY R G ++ R++ +M+
Sbjct: 339 TLIHGFFGEGKINLAIYIFNQMLRQSLKPSVATYTALIDGYCRNGRTDEARRVLYEMQIT 398
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R + + +L+ Y H++L + ++ ++ I + Y +++
Sbjct: 399 GVRPSELTYSALLNGYCKHSKLGPALDLIKYLRSRSISINRTMYTILIDG 448
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
VY + ++ G + GQ L +M +G++P Y+ +I+G GL+E
Sbjct: 786 VYPSSASYNILMHGYIKKGQLSRTLYLYRDMVKEGIKPDNVTYRLLIFGLCEYGLIEIAV 845
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+ + +M +G D + ++++ ++ + +++S + MK G
Sbjct: 846 KFLEKMVLEGVFPDNLAFDILIKAFSEKSKMSNALQLFSYMKWVG 890
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ + L +++ G+C+ G EA +L E+M + + P + Y ++ G+ + G + +
Sbjct: 647 IDEKTLNTLLVGICKHGTLDEALDLCEKMVTRNILPDTYTYTILLDGFCKRGKVVPALIL 706
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK-DSGIPFSVRTYNSVLNS 303
+ M G DT+ +L+ + ++ Q++ G+ YNS++N
Sbjct: 707 LQMMLEKGLVPDTIAYTCLLNGLVNEGQVKAASYMFQEIICKEGLYADCIAYNSMMNG 764
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN------SCSTIMSM 310
+D N+VL+S +LS+ LQKMK+ +P +V TYN++LN C + + +
Sbjct: 228 LDVTTCNIVLNSLCTQGKLSKAESMLQKMKNCRLPNAV-TYNTILNWYVKKGRCKSALRI 286
Query: 311 LQDLNSN 317
L D+ N
Sbjct: 287 LDDMEKN 293
>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62930, chloroplastic; Flags: Precursor
gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 320 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 375
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 376 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G + G + ++I +M SDG D + +++L + +L + ++ +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 491 LQKSKMEPDIYTYN 504
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y +I G+ R GL E+ + + +M+ DG
Sbjct: 506 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T ++ N ++ + + + +++M+ G T + V+N
Sbjct: 566 TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I GL + EA LI+ M +G +P F Y ++ G + G ++ ++ +ME
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 247
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V ++ + ++ ++ + +M + GI +V TYNS++
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLN- 176
+++L+ L K G E+ LV+F Y +I+ CK D + L+
Sbjct: 469 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V + +Y +MISG C G EA+ L EM+ G P+ Y +I R
Sbjct: 529 KGVKPNVIIYT------TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
G ++ +M S G D +MV++ D
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ + LID+F K ++++ +D+ R S+ S+I+G C +
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKR---------SIDPDIFTYSSLINGFCMHDR 375
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA+++ E M K P+ Y +I G+ + +E+ + +M G +TV N
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +KM G+P + TY+ +L+
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Glycine max]
Length = 905
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 165 KRGFD-DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
K GF DTY ++ +++ +A +I G C+ G+ ++A L+EEM+ KGL+P+
Sbjct: 598 KGGFSKDTYKLFYEM--KEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPT 655
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G ++ L++ + + +S ++ V + ++ +G + L L+
Sbjct: 656 VVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILE 715
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
++ G+ + T+N +L++
Sbjct: 716 ELMQKGLTPNTYTWNCLLDA 735
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 56/105 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ + L EE++ +GL P Y +I+G + G +D ++ +M+ G +DT
Sbjct: 565 GEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAY 624
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
N+V+ + ++++ L++MK G+ +V TY SV++ + I
Sbjct: 625 NIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKI 669
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 18/178 (10%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI G +G+ +EA +L+E + KG PS Y CI+ GR G +E+ RI+ M
Sbjct: 344 AYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN-------- 302
+ D + N+++ EL + MK++G+ ++ T N +++
Sbjct: 404 KMDAAP-NLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRL 462
Query: 303 --SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGET 358
+CS + + + + D ++ L + L ++ D+ +L E M DSG+T
Sbjct: 463 DEACSIFLGLDHKVCTPD-SVTFCSLIDGLGRH-----GKVNDAYMLYEKM-LDSGQT 513
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M++GLC++ + ++A +EM+ +GL+P+ Y +I G R+G + + + + + +S G
Sbjct: 767 MVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG 826
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ C N ++ + N+ + ++ + G +T +L++
Sbjct: 827 GIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDA 875
>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
Length = 915
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 100/213 (46%), Gaps = 19/213 (8%)
Query: 94 AFPLYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV 149
AF L R+ + S F +N +I L K G+ +EAE L+ + + + G ++
Sbjct: 350 AFDLVNRVKKVGAMPSLFVYNA-----LINSLCKDGKFDEAE-LLFKEMGEKGLCANDVT 403
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y LIDSFC+ RG DT L +++ + + V S+I+G C++G A
Sbjct: 404 --YSILIDSFCR----RGKLDTAIHFLGKMIMAGIKITV--YPYNSLINGHCKLGNLSAA 455
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ +EM KGL+P+ Y +I GY G L + R+ ++M G +T ++S+
Sbjct: 456 VSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISA 515
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N ++ +M + + + TYN ++
Sbjct: 516 LFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMI 548
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA-LKSMISGLCEMGQPHEAEN 210
YC L+ CK + F+ +++++ +V +A L S++ GL G+ +A +
Sbjct: 299 YCTLVLGLCK---VQEFEVGAGVMDEMIELG---FVPTEAALSSLVEGLRRKGKVVDAFD 352
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L+ ++ G PS F Y +I + G ++ E + +M G + V ++++ S+
Sbjct: 353 LVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFC 412
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + +L KM +GI +V YNS++N
Sbjct: 413 RRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 6/136 (4%)
Query: 170 DTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D + +N++ V + S++V ++I+ LC+ G+ EAE L +EM KGL + Y
Sbjct: 349 DAFDLVNRVKKVGAMPSLFV----YNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTY 404
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I + R G L+ + +M G ++ N +++ + LS V + +M D
Sbjct: 405 SILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMID 464
Query: 288 SGIPFSVRTYNSVLNS 303
G+ +V +Y S+++
Sbjct: 465 KGLKPTVVSYTSLISG 480
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAE 209
Y +I+ CK + + LNQ+V Y R +IS LC G+ EA+
Sbjct: 544 YNVMIEGHCKEGNTV---KAFELLNQMVQKGLVPDTYTYR----PLISSLCSTGRVCEAK 596
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
I+++ + + + Y +++GY + G L D + +M G +D VC +++
Sbjct: 597 KFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGT 656
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPL------SI 323
+ S + L+ M D + Y S+++ S S+ + D + +I
Sbjct: 657 IKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNI 716
Query: 324 LELTEVLNE 332
+ T ++NE
Sbjct: 717 VTYTTLINE 725
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
++ ++ L ++G+ +A L+ + K+G+ V Y LI+S CK D K FD+
Sbjct: 334 LSSLVEGLRRKGKVVDAFDLV-NRVKKVGAMPSLFV--YNALINSLCK-DGK--FDEAEL 387
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
++ + +I C G+ A + + +M + G++ + + Y +I G
Sbjct: 388 LFKEM--GEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ +LG L ++M G + V ++S Y + +L +M GI +
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPN 505
Query: 294 VRTYNSVLNS 303
T+ +++++
Sbjct: 506 TYTFTTLISA 515
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 51/116 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C++G+ EA L++EM + P Y IIY R G L+ + M + G
Sbjct: 791 LVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKG 850
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ DT+ N ++ EL + M G+ + T+ S+ + S S+
Sbjct: 851 LKPDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASRKFSI 906
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 8/162 (4%)
Query: 144 RERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
R R + Y ++ID + K S K+ F +++ + Y ++I+ LC+
Sbjct: 676 RLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYT------TLINELCKA 729
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G +AE L +EM V P+ Y C + R G +E ++ N M G +TV
Sbjct: 730 GLMDKAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDMLK-GLLANTVSY 788
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
N+++ + + L +M D+ I TY++++ C
Sbjct: 789 NILVRGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQC 830
>gi|225429339|ref|XP_002269471.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02860
[Vitis vinifera]
Length = 811
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 9/207 (4%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
++R +ES N ++A II+ L K G+ A +L L L K G V Y ++I
Sbjct: 152 WVRNRKESELLLNGSIIAVIISILGKGGRVSAAASL-LHNLCKDGFDVD--VYAYTSMIT 208
Query: 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP-HEAENLIEEMR 216
+F + R + ++ ++ + + +++ +MG P ++ L++ M+
Sbjct: 209 AFTSNGRYREAVMVFKKMEEVGCKPTLI-----TYNVILNVYGKMGMPWNKMVGLVDRMK 263
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
G+ P + Y +I R L E+ ++ +M+ G D V N +L YG
Sbjct: 264 SAGIAPDSYTYNTLISCCRRGNLYEEAAGVLKEMKLAGFSPDKVTYNALLDVYGKSRRSK 323
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ LQ+M+ +G P S+ TYNS++++
Sbjct: 324 EAMEVLQEMEGNGCPPSIVTYNSLISA 350
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 17/139 (12%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+RGF LN +V S+Y +RQ + +A +++ M+ G PS
Sbjct: 614 QRGFSPDITTLNAMV----SIYGRRQMVA-------------KANEILDCMKRGGFTPSL 656
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y ++Y Y R E E I+ ++ + G R D + N V+ +Y + + L +
Sbjct: 657 TTYNSLMYMYSRSANFERSEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSE 716
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M++SG + TYN+ + S
Sbjct: 717 MRESGPAPDIITYNTFIAS 735
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +++EM G PS Y +I Y R GLLED + NQM G + D +L
Sbjct: 324 EAMEVLQEMEGNGCPPSIVTYNSLISAYARDGLLEDALELKNQMVEKGIKPDVFTYTTLL 383
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
S + + V ++M++ G ++ T+N+++
Sbjct: 384 SGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALI 418
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
+E ++ E+ KG+ P Y +IY Y R G + D R++++M G D + N ++
Sbjct: 675 SEEILREILAKGIRPDIISYNTVIYAYCRNGRMRDASRVLSEMRESGPAPDIITYNTFIA 734
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
SY + + + M G + TYNS+++
Sbjct: 735 SYAADSMFVEAIDVVCYMIKHGCKPNQSTYNSIVD 769
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 61/121 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++SG + G+ A + EEMR +G +P+ + +I +G G +M ++ +++
Sbjct: 381 TLLSGFEKAGKDKAAVQIFEEMRNEGCKPNICTFNALIKMHGNRGKFTEMMKVFEDIKTF 440
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
D V N +LS +G + S + ++MK +G T+N++++S S S Q
Sbjct: 441 QCSPDIVTWNTLLSVFGQNGMDSEVSGVFKEMKRAGFVPERDTFNTLISSYSRCGSFDQA 500
Query: 314 L 314
+
Sbjct: 501 M 501
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS L + G+ A +L+ + G + + Y +I + G + + +ME G
Sbjct: 171 IISILGKGGRVSAAASLLHNLCKDGFDVDVYAYTSMITAFTSNGRYREAVMVFKKMEEVG 230
Query: 255 TRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ + N++L+ YG ++MV + +MK +GI TYN++++ C
Sbjct: 231 CKPTLITYNVILNVYGKMGMPWNKMVGLVDRMKSAGIAPDSYTYNTLISCC 281
>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 498
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 8/165 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +E +T + + K G + V+ YC+L+D +C + + + Q
Sbjct: 260 KDGKMKEGKT-VFAMMMKQGIKPN--VVTYCSLMDGYCLVKQVNKANSIFNTMAQ----- 311
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ MI+G C++ + EA NL ++M K + P+ Y +I G + G +
Sbjct: 312 GGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISY 371
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++V++M G D + + +L + ++++ + + L K+KD
Sbjct: 372 ALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKD 416
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI+ CK R R++ +LV + +Y ++I +C++ +EA +
Sbjct: 146 YGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMY------NTIIDSMCKVKLVNEAFD 199
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM +G+ P Y +I G+ +G L+D + N+M + + D N+++ +
Sbjct: 200 LYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFC 259
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ M GI +V TY S+++
Sbjct: 260 KDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDG 292
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 67/150 (44%), Gaps = 7/150 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
L+D FCK + +A + Q + + Y S++ G C + Q ++A ++
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYC------SLMDGYCLVKQVNKANSIFN 307
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
M G+ P Y +I G+ ++ +++ + +M + V ++
Sbjct: 308 TMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSG 367
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++S + + +M D G+P + TY+S+L++
Sbjct: 368 KISYALKLVDEMHDRGVPPDIITYSSILDA 397
>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
and contains a RepB PF|01051 protein and multiple PPR
PF|01535 repeats [Arabidopsis thaliana]
Length = 613
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 304 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 359
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 360 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 414
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G + G + ++I +M SDG D + +++L + +L + ++ +
Sbjct: 415 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 474
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 475 LQKSKMEPDIYTYN 488
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y +I G+ R GL E+ + + +M+ DG
Sbjct: 490 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 549
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T ++ N ++ + + + +++M+ G T + V+N
Sbjct: 550 TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 597
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I GL + EA LI+ M +G +P F Y ++ G + G ++ ++ +ME
Sbjct: 172 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 231
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V ++ + ++ ++ + +M + GI +V TYNS++
Sbjct: 232 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 281
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLN- 176
+++L+ L K G E+ LV+F Y +I+ CK D + L+
Sbjct: 453 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 512
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V + +Y +MISG C G EA+ L EM+ G P+ Y +I R
Sbjct: 513 KGVKPNVIIYT------TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 566
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
G ++ +M S G D +MV++ D
Sbjct: 567 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 601
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ + LID+F K ++++ +D+ R S+ S+I+G C +
Sbjct: 309 VVTFSALIDAFVKEGKLVEAEKLYDEMIKR---------SIDPDIFTYSSLINGFCMHDR 359
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA+++ E M K P+ Y +I G+ + +E+ + +M G +TV N
Sbjct: 360 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 419
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +KM G+P + TY+ +L+
Sbjct: 420 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 458
>gi|414865591|tpg|DAA44148.1| TPA: hypothetical protein ZEAMMB73_616668 [Zea mays]
Length = 838
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 107/252 (42%), Gaps = 45/252 (17%)
Query: 12 PWNSRCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQF 71
PW C + QQ CL+ R+T+ Q L L D I + A
Sbjct: 540 PWIKNCTDMVQQ-----LCLSGRITEALQFLDGMLELGFLPD-------IVTYSA----- 582
Query: 72 IALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE--IIAFLDKQGQREE 129
A+N + + + A L++ I+ + + P +VA +I K G+ +E
Sbjct: 583 -AMNGMCKVGDIEN--------ALGLFLDISSKCYL---PDVVAHNILINGFRKAGKFDE 630
Query: 130 AETLILETLSK--LGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVY 186
A+ ++ E LSK L S V+ Y +ID +CK S + Y +++ + Y
Sbjct: 631 AQEIMEEMLSKGMLPS-----VVTYNLMIDIWCKSGSIDKAITCVYKMIDEEKPPTVVTY 685
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
S++ GLC G+P EA L +MR KG P+G Y ++ G + G +E
Sbjct: 686 T------SLLDGLCNAGRPDEAIVLWCKMREKGCSPNGIAYTALVNGLCKCGRMETAVNY 739
Query: 247 VNQMESDGTRVD 258
+M++ G +D
Sbjct: 740 YEEMKTKGFDLD 751
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 62/295 (21%), Positives = 111/295 (37%), Gaps = 67/295 (22%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D+ K +D ARL ++V + V R L S++ C G+P +A +
Sbjct: 174 YNCLLDALAKAGRA---EDAEARLQEMVVTCGDESVDRYTLTSLLQCYCNAGRPEDASAV 230
Query: 212 IEEM--------------------------------RVKGLE--PSGFEYKCIIYGYGRL 237
++ M R++ L+ P+ +++G R
Sbjct: 231 LQRMSKRAWVDEHVLTMLIVAYSKWGKVEDAVELLGRMEALDMRPNEKTLSVLVHGLARQ 290
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++ + +M S G VD ++++ NE+ + V + MK I VR
Sbjct: 291 GRVDVAMNMFGKMASYGFSVDLAMYSVLIEGLCHGNEMGKAVKLFEDMKRDRITPDVRLL 350
Query: 298 NSVLNS-C-----STIMSMLQDLNSNDFPLSILELTEV-----LNEEEVSVVKELEDSSV 346
++ + C ST+ + + + P S + L V +N EV +L S V
Sbjct: 351 KKIIEAFCRQGDFSTVGPFINENAVHLKPGSAVLLYNVILDGLINHGEVEAAYQLLSSMV 410
Query: 347 LDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCG 401
+ D + D G+H+ F+I + + + FN VVCG
Sbjct: 411 -----RGDQRVSDDDTVGVHI----FVITEDVKPNSDSFN----------IVVCG 446
>gi|260780506|gb|ACX50799.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780508|gb|ACX50800.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780510|gb|ACX50801.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780512|gb|ACX50802.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780514|gb|ACX50803.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780516|gb|ACX50804.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780518|gb|ACX50805.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780520|gb|ACX50806.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780522|gb|ACX50807.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780524|gb|ACX50808.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780526|gb|ACX50809.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780528|gb|ACX50810.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780530|gb|ACX50811.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780532|gb|ACX50812.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780534|gb|ACX50813.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780536|gb|ACX50814.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780538|gb|ACX50815.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780540|gb|ACX50816.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780542|gb|ACX50817.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780544|gb|ACX50818.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780550|gb|ACX50821.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780552|gb|ACX50822.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780554|gb|ACX50823.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780556|gb|ACX50824.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780560|gb|ACX50826.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780562|gb|ACX50827.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780564|gb|ACX50828.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780566|gb|ACX50829.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780568|gb|ACX50830.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780570|gb|ACX50831.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780572|gb|ACX50832.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780574|gb|ACX50833.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780576|gb|ACX50834.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780578|gb|ACX50835.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780580|gb|ACX50836.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780582|gb|ACX50837.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780584|gb|ACX50838.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780586|gb|ACX50839.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780588|gb|ACX50840.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780590|gb|ACX50841.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780592|gb|ACX50842.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780594|gb|ACX50843.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780596|gb|ACX50844.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780598|gb|ACX50845.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780600|gb|ACX50846.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780602|gb|ACX50847.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780604|gb|ACX50848.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780606|gb|ACX50849.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780608|gb|ACX50850.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780610|gb|ACX50851.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780612|gb|ACX50852.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780614|gb|ACX50853.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780616|gb|ACX50854.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780618|gb|ACX50855.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780620|gb|ACX50856.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780622|gb|ACX50857.1| AT1G03560-like protein [Capsella bursa-pastoris]
gi|260780624|gb|ACX50858.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 85/180 (47%), Gaps = 8/180 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q P + +I L K+G+ E + E + + GS+ V Y LID + K +
Sbjct: 4 QVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKSGN--- 57
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D L+++++ V +++GLC+ G+ EA + + + GL + Y
Sbjct: 58 VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFY 115
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ + ++M++
Sbjct: 116 SSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRMEE 175
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 2 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 61
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 62 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|255548407|ref|XP_002515260.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545740|gb|EEF47244.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 878
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 59/108 (54%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ +C+ GQ A ++ EM K + P+ Y +I GY ++G L+D + N+M+
Sbjct: 336 TLLDAVCKGGQMDLAFEIMSEMPTKNILPNVVTYSTMIDGYAKVGRLDDALNMFNEMKFL 395
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D V N +LS Y + + ++M+++GI V TYN++L
Sbjct: 396 GVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALL 443
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 72/154 (46%), Gaps = 5/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y L+D+ CK D + ++++ + ++ +MI G ++G+ +A
Sbjct: 331 IFTYNTLLDAVCKGGQ---MDLAFEIMSEM--PTKNILPNVVTYSTMIDGYAKVGRLDDA 385
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
N+ EM+ G+ Y ++ Y +LG E + +ME+ G R D V N +L+
Sbjct: 386 LNMFNEMKFLGVGLDRVSYNTLLSVYAKLGRFEQALDVCKEMENAGIRKDVVTYNALLAG 445
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
YG + ++MK + ++ TY+++++
Sbjct: 446 YGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLID 479
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/308 (21%), Positives = 120/308 (38%), Gaps = 87/308 (28%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG--------------- 238
++I LC+ G + L++EM +G+ P+ Y II +GR
Sbjct: 511 ALIDALCKNGLVESSVTLLDEMTKEGIRPNVVTYNSIIDAFGRSASAQCVVDDSGETTAL 570
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYG-------------DHNELSRMVLWLQKM 285
+E + IV Q + D N ++ +G E+ ++ QKM
Sbjct: 571 QVESLSSIVVQEAIESQAADKE-DNRIIEIFGKLAAEKACEAKNSGKQEILCILGVFQKM 629
Query: 286 KDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKEL---- 341
+ I +V T++++LN+CS S +D + +LE + + + V L
Sbjct: 630 HELKIKPNVVTFSAILNACSRCDS-FEDASM------LLEELRLFDNQVYGVAHGLLMGY 682
Query: 342 ------EDSSVLDEA-----------------MKWDSGETK------------------- 359
+ S+ DE M W G+ +
Sbjct: 683 RENVWLQAQSLFDEVKLMDSSTASAFYNALTDMLWHFGQKRGAQLVVLEGKRRQVWENIW 742
Query: 360 ----LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVK 415
LDLH M G+A ++ W+ +R+ E H +P ++++ G GKHS V G+S+++
Sbjct: 743 SDSCLDLHLMSSGAARAMVHAWLLNIRS-IVFEGHELPKLLSILTGWGKHSKVVGDSALR 801
Query: 416 AMVKKMMV 423
V+ +++
Sbjct: 802 RAVEALLI 809
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L +G+ A+ + + +G + + + +I YGR G + ++ + M+S+
Sbjct: 195 AMISTLGRLGKVELAKAVFDTALKEGYGKTVYAFSALISAYGRSGYCNEAIKVFDSMKSN 254
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + V N V+ + G E ++V M +G+ T+NS+L CS
Sbjct: 255 GLMPNLVTYNAVIDACGKGGVEFKKVVEIFDGMLSNGVQPDRITFNSLLAVCS 307
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%), Gaps = 5/116 (4%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMERIVNQ 249
A ++IS G +EA + + M+ GL P+ Y +I G+ G+ + + I +
Sbjct: 227 AFSALISAYGRSGYCNEAIKVFDSMKSNGLMPNLVTYNAVIDACGKGGVEFKKVVEIFDG 286
Query: 250 MESDGTRVDTVCSNMVLS--SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M S+G + D + N +L+ S G E +R + M D GI + TYN++L++
Sbjct: 287 MLSNGVQPDRITFNSLLAVCSRGGLWEAARRLF--SAMVDKGIDQDIFTYNTLLDA 340
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/155 (17%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID + K DD N++ V + R + +++S ++G+ +A
Sbjct: 366 VVTYSTMIDGYAKVGR---LDDALNMFNEM--KFLGVGLDRVSYNTLLSVYAKLGRFEQA 420
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ +EM G+ Y ++ GYG+ +++ R+ +M+ + + + ++
Sbjct: 421 LDVCKEMENAGIRKDVVTYNALLAGYGKQYRYDEVRRVFEEMKRGRVSPNLLTYSTLIDV 480
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + ++ K +G+ V Y++++++
Sbjct: 481 YSKGGLYKEAMEVFREFKQAGLKADVVLYSALIDA 515
>gi|162462150|ref|NP_001105879.1| chloroplast RNA processing1 [Zea mays]
gi|3289002|gb|AAC25599.1| CRP1 [Zea mays]
Length = 668
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + + S + +
Sbjct: 266 VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVRIGSLKNAEQV 321
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 322 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M++ G R D N+++ ++G +N L + KM++ GI
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIE 436
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 437 PDVVTWNTLIDA 448
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M++DG V +
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ M+++G+ V TY +++ +
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM+ G+ P Y +I +G+
Sbjct: 365 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L N+M +G D V N ++ ++ R ++M++S P TYN
Sbjct: 419 CLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYN 478
Query: 299 SVLN 302
++N
Sbjct: 479 IMIN 482
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LID+ CK G D A L + + S+ MI+ L E
Sbjct: 439 VVTWNTLIDAHCKG----GRHDRAAELFEEMRESNCP-PGTTTYNIMINLLGEQEHWEGV 493
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG + + ++++
Sbjct: 494 EAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 553
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + ++ MK G+ S+ NS++N+
Sbjct: 554 YAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588
>gi|115466680|ref|NP_001056939.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|55773690|dbj|BAD72273.1| putative PPR2 [Oryza sativa Japonica Group]
gi|113594979|dbj|BAF18853.1| Os06g0172000 [Oryza sativa Japonica Group]
gi|215697063|dbj|BAG91057.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218197679|gb|EEC80106.1| hypothetical protein OsI_21852 [Oryza sativa Indica Group]
gi|222635046|gb|EEE65178.1| hypothetical protein OsJ_20289 [Oryza sativa Japonica Group]
Length = 511
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 11/221 (4%)
Query: 87 HPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG 142
H R+++L A ++ + ++ W++ + ++I L K Q E A L + +
Sbjct: 132 HERITALRWDSALKVFDLMRDQVWYRPYVGIYVKLITMLGKCKQPERAHELFQAMVDEGC 191
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
+ E Y L+ ++ + FD ++ L Q+ ++ Q +I
Sbjct: 192 APNLE---SYTALVSAYSRSGR---FDRAFSLLEQM-KATPGCRPDVQTYSILIKSCLHA 244
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
+ L+E+M G+ P+ Y +I YG+ G +ME + +M ++ + D
Sbjct: 245 YDFERVKYLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTM 304
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N L ++G ++ M +K + SGI +++TYN +L+S
Sbjct: 305 NSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDS 345
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+++ + G+ + A +L+ + + G R V Y LI S C H +D + R+
Sbjct: 201 LVSAYSRSGRFDRAFSLLEQMKATPGCRPD--VQTYSILIKS-CLH----AYD--FERVK 251
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L+ + ++ + ++I + G+ E E+ + EM + +P + + +
Sbjct: 252 YLMEDMARAGIRPNVVTYNTLIDAYGKAGRFAEMESTLLEMLTENCKPDVWTMNSTLRAF 311
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
G G +E ME + ++ G + N++L SYG +M ++ M+ +++
Sbjct: 312 GGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTI 371
Query: 295 RTYNSVLNS 303
TYN V+++
Sbjct: 372 VTYNVVIDA 380
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 88/199 (44%), Gaps = 17/199 (8%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQA 191
++E +++ G R V+ Y LID++ K F + + L +++ N V+
Sbjct: 253 LMEDMARAGIRPN--VVTYNTLIDAYGKAGR---FAEMESTLLEMLTENCKPDVWT---- 303
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+ S + GQ E+ E+ + G+ P+ Y ++ YG+ + E M ++ M+
Sbjct: 304 MNSTLRAFGGSGQIETMESCYEKFQASGISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQ 363
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CS 305
V N+V+ ++G +L +M + MK I + T S++ +
Sbjct: 364 KYYYSWTIVTYNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSLVRAYGRAGDVK 423
Query: 306 TIMSMLQDLNSNDFPLSIL 324
I ++L+ + ++D L I+
Sbjct: 424 KIKTVLRIVENSDITLDIV 442
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 68/145 (46%), Gaps = 5/145 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D CK +G+ RL + + SSS+ ++ +C+ G +A L
Sbjct: 102 YSILLDGLCK----QGYLGKAFRLFRAM-QSSSLKPDLVMYNILVDAMCKSGNLKDAREL 156
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E+ VKGL+P+ Y II G + GLL++ ME DG D N+++ +
Sbjct: 157 FSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQ 216
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRT 296
H + SR V + +M+D G V T
Sbjct: 217 HKDESRAVHLIGEMRDRGFIADVGT 241
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LI+ +CK D N+++ + + ++I GLC++G+ EA
Sbjct: 29 VFCYNILINGYCKATR---IDKAKQLYNEMI--LQGLTPDKVTYNTLIHGLCQLGRLREA 83
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++L + M G P F Y ++ G + G L R+ M+S + D V N+++ +
Sbjct: 84 QDLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDA 143
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L ++ G+ +V+ Y +++N
Sbjct: 144 MCKSGNLKDARELFSELFVKGLQPNVQIYTTIING 178
>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
Length = 552
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G+ + AE ++ + + G+ + LV F ++++ CK G + +
Sbjct: 51 LVAAFCRAGELDGAERVV-SLMREEGNAKPNLVTFN-SMVNGLCKAGRMEGARKVF---D 105
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V + V + +++SG C++G HE+ + EM +GL P + +I+ +
Sbjct: 106 EMVREGLAPDV--VSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCK 163
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE +V QM G R++ V ++ + L +L +++M+ GI SV
Sbjct: 164 AGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVC 223
Query: 297 YNSVLNS 303
YN+++N
Sbjct: 224 YNALING 230
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G +A +EEMR G++PS Y +I GY +LG ++ ++ +ME+
Sbjct: 191 ALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAK 250
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL----------NS 303
+ D V + ++S Y L QKM G+ TY+S++ ++
Sbjct: 251 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 310
Query: 304 CSTIMSMLQ 312
C +MLQ
Sbjct: 311 CELFENMLQ 319
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 16/198 (8%)
Query: 113 LVAEIIAFLD------KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
LV +++ F K G E+A L+ + + + G R E+ + LID FCK +
Sbjct: 147 LVPDVVTFTSLIHATCKAGNLEQAVALVAQ-MRERGLRMNEVT--FTALIDGFCK----K 199
Query: 167 GF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
GF DD + ++ + ++I+G C++G+ A LI EM K ++P
Sbjct: 200 GFLDDALLAVEEM--RKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVV 257
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y II GY ++G L+ ++ +M G D + + ++ + L+ + M
Sbjct: 258 TYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENM 317
Query: 286 KDSGIPFSVRTYNSVLNS 303
G+ TY ++++
Sbjct: 318 LQLGVQPDEFTYTTLIDG 335
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 14/186 (7%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + A LI E +K R + V+ Y +I +CK G D+ +LNQ +
Sbjct: 233 KLGRMDLARELIREMEAK---RVKPDVVTYSTIISGYCK----VGNLDSAFQLNQKM-LK 284
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V S+I GLCE + ++A L E M G++P F Y +I G+ + G +E
Sbjct: 285 KGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEK 344
Query: 243 MERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ ++M G D V +++ LS E R++ L + +P +++ Y++
Sbjct: 345 ALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKL--YHEDPVPDNIK-YDA 401
Query: 300 VLNSCS 305
++ CS
Sbjct: 402 LMLCCS 407
Score = 44.7 bits (104), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC G+ EA ++ +MR G P+ Y ++ + R G L+ ER+V+ M +G
Sbjct: 16 LVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEG 75
Query: 255 -TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V N +++ + +M G+ V +YN++L+
Sbjct: 76 NAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125
>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Cucumis sativus]
Length = 602
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 8/177 (4%)
Query: 127 REEAETLILETLSKLGSRERELVLF-YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSS 184
+E+ +LE + + + R +F Y +I+ FCK+ + + F+ A ++
Sbjct: 274 KEKNHHRVLELVHTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMV 333
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+Y ++I G C+MGQ +A L EM KG P+ + Y +IYG+ ++G L++
Sbjct: 334 MYT------TLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAM 387
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ +M G + T+ N ++ H + ++M I V TYN+++
Sbjct: 388 KLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLI 444
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
K G +EA L + L G +E L CN LI C H D+ Y ++
Sbjct: 379 KIGNLDEAMKLYKKMLDS-GYKETTLS---CNTLILGLCLHGRT---DEAYDFFREM--P 429
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ ++I G C G+ ++ +L++E++ KGL+PS Y +I +LG ++
Sbjct: 430 CKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQ 489
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + N M + G + + ++S + + + WL M S + T+ ++
Sbjct: 490 EAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLI 549
Query: 302 NS 303
S
Sbjct: 550 QS 551
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 62/150 (41%), Gaps = 11/150 (7%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI +FC D+ +R +++ S + A +ISG C+ H L+
Sbjct: 233 LIQAFCN-------DNKVSRAYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELV 285
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
M VK P F Y+ II G+ + + + N ++ G D V ++ +
Sbjct: 286 HTMIVKNRNPDIFTYQEIINGFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKM 345
Query: 273 NELSRMV-LWLQKMKDSGIPFSVRTYNSVL 301
+L LW + M D G + +YN+++
Sbjct: 346 GQLEDASKLWFE-MIDKGFLPNEYSYNTLI 374
>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
Length = 629
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 320 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 375
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 376 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G + G + ++I +M SDG D + +++L + +L + ++ +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 491 LQKSKMEPDIYTYN 504
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y +I G+ R GL E+ + + +M+ DG
Sbjct: 506 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T D+ C N ++ + + + +++M+ G T + V+N
Sbjct: 566 TLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 77/171 (45%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + KLG E ++V +L++ +C SKR D A ++Q+V
Sbjct: 137 VLGKMMKLG-YEPDIVTL-SSLLNGYCH--SKR-ISDAVALVDQMVEMGYKP--DTVTFN 189
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL + EA L+++M +G +P Y ++ G + G ++ ++ +ME
Sbjct: 190 TLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKG 249
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V N ++ + + KM+ GI V TYNS++ SC
Sbjct: 250 KIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLI-SC 299
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A ++ +M G EP ++ GY + D +V+QM G
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ DTV N ++ HN+ S V + +M G + TY +V+N
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNG 229
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ + LID+F K ++++ +D+ R S+ S+I+G C +
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKR---------SIDPDIFTYSSLINGFCMHDR 375
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA+++ E M K P+ Y +I G+ + +E+ + +M G +TV N
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +KM G+P + TY+ +L+
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLN- 176
+++L+ L K G E+ LV+F Y +I+ CK D + L+
Sbjct: 469 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V + +Y +MISG C G EA+ L EM+ G P Y +I R
Sbjct: 529 KGVKPNVIIYT------TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 582
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
G ++ +M S G D +MV++ D
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ +A L +M KG+ P F Y +I G D R+++ M
Sbjct: 260 TIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIER 319
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ +L +M I + TY+S++N
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 369
>gi|224064580|ref|XP_002301519.1| predicted protein [Populus trichocarpa]
gi|222843245|gb|EEE80792.1| predicted protein [Populus trichocarpa]
Length = 718
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ +C+ GQ A ++ EM K + P+ Y +I GY + G L+D + N+M+
Sbjct: 223 TLLDAVCKGGQLDMAFEIMSEMPAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFL 282
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V N +LS Y + ++M++SGI V TYN++L
Sbjct: 283 GISLDRVSYNTLLSIYAKLGRFEEAMDVCREMENSGIRKDVVTYNALLGG 332
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 87/186 (46%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A K G E A +L E +++ ++ + Y L+D+ CK D + ++
Sbjct: 189 LLAVCSKGGLWEAARSLSCEMVNRGIDQD---IFTYNTLLDAVCKGGQ---LDMAFEIMS 242
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + ++ +MI G + G+ +A NL EM+ G+ Y ++ Y +
Sbjct: 243 EM--PAKNILPNVVTYSTMIDGYAKAGRLDDARNLFNEMKFLGISLDRVSYNTLLSIYAK 300
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LG E+ + +ME+ G R D V N +L YG + + ++MK + ++ T
Sbjct: 301 LGRFEEAMDVCREMENSGIRKDVVTYNALLGGYGKQYKYDVVRKVFEEMKARHVSPNLLT 360
Query: 297 YNSVLN 302
Y+++++
Sbjct: 361 YSTLID 366
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L +G+ A+ + + +G + + + II YGR G + +I M+
Sbjct: 82 AMISTLGRLGKVEMAKTVFKAALTEGYGNTVYAFSAIISAYGRSGYCNEAIKIFYSMKDY 141
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + + V N V+ + G E R++ +M +G+ T+NS+L CS
Sbjct: 142 GLKPNLVTYNAVIDACGKGGVEFKRVLEIFDEMLRNGMQPDRITFNSLLAVCS 194
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 147 ELVLFYCNLIDSFCKHDSKRGFD---DTYARLNQLVNSSS------SVYVKRQ--ALKSM 195
E FY L+D+ ++K F+ RL +L ++ + S V+R + +M
Sbjct: 223 EACAFYLQLLDAGLPPEAKL-FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTM 281
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
ISG+C G AE L M G+ P + Y +I G R+G +ED + +M G
Sbjct: 282 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 341
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V +++ ++ + M+ ++M++ G+ TYN+++N
Sbjct: 342 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNG 389
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID +CK + D + Q + + V + ++ISGL + G+ +AE +
Sbjct: 418 YTTLIDGYCKEEEL----DMAMEIKQNM-VAEGVGLDEVTYTALISGLSKAGRSADAERV 472
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM GLEP Y +I + R G ++ R++ +M++ G + V N++++ +
Sbjct: 473 LGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCK 532
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + L M + G+ TYN +L+
Sbjct: 533 LGQMKNADMLLNAMINIGVSPDDITYNILLDG 564
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 57/252 (22%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAE--TLILETLSKLG-------------SRE-REL 148
S F P+ A + LD G EA+ +++ L +LG SR R
Sbjct: 216 SRFPTAPEACAFYLQLLD-AGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRT 274
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +I C+ G + + R+++ + VY ++I GLC +G+ +A
Sbjct: 275 VVSFNTMISGMCRAGDLDGAETLHRRMSE-AGVTPDVYT----YGALIQGLCRVGRIEDA 329
Query: 209 ENLIE-----------------------------------EMRVKGLEPSGFEYKCIIYG 233
+ E EMR +G+ P Y I+ G
Sbjct: 330 RGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNG 389
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
R L+ IV +M S G R DTV ++ Y EL + Q M G+
Sbjct: 390 LCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLD 449
Query: 294 VRTYNSVLNSCS 305
TY ++++ S
Sbjct: 450 EVTYTALISGLS 461
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 43/224 (19%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I L + G+ E+A + E + G + +V + LID+ CK +G +T
Sbjct: 314 GALIQGLCRVGRIEDARG-VFEKMCGRGMKPNAVV--FTILIDAHCK----KGDAETMLE 366
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L++ + V ++++GLC A ++ EMR GL P Y +I GY
Sbjct: 367 LHREMRERG-VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 425
Query: 235 GR------------------LGLLE-----------------DMERIVNQMESDGTRVDT 259
+ +GL E D ER++ +M G D
Sbjct: 426 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 485
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
MV+ ++ ++ + L++M++ G V TYN ++N
Sbjct: 486 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 529
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYARL 175
+I+ L K G+ +AE ++ E + + Y +ID+FC K D K G L
Sbjct: 456 LISGLSKAGRSADAERVLGEMMEAGLEPDNTT---YTMVIDAFCRKGDVKTGL----RLL 508
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ N V +++G C++GQ A+ L+ M G+ P Y ++ G+
Sbjct: 509 KEMQNKGRKPGV--VTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 566
Query: 236 RLGLLEDMERI 246
+ G + D+E +
Sbjct: 567 KHGKVTDIEEL 577
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + NLI+ +C + FDD N+++ SS + Q +I+ L + + EA
Sbjct: 277 VVTFTNLINGYCMAEK---FDDALRMKNKMM--SSKCKLDLQVFGKLINSLIKKDRLKEA 331
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L+ E+ GL P+ Y II GY + G ++ ++ ME DG + + N ++
Sbjct: 332 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 391
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L KM+ GI +V TY ++L
Sbjct: 392 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQG 426
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 14/213 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L+ + E++ + + A + L K G+ EEA + I+ L ++Y
Sbjct: 436 AFRLF-EMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTK------VYYT 488
Query: 154 NLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LID F SK G D A L ++++ + ++ LC+ + +EA ++
Sbjct: 489 TLIDGF----SKAGNTDFAATLIERMIDEGCTP--DSYTYSVLLHALCKQKRLNEALPIL 542
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M ++G++ + F Y +I R G + +R+ N+M S G + + ++SY
Sbjct: 543 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 602
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L + KM+ G+ V TYN +++ C
Sbjct: 603 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 635
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +ISGLC+ G+ +A L + M G+ PS Y +I GY +LG + D +I
Sbjct: 174 RAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKEL 233
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME +G D N ++ D L +K+ P +V T+ +++N
Sbjct: 234 MEKNGCHPDDWTYNTLIYGLCDQKTEEAEELLNNAVKEGFTP-TVVTFTNLING 286
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 1/110 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE L+ +G P+ + +I GY +D R+ N+M S
Sbjct: 248 TLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSS 306
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++D +++S + L L ++ +G+ +V TY S+++
Sbjct: 307 KCKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDG 356
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVN----SSSSVYVKRQALKSMISGL--------- 199
C L+DSF K+ GFD + L+N S ++ Y+ LK ++S +
Sbjct: 383 CELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDC 442
Query: 200 -CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G +AE +++EM+ KG P+ + +I GY +LG + + + ++ + G D
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 502
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++ + ++L + ++M + G+ + +TYN ++++ CS
Sbjct: 503 IITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
C L++S+ + R + + ++ +L + S++VY ++I+ G A
Sbjct: 157 CALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVY------NALIAASVRAGAVDTAYLR 210
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME +G R + M++ + +
Sbjct: 211 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L KMK+ G+ S TY ++++
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S+I GLC Q +A EEM G+ P+ Y +++ G + ++N+M+
Sbjct: 506 FTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMK 565
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DG D N ++ S+ ++ + M G+ TYNS++ +
Sbjct: 566 IDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKA 617
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 19/189 (10%)
Query: 152 YCNLIDSFCKHDSKRGFD---DTYARLNQLVNSSSS-VYVKRQALKSMISGLCEMGQPHE 207
YC+LID+ K +KR +D + + L + SSS+ VY MI L + G+ +
Sbjct: 1434 YCSLIDALGK--AKR-YDLACELFQELKENCGSSSARVYA------VMIKHLGKAGRLDD 1484
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A N+ +EM G P + Y ++ G R G+L++ + +M+ G D N++L+
Sbjct: 1485 AINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILN 1544
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPL 321
R + L MK S + V +YN+VL + S +++++N+ F
Sbjct: 1545 GLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEY 1604
Query: 322 SILELTEVL 330
++ + +L
Sbjct: 1605 DLITYSSIL 1613
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +GQ E+ L E +S G + V Y LI +FCK + D LN
Sbjct: 1190 MIIMLMHEGQYEKVHQLYNE-MSTEGHCFPDTVT-YSALISAFCKLGRR---DSAIQLLN 1244
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ + ++ +Y +I+ + H A +L EEMR + P F Y +I
Sbjct: 1245 EMKEIGMQPTTKIYTM------LIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIR 1298
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G+ G +++ +M+ +G R DTV N +++ G L + Q+M+
Sbjct: 1299 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 1358
Query: 293 SVRTYNSVLNS 303
SV TYN+++ +
Sbjct: 1359 SVVTYNTIIKA 1369
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 82/209 (39%), Gaps = 16/209 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + + A L E GS + Y +I KH
Sbjct: 1423 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV---YAVMI----KH 1475
Query: 163 DSKRG-FDDT---YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
K G DD + +N+L + VY A +++SGL G EA + + M+
Sbjct: 1476 LGKAGRLDDAINMFDEMNKL-GCAPDVY----AYNALMSGLARTGMLDEALSTMRRMQEH 1530
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G P Y I+ G + G +++ M+ R D V N VL +
Sbjct: 1531 GCIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEA 1590
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++M G + + TY+S+L + +
Sbjct: 1591 SKLMKEMNTLGFEYDLITYSSILEAIGKV 1619
>gi|255538774|ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551153|gb|EEF52639.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1218
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 73/140 (52%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++ISG C+ GQ EA+ L + MR +G+EP + +I GY +LG + ++ +M
Sbjct: 242 AWNALISGYCQHGQIEEAQRLFDAMREEGIEPGLVSWNILIAGYNQLGYFDIAMELMKKM 301
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
E GT D V ++S +++ S+ + M + + + T +S +++C+++ +
Sbjct: 302 EVLGTSPDVVTWTSMISGLAQNDKASKALHLFNDMILARVEPNGVTISSAVSACASLKVL 361
Query: 311 LQDLNSNDFPLSILELTEVL 330
+ L + + + + +VL
Sbjct: 362 NEGLEIHALAVKLGFVEDVL 381
Score = 45.1 bits (105), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI G C++G +A L +M+ +P+ + +I+GY G + + +ME D
Sbjct: 416 SMIGGYCQVGYCGKAHMLFMKMQKSETQPNAITWNNMIWGYIHNGDEDQAMDLFRRMEED 475
Query: 254 G-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G + DT N ++S Y + + + ++M+ I + T SVL +C+ ++++
Sbjct: 476 GKIKRDTASWNSLISGYLQIGQKDKALSIFRQMQSFSININSVTILSVLPACANLIAL 533
>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
Length = 410
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 55/107 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C G+ A L +EM VKG+ + Y +I G R L+D ++ M +G
Sbjct: 114 LIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREG 173
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
R V N+++ YG +++ + + +MK +G+P SV TYN ++
Sbjct: 174 IRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTYNELI 220
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC + +A L E MR +G+ PS + +I GYG+ G + + NQM++ G
Sbjct: 149 LIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAG 208
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V N ++ + +++R V MK+ G+ + TY ++ +
Sbjct: 209 LPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAA 257
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G G L EMR G+EP+ + Y C+I + R G + + ++M
Sbjct: 78 ALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVK 137
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTI 307
G + V N++++ H++L V + M+ GI S+ T+N +++ +
Sbjct: 138 GVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANA 197
Query: 308 MSMLQDLNSNDFPLSILELTEVL 330
+ + + P S++ E++
Sbjct: 198 LHFFNQMKAAGLPPSVVTYNELI 220
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +F K + D + L+++ + V V Q+ ++ LC G+ A L
Sbjct: 251 YTILIAAFAKENE---MDRAFMMLSEMEKAGLEVDV--QSYGVLLHALCMEGKMMHARKL 305
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ M +KG++P+ Y +IYGYGR G R++ +M +G
Sbjct: 306 FQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALRLIMEMRKNG 348
>gi|414887034|tpg|DAA63048.1| TPA: crs2 associated factor1 [Zea mays]
Length = 617
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + + S + +
Sbjct: 266 VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVRIASLKNAEQV 321
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 322 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M++ G R D N+++ ++G +N L + KM++ GI
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIE 436
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 437 PDVVTWNTLIDA 448
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM+ G+ P Y +I +G+
Sbjct: 365 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L N+M +G D V N ++ ++ R ++M++S P TYN
Sbjct: 419 CLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYN 478
Query: 299 SVLN 302
++N
Sbjct: 479 IMIN 482
>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g22470, mitochondrial-like [Glycine max]
Length = 468
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 25/263 (9%)
Query: 47 ALAVTRDSKAASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
L T +++ A +L+ ++ P + +A+ L D +L + A+ LY +
Sbjct: 124 GLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKD----KLVNEAYDLYSEMDAR 179
Query: 105 SWF----QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
F +N + A +A GQ A +L+ E + K + + V + LID+ C
Sbjct: 180 EIFPNVITYNTLICAFCLA-----GQLMGAFSLLHEMILKNINPD---VYTFSILIDALC 231
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
K + K +A + VN + Y MI+GLC+ + EA NL+ EM K +
Sbjct: 232 K-EGKNAKQIFHAMVQMGVNPNVYSY------NIMINGLCKCKRVDEAMNLLREMLHKNM 284
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P Y +I G + G + ++N+M G D V +L + + L +
Sbjct: 285 VPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATA 344
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
KMK+ GI ++ TY ++++
Sbjct: 345 LFMKMKERGIQPTMYTYTALIDG 367
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 71/151 (47%), Gaps = 23/151 (15%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ---------ALKSMISGL 199
V+ Y +L+D+ CK NQ ++ ++++++K + ++I GL
Sbjct: 323 VVTYTSLLDALCK--------------NQNLDKATALFMKMKERGIQPTMYTYTALIDGL 368
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C+ G+ A+ L + + VKG + Y +I G + G+ ++ I ++ME +G +
Sbjct: 369 CKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNA 428
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
V +++ S + +E + L +M G+
Sbjct: 429 VTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 459
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ-----ALKSMISGLCEMGQPH 206
Y +LID CK R+ +N + ++ + Q S++ LC+
Sbjct: 291 YNSLIDGLCKS----------GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLD 340
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L +M+ +G++P+ + Y +I G + G L++ + + + G +D +++
Sbjct: 341 KATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMI 400
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
S + KM+D+G IP +V T+ ++ S
Sbjct: 401 SGLCKEGMFDEALAIKSKMEDNGCIPNAV-TFEIIIRS 437
>gi|110289270|gb|ABG66143.1| expressed protein [Oryza sativa Japonica Group]
gi|125575153|gb|EAZ16437.1| hypothetical protein OsJ_31906 [Oryza sativa Japonica Group]
Length = 829
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++I GLC++G EA +L E + +G+E Y +I GY LGL +++ +I+
Sbjct: 307 RYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ 366
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G D V ++++ + + ++ + + + D G+ ++ TY+ +LN+
Sbjct: 367 MMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNA 421
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S LC G A++ + M GL P + + +I+G ++G +E+ + ++ +G
Sbjct: 278 LMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEG 337
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCST---- 306
++ V N +++ Y G E+ +++ Q M+ G+ + TY ++ C +
Sbjct: 338 MELEIVTYNSLINGYRLLGLTKEIPKII---QMMRGQGVEPDLVTYTILIAGHCESGDVE 394
Query: 307 -IMSMLQDLNSNDFPLSILELTEVLN 331
M + +D+ L+I+ + +LN
Sbjct: 395 EGMKVRKDVLDQGLQLNIVTYSVLLN 420
>gi|15231338|ref|NP_187348.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75186627|sp|Q9M907.1|PP217_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g06920
gi|6728999|gb|AAF26996.1|AC016827_7 hypothetical protein [Arabidopsis thaliana]
gi|332640955|gb|AEE74476.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 871
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A + + L S R + Y +LI +F H K +D +
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLD---SDCRTNSIVYTSLIKNFFNHGRK---EDGHKIYK 506
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++N + S + Q L + + + + G+P + + EE++ + P Y +I+G +
Sbjct: 507 DMINQNCSPDL--QLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIK 564
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N+V+ + ++++ L++MK G +V T
Sbjct: 565 AGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT 624
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 625 YGSVIDGLAKI 635
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 62/114 (54%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +I G C+ G+ ++A L+EEM+ KG EP+ Y +I G ++ L++ + +
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S ++ V + ++ +G + L L+++ G+ ++ T+NS+L++
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC++ + ++A +EM+ +G++PS Y +I G + G + + + ++ +++G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ C N ++ + N ++ + G+P +T +L++
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDT 841
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P F A L S H S + L+ ++ +E ++ L +I K+G+ +
Sbjct: 166 PAFSAYTTLIGAFSA-VNH---SDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVD 220
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
A +L+ E K S + ++VL Y IDSF K D + +++ ++ +
Sbjct: 221 SALSLLDEM--KSSSLDADIVL-YNVCIDSFGKVGK---VDMAWKFFHEI--EANGLKPD 272
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
SMI LC+ + EA + E + P + Y +I GYG G ++ ++
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + G+ + N +L+ ++ + ++MK P ++ TYN +++
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILID 385
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 590 YNIVIDGFCKCGK---VNKAYQLLEEMKTKGFEPTVVTYG--SVIDGLAKIDRLDEAYML 644
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + K +E + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ ++ Q MK+ + TY ++N
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILING 736
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 130 AETLILETLSKLGSRERELVLF-------------YCNLIDSFCKHDSKRGFDDTYARLN 176
A IL L K+G + L +F Y LID C+ G DT L
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRA----GKLDTAFELR 400
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ + ++ + + M+ LC+ + EA + EEM K P + +I G G+
Sbjct: 401 DSM-QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+G ++D ++ +M R +++ ++ ++ +H
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 116 EIIAFLDKQGQREEAET--LILETLSKLGS--------REREL------VLFYCNLIDSF 159
E+ + +G + +A T +++ L KLG RE E V+ Y ++ SF
Sbjct: 316 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 375
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK+ +DDT A L ++ S+ + + Q MI LC+ G+ EA LI+EMR +G
Sbjct: 376 CKNGM---WDDTRALLEEM--SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG 430
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y IIY +E+ E + + +G + + N ++ + V
Sbjct: 431 CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAV 490
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
++M G V +YN + I +M +D N D L +LE
Sbjct: 491 RLAKEMILHGCSLDVVSYNGL------IKAMCKDGNV-DRSLVLLE 529
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ C+ R D+ A L ++ + ++ ++I G G+ EA
Sbjct: 264 VMTYGFLLQGLCR---VRQADEARAMLGRVPELNVVLF------NTVIGGCLAEGKLAEA 314
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E M +KG +P Y +++G +LG + R++ +ME G + V +VL S
Sbjct: 315 TELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHS 374
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L++M G+ + + YN ++
Sbjct: 375 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 407
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 134 ILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKR-GFDDTYARLNQL 178
+++ + K G+ +R LVL Y LI CK R + + LNQ
Sbjct: 511 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 570
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ Y ++I+GLC+MG H A NL+E++ + + P Y +I + ++
Sbjct: 571 LAPDIVTY------NTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVR 624
Query: 239 LLEDMERIVNQ 249
LL+D ++N+
Sbjct: 625 LLDDAAMLLNR 635
>gi|326497659|dbj|BAK05919.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 523
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
S AF + + E + P LV + ++ L + G+ +EA L + K +L
Sbjct: 225 SETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQL 284
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--------LKSMISGLC 200
Y +ID FC RL Q+ + + R+ ++I+G C
Sbjct: 285 T--YNVIIDGFC-------------RLGQVEKARTIFGFMRKNECEPNAFNYATLINGHC 329
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G A+ + EEMR G+EP Y +I R G +++ +V +M G + D V
Sbjct: 330 KKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVV 389
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
N++L ++ ++ L ++ + G+ +V +Y V+N+ CS+
Sbjct: 390 TYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 436
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-Y 152
AF L+ + E+ + II + GQ E+A T+ + E E F Y
Sbjct: 266 AFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTI----FGFMRKNECEPNAFNY 321
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI+ CK D A+L S+ V + ++I LC G E +L+
Sbjct: 322 ATLINGHCKKG-----DVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLV 376
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EMR KG + Y ++ G + G + ++ ++ ++ +G +++ +V+++
Sbjct: 377 MEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 436
Query: 273 NELSRMV 279
++ + V
Sbjct: 437 GDMEKAV 443
>gi|357150350|ref|XP_003575429.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Brachypodium distachyon]
Length = 684
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 77/169 (45%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV----YVKRQALKSMISGL--------- 199
C L+D F K GFD + L+ SS Y+KR L ++SG+
Sbjct: 371 CGLLDDFVKKGGNPGFDVYIMVIKSLLGCKSSSKANHYLKRMVLDGLLSGVTSYNMVIDC 430
Query: 200 -CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G +A +I+EMR KG+ P+ + +I GY +LG + + + ++ + G D
Sbjct: 431 FVKAGAVDKAAEIIKEMREKGVLPNLVTFNTLISGYSKLGNVHNAKAVLKMLMEHGLIPD 490
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ +++ ++L +M + G+ + TYN ++++ CS
Sbjct: 491 IITFTSLINGLCHTHQLDDAFDCFNEMAEWGVRPNAHTYNVLMHALCSA 539
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 21/216 (9%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
+ EE WF P+L +E A + + G R ++ L + L + F
Sbjct: 48 LAEEDWF---PRLNSEFAAAMPRLGPR-----FVVRVLRGAAPLDPHLCVRLYVWASRFG 99
Query: 161 KHDSK-----RGFDDTYARLNQLVNSSSSVY--------VKRQALKSMISGLCEMGQPHE 207
H ++ R +D R V S++ V V + L+++I+ +G
Sbjct: 100 AHFARDASVRRALEDALWRRGPAVLSAALVAEVRGCGCEVSEELLRALIASWGRLGLAQY 159
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A + +M GL PS Y +I R G ++ QM +DG + D N ++
Sbjct: 160 AHEVFVQMPRLGLRPSTAVYNALIVASVRAGAVDTAYLRFQQMPADGCQPDCFTYNTLVH 219
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +++M+ +GI +V TY +++
Sbjct: 220 GVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDG 255
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 45/92 (48%)
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G +P F Y +++G + G++++ R+V QME G R + M++ + +
Sbjct: 199 FQQMPADGCQPDCFTYNTLVHGVCQRGIIDEALRLVRQMEGAGIRPNVFTYTMLVDGFCN 258
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V MK+ G+ + +Y ++++
Sbjct: 259 AGRPEDAVHVFDTMKEKGVSPNEASYRTLVHG 290
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 4/160 (2%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++ISG ++G H A+ +++ + GL P + +I G L+D N+M
Sbjct: 459 FNTLISGYSKLGNVHNAKAVLKMLMEHGLIPDIITFTSLINGLCHTHQLDDAFDCFNEMA 518
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
G R + N+++ + +++ + L KMK GI ++N+ + S + +
Sbjct: 519 EWGVRPNAHTYNVLMHALCSAGHVNKAIDLLNKMKKDGITPDAYSFNAPILSFCRMKKV- 577
Query: 312 QDLNSNDFPLSILELTEVL-NEEEVSVVKELEDSSVLDEA 350
D N F ++L L V N S++K L D +DEA
Sbjct: 578 -DKARNIFN-AMLRLGVVPDNYTYNSLIKALCDERRIDEA 615
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 60/107 (56%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC++G+ A +++EM KG P+ Y +++ + R G+ +D +++QM + G
Sbjct: 357 LMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKG 416
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ N ++ + G +L + +Q+MK G + TYN+++
Sbjct: 417 FSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTII 463
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+ SFC++ +DD A L+Q+ S+ + Q +I L + G+ EA
Sbjct: 386 IVTYSTLLHSFCRNGM---WDDARAMLDQM--SAKGFSMNSQGYNGIIYALGKDGKLDEA 440
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++EM+ +G +P Y IIY +++ E I + +G + + N ++ +
Sbjct: 441 MRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHA 500
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M G P V +YN ++ +
Sbjct: 501 LLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKA 535
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ C+ R D+ YA L ++ V L ++I G G+ A
Sbjct: 285 VVTYGFLLRGLCR---TRQADEAYAMLGRVPE------VNVVMLNTVIRGCLAEGKLARA 335
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E M KG P Y +++G +LG R++++ME G + V + +L S
Sbjct: 336 TELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHS 395
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L +M G + + YN ++
Sbjct: 396 FCRNGMWDDARAMLDQMSAKGFSMNSQGYNGII 428
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++ GLC +G EA L++ M + G PS Y ++ G R ++ ++ ++
Sbjct: 253 FNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVP 312
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV------LNSCS 305
V+ V N V+ +L+R + M G P V TYN + L C
Sbjct: 313 ----EVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCG 368
Query: 306 TIMSMLQDLNSNDFPLSILELTEVLN 331
+ + ML ++ +I+ + +L+
Sbjct: 369 SAVRMLDEMEEKGCAPNIVTYSTLLH 394
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 51/110 (46%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+I LC+ G + L+EEM KG++P+ F Y +I + G + D + +M +
Sbjct: 530 NGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEMLN 589
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D V N +++ + L+K+ + + + TYN +++
Sbjct: 590 QGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILIS 639
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 67/150 (44%), Gaps = 5/150 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI + CK + D + L +++ + + + +I+ LC+ G+ +A
Sbjct: 526 VVSYNGLIKALCKEGN---VDRSMMLLEEMM--TKGIKPNNFSYNMLINELCKAGKVRDA 580
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +EM +GL P Y +I G ++G ++ ++ ++ D V N+++S
Sbjct: 581 LELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISW 640
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+ L + L K GI + RT+
Sbjct: 641 HCKVRLLDDASMLLDKAVSGGIVPNERTWG 670
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/197 (20%), Positives = 80/197 (40%), Gaps = 8/197 (4%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
F N + II L K G+ +EA L+ E S+ G + + Y +I C +D
Sbjct: 417 FSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQ-GCKPD--ICTYNTIIYHLCNNDQMD 473
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + L + V ++I L G+ E L EM + G
Sbjct: 474 EAEHIFGNLLE-----EGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLDVVS 528
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I + G ++ ++ +M + G + + NM+++ ++ + ++M
Sbjct: 529 YNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSKEML 588
Query: 287 DSGIPFSVRTYNSVLNS 303
+ G+ + TYN+++N
Sbjct: 589 NQGLTPDIVTYNTLING 605
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 116 EIIAFLDKQGQREEAET--LILETLSKLGS--------REREL------VLFYCNLIDSF 159
E+ + +G + +A T +++ L KLG RE E V+ Y ++ SF
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSF 391
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK+ +DDT A L ++ S+ + + Q MI LC+ G+ EA LI+EMR +G
Sbjct: 392 CKNGM---WDDTRALLEEM--SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG 446
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y IIY +E+ E + + +G + + N ++ + V
Sbjct: 447 CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAV 506
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
++M G V +YN + I +M +D N D L +LE
Sbjct: 507 RLAKEMILHGCSLDVVSYNGL------IKAMCKDGNV-DRSLVLLE 545
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ C+ R D+ A L ++ + ++ ++I G G+ EA
Sbjct: 280 VMTYGFLLQGLCR---VRQADEARAMLGRVPELNVVLF------NTVIGGCLAEGKLAEA 330
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E M +KG +P Y +++G +LG + R++ +ME G + V +VL S
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHS 390
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L++M G+ + + YN ++
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 134 ILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKR-GFDDTYARLNQL 178
+++ + K G+ +R LVL Y LI CK R + + LNQ
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ Y ++I+GLC+MG H A NL+E++ + + P Y +I + ++
Sbjct: 587 LAPDIVTY------NTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVR 640
Query: 239 LLEDMERIVNQ 249
LL+D ++N+
Sbjct: 641 LLDDAAMLLNR 651
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 50/269 (18%), Positives = 104/269 (38%), Gaps = 22/269 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P F + N + +L+ H + A LY R+ L + G+ +
Sbjct: 137 PSFRSYNVVLSVLARADCH----ADALALYRRMVHRDRVPPTTFTFGVAARALCRLGRAD 192
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA L L +++ G + Y +I + C G + LN+++ + V
Sbjct: 193 EALAL-LRGMARHGCVPD--AVLYQTVIHALCDQG---GVTEAATLLNEMLLMGCAADV- 245
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++ G+C +G+ EA L++ M KG P Y ++ G R+ ++ ++
Sbjct: 246 -NTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLG 304
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV------LN 302
++ ++ V N V+ +L+ + M G TY+ + L
Sbjct: 305 RVPE----LNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLG 360
Query: 303 SCSTIMSMLQDLNSNDFPLSILELTEVLN 331
+ + +L+++ F +++ T VL+
Sbjct: 361 RIGSAVRLLREMEKKGFAPNVVTYTIVLH 389
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVN----SSSSVYVKRQALKSMISGL--------- 199
C L+DSF K+ GFD + L+N S ++ Y+ LK ++S +
Sbjct: 369 CELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDC 428
Query: 200 -CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G +AE +++EM+ KG P+ + +I GY +LG + + + ++ + G D
Sbjct: 429 FVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 488
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++ + ++L + ++M + G+ + +TYN ++++ CS
Sbjct: 489 IITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 537
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%)
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME +G R + M++ + +
Sbjct: 197 FQQMPADGCRPDHFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 256
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L KMK+ G+ S TY ++++
Sbjct: 257 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 288
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ G+C G EA L+ +M +G+ P+ F Y ++ G+ G +E+ R++++M+
Sbjct: 214 SLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCNAGRVEEAFRMLDKMKEK 273
Query: 254 GT 255
G
Sbjct: 274 GV 275
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S+I GLC Q +A EEM G+ P+ Y +++ G + ++N+M+
Sbjct: 492 FTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMK 551
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DG D N ++ S+ ++ + M G+ TYNS++ +
Sbjct: 552 IDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKA 603
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K + + L + SSS+ + MI L + G+ +A N+
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSA-----RVYAVMIKHLGKAGRLDDAINM 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P + Y ++ G R G+L++ + +M+ G D N++L+
Sbjct: 499 FDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAK 558
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK S + V +YN+VL + S +++++N+ F ++
Sbjct: 559 TGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAAKLMEEMNTLGFEYDLIT 618
Query: 326 LTEVL 330
+ +L
Sbjct: 619 YSSIL 623
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 70/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +FCK + D LN++ + K + +I+ ++ H A +L
Sbjct: 233 YSALISAFCKLGRR---DSATQLLNEMKENGMQPTTKIYTM--LITLFFKLDDVHGALSL 287
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EEMR + P F Y +I G G+ G +++ +M+ +G R DTV N +++ G
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINFLGK 347
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + Q+M SV TYN+++ +
Sbjct: 348 AGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + + A L E GS + Y +I KH
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV---YAVMI----KH 485
Query: 163 DSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
K G DD +++ + + VY A +++SGL G EA + + M+ G
Sbjct: 486 LGKAGRLDDAINMFDEMNKLGCAPDVY----AYNALMSGLARTGMLDEALSTMRRMQEHG 541
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y I+ G + G +++ M+ R D V N VL +
Sbjct: 542 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAA 601
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++M G + + TY+S+L + +
Sbjct: 602 KLMEEMNTLGFEYDLITYSSILEAIGKV 629
>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like, partial [Brachypodium distachyon]
Length = 907
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 61/114 (53%), Gaps = 1/114 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +++ G C +GQ A L+ ++VKGL P+ Y ++ GY + G +E+ E++V ++
Sbjct: 201 AYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEI 260
Query: 251 -ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ +D V +++ Y + +M D+G+ ++ YN+++N
Sbjct: 261 KENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMING 314
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 8/182 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ E A L L +L G V+ Y L+ +CK G + ++ + + +
Sbjct: 213 GQTEVARKL-LHSLQVKGLSPN--VVTYTLLVKGYCK----EGRMEEAEKVVKEIKENEK 265
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + A ++I+G C+ G+ +A + +EM G++ + F Y +I GY +LG + ++E
Sbjct: 266 IVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVE 325
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS- 303
+++ E G +D N ++ Y +++ M +G + TYN++LN
Sbjct: 326 KLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGF 385
Query: 304 CS 305
CS
Sbjct: 386 CS 387
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC++G+ +A NL E+++VKG P F Y +I+G G ++ + ++M S
Sbjct: 652 VILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSAR 711
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ +SR V K++ GI + TYN++++
Sbjct: 712 LTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDG 760
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 7/104 (6%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID CK ++ F + + + + Y +I GLC G EA
Sbjct: 754 YNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYT------ILIHGLCTQGYMEEAIK 807
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
L+++M ++P+ Y +I GY R G ++ + ++ N+M G
Sbjct: 808 LLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLYNEMHICG 851
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 35/197 (17%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD------------------- 163
K G+ E+A L ETL++ +R V+ +I+ CK+
Sbjct: 422 KAGKTEQALNLWKETLARGLARN---VVTINTVINGLCKNRRMTEAEELFHRMKEWSCPC 478
Query: 164 ---SKRGFDDTYARLNQLVNSSSSVYVKRQAL---------KSMISGLCEMGQPHEAENL 211
+ R D Y +L L ++ + ++ + L S I+GL Q + ++
Sbjct: 479 DSLTYRTLIDGYCKLGDL-GRATQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDI 537
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM KGL P+ Y +I G+ + G L D + +M G + + ++++S +
Sbjct: 538 RVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYR 597
Query: 272 HNELSRMVLWLQKMKDS 288
++ L LQK+ D+
Sbjct: 598 EGKVDEANLVLQKLADT 614
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 19/151 (12%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSVYVKR 189
L+L + G + L +F D K S+R LNQLV + ++V V +
Sbjct: 99 LLLRAHADAGQLKDALYVF-----DEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQ 153
Query: 190 Q-----------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
Q + M C G+ A + ++EM GL+ + Y ++ GY R+G
Sbjct: 154 QMRCAGTLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIG 213
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
E ++++ ++ G + V +++ Y
Sbjct: 214 QTEVARKLLHSLQVKGLSPNVVTYTLLVKGY 244
>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y NL+++ CK D+ LN ++ S V I C+ H A
Sbjct: 248 LLAYNNLLEALCKGGH---VDEAMDFLNDML--SKKVEPDAFTYSIFIRSYCDANNVHSA 302
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++MR L P+ F Y CII ++ +E+ +++++M S G + DT N + +
Sbjct: 303 FGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMISSGLKPDTWSYNAIQAY 362
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVL 301
+ DH E++R + + +M KD P TYN VL
Sbjct: 363 HCDHCEVNRALKLISRMEKDVCFP-DRHTYNMVL 395
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LID FCK + + + S ++ +I+ C +G EA
Sbjct: 398 IVAYNTLIDGFCKVGEMEKASELWDGM-----ISRKIFPNHITYGILINAYCSVGHVSEA 452
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M KG++P+ +I GY R G + + +M + G D + N +++
Sbjct: 453 FRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLING 512
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + + LW+ KM+ G+ + TYN V+N
Sbjct: 513 FVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNG 547
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G +A+ + M KG+ P Y +I G+ R ++ +N+ME +
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G D + N+V++ + + L L+KM + GI TY +++N T
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVT 585
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 1/123 (0%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S + + L M++ LC+ G+ + ++ + EM G+ Y +I Y R GLLE+
Sbjct: 112 SGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEE 171
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL- 301
I+N M G + N +++ +R L +M + G+ TYN++L
Sbjct: 172 AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLV 231
Query: 302 NSC 304
SC
Sbjct: 232 ESC 234
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG--FD---DTYARLNQLVNSSS 183
+A+ LIL + + G E+V L+ S C + FD TY + +L +
Sbjct: 13 DAQALILRMIRRSGVSRVEVVE---ALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTE 69
Query: 184 SVYVKR--------QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ + R A S++ GL ++ A + E+ G+E + + ++
Sbjct: 70 AFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALC 129
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G +D++ +++ME +G D V N ++ +Y L + M D G+ S+
Sbjct: 130 KDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLF 189
Query: 296 TYNSVLNS 303
TYN+++N
Sbjct: 190 TYNAIING 197
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 58/322 (18%), Positives = 134/322 (41%), Gaps = 33/322 (10%)
Query: 20 LRQQRLTLVQCLTARLTKQG--------QRFLSSLALAVTRDSKAASRLISKFVAS---- 67
+R +RL+ Q L R+ ++ + +SS+ ++ LI +V +
Sbjct: 6 VRSRRLSDAQALILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLR 65
Query: 68 --SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE-------SWFQWNPKLVAEII 118
+ F L + +L+S + + L L ++ + E S + N + ++
Sbjct: 66 EGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMV 125
Query: 119 AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178
L K G+ ++ ++ + E G+ ++ Y LI ++C+ ++ + +N +
Sbjct: 126 NALCKDGKFDDVKSFLSEME---GNGIYADMVTYNTLIGAYCREGL---LEEAFEIMNSM 179
Query: 179 VNSS--SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S++ ++I+GLC+ G+ A+ ++ EM GL P Y ++ R
Sbjct: 180 ADKGLKPSLF----TYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCR 235
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ + I +M G D V + +++ + + L + +++ + MK G+
Sbjct: 236 RDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVI 295
Query: 297 YNSVLNSCSTIMSMLQDLNSND 318
Y +++ +ML+ L D
Sbjct: 296 YTVLMHGYCRNGNMLEALKIRD 317
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y L+D FCK +G+ A+ +L + S Y+K + +I +C+ EA
Sbjct: 475 YSILLDGFCK----QGY---LAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEAR 527
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L E+ V+GL+P+ Y II G + GLL++ ME DG + N+++ +
Sbjct: 528 KLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNVIIRGF 587
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRT 296
H + SR V + +M++ G V T
Sbjct: 588 LQHKDESRAVQLIGEMREKGFVADVAT 614
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I+GLC++G+ +A L ++M +G +P Y II G ++G + +M
Sbjct: 195 FNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMG 254
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + D V + ++ S ++ + MK GI ++ TYNS++
Sbjct: 255 EAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLI 304
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C+ + EA+ L EM +GL P Y +I G +LG L + + M ++G
Sbjct: 408 LINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNG 467
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D +++L + L++ + M+ + + ++ YN ++++
Sbjct: 468 NLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDA 516
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y +LI C R + A LN+++ S ++ +I+ C+ G EA
Sbjct: 297 IFTYNSLIQGLCNFSRWR---EASAMLNEMM--SLNIMPNIVTFSLLINIFCKEGNVFEA 351
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++ M G+EP+ Y ++ GY + + ++ + M + G + D N++++
Sbjct: 352 RGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILING 411
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + +M G+ + +YN++++
Sbjct: 412 YCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDG 446
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ + +EA ++ M+ KG+ P+ F Y +I G + ++N+M S
Sbjct: 267 TIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSL 326
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ V +++++ + + L+ M + G+ +V TY+S++N S
Sbjct: 327 NIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYS 378
>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
Length = 595
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI G C+ G + LI++M +GL P Y +I Y +LG LE+ ER++ QM
Sbjct: 476 AYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQM 535
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ G D + ++ Y + +++ + +M+ + F + ++++
Sbjct: 536 TASGFVPDVAVFDSLIKGYSAEGQTDKVLKLIHEMRAKNVAFDPKIISTII 586
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 83/189 (43%), Gaps = 7/189 (3%)
Query: 117 IIAFLDKQG--QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
++A L ++G +A +L+++ + R + Y ++ C + R + A
Sbjct: 89 VLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLC---ASRRTGEAVAL 145
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L + +S V ++I GLC+ + A L++EM G++P+ Y C++ GY
Sbjct: 146 LRSM--QASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGY 203
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G +D+ ++ M G + D + ++ + + M G+ +V
Sbjct: 204 CRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNV 263
Query: 295 RTYNSVLNS 303
TYN ++NS
Sbjct: 264 VTYNVLINS 272
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 16/185 (8%)
Query: 135 LETLSKL-GSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKR 189
LE L ++ GS + V+ Y L+ +C+ D + F+D S +
Sbjct: 178 LELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFEDM---------SRRGIKPDV 228
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+I LC+ G+ +A + + M +GLEP+ Y +I + G + + + +
Sbjct: 229 IMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKE 288
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM--KDSGIPFSVRTYNSVLNSCSTI 307
M+ G D V N +++ E+ + +L++M D+ + V T+NSV++ I
Sbjct: 289 MDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKI 348
Query: 308 MSMLQ 312
M Q
Sbjct: 349 GRMTQ 353
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 21/187 (11%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + + A NL++E+ + GLEP F Y +I G+ ++ ++ E+ + M G
Sbjct: 376 LIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRG 435
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STIM 308
+ + +L++ + R + +M D Y+++++ T+
Sbjct: 436 IKAELFHYIPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVK 494
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELE------DSSVLDEAMKWD 354
++QD+ + + ++N EE V+K++ D +V D +K
Sbjct: 495 QLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGY 554
Query: 355 SGETKLD 361
S E + D
Sbjct: 555 SAEGQTD 561
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 86/207 (41%), Gaps = 36/207 (17%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNS 181
+ E +S+ G + V+ + LID CK +RG + N L+NS
Sbjct: 215 VFEDMSRRGIKPD--VIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINS 272
Query: 182 SSSVYVKRQAL------------------KSMISGLCEMGQPHEAENLIEEMRVKG---L 220
R+AL ++I+GL + + EA + +EEM ++G +
Sbjct: 273 LCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEM-IQGDTVV 331
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
EP + +I+G ++G + ++ M G + V N ++ + +++ +
Sbjct: 332 EPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMN 391
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ ++ SG+ TY+ ++N S +
Sbjct: 392 LMDELAISGLEPDSFTYSILINGFSKM 418
>gi|255685744|gb|ACU28361.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ + V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKTGS---VEDAIRLLHRMIDEGFNPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTY 297
G D+ C N ++ ++ H ++ + ++M ++ G +V TY
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTY 165
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++++M +G D V ++V
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 62
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + + + Q + +G+ + Y+S+++
Sbjct: 63 VNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDG 100
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 82/169 (48%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVN----SSSSVYVKRQALKSMISGL--------- 199
C L+DSF K+ GFD + L+N S ++ Y+ LK ++S +
Sbjct: 383 CELLDSFIKNGGNPGFDVYIMVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDC 442
Query: 200 -CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G +AE +++EM+ KG P+ + +I GY +LG + + + ++ + G D
Sbjct: 443 FVKAGAVDKAEEIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPD 502
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++ + ++L + ++M + G+ + +TYN ++++ CS
Sbjct: 503 IITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSA 551
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
C L++S+ + R + + ++ +L + S++VY ++I+ G A
Sbjct: 157 CALVESWGRLGLARYAHEVFVQMPRLGLRPSTAVY------NALIAASVRAGAVDTAYLR 210
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME +G R + M++ + +
Sbjct: 211 FQQMPADGCRPDRFTYNSLVHGVCRRGIVDEAVRLVRQMEGEGIRPNVFTYTMLVDGFCN 270
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L KMK+ G+ S TY ++++
Sbjct: 271 AGRVEEAFRMLDKMKEKGVAPSEATYRTLVHG 302
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S+I GLC Q +A EEM G+ P+ Y +++ G + ++N+M+
Sbjct: 506 FTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMK 565
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DG D N ++ S+ ++ + M G+ TYNS++ +
Sbjct: 566 IDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKA 617
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ AE +L++L G ++ Y LI+ +C+ G T+ ++
Sbjct: 350 LCKDGKVSIAEE-VLQSLVNAGLVPTRVI--YNTLINGYCQTGELEGAFSTFGQM----- 401
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + ++I+GLC+ + A++L+ EM+ G+ P+ + +I YGR G L
Sbjct: 402 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 461
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E ++++M+ +G + + V +++++ + ++ V L M + + + YN++
Sbjct: 462 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 521
Query: 301 LNSC------STIMSMLQDLNSNDFPLSI----LELTEVLNEEEVS----VVKELEDSSV 346
+++ +++ + SN SI L + + N+ ++S ++ L + +
Sbjct: 522 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 581
Query: 347 LDEAMKWDS 355
+ +A+ +++
Sbjct: 582 IPDAVSYNT 590
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +++++FCK+ + A L+ + + V Q ++I E G +A
Sbjct: 480 VVSYGSIVNAFCKNGK---IPEAVAILDDMFHKD--VLPNAQVYNAIIDAYVEHGPNDQA 534
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E+M+ G+ PS Y +I G + + E I+N + + D V N ++S+
Sbjct: 535 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 594
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + Q+M GI +VRTY+ +++
Sbjct: 595 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 629
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L++ CK D K + L LVN+ + R ++I+G C+ G+ A + +
Sbjct: 346 LLNGLCK-DGKVSIAEEV--LQSLVNAG--LVPTRVIYNTLINGYCQTGELEGAFSTFGQ 400
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ + ++P Y +I G + + + + ++ +M+ +G N ++ +YG +
Sbjct: 401 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 460
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + + L +M+++G+ +V +Y S++N+
Sbjct: 461 LEKCFIVLSEMQENGLKPNVVSYGSIVNA 489
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + + P GF Y + G R G + M + + +G
Sbjct: 276 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 335
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ +++L+ ++S LQ + ++G+ + YN+++N C T
Sbjct: 336 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 388
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G+ G+ +A + +EM + + P+ Y +I G+ + G LE R+ +QM G
Sbjct: 206 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 265
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
+ + + N++LS G E S ++ + QKM G +S+ N S M
Sbjct: 266 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 325
Query: 310 ML------QDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
L + D+ SIL L + + +VS+ +E+ S V
Sbjct: 326 SLFGKYLKNGVTIGDYTCSIL-LNGLCKDGKVSIAEEVLQSLV 367
>gi|297610666|ref|NP_001064867.2| Os10g0479200 [Oryza sativa Japonica Group]
gi|255679497|dbj|BAF26781.2| Os10g0479200 [Oryza sativa Japonica Group]
Length = 818
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++I GLC++G EA +L E + +G+E Y +I GY LGL +++ +I+
Sbjct: 289 RYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ 348
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G D V ++++ + + ++ + + + D G+ ++ TY+ +LN+
Sbjct: 349 MMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNA 403
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S LC G A++ + M GL P + + +I+G ++G +E+ + ++ +G
Sbjct: 260 LMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEG 319
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCST---- 306
++ V N +++ Y G E+ +++ Q M+ G+ + TY ++ C +
Sbjct: 320 MELEIVTYNSLINGYRLLGLTKEIPKII---QMMRGQGVEPDLVTYTILIAGHCESGDVE 376
Query: 307 -IMSMLQDLNSNDFPLSILELTEVLN 331
M + +D+ L+I+ + +LN
Sbjct: 377 EGMKVRKDVLDQGLQLNIVTYSVLLN 402
>gi|255582955|ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528066|gb|EEF30142.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 521
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 63/295 (21%), Positives = 125/295 (42%), Gaps = 29/295 (9%)
Query: 21 RQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAAS---RLISKFVASSP---QFIAL 74
+ ++ V L ++T + +F ++ L + + +S R++ F A P + +L
Sbjct: 104 QTKKFHAVDALLHQMTYETCKFHENIFLNLMKHFYKSSLHERVLEMFYAIQPIVREKPSL 163
Query: 75 NALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
A+S L+ ++ LA + + E + N + ++ K G E A
Sbjct: 164 KAISTCLNILVESKQID-LAQKCLLYVNEHLKVRPNTCIFNILVKHHCKSGDLESA---- 218
Query: 135 LETLSKLGSREREL--VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192
LE + ++ R V+ Y LID C + RL + + + K Q L
Sbjct: 219 LEVMHEMKKSRRSYPNVITYSTLIDGLCGN----------GRLKEAIELFEEMVSKDQIL 268
Query: 193 KS------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+I G C G+ A ++E MR G +P+ F Y ++ G+ + G LE+ + +
Sbjct: 269 PDALTYSVLIKGFCHGGKADRARKIMEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEV 328
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++M+S G + DTV +++ + + + L++M + T+N +L
Sbjct: 329 FDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLL 383
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++G C+ G+ EA+ + +EM+ GL+P Y +I + +G +++ ++ +M
Sbjct: 312 LMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMK 371
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ D V N++L + L+ + G+ + +Y VLN
Sbjct: 372 CKADAVTFNVLLKGLCREGRFDEALRMLENLAYEGVYLNKGSYRIVLN 419
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ AE +L++L G ++ Y LI+ +C+ G T+ ++
Sbjct: 346 LCKDGKVSIAEE-VLQSLVNAGLVPTRVI--YNTLINGYCQTGELEGAFSTFGQM----- 397
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + ++I+GLC+ + A++L+ EM+ G+ P+ + +I YGR G L
Sbjct: 398 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 457
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E ++++M+ +G + + V +++++ + ++ V L M + + + YN++
Sbjct: 458 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 517
Query: 301 LNSC------STIMSMLQDLNSNDFPLSI----LELTEVLNEEEVS----VVKELEDSSV 346
+++ +++ + SN SI L + + N+ ++S ++ L + +
Sbjct: 518 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 577
Query: 347 LDEAMKWDS 355
+ +A+ +++
Sbjct: 578 IPDAVSYNT 586
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +++++FCK+ + A L+ + + V Q ++I E G +A
Sbjct: 476 VVSYGSIVNAFCKNGK---IPEAVAILDDMFHKD--VLPNAQVYNAIIDAYVEHGPNDQA 530
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E+M+ G+ PS Y +I G + + E I+N + + D V N ++S+
Sbjct: 531 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 590
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + Q+M GI +VRTY+ +++
Sbjct: 591 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 625
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L++ CK D K + L LVN+ + R ++I+G C+ G+ A + +
Sbjct: 342 LLNGLCK-DGKVSIAEEV--LQSLVNAG--LVPTRVIYNTLINGYCQTGELEGAFSTFGQ 396
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ + ++P Y +I G + + + + ++ +M+ +G N ++ +YG +
Sbjct: 397 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 456
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + + L +M+++G+ +V +Y S++N+
Sbjct: 457 LEKCFIVLSEMQENGLKPNVVSYGSIVNA 485
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + + P GF Y + G R G + M + + +G
Sbjct: 272 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNG 331
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ +++L+ ++S LQ + ++G+ + YN+++N C T
Sbjct: 332 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 384
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G+ G+ +A + +EM + + P+ Y +I G+ + G LE + +QM G
Sbjct: 202 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHG 261
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNSCSTIM- 308
+ + + N++LS G E S ++ + QKM G +S+ N S M
Sbjct: 262 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 321
Query: 309 -----SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
S+ + D+ SIL L + + +VS+ +E+ S V
Sbjct: 322 SLFGKSLKNGVTIGDYTCSIL-LNGLCKDGKVSIAEEVLQSLV 363
>gi|10140738|gb|AAG13570.1|AC037425_1 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 811
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 61/115 (53%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++I GLC++G EA +L E + +G+E Y +I GY LGL +++ +I+
Sbjct: 289 RYTFSTLIHGLCKVGSMEEALDLFERVTKEGMELEIVTYNSLINGYRLLGLTKEIPKIIQ 348
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M G D V ++++ + + ++ + + + D G+ ++ TY+ +LN+
Sbjct: 349 MMRGQGVEPDLVTYTILIAGHCESGDVEEGMKVRKDVLDQGLQLNIVTYSVLLNA 403
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/146 (21%), Positives = 70/146 (47%), Gaps = 12/146 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S LC G A++ + M GL P + + +I+G ++G +E+ + ++ +G
Sbjct: 260 LMSALCNWGFVQSAKSFLCLMLKYGLVPDRYTFSTLIHGLCKVGSMEEALDLFERVTKEG 319
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCST---- 306
++ V N +++ Y G E+ +++ Q M+ G+ + TY ++ C +
Sbjct: 320 MELEIVTYNSLINGYRLLGLTKEIPKII---QMMRGQGVEPDLVTYTILIAGHCESGDVE 376
Query: 307 -IMSMLQDLNSNDFPLSILELTEVLN 331
M + +D+ L+I+ + +LN
Sbjct: 377 EGMKVRKDVLDQGLQLNIVTYSVLLN 402
>gi|260780548|gb|ACX50820.1| AT1G03560-like protein [Capsella bursa-pastoris]
Length = 183
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 84/179 (46%), Gaps = 8/179 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q P + +I L K+G+ E + E + + GS+ V Y LID + K +
Sbjct: 4 QVPPHAFSLVIGGLCKEGKLNEGYA-VFENMIRKGSKPN--VAIYTVLIDGYAKSGN--- 57
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+D L+++++ V +++GLC+ G+ EA + + + GL + Y
Sbjct: 58 VEDAIRLLHRMIDEGFKPDV--VTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFY 115
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ + ++M+
Sbjct: 116 SSLIDGLGKAGRIDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHGKVDEAMTLFKRME 174
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 63/120 (52%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +ED
Sbjct: 2 GIQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGNVEDA 61
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++++M +G + D V ++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 62 IRLLHRMIDEGFKPDVVTFSVVVNGLCKNGRVEEALDYFQTCQFNGLAINSMFYSSLIDG 121
>gi|414887035|tpg|DAA63049.1| TPA: crs2 associated factor1 [Zea mays]
Length = 668
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + + S + +
Sbjct: 266 VTALISALGTAGRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVRIASLKNAEQV 321
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 322 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M++ G R D N+++ ++G +N L + KM++ GI
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFNKMREEGIE 436
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 437 PDVVTWNTLIDA 448
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M++DG V +
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ M+++G+ V TY +++ +
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMRENGLRPDVITYTTLMKA 623
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM+ G+ P Y +I +G+
Sbjct: 365 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L N+M +G D V N ++ ++ R ++M++S P TYN
Sbjct: 419 CLGHAMDAFNKMREEGIEPDVVTWNTLIDAHCKGGRHDRAAELFEEMRESNCPPGTTTYN 478
Query: 299 SVLN 302
++N
Sbjct: 479 IMIN 482
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LID+ CK G D A L + + S+ MI+ L E
Sbjct: 439 VVTWNTLIDAHCKG----GRHDRAAELFEEMRESNCP-PGTTTYNIMINLLGEQEHWEGV 493
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG + + ++++
Sbjct: 494 EAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPTMYHALVNA 553
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + ++ MK G+ S+ NS++N+
Sbjct: 554 YAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588
>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 675
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 74/188 (39%), Gaps = 30/188 (15%)
Query: 146 RELVLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSS---------- 183
R V+ Y ++DSFCK K G N LVN S
Sbjct: 187 RPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKE 246
Query: 184 --------SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ V +I G CE GQ EA L EEM +G P+ Y I+YG
Sbjct: 247 LIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLC 306
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G + D ++++ M + D V N ++ Y + L +++ G+ SV
Sbjct: 307 KWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVV 366
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 367 TYNTLIDG 374
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
I GL ++G EA L+++M GL P Y II+ + G L + +M S G
Sbjct: 476 FIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKG 535
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
V +++ SY L +L +M + G+ +V TYN+++N + M Q
Sbjct: 536 IFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQ 593
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V + L+ FCK +K FD+ LN+ + Y+ R I G ++G
Sbjct: 400 VFTFTILVRGFCKLGNLPMAKELFDEM---LNRGLQPDRFAYITR------IVGELKLGD 450
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
P +A + EEM +G P Y I G +LG L++ +V +M +G D V
Sbjct: 451 PSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTS 510
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ ++ L + +M GI SV TY +++S
Sbjct: 511 IIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTYTVLIHS 549
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC MG A L +EM G +P F + ++ G+ +LG L + + ++M +
Sbjct: 370 TLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNR 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D + + S+ ++M G P + TYN ++
Sbjct: 430 GLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 479
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E S + ++P +I ++GQ +EA L E LS+ ++ Y ++ CK
Sbjct: 257 EVSAYTYDP-----LIRGYCEKGQLDEASRLGEEMLSRGAV---PTLVTYNTIMYGLCKW 308
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D L+ +VN + + + ++I G +G EA L E+R +GL P
Sbjct: 309 GR---VSDARKLLDVMVNKN--LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVP 363
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
S Y +I G R+G L+ R+ ++M G D +++ +
Sbjct: 364 SVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGF 410
>gi|326487712|dbj|BAK05528.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 455
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 26/227 (11%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
S AF + + E + P LV + ++ L + G+ +EA L + K +L
Sbjct: 216 SETAFRVLDEMREYTCGDVRPNLVTYSTLLGGLCRAGKMKEAFELFEGMIEKDHIVPDQL 275
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--------LKSMISGLC 200
Y +ID FC RL Q+ + + R+ ++I+G C
Sbjct: 276 T--YNVIIDGFC-------------RLGQVEKARTIFGFMRKNECEPNAFNYATLINGHC 320
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G A+ + EEMR G+EP Y +I R G +++ +V +M G + D V
Sbjct: 321 KKGDVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLVMEMREKGCKADVV 380
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
N++L ++ ++ L ++ + G+ +V +Y V+N+ CS+
Sbjct: 381 TYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 427
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 79/187 (42%), Gaps = 10/187 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-Y 152
AF L+ + E+ + II + GQ E+A T+ + E E F Y
Sbjct: 257 AFELFEGMIEKDHIVPDQLTYNVIIDGFCRLGQVEKARTI----FGFMRKNECEPNAFNY 312
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI+ CK D A+L S+ V + ++I LC G E +L+
Sbjct: 313 ATLINGHCKKG-----DVENAKLVFEEMRSAGVEPDAVSYTALIGCLCRHGSVDEGIDLV 367
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EMR KG + Y ++ G + G + ++ ++ ++ +G +++ +V+++
Sbjct: 368 MEMREKGCKADVVTYNLLLEGLCKDGRMAEVMDLLGRLPEEGVQLNVASYRIVMNTLCSS 427
Query: 273 NELSRMV 279
++ + V
Sbjct: 428 GDMEKAV 434
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 14/168 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+DS CK+ R ++ A L + +S++ Q +I G+C G+ A +L
Sbjct: 418 YSILLDSLCKN---RHLEEAMALLKAI--EASNLNPDIQVYNIIIDGMCRAGELEAARDL 472
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ KGL PS + Y +I+G + GLL + ++ +M+ + D N + +
Sbjct: 473 FSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQ 532
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDF 319
+NE R + L++M G FS +SC ++S+L + + F
Sbjct: 533 NNETLRAIQLLEEMLARG--FSA-------DSCFLMLSVLSEDDRRYF 571
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/281 (22%), Positives = 119/281 (42%), Gaps = 29/281 (10%)
Query: 47 ALAVTRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
+L R A L S+ V SP +L H L +++L +
Sbjct: 214 SLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMV------ 267
Query: 105 SWFQWNPKLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
N K++ +++ F L K+G+ EA I++ + + G V+ Y L+D
Sbjct: 268 -----NSKILPDVVIFSTVVDALCKEGKVTEAHE-IVDMMIQRGVEPD--VVTYTTLMDG 319
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
C D+ + +V + V + ++I+G C++ + +A L EEM K
Sbjct: 320 HCLQSE---MDEAVKVFDMMVRKGFAPDV--ISYTTLINGYCKIHKIDKAMYLFEEMCRK 374
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
P Y ++YG +G L+D + ++M + G D V +++L S + L
Sbjct: 375 EWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEA 434
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS-C-STIMSMLQDLNSN 317
+ L+ ++ S + ++ YN +++ C + + +DL SN
Sbjct: 435 MALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSN 475
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 82/198 (41%), Gaps = 37/198 (18%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFD------------DTYAR-------------------LN 176
V+ Y ++IDS CK F+ D + LN
Sbjct: 205 VVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLN 264
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+VN S + +++ LC+ G+ EA +++ M +G+EP Y ++ G+
Sbjct: 265 QMVN--SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVR 295
+++ ++ + M G D + +++ Y +++ + + ++M + IP +
Sbjct: 323 QSEMDEAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIP-DTK 381
Query: 296 TYNSVLNSCSTIMSMLQD 313
TYN+++ + LQD
Sbjct: 382 TYNTLMYGLCHV-GRLQD 398
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK + + Q N V + S+I LC+ Q EA
Sbjct: 170 VVTYGTLINGLCKVGNTSAAIRLLRSMEQ-GNCQPDVVI----YTSIIDSLCKDRQVTEA 224
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL +M +G+ P F Y +++ L + + ++NQM + D V + V+ +
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ + M G+ V TY ++++
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 319
>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 577
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 325 KINPNVVTFNALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 380
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I+G C+ + E L EM +GL +
Sbjct: 381 ---LDEAKHMFELMI--SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT 435
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I+G+ + ++ + + QM SDG + + N +L + +L + ++ +
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495
Query: 285 MKDSGIPFSVRTYN 298
++ S + ++ TYN
Sbjct: 496 LQRSKMEPTIYTYN 509
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P Y +I G+ R GL E+ + + +M DG
Sbjct: 511 MIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Query: 255 TRVDT 259
D+
Sbjct: 571 PLPDS 575
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 17/215 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LAF L ++ E + + N + + +I L K ++A L E +K G R V+ Y
Sbjct: 243 LAFNLLNKM-EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRPN--VITY 298
Query: 153 CNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+LI C + D+ R D R +N + + ++I + G+ EA
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERK---INPNVVTF------NALIDAFVKEGKLVEA 349
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E L +EM + ++P F Y +I G+ L++ + + M S + V N +++
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V ++M G+ + TY ++++
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 11/168 (6%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R DT+ ++ HN+ S V + +M G ++ TY V+N L
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-------LCKR 238
Query: 315 NSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDL 362
D ++L E E V+ S+V+D K+ + L+L
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIY----STVIDSLCKYRHEDDALNL 282
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI F + R D+ Q+V S V+ +++ GLC+ G+ +A +
Sbjct: 438 YTTLIHGFFQ---ARDCDNAQMVFKQMV--SDGVHPNIMTYNTLLDGLCKNGKLEKAMVV 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E ++ +EP+ + Y +I G + G +ED + + G + D + N ++S +
Sbjct: 493 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCR 552
Query: 272 HNELSRMVLWLQKMKDSG 289
+KM++ G
Sbjct: 553 KGLKEEADALFRKMREDG 570
>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12775, mitochondrial-like [Glycine max]
Length = 750
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/255 (22%), Positives = 110/255 (43%), Gaps = 24/255 (9%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL-GSRERELVLFYCNLIDSFCKHDSK 165
FQ N +I L K G+ + L L KL G + V+ Y +I S CK+
Sbjct: 164 FQLNQVSYRTLINGLCKTGETKAVARL----LRKLEGHSVKPDVVMYNTIIHSLCKNKLL 219
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D Y+ + +V S V AL + G C MG EA +L+ EM++K + P
Sbjct: 220 GDACDLYSEM--IVKGISPNVVTYNAL---VYGFCIMGHLKEAFSLLNEMKLKNINPDVC 274
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +I G+ G ++ + ++ M + D V N ++ Y N++ M
Sbjct: 275 TFNTLIDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSM 334
Query: 286 KDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLSILELTEVLN-------- 331
SG+ +VRTY ++++ MS+ +++ + I+ T +++
Sbjct: 335 AQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHL 394
Query: 332 EEEVSVVKELEDSSV 346
E +++ K++++ +
Sbjct: 395 ERAIALCKKMKEQGI 409
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 170 DTYARLNQLVNSSSSVYVKRQA--------LKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y LN++ N+ Y Q+ +MI GLC+ EA +L EEM+ K +
Sbjct: 316 DGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMI 375
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P Y +I G + LE + +M+ G + D ++L + L +
Sbjct: 376 PDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEF 435
Query: 282 LQKMKDSGIPFSVRTYNSVLNS 303
Q++ G +V+TYN ++N
Sbjct: 436 FQRLLVKGYHLNVQTYNVMING 457
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 8/141 (5%)
Query: 170 DTYARLNQLVNSSSSVYV--------KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y +N+L ++ Y Q MI GLC+ EA +L EEM+ K +
Sbjct: 549 DGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMF 608
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P+ Y +I + LE ++ +M+ G + D ++L L
Sbjct: 609 PNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEI 668
Query: 282 LQKMKDSGIPFSVRTYNSVLN 302
Q++ G +V+ Y +++N
Sbjct: 669 FQRLLVKGYHLNVQVYTAMIN 689
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 93/233 (39%), Gaps = 44/233 (18%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D+ CK + + RL LV ++ Q MI+GLC+ EA +L
Sbjct: 416 YTILLDALCKGGRLENAKEFFQRL--LV---KGYHLNVQTYNVMINGLCKADLFGEAMDL 470
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG----------------- 254
+M KG P +K II + E+I+ +M + G
Sbjct: 471 KSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLA 530
Query: 255 ------TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN------ 302
+ D V ++ Y NEL M G+ +V+ Y +++
Sbjct: 531 VMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKK 590
Query: 303 SCSTIMSMLQDL-NSNDFPLSILELTEVLN--------EEEVSVVKELEDSSV 346
+ MS+ +++ + N FP +I+ T +++ E ++++KE+++ +
Sbjct: 591 TVDEAMSLFEEMKHKNMFP-NIVTYTSLIDALCKNHHLERAIALLKEMKEHGI 642
>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
lyrata]
Length = 988
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 87/206 (42%), Gaps = 37/206 (17%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HDSKRGFDDTYARL 175
EEA L L+ +S G ++V Y LID CK S+ GF T
Sbjct: 657 EEARKL-LDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTY 713
Query: 176 NQLVNSSSSVYVKRQALKS--------------------MISGLCEMGQPHEAENLIEEM 215
+ L++ V KRQ L S MI GLC++G+ EA L++ M
Sbjct: 714 SSLIDRYFKV--KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMM 771
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
KG +P+ Y +I G+GR+G +E ++ +M S G + V +++ + L
Sbjct: 772 EEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 831
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVL 301
L++MK + P Y V+
Sbjct: 832 DVAHNLLEEMKQTHWPTHAAGYRKVI 857
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 35/61 (57%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G C++ + EA L++ M ++G EP+ Y +I G ++G L++ + + +M
Sbjct: 645 ALLDGFCKLHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEH 704
Query: 254 G 254
G
Sbjct: 705 G 705
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 11/213 (5%)
Query: 94 AFPLYMRITEE---SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
F Y +I EE S Q P + +IA K G E+A +E+ K+ + +
Sbjct: 111 GFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKA----VESFGKMKDFGCKPDV 166
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
F N I K F A NQ++ + + R +++GLC+ G+ +A
Sbjct: 167 FTYNSILHVMVQ--KEVFLLALAVYNQMLKLNYNP--NRATFVILLNGLCKNGKTDDALK 222
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ +EM KG+ P+ Y I+ G + +D+ R++N M+ G D++ N +L +
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ LQ + G ++ Y+S+++
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN L+D FCK D+ +A L QL V + + S+I GL + E +
Sbjct: 274 CNALLDGFCKLGQ---IDEAFALL-QLFEKEGYV-LGIKGYSSLIDGLFRAKRYDEVQEW 328
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M G+EP Y +I G+ +G+++ ++N M G DT C N ++ + D
Sbjct: 329 CRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCD 388
Query: 272 HNELSRM-VLWLQKMKDSGIPFSVRTY---------NSVLNSCSTIMSMLQDL 314
L + L L+ K+ P S TY N +L+ I + +++L
Sbjct: 389 VGLLDKARSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQMENL 440
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 70/174 (40%), Gaps = 37/174 (21%)
Query: 157 DSFCKHDSKRGFDDT----YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
D++C + +GF D AR QL S + + +I G+C G EA +
Sbjct: 375 DTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIF 434
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-----------SDG------- 254
+M G PS + +I G + G LE+ + +ME S G
Sbjct: 435 NQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDT 494
Query: 255 ----TRVDTVC-SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
T V+ +C S ++L +Y L ++ DSG+ + TYN ++N
Sbjct: 495 ASLQTMVERLCESGLILKAYK----------LLMQLADSGVVPDIMTYNVLING 538
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN-SSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y LI FC+ G D YA LN L + + + ++I G C++G +
Sbjct: 341 VVLYTILIRGFCE----VGMVD-YA-LNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDK 394
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +L E+ P+ Y +I G R GLL++ +I NQME+ G + N ++
Sbjct: 395 ARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALID 454
Query: 268 SYGDHNELSRMVLWLQKMKDSGIP 291
EL KM+ P
Sbjct: 455 GLCKAGELEEARHLFYKMEIGKNP 478
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
Y L QL +S V +I+G C+ + A L E+++KG P Y +
Sbjct: 513 AYKLLMQLADSG--VVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTL 570
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS-RMVLWLQKMK 286
I G+ R+ ED R+++QM +G + +++ +LS LWL+ ++
Sbjct: 571 IDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLR 627
>gi|356541064|ref|XP_003539003.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 703
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 67/128 (52%), Gaps = 7/128 (5%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V+S++ VY +++ C+ + EAE L EM+ KG++P+ + ++Y Y R
Sbjct: 362 VSSNTIVY------NTLMDAYCKSNRVEEAEGLFVEMKTKGIKPTEATFNILMYAYSRKM 415
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL-WLQKMKDSGIPFSVRTY 297
E +E+++ +M+ G + + ++S+YG +S M KMK GI + +Y
Sbjct: 416 QPEIVEKLMAEMQETGLKPNAKSYTCIISAYGKQKNMSDMAADAFLKMKKDGIKPTSHSY 475
Query: 298 NSVLNSCS 305
+++++ S
Sbjct: 476 TALIHAYS 483
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 72/159 (45%), Gaps = 8/159 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D+F + G T ++ +L+ V R +++ G + G EA ++
Sbjct: 510 YTALLDAF----RRAGDTQTLMKIWKLMRREK-VEGTRVTFNTLVDGFAKHGYYKEARDV 564
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I + GL P+ Y ++ Y R G + ++ +M + + D+V + ++ ++
Sbjct: 565 ISKFANVGLHPTVMTYNMLMNAYARGGRHSKLPELLEEMAAHNLKPDSVTYSTMIYAFLR 624
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYN---SVLNSCSTI 307
+ S+ + Q+M SG V +Y +VL++ + I
Sbjct: 625 VRDFSQAFFYHQEMVKSGQVMDVDSYQKLRAVLDAKAAI 663
>gi|413944087|gb|AFW76736.1| hypothetical protein ZEAMMB73_938811 [Zea mays]
Length = 496
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 129/314 (41%), Gaps = 36/314 (11%)
Query: 18 CRLRQ-QRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNA 76
CR ++ Q L LV+ L RFL +L KA + + + V+S LN
Sbjct: 105 CRFQEPQFLPLVRLLPPDHALVLLRFLPALLRTSRVSHKALAVCLDRLVSSRGCHGVLNE 164
Query: 77 L-SHLLSPDTTH-PRLSSL-----------------AFPLYMRITEESWFQWNPKLV--A 115
L + L P + PR ++ AF + + E + P LV +
Sbjct: 165 LLADLRDPRNKYLPRPNTCVYNILVKHYVKNGELETAFKVLDEMREYTCADVKPNLVTYS 224
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---DSKRGFDDTY 172
+I L + G+ +EA L E + K R L Y +ID FC+ D R +
Sbjct: 225 TLIGGLCRGGKMKEAFELFEEMIEK--DRIVPDQLLYNVIIDGFCRQGQVDKARAIFG-F 281
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R N+ ++ + ++I+G C+ A ++ EEMR G+EP Y +I
Sbjct: 282 MRKNECEPNTFNY-------ATLINGHCKKADIEAARSVFEEMRNSGVEPDAVSYTALIG 334
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
R G +++ +V +M+ G R D V N+V+ + L+ + G+
Sbjct: 335 CLCRHGSVDEGIGLVLEMKEKGCRADVVTYNLVIEGLCKDGRTVEAMGLLESVPLEGVKL 394
Query: 293 SVRTYNSVLNS-CS 305
+V +Y ++N CS
Sbjct: 395 NVASYRILMNCLCS 408
>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
Length = 572
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA+ ++E M KG EP Y ++ G +G LED ++ + G
Sbjct: 257 LIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRG 316
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N++++ Y ++ ++M+ G+ S TYN+++ +
Sbjct: 317 IKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGA 365
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+D CK+ D + + + + + + ++ G+C G+ EA
Sbjct: 394 YCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNI-----EVFSILLDGMCRAGKLEEAWKQ 448
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E+ GLEP Y +I G G+L + +++ QME G D++ N+++ +
Sbjct: 449 FDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNVIIQNLLK 508
Query: 272 HNELSRMVLWLQKMKD 287
NE+ + L++M++
Sbjct: 509 ENEIHEAIQLLEEMRN 524
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +IDS CK D ++ + + + S++ GLC G+ EA
Sbjct: 146 VFTYGMIIDSLCKDGMTTEALDMFSEM-----IGAGILPDVVVYSSLMDGLCRFGRLKEA 200
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM +G+ + Y +I+G R GL +++ +N M G D +++
Sbjct: 201 LEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDG 260
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ L+ M G + TYN+++N
Sbjct: 261 LCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNG 295
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
II L K G EA + E + G+ V+ Y +L+D C+ ++ F +
Sbjct: 152 IIDSLCKDGMTTEALDMFSEMI---GAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEME 208
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R S+ VY S+I GL G E + M +G P F + +I
Sbjct: 209 GR-----GISADVYT----YNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILID 259
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G + G + + ++I+ M G D + N +++ +L + + D GI
Sbjct: 260 GLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL 319
Query: 293 SVRTYNSVLNS 303
+V +YN ++N
Sbjct: 320 NVFSYNILING 330
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 82/175 (46%), Gaps = 13/175 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI + C+ R + + + ++K ++ GLC+ G EA +L
Sbjct: 359 YNTLIGALCQSGRVRTAQKLFVEMQ-----TCGQFLKLSTYCVLLDGLCKNGHLEEAIDL 413
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ ++ +P+ + ++ G R G LE+ + +++ +G DT+ N++++ +
Sbjct: 414 FQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCN 473
Query: 272 HNELSRMVLWLQKMKDSG-IPFSVRTYNSVL------NSCSTIMSMLQDLNSNDF 319
LS V L +M++ G +P S+ T+N ++ N + +L+++ + +F
Sbjct: 474 KGMLSEAVKLLWQMEEKGCLPDSI-TFNVIIQNLLKENEIHEAIQLLEEMRNRNF 527
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC +GQ +A L E + +G++ + F Y +I GY + +++ R+ +M
Sbjct: 291 TLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPK 350
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N ++ + + +M+ G + TY +L+
Sbjct: 351 GLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDG 400
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
+I L K+G+ EA+ ILE + G +L Y L++ C D+ + F+
Sbjct: 257 LIDGLCKEGKVGEAQQ-ILELMHHKGKEPD--ILTYNTLMNGLCLVGQLEDATKLFESLA 313
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R +L S ++ +I+G C+ + EA L EEMR KGL+PS Y +I
Sbjct: 314 DRGIKLNVFSYNI---------LINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIG 364
Query: 233 GYGRLGLLEDMERIVNQMESDGT--RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ G + +++ +M++ G ++ T C ++L + L + Q +K +
Sbjct: 365 ALCQSGRVRTAQKLFVEMQTCGQFLKLSTYC--VLLDGLCKNGHLEEAIDLFQSIKKTEH 422
Query: 291 PFSVRTYNSVLNS 303
++ ++ +L+
Sbjct: 423 KPNIEVFSILLDG 435
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A +LE + K G L Y L+ +FCK ++ D A L+
Sbjct: 178 LISFLCRKGLVEPALE-VLEQIPKYGCTPNSLS--YNPLLHAFCK---QKKMDKAMAFLD 231
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S Y + ++++ LC G+ A L+ +++ KG P Y +I G +
Sbjct: 232 LMV--SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ ++N+M S G + D + + + + + + + K++D GI +
Sbjct: 290 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 349
Query: 297 YNSVL 301
YN+++
Sbjct: 350 YNAII 354
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +M++G C GQ A L+ EM V EP + Y +I G G + ++++M
Sbjct: 2 AYNAMVAGYCGAGQLDAARRLVAEMPV---EPDAYTYNTLIRGLCGRGRTANALAVLDEM 58
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V ++L + + + + L +M+D G + TYN V+N
Sbjct: 59 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 111
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E ++ Q+ G
Sbjct: 143 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 202
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ + + +L M G + +YN++L +
Sbjct: 203 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 251
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A ++E++ G P+ Y +++ + + ++ ++ M S G
Sbjct: 178 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 237
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 238 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 286
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+++ CK + G+ L+++ + + + +++G+C+ G+ +A
Sbjct: 67 VVTYTILLEATCK---RSGYKQAMKLLDEMRDKGCTPDI--VTYNVVVNGICQEGRVDDA 121
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ + G EP+ Y ++ G ED E ++ +M G + V NM++S
Sbjct: 122 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF 181
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L+++ G + +YN +L++
Sbjct: 182 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 216
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 6/137 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C +G+ EA L++ M GL+P+ Y +++GY R G ++D + +M S+
Sbjct: 524 ALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSN 583
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
G V N +L S M SG +S+ TYN +LN S
Sbjct: 584 GITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEA 643
Query: 308 MSMLQDLNSNDFPLSIL 324
+ M Q L S D + I+
Sbjct: 644 LKMFQSLCSKDLQVDII 660
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID+ CK DD + NQ++N + + S++ GLC + + +A
Sbjct: 414 VVNYATLIDALCKLGR---VDDAELKFNQMINEGVAPNI--VVFTSLVYGLCTIDKWEKA 468
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EM +G+ P+ + I+ G + +R+++ ME GTR D + N ++
Sbjct: 469 GELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRG 528
Query: 269 Y---GDHNELSRMVLWL--------------------------------QKMKDSGIPFS 293
+ G +E S+++ + Q+M +GI
Sbjct: 529 HCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPV 588
Query: 294 VRTYNSVLNS 303
V TYN++L+
Sbjct: 589 VVTYNTILHG 598
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ EA L + M KG++P Y I++GY G L +M ++ M +G +
Sbjct: 319 LCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPN 378
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+V ++ + + KM+ G+ +V Y +++++
Sbjct: 379 HYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDA 423
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 52/112 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ AE + ++M KG+ P+ Y C+I+GY +G +++ R++ +M + G
Sbjct: 245 VIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHG 304
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
D ++L + + M GI V Y +L+ +T
Sbjct: 305 LEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYAT 356
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 80/193 (41%), Gaps = 10/193 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV+ +I +GQ ++A L L+ ++ G V+ Y +ID CK +
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLD-MTDQGIPPN--VVTYTIVIDGLCK---AQVV 255
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D Q+++ V +I G +GQ E +++EM GLEP F Y
Sbjct: 256 DRAEGVFQQMIDKG--VRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYG 313
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ + G + ++ + M G + D ++L Y LS M +L M +
Sbjct: 314 LLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN 373
Query: 289 GIPFSVRTYNSVL 301
GI + +N V
Sbjct: 374 GISPNHYIFNIVF 386
>gi|414876958|tpg|DAA54089.1| TPA: hypothetical protein ZEAMMB73_851506 [Zea mays]
gi|414876959|tpg|DAA54090.1| TPA: hypothetical protein ZEAMMB73_851506 [Zea mays]
Length = 1090
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G + ++EM +P+ Y ++ G+ + ED IV ++E
Sbjct: 280 TVIDGLCREGSVEKVTGFLDEMVRVDAKPNLITYTSLVGGFCKRDRWEDAFSIVRKLEQT 339
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTI 307
G VD ++++ S ++L R L +M++ GI S+ TYN+++N C
Sbjct: 340 GMVVDEYVYSILIDSLCKMDDLDRAFSLLTEMENKGIKASIITYNAIINGLCKAGHCEKA 399
Query: 308 MSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELED 343
+ + + + +++F S L L +N +++ V ++D
Sbjct: 400 VEISEGVAADNFTYSTL-LHGYINRGDITGVMAMKD 434
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/318 (21%), Positives = 126/318 (39%), Gaps = 55/318 (17%)
Query: 25 LTLVQCLTARLTKQGQRFLSSLALAVTRDSKAAS------RLISKFVASSPQFIALNALS 78
L + +T R + R SS+ +R KA + ++ +F P + L ++
Sbjct: 153 LRVFDIMTNRGCQVDDRICSSIVSGFSRTGKAGAGLHFYDKVKRQFSGFDPGLVTLTSVV 212
Query: 79 HLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEII------AFLDKQGQREEAE- 131
H L + ++ L MR E + ++ FL +G RE
Sbjct: 213 HALGLEGRTGEMAEL-----MREMECKGMNADAVFYGSMVHGYMSRGFL-MEGLREHRSM 266
Query: 132 ------------TLILETLSKLGSRER------ELV--------LFYCNLIDSFCKHDSK 165
T +++ L + GS E+ E+V + Y +L+ FCK D
Sbjct: 267 LGKGITADVINYTTVIDGLCREGSVEKVTGFLDEMVRVDAKPNLITYTSLVGGFCKRDR- 325
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
++D ++ + +L + + V +I LC+M A +L+ EM KG++ S
Sbjct: 326 --WEDAFSIVRKL--EQTGMVVDEYVYSILIDSLCKMDDLDRAFSLLTEMENKGIKASII 381
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y II G + G E I S+G D + +L Y + +++ ++ ++
Sbjct: 382 TYNAIINGLCKAGHCEKAVEI-----SEGVAADNFTYSTLLHGYINRGDITGVMAMKDRL 436
Query: 286 KDSGIPFSVRTYNSVLNS 303
+ SGI V T N ++ +
Sbjct: 437 EGSGISMDVVTCNVLIKA 454
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 91/194 (46%), Gaps = 15/194 (7%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L+ ++ K+ + E+A + I+ L + G E V Y LIDS CK D
Sbjct: 308 PNLITYTSLVGGFCKRDRWEDAFS-IVRKLEQTGMVVDEYV--YSILIDSLCKMDD---L 361
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D ++ L ++ N + ++I+GLC+ G +A + E G+ F Y
Sbjct: 362 DRAFSLLTEMENKGIKASI--ITYNAIINGLCKAGHCEKAVEISE-----GVAADNFTYS 414
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+++GY G + + + +++E G +D V N+++ + N+++ KM +
Sbjct: 415 TLLHGYINRGDITGVMAMKDRLEGSGISMDVVTCNVLIKALFMINKVNDAWSLFHKMPEI 474
Query: 289 GIPFSVRTYNSVLN 302
G+ + TY+++++
Sbjct: 475 GLRPNTITYHTIID 488
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++SGLC G EA L + + + P+ Y +I R GLL+D +++ +M +
Sbjct: 762 SVLSGLCHQGCLTEAFRLFDYLENSKMLPTIITYTILIGALCREGLLDDADQLFQKMSTK 821
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + T N+++S + + + + + M++ I T +++N
Sbjct: 822 GIKPTTRVYNLLISGHCNFGLTGKALELMSHMEELFILPDCFTLGAIING 871
>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
Length = 987
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 116 EIIAFLDKQGQ--REEAETLILETLSKLGSRERELVLF--------------YCNLIDSF 159
E +FL ++G + T +++ SK G+ + VL Y L+ +
Sbjct: 581 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK ++ ++ + L+Q+ + S V A +IS + + G+ A++L EM G
Sbjct: 641 CK---QKKLNEALSILDQM--TVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSG 695
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
+PS Y I Y ++G +E+ E ++ +ME DG D V N+ ++ G + R
Sbjct: 696 HKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMGYIDRAF 755
Query: 280 LWLQKMKDSGIPFSVRTY 297
L++M D+ + TY
Sbjct: 756 STLKRMVDASCEPNCWTY 773
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ +EAE L+ +++ + V+ + NLI+ +CK + DD + ++ SS+
Sbjct: 367 GKLDEAEELLNGAIARGFT---PTVITFTNLINGYCKAER---IDDALRVKSNMI--SSN 418
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ QA +I+ L + + EA+ + EM GL P+ Y II GY ++G++
Sbjct: 419 CKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAAL 478
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ME +G + ++ +L + + + KM++ GI V TY +++
Sbjct: 479 EVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQG 537
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + +G R E Y LI C+ R + + +V+ S+ + L
Sbjct: 236 LLMMMPLMGCRRNEYS--YTILIQGLCE---ARCVREALVLVFMMVHDGCSLNLHTYTL- 289
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I GLC+ G+ H+A L++EM ++G+ PS + Y +I GY + G ++D I ME +
Sbjct: 290 -LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQN 348
Query: 254 GTRVD 258
G D
Sbjct: 349 GCNPD 353
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 84/186 (45%), Gaps = 13/186 (6%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL-NQLV 179
L K G+ EEA + ++ L + Y +L+D F SK G D A L ++V
Sbjct: 573 LCKSGRAEEAYSFLVRKGVVLTK------VTYTSLVDGF----SKAGNTDFAAVLIEKMV 622
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
N + ++ ++ LC+ + +EA +++++M V G++ + Y II + G
Sbjct: 623 NEGCKADLYTYSV--LLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGK 680
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + + N+M S G + + +SSY + + +M+ G+ V TYN
Sbjct: 681 HDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNI 740
Query: 300 VLNSCS 305
+N C
Sbjct: 741 FINGCG 746
>gi|302771417|ref|XP_002969127.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
gi|300163632|gb|EFJ30243.1| hypothetical protein SELMODRAFT_61162 [Selaginella moellendorffii]
Length = 646
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
LNQL ++ S +K +MIS + G A L+EE+R L+P G Y C++ Y
Sbjct: 484 LNQLYDNGHSPDIK--VFNAMISMCAKRGWIERAVKLLEEIRKAQLKPDGVTYNCLMSMY 541
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
GR G+ E ++++M G + + N +L SY H + M + +
Sbjct: 542 GREGMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDN 601
Query: 295 RTYNSVLNSCSTI 307
T+N+++ S S++
Sbjct: 602 FTFNTLVGSYSSL 614
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 47/101 (46%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G H+AE ++ EMR G P+ Y ++Y Y + G ++D R+ M + R D
Sbjct: 545 GMYHKAEEVMSEMRRAGKAPNLITYNTLLYSYTKHGRMDDAARVFGDMVAARVRPDNFTF 604
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++ SY + ++ M + G + T+ ++L+
Sbjct: 605 NTLVGSYSSLGLYKEALSVIEYMTEHGCQPTQITFKALLDG 645
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 12/197 (6%)
Query: 76 ALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135
A + +LS H +L + A L+ + ++ + + +I+ L + + +E TL
Sbjct: 40 ATASILSVLGNHEQLPA-ALELFESLKQDESYSLDVYAYTSLISILSRARRFDEGITL-F 97
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ--ALK 193
ET+ + G R + Y ++D + KRG D++ R+ L + +
Sbjct: 98 ETMQREGQRGNAVT--YNVMLDLY----GKRG--DSWDRIQSLFQEMKDLEISPDDYTYN 149
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI+ + EA L +EM+ G P+ Y ++ YG+ G+ ++ ++ +ME+
Sbjct: 150 TMITACIQNSHCQEALRLFQEMKEAGCCPNRVTYNALLDVYGKGGMHKEASELLVEMEAA 209
Query: 254 GTRVDTVCSNMVLSSYG 270
G + V N ++++Y
Sbjct: 210 GISPNIVTYNELIAAYA 226
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++IS + +A EMR P+ Y +I YGR+ L+DM ++ M+
Sbjct: 255 TLISAFNRAERYEKALETFTEMRKTNCTPNIVTYNILIDIYGRMEKLDDMMKVFKFMQEK 314
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V N +L S+G+ L+ + ++MK +G V T+N +L C
Sbjct: 315 NCTPDLVTWNSLLKSFGNCGMLTEVSNVFREMKRAGYMPGVDTFN-ILIEC 364
>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 536
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDDTYARLNQLVN 180
G+ E+A L L +S G ++ Y LI FCK + + FDD V
Sbjct: 220 GKAEKAVEL-LGGMSGFGCLPD--IVTYNTLIKGFCKSNELKKANEMFDD--------VK 268
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SSS SMISG C+ G+ EA L+++M G+ P+ + ++ GY + G +
Sbjct: 269 SSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEM 328
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E I +M S G D V ++ Y ++++ ++M G+ + TY+ +
Sbjct: 329 HTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSIL 388
Query: 301 LNS 303
+N+
Sbjct: 389 INA 391
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 70/164 (42%), Gaps = 8/164 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +EA L L+ + +LG + + L+D + K ++ ++ S
Sbjct: 289 KAGKMQEASVL-LDDMLRLGIYPTNVT--FNVLVDGYAKAGEMHTAEEIRGKM-----IS 340
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ S+I G C +GQ ++ L EEM +G+ P+ F Y +I + L
Sbjct: 341 FGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLK 400
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
++ Q+ S N V+ + +++ ++ +++M+
Sbjct: 401 ARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEME 444
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI++ CK + + +L +S + + +I G C+ G+ +EA +
Sbjct: 385 YSILINALCKENRLLKARELLGQL-----ASKDIIPQPFMYNPVIDGFCKAGKVNEAIVI 439
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-- 269
+EEM K +P + +I G+ G + + I ++M + G D + + +LS
Sbjct: 440 VEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLK 499
Query: 270 -GDHNELSRMVLWLQKMK-DSGIPFSVRTYNSVLNSC 304
G E + K + + G P +T N L +C
Sbjct: 500 AGMAKEAYHLNQIAHKGQINDGAPLETKTANVTLAAC 536
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G+C G+ + A L + KGL+ + + Y +I G+ + GLL+ E +++ ME +G
Sbjct: 467 ILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENG 526
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
D+ N+ + E++R + +L M+D G T ++N ST
Sbjct: 527 CMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIINYLST 578
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 115/257 (44%), Gaps = 16/257 (6%)
Query: 98 YMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL 155
++R EE WNP +V + ++ L K G EA L LE K + LV + C L
Sbjct: 203 WLRKMEER--NWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGK--GIKPNLVTYTC-L 257
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
I C + + + L++++ V Q+L ++ LC+ G+ +A+++I M
Sbjct: 258 IQGLCNFGR---WKEAGSLLDEMM--KMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFM 312
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+ G P F Y +I Y +++ R+ M S G D V ++ + +
Sbjct: 313 ILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNI 372
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEV 335
++ + L +M G V T+ +++ + + L + + L++ + +V N +
Sbjct: 373 NKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVG---RPLAAKELFLNMHKYGQVPNLQTC 429
Query: 336 SVVKE-LEDSSVLDEAM 351
+++ + L S +L EA+
Sbjct: 430 AIILDGLCKSQLLSEAL 446
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A +LE + K G L Y L+ +FCK ++ D A L+
Sbjct: 306 LISFLCRKGLVEPALE-VLEQIPKYGCSPNSLS--YNPLLHAFCK---QKKMDKAMAFLD 359
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S Y + ++++ LC G+ A L+ +++ KG P Y +I G +
Sbjct: 360 LMV--SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 417
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ ++N+M S G + D + + + + + + + K++D GI +
Sbjct: 418 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 477
Query: 297 YNSVL 301
YN+++
Sbjct: 478 YNAII 482
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E ++ Q+ G
Sbjct: 271 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 330
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ + + +L M G + +YN++L +
Sbjct: 331 CSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 379
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A ++E++ G P+ Y +++ + + ++ ++ M S G
Sbjct: 306 LISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 365
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 366 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 414
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+++ CK + G+ L+++ + + + +++G+C+ G+ +A
Sbjct: 195 VVTYTILLEATCK---RSGYKQAMKLLDEMRDKGCTPDI--VTYNVVVNGICQEGRVDDA 249
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ + G EP+ Y ++ G ED E ++ +M G + V NM++S
Sbjct: 250 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF 309
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L+++ G + +YN +L++
Sbjct: 310 LCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHA 344
>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
Length = 845
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 109 WNP--KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---- 162
W P + A ++ F ++ + +EAE ++ E K + V+ +I+++CK
Sbjct: 285 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLA---PCVVTCTAVINAYCKEGRMS 341
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+ R + L +L +V+ +++ G C G+ H+A L+ +MR G+ P
Sbjct: 342 DALRVLE-----LMKLRGCKPNVWT----YNALVQGFCNEGKVHKAMTLLNKMRACGVNP 392
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G G +E R++ ME DG D N ++++ +
Sbjct: 393 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 452
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
++ GI + T+NS++N
Sbjct: 453 DSLETRGIKPNAVTFNSLING 473
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 81/191 (42%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A +L ++L G + + + +LI+ CK D + L
Sbjct: 435 LINALCKDGRTDQACSL-FDSLETRGIKPNAVT--FNSLINGLCKSGKA---DIAWKFLE 488
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V S+ S I LC+M E + I EM K ++PS Y +I+ +
Sbjct: 489 KMV--SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLK 546
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ R +M S G D V + +Y L+ L +M +G+
Sbjct: 547 ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMA 606
Query: 297 YNSVLNSCSTI 307
YN++++ ++I
Sbjct: 607 YNTLMDGHASI 617
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 44/185 (23%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC-------- 200
V+ Y LI+ C+ D+ ++ +Y +++ GLC
Sbjct: 223 VVSYATLIEGLCEAGR---IDEAVELFGEMDQPDMHMYA------ALVKGLCNAERGEEG 273
Query: 201 --------EMG-------------------QPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
E+G + EAE +++EM KGL P +I
Sbjct: 274 LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 333
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + G + D R++ M+ G + + N ++ + + ++ + + L KM+ G+
Sbjct: 334 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPD 393
Query: 294 VRTYN 298
TYN
Sbjct: 394 AVTYN 398
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 11/213 (5%)
Query: 94 AFPLYMRITEE---SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
F Y +I EE S Q P + +IA K G E+A +E+ K+ + +
Sbjct: 111 GFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKA----VESFGKMKDFGCKPDV 166
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
F N I K F A NQ++ + + R +++GLC+ G+ +A
Sbjct: 167 FTYNSILHVMVQ--KEVFLLALAVYNQMLKLNYNP--NRATFVILLNGLCKNGKTDDALK 222
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ +EM KG+ P+ Y I+ G + +D+ R++N M+ G D++ N +L +
Sbjct: 223 MFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFC 282
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ LQ + G ++ Y+S+++
Sbjct: 283 KLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDG 315
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN L+D FCK D+ +A L QL V + + S+I GL + E +
Sbjct: 274 CNALLDGFCKLGQ---IDEAFALL-QLFEKEGYV-LGIKGYSSLIDGLFRAKRYDEVQEW 328
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M G+EP Y +I G+ +G+++ ++N M G DT C N ++ + D
Sbjct: 329 CRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCD 388
Query: 272 HNELSRM-VLWLQKMKDSGIPFSVRTY---------NSVLNSCSTIMSMLQDL 314
L + L L+ K+ P S TY N +L+ I + +++L
Sbjct: 389 VGLLDKARSLQLEISKNDCFPTSC-TYTILICGMCRNGLLDEARQIFNQMENL 440
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 7/144 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN-SSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y LI FC+ G D YA LN L + + + ++I G C++G +
Sbjct: 341 VVLYTILIRGFCE----VGMVD-YA-LNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDK 394
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +L E+ P+ Y +I G R GLL++ +I NQME+ G + N ++
Sbjct: 395 ARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALID 454
Query: 268 SYGDHNELSRMVLWLQKMKDSGIP 291
EL KM+ P
Sbjct: 455 GLCKAGELEEARHLFYKMEIGKNP 478
>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
Length = 529
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQME 251
+++GLC++G+ + A ++IE+M+V G+ P+ Y +I GY GR+G + + I+ +M
Sbjct: 161 VVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMV 220
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
+ G + V N+++ + +S + +M+ G+ +V TYN ++N CS
Sbjct: 221 AKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCS 275
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 7/150 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LI+ FCK+ + + + + Q V+ ++ Y ++I C+ G+ +A L
Sbjct: 304 LINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYT------TLIDAYCKDGRMEDAFALYN 357
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
M +G+ P Y C+I G R G ++ ++N+M S D V N+++ S
Sbjct: 358 MMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKG 417
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + V L +M + G+ S TYN++++
Sbjct: 418 ESRKAVKLLDEMFEKGLNPSHVTYNTLMDG 447
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 70/179 (39%), Gaps = 36/179 (20%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSS------------------SSVYVKRQALK 193
Y LID++CK +D +A N +++ V R +
Sbjct: 336 YTTLIDAYCKDGR---MEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMN 392
Query: 194 SMIS---------------GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
M+S LC+ G+ +A L++EM KGL PS Y ++ GY R G
Sbjct: 393 EMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREG 452
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
L + +ME G + + V N+++ + L L +M + G+ + TY
Sbjct: 453 NLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTY 511
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y LI+ C D K D+ A +Q+V+S V + +I+G C+
Sbjct: 260 RPNVVTYNILINGLC-SDGK--VDEAVALRDQMVSSDLEPNVVTHNV--LINGFCKNKTV 314
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+EA NL +M +G++P+ Y +I Y + G +ED + N M G + N +
Sbjct: 315 NEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCL 374
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ ++ + +M + V TYN +++S
Sbjct: 375 IAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDS 412
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 194 SMISGLCEMG---QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I G C+MG + ++A+ +++EM KG+ P+ Y +I G+ + + R+ +M
Sbjct: 195 TLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEM 254
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G R + V N++++ ++ V +M S + +V T+N ++N
Sbjct: 255 QRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLING 307
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 2/155 (1%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK A L ++V + + +I G C+ A
Sbjct: 190 VITYNTLIDGYCKMGRIGKMYKADAILKEMV--AKGICPNEVTYNILIDGFCKDENVSGA 247
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ EM+ +GL P+ Y +I G G +++ + +QM S + V N++++
Sbjct: 248 MRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLING 307
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ + M+ G+ + TY +++++
Sbjct: 308 FCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDA 342
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 91/225 (40%), Gaps = 41/225 (18%)
Query: 54 SKAASRLISKFVASSPQFIALNALSH--LLSPDTTHPRLSSLAFPLYMRITEESWFQWNP 111
+K + I+ F Q + NA+++ L+ R+ AF LY + + F P
Sbjct: 311 NKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMED-AFALYNMMIDRGIF---P 366
Query: 112 KLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR--- 166
++ +IA L ++G + A +L+ E +SK S + V+ Y LIDS CK R
Sbjct: 367 EVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSAD---VVTYNILIDSLCKKGESRKAV 423
Query: 167 ---------GFDDTYARLNQLVNSSSSVYVKRQAL------------------KSMISGL 199
G + ++ N L++ R AL +I G
Sbjct: 424 KLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGF 483
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
C G+ +A L+ EM +GL P+ Y+ I G + D+E
Sbjct: 484 CLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDIE 528
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 106/259 (40%), Gaps = 52/259 (20%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS-FCKHD 163
+ Q N + +I L K GQ A L+ E + K+G R Y L+ F +HD
Sbjct: 377 AGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMI-KVGLRPDTFT--YNPLMQGHFQQHD 433
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D + LN++ NS V + MI+GLC+ G+ EA NL+EEM +GL+P+
Sbjct: 434 K----DGAFELLNEMRNSGILPNVYSYGI--MINGLCQNGESKEAGNLLEEMISEGLKPN 487
Query: 224 GFEYKCIIYGYGR-----------------------------------LGLLEDMERIVN 248
F Y +I G+ + +G +E+ E
Sbjct: 488 AFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYA 547
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------N 302
Q++ G D + ++ Y L + L++M +SG+ + TY +L N
Sbjct: 548 QVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSN 607
Query: 303 SCSTIMSMLQD-LNSNDFP 320
+ S+LQ L S D P
Sbjct: 608 DYEKVSSILQSMLGSGDKP 626
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GL +G+ EAE +++ +GL P F Y +I+GY + G LE ++++ QM +
Sbjct: 528 SLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNS 587
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + + +L Y N+ ++ LQ M SG Y V+ + S
Sbjct: 588 GLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLS-------- 639
Query: 314 LNSNDFPLSILELTEV 329
S + ++ + LTEV
Sbjct: 640 -RSENMEVAFMVLTEV 654
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISGLC++ +A L++EM +GLEP Y +I G+ R G + + + + +
Sbjct: 668 SLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAK 727
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + V ++ + +++ ++M D GI YN + CS + Q
Sbjct: 728 GLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATGCSDAADLEQA 787
Query: 314 L 314
L
Sbjct: 788 L 788
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y I++ CK R FD ++ ++ MISGLC G EA
Sbjct: 243 VYTYSTFIEAHCK---ARDFDAAKKVFEEMRRRDCAM--NEVTYNVMISGLCRSGAVEEA 297
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
EEM GL P F Y ++ G + L++ + ++++M G + + V ++
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ + + L++M +G+ + Y++++ I
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKI 396
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSS 182
+G R + +L+ +S G + ++ Y L+D F K + FD L +++ S
Sbjct: 325 KGSRLKEAKALLDEMSCSGLKPN--IVVYGTLVDGFMKEGKTAEAFD----ILKEMI--S 376
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-------G 235
+ V + ++I GLC++GQ A L++EM GL P F Y ++ G+ G
Sbjct: 377 AGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDG 436
Query: 236 RLGLLEDMER--IVNQMESDGTRVDTVCSN 263
LL +M I+ + S G ++ +C N
Sbjct: 437 AFELLNEMRNSGILPNVYSYGIMINGLCQN 466
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC+ + EA+ L++EM GL+P+ Y ++ G+ + G + I+ +M S
Sbjct: 318 ALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISA 377
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + + + ++ +L R L++M G+ TYN ++
Sbjct: 378 GVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQG 427
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 54/117 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I G C+ G +A+ L+ +M GL+P+ Y ++ GY + E + I+ M
Sbjct: 563 GLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGS 622
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G + D +V+ + + + L +++ +G+ + Y+S+++ I M
Sbjct: 623 GDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADM 679
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G A N+ + + KGL P+ Y +I G + G + D + +M
Sbjct: 703 ALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEMLDR 762
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N++ + D +L + + ++M + G +V +N++++
Sbjct: 763 GIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHG 811
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 60/109 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ LC+ G+ EA + + M +GLEP Y+ ++ GY G L +M +++ M +
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + D N+++ +Y ++ + +L KM+ G+ +V Y +V++
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP +V +I L K G ++A E +I E L+ ++ Y +LI C D
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN-------IIVYTSLIHGLCTCD 460
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 461 K---WDKAEELILEMLDRG--ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 515
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G G +++ +++ M S G + D V +++ Y + + + +
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 575
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M SG+ ++ TYN +L
Sbjct: 576 EMVSSGVSPNIITYNIIL 593
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVYV 187
+A ++L +++LG V Y NL+ C + S+ + + + S V
Sbjct: 145 DAMDIVLRRMTELGCIPD--VFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVV 202
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+ ++++G + G +A + EM +G+ P Y II + ++ ++
Sbjct: 203 ---SYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N M +G D + N +L Y + + L+KM+ G+ +V TY+S++N
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 39/209 (18%)
Query: 128 EEAETLILETLSKLGSRERELVL---FYCNLIDSFCKH----DSKRGFD----------- 169
++AE LILE L +R + L F+ ++IDS CK +S++ FD
Sbjct: 463 DKAEELILEML------DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDI 516
Query: 170 DTYARL-------------NQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAENLIEE 214
TY L +L+ S SV VK + ++I+G C + + +A L +E
Sbjct: 517 ITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE 576
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P+ Y I+ G + + + GT+++ N++L +N
Sbjct: 577 MVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNL 636
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Q + + + RT+N ++ +
Sbjct: 637 TDEALRMFQNLCLTDLQLETRTFNIMIGA 665
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 51/111 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ G +A E+M +GL P+ Y +I+G + E ++ +M
Sbjct: 416 TVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDR 475
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G ++T+ N ++ S+ + M G+ + TYN++++ C
Sbjct: 476 GICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGC 526
>gi|357455845|ref|XP_003598203.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355487251|gb|AES68454.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 503
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 80/170 (47%), Gaps = 21/170 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS-MISGLCEMGQPHEAEN 210
+ L+D+ CK+ + +L N +S+ +V + + +I G C++G+ A +
Sbjct: 169 FTYLLDTLCKYGYVK-------HACELFNRNSNRFVADVKMYTVLIYGWCKIGRFKTALS 221
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE----------DMERIVNQMESDGTRVDTV 260
+ EM+VKG+EP+ Y I+ G R L D E++ ++M G D
Sbjct: 222 FLNEMKVKGVEPNVVTYNVILNGICRKASLHPEERFERTIRDAEKVFDEMRESGIEPDVT 281
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN---SCSTI 307
++VL Y ++ ++ L MK+ GI +V TY SV+ SC I
Sbjct: 282 SFSIVLHVYSRAHKPQLVLDKLGLMKEKGICPNVVTYTSVIKCLCSCGRI 331
>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 901
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 62/114 (54%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
A + I G C+ G+ ++A L+EEM+ KG +P+ Y +I G ++ L++ + +
Sbjct: 618 HAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEE 677
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S+G ++ V + ++ +G + L ++++ G+ +V T+N +L++
Sbjct: 678 AKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDA 731
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 111/252 (44%), Gaps = 22/252 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L KQG+ ++A L + L S + + Y +LI SF K K +D +
Sbjct: 483 LIDGLGKQGRVDDAYRLYEQMLD---SDKIPNAVVYTSLIKSFFKCGRK---EDGHKIFK 536
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++++ S ++ L + + + + G+ + L EE++ +G P Y +I+G +
Sbjct: 537 EMIHRGCSPDLR--LLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVK 594
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N + + ++++ L++MK G +V T
Sbjct: 595 AGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVT 654
Query: 297 YNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELE 342
Y SV++ + I + ++ SN L+++ + +++ +E +++EL
Sbjct: 655 YGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELM 714
Query: 343 DSSVLDEAMKWD 354
+ W+
Sbjct: 715 QKGLTPNVYTWN 726
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 620 YNTFIDGFCKSGK---VNKAYQLLEEMKTKGRQPTVVTYG--SVIDGLAKIDRLDEAYML 674
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + GLE + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 675 FEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVK 734
Query: 272 HNELSRMVLWLQKMKD-SGIPFSVRTYNSVLNS 303
E++ ++ Q MK+ G P + TY+ ++N
Sbjct: 735 AEEINEALVCFQNMKNLKGTPNHI-TYSILING 766
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI LC+ + EA + E+M P + Y +I GYG G ++ ++ + ++
Sbjct: 308 SMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKAR 367
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + N +L+ G L + ++MK P ++ TYN +++
Sbjct: 368 GCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP-NLSTYNVLID 415
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 6/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ++I CK + + + ++ Q N + A +MI G G+ EA +L
Sbjct: 306 YTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAY-----AYNTMIMGYGSAGKFDEAYSL 360
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E + +G PS Y CI+ G+ G L + R +M+ D + N+++
Sbjct: 361 LERQKARGCIPSVIAYNCILTCLGKKGRLGEALRTFEEMKKDAAP-NLSTYNVLIDMLCK 419
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E+ MK++G+ +V T N +++
Sbjct: 420 AGEVEAAFKVRDAMKEAGLFPNVMTVNIMID 450
>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
Length = 676
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 93/183 (50%), Gaps = 11/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKHDSKRGFDDTYARLNQLVNS 181
++G+ EEA+ L L+ + ++ L C ++ +FC+ R D + R++++
Sbjct: 193 REGRFEEADAL----LAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTP 248
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ V + I GLCE G +A +++EEM KGL+P+ + + +I G ++G +E
Sbjct: 249 PNMV-----NYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWME 303
Query: 242 DMERIVNQM-ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R+ ++ +S + + +++ Y +L+R + L +M + G+ + TY ++
Sbjct: 304 RAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTL 363
Query: 301 LNS 303
++
Sbjct: 364 IHG 366
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 82/187 (43%), Gaps = 22/187 (11%)
Query: 131 ETLILETLSKLGSRERELVLF---------------YCNLIDSFCKHDSKRGFDDTYARL 175
T +++ L K+G ER LF Y +I +CK + R+
Sbjct: 289 HTSLIDGLCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRM 348
Query: 176 -NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
Q + +++ Y ++I G C+ G A L+ +M+++G P+ + Y II G+
Sbjct: 349 VEQGLAPNTNTYT------TLIHGHCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGF 402
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G +++ +++ S G +D V ++++ + ++ + ++M + +
Sbjct: 403 CKKGKIQEAYKVLRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDI 462
Query: 295 RTYNSVL 301
TY +++
Sbjct: 463 HTYTTII 469
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/210 (20%), Positives = 84/210 (40%), Gaps = 12/210 (5%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L++++ + S ++ N +I K+G+ AE L+ + + + Y
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNT---YT 361
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
LI CK S FD + +N+ L ++Y ++I G C+ G+ EA +
Sbjct: 362 TLIHGHCKGGS---FDRAFELMNKMKLEGFLPNIYT----YNAIIGGFCKKGKIQEAYKV 414
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +GL Y +I + + G + + QM D +++ Y
Sbjct: 415 LRMATSQGLHLDKVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQ 474
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + K G+ + +TY S++
Sbjct: 475 QRQMEQSQQLFDKCLSIGLVPTKQTYTSMI 504
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 79/168 (47%), Gaps = 12/168 (7%)
Query: 147 ELVLFYCNLIDSFCKHDSKRGFD---DTYARLNQLVNSSS------SVYVKRQ--ALKSM 195
E FY L+D+ ++K F+ RL +L ++ + S V+R + +M
Sbjct: 99 EACAFYLQLLDAGLPPEAKL-FNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTM 157
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
ISG+C G AE L M G+ P + Y +I G R+G +ED + +M G
Sbjct: 158 ISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGM 217
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V +++ ++ + M+ ++M++ G+ TYN+++N
Sbjct: 218 KPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNG 265
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID +CK + D + Q + + V + ++ISGL + G+ +AE +
Sbjct: 294 YTTLIDGYCKEEEL----DMAMEIKQNM-VAEGVGLDEVTYTALISGLSKAGRSADAERV 348
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM GLEP Y +I + R G ++ R++ +M++ G + V N++++ +
Sbjct: 349 LGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCK 408
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + L M + G+ TYN +L+
Sbjct: 409 LGQMKNADMLLNAMINIGVSPDDITYNILLDG 440
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 93/252 (36%), Gaps = 57/252 (22%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAE--TLILETLSKLG-------------SRE-REL 148
S F P+ A + LD G EA+ +++ L +LG SR R
Sbjct: 92 SRFPTAPEACAFYLQLLD-AGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRT 150
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +I C+ G + + R+++ + VY ++I GLC +G+ +A
Sbjct: 151 VVSFNTMISGMCRAGDLDGAETLHRRMSE-AGVTPDVYT----YGALIQGLCRVGRIEDA 205
Query: 209 ENLIE-----------------------------------EMRVKGLEPSGFEYKCIIYG 233
+ E EMR +G+ P Y I+ G
Sbjct: 206 RGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNG 265
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
R L+ IV +M S G R DTV ++ Y EL + Q M G+
Sbjct: 266 LCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLD 325
Query: 294 VRTYNSVLNSCS 305
TY ++++ S
Sbjct: 326 EVTYTALISGLS 337
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 89/224 (39%), Gaps = 43/224 (19%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I L + G+ E+A + E + G + +V + LID+ CK +G +T
Sbjct: 190 GALIQGLCRVGRIEDARG-VFEKMCGRGMKPNAVV--FTILIDAHCK----KGDAETMLE 242
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L++ + V ++++GLC A ++ EMR GL P Y +I GY
Sbjct: 243 LHREMRERG-VRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGY 301
Query: 235 GR------------------LGLLE-----------------DMERIVNQMESDGTRVDT 259
+ +GL E D ER++ +M G D
Sbjct: 302 CKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDN 361
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
MV+ ++ ++ + L++M++ G V TYN ++N
Sbjct: 362 TTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNG 405
Score = 38.5 bits (88), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 10/131 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYARL 175
+I+ L K G+ +AE ++ E + + Y +ID+FC K D K G L
Sbjct: 332 LISGLSKAGRSADAERVLGEMMEAGLEPDNTT---YTMVIDAFCRKGDVKTGL----RLL 384
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ N V +++G C++GQ A+ L+ M G+ P Y ++ G+
Sbjct: 385 KEMQNKGRKPGV--VTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHC 442
Query: 236 RLGLLEDMERI 246
+ G + D+E +
Sbjct: 443 KHGKVTDIEEL 453
>gi|242084804|ref|XP_002442827.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
gi|241943520|gb|EES16665.1| hypothetical protein SORBIDRAFT_08g003450 [Sorghum bicolor]
Length = 899
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 91/196 (46%), Gaps = 17/196 (8%)
Query: 116 EIIAFLDKQGQ--REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS--------- 164
E +FL ++G + T +++ SK G+ + VL +++ CK DS
Sbjct: 492 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIE-KMVNEGCKADSYTYSVLLQA 550
Query: 165 ---KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
++ ++ + L+Q+ + S V A +IS + + G+ A+++ EM G +
Sbjct: 551 LCKQKKLNEALSILDQM--TLSGVKCNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHK 608
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
PS Y I Y ++G +E+ E ++ +ME DG D V N+ ++ G + R
Sbjct: 609 PSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNVFINGCGHMGYMDRAFST 668
Query: 282 LQKMKDSGIPFSVRTY 297
L++M D+ + TY
Sbjct: 669 LKRMIDASCEPNYWTY 684
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 75/155 (48%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + N+I+ +CK ++R D + + L SS+ + QA +I+ L + + EA
Sbjct: 299 VITFTNIINGYCK--AERIDDALRVKTSML---SSNCKLDLQAYGVLINVLIKKCRFKEA 353
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + EM GL P+ Y II GY ++G + + ME +G R + + ++
Sbjct: 354 KETVSEMFANGLAPNVVIYTSIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYG 413
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + + KM++ GI V TY +++
Sbjct: 414 LIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 448
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + +G R E Y LI C+ R + L +V S+ + L
Sbjct: 147 LLMMMPLMGCRRNEYS--YTILIQGLCE---TRCVREALVLLVMMVQDGCSLNLHTYTL- 200
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I GLC+ G+ H A ++EEM ++G+ PS + Y +I GY + G ++D I ME +
Sbjct: 201 -LIKGLCKEGRIHGARRVLEEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMERN 259
Query: 254 GTRVDTVCSNMVLSSYG 270
G D N+++ YG
Sbjct: 260 GCNPDDWTYNILI--YG 274
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 13/191 (6%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL-NQLV 179
L K G+ EEA + ++ L + Y +L+D F SK G D A L ++V
Sbjct: 484 LCKSGRAEEAYSFLVRKGVVLTK------VTYTSLVDGF----SKAGNTDFAAVLIEKMV 533
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
N ++ LC+ + +EA +++++M + G++ + Y II + G
Sbjct: 534 NEGCKA--DSYTYSVLLQALCKQKKLNEALSILDQMTLSGVKCNIVAYTIIISEMIKEGK 591
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + + N+M S G + + +SSY ++ + +M+ G+ V TYN
Sbjct: 592 HDHAKSMFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVAPDVVTYNV 651
Query: 300 VLNSCSTIMSM 310
+N C + M
Sbjct: 652 FINGCGHMGYM 662
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC +P EAE L+ + V+G P+ + II GY + ++D R+ M S
Sbjct: 271 LIYGLCGE-KPDEAEELLNDAIVRGFTPTVITFTNIINGYCKAERIDDALRVKTSMLSSN 329
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++D ++++ + +M +G+ +V Y S+++
Sbjct: 330 CKLDLQAYGVLINVLIKKCRFKEAKETVSEMFANGLAPNVVIYTSIIDG 378
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 45/105 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C++G+ A + M +G P+ + Y +IYG + L ++ +M+ D
Sbjct: 374 SIIDGYCKVGKVGAALEVFRLMEHEGCRPNAWTYSSLIYGLIQDQKLHKAMALITKMQED 433
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + ++ +E + M+ +G+ + YN
Sbjct: 434 GITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYN 478
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 99/228 (43%), Gaps = 41/228 (17%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---DSK 165
P +V A +I +GQ ++A L LE + + G + V+ Y +ID CK D
Sbjct: 201 PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDR-GIQPN--VVTYTTVIDGLCKAQVVDRA 257
Query: 166 RGF------------DDTYARLNQLVNSSSSVYVKRQALK------------------SM 195
G +DTY N L++ S+ ++ ++ S+
Sbjct: 258 EGVFQQMIDKGVKPDNDTY---NCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSL 314
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
++ LC G+ EA L + M KG++P+ Y +I+GY G L +M ++N M +G
Sbjct: 315 LNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N++ ++Y + + KMK G+ V Y +++++
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDA 422
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 95/210 (45%), Gaps = 7/210 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
F + I + W + N ++ +++ L + EA ++++ + +LG V+ Y
Sbjct: 113 GFATFGLILKSGW-RVNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPD--VVSYN 169
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVKRQALKSMISGLCEMGQPHEAENLI 212
L+ FC + KR ++ L+ + +S S + +I+G GQ +A NL
Sbjct: 170 TLLKGFC--NEKRA-EEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQVDKAYNLF 226
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EM +G++P+ Y +I G + +++ E + QM G + D N ++ Y
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +V L++M G+ TY S+LN
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLN 316
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C +G+ EA ++ M GL+P + Y +++GY R G ++D + +M +
Sbjct: 523 TLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRN 582
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
G V + +L S M SG +++ YN +LN S
Sbjct: 583 GITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEA 642
Query: 308 MSMLQDLNSNDFPLSI 323
+ Q L S DF L I
Sbjct: 643 FKLFQSLCSKDFQLEI 658
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 2/123 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ AE + ++M KG++P Y C+I+GY +G +++ R++ +M +
Sbjct: 243 TVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAH 302
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST--IMSML 311
G + D +L+ ++ M GI +V Y +++ +T +S +
Sbjct: 303 GLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEM 362
Query: 312 QDL 314
DL
Sbjct: 363 HDL 365
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 59/130 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC++G+ +A +M +G+ P+ F + ++YG + E + +M +
Sbjct: 418 ALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ 477
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G R D V N +L + ++ + + M+ G V +Y +++ + + +
Sbjct: 478 GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEA 537
Query: 314 LNSNDFPLSI 323
S D LS+
Sbjct: 538 AKSLDVMLSV 547
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ ++A +L E +++ + +LV Y L D CK+ R D A L + S+
Sbjct: 399 GRLQDAISLFHEMVAR--GQIPDLVT-YRTLSDYLCKN---RHLDKAMALLKAIEGSNWD 452
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ Q +++ G+C G+ +A +L + KGL+P+ + Y +I+G + GLL +
Sbjct: 453 PDI--QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEAS 510
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ ++M +G + N++ + +NE R + L++M G V T
Sbjct: 511 KLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 562
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 9/217 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L+ ++ E FQ N +I L K G A L L ++ + G+ + +V+F
Sbjct: 159 ALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRL-LRSMEQ-GNCQPNVVVF-S 214
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LIDS CK R + + ++++ S + S+I GLC++ + L+
Sbjct: 215 TLIDSLCK---DRQVTEAFNIFSEMITKGISPNI--VTYNSLIHGLCKLCEWKHVTTLMN 269
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM + P F ++ + G++ + +V+ M G + V N ++ + N
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
E+ V M +V +YN+++N I S+
Sbjct: 330 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSV 366
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 15/254 (5%)
Query: 50 VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
VT S +I+K + SP + N+L H L +++L + F
Sbjct: 226 VTEAFNIFSEMITKGI--SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N ++ L K+G EA ++ + + G V+ Y L+D C + D
Sbjct: 284 N-----TVVDALCKEGMVAEAHDVV-DMMIHRGVEPN--VVTYNALMDGHCLRNE---VD 332
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ +V+ V + ++I+G C++ +A L EEM + L P+ Y
Sbjct: 333 VAVKVFDTMVHKDCVANVI--SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+G +G L+D + ++M + G D V + + L + + L+ ++ S
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450
Query: 290 IPFSVRTYNSVLNS 303
++ Y ++L+
Sbjct: 451 WDPDIQIYTTILDG 464
>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
Length = 580
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 93/197 (47%), Gaps = 8/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L ++ + +EA+ L + L + S + V+ + +ID C + + + + L
Sbjct: 389 LIYVLSRRNRMKEADDLFEKILDQGVSPD---VIMFNAMIDGHCANGN---VERAFMLLK 442
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ SV +++ G C G+ EA L++EM+ +G++P Y +I GYGR
Sbjct: 443 EM--DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGR 500
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++D + ++M S G + N ++ + E L++M + GI T
Sbjct: 501 RGDIKDAFXVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDST 560
Query: 297 YNSVLNSCSTIMSMLQD 313
Y S++ + ++++D
Sbjct: 561 YLSLIEGMGNVDTLVED 577
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G G A +++ MRVKG+EP + Y +I G + G LE+ + ++M
Sbjct: 213 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 272
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ Y + +L R + +M GI SV TYN ++++
Sbjct: 273 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHA 322
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 86/190 (45%), Gaps = 10/190 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYA 173
+I+ + K+G+ EEA L + + ++G + Y LID +C K D +R F
Sbjct: 247 GSLISGMCKEGRLEEASGL-FDKMVEIGLVPNAVT--YNTLIDGYCNKGDLERAFSYRDE 303
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S S Y ++ L G+ EA+++I+EMR KG+ P Y +I G
Sbjct: 304 MVKKGIMPSVSTY------NLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILING 357
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R G + + N+M S G V ++ N + +K+ D G+
Sbjct: 358 YSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPD 417
Query: 294 VRTYNSVLNS 303
V +N++++
Sbjct: 418 VIMFNAMIDG 427
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 52/112 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG+C+ G+ EA L ++M GL P+ Y +I GY G LE ++M
Sbjct: 248 SLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKK 307
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G N+++ + + +++M+ GI TYN ++N S
Sbjct: 308 GIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYS 359
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 124 QGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCK-HDSKRGFDDTYARLNQLV 179
+G+ EA+ +I E R++ ++ + Y LI+ + + ++KR FD L++ +
Sbjct: 326 EGRMGEADDMIKEM------RKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGI 379
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ Y S+I L + EA++L E++ +G+ P + +I G+ G
Sbjct: 380 EPTHVTYT------SLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGN 433
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+E ++ +M+ D V N ++ ++ + L +MK GI +YN+
Sbjct: 434 VERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNT 493
Query: 300 VLNS 303
+++
Sbjct: 494 LISG 497
>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
Length = 636
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 61/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A +L E+M+ GL P Y +I GYG++GLL++ + +M+ G
Sbjct: 138 MIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMG 197
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++S+ + R + ++MKD + +V +Y++++++
Sbjct: 198 CEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDA 246
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 108/244 (44%), Gaps = 19/244 (7%)
Query: 63 KFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAF 120
KF+ P I NAL + R AF + + ++ P +++ +I
Sbjct: 194 KFMGCEPDVITYNALINSFCKFKGMLR----AFEFFREMKDKDL---KPNVISYSTLIDA 246
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLV 179
L K+G + A ++ ++++G E Y +LID+ CK + F L + V
Sbjct: 247 LCKEGMMQMAIKFFVD-MTRVGLLPNEFT--YSSLIDANCKAGNLGEAFMLADEMLQEHV 303
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ + Y +++ GLCE G +EAE L M G+ P+ Y +I+G+ ++
Sbjct: 304 DLNIVTYT------TLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRS 357
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
++ + N+M + D + ++ ++L + + +MK+SGI + Y +
Sbjct: 358 MDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTT 417
Query: 300 VLNS 303
++++
Sbjct: 418 LMDA 421
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+ES NP + ++ K G R EA L LE + LG+ V+ +C LID CK
Sbjct: 404 KESGIGANPVIYTTLMDAYFKAGNRTEAINL-LEEMRDLGTEVT--VVTFCALIDGLCKR 460
Query: 163 DSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
+ + R+ + + + +VY ++I GLC+ +A+ L +EM+ K +
Sbjct: 461 GLVQEAIYYFGRMPDHDLQPNVAVYT------ALIDGLCKNNCIGDAKKLFDEMQDKNMI 514
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P Y +I G + G ++ + N+M G +D ++ ++ + +
Sbjct: 515 PDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKF 574
Query: 282 LQKMKDSGI 290
L +M GI
Sbjct: 575 LAEMIGKGI 583
Score = 46.2 bits (108), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 56/128 (43%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V K ++ + + L + G+ + + +M G+ P+ F Y +I + G +
Sbjct: 93 VLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTAR 152
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ QM+ G D V N ++ YG L V ++MK G V TYN+++NS
Sbjct: 153 SLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSF 212
Query: 305 STIMSMLQ 312
ML+
Sbjct: 213 CKFKGMLR 220
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+D C+ ++ + + + + V QA ++I G ++ +A
Sbjct: 307 IVTYTTLLDGLCEEGMMNEAEELFRAMGK-----AGVTPNLQAYTALIHGHIKVRSMDKA 361
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EMR K ++P + I++G LE+ + I+ +M+ G + V ++ +
Sbjct: 362 MELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDA 421
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + L++M+D G +V T+ ++++
Sbjct: 422 YFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDG 456
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 60/109 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ LC+ G+ EA + + M +GLEP Y+ ++ GY G L +M +++ M +
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + D N+++ +Y ++ + +L KM+ G+ +V Y +V++
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 419
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP +V +I L K G ++A E +I E L+ ++ Y +LI C D
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN-------IIVYTSLIHGLCTCD 460
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 461 K---WDKAEELILEMLDRG--ICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 515
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G G +++ +++ M S G + D V +++ Y + + + +
Sbjct: 516 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFK 575
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M SG+ ++ TYN +L
Sbjct: 576 EMVSSGVSPNIITYNIIL 593
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 77/175 (44%), Gaps = 6/175 (3%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVYV 187
+A ++L +++LG V Y NL+ C + S+ + + + S V
Sbjct: 145 DAMDIVLRRMTELGCIPD--VFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVV 202
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
+ ++++G + G +A + EM +G+ P Y II + ++ ++
Sbjct: 203 ---SYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVL 259
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N M +G D + N +L Y + + L+KM+ G+ +V TY+S++N
Sbjct: 260 NTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMN 314
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 39/209 (18%)
Query: 128 EEAETLILETLSKLGSRERELVL---FYCNLIDSFCKH----DSKRGFD----------- 169
++AE LILE L +R + L F+ ++IDS CK +S++ FD
Sbjct: 463 DKAEELILEML------DRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDI 516
Query: 170 DTYARL-------------NQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAENLIEE 214
TY L +L+ S SV VK + ++I+G C + + +A L +E
Sbjct: 517 ITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKE 576
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P+ Y I+ G + + + GT+++ N++L +N
Sbjct: 577 MVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNL 636
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Q + + + RT+N ++ +
Sbjct: 637 TDEALRMFQNLCLTDLQLETRTFNIMIGA 665
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ ++A +L E +++ + +LV Y L D CK+ R D A L + S+
Sbjct: 399 GRLQDAISLFHEMVAR--GQIPDLVT-YRTLSDYLCKN---RHLDKAMALLKAIEGSNWD 452
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ Q +++ G+C G+ +A +L + KGL+P+ + Y +I+G + GLL +
Sbjct: 453 PDI--QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEAS 510
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ ++M +G + N++ + +NE R + L++M G V T
Sbjct: 511 KLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 562
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 93/217 (42%), Gaps = 9/217 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L+ ++ E FQ N +I L K G A L L ++ + G+ + +V+F
Sbjct: 159 ALHLFDKMIGEG-FQPNVVTYGTLINGLCKVGNTSAAIRL-LRSMEQ-GNCQPNVVVF-S 214
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LIDS CK R + + ++++ S + S+I GLC++ + L+
Sbjct: 215 TLIDSLCK---DRQVTEAFNIFSEMITKGISPNI--VTYNSLIHGLCKLCEWKHVTTLMN 269
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM + P F ++ + G++ + +V+ M G + V N ++ + N
Sbjct: 270 EMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRN 329
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
E+ V M +V +YN+++N I S+
Sbjct: 330 EVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSV 366
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 104/254 (40%), Gaps = 15/254 (5%)
Query: 50 VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
VT S +I+K + SP + N+L H L +++L + F
Sbjct: 226 VTEAFNIFSEMITKGI--SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 283
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N ++ L K+G EA ++ + + G V+ Y L+D C + D
Sbjct: 284 N-----TVVDALCKEGMVAEAHDVV-DMMIHRGVEPN--VVTYNALMDGHCLRNE---VD 332
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ +V+ V + ++I+G C++ +A L EEM + L P+ Y
Sbjct: 333 VAVKVFDTMVHKDCVANVI--SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 390
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+G +G L+D + ++M + G D V + + L + + L+ ++ S
Sbjct: 391 LIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN 450
Query: 290 IPFSVRTYNSVLNS 303
++ Y ++L+
Sbjct: 451 WDPDIQIYTTILDG 464
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 84/172 (48%), Gaps = 8/172 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ ++A +L E +++ + +LV Y L D CK+ R D A L + S+
Sbjct: 339 GRLQDAISLFHEMVAR--GQIPDLVT-YRTLSDYLCKN---RHLDKAMALLKAIEGSNWD 392
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ Q +++ G+C G+ +A +L + KGL+P+ + Y +I+G + GLL +
Sbjct: 393 PDI--QIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEAS 450
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ ++M +G + N++ + +NE R + L++M G V T
Sbjct: 451 KLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVST 502
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 91/200 (45%), Gaps = 14/200 (7%)
Query: 110 NPKLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
N K++ ++ F L K+G A ++ + + K G V+ Y L+D C
Sbjct: 701 NSKIMPNVVVFSTVVDALCKEGMIAIAHDVV-DMMIKRGVEPD--VVTYTALMDGHCL-- 755
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ D+ + +V+ V+ + +I+G C++ + +A L+E+M ++GL
Sbjct: 756 -RSEMDEAVKVFDTMVHKGCVPNVRSYNI--LINGYCQIQRMDKAMGLLEQMSLQGLIAD 812
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I+G +G L+ + ++M + G D V ++L ++ L+ ++ L+
Sbjct: 813 TVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLK 872
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
++ S + + YN ++
Sbjct: 873 AIEGSNLDADILVYNIAIDG 892
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC+ Q EA N+ EM KG+ P+ Y +I+G +L + + ++N+M
Sbjct: 155 TLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDS 214
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N V+ + ++ + M G+ +V TYN++++
Sbjct: 215 KIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 264
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 96/240 (40%), Gaps = 19/240 (7%)
Query: 72 IALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAE 131
I +N+L HL D AF +I + Q + +I L +G+ EA
Sbjct: 85 IVINSLCHLNRVD--------FAFSALAKILKLG-HQPDATTFTTLIRGLCVEGKIGEA- 134
Query: 132 TLILETLSKL-GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190
L K+ G + V+ Y LI+ CK R + + ++++ S +
Sbjct: 135 ---LHLFDKMIGEGFQPNVVTYGTLINGLCK---DRQVTEAFNIFSEMITKGISPNI--V 186
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
S+I GLC++ + L+ EM + P F ++ + G++ + +V+ M
Sbjct: 187 TYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM 246
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G + V N ++ + NE+ V M +V +YN+++N I S+
Sbjct: 247 IHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSV 306
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 57/255 (22%), Positives = 107/255 (41%), Gaps = 17/255 (6%)
Query: 50 VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
VT S +I+K + SP + N+L H L +++L + F
Sbjct: 166 VTEAFNIFSEMITKGI--SPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTL 223
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N ++ L K+G EA ++ + + G V+ Y L+D C + D
Sbjct: 224 N-----TVVDALCKEGMVAEAHDVV-DMMIHRGVEPN--VVTYNALMDGHCL---RNEVD 272
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ +V+ V + ++I+G C++ +A L EEM + L P+ Y
Sbjct: 273 VAVKVFDTMVHKDCVANVI--SYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNT 330
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDS 288
+I+G +G L+D + ++M + G D V + LS Y N L + + L+ ++ S
Sbjct: 331 LIHGLCHVGRLQDAISLFHEMVARGQIPDLV-TYRTLSDYLCKNRHLDKAMALLKAIEGS 389
Query: 289 GIPFSVRTYNSVLNS 303
++ Y ++L+
Sbjct: 390 NWDPDIQIYTTILDG 404
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
I G+C G+ A +L + KGL+P Y +I+G + GLL++ ++ +M+ +
Sbjct: 890 IDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDEN 947
>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 512
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ +EA+ + + + K + ++ Y +L++ +C + + + + Q+
Sbjct: 291 KEGKVKEAKNVFVVMMKK---DVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQI---- 343
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + MISG C++ EA L EEM K + P Y +I G + G +
Sbjct: 344 -GVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISY 402
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ +M G + + N +L + ++ + + + L K+KD I SV TYN ++N
Sbjct: 403 ALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCTYNILIN 462
Query: 303 S 303
Sbjct: 463 G 463
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 88/192 (45%), Gaps = 10/192 (5%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL-GSRERELVLFYCNLIDSFCKHDSK 165
FQ N +I L K GQ + A LE L ++ G R V+ Y +ID CK
Sbjct: 170 FQLNQVSYRTLINGLCKVGQTKAA----LEMLRRIDGKLVRLDVVMYNTIIDGVCK---D 222
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ +D + +++V + + ++I GLC MGQ +A L+ +M ++ + P+ +
Sbjct: 223 KLVNDAFDFYSEMV--AKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVY 280
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ ++ + + G +++ + + M + + V N +++ Y NE+++ M
Sbjct: 281 TFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTM 340
Query: 286 KDSGIPFSVRTY 297
G+ V +Y
Sbjct: 341 AQIGVAPDVHSY 352
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D+FCK + + + +V V S+++G C + + ++AE++
Sbjct: 285 LVDAFCKEGKVKEAKNVF-----VVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNT 339
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G+ P Y +I G+ ++ ++++ ++ +M D V N ++
Sbjct: 340 MAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGR 399
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S + + +M D G P ++ TYNS+L++
Sbjct: 400 ISYALKLIGEMHDRGQPPNIITYNSLLDA 428
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L ++I GLC G H+A + +++ G + + Y+ +I G ++G + ++ ++
Sbjct: 141 TLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRI 200
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS-TIMS 309
+ R+D V N ++ ++ + +M I +V TYN+++ C IM
Sbjct: 201 DGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLI--CGLCIMG 258
Query: 310 MLQD 313
L+D
Sbjct: 259 QLKD 262
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C +G+ +A + G PS Y +I + G + D E + M+++
Sbjct: 480 TMIDGYCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTE 539
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N ++ YG ++L+++ + +M+ +GI V TYN +++S
Sbjct: 540 GLHPDVVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHS 589
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G EA +I E+ +G PS + +I G + G ++ + M
Sbjct: 586 LIHSMVVRGYVDEANEIISELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLR 645
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ D V + +L Y + + ++ K+ D+G+ V YN++++ CS
Sbjct: 646 VKPDVVTCSALLHGYCRAQRMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSV 698
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 116 EIIAFLDKQGQREEAET--LILETLSKLGS--------REREL------VLFYCNLIDSF 159
E+ + +G + +A T +++ L KLG RE E V+ Y ++ SF
Sbjct: 332 ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSF 391
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK+ +DDT A L ++ S+ + + Q MI LC+ G+ EA LI+EMR +G
Sbjct: 392 CKNGM---WDDTRALLEEM--SAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG 446
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y IIY +E+ E + + +G + + N ++ + V
Sbjct: 447 CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAV 506
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNS 303
++M G V +YN ++ +
Sbjct: 507 RLAKEMILHGCSLDVVSYNGLIKA 530
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 69/153 (45%), Gaps = 9/153 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ C+ R D+ A L ++ + ++ ++I G G+ EA
Sbjct: 280 VMTYGFLLQGLCR---VRQADEARAMLGRVPELNVVLF------NTVIGGCLAEGKLAEA 330
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E M +KG +P Y +++G +LG + R++ +ME G + V +VL S
Sbjct: 331 TELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHS 390
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L++M G+ + + YN ++
Sbjct: 391 FCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMI 423
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 21/131 (16%)
Query: 134 ILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKR-GFDDTYARLNQL 178
+++ + K G+ +R LVL Y LI CK R + + LNQ
Sbjct: 527 LIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQG 586
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ Y ++I+GLC+MG H A NL+E++ + + P Y +I + ++
Sbjct: 587 LAPDIVTY------NTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVR 640
Query: 239 LLEDMERIVNQ 249
LL+D ++N+
Sbjct: 641 LLDDAAMLLNR 651
>gi|168045490|ref|XP_001775210.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673423|gb|EDQ59946.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 404
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 95/209 (45%), Gaps = 11/209 (5%)
Query: 98 YMRI--TEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL 155
YMR T++S Q N +I K G E+AE L+ + + + G + + Y L
Sbjct: 185 YMRDGNTDQS-VQPNSATYNTLINACGKGGLYEKAEELV-DLMVEHGVQPDHIT--YTAL 240
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
ID++ K ++T+ + ++V V A +MI G +AE + + M
Sbjct: 241 IDAYGKAGLWENAENTFKGM-----KGTNVSVDVMAYTAMIDAYGREGLYQKAEEMFKMM 295
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+ GL P+ Y ++ YG+ GL E+ + N M G + + + ++ +YG
Sbjct: 296 QHSGLRPNQVTYLSLMEAYGKAGLPEESRNVFNIMRESGYEGNVLIYSSLIDAYGKAGNY 355
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
L M+ +G ++ TY+++L+SC
Sbjct: 356 LEAARMLDMMRRAGCQPNLITYSAILSSC 384
>gi|147779268|emb|CAN70089.1| hypothetical protein VITISV_038171 [Vitis vinifera]
Length = 838
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 8/180 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
++G E+AE I E L + G V Y L++++ + G + ++ + +
Sbjct: 250 REGLCEKAEE-IFEQLQEAGLEPD--VYAYNALMEAYSRAGFPYGAAEIFSLMQHM---- 302
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
R + M+ G +A+ + E M+ G+ P+ + ++ Y R G +
Sbjct: 303 -GCEPDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 361
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E IVNQM G + DT N +L+ YG + +M L M+ P + TYN ++N
Sbjct: 362 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 421
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S G+ + E ++ +M G++P F ++ YGRLG E ME ++ ME
Sbjct: 349 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 408
Query: 255 TRVDTVCSNMVLSSYGDHNELSRM 278
D N++++ YG +RM
Sbjct: 409 YPADISTYNILINIYGRAGFFARM 432
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
GLCE +AE + E+++ GLEP + Y ++ Y R G I + M+ G
Sbjct: 252 GLCE-----KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 306
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D N+++ +YG + MK GI +++++ +L++ S
Sbjct: 307 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYS 354
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++ + + + TY L + + ++ C G +A
Sbjct: 98 VICYNLLIDAYGQKSLYKKAESTYLELLE-----ARCVPTEDTYALLLKAYCTSGLLEKA 152
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E + EMR G PS Y I G + G + I +M+ D + T M+++
Sbjct: 153 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 212
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
YG ++ + +M+ ++ T+ +++N+
Sbjct: 213 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 247
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID+ CK ++ + +++ S S+V ++I GLC+ + +A L
Sbjct: 480 YNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAV-----TFNTLIDGLCKAKRIDDATEL 534
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
IE+M +GL+P+ Y I+ Y + G ++ I+ M ++G +D V +++
Sbjct: 535 IEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCK 594
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L+ M+ GI + + YN V+ S
Sbjct: 595 AGRTQVALKLLRGMRIKGIRPTPKAYNPVIQS 626
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC++G PH L EEM+ G P Y +I +G L + ++N+MES+G
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
TV N ++ + + +M GI S T+N++++
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDG 521
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +I+ K+ D+ +NQ+V+ ++I L + EA
Sbjct: 337 VFTYNTVINCLSKNGE---LDEAKGIVNQMVDRG--CLPDTTTFNTLIVALSSQNRLEEA 391
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L E+ VKGL P + + +I ++G R+ +M+S G D V N+++
Sbjct: 392 LDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDH 451
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + L +M+ +G P S TYN+++++
Sbjct: 452 LCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDA 486
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK +D + Q + + + + + GLC+ G A +++
Sbjct: 273 LINGYCKMGR---VEDALGYIQQEI--ADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDL 327
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P F Y +I + G L++ + IVNQM G DT N ++ + N
Sbjct: 328 MLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNR 387
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ V T+N ++N+
Sbjct: 388 LEEALDLARELTVKGLSPDVYTFNILINA 416
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 52/125 (41%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SS V +++ G E G A + +M G P+G +I GY ++G +
Sbjct: 224 SSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRV 283
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
ED + Q +DG D V N + + +S + + M G V TYN+V
Sbjct: 284 EDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTV 343
Query: 301 LNSCS 305
+N S
Sbjct: 344 INCLS 348
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 90/225 (40%), Gaps = 22/225 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
+I L Q + EEA L E K S + V + LI++ CK H R F++
Sbjct: 378 LIVALSSQNRLEEALDLARELTVKGLSPD---VYTFNILINALCKVGDPHLGIRLFEEM- 433
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
SS +I LC MG+ A +L+ EM G S Y II
Sbjct: 434 --------KSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIID 485
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+ +E+ E + +QM++ G V N ++ + +++M G+
Sbjct: 486 ALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQP 545
Query: 293 SVRTYNSVL------NSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
+ TYNS+L + +L+ + +N F + ++ ++N
Sbjct: 546 NNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLIN 590
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 75/174 (43%), Gaps = 7/174 (4%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192
L+LE +S G E + L+ F + S A++ + S + V V
Sbjct: 218 LMLEEMSSHGVAPDETT--FTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVN---- 271
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+I+G C+MG+ +A I++ G EP Y ++G + G + ++++ M
Sbjct: 272 -VLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQ 330
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D N V++ + EL + +M D G T+N+++ + S+
Sbjct: 331 EGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSS 384
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 99/243 (40%), Gaps = 45/243 (18%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+ + EEAE + + ++ SR + + LID CK +KR DD +
Sbjct: 483 IIDALCKKMRIEEAEEVFDQMDAQGISRS---AVTFNTLIDGLCK--AKR-IDDATELIE 536
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q+V NS + Y K+ +K ++I+GLC+ G
Sbjct: 537 QMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAG 596
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A L+ MR+KG+ P+ Y +I R L D + +M G D +
Sbjct: 597 RTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYK 656
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323
+V S L R +++ D + + + +S + L +L +D+ +S
Sbjct: 657 IVFRS------LCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYLISA 710
Query: 324 LEL 326
+EL
Sbjct: 711 IEL 713
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 15/145 (10%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS+VY + ++ L G E L+ EMR +G + + + Y RL +
Sbjct: 88 SSAVY------EEIVQKLGTAGAFDLMEGLVREMRREGHQVRAVVVRSFVESYARLRRFD 141
Query: 242 D-MERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
D ++ ++NQ+++D G + DTV N +L+ + ++L + +M GI V T N
Sbjct: 142 DAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLN 201
Query: 299 SVLNS------CSTIMSMLQDLNSN 317
+++ + T + ML++++S+
Sbjct: 202 TLIKALCRAHQVRTAVLMLEEMSSH 226
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++I LC Q A ++EEM G+ P + ++ G+ G +E R+ +M
Sbjct: 200 LNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMM 259
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G V N++++ Y + + ++Q+ G TYN+ ++
Sbjct: 260 EAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHG 311
>gi|224057531|ref|XP_002299253.1| predicted protein [Populus trichocarpa]
gi|222846511|gb|EEE84058.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 59/117 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMISG C +G+ EA L E M+++GLEP+ F + +I GY R G + ++++M +
Sbjct: 197 SMISGYCNVGKIEEALVLFERMKLEGLEPNDFTWNALISGYARRGDSDGAFSLLSKMTRE 256
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G D V N +++ + Q M G+ ++ T +L +C + S+
Sbjct: 257 GLVPDLVTWNAMIAGFVQGERAGDAFKLFQDMLVLGVKPNLVTVAGLLPACGMVSSI 313
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS C G+ EA N++E M+ KGL P + Y +I + + G L+ + +M SDG
Sbjct: 312 LISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDG 371
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN---SVLNSCSTIMSML 311
D V N +L++ + +K+ + G P +VR YN S L SC + L
Sbjct: 372 CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKAL 431
Query: 312 Q 312
+
Sbjct: 432 E 432
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G+C+ G A + + + +G P Y ++ + ED ER++ M
Sbjct: 241 AIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLS 300
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V ++++SS+ + V L+ MK+ G+ +Y+ ++++
Sbjct: 301 GCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISA 350
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI K R + + ++Q + +A +++ GLC+ G+ +A +
Sbjct: 563 YSILIHGLTKAGQARETSNIFQAMSQ-----QGFALDARAYNAVVDGLCKSGKVDKAYEV 617
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EEM+VK + P+ Y I+ G ++ L++ + + +S G ++ + + ++ +G
Sbjct: 618 LEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L L++M G+ +V T+NS++++
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDA 709
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 91/204 (44%), Gaps = 9/204 (4%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R ++ ++ + L ++ L ++GQ E A L+ E K E ++VL Y ID
Sbjct: 199 LRQMQDVGYEVSVPLFTTLVRALAREGQMEPALALVDEV--KGSCLEPDIVL-YNVCIDC 255
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
F K S D + ++L + + + SM+ LC+ G+ EAE L +M +
Sbjct: 256 FGKAGS---VDMAWKFFHEL--KAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAE 310
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
P + Y +I GYG +D +++ ++ G V N +L+ G ++
Sbjct: 311 RDVPCAYAYNTMIMGYGSAERFDDAYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDEA 370
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLN 302
+ MK P ++ TYN +++
Sbjct: 371 LTLFDVMKKDAKP-NISTYNIIID 393
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K GQ E I + +S+ G Y ++D CK D Y L
Sbjct: 566 LIHGLTKAGQARETSN-IFQAMSQQGFALDARA--YNAVVDGLCKSGK---VDKAYEVLE 619
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ V+ S++ GL ++ + EA L EE + KG+E + Y +I G+G+
Sbjct: 620 EM--KVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNVILYSSLIDGFGK 677
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G +++ I+ +M G + N ++ + E+ ++ Q MK+ + T
Sbjct: 678 VGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYT 737
Query: 297 YNSVLNS 303
Y+ ++N
Sbjct: 738 YSILING 744
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 84/220 (38%), Gaps = 39/220 (17%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K Q EEA I E+ S+ G + YC+LID K K DD Y ++++
Sbjct: 430 LCKANQLEEAHR-IFESASERGCNPNSVT--YCSLIDGLGK---KGKIDDAYRLFEKMLD 483
Query: 181 SSSS------------------------VY---VKRQA------LKSMISGLCEMGQPHE 207
+ +Y ++R L + + + + G+ +
Sbjct: 484 AGHDANPIIYTSLIRNFFMHGRKEDGHKIYKEMIRRGGRPDLTLLNTYMDCVFKAGEVEK 543
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
+ E+M+ G P Y +I+G + G + I M G +D N V+
Sbjct: 544 GRAIFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVD 603
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++ + L++MK + +V TY S+++ + I
Sbjct: 604 GLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKI 643
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 90/196 (45%), Gaps = 8/196 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
+ N L + +I K G+ +EA LILE + K G V + +L+D+ K +
Sbjct: 662 ELNVILYSSLIDGFGKVGRIDEA-YLILEEMMKKGLTPN--VYTWNSLMDALVKTEEIDE 718
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ + ++ S + Y +I+GLC + + ++A +EM+ +GL P+ Y
Sbjct: 719 ALICFQSMKEM-KCSPNTYT----YSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTY 773
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G ++G + D + + +++G D+ N ++ + N ++ +
Sbjct: 774 TTMISGLAKVGNITDAYSLFERFKTNGGIPDSASFNALIEGMSNANRPMEAYQVFEETRL 833
Query: 288 SGIPFSVRTYNSVLNS 303
G +V+T S+L++
Sbjct: 834 RGCRLNVKTCISLLDA 849
>gi|15224671|ref|NP_180698.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
gi|75206083|sp|Q9SIC9.1|PP178_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At2g31400, chloroplastic; Flags: Precursor
gi|4589961|gb|AAD26479.1| unknown protein [Arabidopsis thaliana]
gi|330253448|gb|AEC08542.1| genomes uncoupled 1 protein [Arabidopsis thaliana]
Length = 918
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 81/374 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL--VLFYCNLIDSFCKHDSKRGFDDTYAR 174
++ KQG+ +E + + E RE L +L Y LID + SK G Y
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEM-----KREHVLPNLLTYSTLIDGY----SKGGL---YKE 532
Query: 175 LNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ S ++ + ++I LC+ G A +LI+EM +G+ P+ Y II
Sbjct: 533 AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 233 GYGRLGLLEDMERIVNQ-------------MESDGTRVDTVCSNMVLSSYG--------D 271
+GR ++ N E++G RV + + S
Sbjct: 593 AFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEG 652
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSILE 325
ELS ++ +KM I +V T++++LN+CS S +L++L D + +
Sbjct: 653 MQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVV 712
Query: 326 LTEVLNEEE---------VSVVKELEDS--SVLDEA---MKWDSGETK------------ 359
++ + E V E++ S S A M W G+ +
Sbjct: 713 HGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSR 772
Query: 360 -----------LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTV 408
LDLH M G+A ++ W+ +R+ E H +P ++++ G GKHS V
Sbjct: 773 QVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWGKHSKV 831
Query: 409 RGESSVKAMVKKMM 422
G+ +++ V+ ++
Sbjct: 832 VGDGALRRAVEVLL 845
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+SV +K+ + +++ G + G+ E + + EM+ + + P+ Y +I GY + GL
Sbjct: 471 ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLY 530
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++ I + +S G R D V + ++ + + + V + +M GI +V TYNS+
Sbjct: 531 KEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590
Query: 301 LNSC--STIMSMLQDL-NSNDFPLSILELTEVLNEEEVSVVK 339
+++ S M D N P S L+ + E V++
Sbjct: 591 IDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQ 632
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G E A L E ++ R + V Y L+D+ CK D + L
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNR---RIEQDVFSYNTLLDAICKGGQ---MDLAFEILA 398
Query: 177 QLVNSSSSVYVKR-----QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
Q+ VKR + ++I G + G+ EA NL EMR G+ Y ++
Sbjct: 399 QMP-------VKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLL 451
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
Y ++G E+ I+ +M S G + D V N +L YG + + +MK +
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511
Query: 292 FSVRTYNSVLNSCS 305
++ TY+++++ S
Sbjct: 512 PNLLTYSTLIDGYS 525
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L G+ A+ + E G + + + +I YGR GL E+ + N M+
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G R + V N V+ + G E ++ + +M+ +G+ T+NS+L CS
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCS 350
>gi|168036199|ref|XP_001770595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678116|gb|EDQ64578.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 35/187 (18%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ L+NS Y K+Q ++M E + EM+ G S Y C++ Y
Sbjct: 573 FSTLINS----YGKKQDFRNM-------------EATLWEMQNAGHGGSLEAYNCVLDAY 615
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
G+ G L+ +E ++ +ME G ++D N++++ YG H +++ M KM++ G
Sbjct: 616 GKAGHLDKLEDVIARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDR 675
Query: 295 RTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEE--------VSVVKELEDSSV 346
TYN +M++ D+P ++ +++ + V +V E +
Sbjct: 676 WTYN----------TMIRTYGYADYPDKAVDTFKMMQDSGIMPDRVTYVMLVAAFEKAGN 725
Query: 347 LDEAMKW 353
L EA +W
Sbjct: 726 LLEAARW 732
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MI+ G +AE ++E+M + P + + YG+ G +E+ E I++ M
Sbjct: 117 AYSAMIAIYTRCGFFEKAEKIMEDMWNHKIAPDRDNWLKQMNTYGQQGKIEEAEHIMDTM 176
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
E G + V N ++++YG + + +KMK++G+ TY+ ++ +C
Sbjct: 177 ERLGMHLGVVGYNSMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACG 231
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+ + G +A L E+M+ GLEP Y C+I GR G L D M+
Sbjct: 190 SMITAYGKAGLYEKALRLFEKMKEAGLEPDEVTYSCMIGACGRAGKLRDALDYFQAMKRL 249
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N ++S YG + +V L MK+ G +T ++V+ +
Sbjct: 250 GIMPASSNFNTLISLYGKARNVVGIVRVLADMKNFGCTPDSQTLDAVVRA 299
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ LI+S+ K K+ F + A L ++ N+ + +A ++ + G + E++
Sbjct: 573 FSTLINSYGK---KQDFRNMEATLWEMQNAGHGGSL--EAYNCVLDAYGKAGHLDKLEDV 627
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I M GL+ Y +I YGR + +ME + ++M+ +G D N ++ +YG
Sbjct: 628 IARMEKSGLQMDLASYNILINIYGRHTKIAEMEALFHKMQEEGFIPDRWTYNTMIRTYGY 687
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + V + M+DSGI TY
Sbjct: 688 ADYPDKAVDTFKMMQDSGIMPDRVTY 713
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E + +EM G P+ + +I YG+ G+L D R +++ D + + ++
Sbjct: 519 EVHKIFQEMIDVGCIPNTITFNVMIDLYGKSGML-DRARDASKLAQQLGVADKITFSTLI 577
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+SYG + M L +M+++G S+ YN VL++
Sbjct: 578 NSYGKKQDFRNMEATLWEMQNAGHGGSLEAYNCVLDA 614
>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 545
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/255 (20%), Positives = 114/255 (44%), Gaps = 40/255 (15%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ EA+ ++ + K + V+ Y +L+D +C L + VN +
Sbjct: 280 KEGKVREAKNVLAVMMKK---NVKLDVVTYNSLMDGYC--------------LVKQVNKA 322
Query: 183 SSVY-VKRQ--------ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
S++ V Q + MI+G C++ EA L EEM K + P+ Y ++ G
Sbjct: 323 KSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDG 382
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ G +V++M G + + N +L + +N + + ++ L K+K+ GI
Sbjct: 383 LCKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPD 442
Query: 294 VRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVK 339
+ TY ++N + + +DL + +I T ++N +E ++++
Sbjct: 443 IFTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLS 502
Query: 340 ELEDSSVLDEAMKWD 354
+++D+ + A+ ++
Sbjct: 503 KMKDNGCIPNAITYE 517
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 89/201 (44%), Gaps = 8/201 (3%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
FQ + +I L + G+ + A L+ KL R V+ Y +IDS CK +
Sbjct: 159 FQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKL---VRPNVVMYSTIIDSMCKD---K 212
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+D + ++V+ S V + S+ISG C +G+ A +L M + P+ +
Sbjct: 213 LVNDAFDLYCEMVSKRISPDVVTYS--SLISGFCVVGKLKYAVDLFNRMISDNINPNVYT 270
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ +I G+ + G + + + ++ M ++D V N ++ Y ++++ M
Sbjct: 271 FSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMA 330
Query: 287 DSGIPFSVRTYNSVLNSCSTI 307
G+ V +Y+ ++N I
Sbjct: 331 QRGVTPDVWSYSIMINGFCKI 351
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 55/96 (57%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC++G+ +A+ + E++ VKG P+ + Y +I G+ G ++ ++++M+ +G
Sbjct: 449 LINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNG 508
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ + +++ S + +E + L++M G+
Sbjct: 509 CIPNAITYEILIHSLFEKDENDKAEKLLREMIARGL 544
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ +C+ +A L+ +++ KG++P F Y +I G ++G L+D +++ +
Sbjct: 413 SILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFEDLLVK 472
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + +++ + + + L KMKD+G + TY +++S
Sbjct: 473 GYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHS 522
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 95/240 (39%), Gaps = 43/240 (17%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R + + N + + II + K +A L E +SK S + V+ Y +LI
Sbjct: 186 LRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPD---VVTYSSLISG 242
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
FC + D + R+ N + +VY +I G C+ G+ EA+N++ M K
Sbjct: 243 FCVVGKLKYAVDLFNRMIS-DNINPNVY----TFSILIDGFCKEGKVREAKNVLAVMMKK 297
Query: 219 -----------------------------------GLEPSGFEYKCIIYGYGRLGLLEDM 243
G+ P + Y +I G+ ++ ++++
Sbjct: 298 NVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGFCKIKMVDEA 357
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +M + V N ++ S + + +M D G P ++ TYNS+L++
Sbjct: 358 MKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNIITYNSILDA 417
>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Brachypodium distachyon]
Length = 524
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I+G C G+ ++ EMR + G+ P + Y +I G+ ++G +ED ++ ++M +
Sbjct: 152 TVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLT 211
Query: 253 DG-TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+G + V N ++ Y D L + + +M D G+ +V TYN
Sbjct: 212 EGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYN 258
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 82/195 (42%), Gaps = 13/195 (6%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A +I+ K G+ E+A + E L++ G E V+ Y LI +C + +
Sbjct: 187 ATVISGWCKVGKVEDATKVFDEMLTE-GKVEPNAVM-YNALIGGYCDQGN---LEVALRY 241
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++V+ S+ V L + L G+ EA L+EEM KGL P F Y +I GY
Sbjct: 242 RGEMVDRGVSMTVATYNL--FVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGY 299
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIP 291
+ G + ++ M G R V + LS G E R+ GI
Sbjct: 300 CKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRL---FNDAVRRGIR 356
Query: 292 FSVRTYNSVLNSCST 306
+ YN+++NS T
Sbjct: 357 PDLFMYNALINSHCT 371
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+ C G A ++ EM K + P Y ++ G LG L++ ++ +M
Sbjct: 364 ALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKR 423
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V N ++S Y ++ V +M G ++ TYN+++
Sbjct: 424 GIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIKG 473
>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
Length = 438
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 61/110 (55%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+S+++ LC+ G+ EA + + M +GLEP Y+ ++ GY G L +M +++ M
Sbjct: 313 RSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 372
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+G + D N+++ +Y ++ + +L KM+ G+ +V Y +V++
Sbjct: 373 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVID 422
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G + G +A + EM + + P+ Y II + ++ ++N M +
Sbjct: 209 TVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKN 268
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D + N +L Y + + L+KM+ G+ +V TY S++N
Sbjct: 269 GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMN 317
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 33/165 (20%), Positives = 72/165 (43%), Gaps = 7/165 (4%)
Query: 149 VLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +I+ F K DS + + + L++ ++ + Y S+I+ LC+ +
Sbjct: 204 VVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY------SSIIAALCKAQAMDK 257
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ M G+ P Y I++GY G ++ + +M SDG + V +++
Sbjct: 258 AMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMN 317
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 318 YLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K + + L + SSS+ + MI L + G+ +A N+
Sbjct: 411 YCSLIDALGKAKRYDLACELFQELKENCGSSSA-----RVYAVMIKHLGKAGRLDDAINM 465
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P + Y ++ G R G+L++ + +M+ G D N++L+
Sbjct: 466 FDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLAK 525
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK S + V +YN+VL + S +++++N+ F ++
Sbjct: 526 TGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEMNTLGFEYDLIT 585
Query: 326 LTEVL 330
+ +L
Sbjct: 586 YSSIL 590
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +GQ E+ L E +S G + V Y LI +FCK + D LN
Sbjct: 167 MIIMLMHEGQYEKVHQLYNE-MSTEGHCFPDTVT-YSALISAFCKLGRR---DSAIQLLN 221
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ + ++ +Y +I+ + H A +L EEMR + P F Y +I
Sbjct: 222 EMKEIGMQPTTKIYTM------LIALFFKFNDAHGALSLFEEMRHQYCRPDVFTYTELIR 275
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G+ G +++ +M+ +G R DTV N +++ G L + Q+M+
Sbjct: 276 GLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLRCIP 335
Query: 293 SVRTYNSVLNS 303
SV TYN+++ +
Sbjct: 336 SVVTYNTIIKA 346
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 81/208 (38%), Gaps = 14/208 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + + A L E GS + Y +I KH
Sbjct: 400 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV---YAVMI----KH 452
Query: 163 DSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
K G DD +++ + + VY A +++SGL G EA + + M+ G
Sbjct: 453 LGKAGRLDDAINMFDEMNKLGCAPDVY----AYNALMSGLARTGMLDEALSTMRRMQEHG 508
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y I+ G + G +++ M+ R D V N VL +
Sbjct: 509 CIPDINSYNIILNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAS 568
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++M G + + TY+S+L + +
Sbjct: 569 KLMKEMNTLGFEYDLITYSSILEAIGKV 596
>gi|413941674|gb|AFW74323.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 876
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVK-------RQAL-----------KSMISGLCEMGQPH 206
+RGF AR + NS ++YVK R A SMI G C +
Sbjct: 193 RRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAFDMMGQRDLCTWNSMIFGCCRSNEWE 252
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L+++MR +G EP + ++ Y R G L+ ++ QME G D V ++
Sbjct: 253 EARRLLDDMRRQGTEPGLVTWNTLVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLV 312
Query: 267 SSYGDHNELSRMVLW-LQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
S + H + LW +M+ +G+ + T S +++C+++ + Q + + + +
Sbjct: 313 SGF-VHGDRGGEALWCFARMRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGS 371
Query: 326 LTEVLN 331
+ VL+
Sbjct: 372 VNNVLS 377
>gi|242060055|ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
gi|241931148|gb|EES04293.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
Length = 574
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 64/118 (54%), Gaps = 2/118 (1%)
Query: 175 LNQLVNSSSSVY-VK-RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+N++VN +V+ VK ++ L + L G+ EA +++ MR +G +P Y ++Y
Sbjct: 300 VNRVVNKFEAVWGVKTKELLDGVHRALTSNGKFDEAAEIVQTMRDQGHQPDNVTYSQLVY 359
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + G LED +++++ME++G D +++ Y ++ R V + +M + G+
Sbjct: 360 GLCKAGKLEDARKVLDEMEAEGCVPDLKTWTLLIQGYCSAGDVDRAVQYFTEMIEKGL 417
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 9/188 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L +GQ E+ L E +S G + + V Y LI +FCK G D+ RL
Sbjct: 200 MIIMLIHEGQYEKVHELYNE-MSNEGHCQPDTVT-YSALISAFCK----LGRQDSAIRLL 253
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N++ + K + +IS ++ H A +L EEMR P F Y +I G G
Sbjct: 254 NEMKENGMQPTAKIYTM--IISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLG 311
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G +++ ++M+ +G + DTV N +++ G L + ++M S +V
Sbjct: 312 KAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVV 371
Query: 296 TYNSVLNS 303
TYN+++ +
Sbjct: 372 TYNTIIKA 379
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K + + L + SSS+ + MI L + G+ +A NL
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSA-----RVYAVMIKHLGKAGRLDDAINL 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P+ + Y ++ G R +L++ + +M+ G D N++L+
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK+S I +YN+VL++ S +++++N+ F ++
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLIT 618
Query: 326 LTEVL 330
+ +L
Sbjct: 619 YSSIL 623
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 14/208 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + + A L E GS + Y +I KH
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV---YAVMI----KH 485
Query: 163 DSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
K G DD +++ + + +VY A +++SGL EA + +M+ G
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVY----AYNALMSGLARACMLDEALTTMRKMQEHG 541
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y I+ G + G ++ M++ + D V N VLS+
Sbjct: 542 CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++M G + + TY+S+L + +
Sbjct: 602 ELMKEMNALGFEYDLITYSSILEAIGKV 629
>gi|357140125|ref|XP_003571621.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Brachypodium distachyon]
Length = 814
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 70/146 (47%), Gaps = 7/146 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L+T+ +G + + YC+L+ C D+ Q + +S+ V
Sbjct: 639 VLDTMESIGIQPTNVT--YCSLMHWMCHAGL---VDEAKTMFEQ--SRKNSIEVGVVGYT 691
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
MI GLC++G+ EA N EEMR + + P+ Y ++Y Y + G E+ ++ ++M S
Sbjct: 692 IMIQGLCKIGKMDEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSS 751
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMV 279
G D V N +++ + + L + +
Sbjct: 752 GIVPDNVSYNTLVTGFSQVDSLDKAI 777
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI C+ + +G + L +VN + + MI G C+ + EA L ++
Sbjct: 483 LIHGLCEGKNMKGATEV---LRTMVNKG--MELDNITYNIMIQGCCKDSKIEEALKLRDD 537
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M KG +P + + II+ Y LG +E+ ++ QM+ +G + D V ++ Y +
Sbjct: 538 MIRKGFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDGYCKAKD 597
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +L ++ G+ + YN+++
Sbjct: 598 IQKANEYLNELMACGLKPNAVIYNALIGG 626
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLCE A ++ M KG+E Y +I G + +E+ ++ + M
Sbjct: 482 ALIHGLCEGKNMKGATEVLRTMVNKGMELDNITYNIMIQGCCKDSKIEEALKLRDDMIRK 541
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N ++ +Y D ++ + L +MK G+ V +Y ++++
Sbjct: 542 GFKPDAYMFNSIIHAYCDLGKMEEALHLLGQMKIEGVQPDVVSYGTIIDG 591
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 20/179 (11%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ +A + E+ GL+P+ Y +I GYGR G + +++ MES
Sbjct: 587 TIIDGYCKAKDIQKANEYLNELMACGLKPNAVIYNALIGGYGRNGNISGAIGVLDTMESI 646
Query: 254 GTRVDTV--CSNMV-LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI--- 307
G + V CS M + G +E M ++ + + I V Y ++ I
Sbjct: 647 GIQPTNVTYCSLMHWMCHAGLVDEAKTM---FEQSRKNSIEVGVVGYTIMIQGLCKIGKM 703
Query: 308 ---MSMLQDLNSNDFPLSILELTEVL--------NEEEVSVVKELEDSSVLDEAMKWDS 355
M+ +++ S P + + T ++ NEE + E+ S ++ + + +++
Sbjct: 704 DEAMNYFEEMRSRSIPPNKITYTTLMYAYCKSGNNEEASKLFDEMVSSGIVPDNVSYNT 762
>gi|357125122|ref|XP_003564244.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48730,
chloroplastic-like [Brachypodium distachyon]
Length = 502
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 101/221 (45%), Gaps = 11/221 (4%)
Query: 87 HPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG 142
H R+++L A ++ + ++ W++ + ++I L K Q +A L + +
Sbjct: 123 HERIAALRWESALKVFELMRDQVWYRPYVGIYIKLITMLGKCKQPGKAHELFQAMVDEGC 182
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
+ E Y L+ ++ + S FD ++ L+++ ++ Q +I
Sbjct: 183 APNLE---SYTALVSAYSRSGS---FDRAFSLLDRM-KATPGCRPDVQTYSILIKSCLHA 235
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
+ ++L+ +M G+ P+ Y ++ YG+ G +ME + +M S+ + D
Sbjct: 236 YDFDKVKDLLADMACGGIRPNTVTYNTLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTM 295
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N L ++G ++ M +K + SGI +++TYN +L+S
Sbjct: 296 NSTLRAFGSSGQIEMMESCYEKFQASGISPNIKTYNILLDS 336
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ + G+ E E+ + EM + +P + + +G G +E ME + ++
Sbjct: 262 TLVDAYGKAGRFAEMESTLLEMLSEKCKPDVWTMNSTLRAFGSSGQIEMMESCYEKFQAS 321
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N++L SYG +M ++ M+ +++ TYN V+++
Sbjct: 322 GISPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 371
>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
Length = 693
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C +G+ +A + G PS +I R G + D E + M+++
Sbjct: 413 TMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTE 472
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G ++D V N ++ YG ++L+++ + +M+ +GI V TYN +++S
Sbjct: 473 GLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHS 522
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G EA +I E+ +G PS + +I G+ + G ++ + M
Sbjct: 519 LIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLR 578
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ D V + +L Y + + ++ K+ D+G+ V YN++++ CS
Sbjct: 579 MKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSV 631
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A +LE + K G L Y L+ +FCK ++ D A L+
Sbjct: 103 LISFLCRKGLVEPALE-VLEQIPKYGCTPNSLS--YNPLLHAFCK---QKKMDKAMAFLD 156
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S Y + ++++ LC G+ A L+ +++ KG P Y +I G +
Sbjct: 157 LMV--SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 214
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ ++N+M S G + D + + + + + + + K++D GI +
Sbjct: 215 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 274
Query: 297 YNSVL 301
YN+++
Sbjct: 275 YNAII 279
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E ++ Q+ G
Sbjct: 68 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 127
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ + + +L M G + +YN++L +
Sbjct: 128 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 176
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A ++E++ G P+ Y +++ + + ++ ++ M S G
Sbjct: 103 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 162
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 163 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 211
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 23/200 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKH---DSKRGFDDTY-----A 173
+ G+ EAE L LE +S+ G L CN+I D C++ D G D
Sbjct: 433 RAGRTTEAERL-LERMSEKGY---SLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGST 488
Query: 174 RLNQLVNSSSSVY----------VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
L +L NS SV R +IS LC+ G+ EA+ + EM VK + P
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDRITYSILISALCKEGRFDEAKKKLLEMIVKDISPD 548
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I+GY + G +++ ME G T N+++ + + ++ ++ +
Sbjct: 549 SVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMS 608
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M++ G+ +V TYNS++ S
Sbjct: 609 EMEEKGVSPNVLTYNSLIKS 628
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 95/237 (40%), Gaps = 17/237 (7%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P F +L AL+ P T P+Y R+ + + LV + L G +
Sbjct: 94 PAFRSLRALASAPPPPT----------PVYNRLILTALRESRLDLVEALYKDLLLAGAQP 143
Query: 129 EAET--LILETLSKLGSRERELVLFYCNLI-DSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
+ T L+L L G E +F + + F RG+ ++ L
Sbjct: 144 DVFTRNLLLRALCDAGRMELAQRVFEAMPVRNEFSFGILARGYCRAGRSVDALKVLDGMP 203
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ ++++G C+ G EAE L+E MRV+GL P+ + I + G + D R
Sbjct: 204 SMNLVVCNTVVAGFCKEGLVEEAERLVERMRVQGLAPNVVTFNSRISALCKAGRVLDAYR 263
Query: 246 IVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
I M+ D R D V +++LS + D + + + M+ G V +YN
Sbjct: 264 IFKDMQEDWQHGLPRPDQVTFDVMLSGFCDAGFVDEARVLVDIMRCGGFLRRVESYN 320
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 51/112 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ C G A +++EM KG P+ F Y ++ R G + ER++ +M
Sbjct: 391 SLLHAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSLWRAGRTTEAERLLERMSEK 450
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G +DT N+++ +++L + + M + G R NS L+ S
Sbjct: 451 GYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVS 502
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 13/134 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLV----NSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI + CK FD+ +L +++ + S +Y + I G C+ G+
Sbjct: 517 YSILISALCKEGR---FDEAKKKLLEMIVKDISPDSVIY------DTFIHGYCKHGKTSL 567
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ +M KG PS Y +I G+ +++ +++++ME G + + N ++
Sbjct: 568 AIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIK 627
Query: 268 SYGDHNELSRMVLW 281
S+ L+R L+
Sbjct: 628 SFCQQGMLTRPCLF 641
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC+ G+ +A + +R + P Y +++ Y G + RI+++M G
Sbjct: 357 IVSGLCKEGKAFDARRVENFIRSGVMSPDVVTYTSLLHAYCSKGNIAAANRILDEMAQKG 416
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ N++L S G E R+ L++M + G N +++
Sbjct: 417 CAPNSFTYNVLLQSLWRAGRTTEAERL---LERMSEKGYSLDTAGCNIIIDG 465
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 110/246 (44%), Gaps = 22/246 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +E +T + + + K G + + Y +L+D +C + + Q
Sbjct: 307 KDGKMKEGKT-VFDMMMKQGIKPNFVT--YNSLMDGYCLVKEVNKAKSIFNTMAQ----- 358
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ MI+G C++ + EA NL +EM K + P Y +I G + G +
Sbjct: 359 GGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISY 418
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++V+QM G N +L + +++ + + L K+KD GI ++ TY+ ++
Sbjct: 419 ALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIK 478
Query: 303 S-CST------------IMSMLQDLNSNDFPLSILEL-TEVLNEEEVSVVKELEDSSVLD 348
C + ++ +LN + + + I E L E ++++ ++ED+ +
Sbjct: 479 GLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIP 538
Query: 349 EAMKWD 354
+A ++
Sbjct: 539 DAKTYE 544
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 11/215 (5%)
Query: 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV 149
L AF ++ +I + + + +I L +GQ ++A L + + LG ++
Sbjct: 135 LIPFAFSVFAKILKMGYVP-DTITFTTLIKGLCLKGQIQQA-FLFHDKVVALGFHFDQIS 192
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y LI CK R D R++ LV + +Y ++I +C++ +EA
Sbjct: 193 --YGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMY------NTIIDSMCKVKLVNEA 244
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L EM KG+ P Y +I G+ LG L D + N+M + + D N+++++
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ M GI + TYNS+++
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDG 339
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 55/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC++ Q +A L+ +++ KG++P+ + Y +I G + G LED ++ +
Sbjct: 440 SILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVK 499
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G ++ +++ + + + L KM+D+G +TY ++
Sbjct: 500 GHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIII 547
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 22/156 (14%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +++D+ CK D A L +L + +I GLC+ G+ +A +
Sbjct: 438 YNSILDALCKIHQ---VDKAIALLTKL--KDKGIQPNMYTYSILIKGLCQSGKLEDARKV 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-- 269
E + VKG + Y +I G+ GL + ++++ME +G D +++ S
Sbjct: 493 FEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFK 552
Query: 270 GDHNELS---------------RMVLWLQKMKDSGI 290
D N+++ ++ +W QK K+ +
Sbjct: 553 KDENDMAEKLLREMIARGVRPRQIAIWFQKKKEYDV 588
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLF--------------YCNLIDSFCKH 162
+I L K+G EEA+ ++E L + G + F + LI + CK
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCK- 313
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYV--KRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
SKR D L Q + S Y + M+ LC+ Q EA+ L+ EM GL
Sbjct: 314 -SKRLPDGVL--LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL 370
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P Y ++ G +LG L+ ++ +M +G D+ +L++ ++ +
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
L+ MK G + TYN++L+
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDG 453
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 144 RERELVLFYCN--------LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195
R + + FYC ++D+ CK + D+ +N++ N S V + ++
Sbjct: 326 RMKSMKEFYCPPNLETYNIMVDNLCK---AKQLDEAQELVNEMANYGLSPDVVTYS--AL 380
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ GLC++G+ A +L+EEM +G+ P F I+ + G ++ + M++ G+
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L + + +L KM + V +Y ++ +
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 84/187 (44%), Gaps = 11/187 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A I+ L K G+ + A + LET+ GS ++ Y L+D CK D+
Sbjct: 413 ASILNALSKAGKVDYALSH-LETMKARGSTPD--LVTYNTLLDGLCKAGR---IDEAITF 466
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L ++V + + V + +I+ LC GQ A + +EM +G+ P Y ++ G
Sbjct: 467 LAKMVAAKCTPDVFSYTI--IITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGL 524
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G LED+ + +++ + D V MV+ + +++M D+G P
Sbjct: 525 ARNG-LEDLA--LELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADA 581
Query: 295 RTYNSVL 301
TY +V+
Sbjct: 582 FTYINVV 588
>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 693
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C +G+ +A + G PS +I R G + D E + M+++
Sbjct: 413 TMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTE 472
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G ++D V N ++ YG ++L+++ + +M+ +GI V TYN +++S
Sbjct: 473 GLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHS 522
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G EA +I E+ +G PS + +I G+ + G ++ + M
Sbjct: 519 LIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLR 578
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ D V + +L Y + + ++ K+ D+G+ V YN++++ CS
Sbjct: 579 MKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSV 631
>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g19290-like [Cucumis
sativus]
Length = 885
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 78/157 (49%), Gaps = 19/157 (12%)
Query: 152 YCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
+C +ID+FCK +++ FD+ + ++ ++ VY MISG + +
Sbjct: 330 FCTIIDAFCKEGNVELARKYFDEIE---DMGLSQNTIVY------NIMISGYVKARDISQ 380
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EEMR K + P G + ++ G+ R G ED R++ + G D+ ++ ++
Sbjct: 381 ANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVA 440
Query: 268 SY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G ++E ++ L+ + + GIP SV +NS++
Sbjct: 441 GLCWAGRYDEAMKL---LENLLEKGIPPSVVAFNSII 474
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V+ A + I+GLC G +A ++ +M KG P+ F Y +I G+ ++G L +
Sbjct: 567 GVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEA 626
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V +M G D NM++ + + M G+ + TYN++++
Sbjct: 627 LKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 686
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C++G+ +EA L+ EM +GL P F II G + G ++ M
Sbjct: 612 SLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRM 671
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G D V N ++ Y ++ + KM DSG + TYN ++ T+
Sbjct: 672 GLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTV 725
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ A +M GL P Y +I GY + + + ++ +M G
Sbjct: 648 IICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSG 707
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQD 313
D N+ + Y +++R V+ L+++ GI + TYN+++N+ C+ I+
Sbjct: 708 WEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDHAMI 767
Query: 314 LNSNDFPLSILELTEVLN 331
L + ++ + T +N
Sbjct: 768 LTAKLLKMAFVPNTVTVN 785
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG- 254
++GLC G+ EA L+E + KG+ PS + II YG GL E M G
Sbjct: 439 VAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGL 498
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
T + CS++++S L + L M D G P + + +L+
Sbjct: 499 TPSSSTCSSLLISLV-RKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDG 546
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
K D+ + L +++ V A ++ G +G + AE+L EM+ +G+ P
Sbjct: 515 KGSLDEAWIALYDMIDKGFPV--TNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDA 572
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ I G GL+ D + + M G + N ++ + +L+ + +++
Sbjct: 573 VAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVRE 632
Query: 285 MKDSGIPFSVRTYNSVL 301
M G+ + T N ++
Sbjct: 633 MNKRGLLPDIFTVNMII 649
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C GQ A +L+ M G +PS + II + + G +E + +++E G
Sbjct: 298 VINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMG 357
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+T+ N+++S Y ++S+ L ++M+ I T+N+++
Sbjct: 358 LSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLV 404
>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 447
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 70/158 (44%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +ID CK D ++ +N + ++ ++I G C GQ
Sbjct: 202 RPDVVMYSTIIDGLCKDKIVNQAYDFFSEMN-----ARGIFPNVITYSTLIWGFCLAGQL 256
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A +L+ EM +K + P+ + Y +I + G +++ ++++ +M G D V N V
Sbjct: 257 MGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSV 316
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L L + KMK GI + TY ++++
Sbjct: 317 LDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDG 354
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID+ CK + A ++ + V S++ GLC+ +A
Sbjct: 275 VYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVV-----TYNSVLDGLCKSQNLDKA 329
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +M+ G++P+ + Y +I G + G L++ +++ + G +D N+++S
Sbjct: 330 TALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISG 389
Query: 269 YGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ + KM+D+G IP +V T++ ++ S
Sbjct: 390 LCKEGMFDKALAMKSKMEDNGCIPNAV-TFDIIIRS 424
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 79/174 (45%), Gaps = 8/174 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ +EA+ L+ E K + V+ Y +++D CK + D A
Sbjct: 281 LIDALCKEGKVKEAKKLLAEMHHKGQPAD---VVTYNSVLDGLCK---SQNLDKATALFM 334
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + + ++I GLC+ G+ A+ L + + VKG Y +I G +
Sbjct: 335 KM--KKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCK 392
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G+ + + ++ME +G + V ++++ S + +E + L M G+
Sbjct: 393 EGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKDENDKAEKLLHGMIAKGL 446
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 87/203 (42%), Gaps = 20/203 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLF--------------YCNLIDSFCKH 162
+I L K+G EEA+ ++E L + G + F + LI + CK
Sbjct: 255 VIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCK- 313
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYV--KRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
SKR D L Q + S Y + M+ LC+ Q EA+ L+ EM GL
Sbjct: 314 -SKRLPDGVL--LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGL 370
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P Y ++ G +LG L+ ++ +M +G D+ +L++ ++ +
Sbjct: 371 SPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALS 430
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
L+ MK G + TYN++L+
Sbjct: 431 HLETMKARGSTPDLVTYNTLLDG 453
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 85/189 (44%), Gaps = 11/189 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A I+ L K G+ + A + LET+ GS ++ Y L+D CK D+
Sbjct: 413 ASILNALSKAGKVDYALSH-LETMKARGSTPD--LVTYNTLLDGLCKAGR---IDEAITF 466
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L ++V + + V + +I+ LC GQ A + +EM +G+ P Y ++ G
Sbjct: 467 LAKMVAAKCTPDVFSYTI--IITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGL 524
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R G LED+ + +++ + D V MVL + +++M D+G P
Sbjct: 525 ARNG-LEDLA--LELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADA 581
Query: 295 RTYNSVLNS 303
TY SV++
Sbjct: 582 FTYISVVSG 590
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 144 RERELVLFYCN--------LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195
R + + FYC ++D+ CK + D+ +N++ N S V + ++
Sbjct: 326 RMKSMKEFYCPPNLETYNIMVDNLCK---AKQLDEAQELVNEMANYGLSPDVVTYS--AL 380
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ GLC++G+ A +L+EEM +G+ P F I+ + G ++ + M++ G+
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS 440
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L + + +L KM + V +Y ++ +
Sbjct: 441 TPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITA 488
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 5/149 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+ + CK D K D LNQL + S + ++I GL ++G+ A
Sbjct: 418 IVTYNTLLTALCK-DGK--VDAAVEILNQLSSKGCSPVL--ITYNTVIDGLTKVGKTEYA 472
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EEMR KGL+P Y ++ G GR G +++ +I + ME + V N ++
Sbjct: 473 VELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 532
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ SR + +L M + G + TY
Sbjct: 533 LCKAQQTSRAIDFLAYMVEKGCKPTEATY 561
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C +A L++EMR KG +P Y +I G + G L++ + +N M S G
Sbjct: 249 LIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYG 308
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + + N++L S L M G SV T+N ++N
Sbjct: 309 CKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILIN 356
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 116 EIIAFLDKQGQREEAETLILETL--------SKLGSREREL-----------VLFYCNLI 156
E + LD+Q QRE +I T+ S +G + L V+ Y LI
Sbjct: 226 EAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 285
Query: 157 DSFCKHDSKRGFDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+ CK D+ LN + +V L+SM C G+ +AE L+ +
Sbjct: 286 NGICKEGR---LDEAIKFLNNMPSYGCKPNVITHNIILRSM----CSTGRWMDAERLLSD 338
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M KG PS + +I R LL ++ +M G +++ N +L + +
Sbjct: 339 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKK 398
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ R + +L+ M G + TYN++L +
Sbjct: 399 MDRAIEYLEIMVSRGCYPDIVTYNTLLTA 427
>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
Length = 747
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 96/195 (49%), Gaps = 10/195 (5%)
Query: 111 PKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L++ +I L ++G+ +E + +L ++K G E+ Y LI +CK +
Sbjct: 273 PNLISYNVVINGLCREGRMKEI-SFVLTEMNKRGYSLDEVT--YNTLIKGYCKEGNFHQA 329
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+A + + S S + S+I +C+ G + A +++MRV+GL P+ Y
Sbjct: 330 LVMHAEMLRHGLSPSVI-----TYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYT 384
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ G+ + G + + R++ +M +G V N +++ + ++ + L+ MK+
Sbjct: 385 TLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEK 444
Query: 289 GIPFSVRTYNSVLNS 303
G+ V +Y++VL+
Sbjct: 445 GLTPDVVSYSTVLSG 459
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++ + + L+ M +KGLEP+ Y +I G R G ++++ ++ +M
Sbjct: 245 TLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKR 304
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V N ++ Y + ++ +M G+ SV TY S+++S
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHS 354
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y L+D F S++G+ ++ Y L +++++ S V ++I+G C G+ +A
Sbjct: 383 YTTLVDGF----SQKGYMNEAYRVLKEMIDNGFSPSV--VTYNALINGHCIAGKMVDAIA 436
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E+M+ KGL P Y ++ G+ R +++ R+ +M + G + DT+ + ++ +
Sbjct: 437 VLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFC 496
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M G+P TY +++N+
Sbjct: 497 EQRRTKEACDLFDEMLRVGLPPDEFTYTALINA 529
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 6/117 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G CE + EA +L +EM GL P F Y +I Y G L+ ++ N+M
Sbjct: 490 SLIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEK 549
Query: 254 GTRVDTVCSNMVLSSYGDH---NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G D V +++++ E R++L L + +P V TY++++ +CS I
Sbjct: 550 GVLPDVVTYSVLINGLNKQARTREAKRLLLKL--FYEESVPSDV-TYHTLIENCSNI 603
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 13/210 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK R DD + L + + + + +I+GLC G+ E
Sbjct: 240 VVTYNTLIDGYCK---LRKIDDGFELLRSM--ALKGLEPNLISYNVVINGLCREGRMKEI 294
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G Y +I GY + G + +M G + ++ S
Sbjct: 295 SFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHS 354
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM------LQDLNSNDFPLS 322
++R +L +M+ G+ + RTY ++++ S M L+++ N F S
Sbjct: 355 MCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPS 414
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAMK 352
++ ++N + ++ D+ + E MK
Sbjct: 415 VVTYNALINGH--CIAGKMVDAIAVLEDMK 442
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 46/96 (47%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AEN+ +EM + P+ F Y +I G+ G L+ R ++ME G + V N ++
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ L+ M G+ ++ +YN V+N
Sbjct: 249 GYCKLRKIDDGFELLRSMALKGLEPNLISYNVVING 284
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L+KQ + EA+ L+L+ LFY + S D TY +
Sbjct: 561 LINGLNKQARTREAKRLLLK-------------LFYEESVPS----------DVTY---H 594
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L+ + S++ K ++ S+I G C G EA+ + E M K +P G Y +I+G+ R
Sbjct: 595 TLIENCSNIEFK--SVVSLIKGFCMKGMMTEADQVFESMLEKNHKPDGTAYNVMIHGHCR 652
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMV 279
G + + +M G + TV ++ + G NEL+ ++
Sbjct: 653 GGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVI 698
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 45/107 (42%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G A + M KG P+ Y +I GY +L ++D ++ M G
Sbjct: 211 LIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKG 270
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + N+V++ + + L +M G TYN+++
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLI 317
>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 605
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 91/196 (46%), Gaps = 15/196 (7%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
R L+ + KLG + Y L+ C+ G +L+Q + + SS+
Sbjct: 180 HRISKAALLFTRMQKLGCTPNAIT--YGTLMKGLCR----TGNISIALKLHQEMLNDSSL 233
Query: 186 Y---VKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
Y K + +I LC+ + EA +L EEM+V+G+ P+ Y +I+G+ G
Sbjct: 234 YGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKW 293
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E+ +R+ N+M + G + + V N+++ ++ L+ M GI ++ TYNS+
Sbjct: 294 EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSL 353
Query: 301 LNSCSTIMSMLQDLNS 316
+ ++ DLNS
Sbjct: 354 IEG----FCLVGDLNS 365
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 97/219 (44%), Gaps = 21/219 (9%)
Query: 92 SLAFPLYMRITEES---WFQWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRER 146
S+A L+ + +S + P +++ II L K + +EA L E + G
Sbjct: 218 SIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDL-FEEMKVQGMTPT 276
Query: 147 ELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
V+ Y +LI FC ++KR F N++VN V +I LC+
Sbjct: 277 --VISYTSLIHGFCCGGKWEEAKRLF-------NEMVNQG--VQPNVVTFNVLIDVLCKE 325
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA++L+E M +G+ P+ Y +I G+ +G L + M S G D +C
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++++ Y +++ + M G V+TY ++L
Sbjct: 386 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 424
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/104 (22%), Positives = 49/104 (47%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S ++ + + +I GLC+ G+ A L E++ + L+P Y +I+ + R G +
Sbjct: 480 SYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVV 539
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +ME +G D + ++ + + +L ++V L M
Sbjct: 540 KANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLHMM 583
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 5/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ +CK ++ N ++ VK ++++GL + G+ +A
Sbjct: 382 VICYTVLINGYCKTSK---VEEAMKLYNGMLQVGKRPDVKTYG--ALLTGLFQGGKVGDA 436
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L M+V G+ + Y + G + G L + + N+++S ++D C N ++
Sbjct: 437 KKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDG 496
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+L +K+ + V TYN +++
Sbjct: 497 LCKAGKLETAWELFEKLPQEELQPDVVTYNIMIH 530
>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 636
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/318 (18%), Positives = 143/318 (44%), Gaps = 35/318 (11%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A L S+ +A SP + +AL + L + ++ ++ +N +
Sbjct: 227 AYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVD 286
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---KHDSKRGFDDT 171
A L K+G + A+ +++ + K G V+ Y +L+D +C + + + +T
Sbjct: 287 A-----LCKEGNLKGAKNMLV-VMMKEGVMPN--VVTYSSLMDGYCLVNQVNKAKHVLNT 338
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+++ N+ S +MI+G C++ EA +L +M+ KG+ P Y +I
Sbjct: 339 ISQMGAAPNAHSYC--------TMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLI 390
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G + G + +V++M +G + N ++ + ++ + + + ++K+KD GI
Sbjct: 391 DGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQ 450
Query: 292 FSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLN--------EEEVSV 337
+ T+N ++ + + QDL S + ++ ++N +E ++
Sbjct: 451 PDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEAL 510
Query: 338 VKELEDSSVLDEAMKWDS 355
+ +++D+ ++ +A+ +++
Sbjct: 511 LSKMDDNGIIPDAVTYET 528
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 135 LETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
L+ L K+ + ++ V+ Y +IDS CKH + D Y +Q++ S V
Sbjct: 193 LQMLRKIDGKLVKINVVMYNTIIDSLCKH---KLVIDAYELYSQMIAKKISPDV--VTFS 247
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C +GQ EA L EM +K + P + + ++ + G L+ + ++ M +
Sbjct: 248 ALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKE 307
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G + V + ++ Y N++++ L + G + +Y +++N I
Sbjct: 308 GVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKI 361
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 83/205 (40%), Gaps = 42/205 (20%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L T+S++G+ YC +I+ FCK + D+ + N + + +
Sbjct: 335 VLNTISQMGAAPNAHS--YCTMINGFCK---IKMVDEALSLFNDM--QFKGIAPDKVTYN 387
Query: 194 SMISGLCEMGQPHEAENLIEEM-----------------------------------RVK 218
S+I GLC+ G+ A L++EM + +
Sbjct: 388 SLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQ 447
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G++P + + +IYG ++G L++ + + + S G V+ N++++
Sbjct: 448 GIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEA 507
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
L KM D+GI TY +++ +
Sbjct: 508 EALLSKMDDNGIIPDAVTYETLIQA 532
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 5/148 (3%)
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
I+ C+ D ++ Y ++ +S + S+IS LC+ G EA L++ M
Sbjct: 536 INGLCRLDC---VNEAYQAFAEM--TSRGIVPNNITYNSIISALCKAGNMTEALKLVQNM 590
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
R GL P + +I G R G L+ ++ ++ M S+G DTV N ++++Y ++
Sbjct: 591 RQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDM 650
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++ KM +G + TYN ++S
Sbjct: 651 NSAMNFMNKMLVAGCEPDIFTYNIWMHS 678
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 34/228 (14%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLG-----SRERELVLFYCN--------------LID 157
+IA K+G EEA L ++KLG S L++ CN +
Sbjct: 431 LIAAYSKEGLHEEASELY-RIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVSK 489
Query: 158 SFCKHDSKRGFDDTYARLNQLVNS--------SSSVYVKRQALKSMISGLCEMGQPHEAE 209
+C S D Y R V + + + A + I+GLC + +EA
Sbjct: 490 GYCLSTSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDCVNEAY 549
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
EM +G+ P+ Y II + G + + ++V M G D SN+++
Sbjct: 550 QAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNILIDGL 609
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQDLNS 316
+L + L M +G+ TYN+++N+ C QD+NS
Sbjct: 610 CREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRA-----QDMNS 652
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G +A + E M G EP+ Y ++ G + + R+ ++M G
Sbjct: 259 LIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVG 318
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+V+T+ N+++ Y ++ + ++M+ G+ T+N +
Sbjct: 319 IQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNII 364
>gi|326527525|dbj|BAK08037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 460
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 90/199 (45%), Gaps = 14/199 (7%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q + +L+ +A L + G AE+++++ + +LG V+ Y L+ + C+ G
Sbjct: 7 QLSTRLMNVCLAALCRGGGIARAESVLVDAI-RLGMPPD--VVTYNTLLAAHCR---ASG 60
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D +A L+++ + V S+I+G G A +L +EM G+ P + Y
Sbjct: 61 LDAGFAVLHRM--REAGVSPDAITYNSLIAGAARRGLTMRALDLFDEMLQAGVAPDAWSY 118
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS---YGDHNELSRMVLWLQK 284
+++ R G ED R+ M G N +L +G RM +LQ+
Sbjct: 119 NALMHCLFRSGHPEDAYRVFADMAEKGVAPCATTYNTLLDGLFRFGHATNAYRMFRYLQR 178
Query: 285 MKDSGIPFSVRTYNSVLNS 303
+G+P + TYN+++N
Sbjct: 179 ---TGLPVGIVTYNTMING 194
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+FL ++G E A +LE + K G L Y L+ +FCK ++ D A L+
Sbjct: 304 LISFLCRKGLVEPALE-VLEQIPKYGCTPNSL--SYNPLLHAFCK---QKKMDKAMAFLD 357
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S Y + ++++ LC G+ A L+ +++ KG P Y +I G +
Sbjct: 358 LMV--SRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 415
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++ ++N+M S G + D + + + + + + + K++D GI +
Sbjct: 416 AGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 475
Query: 297 YNSVL 301
YN+++
Sbjct: 476 YNAII 480
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +M++G C GQ A L+ EM V EP + Y +I G G + ++++M
Sbjct: 128 AYNAMVAGYCGAGQLDAARRLVAEMPV---EPDAYTYNTLIRGLCGRGRTANALAVLDEM 184
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V ++L + + + + L +M+D G + TYN V+N
Sbjct: 185 LRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNG 237
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E ++ Q+ G
Sbjct: 269 VLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYG 328
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ + + +L M G + +YN++L +
Sbjct: 329 CTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTA 377
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A ++E++ G P+ Y +++ + + ++ ++ M S G
Sbjct: 304 LISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRG 363
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 364 CYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDG 412
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 30/155 (19%), Positives = 71/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+++ CK + G+ L+++ + + + +++G+C+ G+ +A
Sbjct: 193 VVTYTILLEATCK---RSGYKQAMKLLDEMRDKGCTPDI--VTYNVVVNGICQEGRVDDA 247
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ + G EP+ Y ++ G ED E ++ +M G + V NM++S
Sbjct: 248 IEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISF 307
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L+++ G + +YN +L++
Sbjct: 308 LCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHA 342
>gi|414868427|tpg|DAA46984.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 674
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
C L++S+ + + + ++ +L + S+++Y ++I+ G A
Sbjct: 149 CALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIY------NAVIAASVRAGAVDAAYLR 202
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME G R + V M++ + +
Sbjct: 203 FQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCN 262
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V L++MK+ G+ + TY S+++
Sbjct: 263 ASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSV 185
E+ ++++ +K G ER L K + GF N L+N +V
Sbjct: 426 ESYNIVIDCFAKAGEVERALETI---------KVMQESGFSPNLVTFNTLINGYLKLGNV 476
Query: 186 YVKRQALK---------------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ + LK S+I GLC Q +A N EM G+ P+ Y +
Sbjct: 477 HDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVL 536
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I+G G + ++N+M+ DG D N + S+ ++ + M G+
Sbjct: 537 IHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGV 596
Query: 291 PFSVRTYNSVLNS 303
TYN+++ +
Sbjct: 597 SPDSYTYNALIKA 609
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFD------DTYARLNQL--VNSSSSVYVKRQALKS------MISG 198
C L+D F K GFD ++ R + N S V L S +I
Sbjct: 375 CELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDC 434
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G+ A I+ M+ G P+ + +I GY +LG + D + + + G D
Sbjct: 435 FAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPD 494
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++ ++L +M + G+ +V+TYN +++ CS
Sbjct: 495 VITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSA 543
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 165 KRGFDDTYARLNQLVNSSSSVY--------VKRQALKSMISGLCEMGQPHEAENLIEEMR 216
+R D R +V S++ V V + L +++ +G H A + ++
Sbjct: 113 RRALGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVP 172
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
GL PS Y +I R G ++ QM +DG R D N ++ +
Sbjct: 173 RLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++M+ +GI +V TY +++
Sbjct: 233 EALRLVKQMERAGIRPNVVTYTMLVDG 259
>gi|255685730|gb|ACU28354.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685734|gb|ACU28356.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685738|gb|ACU28358.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685740|gb|ACU28359.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
gi|255685742|gb|ACU28360.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 81/165 (49%), Gaps = 8/165 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ + V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKTGS---VEDAIRLLHRMIDEGFNPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G ++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDXAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTY 297
G D+ C N ++ ++ H ++ + ++M ++ G +V TY
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTY 165
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++++M +G D V ++V
Sbjct: 3 NEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 62
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + + + Q + +G+ + Y+S+++
Sbjct: 63 VNGLCKNGRVEEAMDYFQTCRFNGLAINSMFYSSLIDG 100
>gi|225446761|ref|XP_002278350.1| PREDICTED: pentatricopeptide repeat-containing protein At3g59040
[Vitis vinifera]
gi|302143502|emb|CBI22063.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 94/213 (44%), Gaps = 15/213 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREE--AETLILETLSKLGSRERELVLFYCNLIDSFCK--H 162
F+ N K V++ + + G R + + L++ K RE E + + ++D+ + H
Sbjct: 292 FETNYKEVSKTYDQMQRAGLRPDVVSYALLINAYGK-ARREEEALAVFEEMLDAGVRPTH 350
Query: 163 DSKRGFDDTYARLNQLVNSSSSVY--VKRQ-------ALKSMISGLCEMGQPHEAENLIE 213
+ D +A ++ +V+ + +V+ ++R + +M+S AE
Sbjct: 351 KAYNILLDAFA-ISGMVDQARTVFKSMRRDRCTPDICSYTTMLSAYVNASDMEGAEKFFR 409
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
++ G EP+ Y +I GY ++ LE M +M+ G + + ++ +YG +
Sbjct: 410 RLKQDGFEPNVVTYGTLIKGYAKISNLEKMMEKYEEMQVHGIKANQAIYTAMMDAYGKNK 469
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ V W ++M G+P + N +L+ T
Sbjct: 470 DFGSAVFWFKEMGFCGVPPDRKATNILLSLAKT 502
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 51/113 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ + + EA + EEM G+ P+ Y ++ + G+++ + M D
Sbjct: 321 LINAYGKARREEEALAVFEEMLDAGVRPTHKAYNILLDAFAISGMVDQARTVFKSMRRDR 380
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
D +LS+Y + +++ + +++K G +V TY +++ + I
Sbjct: 381 CTPDICSYTTMLSAYVNASDMEGAEKFFRRLKQDGFEPNVVTYGTLIKGYAKI 433
>gi|242056929|ref|XP_002457610.1| hypothetical protein SORBIDRAFT_03g010260 [Sorghum bicolor]
gi|241929585|gb|EES02730.1| hypothetical protein SORBIDRAFT_03g010260 [Sorghum bicolor]
Length = 1089
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 77/156 (49%), Gaps = 7/156 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G + ++EM +P+ Y ++ G+ + LED IV ++E
Sbjct: 280 TVIDGLCREGSVEKVMGFLDEMEQVDAKPNLITYTSLVGGFCKRDRLEDAFSIVRKLEQT 339
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----I 307
G VD ++++ S +L R L +M++ GI S+ TYN+++N C
Sbjct: 340 GVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKGIKASIITYNAIINGLCKAGHTEKA 399
Query: 308 MSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELED 343
+ + + + +++F S L L +N +++ V ++D
Sbjct: 400 LEISEGVAADNFTYSTL-LHGYINRGDITGVMAIKD 434
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 26/190 (13%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
V +++ FLD+ Q + LI Y +L+ FCK D +D ++
Sbjct: 291 VEKVMGFLDEMEQVDAKPNLIT----------------YTSLVGGFCKRDR---LEDAFS 331
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ +L + V V +I LC+M A +L+ EM KG++ S Y II G
Sbjct: 332 IVRKL--EQTGVVVDEYVYSILIDSLCKMEDLDRAFSLLTEMENKGIKASIITYNAIING 389
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ G E I S+G D + +L Y + +++ ++ +++ SGI
Sbjct: 390 LCKAGHTEKALEI-----SEGVAADNFTYSTLLHGYINRGDITGVMAIKDRLEGSGISID 444
Query: 294 VRTYNSVLNS 303
V T N ++ +
Sbjct: 445 VVTCNVLIKA 454
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 17/195 (8%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRG 167
P L+ ++ K+ + E+A + I+ L + G E V Y LIDS CK D R
Sbjct: 308 PNLITYTSLVGGFCKRDRLEDAFS-IVRKLEQTGVVVDEYV--YSILIDSLCKMEDLDRA 364
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
F N+ + +S Y ++I+GLC+ G +A + E G+ F Y
Sbjct: 365 FSLLTEMENKGIKASIITY------NAIINGLCKAGHTEKALEISE-----GVAADNFTY 413
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+++GY G + + I +++E G +D V N+++ + N+++ KM +
Sbjct: 414 STLLHGYINRGDITGVMAIKDRLEGSGISIDVVTCNVLIKASFMINKVNDAWSLFHKMPE 473
Query: 288 SGIPFSVRTYNSVLN 302
G+ + TY+++++
Sbjct: 474 MGLRPNTITYHTIID 488
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++SGLC G EA L + + + P+ Y +I R GLL+D +++ +M +
Sbjct: 761 SVLSGLCHQGCLTEAFRLFDYLENSNMLPTIITYTILIGALCREGLLDDADQLFQKMSTK 820
Query: 254 GTRVDTVCSNMVLSSY 269
G + T N+++S Y
Sbjct: 821 GIKPTTRVYNLLISGY 836
Score = 38.9 bits (89), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I LC G +A+ L ++M KG++P+ Y +I GY GL E +++ +E
Sbjct: 797 LIGALCREGLLDDADQLFQKMSTKGIKPTTRVYNLLISGYCNFGLTEKALELMSHLE 853
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 1/117 (0%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
S+IS LC G EA L + MR GL P + +I G R G LE ++ ++ M S
Sbjct: 569 NSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCS 628
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIM 308
+G DTV N ++++Y +++ + ++ KM +G + TYN ++S CS M
Sbjct: 629 NGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHM 685
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A + I+GLC + +EA EM +G+ P+ F Y II R G + + ++ M
Sbjct: 532 AFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNM 591
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G D SN+++ +L + L M +G+ TYN+++N+
Sbjct: 592 RQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINA 644
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 75/188 (39%), Gaps = 18/188 (9%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC G+ +NL+ +M GL P Y II Y R + +N+M + G
Sbjct: 606 LIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLAAG 665
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQD 313
D N+ + S ++ L++ L ++ G P TYN++++ CS ++
Sbjct: 666 CEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGICSDVLDRAMI 725
Query: 314 LNSNDFPLSILELTEVLNEEEVSVVKE-------------LEDSSVLDEAMK----WDSG 356
L ++ T LN K+ EDS V D+A + W
Sbjct: 726 LTGRLIKMAFQPNTITLNVFLSHFCKQGFGKRALMWAEKLREDSFVFDDATRNIIDWARR 785
Query: 357 ETKLDLHG 364
E + D H
Sbjct: 786 ELEDDPHA 793
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G +A L EEM G EP+ Y ++ G + + R+ ++M G
Sbjct: 260 LIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVG 319
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ +T+ N+++ Y + + ++MK G+ T+N +
Sbjct: 320 IQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNII 365
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ H A N+ EEM +G PS + +I G+ GL+ ++ M G V VCS
Sbjct: 198 GEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGI-VPNVCS 256
Query: 263 -NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N+++ + ++M SG +V TYN +++
Sbjct: 257 YNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVD 297
>gi|242054943|ref|XP_002456617.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
gi|241928592|gb|EES01737.1| hypothetical protein SORBIDRAFT_03g039460 [Sorghum bicolor]
Length = 410
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 16/184 (8%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG----FDDTYARLNQLV 179
+GQRE L+ E + G E L + C L+ +C+ + FD+ L +V
Sbjct: 86 RGQREMGFALVGEM--RRGGVEPNLYTYNC-LVGEWCRTGEFKSARLLFDEM--PLKGVV 140
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ S + +I+GLC G+ +A L E MR +G+ PS + +I GYG+ G
Sbjct: 141 RNVVSYNI-------LIAGLCRHGKLKDAAQLFEAMRREGIHPSMVTFNLLIDGYGKAGK 193
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + NQM++ G + V N ++ + +++ + MK+ + + TY
Sbjct: 194 MSNALHFFNQMKAAGLQPSVVTYNELIGGFCRARDIAHAIRAFSDMKERRLAPTKVTYTI 253
Query: 300 VLNS 303
++ +
Sbjct: 254 LIGA 257
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 144 RERELV---LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
+ER L + Y LI +F K + D + L+++ + V V Q+ ++ LC
Sbjct: 240 KERRLAPTKVTYTILIGAFAKENE---MDRAFEMLSEMEKAGLEVDV--QSYGVLLHALC 294
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--TRVD 258
G+ A L + M KG++P+ Y +IYGYGR G R++ +M G V
Sbjct: 295 MEGKMMHARKLFQSMDSKGVKPNNVLYDMMIYGYGREGSSYKALRLIMEMRKSGLIPNVA 354
Query: 259 TVCSNM-VLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ C + +L + G E ++ M+D+G+ S
Sbjct: 355 SYCLTIRLLCNEGKCQEAEALI---GDMEDAGLQTS 387
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 46/108 (42%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +++ G C+ G EA + + M G+ P+ Y +I+GY G E +V +M
Sbjct: 40 ACTALVHGCCQSGDVAEARRVFDVMPRLGVTPNEVTYTALIHGYFVRGQREMGFALVGEM 99
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + N ++ + E L +M G+ +V +YN
Sbjct: 100 RRGGVEPNLYTYNCLVGEWCRTGEFKSARLLFDEMPLKGVVRNVVSYN 147
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 82/185 (44%), Gaps = 19/185 (10%)
Query: 133 LILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQL 178
+++ L K+G + L LF Y LID+ C D +
Sbjct: 400 ILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESA 459
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
S+V ++I GLC+ + EAE + ++M ++G+ + + +I G +
Sbjct: 460 GCPRSTV-----TYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDK 514
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++D ++++QM S+G + + + N +L+ Y ++ + LQ M +G V TY
Sbjct: 515 RIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYG 574
Query: 299 SVLNS 303
+++N
Sbjct: 575 TLING 579
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK+ ++ LNQ+V + ++I LC + EA
Sbjct: 325 VFTYNIVVNCLCKNGQ---LEEAKGILNQMVERGCLPDIT--TFNTLIVALCSGNRLEEA 379
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L ++ +KGL P + + +I ++G + R+ +M+S G D V N ++ +
Sbjct: 380 LDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDN 439
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L++M+ +G P S TYN++++
Sbjct: 440 LCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDG 474
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 80/178 (44%), Gaps = 11/178 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID CK ++ + +++ S +++ ++I GLC+ + +A L
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAI-----TFNTLIDGLCKDKRIDDANQL 522
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I +M +GL+P+ Y I+ Y + G ++ I+ M ++G VD V +++
Sbjct: 523 ISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCK 582
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEV 329
+ L+ M+ G+ + + YN V I S+ + N+ D E+TEV
Sbjct: 583 AGRTQVALKLLRGMRIKGMRATPKAYNPV------IQSLFRRNNTRDAMNLFREMTEV 634
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK +D + Q + ++ + + ++GLC+ G A +++
Sbjct: 261 LINGYCKLGR---VEDALGYIQQEI--ANGFEPDQITYNTFVNGLCQNGHVGHALKVMDV 315
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P F Y ++ + G LE+ + I+NQM G D N ++ + N
Sbjct: 316 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNR 375
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ V T+N ++N+
Sbjct: 376 LEEALDLARQVTLKGLSPDVYTFNILINA 404
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 75/170 (44%), Gaps = 7/170 (4%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+LE +S G E + L+ F + S + AR+ ++ S + V V
Sbjct: 205 VLMLEEMSSSGVAPDETT--FTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVN--- 259
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I+G C++G+ +A I++ G EP Y + G + G + ++++ M
Sbjct: 260 --VLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMV 317
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+G D N+V++ + +L L +M + G + T+N+++
Sbjct: 318 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLI 367
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 75/177 (42%), Gaps = 7/177 (3%)
Query: 128 EEAETLILETL-SKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
E ++ +LET+ S++G R + V+ + L+ + C+ R L ++ SSS V
Sbjct: 162 EGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVR---TAVLMLEEM--SSSGV 216
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+++ G E G A + M G P+ +I GY +LG +ED
Sbjct: 217 APDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALG 276
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ Q ++G D + N ++ + + + + M G V TYN V+N
Sbjct: 277 YIQQEIANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVN 333
>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
Length = 458
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 96/197 (48%), Gaps = 10/197 (5%)
Query: 108 QWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+ +P +V + IIA L K ++A +L T+ K G + Y +++ +C
Sbjct: 234 RISPNVVTYSSIIAALCKAQAMDKAME-VLNTMVKNGVMPD--CMTYSSILHGYCSSGQP 290
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ + LN++ S V +S+++ LC+ G+ +A + + M +GLEP
Sbjct: 291 K---EDIGTLNKM--RSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIA 345
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y+ ++ GY G L +M +++ M +G + D N+++ +Y ++ + +L KM
Sbjct: 346 TYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKM 405
Query: 286 KDSGIPFSVRTYNSVLN 302
+ G+ +V Y +V++
Sbjct: 406 RQHGLNPNVVCYGTVID 422
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 73/165 (44%), Gaps = 7/165 (4%)
Query: 149 VLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +I+ F K DS + + + L + ++ + Y S+I+ LC+ +
Sbjct: 204 VVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTY------SSIIAALCKAQAMDK 257
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ M G+ P Y I++GY G ++ +N+M SDG + V +++
Sbjct: 258 AMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMN 317
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ ++ M G+ + TY ++L +T ++++
Sbjct: 318 YLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVE 362
>gi|224093190|ref|XP_002309826.1| predicted protein [Populus trichocarpa]
gi|222852729|gb|EEE90276.1| predicted protein [Populus trichocarpa]
Length = 1480
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 77/150 (51%), Gaps = 18/150 (12%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C +P E +L+ EMRV GLEP YK ++ +G+ L+E E + +++S
Sbjct: 993 TLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSK 1052
Query: 254 GTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST---- 306
G ++D + ++ Y G H++ R+ MKD+G+ ++ T + ++ S +
Sbjct: 1053 GCKLDRSFYHTMMKIYRNSGSHSKAERL---FSMMKDAGVEPTIATMHLLMVSYGSSGQP 1109
Query: 307 -----IMSMLQDLNSNDFPLSILELTEVLN 331
++S L++ SN LS L + V++
Sbjct: 1110 QEAEKVLSNLKETGSN---LSTLPYSSVID 1136
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/319 (19%), Positives = 123/319 (38%), Gaps = 43/319 (13%)
Query: 16 RCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALN 75
R R R +++ + A+ ++ ++L+ L +T+D A L + V +P +
Sbjct: 132 RKSRTRVKKMNKLALKRAKDWRERVKYLTDRILGLTQDQFVADVLDDRKVQMTPTDLCFV 191
Query: 76 ALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135
S + ++ H A +Y + W+ N ++++ I++ L K Q E L +
Sbjct: 192 VKS--VGQESWHR-----ALEVYEWLNLRHWYSPNARMLSTILSVLGKANQ----EALAV 240
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSS 183
E + V Y ++ + + +RG N L+N+
Sbjct: 241 EVFMRAEPSAGNTVQVYNAMMGVYARRGRFNKVQELLDLMRERGCKPDLVSFNTLINARL 300
Query: 184 SV-------------YVKRQALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
V+R L+ ++IS EA + ++M +P
Sbjct: 301 KAGAMMPNLAIELLNEVRRSGLRPDTITYNTLISACSRASNLEEAAKVFDDMEAHHCQPD 360
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ Y +I YGR GL E++ N +ES G D V N +L ++ + ++ +
Sbjct: 361 LWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWE 420
Query: 284 KMKDSGIPFSVRTYNSVLN 302
+M G TYN++++
Sbjct: 421 EMVKIGFGKDEMTYNTMIH 439
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS G +AE L ++ +G P Y ++Y + R G +E ++ I +M
Sbjct: 366 AMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKI 425
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + N ++ YG + + + M+ SG TY +++S
Sbjct: 426 GFGKDEMTYNTMIHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDS 475
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 173 ARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ QL N S + + S++ G + + + EEM G Y +
Sbjct: 378 GKAEQLFNDLESRGFFPDAVSYNSLLYAFAREGNVEKVKEIWEEMVKIGFGKDEMTYNTM 437
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I+ YG+ G E ++ M+S G D V +++ S G N+++ + +M ++G+
Sbjct: 438 IHMYGKQGQNELALQLYRDMQSSGRNPDAVTYTVLIDSLGKTNKIAEAAGVMSEMLNTGV 497
Query: 291 PFSVRTYNSVL 301
+++TY++++
Sbjct: 498 KPTLKTYSALI 508
Score = 41.6 bits (96), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 36/213 (16%)
Query: 152 YCNLIDSFCK-HDSKRGFD--------------DTYARL------NQLVNSSSSVY---- 186
Y LI +C+ H + GF DTY L QLV + ++
Sbjct: 991 YNTLIVMYCRDHRPEEGFSLMHEMRVAGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQ 1050
Query: 187 -----VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ R +M+ G +AE L M+ G+EP+ ++ YG G +
Sbjct: 1051 SKGCKLDRSFYHTMMKIYRNSGSHSKAERLFSMMKDAGVEPTIATMHLLMVSYGSSGQPQ 1110
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ E++++ ++ G+ + T+ + V+ +Y + + + + L +MK G+ R + +
Sbjct: 1111 EAEKVLSNLKETGSNLSTLPYSSVIDAYLRNGDYNIGIQKLIQMKKEGLEPDHRIWTCFI 1170
Query: 302 NSC------STIMSMLQDLNSNDFPLSILELTE 328
+ S + +L L F L I LTE
Sbjct: 1171 RAASLSRRTSEAIVLLNALQDAGFDLPIRLLTE 1203
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 52/115 (45%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ + ++ M+ G E + + M+ G P+ Y+ + R + D+E +
Sbjct: 881 ISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPTMHLYRVMARLLSRGKQVRDVEAM 940
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ME G + D N VL Y + + + Q++K+ G+ TYN+++
Sbjct: 941 LSEMEEAGFKPDLSIWNSVLKMYVAIEDFRKTIQVYQRIKEDGLEPDEDTYNTLI 995
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE-YKCIIYGYGRL 237
+ +S S+Y +SM+ C+MG P A +LI+ G+ + Y +I YGRL
Sbjct: 738 IKASESLY------ESMVLLYCKMGFPETAHHLIDFAESDGILLNNISLYVNVIEAYGRL 791
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
L + E + + VD N ++ +Y R M G +V T
Sbjct: 792 KLWQKAESVAGNLRQRCITVDRKVWNALIEAYAASGCYERARAIFNTMMRDGPSPTVDTI 851
Query: 298 NSVLNS 303
N +L +
Sbjct: 852 NGLLQA 857
>gi|413941673|gb|AFW74322.1| hypothetical protein ZEAMMB73_642674 [Zea mays]
Length = 1028
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 84/186 (45%), Gaps = 20/186 (10%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVK-------RQAL-----------KSMISGLCEMGQPH 206
+RGF AR + NS ++YVK R A SMI G C +
Sbjct: 193 RRGFMAEGARDVPVGNSVLAMYVKCGELGRARAAFDMMGQRDLCTWNSMIFGCCRSNEWE 252
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA L+++MR +G EP + ++ Y R G L+ ++ QME G D V ++
Sbjct: 253 EARRLLDDMRRQGTEPGLVTWNTLVSSYARSGELDVAMEMLEQMEESGVAPDVVTWTSLV 312
Query: 267 SSYGDHNELSRMVLW-LQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
S + H + LW +M+ +G+ + T S +++C+++ + Q + + + +
Sbjct: 313 SGF-VHGDRGGEALWCFARMRLAGVEPNGMTIASAISACASLRLLSQGMELHCHAIKVGS 371
Query: 326 LTEVLN 331
+ VL+
Sbjct: 372 VNNVLS 377
>gi|224576625|gb|ACN56986.1| At1g03560-like protein [Capsella rubella]
gi|224576631|gb|ACN56989.1| At1g03560-like protein [Capsella rubella]
gi|224576633|gb|ACN56990.1| At1g03560-like protein [Capsella rubella]
Length = 196
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H +++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVNEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 101
>gi|414868428|tpg|DAA46985.1| TPA: hypothetical protein ZEAMMB73_842284 [Zea mays]
Length = 683
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
C L++S+ + + + ++ +L + S+++Y ++I+ G A
Sbjct: 149 CALVESWGRLGLAHYAHEVFVQVPRLGLRPSTAIY------NAVIAASVRAGAVDAAYLR 202
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++M G P F Y +++G R G++++ R+V QME G R + V M++ + +
Sbjct: 203 FQQMPADGCRPDCFTYNTLVHGVCRRGIVDEALRLVKQMERAGIRPNVVTYTMLVDGFCN 262
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V L++MK+ G+ + TY S+++
Sbjct: 263 ASRVEEAVCVLERMKEKGVSATEATYRSLVHG 294
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 75/193 (38%), Gaps = 27/193 (13%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSV 185
E+ ++++ +K G ER L K + GF N L+N +V
Sbjct: 426 ESYNIVIDCFAKAGEVERALETI---------KVMQESGFSPNLVTFNTLINGYLKLGNV 476
Query: 186 YVKRQALK---------------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ + LK S+I GLC Q +A N EM G+ P+ Y +
Sbjct: 477 HDAKAFLKMVMEHGLMPDVITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVL 536
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I+G G + ++N+M+ DG D N + S+ ++ + M G+
Sbjct: 537 IHGLCSAGHVSKAIELLNKMKMDGITPDAYSFNAPILSFCRMRKIEKAQKLFNDMSRYGV 596
Query: 291 PFSVRTYNSVLNS 303
TYN+++ +
Sbjct: 597 SPDSYTYNALIKA 609
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 15/169 (8%)
Query: 153 CNLIDSFCKHDSKRGFD------DTYARLNQL--VNSSSSVYVKRQALKS------MISG 198
C L+D F K GFD ++ R + N S V L S +I
Sbjct: 375 CELVDDFIKKGGNLGFDMYIMIIKSFLRCKDISKANKYFSQMVSDGLLSSVESYNIVIDC 434
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
+ G+ A I+ M+ G P+ + +I GY +LG + D + + + G D
Sbjct: 435 FAKAGEVERALETIKVMQESGFSPNLVTFNTLINGYLKLGNVHDAKAFLKMVMEHGLMPD 494
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ ++ ++L +M + G+ +V+TYN +++ CS
Sbjct: 495 VITFTSLIDGLCHTHQLDDAFNCFSEMSEWGVRPNVQTYNVLIHGLCSA 543
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 165 KRGFDDTYARLNQLVNSSSSVY--------VKRQALKSMISGLCEMGQPHEAENLIEEMR 216
+R D R +V S++ V V + L +++ +G H A + ++
Sbjct: 113 RRALGDALLRRGPVVLSAALVADVRSCGCEVSEELLCALVESWGRLGLAHYAHEVFVQVP 172
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
GL PS Y +I R G ++ QM +DG R D N ++ +
Sbjct: 173 RLGLRPSTAIYNAVIAASVRAGAVDAAYLRFQQMPADGCRPDCFTYNTLVHGVCRRGIVD 232
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++M+ +GI +V TY +++
Sbjct: 233 EALRLVKQMERAGIRPNVVTYTMLVDG 259
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C SK D+ L Q+ S + V ++I G C+ + EAE +
Sbjct: 438 YNMLIDSLC---SKGKLDEALNMLKQMELSGCARSVI--TYNTLIDGFCKANKTREAEEI 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM V G+ + Y +I G + +ED ++++QM +G + D N +L+ +
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCR 552
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +Q M +G + TY ++++
Sbjct: 553 GGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I+ L K G+ +EA +E L ++ +R+ + Y LI + CK + + AR
Sbjct: 336 VISGLCKLGEVKEA----VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE-LAR- 389
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
V +S + S+I GLC A L EEMR KG EP F Y +I
Sbjct: 390 ---VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G L++ ++ QME G + N ++ + N+ +M+ G+ +
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 507 TYNTLIDG 514
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
++ FCK +D + ++ N + + ++++GLC+ G A +++
Sbjct: 265 IVHGFCKEGR---VEDALNFIQEMSNQDG-FFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P + Y +I G +LG +++ +++QM + +TV N ++S+ N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + GI V T+NS++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLI 407
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 97/213 (45%), Gaps = 32/213 (15%)
Query: 114 VAEIIAFLDKQGQREEAE-----TLILETLSKLGSRERELVLF-------------YCN- 154
+ E A LD+ R+ +++ + S+ G + L LF C+
Sbjct: 274 MGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKGVKIGAYTCSI 333
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNS----SSSVYVKRQALKSMISGLCEMGQPHEAEN 210
L++ CK ++ L LVNS ++ +Y ++I+G C++G A +
Sbjct: 334 LLNGLCKDGKISKAEEV---LQTLVNSGLLQTTVIY------NTLINGYCQIGDLEGAFS 384
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ ++M+ + + P Y +I G G++ + + +V +ME +G N ++ +YG
Sbjct: 385 IFQQMKSRLIRPDHITYNALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYG 444
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L M++ G+ +V +Y S++N+
Sbjct: 445 RAGQLEKCFIILSDMQEKGLKPNVVSYGSIVNA 477
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 112/235 (47%), Gaps = 20/235 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL-NQLV 179
L K G+ +AE +L+TL G + ++ Y LI+ +C+ G + ++ ++L+
Sbjct: 338 LCKDGKISKAEE-VLQTLVNSGLLQTTVI--YNTLINGYCQIGDLEGAFSIFQQMKSRLI 394
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
Y ++I+GL ++ + EA +L+ EM G+ PS + +I YGR G
Sbjct: 395 RPDHITY------NALINGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQ 448
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
LE I++ M+ G + + V +++++ + ++ V L M + + YN+
Sbjct: 449 LEKCFIILSDMQEKGLKPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNA 508
Query: 300 VLNS---CSTI---MSMLQDLNSNDFPLSI----LELTEVLNEEEVSVVKELEDS 344
++++ C + + + + S+ P SI L + + + ++S +EL DS
Sbjct: 509 IIDAYIECGSTDQAFMLAEKMKSSGVPPSIVTYNLLIKGLCKQSQISEAEELLDS 563
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E +++EM + + P GF Y + G+ R G + M + + G
Sbjct: 264 LLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTGDSQTMLSLFEESVKKG 323
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +++L+ ++S+ LQ + +SG+ + YN+++N
Sbjct: 324 VKIGAYTCSILLNGLCKDGKISKAEEVLQTLVNSGLLQTTVIYNTLING 372
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 56/111 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ C+ G+ EA ++++M +K + P Y II Y G + + +M+S
Sbjct: 473 SIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFMLAEKMKSS 532
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G V N+++ +++S L +++ G+ V +YN+++++C
Sbjct: 533 GVPPSIVTYNLLIKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISAC 583
>gi|357114607|ref|XP_003559090.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 486
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++M +G +P+ F Y +++ YG +ED ME DG
Sbjct: 247 MVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMEKDG 306
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D V N +++++ + + M+ GI + RT+N +LN
Sbjct: 307 IVPDVVVYNALVTAFCKVKKFENAFRVMDDMEGHGIAPNSRTWNIILN 354
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 63/152 (41%), Gaps = 6/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ +L+ + CK + R + + ++N N + Y ++ G + + +
Sbjct: 175 FNSLLGALCKSKNVRKAQEIFDKMNGRFNPDAKTY------SILLEGWGKAPNLPKMREV 228
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM G +P Y ++ + G +E+ +V M S G + T ++++ +YG
Sbjct: 229 YSEMLDAGCQPDIVTYGIMVDSLCKTGRVEEAVLVVQDMSSRGCQPTTFIYSVLVHTYGV 288
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V M+ GI V YN+++ +
Sbjct: 289 EMRIEDAVATFLDMEKDGIVPDVVVYNALVTA 320
>gi|357111163|ref|XP_003557384.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Brachypodium distachyon]
Length = 821
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++ GQP +A +EMR P+ Y +I YG G+ ++ ++++ME D
Sbjct: 407 TLLNAYGRSGQPEKAREAFKEMRKNSCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKD 466
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V + +L++ G +++++ L+ K GI ++ YNS + S
Sbjct: 467 GIPPDVVSISTLLTACGRCRQITKIDTILEAAKSRGIKLNIVCYNSGIGS 516
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G +A + + ++ GL P Y ++ YGR G E +M +
Sbjct: 372 ALLGAYASRGMHADALGIFKLLKQNGLRPDVVSYTTLLNAYGRSGQPEKAREAFKEMRKN 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC------STI 307
R + V N ++ +YG + L +M+ GIP V + +++L +C + I
Sbjct: 432 SCRPNIVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLTACGRCRQITKI 491
Query: 308 MSMLQDLNSNDFPLSIL 324
++L+ S L+I+
Sbjct: 492 DTILEAAKSRGIKLNIV 508
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++ S+I + G+ EAE+ M+ G P Y +I Y G + +
Sbjct: 577 KEVYSSLICSYVKQGKLTEAESTFSSMKESGCLPDVLTYTAMIEAYNDDGSWRNAWDLFK 636
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS--- 305
+ME + + D + + ++ + ++ R++ ++ MK+ IP + + Y ++ SCS
Sbjct: 637 EMEGNTVQPDAIICSSLMEALNRGSQHERVLQLMELMKEKCIPLNQKAYFEIIASCSMLR 696
Query: 306 ---TIMSMLQDLNSNDFPLSILELTEVL 330
T +++ L+S+ +S+ L +L
Sbjct: 697 DWKTASEIIEHLDSSLSSISVGTLNHLL 724
>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
Length = 1035
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 18/205 (8%)
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
E+ E L E L+ +G ++F+ ++ + CK + +LV+S + V
Sbjct: 465 EKVEELFFEMLN-VGIHPN--IVFFNTILCNLCK-------EGRVMEGQRLVDSIECMGV 514
Query: 188 KRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ + ++I G C G EA L+E M GL+P F Y +++GY + G ++
Sbjct: 515 RPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYS 574
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C 304
+M S+G V N +L S M +SG + + TYN +LN C
Sbjct: 575 HFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLC 634
Query: 305 ST-----IMSMLQDLNSNDFPLSIL 324
+ + M Q+L S L+I+
Sbjct: 635 KSNCVDEAIKMFQNLCSKGLQLNII 659
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 102/227 (44%), Gaps = 22/227 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID+ CK DD + NQ++N + + S++ GLC + + + E L
Sbjct: 416 YGALIDALCKLGR---VDDAEVKFNQMINEGVTPDI--VVFSSLVYGLCTVDKWEKVEEL 470
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-- 269
EM G+ P+ + I+ + G + + +R+V+ +E G R D + N ++ +
Sbjct: 471 FFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCL 530
Query: 270 -GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLS 322
G +E S++ L+ M G+ +YN++L+ + S + + SN
Sbjct: 531 AGTIDEASKL---LEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPG 587
Query: 323 ILELTEVLN----EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGM 365
++ +L+ + S KEL ++++ KWD + L+G+
Sbjct: 588 VVTYNTILHGLFQTKRFSEAKELY-LNMINSGTKWDIYTYNIILNGL 633
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ LC+ G+ EA + M KG++PS Y +++GY G L +M ++N M ++
Sbjct: 313 SLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVAN 372
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N+ S+Y + + + KM+ G+ +Y +++++
Sbjct: 373 GISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDA 422
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ AE + ++M G++P+ Y C+I+GY +G +++ R++ +M +
Sbjct: 243 TVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAG 302
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST--IMSML 311
G + + +L+ + + M GI SV TY +L+ +T +S +
Sbjct: 303 GPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEM 362
Query: 312 QDL 314
DL
Sbjct: 363 HDL 365
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G GQ + NL EM +G+ P Y +I G + L + E + QM +
Sbjct: 208 TVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDN 267
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + + N ++ Y + +V L++M G + TY S+LN
Sbjct: 268 GVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLN 316
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 74/180 (41%), Gaps = 8/180 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ L + G+ EA+ L L S + SR + + Y +++ CK + D+ +
Sbjct: 832 ILHGLFQTGRFSEAKELYL---SMINSRTQMNIYTYNIILNGLCKSNC---VDEAFKMFQ 885
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L S + + MI L + G+ +A +L + GL P Y+ +
Sbjct: 886 SLC--SKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIE 943
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE+ + + ME GT +D+ N ++ ++SR +L K+ + T
Sbjct: 944 EGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAGAYLSKLDEKNFSLEAST 1003
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCK------------HDSKRGFDDTYARLNQLVNS 181
+L L K G R RE F+ ++I K + +K + + LN +V
Sbjct: 314 LLNYLCKNG-RCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMV-- 370
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ + S + G +A ++ +MR +GL P Y +I +LG ++
Sbjct: 371 ANGISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVD 430
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D E NQM ++G D V + ++ ++ ++ +M + GI ++ +N++L
Sbjct: 431 DAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTIL 490
Query: 302 -NSC 304
N C
Sbjct: 491 CNLC 494
>gi|302822123|ref|XP_002992721.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
gi|300139462|gb|EFJ06202.1| hypothetical protein SELMODRAFT_135826 [Selaginella moellendorffii]
Length = 449
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 15/195 (7%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD---DT 171
A+II + KQGQ A + S+L R +F ++ + R D D
Sbjct: 100 AKIIDTMGKQGQLRLASWI----FSQLQLSSRTTPVFNAIIMAHLRCKNVARALDSALDH 155
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLC-EMGQPHEAENL-IEEMRVKGLEPSGFEYKC 229
+ + V+S S+ A +M++ C + G +AE L +E +R L+P + +
Sbjct: 156 FGHMKTSVHSCPSL-----ATYNMLTRACAQAGLTDKAEALFLELLRRDDLKPDAYTFNG 210
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-S 288
I+ Y + GL DME + +M G R D V N+++ +YG + +M + + + S
Sbjct: 211 IMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLS 270
Query: 289 GIPFSVRTYNSVLNS 303
G S T+NS+L S
Sbjct: 271 GCKPSATTFNSMLAS 285
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+ G +PS + ++ YG+ L ME+++ +M+ G D N ++SSYG EL
Sbjct: 269 LSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELD 328
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M KM S + V T + +L +
Sbjct: 329 TMRKCFDKMVRSPVKPQVSTLDVLLRA 355
>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 1 [Brachypodium distachyon]
gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g09060-like isoform 2 [Brachypodium distachyon]
Length = 704
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 37/255 (14%)
Query: 76 ALSHL-----LSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR--- 127
AL+HL P T P+ L F L R+ S P + ++ L + R
Sbjct: 30 ALAHLDLLVSTWPAYTPPQ--PLLFHLLRRLATSS-----PSRLPRLLGILPRLRHRPRF 82
Query: 128 -EEAETLILETLSK-------LGSRERELVLFYCN--------LIDSFCKHDSKRGFDDT 171
E A ++L S+ L + R CN L+D+F + R F D
Sbjct: 83 SESAALVVLSAFSRALMPDAALAAFRRLPSFLGCNPGVRSHNALLDAFVR---ARRFSDA 139
Query: 172 YARLNQLVNSSSS--VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
A L + + + Q M+ LC G A L + +R +GL P Y
Sbjct: 140 DAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYST 199
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR-MVLWLQKMKDS 288
++ G+ + L++ ++++M S + D VC N +L + E + M +W Q ++D
Sbjct: 200 LMSGFVKNNRLDNALYLLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDP 259
Query: 289 GIPFSVRTYNSVLNS 303
G ++ TYN +L+
Sbjct: 260 GASPNLATYNVMLDG 274
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 65/137 (47%)
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
G D L +L+ S+ +MI GLCE G +++ ++EE R G E F
Sbjct: 383 GMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFS 442
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I G + G L+D ++ ++ D + ++ N +++ + ++ S + +M
Sbjct: 443 YSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMA 502
Query: 287 DSGIPFSVRTYNSVLNS 303
++ + TYN++++
Sbjct: 503 ENDCSPTTITYNTLIHG 519
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 1/107 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ GLC++G EA ++ E M +P Y +I+G R ++ R+ ++M G
Sbjct: 271 MLDGLCKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTG 330
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V N +L + + + M SGI +V +YN +L
Sbjct: 331 LVPDVVIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIML 376
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 88/191 (46%), Gaps = 10/191 (5%)
Query: 108 QWNP--KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+W P K ++ L G+ ++A L E +++ + +LV Y L+DS CK+
Sbjct: 366 EWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVAR--GQMPDLVT-YSILLDSLCKNCH- 421
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
++ A L + +S++ Q +I G+C G+ A +L + KGL PS +
Sbjct: 422 --LEEAMALLKAI--EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVW 477
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+G + GLL + ++ +M+ + D N + + +NE R + L++M
Sbjct: 478 TYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEM 537
Query: 286 KDSGIPFSVRT 296
G V T
Sbjct: 538 LARGFSADVST 548
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 92/200 (46%), Gaps = 14/200 (7%)
Query: 110 NPKLVAEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
N K++ +++ F L K+G+ EA I++ + + G V+ Y L+D C
Sbjct: 259 NSKILPDVVIFSTVVDALCKEGKVTEAHE-IVDMMIQRGVEPD--VVTYTTLMDGHCLQS 315
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D+ + +V + V + ++I+G C++ + +A L EEM K P
Sbjct: 316 E---MDEAVKVFDMMVRKGFAPDVI--SYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPD 370
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +++G +G L+D + ++M + G D V +++L S + L + L+
Sbjct: 371 TKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLK 430
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
++ S + ++ YN +++
Sbjct: 431 AIEASNLNPDIQVYNIIIDG 450
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 109/253 (43%), Gaps = 41/253 (16%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L+ ++ +E FQ N +I L K G A L L ++ + G+ + ++V+ Y
Sbjct: 145 ALHLFDKMIDEG-FQPNVVTYGTLINGLCKVGNTSAAIRL-LRSMEQ-GNCQPDVVI-YT 200
Query: 154 NLIDSFCK-HDSKRGFD------------DTYAR-------------------LNQLVNS 181
++IDS CK F+ D + LNQ+VN
Sbjct: 201 SIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN- 259
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S + +++ LC+ G+ EA +++ M +G+EP Y ++ G+ ++
Sbjct: 260 -SKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMD 318
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSV 300
+ ++ + M G D + +++ Y +++ + + ++M + IP +TYN++
Sbjct: 319 EAVKVFDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIP-DTKTYNTL 377
Query: 301 LNSCSTIMSMLQD 313
++ + LQD
Sbjct: 378 MHGLCHV-GRLQD 389
>gi|224576657|gb|ACN57002.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 101
>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 917
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 77/157 (49%), Gaps = 19/157 (12%)
Query: 152 YCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
+C +ID+FCK +++ FD+ + ++ ++ VY MISG + +
Sbjct: 361 FCTIIDAFCKEGNVELARKYFDEIE---DMGLSQNTIVY------NIMISGYVKARDISQ 411
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EEMR K + P G + ++ G+ R G ED R++ + G D+ ++ ++
Sbjct: 412 ANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVA 471
Query: 268 SY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G ++E ++ L+ + GIP SV +NS++
Sbjct: 472 GLCWAGRYDEAMKL---LENLLGKGIPPSVVAFNSII 505
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 55/120 (45%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
V+ A + I+GLC G +A ++ +M KG P+ F Y +I G+ ++G L +
Sbjct: 598 GVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEA 657
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V +M G D NM++ + + M G+ + TYN++++
Sbjct: 658 LKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDG 717
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 52/114 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C++G+ +EA L+ EM +GL P F II G + G ++ M
Sbjct: 643 SLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRM 702
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G D V N ++ Y ++ + KM DSG + TYN ++ T+
Sbjct: 703 GLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYCTV 756
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ A +M GL P Y +I GY + + + ++ +M G
Sbjct: 679 IICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSG 738
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIMSMLQD 313
D N+ + Y +++R V+ L+++ GI + TYN+++N+ C+ I+
Sbjct: 739 WEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINAVCNVILDHAMI 798
Query: 314 LNSNDFPLSILELTEVLN 331
L + ++ + T +N
Sbjct: 799 LTAKLLKMAFVPNTVTVN 816
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG- 254
++GLC G+ EA L+E + KG+ PS + II YG GL E M G
Sbjct: 470 VAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGL 529
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
T + CS++++S L + L M D G P + + +L+
Sbjct: 530 TPSSSTCSSLLISLV-RKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDG 577
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
K D+ + L +++ V A ++ G +G + AE+L EM+ +G+ P
Sbjct: 546 KGSLDEAWIALYDMIDKGFPV--TNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVFPDA 603
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ I G GL+ D + + M G + N ++ + +L+ + +++
Sbjct: 604 VAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKLNEALKLVRE 663
Query: 285 MKDSGIPFSVRTYNSVL 301
M G+ + T N ++
Sbjct: 664 MNKRGLLPDIFTVNMII 680
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 54/107 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C GQ A +L+ M G +PS + II + + G +E + +++E G
Sbjct: 329 VINANCLKGQSSYALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMG 388
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+T+ N+++S Y ++S+ L ++M+ I T+N+++
Sbjct: 389 LSQNTIVYNIMISGYVKARDISQANLLFEEMRTKDIVPDGITFNTLV 435
Score = 38.1 bits (87), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 9/184 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
V II L KQG+ + A ++ + ++G ++ Y LID +CK G DD
Sbjct: 676 VNMIICGLCKQGRMKLAIETFMD-MCRMGLSPD--IVTYNTLIDGYCKAFDVGGADDLMM 732
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
++ S S I G C + + + A ++EE+ G+ P+ Y +I
Sbjct: 733 KM-----SDSGWEPDLTTYNIRIHGYCTVRKINRAVMILEELISVGIVPNTVTYNTMINA 787
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ +L+ + ++ +TV N++LS + + + W QK+ + + F
Sbjct: 788 VCNV-ILDHAMILTAKLLKMAFVPNTVTVNVLLSQFCKQGMPEKAIFWGQKLSEIHLDFD 846
Query: 294 VRTY 297
T+
Sbjct: 847 ETTH 850
>gi|356558071|ref|XP_003547332.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Glycine max]
Length = 647
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+ A SM+ LC G+ EA +L+ ++ KG+ Y + GRL + + +
Sbjct: 403 KDACMSMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYE 462
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+M+ DG D N+++SS+G + V + +++++S V +YNS++N
Sbjct: 463 KMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENSDCKPDVISYNSLIN 516
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 55/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ + L + Q +L E+M+ G P F Y +I +GR G ++ + ++E+
Sbjct: 443 TVFTALGRLKQISHIHDLYEKMKQDGPPPDIFTYNILISSFGRAGRVDIAVKFFEELENS 502
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ D + N +++ G + ++ + ++M++ G+ V TY++++
Sbjct: 503 DCKPDVISYNSLINCLGKNGDVDEAHMRFKEMQEKGLNPDVVTYSTLI 550
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 173 ARLNQLVN--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+LN+L N S Y+ +Q + L ++G EA L M G + C+
Sbjct: 350 GKLNKLDNIVDISKKYINKQIYAYFVRTLSKVGHASEAHRLFCNMW--NFHDKGDKDACM 407
Query: 231 --IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ G + + ++N++ G DT+ N V ++ G ++S + +KMK
Sbjct: 408 SMLESLCSAGKMTEAIDLLNKIHEKGITTDTIMYNTVFTALGRLKQISHIHDLYEKMKQD 467
Query: 289 GIPFSVRTYNSVLNS 303
G P + TYN +++S
Sbjct: 468 GPPPDIFTYNILISS 482
>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
Length = 819
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF L ++ + F P L +I + K G+ +EAE+L + G ++
Sbjct: 339 AFDLVNKVKK---FGVAPSLFVYNALINSMCKDGKLDEAESL-FNNMGHKGLFPNDVT-- 392
Query: 152 YCNLIDSFCKHDSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y LIDSFCK RG D L ++ V ++VY S+ISG C++G+ A
Sbjct: 393 YSILIDSFCK----RGKLDVALHFLGKMTEVGIKATVY----PYSSLISGHCKLGKLRAA 444
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++L +EM GL+P+ Y +I GY + G L + R+ ++M G +T ++S
Sbjct: 445 KSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISG 504
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N ++ +M + + + TYN ++
Sbjct: 505 LCHANRMAEANKLFGEMVEWNVIPNEVTYNVLI 537
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+ CK + F+ +N+++ A+ +++ GL + G A +L
Sbjct: 288 YCTLVLGLCKVEE---FEAGEEMMNEMI--EFGFVPSEAAVSNLVDGLRKKGNIGSAFDL 342
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +++ G+ PS F Y +I + G L++ E + N M G + V ++++ S+
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCK 402
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + +L KM + GI +V Y+S+++
Sbjct: 403 RGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C++G+ EA ++ M G+ P Y IIY Y R G L++ ++ M + G
Sbjct: 683 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 742
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DTV N ++ EL++ M G+ + TYNS+++
Sbjct: 743 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 791
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 8/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
V+ ++ L K+G A L+ + K G V Y LI+S CK D K D+ +
Sbjct: 323 VSNLVDGLRKKGNIGSAFDLV-NKVKKFGVAPSLFV--YNALINSMCK-DGK--LDEAES 376
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
N + ++ +I C+ G+ A + + +M G++ + + Y +I G
Sbjct: 377 LFNNM--GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ +LG L + + ++M ++G + + V ++S Y EL +M GI +
Sbjct: 435 HCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPN 494
Query: 294 VRTYNSVLNS 303
T+ ++++
Sbjct: 495 TYTFTALISG 504
>gi|168039319|ref|XP_001772145.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676476|gb|EDQ62958.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 313
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 88/196 (44%), Gaps = 7/196 (3%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
NPK A++I+F + Q + A L E + K G ++ + Y LI S+ +++ +
Sbjct: 15 NPKEYAKMISFAGRINQPQLAADLFDE-MEKRGIKK--TAVSYNALIHSYGRNNEPQKAL 71
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ + V+ ++ ++IS MG E + + + P Y
Sbjct: 72 QLFEYMKVTVDCQPTLVT----YNTLISMYSRMGATEEMKKIFLDCTEAEFVPDRHTYNA 127
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+GY R G L +ME N++++ D + N ++ Y N + +M + L M+ G
Sbjct: 128 LIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLSSMQAVG 187
Query: 290 IPFSVRTYNSVLNSCS 305
IP + ++++ + S
Sbjct: 188 IPINTMALHALIMAYS 203
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R ++I G GQ +E E E++ K Y +I GY R ++ ME +++
Sbjct: 122 RHTYNALIWGYMRAGQLNEMEVTFNELQAKKFNADVITYNALIIGYARANAVDKMEVVLS 181
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
M++ G ++T+ + ++ +Y R+ ++ +KD+G TYN +++ +
Sbjct: 182 SMQAVGIPINTMALHALIMAYSRAGTYDRLAKTMEVVKDAGWMLQPATYNILISEYGKV 240
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/249 (19%), Positives = 118/249 (47%), Gaps = 22/249 (8%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ AE +L++L G ++ Y LI+ +C+ G T+ ++
Sbjct: 213 LCKDGKVSIAEE-VLQSLVNAGLVPTRVI--YNTLINGYCQTGELEGAFSTFGQM----- 264
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S + ++I+GLC+ + A++L+ EM+ G+ P+ + +I YGR G L
Sbjct: 265 KSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQL 324
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E ++++M+ +G + + V +++++ + ++ V L M + + + YN++
Sbjct: 325 EKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAI 384
Query: 301 LNSC------STIMSMLQDLNSNDFPLSI----LELTEVLNEEEVS----VVKELEDSSV 346
+++ +++ + SN SI L + + N+ ++S ++ L + +
Sbjct: 385 IDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRL 444
Query: 347 LDEAMKWDS 355
+ +A+ +++
Sbjct: 445 IPDAVSYNT 453
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +++++FCK+ + A L+ + + V Q ++I E G +A
Sbjct: 343 VVSYGSIVNAFCKNGK---IPEAVAILDDMFHKD--VLPNAQVYNAIIDAYVEHGPNDQA 397
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E+M+ G+ PS Y +I G + + E I+N + + D V N ++S+
Sbjct: 398 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 457
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + Q+M GI +VRTY+ +++
Sbjct: 458 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISG 492
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L++ CK D K + L LVN+ + R ++I+G C+ G+ A + +
Sbjct: 209 LLNGLCK-DGKVSIAEEV--LQSLVNAG--LVPTRVIYNTLINGYCQTGELEGAFSTFGQ 263
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ + ++P Y +I G + + + + ++ +M+ +G N ++ +YG +
Sbjct: 264 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 323
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + + L +M+++G+ +V +Y S++N+
Sbjct: 324 LEKCFIVLSEMQENGLKPNVVSYGSIVNA 352
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + + P GF Y + G R G + M + + +G
Sbjct: 139 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 198
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ +++L+ ++S LQ + ++G+ + YN+++N C T
Sbjct: 199 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 251
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G+ G+ +A + +EM + + P+ Y +I G+ + G LE R+ +QM G
Sbjct: 69 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 128
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
+ + + N++LS G E S ++ + QKM G +S+ N S M
Sbjct: 129 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 188
Query: 310 ML------QDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
L + D+ SIL L + + +VS+ +E+ S V
Sbjct: 189 SLFGKYLKNGVTIGDYTCSIL-LNGLCKDGKVSIAEEVLQSLV 230
>gi|297743996|emb|CBI36966.3| unnamed protein product [Vitis vinifera]
Length = 730
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 81/369 (21%), Positives = 147/369 (39%), Gaps = 96/369 (26%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
KQG+ EE + + E ++ R +L Y LID + SK G Y ++
Sbjct: 329 KQGKYEEVKRVFEEMKAE---RIFPNLLTYSTLIDVY----SKGGL---YQEAMEVFREF 378
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+K + ++I LC+ G A + ++EM +G+ P+ Y II +GR G++
Sbjct: 379 KKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPNVVTYNSIIDAFGRSGIV 438
Query: 241 EDMERIVNQMESD-GTRVDTVCSNMVLSSYGD---------------HNELSRMVLWLQK 284
ED ES+ G + D N ++ +G E+ ++ K
Sbjct: 439 ED------ATESEVGDKED----NQIIKIFGQLAAEKTCHAKKENRGRQEILCILAVFHK 488
Query: 285 MKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKEL--- 341
M + I +V T++++LN+CS NS + +LE + + + V L
Sbjct: 489 MHELDIKPNVVTFSAILNACSRC-------NSFEDASMLLEELRLFDNQVYGVAHGLLMG 541
Query: 342 -------EDSSVLDEA-----------------MKWDSGETK------------------ 359
+ S+ DE M W G+ +
Sbjct: 542 YGDNVWVQAQSLFDEVKQMDSSTASAFYNALTDMLWHFGQRRGAQLVVLEGKRRHVWENM 601
Query: 360 -----LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSV 414
LDLH M G+A ++ W+ +R+ E H +P ++++ G GKHS V G+ ++
Sbjct: 602 WSNSCLDLHLMSSGAARAMVHAWLLNIRS-IVFEGHELPQLLSILTGWGKHSKVVGDGAL 660
Query: 415 KAMVKKMMV 423
+ ++ ++
Sbjct: 661 RRAIEALLT 669
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G + G+ EA NL EM+ + Y ++ Y +LG E+ + +MES
Sbjct: 252 TVIDGYAKAGRLDEALNLFNEMKFASIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESS 311
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + D V N +L YG + + ++MK I ++ TY+++++
Sbjct: 312 GIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLID 360
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ +C+ GQ A ++ EM K + P+ Y +I GY + G L++ + N+M+
Sbjct: 217 TLLDAVCKGGQMDLAFQIMSEMPRKHIMPNVVTYSTVIDGYAKAGRLDEALNLFNEMKFA 276
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D V N +LS Y + ++M+ SGI TYN++L
Sbjct: 277 SIGLDRVSYNTLLSIYAKLGRFEEALNVCKEMESSGIKKDAVTYNALLGG 326
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 83/190 (43%), Gaps = 40/190 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID + K D+ N++ +S+ + R + +++S ++G+ EA
Sbjct: 247 VVTYSTVIDGYAKAGR---LDEALNLFNEM--KFASIGLDRVSYNTLLSIYAKLGRFEEA 301
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD--------------- 253
N+ +EM G++ Y ++ GYG+ G E+++R+ +M+++
Sbjct: 302 LNVCKEMESSGIKKDAVTYNALLGGYGKQGKYEEVKRVFEEMKAERIFPNLLTYSTLIDV 361
Query: 254 --------------------GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G + D V + ++ + + + V +L +M GI +
Sbjct: 362 YSKGGLYQEAMEVFREFKKAGLKADVVLYSALIDALCKNGLVESAVSFLDEMTKEGIRPN 421
Query: 294 VRTYNSVLNS 303
V TYNS++++
Sbjct: 422 VVTYNSIIDA 431
>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At2g02150-like [Vitis vinifera]
Length = 755
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC+ G A +L +M+ G P Y +I G+G+LGLL++ I QM+
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 320
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + + + +L +MK +G+ +V TY++ +++
Sbjct: 321 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDA 369
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 103/237 (43%), Gaps = 17/237 (7%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P I NAL + P+ AF ++ + + + N + I K+G +
Sbjct: 323 PDVITYNALINCFCKFERMPK----AFE-FLHEMKANGLKPNVVTYSTFIDAFCKEGMLQ 377
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA ++ + ++ E Y +LID+ CK + A +LV +K
Sbjct: 378 EAIKFFVD-MRRVALTPNEFT--YTSLIDANCKAGN-------LAEALKLVEEILQAGIK 427
Query: 189 RQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ +++ GLCE G+ EAE + M G+ P+ Y +++G+ + +E + I
Sbjct: 428 LNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDI 487
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M+ + D + +L + + L L + ++K+SGI + Y +++++
Sbjct: 488 LKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 544
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 73/157 (46%), Gaps = 10/157 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+ES N + ++ K GQ EA TL LE + LG E+ YC LID CK
Sbjct: 527 KESGINTNAVIYTTLMDAYFKSGQATEALTL-LEEMLDLGLIATEVT--YCALIDGLCKS 583
Query: 163 DSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
+ + R++++ + + +VY +++ GLC+ A+ L +EM KG+
Sbjct: 584 GLVQEAMHHFGRMSEIGLQPNVAVYT------ALVDGLCKNNCFEVAKKLFDEMLDKGMM 637
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
P Y +I G + G L++ + ++M G +D
Sbjct: 638 PDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELD 674
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 86/182 (47%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY-ARLNQLVNS 181
K G EA L+ E L + G + V+ Y L+D C+ + ++ + A LN V
Sbjct: 407 KAGNLAEALKLVEEIL-QAGIKLN--VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAP 463
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ Y +++ G + + A+++++EM+ K ++P Y I++G LE
Sbjct: 464 NQETYT------ALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLE 517
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + ++ +++ G + V ++ +Y + + + L++M D G+ + TY +++
Sbjct: 518 EAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALI 577
Query: 302 NS 303
+
Sbjct: 578 DG 579
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ +++ L ++G+ + ++M G++ S F Y +I + G LE
Sbjct: 216 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 275
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ QM+ G D V N ++ +G L + ++MKD+ V TYN+++N
Sbjct: 276 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALIN 333
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E Q N + ++ L K E A+ L E L K ++ + Y LID KH
Sbjct: 598 EIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDK---IAYTALIDGNMKHG 654
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ + + R+ ++ + + A ++I GL GQ +A NL++EM KG+ P
Sbjct: 655 NLQEALNLRDRMIEI-----GMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPD 709
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
Y C+I Y LG +++ + N+M G
Sbjct: 710 EVVYMCLIKKYYALGKVDEALELQNEMAKRG 740
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/108 (20%), Positives = 47/108 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ G EA + M GL+P+ Y ++ G + E +++ ++M
Sbjct: 575 ALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDK 634
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D + ++ H L + +M + G+ + Y +++
Sbjct: 635 GMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALI 682
>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 906
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L ++G+ ++A +L + L S + V+ Y +LI +F K K +D +
Sbjct: 488 LIDGLGRRGRVDDAYSLYEKMLD---SDQIPNVVVYTSLIQNFFKCGRK---EDGHKIYK 541
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V+ S + L S + + + G+ + L EE++ +GL P Y +I+G +
Sbjct: 542 EMVHRGCSPDL--MLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVK 599
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + ++ +M+ G +D + N V+ + ++ + L++MK G+ +V T
Sbjct: 600 AGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVT 659
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 660 YGSVVDGLAKI 670
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 165 KRGFD-DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
K GF +TY ++ +++ A ++I G C+ G+ +A L+EEM+ KGL+P+
Sbjct: 599 KAGFSRETYKLFYEM--KEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPT 656
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y ++ G ++ L++ + + +S G ++ V + ++ +G + L L+
Sbjct: 657 VVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILE 716
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
++ G+ + T+N +L++
Sbjct: 717 ELMQKGLTPNSYTWNCLLDA 736
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL-VNSS-SSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI CK R D+ +L +N S VY A +MI G G+ EA
Sbjct: 311 YTTLIGVLCK---ARRLDEAVELFEELDLNRSVPCVY----AYNTMIMGYGSAGKFDEAY 363
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+L+E + KG PS Y CI+ GR G +E+ RI ++M D + N+++
Sbjct: 364 SLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMRQDAAP-NLTTYNILIDML 422
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
EL + MK++G+ ++ T N +++
Sbjct: 423 CKAGELEAALKVQDTMKEAGLFPNIMTVNIMID 455
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
VL Y +ID FCK D Y L ++ V S++ GL ++ + EA
Sbjct: 622 VLAYNTVIDGFCKSGK---VDKAYQLLEEMKTKGLQPTVVTYG--SVVDGLAKIDRLDEA 676
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EE + G++ + Y +I G+G++G +++ I+ ++ G ++ N +L +
Sbjct: 677 YMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDA 736
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
E+ + Q MK+ + TY+ ++N I
Sbjct: 737 LVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMI 775
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + G E L EM+ +GL Y +I G+ + G ++ +++ +M++ G
Sbjct: 593 LIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG 652
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ V V+ + L + ++ K G+ +V Y+S+++ +
Sbjct: 653 LQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKV 705
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+GLC + + ++A +EM+ +GL+P+ Y +I G + G + + + ++ ++ G
Sbjct: 768 MINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASG 827
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ C N ++ N+ + ++ + G + +T +L++
Sbjct: 828 GVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDA 876
>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
Length = 621
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+ + EEA+ L L +L K G + E+V Y +LID CK D+ ++
Sbjct: 323 LIDALCKREKVEEAQ-LFLGSLVKKGVKVNEVV--YTSLIDGLCKTGKIDAADELMQKM- 378
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
S + S+I GLC + +A ++E+M KG++ S Y II R
Sbjct: 379 ----ISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
E ++I ++M + G D V + + SY + + + +M D G+ ++ T
Sbjct: 435 EVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVT 494
Query: 297 YNSVL 301
YN+++
Sbjct: 495 YNTLI 499
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T ++ L K G ER +VLF Y LI C G RL
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN----EGHLQCAFRLLH 306
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
L+ ++ V +I LC+ + EA+ + + KG++ + Y +I G +
Sbjct: 307 LMETNGLV-PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++ + ++ +M S+G D + ++ +LS+ L L+ M + GI S TY
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425
Query: 298 NSVLN 302
+++
Sbjct: 426 TIIID 430
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+M+ GLCE G+ EAE L+EE G EP+ Y +I GY G +E ++ M+ +
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS--------CS 305
+ ++ ++ R ++ +M ++G+ +V TY +++ C+
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301
Query: 306 TIMSMLQDLNS---NDFPLSIL 324
+ L + N ND+ S+L
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVL 323
>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
Length = 621
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+ + EEA+ L L +L K G + E+V Y +LID CK D+ ++
Sbjct: 323 LIDALCKREKVEEAQ-LFLGSLVKKGVKVNEVV--YTSLIDGLCKTGKIDAADELMQKM- 378
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
S + S+I GLC + +A ++E+M KG++ S Y II R
Sbjct: 379 ----ISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
E ++I ++M + G D V + + SY + + + +M D G+ ++ T
Sbjct: 435 EVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVT 494
Query: 297 YNSVL 301
YN+++
Sbjct: 495 YNTLI 499
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T ++ L K G ER +VLF Y LI C G RL
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNE----GHLQCAFRLLH 306
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
L+ ++ V +I LC+ + EA+ + + KG++ + Y +I G +
Sbjct: 307 LMETNGLV-PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++ + ++ +M S+G D + ++ +LS+ L L+ M + GI S TY
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425
Query: 298 NSVLN 302
+++
Sbjct: 426 TIIID 430
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+M+ GLCE G+ EAE L+EE G EP+ Y +I GY G +E ++ M+ +
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS--------CS 305
+ ++ ++ R ++ +M ++G+ +V TY +++ C+
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301
Query: 306 TIMSMLQDLNS---NDFPLSIL 324
+ L + N ND+ S+L
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVL 323
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 12/189 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I FL K + EEA L ++L++ G V+ Y LID +CK D+
Sbjct: 368 FIDFLCKSNRVEEARRL-FDSLTEEGVSAN--VIMYSVLIDGYCKVGK---VDEAGCLFE 421
Query: 177 QLV--NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+++ N S + Y ++I GLC G EA +L ++M GL+P+ + + +I
Sbjct: 422 KMLSKNCSPNAY----TFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRM 477
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G +D + + +M S G + N + Y ++ + +MK+ G+P
Sbjct: 478 LKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDD 537
Query: 295 RTYNSVLNS 303
TY S++ +
Sbjct: 538 FTYTSLIKA 546
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 165 KRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
K+G FDD + L ++++S + + I C G+ EAE+++ +M+ +G+ P
Sbjct: 479 KQGDFDDAHKCLQKMMSSGEKPVAR--TYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPD 536
Query: 224 GFEYKCIIYGYGRLGL 239
F Y +I YG+LGL
Sbjct: 537 DFTYTSLIKAYGKLGL 552
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+G C G A L+ M+ +GL P Y C I + +E+ R+ + + +
Sbjct: 332 SLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE 391
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + + ++++ Y ++ +KM + T+N++++ CS
Sbjct: 392 GVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSA 445
>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
Length = 825
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S ++ LC+ G+ EA ++ + M +KG +P Y +++GY G + M+ + N M +
Sbjct: 334 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE 393
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N ++++Y + + +L + M G+ + T+++V+++
Sbjct: 394 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 443
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 18/260 (6%)
Query: 48 LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107
L + RD+ A +R +++ L+AL+ P + +LA L+ R+ +
Sbjct: 134 LLLRRDAPAPARGLNEL---------LSALARA-PPSAACRDVPALAVELFKRMDRCACP 183
Query: 108 QWNPKLVA-EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P + I+ ++ +R + + L + G V Y LID F K
Sbjct: 184 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPD--VFSYNALIDGFSKEGEVD 241
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D + ++ + + S+I+GLC+ + +AE ++ +M G+ P+
Sbjct: 242 KAHDLFYKMEE-----QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 296
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y C+I+GY G+ ++ R+ +M S D N +++ H + M
Sbjct: 297 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 356
Query: 287 DSGIPFSVRTYNSVLNSCST 306
G V +Y ++L+ +T
Sbjct: 357 LKGPKPDVISYGALLHGYAT 376
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A+ LI + LSK + F+ ++I++ CK D ++ ++++ +
Sbjct: 487 KAKELISDMLSK--GIPPPCIKFFTSIINNLCKEGRVAEGKDV---VDLIIHTGQRPNL- 540
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
S++ G C +G EA L++ M G+EP + Y ++ GY + G ++D +
Sbjct: 541 -ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFR 599
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NS 303
M + +V N++L +M +SG+ S+ TY +VL N+
Sbjct: 600 DMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNN 659
Query: 304 CSTIMSM-LQDLNSNDFPLSILELTEVL 330
C+ +M L+ L S + IL V+
Sbjct: 660 CTDEANMLLEKLFSMNVKFDILTFNIVI 687
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +EA I +++ G + V+ Y L+ + G D+ + N +V
Sbjct: 339 LCKHGRIKEARD-IFDSMVLKGPKPD--VISYGALLHGYATAGCIAGMDNLF---NVMV- 391
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V R ++I+ +G ++ + E+M +G+ P + +I + RLG L
Sbjct: 392 -CEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRL 450
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNS 299
+D N M G DT + ++ + +L + + M GIP ++ + S
Sbjct: 451 DDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTS 510
Query: 300 VLNS 303
++N+
Sbjct: 511 IINN 514
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+ + EEA+ L L +L K G + E+V Y +LID CK D+ ++
Sbjct: 323 LIDALCKREKVEEAQ-LFLGSLVKKGVKVNEVV--YTSLIDGLCKTGKIDAADELMQKM- 378
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
S + S+I GLC + +A ++E+M KG++ S Y II R
Sbjct: 379 ----ISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVR 434
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
E ++I ++M + G D V + + SY + + + +M D G+ ++ T
Sbjct: 435 EVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVT 494
Query: 297 YNSVL 301
YN+++
Sbjct: 495 YNTLI 499
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 19/185 (10%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T ++ L K G ER +VLF Y LI C G RL
Sbjct: 251 TELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCN----EGHLQCAFRLLH 306
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
L+ ++ V +I LC+ + EA+ + + KG++ + Y +I G +
Sbjct: 307 LMETNGLV-PNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKT 365
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++ + ++ +M S+G D + ++ +LS+ L L+ M + GI S TY
Sbjct: 366 GKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTY 425
Query: 298 NSVLN 302
+++
Sbjct: 426 TIIID 430
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+M+ GLCE G+ EAE L+EE G EP+ Y +I GY G +E ++ M+ +
Sbjct: 182 TMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGN 241
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS--------CS 305
+ ++ ++ R ++ +M ++G+ +V TY +++ C+
Sbjct: 242 RCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCA 301
Query: 306 TIMSMLQDLNS---NDFPLSIL 324
+ L + N ND+ S+L
Sbjct: 302 FRLLHLMETNGLVPNDWTFSVL 323
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 7/183 (3%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L + G+ +EA L E +S+ L Y LI+ FC+ RG D + + +
Sbjct: 373 LCRNGRVKEAFELFEEMVSRDHIVPDPLT--YNVLINEFCR----RGKPDRARNVIEFM- 425
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S+ Y +++ GLC++G+ +A+ ++ EM+ GL+P Y +I R G +
Sbjct: 426 KSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQI 485
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ ++ +++ + + DTV N++L + + L+K+ G+ + +Y V
Sbjct: 486 GEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYRIV 545
Query: 301 LNS 303
LNS
Sbjct: 546 LNS 548
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 88/195 (45%), Gaps = 10/195 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV II L K G ++ + L LE + S + V+ Y ++I C H + +
Sbjct: 236 PNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPD---VVAYSSIIHGMC-HTGR--W 289
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ N++V+ V+ +I LC+ G+ EA +L++ M +G P F Y
Sbjct: 290 EGAKGLFNEMVDEG--VHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYN 347
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I G+ G ++D + MES G D V N++++ Y + ++M
Sbjct: 348 TLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCK 407
Query: 289 GIPFSVRTYNSVLNS 303
I +V TYN++L
Sbjct: 408 EIMPTVITYNTLLTG 422
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 50/98 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I GLC+ + A L + +GLEP+ Y +I+G + G LE+ + +
Sbjct: 484 QIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLG 543
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
ME G + V N ++ + ++E+ ++V LQ+M +
Sbjct: 544 MEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAE 581
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 79/184 (42%), Gaps = 11/184 (5%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV---NS 181
G R T +L + ++G R V+ Y L++ C G +L++ + N
Sbjct: 175 GSRISEATGLLRKMVRMGYRPN--VVTYGTLLNGLCM----TGNTMLAVKLHEEMLNGNG 228
Query: 182 SSSVYVKRQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
V +K + ++I LC+ G + + L EM+ +G+ P Y II+G G
Sbjct: 229 GFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGR 288
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
E + + N+M +G + V N+++ + ++ L+ M G TYN+
Sbjct: 289 WEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNT 348
Query: 300 VLNS 303
+++
Sbjct: 349 LIDG 352
>gi|224576653|gb|ACN57000.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.7 bits (99), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 101
>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Cucumis sativus]
Length = 590
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 84/181 (46%), Gaps = 8/181 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G +A L+ E + +G + ++ Y LID +CK + +N+
Sbjct: 373 LCKVGDVNKARKLVDE-MKMVGMKPDKIT--YTTLIDGYCKEGDLESAMEIRKGMNE--- 426
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V + A ++ISG C G+ +AE + EM G++P Y +I GY + G +
Sbjct: 427 --EGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNV 484
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ +++ +M+ +G + + N++++ ++ + L+ M + G+ TYN +
Sbjct: 485 KMGFKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNIL 544
Query: 301 L 301
L
Sbjct: 545 L 545
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 91/187 (48%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ + AE L E + + G R + + LID ++ S+R D +
Sbjct: 299 LIHGLCKEGRLDVAEQLFDE-MQQRGLRPNGIT--FTALIDG--QYRSRR-MDSAMNTYH 352
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q++ + V ++++GLC++G ++A L++EM++ G++P Y +I GY +
Sbjct: 353 QML--TMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCK 410
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G LE I M +G +D V ++S + + L++M ++G+ T
Sbjct: 411 EGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDAT 470
Query: 297 YNSVLNS 303
Y V++
Sbjct: 471 YTMVIDG 477
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 9/157 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPH 206
++ Y L++ CK D AR +LV+ V +K + ++I G C+ G
Sbjct: 363 LVMYNTLLNGLCKVG-----DVNKAR--KLVDEMKMVGMKPDKITYTTLIDGYCKEGDLE 415
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A + + M +G+ + +I G+ R G + D ER + +M G + D MV+
Sbjct: 416 SAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVI 475
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + L++M+ +G V TYN ++N
Sbjct: 476 DGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNG 512
Score = 45.4 bits (106), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V +Y LI+ FCK S R + + + ++V + ++I+GLC+ E
Sbjct: 223 VQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTV-----SFNTLINGLCKSRNLDEG 277
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + M + P F Y +I+G + G L+ E++ ++M+ G R + + ++
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M G+ + YN++LN
Sbjct: 338 QYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 16/171 (9%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
+ EE N A I F + G+ +AE + E + + G + + Y +ID +C
Sbjct: 424 MNEEGVVLDNVAFTALISGFC-RDGRVRDAERTLRE-MVEAGMKPDDAT--YTMVIDGYC 479
Query: 161 KHDS-KRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
K + K GF L ++ +N + L ++GLC+ GQ A L+E M
Sbjct: 480 KKGNVKMGF----KLLKEMQINGHKPGVITYNVL---MNGLCKQGQMKNANMLLEAMLNL 532
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
G+ P Y ++ G+ + G ED+ ++ N+ G VD ++S Y
Sbjct: 533 GVTPDDITYNILLEGHCKNGKAEDLLKLRNE---KGLIVDYAYYTSLVSEY 580
>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g13630-like [Cucumis sativus]
Length = 830
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE--IIAFLDKQGQ 126
P FI + L H L + R A+ LY ++ + F P A+ ++ L K G
Sbjct: 444 PDFIVYSILIHGLCKEGFVQR----AYQLYEQMRLKRKF---PHHFAQRAVLLGLFKNGN 496
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186
EA +T +++ E V+ Y +ID + + D Y ++ + + S V
Sbjct: 497 ISEARNY-FDTWTRMDLMED--VVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVV- 552
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++I+G C G EA ++E +R+KGL PS Y ++ Y +G +++M
Sbjct: 553 ----TFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVL 301
+++ME++ V +++ N++ + L+ M G +P SV TYN+++
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSV-TYNTII 663
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP LV +I + G EEA L ETLS+ G + V+FY L+ CK
Sbjct: 373 NPDLVTYTTLICGHCQMGNIEEALKLRQETLSR-GFKLN--VIFYNMLLSCLCKVGRIEE 429
Query: 168 FDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + L + VY +I GLC+ G A L E+MR+K P F
Sbjct: 430 ALTLFDEMETLRLEPDFIVY------SILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFA 483
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G + G + + + D V N+++ Y + ++ + KM
Sbjct: 484 QRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMI 543
Query: 287 DSGIPFSVRTYNSVLNS 303
+ GI SV T+N+++N
Sbjct: 544 ERGITPSVVTFNTLING 560
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 79/189 (41%), Gaps = 40/189 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++++C+ + + + + L+++ +++V +I GLC + HE+
Sbjct: 586 VVTYTTLMNAYCEVGNMQ---EMFHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHES 640
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGR-------------------------------- 236
L+E M KGL P Y II + +
Sbjct: 641 LQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINA 700
Query: 237 ---LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G L+D++R+V +E + V ++ ++ ++S+ + + +M G S
Sbjct: 701 LCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVIS 760
Query: 294 VRTYNSVLN 302
+R Y++V+N
Sbjct: 761 IRDYSAVIN 769
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G EA ++M G+EP Y + G+ LGL+ ++V +M G
Sbjct: 312 LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQG 371
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V ++ + + + Q+ G +V YN +L SC
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL-SC 420
>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Cucumis
sativus]
Length = 830
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 19/236 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE--IIAFLDKQGQ 126
P FI + L H L + R A+ LY ++ + F P A+ ++ L K G
Sbjct: 444 PDFIVYSILIHGLCKEGFVQR----AYQLYEQMRLKRKF---PHHFAQRAVLLGLFKNGN 496
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186
EA +T +++ E V+ Y +ID + + D Y ++ + + S V
Sbjct: 497 ISEARNY-FDTWTRMDLMED--VVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVV- 552
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++I+G C G EA ++E +R+KGL PS Y ++ Y +G +++M
Sbjct: 553 ----TFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHF 608
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVL 301
+++ME++ V +++ N++ + L+ M G +P SV TYN+++
Sbjct: 609 LHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSV-TYNTII 663
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 84/197 (42%), Gaps = 12/197 (6%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP LV +I + G EEA L ETLS+ G + V+FY L+ CK
Sbjct: 373 NPDLVTYTTLICGHCQMGNIEEALKLRQETLSR-GFKLN--VIFYNMLLSCLCKVGRIEE 429
Query: 168 FDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + L + VY +I GLC+ G A L E+MR+K P F
Sbjct: 430 ALTLFDEMETLRLEPDFIVY------SILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFA 483
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++ G + G + + + D V N+++ Y + ++ + KM
Sbjct: 484 QRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMI 543
Query: 287 DSGIPFSVRTYNSVLNS 303
+ GI SV T+N+++N
Sbjct: 544 ERGITPSVVTFNTLING 560
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/189 (19%), Positives = 78/189 (41%), Gaps = 40/189 (21%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L++++C+ + + + + L+++ +++V +I GLC + HE+
Sbjct: 586 VVTYTTLMNAYCEVGNMQ---EMFHFLHEM--EANAVVPTHVTYTVLIKGLCRQNKMHES 640
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGR-------------------------------- 236
L+E M KGL P Y II + +
Sbjct: 641 LQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINA 700
Query: 237 ---LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G L+D++R+V +E + ++ ++ ++S+ + + +M G S
Sbjct: 701 LCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVIS 760
Query: 294 VRTYNSVLN 302
+R Y++V+N
Sbjct: 761 IRDYSAVIN 769
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G EA ++M G+EP Y + G+ LGL+ ++V +M G
Sbjct: 312 LLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQG 371
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V ++ + + + Q+ G +V YN +L SC
Sbjct: 372 LNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL-SC 420
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 62/111 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC+ G+ +EA +L+ +M+ KGL P+ + ++ G RLG L++ ++ M +
Sbjct: 237 TILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQN 296
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D N+++S + ++ + ++M++ + V TYN+++N C
Sbjct: 297 SVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGC 347
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+GLC+MG+ ++A + ++E+ GL P Y II+GY + G +E + N+M
Sbjct: 517 SMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEK 576
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMV----LWLQKMKDSGIPFSVRTYNSVL 301
+ D V N +L L + + W+ K KD +YN+++
Sbjct: 577 NFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKD----VDAVSYNTII 624
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 89/189 (47%), Gaps = 16/189 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERE----LVLFYCNLIDSFCKHDSKRGFDDTY 172
I+ L K+G+ EA L+L+ +K R LV+ C L G+
Sbjct: 238 ILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRL-----------GWLKEA 286
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
A + +L+ S +SV MISG C+ G+ EA L EEM L P Y +I
Sbjct: 287 ANVIELM-SQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLIN 345
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G E+ +++ +ME G + ++V N+++ + ++ + ++KM++SG
Sbjct: 346 GCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLP 405
Query: 293 SVRTYNSVL 301
+ TYN+++
Sbjct: 406 DIVTYNTLI 414
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G E G E LIEEM +G++P+ Y ++ + + G ++++++ V +ME
Sbjct: 342 TLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEES 401
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V N ++S + ++ + +M G+ T N++L +
Sbjct: 402 GCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRA 451
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 5/128 (3%)
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
N S +++ + L I G+PH+A + M+ G++P+ ++ R
Sbjct: 115 NPVSCLHISKPLLDISIGAYVACGRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPS 174
Query: 240 LEDMERIVNQMESD----GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ R+ + +D G +++T N+++ N + L KM+D G P
Sbjct: 175 SHSI-RLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRFGEAIRVLGKMRDYGCPPDNI 233
Query: 296 TYNSVLNS 303
TYN++L+
Sbjct: 234 TYNTILDG 241
>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900 [Vitis vinifera]
Length = 900
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/213 (27%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF L ++ + F P L +I + K G+ +EAE+L + G ++
Sbjct: 339 AFDLVNKVKK---FGVAPSLFVYNALINSMCKDGKLDEAESL-FNNMGHKGLFPNDVT-- 392
Query: 152 YCNLIDSFCKHDSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y LIDSFCK RG D L ++ V ++VY S+ISG C++G+ A
Sbjct: 393 YSILIDSFCK----RGKLDVALHFLGKMTEVGIKATVY----PYSSLISGHCKLGKLRAA 444
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++L +EM GL+P+ Y +I GY + G L + R+ ++M G +T ++S
Sbjct: 445 KSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISG 504
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N ++ +M + + + TYN ++
Sbjct: 505 LCHANRMAEANKLFGEMVEWNVIPNEVTYNVLI 537
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC L+ CK + F+ +N+++ A+ +++ GL + G A +L
Sbjct: 288 YCTLVLGLCKVEE---FEAGEEMMNEMI--EFGFVPSEAAVSNLVDGLRKKGNIGSAFDL 342
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ +++ G+ PS F Y +I + G L++ E + N M G + V ++++ S+
Sbjct: 343 VNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCK 402
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + +L KM + GI +V Y+S+++
Sbjct: 403 RGKLDVALHFLGKMTEVGIKATVYPYSSLISG 434
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C++G+ EA ++ M G+ P Y IIY Y R G L++ ++ M + G
Sbjct: 780 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 839
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
DTV N ++ EL++ M G+ + TYNS+++
Sbjct: 840 VNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHG 888
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E F + V+ ++ L K+G A L+ + K G V Y LI+S CK D
Sbjct: 313 EFGFVPSEAAVSNLVDGLRKKGNIGSAFDLV-NKVKKFGVAPSLFV--YNALINSMCK-D 368
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
K D+ + N + ++ +I C+ G+ A + + +M G++ +
Sbjct: 369 GK--LDEAESLFNNM--GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKAT 424
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ Y +I G+ +LG L + + ++M ++G + + V ++S Y EL
Sbjct: 425 VYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYH 484
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M GI + T+ ++++
Sbjct: 485 EMTGKGISPNTYTFTALISG 504
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 51/107 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G A L++EM KGL P + Y+ +I G G + + +N ++ +
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ +C + +L Y L + ++M G+ + Y+ ++
Sbjct: 596 QKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLI 642
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI+ CK ++ R F+ L+++V + + +ISGLC G+ EA
Sbjct: 533 YNVLIEGHCKEGNTVRAFE----LLDEMV--EKGLVPDTYTYRPLISGLCSTGRVSEARE 586
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ +++ + + + + +++GY + G L+D +M G +D VC ++++
Sbjct: 587 FMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGIL 646
Query: 271 DHNELSRMVLWLQKMKDSGI 290
+ ++ L++M D G+
Sbjct: 647 RQQDRRSIIDLLKQMHDQGL 666
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 83/193 (43%), Gaps = 7/193 (3%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P LV + LD G+ + ILE L ++ S+ E F C+ + S C + D
Sbjct: 248 DPTLVTYNV-MLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCSTVISACGREGM--LD 304
Query: 170 DTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ L +L +N V SM+ + G EA ++++EM P Y
Sbjct: 305 EARKFLAELKLNGYKPGTV---MYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSITYN 361
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ Y R G L++ +++ M S G + + V+ +YG + KMKD
Sbjct: 362 ELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSKMKDL 421
Query: 289 GIPFSVRTYNSVL 301
G +V TYNSVL
Sbjct: 422 GCAPNVYTYNSVL 434
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G EA ++ EM KG++P+ Y + GY + L ++ ++ M
Sbjct: 712 TVIKGFCRKGLMQEAIRVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEH 771
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
R + +++ Y + + ++ K+K+ I F ++ L SC
Sbjct: 772 NCRPSELTYKILVDGYCKAGKHEEAMDFVTKIKEIDISFDDKSVKR-LGSC 821
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 59/113 (52%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I + G+ +A L +M+ G P+ + Y ++ G+ ED+ +++ +M+ +
Sbjct: 397 TVIDAYGKAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLN 456
Query: 254 GTRVDTVCSNMVL---SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N +L S G HN ++++ L++MK+ G T+N++++S
Sbjct: 457 GCAPNRATWNTMLAVCSEEGKHNYVNKV---LREMKNCGFEPDKDTFNTLISS 506
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 86/189 (45%), Gaps = 15/189 (7%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S ++ + Q ++ M+ L Q A L + + V+ Y I++ Y R G
Sbjct: 173 SDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHAYARSGKY 232
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE-LSRMVLWLQKMKDSGIPFSVRTYNS 299
+ + ++ME G V N++L YG R++ L +M+ G+ F T ++
Sbjct: 233 KRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKGLEFDEFTCST 292
Query: 300 VLNSCS------TIMSMLQDLNSNDF-PLSIL--ELTEVLNE-----EEVSVVKELEDSS 345
V+++C L +L N + P +++ + +V + E +S++KE+ED++
Sbjct: 293 VISACGREGMLDEARKFLAELKLNGYKPGTVMYNSMLQVFGKAGIYTEALSILKEMEDNN 352
Query: 346 VLDEAMKWD 354
+++ ++
Sbjct: 353 CPPDSITYN 361
>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
Length = 948
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 54/107 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI GLC+ G A ++EM KG EP+ Y +I G+ + G E+ ++VN M + G
Sbjct: 378 MIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKG 437
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++TV N ++ + ++ + +M G + T+NS++
Sbjct: 438 LSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLI 484
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 73/159 (45%), Gaps = 6/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID FCK F++ +N + S+ + + +I LC+ G+ +A
Sbjct: 407 VITYTILIDGFCKQGH---FEEASKVVNSM--SAKGLSLNTVGYNCLIGALCKDGKIQDA 461
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ EM KG +P + + +IYG + +E+ + M +G +TV N ++ +
Sbjct: 462 LQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHA 521
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ + + + +M+ G P TYN ++ + C T
Sbjct: 522 FLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKT 560
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 7/179 (3%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ EEA+ L+ + + G + +ID CK K L+++V
Sbjct: 350 GRFEEAKDLLYKNMVIAGFEPDAFT--FNIMIDGLCK---KGYLVSALEFLDEMVKKGFE 404
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V + +I G C+ G EA ++ M KGL + Y C+I + G ++D
Sbjct: 405 PNVITYTI--LIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDAL 462
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ +M S G + D N ++ ++++ + + M G+ + TYN+++++
Sbjct: 463 QMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHA 521
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN LI+SFC+ +D L ++ + + S+I+GLC+MG+ EA NL
Sbjct: 585 CNILINSFCRTGK---VNDALQFLRDMIQRGLTPDI--VTYNSLINGLCKMGRFQEALNL 639
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ KG+ P Y +I Y GL D +++ + S+G + + +++++ +
Sbjct: 640 FNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVK 699
Query: 272 HN 273
+N
Sbjct: 700 NN 701
>gi|255685732|gb|ACU28355.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ + V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKTGS---VEDAIRLLHRMIDEGFNPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G ++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDXAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +++
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISG 171
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 50/97 (51%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E + E M KG +P+ Y +I GY + G +ED R++++M +G D V ++V+
Sbjct: 4 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVV 63
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + + + Q + +G+ + Y+S+++
Sbjct: 64 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 100
>gi|255685746|gb|ACU28362.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ + V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKTGS---VEDAIRLLHRMIDEGFNPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G ++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKAGRVDXAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +++
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISG 171
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+E + E M KG +P+ Y +I GY + G +ED R++++M +G D V ++V
Sbjct: 3 YEGYAVFENMIRKGSKPNVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVV 62
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + + + Q + +G+ + Y+S+++
Sbjct: 63 VNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 100
>gi|224101979|ref|XP_002312498.1| predicted protein [Populus trichocarpa]
gi|222852318|gb|EEE89865.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 97/217 (44%), Gaps = 8/217 (3%)
Query: 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL 148
R LA LY E+ + +P+ +++ ++GQ E+ ++ E + +
Sbjct: 117 REVKLAEELYKEAQEKRMLK-DPETFLKLVLIYMEEGQMEKTVEIVKEMKGTAKLKVSDC 175
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ +C +++ F K +RGFD +L + S+I+ C +G +A
Sbjct: 176 I--FCAVVNGFSK---RRGFDAAVKVYEELKYDGCEP--GQVTYASVINAYCRVGLYSKA 228
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E + EM KG + Y II YG+ G D R+V +M+ G + +T N ++
Sbjct: 229 EVVFFEMEAKGFDKCVVAYSSIISMYGKTGRPRDAMRLVAKMKLKGCQPNTWIYNSLVDM 288
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+G +L R+ ++MK + TY S++++ S
Sbjct: 289 HGRAKDLRRVEKLWKEMKRRKVAPDKVTYTSIISAYS 325
>gi|224154752|ref|XP_002337512.1| predicted protein [Populus trichocarpa]
gi|222839496|gb|EEE77833.1| predicted protein [Populus trichocarpa]
Length = 64
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/48 (62%), Positives = 36/48 (75%), Gaps = 1/48 (2%)
Query: 51 TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT-HPRLSSLAFPL 97
TRD+ A +RLI KFVASSP+ L+ALSHLLSPD+T HP L L P+
Sbjct: 6 TRDTSATNRLIKKFVASSPKSTTLDALSHLLSPDSTHHPLLYLLTLPV 53
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 117/247 (47%), Gaps = 22/247 (8%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ AE +L++L G ++ Y LI+ +C+ G T+ ++ S
Sbjct: 167 KDGKVSIAEE-VLQSLVNAGLVPTRVI--YNTLINGYCQTGELEGAFSTFGQM-----KS 218
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ ++I+GLC+ + A++L+ EM+ G+ P+ + +I YGR G LE
Sbjct: 219 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 278
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++++M+ +G + + V +++++ + ++ V L M + + + YN++++
Sbjct: 279 CFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIID 338
Query: 303 SC------STIMSMLQDLNSNDFPLSI----LELTEVLNEEEVS----VVKELEDSSVLD 348
+ +++ + SN SI L + + N+ ++S ++ L + ++
Sbjct: 339 AYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398
Query: 349 EAMKWDS 355
+A+ +++
Sbjct: 399 DAVSYNT 405
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 72/153 (47%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +++++FCK+ + A L+ + + V Q ++I E G +A
Sbjct: 295 VVSYGSIVNAFCKNGK---IPEAVAILDDMFHKD--VLPNAQVYNAIIDAYVEHGPNDQA 349
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+E+M+ G+ PS Y +I G + + E I+N + + D V N ++S+
Sbjct: 350 FILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISA 409
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + Q+M GI +VRTY+ ++
Sbjct: 410 CCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLI 442
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L++ CK D K + L LVN+ + R ++I+G C+ G+ A + +
Sbjct: 161 LLNGLCK-DGKVSIAEEV--LQSLVNAG--LVPTRVIYNTLINGYCQTGELEGAFSTFGQ 215
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ + ++P Y +I G + + + + ++ +M+ +G N ++ +YG +
Sbjct: 216 MKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQ 275
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + + L +M+++G+ +V +Y S++N+
Sbjct: 276 LEKCFIVLSEMQENGLKPNVVSYGSIVNA 304
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SGLC G+ E L++EM + + P GF Y + G R G + M + + +G
Sbjct: 91 LLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKYLKNG 150
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ +++L+ ++S LQ + ++G+ + YN+++N C T
Sbjct: 151 VTIGDYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQT 203
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 12/163 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G+ G+ +A + +EM + + P+ Y +I G+ + G LE R+ +QM G
Sbjct: 21 VIAGMWRAGRGGDAVEVFDEMTERAVLPNHITYNTMIDGHIKGGDLEAGFRLRDQMVCHG 80
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
+ + + N++LS G E S ++ + QKM G +S+ N S M
Sbjct: 81 LKPNAITYNVLLSGLCRAGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAML 140
Query: 310 ML------QDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
L + D+ SIL L + + +VS+ +E+ S V
Sbjct: 141 SLFGKYLKNGVTIGDYTCSIL-LNGLCKDGKVSIAEEVLQSLV 182
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 12/196 (6%)
Query: 111 PKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L++ +I L ++G+ +E + +L +++ G E+ Y LI +CK +
Sbjct: 273 PNLISYNVVINGLCREGRMKEV-SFVLTEMNRRGYSLDEVT--YNTLIKGYCKEGNFHQA 329
Query: 169 DDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+A L + S Y S+I +C+ G + A +++MRV+GL P+ Y
Sbjct: 330 LVMHAEMLRHGLTPSVITYT------SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++ G+ + G + + R++ +M +G V N +++ + ++ + L+ MK+
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 288 SGIPFSVRTYNSVLNS 303
G+ V +Y++VL+
Sbjct: 444 KGLSPDVVSYSTVLSG 459
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++ + + L+ M +KGLEP+ Y +I G R G ++++ ++ +M
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V N ++ Y + ++ +M G+ SV TY S+++S
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y L+D F S++G+ ++ Y L ++ ++ S V ++I+G C G+ +A
Sbjct: 383 YTTLVDGF----SQKGYMNEAYRVLREMNDNGFSPSV--VTYNALINGHCVTGKMEDAIA 436
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E+M+ KGL P Y ++ G+ R +++ R+ +M G + DT+ + ++ +
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++M G+P TY +++N+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G CE + EA +L EEM GL P F Y +I Y G LE ++ N+M
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 254 GTRVDTVCSNMVLSSYGDHN---ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G D V +++++ + E R++L L + +P V TY++++ +CS I
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKL--FYEESVPSDV-TYHTLIENCSNI 603
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK R DD + L + + + + +I+GLC G+ E
Sbjct: 240 VVTYNTLIDGYCK---LRKIDDGFKLLRSM--ALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G Y +I GY + G + +M G + ++ S
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM------LQDLNSNDFPLS 322
++R + +L +M+ G+ + RTY ++++ S M L+++N N F S
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAMK 352
++ ++N V ++ED+ + E MK
Sbjct: 415 VVTYNALINGH--CVTGKMEDAIAVLEDMK 442
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G A L ++M KG P+ Y +I GY +L ++D +++ M G
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + N+V++ + + L +M G TYN+++
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L+KQ + EA+ L+L+ LFY + S D TY +
Sbjct: 561 LINGLNKQSRTREAKRLLLK-------------LFYEESVPS----------DVTY---H 594
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L+ + S++ K ++ S+I G C G EA+ + E M K +P G Y +I+G+ R
Sbjct: 595 TLIENCSNIEFK--SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWL 282
G + + +M G + TV ++ + G NEL+ +++ +
Sbjct: 653 AGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AEN+ +EM + P+ F Y +I G+ G ++ + ++ME+ G + V N ++
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ L+ M G+ ++ +YN V+N
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ + EA ++ EM KGL PS Y +I GY + G+++D I++ MES+
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+T N ++ ++ + + L KM + + S+ TYNS+++
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK DD + L+ + S+S + +I GLC+ + H+A
Sbjct: 369 VVTYNALIDGYCKEGM---IDDAFEILDLM--ESNSCGPNTRTYNELICGLCKKRKVHKA 423
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG---------TRVDT 259
L+ +M + L PS Y +I+G ++ LE R+++ M +G +DT
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483
Query: 260 VC 261
+C
Sbjct: 484 LC 485
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LI C++ +G D+ Y L+ + ++I GLCE G+ +EA L
Sbjct: 232 YTSLILGHCRN---KGVDNAYEVF--LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M P+ Y +IY G + + N+M+ G + +++
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++ L +M + G+ SV TYN++++
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I L G+ EA NL EM+ KG EP+ Y +I G + +++ +++++M G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V N ++ Y + L M+ + + RTYN ++
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSKR 166
N + E+I L K+ + +A L+ + L ER+L ++ Y +LI CK +
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKML------ERKLSPSLITYNSLIHGQCKVND-- 454
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ Y RL L+N + V + I LC+ G+ EA L + ++ KG++ +
Sbjct: 455 -LESAY-RLLSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I GY ++G ++ ++ +M +D ++ N+++ ++ + KM
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 287 DSGIPFSVRTY 297
G+ +V TY
Sbjct: 572 TMGVKPTVVTY 582
>gi|168030898|ref|XP_001767959.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680801|gb|EDQ67234.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 957
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V +SS V A MI G+P EA +L +EM KG +P+ Y ++ + R G
Sbjct: 709 VLNSSEVGADEIAYSQMIHCYGCAGRPKEAADLFQEMETKGFKPNEVIYNNLLDAFARAG 768
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L + +++ M G +V +++S+YG + + L M+D G+ R YN
Sbjct: 769 LFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDRGLYPDCRHYN 828
Query: 299 SVLNSCSTI 307
V+ + +
Sbjct: 829 EVIRAYGNV 837
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VN 180
G+ +EA L E +K G + E++ Y NL+D+F + F + L+ +
Sbjct: 733 GRPKEAADLFQEMETK-GFKPNEVI--YNNLLDAFARAGL---FAEARLLLSDMRRKGCP 786
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SS Y+ ++S G+P +AE+L+ M+ +GL P Y +I YG +G L
Sbjct: 787 PSSVTYL------LLMSAYGSKGKPADAESLLHLMQDRGLYPDCRHYNEVIRAYGNVGKL 840
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
D RI ++++ G ++ C ++ + DH + + W Q KD F+V
Sbjct: 841 SDACRIFYELKTVGIGLELGCFRTLVKIHLDHGQFEQG--W-QIYKDLSQSFTV 891
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G EA L+ +MR KG PS Y ++ YG G D E +++ M+
Sbjct: 759 NLLDAFARAGLFAEARLLLSDMRRKGCPPSSVTYLLLMSAYGSKGKPADAESLLHLMQDR 818
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D N V+ +YG+ +LS ++K GI + + +++
Sbjct: 819 GLYPDCRHYNEVIRAYGNVGKLSDACRIFYELKTVGIGLELGCFRTLVK 867
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/107 (22%), Positives = 49/107 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I L ++G+ E+E L +M+ +G+ PS F Y +I + + G + +M+
Sbjct: 252 TIICALGKLGRYQESEALYLDMKKQGIVPSKFTYTIMINVWSKAGRFASAAETLAEMQRS 311
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
G D V +++ YG ++M G+ ++Y S+
Sbjct: 312 GCIADEVVYCSIINMYGKAGLYEEAEKIFKEMDTLGLLSHEKSYTSM 358
Score = 38.5 bits (88), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 45/201 (22%)
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N +V + S+ V +MI+ + +AENL+ EMR G++P + Y + Y
Sbjct: 411 NDMVEAGSANVV---TYGNMINLYSKFQMVEDAENLLAEMRESGVKPDEYIYGSFVKLYC 467
Query: 236 RLGLLEDMERIVNQMESDG------------------TRVDTVCSNMVLSSYGDHNELSR 277
+++ +V +M+ DG + +DT N +L + EL
Sbjct: 468 NSDMIDKATMVVQEMKDDGLESVCNEREMFPLGQALQSPIDTQILNQLLIKRAEAGELRE 527
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM--------------SMLQDLNSNDFPLSI 323
L L K+ ++G ++++ + +M S+ L D P S+
Sbjct: 528 AELLLDKLVEAG--------GCIVDTAAVLMINLYGRRGLFQKAKSLFNSLQKKDHPPSL 579
Query: 324 LELTEVLNEEEVSVVKELEDS 344
++ + +V KELE++
Sbjct: 580 YVYNTMI--KLCAVCKELEEA 598
>gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 642
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 15/196 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI+S K ++ + L + +SS+ VY MI + G+ EA +
Sbjct: 448 YCSLINSLGKVKRYEAANELFLELKENCGHSSARVYA------VMIKHFGKCGRLSEAVD 501
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM G +P + Y ++ G R G++++ + ++ M+ +G D N++L+
Sbjct: 502 LFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCSPDLNSHNIILNGLA 561
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
R + KMK S I +YN+VL S +++++N F + +
Sbjct: 562 RTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKLMREMNLKGFEYNNI 621
Query: 325 ELTEVLNEEEVSVVKE 340
T +L E V V E
Sbjct: 622 TYTSIL--EAVGKVDE 635
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +F K G D+ RL + + +Y + +++ ++ + +A ++
Sbjct: 237 YSALISAF----GKLGHYDSAIRLFDEM-KENGLYPTAKIYTTLLGIYFKLDKVEKALDV 291
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I+EM+ KG + F Y I G G+ G ++D R+ M DG + D V N +++ G
Sbjct: 292 IKEMKDKGCTLTVFTYTEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGK 351
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +KM+ +V TYN+V+ +
Sbjct: 352 VGRLEVTLKLFRKMESWQCKPNVVTYNTVIKA 383
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/173 (18%), Positives = 80/173 (46%), Gaps = 8/173 (4%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D + + + + +V SS+ V + L ++ L + ++A ++ +++ + +P
Sbjct: 138 DEAGFYGEMWKTIQDMVRSSTCV-ISSVYLSEIVKLLGKAKMVNKALSVFYQIKGRKCKP 196
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELSRMVLW 281
+ Y +I + G LE + I N+M +DG DTV + ++S++G +
Sbjct: 197 AATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKLGHYDSAIRL 256
Query: 282 LQKMKDSGIPFSVRTYNSV------LNSCSTIMSMLQDLNSNDFPLSILELTE 328
+MK++G+ + + Y ++ L+ + +++++ L++ TE
Sbjct: 257 FDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTYTE 309
>gi|449436409|ref|XP_004135985.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/245 (22%), Positives = 106/245 (43%), Gaps = 21/245 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G E A L E + + ++ V Y L+D+ CK D Y +
Sbjct: 299 LLAVCSRGGLWEAARNLFNEMIDRGIDQD---VFTYNTLLDAVCKGGQ---MDLAYEIML 352
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +M G + G+ +A NL EM+ G+ Y ++ Y +
Sbjct: 353 EM--PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LG ED ++ +M S G + D V N +L YG + + + ++MK + ++ T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470
Query: 297 YNSVLNSCST------IMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKE-LEDSSV--L 347
Y+++++ S M + ++ ++ +E++N ++ K L DS+V L
Sbjct: 471 YSTLIDVYSKGSLYEEAMEVFREFKQAGLKADVVLYSELIN----ALCKNGLVDSAVLLL 526
Query: 348 DEAMK 352
DE K
Sbjct: 527 DEMTK 531
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L +G+ A+ + E +G + F + +I YG+ G ++ ++ M+
Sbjct: 192 AMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + + V N V+ + G E R+V ++M +G+ TYNS+L CS
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCS 304
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMERIVNQ 249
A ++IS + G EA + E M+V GL+P+ Y +I G+ G+ + + I +
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 250 MESDGTRVDTVCSNMVLS--SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M +G + D + N +L+ S G E +R + +M D GI V TYN++L++
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNL--FNEMIDRGIDQDVFTYNTLLDA 337
Score = 41.2 bits (95), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 84/383 (21%), Positives = 147/383 (38%), Gaps = 91/383 (23%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
A LD KQG+ E T + + + K R +L Y LID + K + +
Sbjct: 438 ALLDGYGKQGKFNEV-TRVFKEMKK--DRVFPNLLTYSTLIDVYSKGSLYEEAMEVFREF 494
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
Q + V +I+ LC+ G A L++EM +G+ P+ Y II +G
Sbjct: 495 KQAGLKADVVLYSE-----LINALCKNGLVDSAVLLLDEMTKEGIRPNVVTYNSIIDAFG 549
Query: 236 R---LGLLEDMERIVNQMES------------------DGTRVDTVCSNMVLSSYG---- 270
R L D N+ +S D V +V G
Sbjct: 550 RSTTAEFLVDGVGASNERQSESPSFMLIEGVDESEINWDDGHVFKFYQQLVSEKEGPAKK 609
Query: 271 ---DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSND--- 318
E+ ++ +KM + I +V T++++LN+CS S +L++L D
Sbjct: 610 ERLGKEEIRSILSVFKKMHELEIKPNVVTFSAILNACSRCKSIEDASMLLEELRLFDNQV 669
Query: 319 ----------FPLSILELTEVLNEEEVSVVKELEDS--SVLDEA---MKWDSGETK---- 359
F ++ + L +E VK+++ S S A M W G+ +
Sbjct: 670 YGVAHGLLMGFSENVWIQAQYLFDE----VKQMDSSTASAFYNALTDMLWHFGQKRGAQL 725
Query: 360 -------------------LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVC 400
LDLH M G+A ++ W+ + + E H +P ++++
Sbjct: 726 VVLEGKRRKVWETLWSDSCLDLHLMSSGAARAMVHAWLLGIHSVV-FEGHQLPKLLSILT 784
Query: 401 GSGKHSTVRGESSVKAMVKKMMV 423
G GKHS V G+ +++ ++ ++
Sbjct: 785 GWGKHSKVVGDGALRRAIEALLT 807
>gi|255685736|gb|ACU28357.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L ++++ V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKXGS---VEDAIRLLXRMIDEGFXPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ ++M ++ G +V TY +++
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVBEAXALFKRMEEEEGCDQTVYTYTILISG 171
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E + E M KG +P+ Y +I GY + G +ED R++ +M +G D V ++V+
Sbjct: 4 EGYAVFENMIRKGSKPNVAIYTVLIDGYAKXGSVEDAIRLLXRMIDEGFXPDVVTYSVVV 63
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + + + Q + +G+ + Y+S+++
Sbjct: 64 NGLCKNGRVEEALDYFQTCRFNGLAINSMFYSSLIDG 100
>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
lyrata]
Length = 1010
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 60/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A L EEM+ +GL P Y +I G+G++G L+D +M+
Sbjct: 101 MIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 160
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + + ++MK +G+ +V +Y++++++
Sbjct: 161 CEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDA 209
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMGQPH 206
V+ +C LID CK+ D + R++ + +++++Y +MI GLC+ Q
Sbjct: 305 VVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYT------AMIDGLCKGNQVE 358
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A L E+M KGL P Y ++ G + G + + + ++M G ++D + ++
Sbjct: 359 AATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLV 418
Query: 267 SSYGDHNELSRMVLWLQKMKDSGI 290
N+L + +L++M GI
Sbjct: 419 WGLSHCNQLQKARSFLEEMIGEGI 442
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ ++G+ + ++M G +P+ F Y +I + G +E
Sbjct: 56 VFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAAR 115
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ +G L V + ++MKD V TYN+++N
Sbjct: 116 GLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 173
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 19/119 (15%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK-------SMISGLCE 201
V+ Y LI+ FCK + +L + + + KR LK +++ C+
Sbjct: 165 VITYNALINCFCK----------FGKLPKGLEFFREM--KRNGLKPNVVSYSTLVDAFCK 212
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
G +A +MR GL P+ + Y +I Y ++G L D R+ N+M G + V
Sbjct: 213 EGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVV 271
>gi|225451505|ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080
[Vitis vinifera]
Length = 660
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
KRG D + ++ SS + + + M+S LC+ G+ EA +++EM+ GL+P
Sbjct: 375 KRGKADELLEVFHIL-SSRNYFSDLETYSVMVSFLCKAGRVREAYGVLQEMKKNGLDPDI 433
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y C++ R LL +R+ ++M + G V+ N+++ + + ++ Q
Sbjct: 434 SSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFSEIGQIQEAQWLFQH 493
Query: 285 MKDSGIPFSVRTYNSVL 301
M + G+ TY S+L
Sbjct: 494 MLEKGVNPDATTYTSLL 510
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 39 GQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
G L++L +V+ ++ L KF+ S F L LS+L + L ++
Sbjct: 328 GNDVLNALVGSVSSIDPGSAMLFFKFMISKESFPTLLTLSNLGRNLCKRGKADEL-LEVF 386
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
++ ++F + + + +++FL K G+ EA ++ E K + ++ + C L+++
Sbjct: 387 HILSSRNYFS-DLETYSVMVSFLCKAGRVREAYGVLQEM--KKNGLDPDISSYNC-LMEA 442
Query: 159 FCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
C+ D +KR +D+ +A S V + +I E+GQ EA+ L +
Sbjct: 443 CCREDLLRPAKRLWDEMFA---------SGYGVNLKTYNILIQKFSEIGQIQEAQWLFQH 493
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLED-MERIVNQMESDGTRVDTVCSNMVL 266
M KG+ P Y ++ G + E E +E D T+ + +L
Sbjct: 494 MLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQTILNTFIL 546
>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
Length = 619
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA +L M+ G P + +I GYG+ G L+++E++V +M G
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSG 253
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N +++ + + + MK G+ +V T+++ +++
Sbjct: 254 CKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDA 302
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/260 (21%), Positives = 107/260 (41%), Gaps = 19/260 (7%)
Query: 46 LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105
L LA R + RL + A P N + L + SL + R+ E
Sbjct: 165 LRLARDRSGRLVRRLFEQLPA--PNVFTFNIVIDFLCKEGELAEARSL----FSRMKEMG 218
Query: 106 WFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
P +V +I K G+ +E E L+ E + + G + V+ Y LI+ FCK
Sbjct: 219 CL---PDVVTFNSLIDGYGKCGELDEVEQLV-EEMRRSGCKAD--VVTYNALINCFCKFG 272
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+A + + V + + C+ G EA L +MRV+G+ +
Sbjct: 273 RMETAYGYFAAMKR-----EGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALN 327
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
F Y C+I G + G L+D ++++M G ++ V +++ +++ L+
Sbjct: 328 EFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLR 387
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
M+ +G+ + Y ++++
Sbjct: 388 MMEKAGVRANELLYTTLIHG 407
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 32/206 (15%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS-FCKHDSKRGFDDTYARLNQLV 179
L K+ + EAE +L + K G R EL+ Y LI F +S++ N+ +
Sbjct: 373 LCKERKVAEAED-VLRMMEKAGVRANELL--YTTLIHGHFMNKNSEKALGLLSEMKNKGL 429
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII---YGYGR 236
S+Y ++I GLC + + EA++L+ +M GLEP+ Y ++ + G+
Sbjct: 430 ELDISLY------GALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGK 483
Query: 237 L-------------------GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ G L + ++ N+M G +D V +L Y L
Sbjct: 484 VPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHD 543
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNS 303
KM DSG+ + Y ++
Sbjct: 544 AFALKAKMIDSGLQLDLFCYTCFISG 569
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 46/244 (18%), Positives = 99/244 (40%), Gaps = 24/244 (9%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+ID CK ++R+ ++ V S+I G + G+ E E L+EE
Sbjct: 194 VIDFLCKEGELAEARSLFSRMKEMGCLPDVV-----TFNSLIDGYGKCGELDEVEQLVEE 248
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
MR G + Y +I + + G +E M+ +G + V + + ++
Sbjct: 249 MRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGL 308
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN-SCST-----IMSMLQDLNSNDFPLSILELTE 328
+ + +M+ G+ + TY +++ +C + +L ++ PL+++ T
Sbjct: 309 VREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTV 368
Query: 329 VLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380
+++ E V++ +E + V + + T L +HG + L + E
Sbjct: 369 LVDGLCKERKVAEAEDVLRMMEKAGVRANELLY----TTL-IHGHFMNKNSEKALGLLSE 423
Query: 381 MRNR 384
M+N+
Sbjct: 424 MKNK 427
Score = 41.6 bits (96), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/159 (17%), Positives = 69/159 (43%), Gaps = 5/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +D+FCK R +A++ + + +I G C+ G+ +A
Sbjct: 293 VVTFSTFVDAFCKEGLVREAMKLFAQMR-----VRGMALNEFTYTCLIDGTCKAGRLDDA 347
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++EM +G+ + Y ++ G + + + E ++ ME G R + + ++
Sbjct: 348 IVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHG 407
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ + + + L +MK+ G+ + Y +++ +
Sbjct: 408 HFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNV 446
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C SK D+ L Q+ S + V ++I G C+ + EAE +
Sbjct: 438 YNMLIDSLC---SKGKLDEALNMLKQMELSGCARSVI--TYNTLIDGFCKANKIREAEEI 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM V G+ + Y +I G + +ED ++++QM +G + D N +L+ +
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCR 552
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +Q M +G + TY ++++
Sbjct: 553 GGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I+ L K G+ +EA +E L ++ +R+ + Y LI + CK + + AR
Sbjct: 336 VISGLCKLGEVKEA----VEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE-LAR- 389
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
V +S + S+I GLC A L EEMR KG EP F Y +I
Sbjct: 390 ---VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G L++ ++ QME G + N ++ + N++ +M+ G+ +
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSV 506
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 507 TYNTLIDG 514
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
++ FCK +D + ++ N + + ++++GLC+ G A +++
Sbjct: 265 IVHGFCKEGR---VEDALNFIQEMSNQDG-FFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P + Y +I G +LG +++ ++QM + +TV N ++S+ N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + GI V T+NS++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLI 407
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC Q A ++E+M GL P + I+ GY G L+ RI QM G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFG 254
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKM--KDSGIPFSVRTYNSVLNS 303
V N+++ + + + ++Q+M +D P T+N+++N
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFP-DQYTFNTLVNG 304
>gi|296082318|emb|CBI21323.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
KRG D + ++ SS + + + M+S LC+ G+ EA +++EM+ GL+P
Sbjct: 375 KRGKADELLEVFHIL-SSRNYFSDLETYSVMVSFLCKAGRVREAYGVLQEMKKNGLDPDI 433
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y C++ R LL +R+ ++M + G V+ N+++ + + ++ Q
Sbjct: 434 SSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFSEIGQIQEAQWLFQH 493
Query: 285 MKDSGIPFSVRTYNSVL 301
M + G+ TY S+L
Sbjct: 494 MLEKGVNPDATTYTSLL 510
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 52/233 (22%), Positives = 101/233 (43%), Gaps = 19/233 (8%)
Query: 39 GQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98
G L++L +V+ ++ L KF+ S F L LS+L + L ++
Sbjct: 328 GNDVLNALVGSVSSIDPGSAMLFFKFMISKESFPTLLTLSNLGRNLCKRGKADEL-LEVF 386
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
++ ++F + + + +++FL K G+ EA ++ E K + ++ + C L+++
Sbjct: 387 HILSSRNYFS-DLETYSVMVSFLCKAGRVREAYGVLQEM--KKNGLDPDISSYNC-LMEA 442
Query: 159 FCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
C+ D +KR +D+ +A S V + +I E+GQ EA+ L +
Sbjct: 443 CCREDLLRPAKRLWDEMFA---------SGYGVNLKTYNILIQKFSEIGQIQEAQWLFQH 493
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLED-MERIVNQMESDGTRVDTVCSNMVL 266
M KG+ P Y ++ G + E E +E D T+ + +L
Sbjct: 494 MLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQTILNTFIL 546
>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
Length = 667
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 109 WNP--KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---- 162
W P + A ++ F ++ + +EAE ++ E K + V+ +I+++CK
Sbjct: 107 WRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLA---PCVVTCTAVINAYCKEGRMS 163
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+ R + L +L +V+ +++ G C G+ H+A L+ +MR G+ P
Sbjct: 164 DALRVLE-----LMKLRGCKPNVWT----YNALVQGFCNEGKVHKAMTLLNKMRACGVNP 214
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G G +E R++ ME DG D N ++++ +
Sbjct: 215 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 274
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
++ GI + T+NS++N
Sbjct: 275 DSLETRGIKPNAVTFNSLING 295
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 27/215 (12%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A +L ++L G + + + +LI+ CK D + L
Sbjct: 257 LINALCKDGRTDQACSL-FDSLETRGIKPNAVT--FNSLINGLCKSGKA---DIAWKFLE 310
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY---- 232
++V S+ S I LC+M E + I EM K ++PS Y +I+
Sbjct: 311 KMV--SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLK 368
Query: 233 --GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
YG + R +M S G D V + +Y L+ L +M +G+
Sbjct: 369 ERNYGLVA------RTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGV 422
Query: 291 PFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
YN++++ ++I D +SIL+
Sbjct: 423 TVDTMAYNTLMDGHASI-------GQTDHAVSILK 450
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 44/185 (23%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC-------- 200
V+ Y LI+ C+ D+ ++ +Y +++ GLC
Sbjct: 45 VVSYATLIEGLCEAGR---IDEAVELFGEMDQPDMHMYA------ALVKGLCNAERGEEG 95
Query: 201 --------EMG-------------------QPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
E+G + EAE +++EM KGL P +I
Sbjct: 96 LLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 155
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + G + D R++ M+ G + + N ++ + + ++ + + L KM+ G+
Sbjct: 156 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPD 215
Query: 294 VRTYN 298
TYN
Sbjct: 216 AVTYN 220
>gi|242050480|ref|XP_002462984.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
gi|241926361|gb|EER99505.1| hypothetical protein SORBIDRAFT_02g035800 [Sorghum bicolor]
Length = 668
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M++DG V +
Sbjct: 523 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVL 582
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++G+ V TY +++ +
Sbjct: 583 NSLINAFGEDRRVVEAFSVLQFMKENGLRPDVITYTTLMKA 623
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 86/192 (44%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + + S + +
Sbjct: 266 VTALISALGSAGRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVRIGSLKNAEQV 321
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
++Q V ++ G+ A L++EM G++PS + + I+
Sbjct: 322 LDEMSQ-----CGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 376
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M++ G R D N+++ ++G +N L + +M++ I
Sbjct: 377 AGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYNCLGHAMDAFDRMREEEIE 436
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 437 PDVVTWNTLIDA 448
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 8/163 (4%)
Query: 144 REREL---VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
RE E+ V+ + LID+ CK G D L + + S+ MI+ L
Sbjct: 431 REEEIEPDVVTWNTLIDAHCKG----GRHDRAMELFEEMRESNCP-PGTTTYNIMINLLG 485
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
E + E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG +
Sbjct: 486 EQERWEGVEAMLSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADGLKPSPT 545
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++++Y + ++ MK G+ S+ NS++N+
Sbjct: 546 MYHALVNAYAQRGLADHALNVVKAMKADGLEVSILVLNSLINA 588
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/124 (21%), Positives = 55/124 (44%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM+ G+ P Y +I +G+
Sbjct: 365 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMQASGVRPDRHFYNVMIDTFGKYN 418
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L ++M + D V N ++ ++ R + ++M++S P TYN
Sbjct: 419 CLGHAMDAFDRMREEEIEPDVVTWNTLIDAHCKGGRHDRAMELFEEMRESNCPPGTTTYN 478
Query: 299 SVLN 302
++N
Sbjct: 479 IMIN 482
>gi|357431212|gb|AET78283.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431214|gb|AET78284.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431216|gb|AET78285.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431218|gb|AET78286.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431220|gb|AET78287.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431226|gb|AET78290.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431230|gb|AET78292.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431232|gb|AET78293.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431234|gb|AET78294.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431236|gb|AET78295.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431238|gb|AET78296.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431248|gb|AET78301.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431260|gb|AET78307.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431264|gb|AET78309.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431266|gb|AET78310.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID + K S +D L ++++ V ++ +++GLC+ G+ EA
Sbjct: 6 VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEA 60
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + R GL + Y +I G G++G +++ ER+ +M G D+ C N ++ +
Sbjct: 61 LDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 120
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
+ H +++ + ++M ++ G +V TY +++
Sbjct: 121 FTKHGKVNEALALFKRMEEEEGCDQTVYTYTILISG 156
>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
Group]
gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
Length = 796
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC M + EA + + E+ KGL P Y II+ Y + G LE+ R N+M +
Sbjct: 529 TLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N +++ H +L + + + + G V TYN+++ S
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C+ G +A L++EM KGL+ F ++Y ++ ED E +++
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483
Query: 254 GTRVDTVCSNMVLSSY-GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D V V+++Y ++N + LW Q ++ IP S+ TYN+++
Sbjct: 484 GFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIP-SISTYNTLI 531
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 198 GLCEMGQPHEAENLIEEM-RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
GLC+ G+ EA L +EM R+ P Y ++ + D R++ +M G +
Sbjct: 322 GLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVK 381
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V N+V+ S +L + L+K+ + G+ V TYN+++++
Sbjct: 382 PTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDA 428
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L+EEMR KG++P+ + ++ + G LE+ + ++ +G D + N ++
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
+Y +++ + +M G+ T N+VL N C
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLC 465
Score = 42.0 bits (97), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++S +G +A ++E M G EP Y + G + G +++ R+ ++ME
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERL 342
Query: 254 GTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
T + D V N ++ + S + L++M+D G+ ++ T+N V+ S
Sbjct: 343 STALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKS 393
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 39/82 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I +C++G A + ++M VKGL+P F Y ++ G E+ +++++
Sbjct: 634 TLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693
Query: 254 GTRVDTVCSNMVLSSYGDHNEL 275
G + ++ S D ++
Sbjct: 694 GKLSQSFACPLLKPSSADEADV 715
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I ++CK ++ + N++V +S V ++++GLC G+ +A L
Sbjct: 562 YNIIIHAYCKEGD---LENAFRFHNKMVENSFKPDV--VTCNTLMNGLCLHGKLDKALKL 616
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E KG + Y +I ++G ++ + ME G + D N+VLS+ +
Sbjct: 617 FESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSE 676
Query: 272 HNELSRMVLWLQKMKDSG 289
L K+ DSG
Sbjct: 677 AGRSEEAHNMLHKLADSG 694
>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
Length = 762
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 10/197 (5%)
Query: 108 QWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+ +P +V + IIA L K GQ + +L T+ K G + Y +++ +C +
Sbjct: 226 RISPDVVTYSSIIAALCK-GQAMDKAMEVLTTMVKNGVMPN--CMTYNSILHGYCSSEQP 282
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ + L ++ S V S++ LC+ G+ EA + + M +GLEP
Sbjct: 283 K---EAIGFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIA 337
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y ++ GY G L +M +++ M +G D N+++ +Y ++ +L KM
Sbjct: 338 TYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKM 397
Query: 286 KDSGIPFSVRTYNSVLN 302
+ G+ +V TY +V+
Sbjct: 398 RQHGLNPNVVTYGAVIG 414
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP +V +I L K G ++A E +I E L+ ++ Y +LI S C D
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN-------IIVYTSLIHSLCIFD 455
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P+
Sbjct: 456 K---WDKAEELILEMLDRG--ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ ++++ M S G + D V N +++ Y + + + +
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M SG+ ++ TYN +L
Sbjct: 571 EMVSSGVSPNIITYNIIL 588
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 12/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ E+E L + + ++G + V+ Y LID +C +L++S
Sbjct: 488 KEGRVIESEKL-FDLMVRIGVKPN--VITYSTLIDGYC-------LAGKMDEATKLLSSM 537
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SV +K + ++I+G C + + +A L +EM G+ P+ Y I+ G
Sbjct: 538 FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRT 597
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ + + GT+++ N++L +N + Q + + + RT+N +
Sbjct: 598 AAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 657
Query: 301 LNS 303
+ +
Sbjct: 658 IGA 660
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G + G +A + EM + + P Y II + ++ ++ M +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN 260
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + + N +L Y + + +L+KM+ G+ V TYNS+++
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309
>gi|357159753|ref|XP_003578548.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At4g17915-like [Brachypodium distachyon]
Length = 460
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 14/199 (7%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q + +L+ +A L + G E AE+++++ + LG V+ Y L+ + C+ G
Sbjct: 7 QLSTRLMNVCLAALCRSGSLERAESVLIDAI-LLGMPPD--VVTYNTLLAAHCR---AAG 60
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D +A L ++ + V+ S+I +G A +L +EM G+ P + Y
Sbjct: 61 LDAGFAVLRRM--REAGVWPNAVTYNSLIVAASRVGLTMRALDLFDEMLRAGIAPDAWSY 118
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQK 284
+++ R G ED R+ M G T N +L G RM +LQ+
Sbjct: 119 NVLMHCLFRSGHPEDAYRVFADMAEKGVTPCTTTYNTLLDGLFKAGHATNAYRMFRYLQR 178
Query: 285 MKDSGIPFSVRTYNSVLNS 303
+ G+P + TYN+++N
Sbjct: 179 V---GLPVGIVTYNTMING 194
>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
Length = 1128
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 60/109 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI + + G A L EEM+ +GL P Y +I GYG++G L+D +M+S
Sbjct: 139 MIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMS 198
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + + ++MK SG+ +V +Y++++++
Sbjct: 199 CEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDA 247
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 62/262 (23%), Positives = 104/262 (39%), Gaps = 37/262 (14%)
Query: 55 KAASRLISKFVASS--PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESW-----F 107
K A +L K V + P + NAL H R L L R + F
Sbjct: 325 KEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTF 384
Query: 108 QWN----PKLVAEIIAFLDKQGQREEAETLILETLS----KLGSREREL----------- 148
W K+ A + + Q +A TLI TL K G+ L
Sbjct: 385 IWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDH 444
Query: 149 ---VLFYCNLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMG 203
V+ +C LID CK+ D + R++ + +++VY +MI GLC+
Sbjct: 445 EVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYT------AMIDGLCKEN 498
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
Q A L E+M +GL P Y ++ G + G + + + ++M G ++D +
Sbjct: 499 QVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYT 558
Query: 264 MVLSSYGDHNELSRMVLWLQKM 285
++ + N+L + +L++M
Sbjct: 559 SLVWGFSQCNQLQKARSFLEEM 580
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ ++G+ + ++M G +P+ F Y +I + G +E
Sbjct: 94 VFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAAR 153
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ YG L V + ++MK V TYNS++N
Sbjct: 154 GLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLIN 211
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/149 (18%), Positives = 69/149 (46%), Gaps = 5/149 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID C + + + + ++ ++ V + ++I G + A
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKM-----VTAGVIPNLASYNALIHGFVKAKNMDRA 362
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ E++ +G++P Y I+G L +E + ++N+M+ +G + +T+ ++ +
Sbjct: 363 LELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDA 422
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
Y + + L++M++ +V T+
Sbjct: 423 YFKSGNPTEGLHLLEEMQELDHEVTVVTF 451
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LI+ FCK + Y + Q S + + +++ C+ +A
Sbjct: 203 VITYNSLINCFCKSGKLPKGLEFYREMKQ-----SGLKPNVVSYSTLVDAFCKEDMMQQA 257
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+MR G P+ F Y ++ ++G L D R+ N+M G + V ++
Sbjct: 258 IKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDG 317
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + KM +G+ ++ +YN++++
Sbjct: 318 LCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHG 352
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 66/153 (43%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+D+FCK D + Y + ++ + + S++ C++G +A
Sbjct: 238 VVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEF-----TYTSLVDANCKIGNLSDA 292
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EM G+E + Y +I G +++ E++ +M + G + N ++
Sbjct: 293 FRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHG 352
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + R + L ++K GI + Y + +
Sbjct: 353 FVKAKNMDRALELLNELKGRGIQPDLLLYGTFI 385
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I+GLC G+ EA L EM +G EP+ Y +I G + G + +M
Sbjct: 165 TFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E +G + + V + ++ S ++ + +L +M + GIP +V TYNS+++
Sbjct: 225 EQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHG 277
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I L +G+ +EA +E +++ R E V+ Y +I+ CK + D + ++
Sbjct: 169 LINGLCNEGKIKEA----VELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKM 224
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
Q N V ++I LC+ ++A + EM +G+ P+ F Y I++G+
Sbjct: 225 EQ--NGCKPNVV---TYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFC 279
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
LG L + R+ +M +TV +++ +S L + M + G+ +
Sbjct: 280 NLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDIS 339
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 340 TYNALMDG 347
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +IDS CK R +D L+++V V S++ G C +GQ +EA
Sbjct: 233 VVTYSTIIDSLCK---DRLVNDAMEFLSEMVERGIPPNV--FTYNSIVHGFCNLGQLNEA 287
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +EM + + P+ + ++ G + G++ + + M G D N ++
Sbjct: 288 TRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDG 347
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ + M G +YN ++N
Sbjct: 348 YCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILING 382
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 26/186 (13%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K+G EA L+ ET+++ G + Y L+D +C L +L+N
Sbjct: 313 LCKEGMVSEAR-LVFETMTEKGVEPD--ISTYNALMDGYC--------------LQRLMN 355
Query: 181 SSSSVY---VKR------QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ V+ +++ + +I+G C+ + EA++L+ EM K L P Y ++
Sbjct: 356 EAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLM 415
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G +LG ++ + +M S G + V ++L + H L + L+ MK+ +
Sbjct: 416 QGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLE 475
Query: 292 FSVRTY 297
++ Y
Sbjct: 476 PNIVHY 481
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C+ G EA L++ M+ K LEP+ Y +I G G LE + + +++ DG
Sbjct: 449 LLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDG 508
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
TR D +++ +KM+D G + +YN ++
Sbjct: 509 TRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMI 555
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 72/160 (45%), Gaps = 9/160 (5%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMG 203
R V+ + + SF K K+ + + NQ L + +VY +L +I+ LC +
Sbjct: 90 RPSVVEFGKFLGSFAK---KKQYSTVVSLCNQMDLFRVTHNVY----SLNILINCLCRLN 142
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ +++ +M G+ P + +I G G +++ + N+M G + +
Sbjct: 143 HVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYT 202
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V++ S V +KM+ +G +V TY+++++S
Sbjct: 203 TVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDS 242
>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
R EA ++ + +L R + V + +I+ CK + D + +S V
Sbjct: 200 NRTEAAWVLYAEMFRL--RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM-----ETSGV 252
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+++ G C G+ A+ ++ M+ + +EP F Y +I G + G LE+ +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
I +M G R V N ++ + + L + +M GI ++ TYNS++++
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHA 370
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 92/213 (43%), Gaps = 10/213 (4%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S + K ++ L K+ + +EA+ L + S+ + + + LID C + +
Sbjct: 425 SGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD---AIMFNALIDGHCSNSN 481
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+G + ++++ V +++ G C G+ EA L +EM+ +G++P
Sbjct: 482 VKGAFELLKDMDRMKVPPDEV-----TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ +I GY R G ++D R+ N+M G + N ++ + E L++
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKE 596
Query: 285 MKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSN 317
M G+ TY +++ + + + D N N
Sbjct: 597 MVSKGMTPDDTTYFTLIEGIAKV--NIPDENKN 627
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 101/239 (42%), Gaps = 18/239 (7%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I+ + KQG+ EEA + E + K G R ++ Y LID FC +K D A
Sbjct: 295 GSLISGMCKQGRLEEASKIFEEMVQK-GLRPSAVI--YNTLIDGFC---NKGNLDMASAY 348
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++++ S + S+I L + EAE +I+E++ KG+ P Y +I GY
Sbjct: 349 KDEMLKKGISPTM--STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGY 406
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R + + ++M + G + +L N + +K+ G+
Sbjct: 407 CRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDA 466
Query: 295 RTYNSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVLN----EEEVSVVKELED 343
+N++++ CS +L+D++ P + ++ E +V +EL D
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFD 525
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 9/180 (5%)
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSV 185
R EA IL T+ + Y +LI CK + + Q + S+ +
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFT--YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVI 328
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
Y ++I G C G A +EM KG+ P+ Y +I+ ++ E
Sbjct: 329 Y------NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
++ +++ G D + N++++ Y + L +M SGI + +TY S+L+ S
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 14/227 (6%)
Query: 75 NALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
N L HLL P + A +Y R+ E + + K + ++ L ++G + L
Sbjct: 205 NGLIHLLLPG-----FCNEALKVYKRMISEG-MKPSMKTYSALMVALGRRGDTRKIMNL- 257
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
LE + +G R + Y I + + R DD + ++ + V +
Sbjct: 258 LEEMKSIGLRPN--IYTYTICIRALGR---ARRIDDAWGIFKEMDDEGCGPDVITYTV-- 310
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC G+ +A+ L +MR P Y ++ +G++G LE ++R N+ME DG
Sbjct: 311 LIDALCAAGKLDKAKELYVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDG 370
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V +++ + ++ R L M GI ++ TYN+++
Sbjct: 371 YAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMI 417
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 86/198 (43%), Gaps = 14/198 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
F P +I L K G+ E+A I E + G ++ Y LI+ F K
Sbjct: 897 FSPTPCTYGPLIDGLLKAGRSEQAMK-IFEEMLDYGCGPNSVI--YNILINGFGKSGE-- 951
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKS---MISGLCEMGQPHEAENLIEEMRVKGLEPS 223
D ++V R LKS ++ LC G+ EA EE+++ GL+P
Sbjct: 952 -IDFACELFKKMVKEGI-----RPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPD 1005
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y II G G+ L++ + ++M++ G D N ++ G ++ V +
Sbjct: 1006 TVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYE 1065
Query: 284 KMKDSGIPFSVRTYNSVL 301
+++ G+ SV TYN+++
Sbjct: 1066 ELQLVGLEPSVFTYNALI 1083
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 45/101 (44%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P +A + E M+ +G+ PS +Y G + + E I N + G D+V
Sbjct: 459 GDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTY 518
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
NM++ Y ++ + L +M G V NS++N+
Sbjct: 519 NMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINT 559
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 50/107 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G A ++++ M KG+ P+ Y +I G + L++ ++ MES G
Sbjct: 381 LIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLG 440
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + YG + ++ + + MK GI S+ N+ L
Sbjct: 441 VKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASL 487
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 41/214 (19%), Positives = 89/214 (41%), Gaps = 19/214 (8%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP ++ L L+ H R+ A + M ++ Q N + E++ + + +
Sbjct: 686 SPDYVTL---CTLIPGVVRHGRVED-AIKVVMEFVHQACLQTNSQFWGELMECILTEAEI 741
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSS 183
EEA + + ++ ++L LI CK D++ FD L
Sbjct: 742 EEAISFAEILVCNSVCQDDHVML---PLIKVLCKRKKALDAQNVFDKFTKNL-------- 790
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++ ++ ++ GL +A L E+M+ G P+ F Y ++ +G+ + +
Sbjct: 791 GIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKL 850
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+ ++M S G + + N+++S+ N L++
Sbjct: 851 YDLYSEMRSRGCEPNAITHNIIISALVKSNNLNK 884
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEM-RVKGLEPSGFEYKCIIYGYGRLGLLE 241
+SV + +I LC+ + +A+N+ ++ + G+ P+ Y C++ G E
Sbjct: 754 NSVCQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTE 813
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ M+S GT + N++L ++G ++++ +M+ G + T+N ++
Sbjct: 814 KALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIII 873
Query: 302 ------NSCSTIMSMLQDLNSNDF 319
N+ + + + +L S DF
Sbjct: 874 SALVKSNNLNKALDLYYELMSGDF 897
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 10/193 (5%)
Query: 108 QWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+ NP +V +I K+G+ EAE L E + + S + +V Y +LI+ FC HD
Sbjct: 321 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR--SIDPNIVT-YNSLINGFCMHDR- 376
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D+ +V S ++I G C+ + E L EM +GL +
Sbjct: 377 --LDEAQQIFTLMV--SKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 432
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I G + G + ++I +M SDG D + +++L + +L + ++ + +
Sbjct: 433 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 492
Query: 286 KDSGIPFSVRTYN 298
+ S + ++ TYN
Sbjct: 493 QKSKMEPNIYTYN 505
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y +I G+ R GL E+ + + +M+ DG
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 566
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T D+ C N ++ + + + +++M+ G T + V+N
Sbjct: 567 TLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 614
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I GL + EA LI+ M +G +P F Y ++ G + G ++ ++ +ME
Sbjct: 189 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 248
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V N ++ + + KM+ GI V TYNS++ SC
Sbjct: 249 KGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLI-SC 300
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ +A +L +M KG++P F Y +I G D R+++ M
Sbjct: 261 TIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIER 320
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ +L +M I ++ TYNS++N
Sbjct: 321 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 370
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLN- 176
+++L+ L K G E+ LV+F Y +I+ CK D + L+
Sbjct: 470 SILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 529
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V + +Y +MISG C G EA+ L EM+ G P Y +I R
Sbjct: 530 KGVKPNVIIYT------TMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLR 583
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
G ++ +M S G D +MV++ D
Sbjct: 584 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 618
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ + +LID+F K ++++ FD+ R S+ S+I+G C +
Sbjct: 326 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQR---------SIDPNIVTYNSLINGFCMHDR 376
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA+ + M K P Y +I G+ + +E+ + +M G +TV N
Sbjct: 377 LDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 436
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +KM G+P + TY+ +L+
Sbjct: 437 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 475
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++ C Q A ++ +M G EP ++ GY + + +V+QM G
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ DTV N ++ HN+ S V + +M G + TY +V+N
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 230
>gi|449518511|ref|XP_004166285.1| PREDICTED: pentatricopeptide repeat-containing protein At2g31400,
chloroplastic-like [Cucumis sativus]
Length = 868
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 83/189 (43%), Gaps = 8/189 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G E A L E + + ++ V Y L+D+ CK D Y +
Sbjct: 299 LLAVCSRGGLWEAARNLFNEMIDRGIDQD---VFTYNTLLDAVCKGGQ---MDLAYEIML 352
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +M G + G+ +A NL EM+ G+ Y ++ Y +
Sbjct: 353 EM--PGKKILPNVVTYSTMADGYAKAGRLEDALNLYNEMKFLGIGLDRVSYNTLLSIYAK 410
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
LG ED ++ +M S G + D V N +L YG + + + ++MK + ++ T
Sbjct: 411 LGRFEDALKVCKEMGSSGVKKDVVTYNALLDGYGKQGKFNEVTRVFKEMKKDRVFPNLLT 470
Query: 297 YNSVLNSCS 305
Y+++++ S
Sbjct: 471 YSTLIDVYS 479
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L +G+ A+ + E +G + F + +I YG+ G ++ ++ M+
Sbjct: 192 AMISTLGRLGKVELAKGVFETALSEGYGNTVFAFSALISAYGKSGYFDEAIKVFESMKVS 251
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + + V N V+ + G E R+V ++M +G+ TYNS+L CS
Sbjct: 252 GLKPNLVTYNAVIDACGKGGVEFKRVVEIFEEMLRNGVQPDRITYNSLLAVCS 304
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 60/116 (51%), Gaps = 5/116 (4%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMERIVNQ 249
A ++IS + G EA + E M+V GL+P+ Y +I G+ G+ + + I +
Sbjct: 224 AFSALISAYGKSGYFDEAIKVFESMKVSGLKPNLVTYNAVIDACGKGGVEFKRVVEIFEE 283
Query: 250 MESDGTRVDTVCSNMVLS--SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M +G + D + N +L+ S G E +R + +M D GI V TYN++L++
Sbjct: 284 MLRNGVQPDRITYNSLLAVCSRGGLWEAARNL--FNEMIDRGIDQDVFTYNTLLDA 337
>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 867
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 55/112 (49%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S++ LC+ + EA + + KG +P Y +++GY G DM + + M
Sbjct: 380 FNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMT 439
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G D+ C N++++++ + +L +M+ G+ +V TY +V+ +
Sbjct: 440 DNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAA 491
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 172 YARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ +N L +S + + +I+ + G EA + EMR +G+ P+ Y
Sbjct: 428 FVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYAT 487
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I R+G L D ++QM S G + +TV + ++ + H +L + + +M D G
Sbjct: 488 VIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547
Query: 290 IPF-SVRTYNSVLNS 303
IP ++ ++S+++S
Sbjct: 548 IPRPNITFFSSIIHS 562
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 12/187 (6%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183
G +A+ L+ E + + R + F+ ++I S C D + L +
Sbjct: 530 HGDLIKAKELVSEMMDQ--GIPRPNITFFSSIIHSLCNEGRVMNAQDVF-NLVIHIGDRP 586
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++ S+I G C +G+ +A +++ M G EP Y +I GY + G ++D
Sbjct: 587 DIFT----FNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDG 642
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-- 301
+ +M + TV ++VL S +M +SG S+ TY +L
Sbjct: 643 LILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESGTAMSISTYTIILQG 702
Query: 302 ---NSCS 305
N+C+
Sbjct: 703 LCRNNCT 709
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +AE ++ +M ++P Y +I+GY LG ++ ++ +M +
Sbjct: 312 SIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTRE 371
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G D V N ++ S H + G + +Y+ +L+ +T
Sbjct: 372 GLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYAT 424
>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 711
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S + LC+ G+ EA + M KG P+ Y +++GY G DM N M+ D
Sbjct: 226 SFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGD 285
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + +++ +Y + +L L +M+ G+ V TY++++++
Sbjct: 286 GIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISA 335
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 92/199 (46%), Gaps = 10/199 (5%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGF 168
N I+ + K+G+ +A I + + +G ER ++ + LID +C + + F
Sbjct: 396 NIAFFNSIVHSICKEGRVMDAHH-IFDLVKDIG--ERSDIIMFNTLIDGYCLVGEMGKAF 452
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
A ++ + + Y ++++G + G+ + NL EM K ++P+ Y
Sbjct: 453 SVLDAMISAGIGPDTFTY------NTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYN 506
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
I+ G R G ++++++M GT V N++L +N ++ QK+
Sbjct: 507 IILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTM 566
Query: 289 GIPFSVRTYNSVLNSCSTI 307
+ F++ T N+++NS T+
Sbjct: 567 NVKFNITTLNTMINSMYTV 585
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 15/198 (7%)
Query: 113 LVAEIIA---FLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
L+ +I++ F+D K G+ +EA + +K R ++ Y L+ +
Sbjct: 217 LIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAK---GHRPNIVTYGILLHGYATEGC-- 271
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
F D + N + + +I + G EA ++ EM+ +GL P F
Sbjct: 272 -FADMMSFFNTM--KGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFT 328
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I R+G L D NQM G + +TV + ++ + H +L + + +M
Sbjct: 329 YSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMM 388
Query: 287 DSGIPF-SVRTYNSVLNS 303
++GIP ++ +NS+++S
Sbjct: 389 NNGIPRPNIAFFNSIVHS 406
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 66/164 (40%), Gaps = 14/164 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ LC+ AE L+ +M G+ P+ Y +I+GY LG E+ ++ +M
Sbjct: 156 SIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGR 215
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
G D V N + S H M G ++ TY +L+ +T +
Sbjct: 216 GLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADM 275
Query: 308 MSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
MS + + + L T +++ ++DEAM
Sbjct: 276 MSFFNTMKGDGIVANCLVFTILID--------AYAKRGMMDEAM 311
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 72/164 (43%), Gaps = 6/164 (3%)
Query: 141 LGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL 199
+G+ + + Y +LI FC H D + + Y +N + + + S++ +
Sbjct: 353 IGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAF-----FNSIVHSI 407
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259
C+ G+ +A ++ + ++ G + +I GY +G + +++ M S G DT
Sbjct: 408 CKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDT 467
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++ Y + + ++M D I + TYN +L+
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDG 511
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 199 LCEMGQPHEAENLIEEM-RVKGL-EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
LC+ + +A +L+ M + +G+ P Y +I+G+ + G + + ++M G
Sbjct: 89 LCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFV 148
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
D V N ++++ + L L++M D+G+P + TY S+++ ST+
Sbjct: 149 PDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRW------ 202
Query: 317 NDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
EE + +E+ ++ + + W+S L HG
Sbjct: 203 ---------------EEATKMFREMTGRGLIPDIVSWNSFMDSLCKHG 235
>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
mitochondrial-like [Cucumis sativus]
Length = 628
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 78/178 (43%), Gaps = 7/178 (3%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
R EA ++ + +L R + V + +I+ CK + D + +S V
Sbjct: 200 NRTEAAWVLYAEMFRL--RIKSSVYTFNIMINVLCKEGKLKKAKDFVGHM-----ETSGV 252
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+++ G C G+ A+ ++ M+ + +EP F Y +I G + G LE+ +
Sbjct: 253 KPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASK 312
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
I +M G R V N ++ + + L + +M GI ++ TYNS++++
Sbjct: 313 IFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHA 370
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 93/213 (43%), Gaps = 10/213 (4%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S + K ++ L K+ + +EA+ L + S+ + V+ + LID C + +
Sbjct: 425 SGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPD---VIMFNALIDGHCSNSN 481
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+G + ++++ V +++ G C G+ EA L +EM+ +G++P
Sbjct: 482 VKGAFELLKDMDRMKVPPDEV-----TFNTIMQGHCREGKVEEARELFDEMKRRGIKPDH 536
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ +I GY R G ++D R+ N+M G + N ++ + E L++
Sbjct: 537 ISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKE 596
Query: 285 MKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSN 317
M G+ TY +++ + + + D N N
Sbjct: 597 MVSKGMTPDDTTYFTLIEGIAKV--NIPDENKN 627
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 18/239 (7%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I+ + KQG+ EEA + E + K G R ++ Y LID FC +K D A
Sbjct: 295 GSLISGMCKQGRLEEASKIFEEMVQK-GLRPSAVI--YNTLIDGFC---NKGNLDMASAY 348
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++++ S + S+I L + EAE +I+E++ KG+ P Y +I GY
Sbjct: 349 KDEMLKKGISPTM--STYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGY 406
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
R + + ++M + G + +L N + +K+ G+ V
Sbjct: 407 CRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDV 466
Query: 295 RTYNSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVLN----EEEVSVVKELED 343
+N++++ CS +L+D++ P + ++ E +V +EL D
Sbjct: 467 IMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFD 525
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 9/180 (5%)
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSV 185
R EA IL T+ + Y +LI CK + + Q + S+ +
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFT--YGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVI 328
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
Y ++I G C G A +EM KG+ P+ Y +I+ ++ E
Sbjct: 329 Y------NTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAEC 382
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
++ +++ G D + N++++ Y + L +M SGI + +TY S+L+ S
Sbjct: 383 MIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLS 442
>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
Length = 754
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S ++ LC+ G+ EA ++ + M +KG +P Y +++GY G + M+ + N M +
Sbjct: 263 SFMTALCKHGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCE 322
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N ++++Y + + +L + M G+ + T+++V+++
Sbjct: 323 GVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISA 372
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 107/260 (41%), Gaps = 18/260 (6%)
Query: 48 LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107
L + RD+ A +R +++ L+AL+ P + +LA L+ R+ +
Sbjct: 63 LLLRRDAPAPARGLNEL---------LSALARA-PPSAACRDVPALAVELFKRMDRCACP 112
Query: 108 QWNPKLVA-EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+ P + I+ ++ +R + + L + G V Y LID F K
Sbjct: 113 EAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPD--VFSYNALIDGFSKEGEVD 170
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D + ++ + + S+I+GLC+ + +AE ++ +M G+ P+
Sbjct: 171 KAHDLFYKMEE-----QGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMT 225
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y C+I+GY G+ ++ R+ +M S D N +++ H + M
Sbjct: 226 YNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMV 285
Query: 287 DSGIPFSVRTYNSVLNSCST 306
G V +Y ++L+ +T
Sbjct: 286 LKGPKPDVISYGALLHGYAT 305
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 92/208 (44%), Gaps = 13/208 (6%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A+ LI + LSK + F+ ++I++ CK D ++ ++++ +
Sbjct: 416 KAKELISDMLSK--GIPPPCIKFFTSIINNLCKEGRVAEGKDV---VDLIIHTGQRPNL- 469
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
S++ G C +G EA L++ M G+EP + Y ++ GY + G ++D +
Sbjct: 470 -ITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTLFR 528
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NS 303
M + +V N++L +M +SG+ S+ TY +VL N+
Sbjct: 529 DMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNN 588
Query: 304 CSTIMSM-LQDLNSNDFPLSILELTEVL 330
C+ +M L+ L S + IL V+
Sbjct: 589 CTDEANMLLEKLFSMNVKFDILTFNIVI 616
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 79/184 (42%), Gaps = 9/184 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ +EA I +++ G + V+ Y L+ + G D+ + N +V
Sbjct: 268 LCKHGRIKEARD-IFDSMVLKGPKPD--VISYGALLHGYATAGCIAGMDNLF---NVMV- 320
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
V R ++I+ +G ++ + E+M +G+ P + +I + RLG L
Sbjct: 321 -CEGVVPDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRL 379
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNS 299
+D N M G DT + ++ + +L + + M GIP ++ + S
Sbjct: 380 DDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTS 439
Query: 300 VLNS 303
++N+
Sbjct: 440 IINN 443
>gi|357431222|gb|AET78288.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431240|gb|AET78297.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431242|gb|AET78298.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431244|gb|AET78299.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431246|gb|AET78300.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431262|gb|AET78308.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID + K S +D L ++++ V ++ +++GLC+ G+ EA
Sbjct: 6 VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEA 60
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + R GL + Y +I G G++G +++ ER+ +M G D+ C N ++ +
Sbjct: 61 LDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 120
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
+ H ++ + ++M ++ G +V TY +++
Sbjct: 121 FTKHGKVBEALALFKRMEEEEGCDQTVYTYTILISG 156
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 55/107 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C+ G+ A ++E M+ G P+ F Y ++ GY + G L++ + + N+++S G
Sbjct: 268 LINGFCQRGKVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGRLQEAKEVFNEIKSLG 327
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ DT+ +++ + LQ+MKD T+N +L
Sbjct: 328 MKPDTISYTTLINCLCRTGRVDEATELLQQMKDKDCRADTVTFNVML 374
>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Glycine max]
Length = 725
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 59/108 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC G+ ++A +++M +GL P Y +I G ++G +++ + N+++S+G
Sbjct: 593 LISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
R D + N ++S + + L L K DSG + T++ ++N
Sbjct: 653 IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSILIN 700
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI GL + G A L+ EM K EP+ Y +I G+ + G LE+ IVN M + G
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++TV N ++ + + + +M G + T+NS++N
Sbjct: 443 LSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLING 491
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 19/196 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G A L+ E ++K R V+ Y LI+ FCK RL
Sbjct: 383 MIDGLVKKGYLVSALELLNEMVAK---RFEPNVITYTILINGFCKQ----------GRLE 429
Query: 177 Q---LVNSSSS--VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ +VNS S+ + + +I LC+ G EA L EM KG +P + + +I
Sbjct: 430 EAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLI 489
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G + +E+ + + M +G +TV N ++ ++ + + + + +M G P
Sbjct: 490 NGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCP 549
Query: 292 FSVRTYNSVLNS-CST 306
TYN ++ + C T
Sbjct: 550 LDNITYNGLIKALCKT 565
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I GLC G+ HEA L++ M ++G Y +++G R+G +++ ++N+
Sbjct: 276 QTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNK 335
Query: 250 MESDGTRVDTVCSNMVLSSY 269
+ + +TV N ++S Y
Sbjct: 336 IPNP----NTVLYNTLISGY 351
Score = 42.0 bits (97), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 46/109 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I LC+ G + L EEM KG+ P+ +I G R G + D + + M
Sbjct: 557 GLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALKFLQDMIHR 616
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D V N +++ + K++ GI TYN++++
Sbjct: 617 GLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLIS 665
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 134 ILETLSKLGSRERELVLF-------------YCN-LIDSFCKHDSKRGFDDTYARLNQLV 179
+++ L K G+ E+ L LF CN LI C+ +D L ++
Sbjct: 558 LIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGK---VNDALKFLQDMI 614
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+ + + S+I+GLC+MG EA NL +++ +G+ P Y +I + G+
Sbjct: 615 HRGLTPDI--VTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGM 672
Query: 240 LED 242
D
Sbjct: 673 FND 675
>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
lyrata]
Length = 332
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 116 EIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+++AF L ++G+ EAE L+ + + + G + E+ Y +++ CK
Sbjct: 9 DVVAFNTLMNGLCREGRVLEAEALV-DRMVENGHQPNEVT--YGTIVNGMCK------MG 59
Query: 170 DTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
DT + LN L S ++K + ++I LC+ G +A+NL EM KG+ P+ Y
Sbjct: 60 DTDSALNLLRKMDES-HIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTY 118
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
C+I G G D E+++ M D V N +++++ ++S ++M
Sbjct: 119 NCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG 178
Query: 288 SGIPFSVRTYNSVLNS 303
I TYNS+++
Sbjct: 179 RNIFPDTITYNSLIDG 194
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 56/116 (48%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++++GLC G+ EAE L++ M G +P+ Y I+ G ++G + ++ +M
Sbjct: 12 AFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKM 71
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ + D V ++ S+ +M D GI +V TYN +++ C +
Sbjct: 72 DESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCS 127
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 110 NPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+P +V A I AF+ K+G+ EAE L E L G + Y +LID FCKH
Sbjct: 147 DPDVVTFNALINAFV-KEGKISEAEELYREML---GRNIFPDTITYNSLIDGFCKHSR-- 200
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
DD + +V+ S V + ++I G C + + L+ EM +GL P
Sbjct: 201 -LDDAKHIFDLMVSKGGSPNVI--TINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVS 257
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMES 252
Y +I+G+ + G L + + +M S
Sbjct: 258 YNTLIHGFCQAGDLNAAQDLFQEMIS 283
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 10/202 (4%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG-SRERELVLFYCNLIDSFCKH 162
E+ Q N I+ + K G + A L L K+ S + V+ Y +ID CK
Sbjct: 38 ENGHQPNEVTYGTIVNGMCKMGDTDSA----LNLLRKMDESHIKADVVIYTAIIDRLCKD 93
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ + ++ ++ MI G C G+ +AE L+ +M ++P
Sbjct: 94 GHHSKAQNLFTEMHD-----KGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDP 148
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ +I + + G + + E + +M DT+ N ++ + H+ L
Sbjct: 149 DVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIF 208
Query: 283 QKMKDSGIPFSVRTYNSVLNSC 304
M G +V T N+++ C
Sbjct: 209 DLMVSKGGSPNVITINTLIGGC 230
Score = 46.6 bits (109), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 89/206 (43%), Gaps = 10/206 (4%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+R +ES + + + II L K G +A+ L E K G VL Y +ID
Sbjct: 68 LRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDK-GIFPN--VLTYNCMIDG 124
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
C + + D L ++ S+ V ++I+ + G+ EAE L EM +
Sbjct: 125 CCSYGK---WTDAEQLLRDMIESNVDPDV--VTFNALINAFVKEGKISEAEELYREMLGR 179
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
+ P Y +I G+ + L+D + I + M S G + + N ++ +
Sbjct: 180 NIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDG 239
Query: 279 VLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ L +M G +P SV +YN++++
Sbjct: 240 IKLLHEMLRRGLVPDSV-SYNTLIHG 264
>gi|357458279|ref|XP_003599420.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355488468|gb|AES69671.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 511
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 96/215 (44%), Gaps = 16/215 (7%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEA----ETLILETLSKLGSRERELV 149
A ++ + + W++ + +++ L K Q +EA ET++ E L + V
Sbjct: 115 ALMIFELLRNQYWYEPRCQTYTKLLMMLSKCKQPKEASQLYETMLFEGL-------KPTV 167
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
L+ ++ + R T + +V+ VY +IS + + E
Sbjct: 168 DVLTALVSAYGQSGLFRHAFSTIEDMKSVVDCKPDVYT----YSVLISCCAKFRRFDLIE 223
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER-IVNQMESDGTRVDTVCSNMVLSS 268
++ +M G+E + Y II GYG+ G+ E ME + + +E++ + D N ++ S
Sbjct: 224 RVLADMSYSGIECNSVTYNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFTLNSLIGS 283
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
YG+ ++ +M W + + I ++T+N ++ S
Sbjct: 284 YGNGGKIDKMEKWYDEFQLMSIKPDIKTFNMMIKS 318
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y ++ID + K +++ + + N V+ L S+I G+ + E
Sbjct: 241 YNSIIDGYGKAGMFEQMENSLTDMIENENCQPDVFT----LNSLIGSYGNGGKIDKMEKW 296
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E ++ ++P + +I YG+ G+ + M+ +++ ME V N V+ YG
Sbjct: 297 YDEFQLMSIKPDIKTFNMMIKSYGKAGMYDKMKSVMDFMERRFFAPTIVTYNTVIEVYGK 356
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
E+ +M + MK G+ + TY S++N+ S
Sbjct: 357 AGEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYS 390
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 41/76 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ + + + M+ G++P+ Y ++ Y + GL+ ++ I+ +E+ +DT
Sbjct: 358 GEIEKMDKHFKNMKHIGMKPNSVTYCSLVNAYSKAGLIRKIDSILRHVENSDVILDTPFF 417
Query: 263 NMVLSSYGDHNELSRM 278
N ++S+YG +L +M
Sbjct: 418 NCIISAYGQVGDLKKM 433
>gi|218199303|gb|EEC81730.1| hypothetical protein OsI_25362 [Oryza sativa Indica Group]
Length = 583
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKH----DSKRGFD 169
II L K GQ EA +E + + R + V+ Y +++ S+C + + K FD
Sbjct: 157 IIHCLVKIGQCGEA----IELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFD 212
Query: 170 DTYAR--------LNQLVNSSSSVYVKRQALK------------------SMISGLCEMG 203
A N L+ + +S + R+AL S+++
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
QP +A + +M+ +P+ Y +I YG G+L++ ++++ME DG + D V +
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L++ G +++R+ L+ + GI + YNS + S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKS 372
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P +VA ++ +G EA I + K G R ++ Y +L++++ +
Sbjct: 221 PNIVAYNSLLGAYASRGMHREA-LAIFNLIKKNGLRPD--IVSYTSLLNAYGRSAQPEKA 277
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ + ++ + NS V AL I G EA L+ EM G++P
Sbjct: 278 REVFNKMKK--NSCKPNKVSYNAL---IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ GR + +E I+ S G ++TV N + SY + + + M++S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392
Query: 289 GIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ TYN +++ S + + L
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESL 418
>gi|356502612|ref|XP_003520112.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50280,
chloroplastic-like [Glycine max]
Length = 697
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 89/199 (44%), Gaps = 12/199 (6%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
+W+ +++ +I +G R +A +I + K G +V Y L+D+FCK +
Sbjct: 317 RWSEEVLGALINSFCVEGLRRQA-LIIQSEMEKKGVSSSAIV--YNTLMDAFCKSNHIEA 373
Query: 168 FDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ + + + + ++ Y ++ QP E L+EEM+ GL+P+
Sbjct: 374 AEGLFVEMKAKGIKPIAATY------NILMHAYSRRMQPKIVEKLLEEMQDVGLKPNATS 427
Query: 227 YKCIIYGYGRLGLLEDMERI--VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y C+I YG+ + DM +M+ G + + ++ +Y + +
Sbjct: 428 YTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSGLHEKAYAAFEN 487
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M++ GI S+ TY ++LN+
Sbjct: 488 MQNEGIKPSIETYTTLLNA 506
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 95/207 (45%), Gaps = 17/207 (8%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQAL 192
E +++ G R E VL LI+SFC +R + + + V+SS+ VY
Sbjct: 307 FFEKMNRKGVRWSEEVL--GALINSFCVEGLRRQALIIQSEMEKKGVSSSAIVY------ 358
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++ C+ AE L EM+ KG++P Y +++ Y R + +E+++ +M+
Sbjct: 359 NTLMDAFCKSNHIEAAEGLFVEMKAKGIKPIAATYNILMHAYSRRMQPKIVEKLLEEMQD 418
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVL--WLQKMKDSGIPFSVRTYNSVLNSCST---- 306
G + + ++ +YG +S M KMK G+ + ++Y +++++ S
Sbjct: 419 VGLKPNATSYTCLIIAYGKQKNMSDMAAADAFLKMKKVGVKPTSQSYTALIHAYSVSGLH 478
Query: 307 --IMSMLQDLNSNDFPLSILELTEVLN 331
+ +++ + SI T +LN
Sbjct: 479 EKAYAAFENMQNEGIKPSIETYTTLLN 505
>gi|297606902|ref|NP_001059180.2| Os07g0213300 [Oryza sativa Japonica Group]
gi|215767816|dbj|BAH00045.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255677604|dbj|BAF21094.2| Os07g0213300 [Oryza sativa Japonica Group]
Length = 677
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKH----DSKRGFD 169
II L K GQ EA +E + + R + V+ Y +++ S+C + + K FD
Sbjct: 157 IIHCLVKIGQCGEA----IELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFD 212
Query: 170 DTYAR--------LNQLVNSSSSVYVKRQALK------------------SMISGLCEMG 203
A N L+ + +S + R+AL S+++
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
QP +A + +M+ +P+ Y +I YG G+L++ ++++ME DG + D V +
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L++ G +++R+ L+ + GI + YNS + S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKS 372
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 81/175 (46%), Gaps = 15/175 (8%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+S R F+D ++ V+S+ VY S+I + G+ EAE+ M+ G P
Sbjct: 416 ESLRFFEDM---VDSKVSSTKEVY------SSLIYSYIKQGKLSEAESTFSSMKKSGCFP 466
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I Y G + + +ME +G D + + ++ ++ E R++ +
Sbjct: 467 DVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIICSSLMEAFNKGGEPERVLQLM 526
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSILELTEVLN 331
+ MK IP + ++Y ++ SC+ I M++ L+S+ +S+ L VLN
Sbjct: 527 EFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDSSLSSISVGTLNHVLN 581
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 10/141 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISG ++G+ E+ E+M + + Y +IY Y + G L + E + M+ G
Sbjct: 404 LISGSSKLGKYTESLRFFEDMVDSKVSSTKEVYSSLIYSYIKQGKLSEAESTFSSMKKSG 463
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + ++ +Y R ++M+ +GIP ++++ CS++M +
Sbjct: 464 CFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIP-----PDAII--CSSLM---EAF 513
Query: 315 NSNDFPLSILELTEVLNEEEV 335
N P +L+L E + ++ +
Sbjct: 514 NKGGEPERVLQLMEFMKKKSI 534
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 65/132 (49%)
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+++A L +++ S+ ++I+GLC++G+ EA+ EM K L P Y
Sbjct: 506 NSFASLINSIHNVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDT 565
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I+ + + G + R++ ME +G N ++ G +N++ + +MK+ G
Sbjct: 566 FIWSFCKQGKISSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKG 625
Query: 290 IPFSVRTYNSVL 301
I + TYN+++
Sbjct: 626 ISPDICTYNNII 637
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 114/255 (44%), Gaps = 23/255 (9%)
Query: 118 IAFLDKQGQREEAETLI--LETLSKLGSRERELVLFYCNLIDSFCKHD---SKRGFDDTY 172
I+ L + G+ EA + ++ ++LG +V F ++ FCKH RG +T
Sbjct: 261 ISALCRAGKVMEASRIFRDMQMDAELGLPRPNVVTFNL-MLKGFCKHGMMGDARGLVETM 319
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ + + + GL G+ EA +++EM KG+EP+ + Y ++
Sbjct: 320 KKVGN--------FDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTYNIMMD 371
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G R +L D +++ M +G DTV + +L Y ++ L +M +G
Sbjct: 372 GLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIRNGCQP 431
Query: 293 SVRTYNSVLNSC----STIMS--MLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+ T N++L+S T+ + MLQ +N + + V+N + EL+ +S
Sbjct: 432 NTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVN--GLCRNGELDKASE 489
Query: 347 LDEAMKWDSGETKLD 361
+ M W +G T LD
Sbjct: 490 IVSEM-WTNGPTSLD 503
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 96/240 (40%), Gaps = 19/240 (7%)
Query: 75 NALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET-- 132
+A++H S P LS + PLY + + P V+ + + D R +T
Sbjct: 96 DAITHFKSLRAQFPSLSP-SLPLYNLLLRSTLRHHRPGFVSWL--YSDMLAARVAPQTYT 152
Query: 133 --LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF-------DDTYARLNQLVNSSS 183
L++ +L + + + L LF C ++ G + +LVN+++
Sbjct: 153 FNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLGILVRGLCRAGLVKQALELVNNNN 212
Query: 184 SVYV-KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S + R +++S C +EAE L+E M G+ P + I R G + +
Sbjct: 213 SCRIANRVVYNTLVSRFCREEMNNEAERLVERMNELGVLPDVVTFNSRISALCRAGKVME 272
Query: 243 MERIVNQMESDG----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
RI M+ D R + V N++L + H + ++ MK G S+ YN
Sbjct: 273 ASRIFRDMQMDAELGLPRPNVVTFNLMLKGFCKHGMMGDARGLVETMKKVGNFDSLECYN 332
>gi|356515931|ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Glycine max]
Length = 461
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 86/177 (48%), Gaps = 4/177 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA +++EM V P+ F Y +++ YG +ED +M G
Sbjct: 222 MVDVLCKAGRVDEAVEVVKEMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKG 281
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ D V N ++ ++ N+ + L++M+ +G+ + RT N ++ S+++ Q
Sbjct: 282 IKADVVAYNALIGAFCKVNKFKNVHRVLKEMESNGVAPNSRTCNVII---SSMIGQGQTD 338
Query: 315 NSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMK-WDSGETKLDLHGMHLGSA 370
+ +++L E + ++K + + L+ A+K W ++K + MH SA
Sbjct: 339 RAFRVFCRMIKLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSA 395
>gi|222636666|gb|EEE66798.1| hypothetical protein OsJ_23544 [Oryza sativa Japonica Group]
Length = 665
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 98/220 (44%), Gaps = 37/220 (16%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKH----DSKRGFD 169
II L K GQ EA +E + + R + V+ Y +++ S+C + + K FD
Sbjct: 157 IIHCLVKIGQCGEA----IELFNSMRERRTKCPPDVVTYTSIMHSYCIYGQVENCKAIFD 212
Query: 170 DTYAR--------LNQLVNSSSSVYVKRQALK------------------SMISGLCEMG 203
A N L+ + +S + R+AL S+++
Sbjct: 213 LMVAEGVKPNIVAYNSLLGAYASRGMHREALAIFNLIKKNGLRPDIVSYTSLLNAYGRSA 272
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
QP +A + +M+ +P+ Y +I YG G+L++ ++++ME DG + D V +
Sbjct: 273 QPEKAREVFNKMKKNSCKPNKVSYNALIDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L++ G +++R+ L+ + GI + YNS + S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKS 372
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EAE+ M+ G P Y +I Y G + + +ME +G D +
Sbjct: 435 GKLSEAESTFSSMKKSGCFPDVLTYTTLIQAYNAGGGWKRAWDLFKEMEVNGIPPDAIIC 494
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNS 316
+ ++ ++ E R++ ++ MK IP + ++Y ++ SC+ I M++ L+S
Sbjct: 495 SSLMEAFNKGGEPERVLQLMEFMKKKSIPLNQKSYFEIIASCTMIRDWKTASEMIEYLDS 554
Query: 317 NDFPLSILELTEVLN 331
+ +S+ L VLN
Sbjct: 555 SLSSISVGTLNHVLN 569
Score = 42.0 bits (97), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 10/206 (4%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P +VA ++ +G EA I + K G R ++ Y +L++++ +
Sbjct: 221 PNIVAYNSLLGAYASRGMHREA-LAIFNLIKKNGLRPD--IVSYTSLLNAYGRSAQPEKA 277
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ + ++ + NS V AL I G EA L+ EM G++P
Sbjct: 278 REVFNKMKK--NSCKPNKVSYNAL---IDAYGSAGMLKEAVGLLHEMEKDGIQPDVVSIS 332
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ GR + +E I+ S G ++TV N + SY + + + M++S
Sbjct: 333 TLLAACGRCRQITRIETILEAARSRGIDLNTVAYNSGIKSYLSFGDYEKALELYTSMRES 392
Query: 289 GIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ TYN +++ S + + L
Sbjct: 393 NVKPDAVTYNILISGSSKLGKYTESL 418
>gi|125542133|gb|EAY88272.1| hypothetical protein OsI_09727 [Oryza sativa Indica Group]
Length = 450
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/245 (21%), Positives = 108/245 (44%), Gaps = 15/245 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + ++ W++ + A ++ L K Q A L LS+ R + V Y
Sbjct: 72 ALEIFELLRKQQWYKPRSQTYARLLMMLGKCRQPGAATALFKVMLSE---RLKPTVDVYT 128
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
L+ ++ D+ A + Q+ + +I+ ++ + +++
Sbjct: 129 ALVGAYGYSGL---LDEALATVEQM-KGVADCKPDEYTFSVLINCCSKLRRFDRIPAILD 184
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDH 272
EM GL+ + + II GYG+ G+LE+ME + M DG V D N ++ +YG+H
Sbjct: 185 EMSYLGLQCNAVIHNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNH 244
Query: 273 -NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IMSMLQDLNSNDFPLSILE 325
N + M W + + G+ +T+N ++ S +MS+L+ + + F +++
Sbjct: 245 GNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVT 304
Query: 326 LTEVL 330
++
Sbjct: 305 FNIII 309
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E M+++G++P+ Y ++ GY + G L+ + I+ Q E+
Sbjct: 308 IIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTD 367
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+DT N V+ +Y ++ M LQ MK+ TY +++ +
Sbjct: 368 VVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQA 416
Score = 44.7 bits (104), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
IL+ +S LG + ++ + +ID + K ++ + + +S +Y +
Sbjct: 182 ILDEMSYLGLQCNAVI--HNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYT----MN 235
Query: 194 SMISGLCEMG-QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
S+I G + HE E E ++ G+EP + +I YG + + M ++ M+
Sbjct: 236 SIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKK 295
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
V N+++ S+G + +M + + MK G+ + TY S++N S
Sbjct: 296 HFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYS 348
>gi|357431252|gb|AET78303.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 78/156 (50%), Gaps = 6/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID + K S +D L ++++ V ++ +++GLC+ G+ EA
Sbjct: 6 VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEA 60
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + R GL + Y +I G G++G +++ ER+ +M G D+ C N ++ +
Sbjct: 61 LDYFKTXRFNGLAINSXFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 120
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
+ H +++ + ++M ++ G +V TY +++
Sbjct: 121 FTKHGKVNEALALFKRMEEEEGCDQTVYTYTILISG 156
>gi|115450301|ref|NP_001048751.1| Os03g0115300 [Oryza sativa Japonica Group]
gi|113547222|dbj|BAF10665.1| Os03g0115300 [Oryza sativa Japonica Group]
Length = 442
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 126/290 (43%), Gaps = 23/290 (7%)
Query: 49 AVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
V+R + AASR S + P+ + L AL ++ P A ++ + ++ W++
Sbjct: 35 GVSRKAAAASRQHSTRLW--PRAV-LEALDSAVASCRWEP-----ALEIFELLRKQQWYK 86
Query: 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
+ A ++ L K Q A L LS+ R + V Y L+ ++
Sbjct: 87 PRSQTYARLLMMLGKCQQPGAATALFKVMLSE---RLKPTVDVYTALVGAYGYSGL---L 140
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D A + Q+ + +I+ ++ + +++EM GL+ + +
Sbjct: 141 DQALATVEQM-KGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHN 199
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDH-NELSRMVLWLQKMK 286
II GYG+ G+LE+ME + M DG V D N ++ +YG+H N + M W + +
Sbjct: 200 AIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQ 259
Query: 287 DSGIPFSVRTYNSVLNSCST------IMSMLQDLNSNDFPLSILELTEVL 330
G+ +T+N ++ S +MS+L+ + + F +++ ++
Sbjct: 260 LMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIII 309
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E M+++G++P+ Y ++ GY + G L+ + I+ Q E+
Sbjct: 308 IIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTD 367
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+DT N V+ +Y ++ M LQ MK+ TY +++ +
Sbjct: 368 VVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQA 416
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
IL+ +S LG + ++ + +ID + K ++ + + +S +Y +
Sbjct: 182 ILDEMSYLGLQCNAVI--HNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYT----MN 235
Query: 194 SMISGLCEMG-QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
S+I G + HE E E ++ G+EP + +I YG + + M ++ M+
Sbjct: 236 SIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKK 295
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
V N+++ S+G + +M + + MK G+ + TY S++N S
Sbjct: 296 HFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYS 348
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 94/203 (46%), Gaps = 10/203 (4%)
Query: 101 ITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+ E S + P +V +I+FL ++G E A +L+ + K G L Y ++ +
Sbjct: 284 MAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAME-VLDQIPKYGCTPNSLS--YNPILHA 340
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
FCK ++ D A + +V S Y + ++++ LC G+ A L+ +++ K
Sbjct: 341 FCK---QKKMDRAMAFVELMV--SRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDK 395
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G P Y +I G + G ++ ++N+M + G + D + + + S + +
Sbjct: 396 GCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEA 455
Query: 279 VLWLQKMKDSGIPFSVRTYNSVL 301
+ K++D GI + YN++L
Sbjct: 456 IRAFCKVQDMGIRPNTVLYNAIL 478
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +AE L+ EM KG P+ + +I R GL+E +++Q+ G
Sbjct: 267 VLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYG 326
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ N +L ++ ++ R + +++ M G + +YN++L +
Sbjct: 327 CTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTA 375
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 48/108 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ C+ +A L++EMR KG P Y ++ G + G ++D + + S G
Sbjct: 197 LLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHG 256
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+TV N+VL + +M G P +V T+N +++
Sbjct: 257 CEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLIS 304
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +M++G C GQ A L+ +M +EP + Y +I G G + +++ M
Sbjct: 126 AYNAMVAGYCVTGQLDAARRLVADMP---MEPDSYTYNTLIRGLCGRGRTGNALVVLDDM 182
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V ++L + + + + L +M+ G + TYN V+N
Sbjct: 183 LRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235
Score = 42.7 bits (99), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G A +++++ G P+ Y I++ + + ++ V M S G
Sbjct: 302 LISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRG 361
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +L++ E+ V L ++KD G + +YN+V++
Sbjct: 362 CYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 410
>gi|224576641|gb|ACN56994.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 83/171 (48%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALXKHGKVDEAMXLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.4 bits (98), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 54/101 (53%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G+ + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGLAINSXFYSSLIDG 101
>gi|449463623|ref|XP_004149531.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g59040-like [Cucumis sativus]
Length = 580
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 96/213 (45%), Gaps = 15/213 (7%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGS--RERELVLFYCNLIDSFCK--H 162
F+ N K V++I + + G + + + L +S G RE E + + ++D+ + H
Sbjct: 290 FETNYKEVSKIYDQMQRAGLQPDVVSYAL-LISAYGKARREEEALAVFEEMLDAGIRPTH 348
Query: 163 DSKRGFDDTYARLNQLVNSSSSVY--VKRQ-------ALKSMISGLCEMGQPHEAENLIE 213
+ D +A ++ +V + V+ +KR + +M+S AEN
Sbjct: 349 KAYNILLDAFA-ISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFR 407
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
++ G P+ Y +I GY ++ LE M + +M+ +G RV+ ++ +YG +
Sbjct: 408 RLKQDGFRPNVVTYGTLIKGYAKINNLEKMIKRYEEMKVNGIRVNQTILTTIMDAYGKNK 467
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ V+W +++ G+ + N +L+ T
Sbjct: 468 DFGSAVIWFNEIESCGLRPDQKAKNILLSLAKT 500
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/198 (17%), Positives = 82/198 (41%), Gaps = 15/198 (7%)
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
K+ II K G E+A + E ++ + + ++S F+
Sbjct: 247 KMFHMIIYMFKKAGNYEKARKVFAEMAAR-------------GVPQTTVTYNSLMSFETN 293
Query: 172 YARLNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
Y ++++ + ++ + +IS + + EA + EEM G+ P+ Y
Sbjct: 294 YKEVSKIYDQMQRAGLQPDVVSYALLISAYGKARREEEALAVFEEMLDAGIRPTHKAYNI 353
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++ + G++E + + M+ D D +LS+Y + +++ + +++K G
Sbjct: 354 LLDAFAISGMVEQAKIVFKSMKRDRCSPDICSYTTMLSAYVNASDMEGAENFFRRLKQDG 413
Query: 290 IPFSVRTYNSVLNSCSTI 307
+V TY +++ + I
Sbjct: 414 FRPNVVTYGTLIKGYAKI 431
>gi|357431224|gb|AET78289.1| At1g03560-like protein [Arabidopsis halleri]
gi|357431228|gb|AET78291.1| At1g03560-like protein [Arabidopsis halleri]
Length = 161
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 77/156 (49%), Gaps = 6/156 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID + K S +D L ++++ V ++ +++GLC+ G+ EA
Sbjct: 6 VAIYTVLIDGYAKSGS---VEDAIRLLQRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEA 60
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + R GL + Y +I G G++G +++ ER+ +M G D+ C N ++ +
Sbjct: 61 LDYFKTCRFNGLAINSMFYSSLIDGLGKVGRVDEAERLFEEMSEKGCTRDSYCYNALIDA 120
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
+ H ++ + ++M ++ G +V TY +++
Sbjct: 121 FTKHGKVDEALALFKRMEEEEGCDQTVYTYTILISG 156
>gi|326520119|dbj|BAK03984.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 485
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++M +G +P+ F Y +++ YG +ED M+ DG
Sbjct: 246 MVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHTYGVEMRIEDAVATFLDMQKDG 305
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D V N +++++ + + M+ GI + RT+N +LN
Sbjct: 306 IVPDVVVYNALVTAFCKVKKFDNAFRVMDDMEGHGITPNSRTWNIILN 353
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 50/113 (44%), Gaps = 1/113 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A S++ LC+ +A+ + E+M + P Y ++ G+GR L M ++ + M
Sbjct: 173 AFNSLLCALCKSKNVRKAQEIFEQMNGR-FSPDAKTYSILLEGWGRAPNLPKMRKVYSDM 231
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V +++ S + V +Q M G + Y+ ++++
Sbjct: 232 LDAGCQPDIVTYGIMVDSLCKTGRVEEAVFVVQDMTSRGCQPTTFIYSVLVHT 284
>gi|297737955|emb|CBI27156.3| unnamed protein product [Vitis vinifera]
Length = 625
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
++G E+AE I E L + G V Y L++++ S+ GF A + L+
Sbjct: 358 REGLCEKAEE-IFEQLQEAGLEPD--VYAYNALMEAY----SRAGFPYGAAEIFSLMQHM 410
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
R + M+ G +A+ + E M+ G+ P+ + ++ Y R G +
Sbjct: 411 GCE-PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 469
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E IVNQM G + DT N +L+ YG + +M L M+ P + TYN ++N
Sbjct: 470 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 529
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S G+ + E ++ +M G++P F ++ YGRLG E ME ++ ME
Sbjct: 457 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 516
Query: 255 TRVDTVCSNMVLSSYGDHNELSRM 278
D N++++ YG +RM
Sbjct: 517 YPADISTYNILINIYGRAGFFARM 540
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
GLCE +AE + E+++ GLEP + Y ++ Y R G I + M+ G
Sbjct: 360 GLCE-----KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 414
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D N+++ +YG + MK GI +++++ +L++ S
Sbjct: 415 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYS 462
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++ + + + TY L + + ++ C G +A
Sbjct: 206 VICYNLLIDAYGQKSLYKKAESTYLELLE-----ARCVPTEDTYALLLKAYCTSGLLEKA 260
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E + EMR G PS Y I G + G + I +M+ D + T M+++
Sbjct: 261 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 320
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
YG ++ + +M+ ++ T+ +++N+
Sbjct: 321 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 355
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 173 ARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE-YKC 229
A+ ++VN S + L SM++ +GQ + E ++ M KG P+ Y
Sbjct: 468 AKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADISTYNI 526
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I YGR G ME + + + D V + +Y + +R + ++M D+G
Sbjct: 527 LINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAG 586
Query: 290 IPFSVRTYNSVLNSCS 305
T +L++CS
Sbjct: 587 CYPDGGTAKVLLSACS 602
>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Glycine max]
Length = 456
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 70/155 (45%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID CK D Y+ +N + ++ ++I G C GQ A
Sbjct: 192 VVMYNTIIDGLCKDKLVNEAYDFYSEMN-----ARGIFPNVITYTTLIGGFCLAGQLTGA 246
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L+ EM +K + P+ + Y +I + G +++ + ++ +M G D V +L
Sbjct: 247 FSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDG 306
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L + KMK+ GI + TY ++++
Sbjct: 307 FCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDG 341
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 92/192 (47%), Gaps = 28/192 (14%)
Query: 110 NPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP + A +I L K+G+ +EA+ L+ E + + V+ Y +L+D FCK
Sbjct: 259 NPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPAD---VVTYTSLLDGFCK------ 309
Query: 168 FDDTYARLNQLVNSSSSVYVK---------RQALKSMISGLCEMGQPHEAENLIEEMRVK 218
NQ ++ ++++++K + ++I GLC+ G+ +A+ L +++ VK
Sbjct: 310 --------NQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVK 361
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G Y +I G + G+L++ I ++ME +G + V +++ S +E +
Sbjct: 362 GCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKA 421
Query: 279 VLWLQKMKDSGI 290
L +M G+
Sbjct: 422 EKLLHEMIAKGL 433
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLI 156
++R+ E+S N + II L K EA + S++ +R V+ Y LI
Sbjct: 179 FLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEA----YDFYSEMNARGIFPNVITYTTLI 234
Query: 157 DSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
FC G ++ LN+++ N + +VY +I LC+ G+ EA+NL+ E
Sbjct: 235 GGFCLAGQLTG---AFSLLNEMILKNINPNVY----TYAILIDALCKEGKVKEAKNLLAE 287
Query: 215 MRVKG-----------------------------------LEPSGFEYKCIIYGYGRLGL 239
M +G ++P+ + Y +I G + G
Sbjct: 288 MHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGR 347
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
L+D +++ + G +D N+++ L + KM+D+G +V T+
Sbjct: 348 LKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEI 407
Query: 300 VLNS 303
++ S
Sbjct: 408 IIRS 411
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDDTY 172
+I L K G+ EA L + +K + + V+ Y LI FCK + ++ FDD
Sbjct: 447 LIDGLCKTGRAPEANRLFGDMKAKFCNPD---VITYSCLIGGFCKLERIDMARTLFDDM- 502
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
L Q V + +++ G C G +AE L+EEM P + Y ++
Sbjct: 503 --LKQAVLPDVVTF------STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 554
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ ++G + + R++ +M G + + V ++ ++ + + L++M +G+
Sbjct: 555 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQP 614
Query: 293 SVRTYNSVLNS-CST 306
+V TY S++ C T
Sbjct: 615 NVITYRSLIGGFCGT 629
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G ++AE L+ E ++ S + V Y +L+D FCK R+ + +
Sbjct: 525 GLVDDAERLLEEMVASDCSPD---VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 581
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V ++I C G+P A L+EEM G++P+ Y+ +I G+ G LE+
Sbjct: 582 V-----TYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 636
Query: 245 RIVNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+I+ ++E D + D +++ +S + L+ +K SG P
Sbjct: 637 KILERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTP 684
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 112/241 (46%), Gaps = 18/241 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C++ + H A L++EM+ GL P+ Y +I+G+ R ++ ++ QM +G
Sbjct: 167 LINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENG 226
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
+ V N +LS + + L +M++ G+ +Y++++ C T +
Sbjct: 227 CMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMAL 286
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLD-----LH 363
+ +D ++ D P ++ + ++ + L+++ L E M+ +S E + +
Sbjct: 287 KVFEDNSNGDCPPDVVAYSTLI--AGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMD 344
Query: 364 GMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMV 423
G+ G Q ++ M +R N +VI +++ G K VR V K+M+V
Sbjct: 345 GLCKGDRLQEAQQVLETMEDR-NCTPNVITYS-SLIDGLCKTGQVRDAQEV---FKRMIV 399
Query: 424 R 424
R
Sbjct: 400 R 400
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 87/231 (37%), Gaps = 34/231 (14%)
Query: 114 VAEIIAFLDK--QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V A +D +G R + +LET+ V+ Y +LID CK R +
Sbjct: 336 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN--VITYSSLIDGLCKTGQVRDAQEV 393
Query: 172 YARL------------NQLVNSSSSVYVKRQAL------------------KSMISGLCE 201
+ R+ N L++ AL ++I GLC+
Sbjct: 394 FKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCK 453
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G+ EA L +M+ K P Y C+I G+ +L ++ + + M D V
Sbjct: 454 TGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVT 513
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ ++ Y + + L++M S V TY S+++ + M++
Sbjct: 514 FSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVE 564
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI CK D+ ++ +S V +++ GLC+ + EA
Sbjct: 301 VVAYSTLIAGLCKAGR---LDEACKLFEKMRENSCEPDV--VTFTALMDGLCKGDRLQEA 355
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++E M + P+ Y +I G + G + D + + +M G + V N ++
Sbjct: 356 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 415
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ N + +L +++M +G + TYN++++ C T
Sbjct: 416 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 454
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 60/141 (42%), Gaps = 32/141 (22%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY---------------------- 232
+I GLC+ G +A L+EEMR G P Y +I+
Sbjct: 65 VIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEK 124
Query: 233 ----------GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
G + L + +M+ GT + N++++ + +++ R L L
Sbjct: 125 NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 184
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
++MK+SG+ +V TY++V++
Sbjct: 185 KEMKESGLAPNVVTYSTVIHG 205
>gi|357502007|ref|XP_003621292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124360248|gb|ABN08261.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355496307|gb|AES77510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 738
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/310 (21%), Positives = 126/310 (40%), Gaps = 47/310 (15%)
Query: 128 EEAETLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYA 173
E T++++ L K G E + +F Y I+ CK++ D YA
Sbjct: 225 EYTYTIVIKALCKKGDWENVVRVFDEMKEAGVDDDSYCYATFIEGLCKNNRS---DLGYA 281
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L + + +V + A ++I G C + EAE++ EM +GL P + Y +++G
Sbjct: 282 VLQDY--RTRNAHVHKYAYTAVIRGFCNETKLDEAESVFLEMEKQGLVPDVYVYCALVHG 339
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + + M S G + + V + +L + +V ++ K+SG+
Sbjct: 340 YCNSRNFDKALAVYKSMISRGIKTNCVIFSCILHCLDEMGRALEVVDMFEEFKESGLFID 399
Query: 294 VRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILELTEVLNE--------EEVSVVK 339
+ YN + ++ + + ML +L S + + T ++N E S+ K
Sbjct: 400 RKAYNILFDALCKLGKVDDAVGMLDELKSMQLDVDMKHYTTLINGYFLQGKPIEAQSLFK 459
Query: 340 ELEDSSVLDEAMKWD---SG--ETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPA 394
E+E+ + + ++ +G + D M L L +M+ N+ H I
Sbjct: 460 EMEERGFKPDVVAYNVLAAGFFRNRTDFEAMDL-------LNYMESQGVEPNSTTHKIII 512
Query: 395 EITVVCGSGK 404
E +C +GK
Sbjct: 513 E--GLCSAGK 520
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 72/193 (37%), Gaps = 18/193 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCK-------HDSKRGF 168
II L G+ EEAE E + L E+ V Y L++ +C+ H+ K F
Sbjct: 511 IIEGLCSAGKVEEAE----EFFNWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEAF 566
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
L + S +Y K + + LC G A L G P Y
Sbjct: 567 ILLRTMLEMNMKPSKVMYSK------IFTALCCNGNMEGAHTLFNLFIHTGFTPDAVTYT 620
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I GY + L + + M+ G D V ++++ Y N L + MK+
Sbjct: 621 IMINGYCKTNCLPEAHELFKDMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKER 680
Query: 289 GIPFSVRTYNSVL 301
GI V Y ++
Sbjct: 681 GIKPDVIAYTVII 693
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/235 (18%), Positives = 100/235 (42%), Gaps = 27/235 (11%)
Query: 53 DSKAASRLISKFVASSPQFIALNALSHL----LSPDTTHPRLSSLAFPLYMRITE-ESWF 107
D A + L + F + F A++ L+++ + P++T ++ ++ E E +F
Sbjct: 469 DVVAYNVLAAGFFRNRTDFEAMDLLNYMESQGVEPNSTTHKIIIEGLCSAGKVEEAEEFF 528
Query: 108 QWNPKLVAEI--------------IAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
W EI A ++K + +EA ++L T+ ++ + +++ Y
Sbjct: 529 NWLKGESVEISVEIYTALVNGYCEAALIEKSHELKEA-FILLRTMLEMNMKPSKVM--YS 585
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+ + C + + G + N +++ + + MI+G C+ EA L +
Sbjct: 586 KIFTALCCNGNMEG---AHTLFNLFIHTGFTPDAVTYTI--MINGYCKTNCLPEAHELFK 640
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+M+ +G+ P Y +I GY ++ L + + M+ G + D + +++
Sbjct: 641 DMKERGITPDAVTYTIMINGYCKMNCLREAHELFKDMKERGIKPDVIAYTVIIKG 695
>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
Length = 791
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 90/195 (46%), Gaps = 10/195 (5%)
Query: 110 NPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
+P +V + IIA L K GQ + +L T+ K G + Y +++ +C + +
Sbjct: 228 SPDVVTYSSIIAALCK-GQAMDKAMEVLTTMVKNGVMPN--CMTYNSILHGYCSSEQPK- 283
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ L ++ S V S++ LC+ G+ EA + + M +GLEP Y
Sbjct: 284 --EAIGFLKKM--RSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATY 339
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++ GY G L +M +++ M +G D N+++ +Y ++ +L KM+
Sbjct: 340 CTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQ 399
Query: 288 SGIPFSVRTYNSVLN 302
G+ +V TY +V+
Sbjct: 400 HGLNPNVVTYGAVIG 414
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 94/198 (47%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP +V +I L K G ++A E +I E L+ ++ Y +LI S C D
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPN-------IIVYTSLIHSLCIFD 455
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P+
Sbjct: 456 K---WDKAEELILEMLDRG--ICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPN 510
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ ++++ M S G + D V N +++ Y + + + +
Sbjct: 511 VITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFK 570
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M SG+ ++ TYN +L
Sbjct: 571 EMVSSGVSPNIITYNIIL 588
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI L ++G+ EA++L GL P+ + Y+ + GLLE+++++ ME +G
Sbjct: 657 MIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNG 716
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWL 282
VD+ N ++ E++R +L
Sbjct: 717 CTVDSGMLNFIVRELLQRGEITRAGTYL 744
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 82/186 (44%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---KHDSKRGFDDTYARLNQLV 179
K+G+ E+E L + + ++G + V+ Y LID +C K D +L+
Sbjct: 488 KEGRVIESEKL-FDLMVRIGVKPN--VITYSTLIDGYCLAGKMDEA----------TKLL 534
Query: 180 NSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+S SV +K + ++I+G C + + +A L +EM G+ P+ Y I+ G
Sbjct: 535 SSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHT 594
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + + GT+++ N++L +N + Q + + + RT+
Sbjct: 595 RRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 654
Query: 298 NSVLNS 303
N ++ +
Sbjct: 655 NIMIGA 660
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G + G +A + EM + + P Y II + ++ ++ M +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKN 260
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + + N +L Y + + +L+KM+ G+ V TYNS+++
Sbjct: 261 GVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMD 309
>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Brachypodium distachyon]
Length = 547
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC++G +A + +EM KG+EP+ + Y + Y + G + ++ +M
Sbjct: 279 TVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVYGEMLGK 338
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N++L+ + H + + + M GI V TYN+++
Sbjct: 339 GFKESTVSCNIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQG 388
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 64/291 (21%), Positives = 114/291 (39%), Gaps = 28/291 (9%)
Query: 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLL-----SPD 84
C R G R L A + S AA+ + K A+S F ++ HL+ PD
Sbjct: 179 CAADRRPLDGLRLLRDAARRGSPPSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPD 238
Query: 85 TT------HPRLSSLAFPLYMRITEE---SWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135
T H + +R+ E + + +I L K G +A +
Sbjct: 239 TVVYQCIIHGLFAHKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWD 298
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSVYVKRQAL 192
E + K G E YC+ + +CK FD Y +++ S+V +
Sbjct: 299 EMVHK-GMEPNEYA--YCSFLGYYCKAGD---FDMAYKVYGEMLGKGFKESTV-----SC 347
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++G C + EA ++ E M +G+E F Y +I G ++G L + R+ ++ S
Sbjct: 348 NIILAGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRLLS 407
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G ++ + + ++ V + M+ G VR+ +SV+N
Sbjct: 408 SGLEPTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVING 458
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 10/191 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKHDSKRGFDDTYARL 175
+ + K G + A + E L K G +E + CN+I FC H D+ +
Sbjct: 315 FLGYYCKAGDFDMAYKVYGEMLGK-GFKESTV---SCNIILAGFCVH---MRVDEAISVF 367
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+V + + ++I GLC++G+ EA + + + GLEP+ + +I
Sbjct: 368 EGMV--TEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRLLSSGLEPTVSTFTPLIDTMC 425
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G ++ + M++ G ++ V++ + + WL M S + +
Sbjct: 426 EEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARRADDAMAWLAGMLKSNLKPQKQ 485
Query: 296 TYNSVLNSCST 306
T+NS+L ST
Sbjct: 486 TFNSLLELLST 496
>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 539
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 30/179 (16%)
Query: 155 LIDSFCKHDS------------KRGFDDTYARLNQLVNS---SSSV---------YVKRQ 190
LID CK KRG+ N L+N S SV V+R
Sbjct: 287 LIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERT 346
Query: 191 ALKSMIS------GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
AL ++IS G C++ EA L+ EM K L P Y C++ G + G
Sbjct: 347 ALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEW 406
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+V M + G D + N++L Y H + + + Q + + GI ++RTYN +L+
Sbjct: 407 DLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDG 465
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 94/213 (44%), Gaps = 10/213 (4%)
Query: 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF L I + FQ + +++ ++ L +G+ EA +L+ E + + G R E+
Sbjct: 122 GFAFSLLGNILKMG-FQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDR-GFRFDEVC-- 177
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I+ CK R + ++ ++ VY ++I GLC+ G EA L
Sbjct: 178 YGTIINGLCKIGKTRDAIQMFPKMKKI-----RVYPNLIMYNTVIDGLCKQGLVDEACGL 232
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRVDTVCSNMVLSSYG 270
EM G+E + Y +I+G+ +G + +++++M G D N+++
Sbjct: 233 CTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLC 292
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S + M G + +YN+++N
Sbjct: 293 KLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNG 325
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 88/198 (44%), Gaps = 11/198 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-YCNLIDSFCKHDSKRG 167
P L+ +I L KQG +EA L E + EL ++ Y ++I FC S
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMVEN----GIELDVYSYNSMIHGFC---SVGR 260
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
F L+++V VY +I GLC++G+ EA N++ M +G +P Y
Sbjct: 261 FQAAVKLLDEMV-VRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSY 319
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++ GY G + + +++ ++M + + +++ Y + ++ L +M +
Sbjct: 320 NALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHN 379
Query: 288 SGIPFSVRTYNSVLNSCS 305
+ TYN +L+ S
Sbjct: 380 KNLVPDTVTYNCLLDGLS 397
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 52/102 (50%), Gaps = 5/102 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D + KH+ FD A ++ S ++ + ++ GLC+ G+ A+ +
Sbjct: 424 YNVLLDDYFKHEK---FDKALALFQHIIEIGISPNIRTYNI--LLDGLCKSGRLKYAKEI 478
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ + KG +P+ Y +I+G + G L++ E ++ +M ++
Sbjct: 479 FQLLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNN 520
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 64/144 (44%), Gaps = 6/144 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I C+ GQP EA L +M G P+ + +I+G G D+ +V +M S
Sbjct: 462 SLIDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRSK 521
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTI 307
G + V ++ Y V LQ MK+ G+ S Y+++ N+ C
Sbjct: 522 GMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANAYAQLGMCEQT 581
Query: 308 MSMLQDLNSNDFPLSILELTEVLN 331
+ +LQ + + +++ L ++N
Sbjct: 582 LHVLQTMEKENIEINLAMLNLLIN 605
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + R + S++ L + G+ EAE L+EEM+ GL P+ Y ++ GY R G L+
Sbjct: 275 ASGLVADRDSYISLMLSLGKHGRTAEAEALLEEMKWYGLRPNLKAYNTLLGGYSRKGQLQ 334
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
++ + + G ++ + +++ +Y + R+ Q+M+D I
Sbjct: 335 QIDTVKTLLRDTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDI 383
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K G+ EAE L LE + G R + Y L+ + + + D L
Sbjct: 292 LGKHGRTAEAEAL-LEEMKWYGLRPN--LKAYNTLLGGYSRKGQLQQIDTVKTLLR---- 344
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ + + + +I G E L +EMR + P+ + Y +I Y G
Sbjct: 345 -DTGMSINKITYCLLIDAYARAGLMDRLEALYQEMRDCDIRPNTYMYARMITIYRDTGQW 403
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ +++ +M+ G D N++++++G +L + + KM+D GI V ++NS+
Sbjct: 404 QKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWNSL 463
Query: 301 LNSC 304
+++C
Sbjct: 464 IDAC 467
Score = 45.1 bits (105), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + +LID+ CK Y ++ VN + Q +I GL E + ++
Sbjct: 457 VVSWNSLIDACCKAGQPLEARKLYYKM---VNDGCAPTA--QTFNIVIHGLGEHKRWNDV 511
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++EEMR KG+ P+ Y ++ Y + L +D + M+ DG + + ++
Sbjct: 512 NEMVEEMRSKGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGPSPTAYSALANA 571
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y + + LQ M+ I ++ N ++N+ S
Sbjct: 572 YAQLGMCEQTLHVLQTMEKENIEINLAMLNLLINAFS 608
>gi|413944457|gb|AFW77106.1| hypothetical protein ZEAMMB73_510937 [Zea mays]
Length = 492
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 96/221 (43%), Gaps = 11/221 (4%)
Query: 87 HPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG 142
H R+++L A ++ + ++ W++ + + ++I L K Q E+A L + +
Sbjct: 113 HDRVAALRWDSALKVFELMRDQVWYKPHIGIYIKLITMLGKCKQPEKAHQLFQAMIDEGC 172
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
+ + Y L+ ++ + R D R+ V Q +I
Sbjct: 173 APNLQ---SYTALVSTYSRSGRFREAFDLLDRMKDTPGCQPDV----QTYSILIKSCLHA 225
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
+ ++L+ +M G+ P+ Y +I YG+ G +ME + +M S + D
Sbjct: 226 YDFEKVKSLLADMARAGIPPNTVTYNTLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTM 285
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N L ++G ++ M +K + SGI +++TYN +L+S
Sbjct: 286 NSTLRAFGSSGQIETMESCYEKFQASGIVPNIKTYNILLDS 326
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/110 (20%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I + G+ E E+ + +M + +P + + +G G +E ME + ++
Sbjct: 252 TLIDAYGKAGRFAEMESTLLKMLSQNCKPDVWTMNSTLRAFGSSGQIETMESCYEKFQAS 311
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + N++L SYG +M ++ M+ +++ TYN V+++
Sbjct: 312 GIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDA 361
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%)
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I +GR G LE ME I M+S+ + + V V+ +YG E+ ++ L+ ++
Sbjct: 355 YNVVIDAFGRAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIE 414
Query: 287 DSGIPFSVRTYNSVLNS 303
+S I + +N ++++
Sbjct: 415 NSDITLDIVFFNCLVDA 431
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 77/180 (42%), Gaps = 13/180 (7%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID++ K + T + L+Q N V+ L++ S GQ E+
Sbjct: 250 YNTLIDAYGKAGRFAEMESTLLKMLSQ--NCKPDVWTMNSTLRAFGSS----GQIETMES 303
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
E+ + G+ P+ Y ++ YG+ + E M ++ M+ V N+V+ ++G
Sbjct: 304 CYEKFQASGIVPNIKTYNILLDSYGKAKMYEKMGAVMEYMQKYYYSWTIVTYNVVIDAFG 363
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLSIL 324
+L +M + MK I + T SV+ + I + L+ + ++D L I+
Sbjct: 364 RAGDLEQMEYIFRLMKSERIKPNCVTLCSVVRAYGRAGEVKKIKTALRIIENSDITLDIV 423
>gi|27476102|gb|AAO17033.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705848|gb|ABF93643.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|125584686|gb|EAZ25350.1| hypothetical protein OsJ_09164 [Oryza sativa Japonica Group]
Length = 450
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/290 (22%), Positives = 126/290 (43%), Gaps = 23/290 (7%)
Query: 49 AVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
V+R + AASR S + P+ + L AL ++ P A ++ + ++ W++
Sbjct: 35 GVSRKAAAASRQHSTRLW--PRAV-LEALDSAVASCRWEP-----ALEIFELLRKQQWYK 86
Query: 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
+ A ++ L K Q A L LS+ R + V Y L+ ++
Sbjct: 87 PRSQTYARLLMMLGKCQQPGAATALFKVMLSE---RLKPTVDVYTALVGAYGYSGL---L 140
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D A + Q+ + +I+ ++ + +++EM GL+ + +
Sbjct: 141 DQALATVEQM-KGVADCKPDEYTFSVLINCCSKLRRFDRIPAILDEMSYLGLQCNAVIHN 199
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDH-NELSRMVLWLQKMK 286
II GYG+ G+LE+ME + M DG V D N ++ +YG+H N + M W + +
Sbjct: 200 AIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYTMNSIIWAYGNHGNRIHEMERWYSEFQ 259
Query: 287 DSGIPFSVRTYNSVLNSCST------IMSMLQDLNSNDFPLSILELTEVL 330
G+ +T+N ++ S +MS+L+ + + F +++ ++
Sbjct: 260 LMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKKHFFSPTVVTFNIII 309
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E M+++G++P+ Y ++ GY + G L+ + I+ Q E+
Sbjct: 308 IIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYSKAGFLDKVPGIIRQTENTD 367
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+DT N V+ +Y ++ M LQ MK+ TY +++ +
Sbjct: 368 VVLDTPFFNCVIDAYAKSGDIKIMEEMLQLMKEKKCKPDKVTYTTMIQA 416
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
IL+ +S LG + ++ + +ID + K ++ + + +S +Y +
Sbjct: 182 ILDEMSYLGLQCNAVI--HNAIIDGYGKAGMLEEMENALTSMLEDGDSVPDIYT----MN 235
Query: 194 SMISGLCEMG-QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
S+I G + HE E E ++ G+EP + +I YG + + M ++ M+
Sbjct: 236 SIIWAYGNHGNRIHEMERWYSEFQLMGVEPDTQTFNIMIKSYGNAKMHDKMMSVLKYMKK 295
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
V N+++ S+G + +M + + MK G+ + TY S++N S
Sbjct: 296 HFFSPTVVTFNIIIESFGRAGNIEKMEYYFRLMKIQGVKPNPITYCSLVNGYS 348
>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Glycine max]
Length = 545
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 31/248 (12%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L K+G+ +EA+ +L + K + V+ Y LID + KH F+ L+
Sbjct: 283 LHKEGKVKEAKN-VLAVIVKTCLKPN--VITYNTLIDGYAKHV----FNAV-----GLMG 330
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ V+ + MI+ LC++ + EA NL +EM K + P+ Y +I G + G +
Sbjct: 331 VTPDVW----SYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRI 386
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++++M G + + N +++ + +L + + + KMKD GI + T N +
Sbjct: 387 SYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNIL 446
Query: 301 LNS--C-----STIMSMLQDL-----NSNDFPLSIL---ELTEVLNEEEVSVVKELEDSS 345
L+ C + QDL + N + +I+ E L +E ++ ++EDS
Sbjct: 447 LHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSG 506
Query: 346 VLDEAMKW 353
A+ +
Sbjct: 507 CSPNAITF 514
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/299 (21%), Positives = 131/299 (43%), Gaps = 25/299 (8%)
Query: 66 ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESW-FQWNPKLVAEIIAFLDKQ 124
A P F LN L + H +LAF + +I + W +Q + + +I L +
Sbjct: 93 AIQPDFFTLNILINCFC----HLGQINLAFSVLSKILK--WGYQPDTVTLTTLIKGLCLK 146
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ ++A + L++ G R ++ Y LI+ CK R R++ + +
Sbjct: 147 GQVKKALHFHDKLLAQ-GFRLDQVS--YGTLINGVCKIGETRAAIQLLRRIDGRLTEPNV 203
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V ++I LC+ EA NL EM VKG+ + Y II+G+ +G L +
Sbjct: 204 V-----MYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEAL 258
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+N+M D N ++ + ++ L + + + +V TYN++++
Sbjct: 259 GFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY 318
Query: 305 ST-------IMSMLQDLNSNDFPLS-ILELTEVLNEEEVSVVKELEDSSVLDEAMKWDS 355
+ +M + D+ S + ++ + ++ V EE +++ KE+ +++ + ++S
Sbjct: 319 AKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRV--EEALNLYKEMHQKNMVPNTVTYNS 375
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL-CEMGQPHE 207
V+ Y +LI+ CK+ D A +N++ + L ++ GL C+ +
Sbjct: 405 VITYNSLINGLCKNGQ---LDKAIALINKM--KDQGIQPDMYTLNILLHGLLCKGKRLKN 459
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A+ L +++ KG P+ + Y IIYG+ + GLL++ + ++ME G + + +++
Sbjct: 460 AQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIIC 519
Query: 268 SYGDHNELSRMVLWLQKMKDSGI 290
+ + E + L +M G+
Sbjct: 520 ALLEKGETDKAEKLLCEMIARGL 542
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +FCK + D LN++ ++ K + +++ ++ H A +L
Sbjct: 233 YSALISAFCKLGRR---DSAIQLLNEMKDNGMQPTTKIYTM--LVALFFKLNDVHGALSL 287
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EEMR + P F Y +I G G+ G +++ +M+ +G R DT+ N +++ G
Sbjct: 288 FEEMRHQYCRPDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINFLGK 347
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + Q+M SV TYN+++ +
Sbjct: 348 AGRLDDAMKLFQEMGTLRCIPSVVTYNTIIKA 379
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 7/130 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K + + L + SSSS + MI L + G+ +A N+
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSS-----RVYAVMIKHLGKAGRLDDAINM 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P + Y ++ G R G+L++ + +M+ G D N++L+
Sbjct: 499 FDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNIILNGLQK 558
Query: 272 HNELSRMVLW 281
+L +V W
Sbjct: 559 QEDL--IVQW 566
>gi|111154024|dbj|BAF02664.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|111185880|dbj|BAF02672.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 531
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%)
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
QP AE+++ EM+ G++P Y +I Y R G L D ERI+ M++ + N
Sbjct: 369 QPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPTVEIYN 428
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M++S Y S+ Q M+D G+ T+N++++
Sbjct: 429 MMISGYASAKMRSQAERMFQTMQDCGLRPDAVTFNTLIS 467
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
G+ + V+ Y LI F K S D ++R+ + + + +IS
Sbjct: 173 GAGLKPDVVSYTALIQGFGKLKSYNKVTDVFSRMQR-----NRCPPDLKLCTVLISTYGN 227
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G P AE+ ++ + +GL+P Y +++ Y + GL E+ E+ ++ M G VD
Sbjct: 228 GGLPVLAESAMQYAQAQGLQPDAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGI-VDDRP 286
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++++YG + L+ MK SG+ S YN+++N
Sbjct: 287 YAALVAAYGKAGLTDNVNKILETMKASGVEASTTLYNTLIN 327
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS C G+ +AE ++ M+ +P+ Y +I GY + ER+ M+ G
Sbjct: 395 LISAYCRAGRLGDAERILRAMQNAKCKPTVEIYNMMISGYASAKMRSQAERMFQTMQDCG 454
Query: 255 TRVDTVCSNMVLSSY 269
R D V N ++S Y
Sbjct: 455 LRPDAVTFNTLISMY 469
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +G +A + ++M G P+ Y II+ Y + G + + R++ M+ +G
Sbjct: 418 IIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNG 477
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++DT ++S + +L +M + GI +V TYN+++N T+
Sbjct: 478 LKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTV 530
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
K+G+ + RL +++ + + + ++ISG G+ A +L EM G+ P+
Sbjct: 459 KQGYMNNAMRLLEMM-KGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNV 517
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y II GY + ++D + +M G + NM++S + N +S + K
Sbjct: 518 VTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRISEAENFCGK 577
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M G+ +V TY S ++
Sbjct: 578 MVKQGLLPNVITYTSFIDG 596
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 82/186 (44%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +G+ +EAE LI+ + G+ Y +LI CK+ + D + +
Sbjct: 208 MIKILCNKGKVQEAE-LIMGHIFHYGACPDTFT--YTSLIIGHCKNGN---LDLAFEMFD 261
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V ++I+GLC G+ EA +++EEM KG+EP+ Y I
Sbjct: 262 RMVKDGCDP--NSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCD 319
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + +++ +M+ G + ++S + + KM G+ + T
Sbjct: 320 AGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVT 379
Query: 297 YNSVLN 302
Y++++N
Sbjct: 380 YSALIN 385
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+MI LC G+ EAE ++ + G P F Y +I G+ + G L+ + ++M
Sbjct: 204 TFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRM 263
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
DG ++V + +++ L + L++M D GI +V Y
Sbjct: 264 VKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAY 310
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 52/107 (48%), Gaps = 17/107 (15%)
Query: 152 YCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y +LID C+ D++R DD + Y +++ GLC G+ +E
Sbjct: 625 YSSLIDGLCQEGQAEDAERLLDDG-------CEPNVDTYT------TLVRGLCGKGRCYE 671
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
A+ L+E M+ KGL+PS Y+ ++ G + +E +I + M + G
Sbjct: 672 ADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTG 718
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 49/103 (47%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G + A L+E M+ GL+ + Y +I G+ R G LE + N+M G + V
Sbjct: 461 GYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTY 520
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
N +++ Y ++ + KM +SG S TYN +++ S
Sbjct: 521 NAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFS 563
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 48/112 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C+ G A + + M G +P+ Y +I G G LE+ ++ +M
Sbjct: 242 SLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDK 301
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + + S D V L KMK G +V+TY ++++ S
Sbjct: 302 GIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLS 353
>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 807
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 8/182 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G EA I E + K G VL Y +I +FC+ S DD + N +++
Sbjct: 398 KCGMVREA-MFIFEDMQKRGLNPD--VLTYLAVIHAFCRMGS---MDDAMDKFNHMIDKG 451
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + +I G C G +AE L+ E+R KGL P + +I + G + +
Sbjct: 452 --VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFE 509
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+RI + + G + D ++ Y ++S M GI + TY +++N
Sbjct: 510 AQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVN 569
Query: 303 SC 304
C
Sbjct: 570 GC 571
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/331 (21%), Positives = 133/331 (40%), Gaps = 43/331 (12%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR----FLSSLALAVTRDSKAASRLISKFVASSPQFI 72
CCR R RL L L +QG + +SSL + D+K + P+
Sbjct: 113 CCRAR--RLDLAFAFFGCLLRQGMKADVIVVSSLLRGLC-DAKRTDEAVDVLFHRMPELG 169
Query: 73 AL-NALSH--LLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREE 129
+ +A+S+ +L R L M + + N + + ++ L K+G+ E
Sbjct: 170 CVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGGCPCNVVVYSTVVHGLFKEGKVGE 229
Query: 130 AETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDDTYARLNQ 177
A L E +++ G V+ Y ++I + CK + G N
Sbjct: 230 ACDLFHE-MTQQGVPPN--VVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNT 286
Query: 178 LVNSSSSVYVKRQALK------------------SMISGLCEMGQPHEAENLIEEMRVKG 219
L++ S++ +QA++ + ++ LC+ G+ EA + M KG
Sbjct: 287 LIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKG 346
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
+ + Y +++GY G L DM + N M DG + N++++ Y + +
Sbjct: 347 HKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAM 406
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ M+ G+ V TY +V+++ + SM
Sbjct: 407 FIFEDMQKRGLNPDVLTYLAVIHAFCRMGSM 437
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/193 (19%), Positives = 81/193 (41%), Gaps = 8/193 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + +AFL K G+ EEA L+K + ++ Y L+ +
Sbjct: 315 NTVTCSTFVAFLCKHGRIEEAREFFDSMLAK---GHKLNIISYSTLLHGYATAGC---LV 368
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D N +V + + +++G + G EA + E+M+ +GL P Y
Sbjct: 369 DMSNLFNLMVRDG--IVPNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLA 426
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I+ + R+G ++D N M G + ++ + H +L + + ++++ G
Sbjct: 427 VIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG 486
Query: 290 IPFSVRTYNSVLN 302
+ + ++ S++N
Sbjct: 487 LGPCILSFASLIN 499
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 49/220 (22%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 124 QGQREEAETLILETLSK-LGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQL 178
G +AE L+ E +K LG +L + +LI+ CK +++R FD +
Sbjct: 469 HGDLVKAEELVYEIRNKGLGP----CILSFASLINHLCKEGRVFEAQRIFD-------MI 517
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+ + V S+I G C +G+ EA + + M G+EP Y ++ G + G
Sbjct: 518 IRTGEKADV--NIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNG 575
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++D + ++ G + T ++L + Q+M +SGI ++ TY+
Sbjct: 576 RIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYS 635
Query: 299 SVL-----NSCS-TIMSMLQDLNSNDFPLSILELTEVLNE 332
+L N+C+ +++ Q L + + I+ L ++++
Sbjct: 636 ILLTGLCRNNCTEEAITVFQKLCAMNVKFDIVILNIMISK 675
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A +I L K+G+ EA+ I + + + G E+ V + +LID +C +
Sbjct: 495 ASLINHLCKEGRVFEAQR-IFDMIIRTG--EKADVNIFTSLIDGYC-------LIGKMSE 544
Query: 175 LNQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ ++ SV ++ + ++++G C+ G+ + L E+ KG++P+ F Y I+
Sbjct: 545 AFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILD 604
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G + + +M G V +++L+ +N + QK+ + F
Sbjct: 605 GLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKF 664
Query: 293 SVRTYNSVLN 302
+ N +++
Sbjct: 665 DIVILNIMIS 674
>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
Length = 694
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA L M+ G P Y +I GYG+ G LE++E +V++M G
Sbjct: 205 VIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSG 264
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N +++ + + + + +MK G+ +V T ++ +++
Sbjct: 265 CAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDA 313
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 99/207 (47%), Gaps = 11/207 (5%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
+ + L +I L K + +EA++L L + G R ++ Y ++D+F K +
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSL-LHKMDDCGLRPNTVI--YTTIMDAFFKAGKE-- 495
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ A L+++ +S V ++I GLC+ G +EA + ++MR GL+P+ Y
Sbjct: 496 -SEAVALLHKIPDSGLQPNVVTYC--ALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G+ ++G L ++N+M G +D V ++ + +L KM +
Sbjct: 553 TTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIE 612
Query: 288 SGIPFSVRTYNSVLNS-CSTIMSMLQD 313
+G+ + Y ++ C+ M+M+Q+
Sbjct: 613 TGLQLDLYCYTCFISGFCN--MNMMQE 637
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
++ + N + I+ K G+ EA L L + G + V+ YC LID CK
Sbjct: 471 DDCGLRPNTVIYTTIMDAFFKAGKESEAVAL-LHKIPDSGLQPN--VVTYCALIDGLCKA 527
Query: 163 DSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
S + ++ +L ++ + VY ++I G C++G +A +L+ EM KG+
Sbjct: 528 GSIYEAISHFDKMRELGLDPNVQVYT------TLIDGFCKIGSLSKAVHLMNEMVDKGMS 581
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
Y +I G+ + G L+ + +M G ++D C +S + + N +
Sbjct: 582 LDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGV 641
Query: 282 LQKMKDSGIPFSVRTYNSVL 301
L +M +GI YN ++
Sbjct: 642 LSEMIGTGITPDKTAYNCLI 661
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 80/170 (47%), Gaps = 5/170 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++D CK DD + + + + V ++I G A
Sbjct: 374 VVTYTVMVDGLCKEGKVAVADDVLSLMER-----AGVKANELLYTTLIHGHFMNKNSERA 428
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L+ EM+ KG+E Y +I+G ++ L++ + ++++M+ G R +TV ++ +
Sbjct: 429 LDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDA 488
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
+ + S V L K+ DSG+ +V TY ++++ S+ + ++ D
Sbjct: 489 FFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFD 538
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 8/149 (5%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
E N ++ +I K G +A L+ E + K S ++ + Y +LID K
Sbjct: 542 ELGLDPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDK---VVYTSLIDGHMKQG 598
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+G A++ + + + + ISG C M EA ++ EM G+ P
Sbjct: 599 DLQGAFALKAKMIE-----TGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPD 653
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMES 252
Y C+I Y +LG +E+ + N+MES
Sbjct: 654 KTAYNCLIRKYQKLGNMEEASSLQNEMES 682
Score = 44.7 bits (104), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 67/148 (45%), Gaps = 5/148 (3%)
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+D+FCK R +A++ + S++ G C+ G+ +A L++
Sbjct: 309 TFVDAFCKEGLVREAMKLFAQMR-----VRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLD 363
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM +GL P+ Y ++ G + G + + +++ ME G + + + ++ + +
Sbjct: 364 EMVHQGLVPNVVTYTVMVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNK 423
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
R + L +MK+ G+ V Y +++
Sbjct: 424 NSERALDLLNEMKNKGMELDVSLYGTLI 451
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P+ F + +I + G L + + +M++ G D V N ++ YG EL + L
Sbjct: 197 PNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELL 256
Query: 282 LQKMKDSGIPFSVRTYNSVLNSCS 305
+ +M+ SG V TYN+++N S
Sbjct: 257 VSEMRKSGCAADVVTYNALINCFS 280
>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
mitochondrial-like [Brachypodium distachyon]
Length = 938
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 104/212 (49%), Gaps = 13/212 (6%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF LY + + P +V + ++ L K G+ EA L E + K+G+ +
Sbjct: 263 AFSLYEEMVRKGVL---PDVVTLSALVGGLCKDGRFSEAYALFRE-MEKIGAAPNHVT-- 316
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC LID+ K ++RG +++ + L ++V S V + +++ LC+ G+ EA+++
Sbjct: 317 YCMLIDTLAK--AQRG-NESLSLLGEVV--SRGVVMDLIMYTALMDWLCKEGKIDEAKDM 371
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
P+G Y +I + G ++ E+++++ME + V + +++
Sbjct: 372 FRHALSDNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVK 431
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + ++++MK+ GI +V TY +V++
Sbjct: 432 RGWVGKATDYMREMKERGIDPNVVTYGTVIDG 463
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 87/202 (43%), Gaps = 16/202 (7%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN---LIDSFCKHDS 164
+ N +V ++ L K G+ E+AE L E ER ++L + N LID K +
Sbjct: 486 EVNKFIVDSLVNGLKKNGKIEKAEALFREM------NERGVLLDHVNYTTLIDGLFKTGN 539
Query: 165 -KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
F + + + VY I+ LC +G+ EAE+ +EEM+ GL+P
Sbjct: 540 LPAAFKVGQELTEKNLLPDAVVY------NVFINCLCMLGKSKEAESFLEEMQSTGLKPD 593
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I R G +++N M+ + + + + ++ + + + L
Sbjct: 594 QVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLN 653
Query: 284 KMKDSGIPFSVRTYNSVLNSCS 305
+M SG + T+ VL +CS
Sbjct: 654 EMSSSGFSPTSLTHRRVLQACS 675
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 104/248 (41%), Gaps = 21/248 (8%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
V ++ L + G+ + A L E + + G V+ + +L+D +CK + +A
Sbjct: 140 VNTVLVGLCRDGRVDRAAALA-EVMVRGGGIGGLDVVGWNSLVDGYCKVGD---METAFA 195
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
++ + V V S+++GLC G+ A ++++ M+ G+EP+ Y I
Sbjct: 196 VAERM--KAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVE 253
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R ++D + +M G D V + ++ S ++M+ G +
Sbjct: 254 YCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPN 313
Query: 294 VRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKW 353
TY C I ++ + N+ S+ L EV++ VV +L + L M W
Sbjct: 314 HVTY------CMLIDTLAKAQRGNE---SLSLLGEVVSR---GVVMDLIMYTAL---MDW 358
Query: 354 DSGETKLD 361
E K+D
Sbjct: 359 LCKEGKID 366
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 72/158 (45%), Gaps = 8/158 (5%)
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D+ ++ +Q++ S V +++ GL G+ E++ ++ EM+ +G+EPS Y
Sbjct: 750 LDNAFSTYDQMLYHGISPNV--ATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTY 807
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++ GYG+ + R+ +M G N ++S + +S+ +M++
Sbjct: 808 DILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQN 867
Query: 288 SGIPFSVRTYN------SVLNSCSTIMSMLQDLNSNDF 319
G+ + TY+ S L + + + L+D+ F
Sbjct: 868 RGVLPTSCTYDILVSGWSKLRNGTEVRKFLKDMKEKGF 905
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/187 (19%), Positives = 86/187 (45%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ +L K+G+ +EA+ + LS + Y LID+ CK + G + + +
Sbjct: 355 LMDWLCKEGKIDEAKDMFRHALS---DNHTPNGVTYTVLIDALCKAGNVDGAEQVLSEME 411
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S + V S+I+GL + G +A + + EM+ +G++P+ Y +I G +
Sbjct: 412 EKSISPNVV-----TFSSIINGLVKRGWVGKATDYMREMKERGIDPNVVTYGTVIDGSFK 466
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
E + ++M +G V+ + +++ + ++ + ++M + G+
Sbjct: 467 CLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKAEALFREMNERGVLLDHVN 526
Query: 297 YNSVLNS 303
Y ++++
Sbjct: 527 YTTLIDG 533
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ LC G +A ++EEM +G+ P + +I G+ + G L++ +QM
Sbjct: 704 TLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYDQMLYH 763
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + N +L + + L +MK GI S TY+
Sbjct: 764 GISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYD 808
>gi|357122161|ref|XP_003562784.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g02860-like [Brachypodium distachyon]
Length = 791
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 1/124 (0%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
SS+ + S++ +G + EN++ E++ P + Y +IY YGR G +++
Sbjct: 626 SSINLSTATYNSLMHMYSRLGDCEKCENILTEIKSSRARPDRYSYNTMIYAYGRKGQMKE 685
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
R+ ++M+ G D V N+ + SY ++ + ++ M G + RTYN++L
Sbjct: 686 ASRLFSEMKCSGLVPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTHGCKPNERTYNTILQ 745
Query: 303 S-CS 305
CS
Sbjct: 746 EYCS 749
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+IS + G EA L EEM VKG+EP Y ++ G R G ++ N+M +
Sbjct: 322 SLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSGLDRAGKIDAAIGTYNEMLRN 381
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + N ++ +G + M++ +++ +G V T+N++L
Sbjct: 382 GCKPNLCTYNALIKLHGVRGKFPEMMIVFDEIRSAGFVPDVVTWNTLL 429
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L++ MR G+ + Y +I R L ++ ++ ++M + G D V N +L YG
Sbjct: 234 LVDSMRKDGIPLDRYTYNTLISCCRRRALYKEAAKVFDEMRAAGFEPDKVTLNSLLDVYG 293
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++M+ G P SV TYNS+++S
Sbjct: 294 KARRYDEAIGVLKEMEQGGCPPSVVTYNSLISS 326
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA + +EMR G EP ++ YG+ ++ ++ +ME G V N ++
Sbjct: 265 EAAKVFDEMRAAGFEPDKVTLNSLLDVYGKARRYDEAIGVLKEMEQGGCPPSVVTYNSLI 324
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
SSY L ++M+ GI V TY ++++
Sbjct: 325 SSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLVSG 361
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA +++EM G PS Y +I Y + GLLE+ ++ +ME G D + ++
Sbjct: 300 EAIGVLKEMEQGGCPPSVVTYNSLISSYVKDGLLEEATQLKEEMEVKGIEPDVITYTTLV 359
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
S ++ + +M +G ++ TYN+++
Sbjct: 360 SGLDRAGKIDAAIGTYNEMLRNGCKPNLCTYNALI 394
>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
Length = 536
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E+A L L +S G E ++V Y LI FCK + + + V S S
Sbjct: 220 GKAEKALEL-LGVMSGFGC-EPDIVT-YNTLIQGFCKSNELNKASEMFKD----VKSGSV 272
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
SMISG C+ G+ EA +L+++M G+ P+ + ++ GY + G + E
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
I +M S G D V ++ Y ++S+ ++M G+ + TY+ ++N+
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G+ +EA ++EEM K +P + +I G+ G + + I ++M + G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-----IPFSVRTYNSVLNSC 304
D + + +LS +++ L ++ G +P +T N+ L +C
Sbjct: 483 CSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKGQSNNVVPPETKTANATLAAC 536
>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 536
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E+A L L +S G E ++V Y LI FCK + + + V S S
Sbjct: 220 GKAEKALEL-LGVMSGFGC-EPDIVT-YNTLIQGFCKSNELNKASEMFKD----VKSGSV 272
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
SMISG C+ G+ EA +L+++M G+ P+ + ++ GY + G + E
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
I +M S G D V ++ Y ++S+ ++M G+ + TY+ ++N+
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G+ +EA ++EEM K +P + +I G+ G + + I ++M + G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-----IPFSVRTYNSVLNSC 304
D + + +LS +++ L ++ G +P +T N+ L +C
Sbjct: 483 CSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKGQSNNVVPLETKTANATLAAC 536
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 58/114 (50%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R A SM+ LC G+ EA +L+ ++ KG+ Y + G+L + + +
Sbjct: 418 RDACVSMLECLCSAGKTTEAIDLLGKIHEKGVSVDTVMYNTVFSALGKLKQISPLHDLYE 477
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+M+ DG DT N+++SS+G ++ + ++++DS +YNS++N
Sbjct: 478 KMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYNSLIN 531
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 55/108 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ S L ++ Q +L E+M+ G P F Y +I +GR G +++ +I ++E
Sbjct: 458 TVFSALGKLKQISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDS 517
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ DT N +++ G + L + ++M + G+ V TY++++
Sbjct: 518 DYKPDTCSYNSLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLI 565
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + G EA +EM KGL P Y +I +G+ +E R+ ++M ++
Sbjct: 528 SLINCLGKNGHLDEAHMKFKEMCEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAE 587
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYN 298
G + V N++L + V K+K G IP S+ TY+
Sbjct: 588 GCYPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLIPDSI-TYS 632
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/274 (21%), Positives = 122/274 (44%), Gaps = 23/274 (8%)
Query: 60 LISKFVASS---PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAE 116
L+ K V S P + N L H+LS +LAF ++ E+ F + +
Sbjct: 358 LMEKMVQDSNLIPDQVTYNTLIHMLSKHGHAD--DALAF---LKEAEDKGFHIDKVGYSA 412
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I+ ++G+ +EA++L+++ S+ + + V+ Y ++D FC+ D+ L
Sbjct: 413 IVHSFCQKGRMDEAKSLVIDMYSRSCNPD---VVTYTAIVDGFCRLGR---IDEAKKMLQ 466
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q+ + ++++GLC G+ EA +I P+ Y +++G+ R
Sbjct: 467 QMYKHGCKP--NTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFRR 524
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G L + + +M G V N+++ S + ++ +L++ + G +V
Sbjct: 525 EGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVN 584
Query: 297 YNSVLNSCSTI------MSMLQDLN-SNDFPLSI 323
+ +V++ I +S+L+D+ SN P ++
Sbjct: 585 FTTVIHGFCQIGDMEAALSVLEDMYLSNKHPDAV 618
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 74/155 (47%), Gaps = 13/155 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYA 173
++ FL K+ + E+ + L+ + + ++ L+ + Y LI KH DD A
Sbjct: 342 VMGFLCKEKKIEQVKCLMEKMV-----QDSNLIPDQVTYNTLIHMLSKHGHA---DDALA 393
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L + ++ + +++ C+ G+ EA++L+ +M + P Y I+ G
Sbjct: 394 FLKEA--EDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDG 451
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ RLG +++ ++++ QM G + +TV +L+
Sbjct: 452 FCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNG 486
Score = 45.1 bits (105), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 95/213 (44%), Gaps = 21/213 (9%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A ++ M +G+E S + C++ Y R G L + R++ M+ G + N +
Sbjct: 215 ARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIY 274
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV------LNSCSTIMSMLQDLNSNDFPL 321
+L + + +L++M+ +GI + TYNS+ LN + ++ L S P
Sbjct: 275 VLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPP 334
Query: 322 SILELTEVLN----EEEVSVVKEL-----EDSSVLDEAMKWDSGETKLDLHGMHLGSAYF 372
+ V+ E+++ VK L +DS+++ + + +++ L HG H A
Sbjct: 335 DKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHG-HADDA-- 391
Query: 373 IILQWMDEMRNR-FNNEKHVIPAEITVVCGSGK 404
L ++ E ++ F+ +K A + C G+
Sbjct: 392 --LAFLKEAEDKGFHIDKVGYSAIVHSFCQKGR 422
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLFYCNLID 157
+ ++EE W+ N ++ ++G+ EA L E + K E+ L LI
Sbjct: 500 INVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINL----LIQ 555
Query: 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
S C++ + + L + +N ++ V ++I G C++G A +++E+M +
Sbjct: 556 SLCQN---QKVVEAKKYLEECLNKGCAINVVN--FTTVIHGFCQIGDMEAALSVLEDMYL 610
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
P Y + G+ G L++ ++ +M S G V V+ Y +
Sbjct: 611 SNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDD 670
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVL 301
M+ L +M PF YN V+
Sbjct: 671 MLNLLDRMVKRK-PFRT-IYNHVI 692
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A +E M+V G++P Y +I GY L +ED ++ + S G D V V+
Sbjct: 284 KALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVM 343
Query: 267 SSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
++ ++ ++KM +DS + TYN T++ ML D L+ L+
Sbjct: 344 GFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYN-------TLIHMLSKHGHADDALAFLK 396
Query: 326 LTE 328
E
Sbjct: 397 EAE 399
>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1280
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 120/253 (47%), Gaps = 22/253 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++ L K+G+ +EA+ +I + K G V+ Y L+D +C + + ++
Sbjct: 269 LVDALCKEGKIKEAKNVI-AVMMKEGVEPT--VVTYNTLMDGYCLVNEVGKAKHVLSIIS 325
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + +S ++ MI+G C++ EA L EM +G+ P Y +I G +
Sbjct: 326 RMRVAPNS-----RSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCK 380
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + +V++M ++ D V N ++ + + + + + ++K+K+ GI ++ T
Sbjct: 381 AGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCT 440
Query: 297 YNSVLNS------CSTIMSMLQDL-----NSNDFPLSIL---ELTEVLNEEEVSVVKELE 342
YN +++ + QDL N N + +I+ E L +E ++ ++E
Sbjct: 441 YNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKME 500
Query: 343 DSSVLDEAMKWDS 355
D+ ++ +A+ +++
Sbjct: 501 DNGIIPDAVTYET 513
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +LID FCK+ D A + ++ + +I GLC+ GQ A
Sbjct: 403 IVTYNSLIDVFCKNQH---VDKAIALVKKI--KEHGIQPNMCTYNILIDGLCKGGQLKNA 457
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++ +++ +KG + + Y +I G + GL ++ E ++++ME +G D V ++ +
Sbjct: 458 QDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQA 517
Query: 269 YGDHNELSRMVLWLQKMKDSGI---PFSV------RTYNSVLNSCSTIMSMLQ 312
+E + L++M G+ F + RT N +N S + S L+
Sbjct: 518 LFHKDENEKAQKLLREMVIKGVVVYAFEIRRTLVGRTLNLGMNLISLLFSALE 570
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI+ CK R ++ +LVN++ +Y ++I GLC+ +A
Sbjct: 161 YGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMY------STIIDGLCKDKLVTDAYG 214
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM VK + P+ + +IYG+ +G +D R+ N+M D N+++ +
Sbjct: 215 LYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALC 274
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + M G+ +V TYN++++
Sbjct: 275 KEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDG 307
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
F N +I L K GQ A ++ + KL + V+ Y +ID CK +
Sbjct: 154 FHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTN---VVMYSTIIDGLCK---DK 207
Query: 167 GFDDTYARLNQLVNSSSSVYVKR-----QALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y ++++ VKR S+I G C +G+ +A L EM +K +
Sbjct: 208 LVTDAYGLYSEMI-------VKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNIN 260
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P + + ++ + G +++ + ++ M +G V N ++ Y NE+ +
Sbjct: 261 PDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHV 320
Query: 282 LQKMKDSGIPFSVRTYNSVLNSCSTI 307
L + + + R+YN ++N I
Sbjct: 321 LSIISRMRVAPNSRSYNIMINGFCKI 346
>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 755
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 2/141 (1%)
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
G + R+ L+ SV + A+ S+I+G + GQ EA +++ EM KGL P
Sbjct: 226 GRGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPET 285
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y I GR G ++ ++ QMES G D + + + + G + V L +
Sbjct: 286 ISYNMAIRACGRSGRWKEAVEVLRQMESQGVTPDVISYDAAIKACGGGGQWETSVDLLDE 345
Query: 285 MKDSGIPFSVRTYNSVLNSCS 305
M G+ + +NS + +C
Sbjct: 346 MAGRGVAPNTIHFNSAIVACG 366
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 71/157 (45%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y + I + K D A++ +L + S+ S I+ + G+ EA
Sbjct: 495 VITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSI-----TYNSAIAACSKRGRWKEA 549
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ EM +GL P Y I YG+ G E ++ QM + G + + N V+ +
Sbjct: 550 VALLREMPGQGLTPDVISYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKA 609
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G E + + L+++K++ + + +YN +++C
Sbjct: 610 CGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACG 646
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 54/115 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S I+ + G+ EA L++EM K L+P Y I G+ G E + QM
Sbjct: 392 SFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYNSAIEACGKGGQWEMALELRRQM 451
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ G + + SN+ + + G+ + L++M G+ +V TYNS + +C
Sbjct: 452 PTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCG 506
Score = 44.7 bits (104), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 12/191 (6%)
Query: 118 IAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI-DSFCKHDSKRG-FDDTYARL 175
I K GQ E+A L+ L+K+ +EL + ++ +S SKRG + + A L
Sbjct: 502 IKTCGKGGQWEKA----LDLLAKM----KELAMTPDSITYNSAIAACSKRGRWKEAVALL 553
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ + V + + I + GQ A L+ +M KGL P+ Y +I G
Sbjct: 554 REMPGQGLTPDVI--SYTAAIDAYGKNGQWERAVELLRQMPTKGLTPNVITYNSVIKACG 611
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
R G E ++ +++ D + N+ +S+ G + L++M G+ V
Sbjct: 612 RGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVI 671
Query: 296 TYNSVLNSCST 306
+Y S + +C+
Sbjct: 672 SYTSAIRACNA 682
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 60/144 (41%), Gaps = 6/144 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S I + GQ A L +M KGL P+ I G G ++ ++ QM +
Sbjct: 430 SAIEACGKGGQWEMALELRRQMPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQ 489
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
G + + N + + G + + + L KMK+ + TYNS + +CS
Sbjct: 490 GLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEA 549
Query: 308 MSMLQDLNSNDFPLSILELTEVLN 331
+++L+++ ++ T ++
Sbjct: 550 VALLREMPGQGLTPDVISYTAAID 573
>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
Length = 543
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 50/101 (49%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I G+C G+ A +L + KGL+P + Y +I G R GLL++ ++ +M+ +G
Sbjct: 386 IDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGC 445
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ N + + +NE SR + LQ+M G T
Sbjct: 446 TLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 486
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 69/149 (46%), Gaps = 3/149 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+SFC H ++ + ++++ V ++I+GLC++G A L+
Sbjct: 102 LINSFC-HLNRGKIGEALHLFDKMIGEGFRPDVVTYG--TLINGLCKVGNTSAAIRLLGS 158
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M K +P+ F Y II + + + + ++M + G D N ++ + + E
Sbjct: 159 MVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCE 218
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L +M DS I V ++N+V+++
Sbjct: 219 WKHVATLLNEMVDSKIMPDVVSFNTVVDA 247
>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
ligustrinum]
Length = 418
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 83/164 (50%), Gaps = 13/164 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
LA +Y ++ + + +P L+ +I L ++G ++A LI+E +S G + ++
Sbjct: 259 LALEIYKQMLRQGY---SPDLITYNTLIYGLCRKGDLKQARDLIVE-MSMKGLKPDKIT- 313
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID CK + R+ + S+ + A ++ISGLC+ G+ +AE
Sbjct: 314 -YTTLIDGSCKEGDLETAFELRKRMIE-----ESIRLDDVAYTALISGLCQEGRAVDAEK 367
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ EM GL+P Y II G+ + G ++ +++ +M+ DG
Sbjct: 368 MLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G +A +LI EM +KGL+P Y +I G + G LE + +M +
Sbjct: 281 TLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEE 340
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R+D V ++S L++M G+ TY ++N
Sbjct: 341 SIRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGLKPENGTYTMIING 390
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/105 (20%), Positives = 50/105 (47%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
C+ G+ A+++ + + GL PS + +I GY RLG L+ R+ M + G D
Sbjct: 146 FCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPD 205
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++++ +++ +M D G+ + T+ ++++
Sbjct: 206 VYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDG 250
>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Vitis vinifera]
gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
Length = 767
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID F K + + YAR+ ++ + V A +I+ LC + EA
Sbjct: 570 VVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMV-----AYTILINILCHRSRMCEA 624
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL ++M G+ P Y +I G+ R+G + + N+M G V ++
Sbjct: 625 YNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDG 684
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
Y N + + + +MK GI V TYN ++
Sbjct: 685 YCKMNRIDIADMLIDEMKRKGITPDVVTYNVLI 717
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
KQG E+ LI E K + E LV Y +L CK KR D + L +
Sbjct: 372 KQGDVEKGLYLIEEM--KYSNMEPSLV-SYSSLFHGLCK---KRLSDISLDIFRDL--GA 423
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ + A +I G C G A L+EEM L P ++ +++G+ ++GL +
Sbjct: 424 AGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVN 483
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N M G N+++ ++ + + + +M+ GI ++ TYN+V+N
Sbjct: 484 ALEFFNMMLEGGILPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVIN 543
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 54/97 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+G C +G +A L EM +G P+ Y ++ GY ++ ++ + ++++M+
Sbjct: 645 SVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRK 704
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G D V N++++++ L + + L +MK++G+
Sbjct: 705 GITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGV 741
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 45/97 (46%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A ++EEM G P+ Y IYG R+G +E V + S V+ C N ++
Sbjct: 273 QATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAII 332
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
EL + L++MK GI V TY+ +++
Sbjct: 333 HGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHG 369
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVK 188
T ILE + + G E V+ Y I C+ +S F + N LVN VY
Sbjct: 275 TEILEEMERNG--ESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVN----VY-- 326
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++I GLC+ G+ EA ++EEM+ G+ P + Y +I+G+ + G +E ++
Sbjct: 327 --CYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIE 384
Query: 249 QME 251
+M+
Sbjct: 385 EMK 387
>gi|147845950|emb|CAN82028.1| hypothetical protein VITISV_000613 [Vitis vinifera]
Length = 790
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 95/196 (48%), Gaps = 14/196 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLI-LE---TLSKLGSRERELVLFYCNLIDSFCKHDSK 165
N + A ++ L K G EA L+ L+ + G R+ Y ++++S C
Sbjct: 428 NKSIYAYLVRTLSKLGHASEAHRLLHLQYDWSFHDEGDRDA-----YMSMLESLCDAGKT 482
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D +++++ S+ +V +++S L ++ + + +L E+M+ G P F
Sbjct: 483 TEALDLLSKIHEKRISTDTV-----MYNTVLSALGKLKKTSDLHDLYEKMKQDGPSPDIF 537
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I +GR G +E+ +I ++E+ + D + N +++ G + ++ + ++M
Sbjct: 538 SYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLINCLGKNGDIDEAHMRFKEM 597
Query: 286 KDSGIPFSVRTYNSVL 301
++ G+ V TY++++
Sbjct: 598 REEGLSPDVVTYSTLI 613
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 58/114 (50%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R A SM+ LC+ G+ EA +L+ ++ K + Y ++ G+L D+ +
Sbjct: 466 RDAYMSMLESLCDAGKTTEALDLLSKIHEKRISTDTVMYNTVLSALGKLKKTSDLHDLYE 525
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+M+ DG D N+++SS+G + V +++++S + ++NS++N
Sbjct: 526 KMKQDGPSPDIFSYNILISSFGRAGRVEEAVKIFEELENSSCKPDIISFNSLIN 579
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S+I+ L + G EA +EMR +GL P Y +I +G+ +E R+ ++M
Sbjct: 573 SFNSLINCLGKNGDIDEAHMRFKEMREEGLSPDVVTYSTLIECFGKTDKVEMACRLFDEM 632
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
++G + V N++L + V K+K G+ TY
Sbjct: 633 LAEGCSPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITY 679
>gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Cucumis sativus]
Length = 637
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 6/161 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LIDS + ++ + L + SS+ + MI G+ +A +L
Sbjct: 444 YCSLIDSLGRAKRYEAANELFQELKENCGRSSA-----RVYAVMIKHFGNCGRLSDAVDL 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM+ G P + Y ++ G R G++++ ++ M +G D N++L+
Sbjct: 499 FCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMRENGCTPDIKSHNIILNGLAK 558
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
R + KMK+S I +YN++L SC + M +
Sbjct: 559 TGGPKRAIEMFTKMKESEIMPDAVSYNTIL-SCLSRAGMFE 598
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 84/187 (44%), Gaps = 7/187 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +G E+ L E S+ + Y LI +F K + +D + +
Sbjct: 200 LILMLMHEGHHEKIHELYNEICSEGNCSPDTIT--YSALISAFGKLER---YDFAFRLFD 254
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + ++ + ++++ ++ + A L+EEM+ KG P+ F Y +I G G+
Sbjct: 255 EM--KENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTVFTYTELIKGLGK 312
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+G ++D + M DG + D V N +++ G L + KM +V T
Sbjct: 313 VGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGKMDSLQCAPNVVT 372
Query: 297 YNSVLNS 303
YN+V+ +
Sbjct: 373 YNTVIKA 379
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I GR E + +++ +
Sbjct: 412 LIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENC 471
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIM 308
R +++ +G+ LS V +MK G V TYN++++
Sbjct: 472 GRSSARVYAVMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAH 531
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKL 360
S+++++ N I +LN + + + ++++S ++ +A+ +++ + L
Sbjct: 532 SLMRNMRENGCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCL 591
Query: 361 DLHGM 365
GM
Sbjct: 592 SRAGM 596
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 75/205 (36%), Gaps = 8/205 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L + + E A L E G R Y +I F
Sbjct: 433 DEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCG---RSSARVYAVMIKHFGNC 489
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D + + +L S VY +++SG+ G EA +L+ MR G P
Sbjct: 490 GRLSDAVDLFCEMKKL-GCSPDVYT----YNALMSGMIRAGMIDEAHSLMRNMRENGCTP 544
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ I+ G + G + + +M+ D V N +LS +
Sbjct: 545 DIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLM 604
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTI 307
++MK G + TY+S+L + +
Sbjct: 605 REMKLKGFEYDSITYSSILEAVGKV 629
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + G P A + +M+ + P Y I+ R G+ E +++ +M+ G
Sbjct: 552 ILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMAAKLMREMKLKG 611
Query: 255 TRVDTVCSNMVLSSYGDHNE 274
D++ + +L + G +E
Sbjct: 612 FEYDSITYSSILEAVGKVDE 631
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 89/196 (45%), Gaps = 10/196 (5%)
Query: 110 NPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP + +I L K+G+ +E++ L L ++K G + V+ Y L+D +C +
Sbjct: 217 NPNIYTYNTLIDTLCKEGKVKESKNL-LAVMTKKGVKPD--VVIYSILMDGYCLVGEVQK 273
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ LV + V + +I+GLC+ + EA NL+ EM K + P Y
Sbjct: 274 AKQIF-----LVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTY 328
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G +LG + + + +M G + V N +L + L + + KMK+
Sbjct: 329 SSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKE 388
Query: 288 SGIPFSVRTYNSVLNS 303
GI + TY ++++
Sbjct: 389 RGIQPNKYTYTALIDG 404
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 71/158 (44%), Gaps = 5/158 (3%)
Query: 146 RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
R V+ Y +ID CK D Y+ +N + ++ ++I G C GQ
Sbjct: 147 RPDVVMYSTIIDGLCKDKLVDEAYDLYSEMN-----ARGIFPDVITYTTLICGFCLAGQL 201
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA L+ EM +K + P+ + Y +I + G +++ + ++ M G + D V +++
Sbjct: 202 MEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSIL 261
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Y E+ + M +G+ V +YN ++N
Sbjct: 262 MDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 89/191 (46%), Gaps = 15/191 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPH 206
V+ Y LI FC + + LN+++ N + ++Y ++I LC+ G+
Sbjct: 185 VITYTTLICGFCLAGQ---LMEAFGLLNEMILKNINPNIY----TYNTLIDTLCKEGKVK 237
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E++NL+ M KG++P Y ++ GY +G ++ ++I M G D N+++
Sbjct: 238 ESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIII 297
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFP 320
+ + + L++M + TY+S+++ +TI+ + ++++ P
Sbjct: 298 NGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQP 357
Query: 321 LSILELTEVLN 331
+++ +L+
Sbjct: 358 ANLVTYNSLLD 368
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 86/193 (44%), Gaps = 20/193 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K + +EA L+ E L K + + Y +LID CK R+
Sbjct: 296 IINGLCKGKRVDEAMNLLREMLHKNMIPD---TVTYSSLIDGLCK----------LGRIT 342
Query: 177 QLVNSSSSVYVKRQ-----ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+++ + ++ + Q S++ GLC+ +A L +M+ +G++P+ + Y +I
Sbjct: 343 TILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALI 402
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-I 290
G + G L+ + + + G +D +++S + KM+D+G I
Sbjct: 403 DGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCI 462
Query: 291 PFSVRTYNSVLNS 303
P +V T+ ++ S
Sbjct: 463 PNAV-TFEIIIRS 474
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 107/277 (38%), Gaps = 45/277 (16%)
Query: 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLS----PDT 85
CL + K Q FL + V D + + +I+ A+N L +L PDT
Sbjct: 266 CLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDT 325
Query: 86 THPRLSSLAFPLYMRITEESWFQWNPKL--VAEIIAFLDKQGQREEAETLILETLSKLGS 143
+T S KL + I+ + R + L+
Sbjct: 326 ---------------VTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVT-------- 362
Query: 144 RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203
Y +L+D CK+ + D A ++ + + ++I GLC+ G
Sbjct: 363 --------YNSLLDGLCKN---QNLDKAIALFMKM--KERGIQPNKYTYTALIDGLCKGG 409
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ + + L + + VKG + Y +I G + G+ ++ + ++ME +G + V
Sbjct: 410 RLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFE 469
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNS 299
+++ S + +E + L +M G +PF R ++S
Sbjct: 470 IIIRSLLEKDENDKAEKLLHEMIAKGLLPF--RNFHS 504
>gi|242095336|ref|XP_002438158.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
gi|241916381|gb|EER89525.1| hypothetical protein SORBIDRAFT_10g008940 [Sorghum bicolor]
Length = 607
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y LI FC+ H++ + F++ Q VY +++S LC+ G
Sbjct: 385 YNILIGGFCRKKRLHEAHQLFEEMKGAGLQ-----PDVYT----YNTLLSCLCKAGDFSA 435
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
+ L+ M G +PS + +++GY + G ++ +I M + +TV N ++
Sbjct: 436 VDELLGNMIDDGCQPSVVTFGTLVHGYCKAGKTDEALKIFRSMGEARIQPNTVIYNTLID 495
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELT 327
E+ + +M+++ +P +V TYN++L LQD N P EL
Sbjct: 496 FLCKSREVDVAIKLFDEMRENNVPANVTTYNALLKG-------LQDKN---MPEKAFELM 545
Query: 328 EVLNEEEVSVVKELEDSSVLDEAMKW--DSGETK 359
+ + EE + D +D M+W + GET+
Sbjct: 546 DQMKEERCT-----PDYVTMDVLMEWLPEIGETE 574
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L++ CK D L+++ + S V L +++ GLC++G+ +A
Sbjct: 166 IVTYGILLNRLCKAGL---VGDALKVLDRMSSPGSDVCADIVILNTVVDGLCKIGRLQDA 222
Query: 209 ENLIEE-MR-VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
++E MR V G P+ Y C+ R+G ++ +IV +ME +G + + N ++
Sbjct: 223 IVFVDERMRQVHGCAPNTVTYNCLADACCRVGDIDMACQIVERMEKEGVTPNVITMNTIV 282
Query: 267 SS 268
Sbjct: 283 GG 284
Score = 43.1 bits (100), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L EM +G P Y +I G + G L D I M+ G ++D N+++
Sbjct: 331 AMELFHEMADQGYPPDAVMYFTMISGLTQAGRLVDACNIAASMKKAGFKLDRKAYNILIG 390
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ L ++MK +G+ V TYN++L SC
Sbjct: 391 GFCRKKRLHEAHQLFEEMKGAGLQPDVYTYNTLL-SC 426
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ + EA ++ EM KGL PS Y +I GY + G+++D I++ MES+
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNS 399
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+T N ++ ++ + + L KM + + S+ TYNS+++
Sbjct: 400 CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHG 448
Score = 46.6 bits (109), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK DD + L+ + S+S + +I GLC+ + H+A
Sbjct: 369 VVTYNALIDGYCKEGM---IDDAFEILDLM--ESNSCGPNTRTYNELICGLCKKRKVHKA 423
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG---------TRVDT 259
L+ +M + L PS Y +I+G ++ LE R+++ M +G +DT
Sbjct: 424 MALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDT 483
Query: 260 VC 261
+C
Sbjct: 484 LC 485
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +LI C++ +G D+ Y L+ + ++I GLCE G+ +EA L
Sbjct: 232 YTSLILGHCRN---KGVDNAYEVF--LIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKL 286
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M P+ Y +IY G + + N+M+ G + +++
Sbjct: 287 FADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCK 346
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++ L +M + G+ SV TYN++++
Sbjct: 347 ENKMDEARKMLSEMSEKGLIPSVVTYNALIDG 378
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I L G+ EA NL EM+ KG EP+ Y +I G + +++ +++++M G
Sbjct: 305 LIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKG 364
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V N ++ Y + L M+ + + RTYN ++
Sbjct: 365 LIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELI 411
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 88/191 (46%), Gaps = 14/191 (7%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSKR 166
N + E+I L K+ + +A L+ + L ER+L ++ Y +LI CK +
Sbjct: 403 NTRTYNELICGLCKKRKVHKAMALLNKML------ERKLSPSLITYNSLIHGQCKVND-- 454
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ Y RL L+N + V + I LC+ G+ EA L + ++ KG++ +
Sbjct: 455 -LESAY-RLLSLMNENGLV-PDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEVI 511
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I GY ++G ++ ++ +M +D ++ N+++ ++ + KM
Sbjct: 512 YTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKML 571
Query: 287 DSGIPFSVRTY 297
G+ +V TY
Sbjct: 572 TMGVKPTVVTY 582
>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18950-like [Glycine max]
Length = 577
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 81/190 (42%), Gaps = 13/190 (6%)
Query: 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
E+I K+GQ + ++ ++K + + V Y +I K + GF
Sbjct: 254 ELIRGFCKEGQYDRVSEILHIMIAKQCNPD---VSTYQEIIYGLLKMKNSEGF------- 303
Query: 176 NQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
Q+ N + R ++I GLCEM + EA L EM KG +P+ + Y +++G
Sbjct: 304 -QVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHG 362
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y ++G L + +I M G TV ++S H ++M GI
Sbjct: 363 YCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPD 422
Query: 294 VRTYNSVLNS 303
+ TYN ++ +
Sbjct: 423 LITYNCLIKA 432
>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
Length = 973
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G +A L+EEM +KG+ P Y +I G + G +E + + + +E
Sbjct: 631 SLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR 690
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G + V ++ Y + L++M G+P YN +LN C
Sbjct: 691 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 741
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 11/188 (5%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
AF+D K G+ E A+ E LS G V Y LI+ CK + + ++
Sbjct: 526 AFIDGYSKAGEMEIADRYFNEMLS-CGVLPN--VGIYTALIEGHCKEGN---VTEAFSVF 579
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ S V Q +I GL G+ HEA + E++ KGL P+ F Y +I G
Sbjct: 580 RFIL--SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSC 637
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G ++ +++ +M G D V N+++ E+ R ++ G+ +
Sbjct: 638 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 697
Query: 296 TYNSVLNS 303
TY ++++
Sbjct: 698 TYAAMVDG 705
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I G C A L++EM+ + L P+ Y II G R G L+ I+ +
Sbjct: 382 QTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 441
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
M +G + + V +++++ + + L++M++ GI V YNS++
Sbjct: 442 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 493
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 18/164 (10%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS---------- 194
V Y N+I + CK D+KR + + L ++ +KR +
Sbjct: 224 VYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLL---DEAIELKRSMVDKGLVPDLYTYD 280
Query: 195 -MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+I+G C + EA+ ++ EM GL+P Y +I G+ R G +E RI ++M +
Sbjct: 281 ILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVAC 340
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G + + N +L+ ++ + + +Q+M + G+ +TY
Sbjct: 341 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 384
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC G ++ EM + GL+P+ Y ++ + + G +E+ I+ +M G
Sbjct: 422 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 481
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
D C N ++ + + +L +M + + + TY + ++ S M
Sbjct: 482 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEM 537
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 5/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
F N+I +FC + K F+ +++ + V + ++I G C+ G+ EA +
Sbjct: 732 FIYNVILNFCCKEEK--FEKALDLFQEMLEKGFASTV---SFNTLIEGYCKSGKLQEANH 786
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L+EEM K P+ Y +I + G++ + +R+ +M+ +L Y
Sbjct: 787 LLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYH 846
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +S + ++M GI TY ++++
Sbjct: 847 NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDA 879
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C+ + EA + EM + L P+ Y I GY + G +E +R N+M S
Sbjct: 491 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 550
Query: 254 GT 255
G
Sbjct: 551 GV 552
>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g12775, mitochondrial; Flags: Precursor
gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
multiple PPR PF|01535 repeats. EST gb|AI999079 comes
from this gene [Arabidopsis thaliana]
gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 644
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 42/278 (15%)
Query: 57 ASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A L+ + V P I LN L + L + ++S A L R+ E + FQ N
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLC---LNGKVSD-AVVLIDRMVE-TGFQPNEVTY 231
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDS--------- 164
++ + K GQ L +E L K+ R +L + Y +ID CK S
Sbjct: 232 GPVLNVMCKSGQ----TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 287
Query: 165 ---KRGFDDTYARLNQLVNSSSSV------------YVKRQ------ALKSMISGLCEMG 203
+GF N L+ + +KR+ +I + G
Sbjct: 288 EMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA+ L++EM +G+ P+ Y +I G+ + LE+ ++V+ M S G D + N
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++++ Y N + + ++M G+ + TYN+++
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 187 VKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+K A+K +I GLC+ G A NL EM +KG + Y +I G+ G +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ M + V ++++ S+ +L L++M GI + TYNS+++
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Score = 45.1 bits (105), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 74/280 (26%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDD 170
K+G+ EA+ L+ E + + G + Y +LID FCK + +G D
Sbjct: 345 KEGKLREADQLLKEMMQR-GIAPNTIT--YNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 171 TYARLNQLVN------------------SSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
N L+N S V +++ G C+ G+ A+ L
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD------------------- 253
+EM + + P YK ++ G G LE I ++E
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 254 ----------------GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++D N+++S + LS+ + +KM + G TY
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Query: 298 NSVL------NSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
N ++ + +T +++++ S+ FP + + V+N
Sbjct: 582 NILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
+ G+ E A+ L E +S+ R R ++ Y L+D C + + + ++ +
Sbjct: 450 QSGKLEVAKKLFQEMVSR---RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK----- 501
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S + + +I G+C + +A +L + +KG++ Y +I R L
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSK 561
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + +M +G D + N+++ ++ ++ + +++MK SG P V T V+N
Sbjct: 562 ADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Query: 303 SCST 306
S+
Sbjct: 622 MLSS 625
>gi|414875530|tpg|DAA52661.1| TPA: hypothetical protein ZEAMMB73_467633 [Zea mays]
Length = 987
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 21/198 (10%)
Query: 116 EIIAFLDKQGQ--REEAETLILETLSKLGSRERELVLF--------------YCNLIDSF 159
E +FL ++G + T +++ SK G+ + VL Y L+ +
Sbjct: 581 EAYSFLVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQAL 640
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK ++ ++ + L+Q+ + S V A +IS + + G+ A++L EM G
Sbjct: 641 CK---QKKLNEALSILDQM--TVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMISSG 695
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
+PS Y I Y ++G +E+ E ++ +ME DG D V ++ ++ G + R
Sbjct: 696 HKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVTYHIFINGCGHMGYMDRAF 755
Query: 280 LWLQKMKDSGIPFSVRTY 297
L++M D+ + TY
Sbjct: 756 STLKRMVDASCEPNCWTY 773
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ H+A L++EM ++G+ PS + Y +I GY + G ++D I ME +G
Sbjct: 290 LIKGLCKEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNG 349
Query: 255 TRVD 258
D
Sbjct: 350 CNPD 353
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 89/194 (45%), Gaps = 19/194 (9%)
Query: 121 LDKQGQREEAETLILE---TLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL-N 176
L K G+ EEA + ++ L+K+ Y +L+D F SK G D A L
Sbjct: 573 LCKSGRAEEAYSFLVRKGVVLTKVT---------YTSLVDGF----SKAGNTDFAAVLIE 619
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++VN + ++ ++ LC+ + +EA +++++M V G++ + Y II +
Sbjct: 620 KMVNEGCKADLYTYSV--LLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIK 677
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + + N+M S G + + +SSY ++ + +M+ G+ V T
Sbjct: 678 EGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGQIEEAEHLIGEMERDGVTPDVVT 737
Query: 297 YNSVLNSCSTIMSM 310
Y+ +N C + M
Sbjct: 738 YHIFINGCGHMGYM 751
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/212 (18%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS- 183
G+ +EAE L+ +++ + V+ + NLI+ +CK + DD + +++S+
Sbjct: 367 GKLDEAEELLNGAIARGFT---PTVITFTNLINGYCKAER---IDDALRVKSNMISSNCK 420
Query: 184 ----------SVYVKRQALK----------------------SMISGLCEMGQPHEAENL 211
+V +K+ LK S+I G C++G A +
Sbjct: 421 LDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVIYTSIIDGYCKVGMVGAALEV 480
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M +G P+ + Y +IYG + L ++ +M+ DG + ++
Sbjct: 481 FKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVIAYTTLIQGQCK 540
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+E + M+ +G+ + YN + ++
Sbjct: 541 KHEFDNAFRLFEMMEKNGLTPDEQAYNVLTDA 572
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 117 IIAFLDKQGQREEAETL--ILETLSKLGSRERELVLF--------------YCNLIDSFC 160
+ A + K+G +A TL +++ L G +R L Y LI+ C
Sbjct: 150 VFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLC 209
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVK 218
K G ARL + + S VK + ++I LC+ + +A +L EM VK
Sbjct: 210 K----AGETKAVARLLRKLEGHS---VKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVK 262
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G+ P+ F Y +IYG+ +G L++ ++N+M+ D N+++ + G ++
Sbjct: 263 GISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEA 322
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++MK + ++ TY S+++
Sbjct: 323 ISLFEEMKHKNMFPNIVTYTSLIDG 347
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 89/198 (44%), Gaps = 10/198 (5%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL-GSRERELVLFYCNLIDSFCKHDSK 165
FQ + +I L K G+ + L L KL G + V+ Y +I CK+
Sbjct: 194 FQLDQVSYGTLINGLCKAGETKAVARL----LRKLEGHSVKPDVVMYTTIIHCLCKNKRV 249
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D Y+ + + S +V+ ++I G C MG EA +L+ EM++K + P +
Sbjct: 250 GDACDLYSEM-IVKGISPNVF----TYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVY 304
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +I G+ G +++ + +M+ + V ++ ++ L R + +KM
Sbjct: 305 TFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKM 364
Query: 286 KDSGIPFSVRTYNSVLNS 303
K+ GI V +Y +L++
Sbjct: 365 KEQGIQPDVYSYTILLDA 382
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFDDTYARL 175
+I L K+G+ +EA +L E K ++ Y +LID CK H +R
Sbjct: 309 LIDALGKEGKIDEAISLFEEMKHK---NMFPNIVTYTSLIDGLCKNHHLERAIALCKKMK 365
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
Q + Y ++ LC+ G+ A+ + + VKG + Y +I G
Sbjct: 366 EQGIQPDVYSYT------ILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLC 419
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ GL D+ + ++ME G D + ++ + + +E + +L++M G+
Sbjct: 420 KAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMIARGL 474
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G +A L+EEM +KG+ P Y +I G + G +E + + + +E
Sbjct: 640 SLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGR 699
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G + V ++ Y + L++M G+P YN +LN C
Sbjct: 700 GLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFC 750
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 83/188 (44%), Gaps = 11/188 (5%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
AF+D K G+ E A+ E LS G V Y LI+ CK + + ++
Sbjct: 535 AFIDGYSKAGEMEIADRYFNEMLS-CGVLPN--VGIYTALIEGHCKEGN---VTEAFSVF 588
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
++ S V Q +I GL G+ HEA + E++ KGL P+ F Y +I G
Sbjct: 589 RFIL--SRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSC 646
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G ++ +++ +M G D V N+++ E+ R ++ G+ +
Sbjct: 647 KQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCV 706
Query: 296 TYNSVLNS 303
TY ++++
Sbjct: 707 TYAAMVDG 714
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 54/112 (48%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I G C A L++EM+ + L P+ Y II G R G L+ I+ +
Sbjct: 391 QTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILRE 450
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
M +G + + V +++++ + + L++M++ GI V YNS++
Sbjct: 451 MVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLI 502
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 53/103 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C + EA+ ++ EM GL+P Y +I G+ R G +E RI ++M + G
Sbjct: 291 LINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACG 350
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + N +L+ ++ + + +Q+M + G+ +TY
Sbjct: 351 IEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTY 393
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/116 (21%), Positives = 52/116 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC G ++ EM + GL+P+ Y ++ + + G +E+ I+ +M G
Sbjct: 431 IINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQG 490
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
D C N ++ + + +L +M + + + TY + ++ S M
Sbjct: 491 ILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEM 546
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 68/140 (48%), Gaps = 14/140 (10%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I C+ G EA+ L EM+ + + P+ Y +++GY +G + ++ + +M +
Sbjct: 814 SLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAK 873
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD----SGIPFSVRTYNSVLNS-CST-- 306
G D + +++ +Y V+ K+KD G+P SV Y++++ + C
Sbjct: 874 GIEPDKMTYYVMIDAYCREGN----VMEACKLKDEILVKGMPMSVAAYDALIQALCKKEE 929
Query: 307 ---IMSMLQDLNSNDFPLSI 323
++ +L ++ + F L +
Sbjct: 930 FFEVLKLLNEIGESGFRLGL 949
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS C++G +A+ ++ EM KG P+ Y II G R LL++ + M
Sbjct: 220 NMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDK 279
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D +++++ + L L +M D G+ TYN++++
Sbjct: 280 GLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDG 329
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
F N+I +FC + K F+ +++ + + ++I G C+ G+ EA +
Sbjct: 741 FIYNVILNFCCKEEK--FEKALDLFQEMLEKG---FASTVSFNTLIEGYCKSGKLQEANH 795
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L+EEM K P+ Y +I + G++ + +R+ +M+ +L Y
Sbjct: 796 LLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYH 855
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +S + ++M GI TY ++++
Sbjct: 856 NIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDA 888
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C+ + EA + EM + L P+ Y I GY + G +E +R N+M S
Sbjct: 500 SLIIGFCKAKRMEEARTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSC 559
Query: 254 GT 255
G
Sbjct: 560 GV 561
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 117/259 (45%), Gaps = 24/259 (9%)
Query: 60 LISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM-----RITEESWFQWNPKLV 114
LI F + S AL+ + + HP L + + L+ R++E F ++
Sbjct: 117 LIKCFCSCSKLPFALSTFGKI-TKLGFHPSLVTFSTLLHGLCVEDRVSEALHF-FHQICK 174
Query: 115 AEIIAF------LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
+IAF L ++G+ EA L L+ + + G + ++ Y ++D CK
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVAL-LDRMVEDGLQPNQIT--YGTIVDGMCK------M 225
Query: 169 DDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
DT + LN L +K + ++I GL + G+ +A+NL EM+ KG+ P+ F
Sbjct: 226 GDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFT 285
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y C+I G+ G + +R++ +M D V ++++++ + +M
Sbjct: 286 YNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEML 345
Query: 287 DSGIPFSVRTYNSVLNSCS 305
GI + TYNS+++ S
Sbjct: 346 PRGIIPNTITYNSMIDGFS 364
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 124/279 (44%), Gaps = 20/279 (7%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A L ++ E S + N + + II L K G++ +A+ L E K L + C
Sbjct: 231 ALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK--GISPNLFTYNC 288
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+I+ FC S + + L ++ S V +I+ L + G+ EAE L
Sbjct: 289 -MINGFC---SSGRWSEAQRLLREMFERKMSPDV--VTFSVLINALVKEGKFFEAEELYN 342
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM +G+ P+ Y +I G+ + L+ ER+ M + G D + ++++ Y
Sbjct: 343 EMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAK 402
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSV------LNSCSTIMSMLQDLNSNDFPLSILELT 327
+ + L +M G+ + TY ++ L + + + +LQ++ S+ +++
Sbjct: 403 RVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCN 462
Query: 328 EVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMH 366
+L + + +L+D+ + + M+ ++K+DL H
Sbjct: 463 TLL--DGLCNNGKLKDALEMFKVMQ----KSKMDLDASH 495
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 74/169 (43%), Gaps = 14/169 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYA 173
+I L +G+ EAE L E R LV + Y ++ID CK D+
Sbjct: 510 LICGLINEGKFSEAEELYEEM------PHRGLVPDTITYNSVIDGLCKQSR---LDEATQ 560
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S V ++I+G C++G+ + + EM +G+ + Y+ +I+G
Sbjct: 561 MFDSMGSKGFSPDV--VTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHG 618
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ ++G + I +M S G DT+ +L+ EL R V L
Sbjct: 619 FCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVQCL 667
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 51/114 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +I GL G+ EAE L EEM +GL P Y +I G + L++ ++ +
Sbjct: 505 QTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDS 564
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M S G D V +++ Y + + +M GI + TY ++++
Sbjct: 565 MGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHG 618
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ + EA + + M KG P + +I GY ++G + D + +M
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRR 603
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + ++ + ++ + Q+M SG+
Sbjct: 604 GIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGV 640
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 12/123 (9%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++++GLC G+ EA L++ M GL+P+ Y I+ G ++G ++ +M
Sbjct: 179 AFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKM 238
Query: 251 ESDGTRVDTVCSNMVLSS------YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS- 303
E V + N+V+ S + D + L+ +M++ GI ++ TYN ++N
Sbjct: 239 E----EVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLF-SEMQEKGISPNLFTYNCMINGF 293
Query: 304 CST 306
CS+
Sbjct: 294 CSS 296
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D CK+ R + A L + S+ ++ + I G+C G+ A +L
Sbjct: 417 LLDYLCKN---RYLAEAMALLKAIEGSNLDPDIQVNNIA--IDGMCRAGELEAARDLFSN 471
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ KGL+P + Y +I G R GLL++ ++ +M+ +G ++ N + + +NE
Sbjct: 472 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 531
Query: 275 LSRMVLWLQKMKDSGI 290
SR + LQ+M G
Sbjct: 532 TSRAIQLLQEMVARGF 547
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 79 HLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETL 138
H+L H AF + +I + Q + +I + +G+ EA L
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGH-QPDTATFTTLIRGIYVEGKIGEA----LHLF 154
Query: 139 SKL-GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197
K+ G R V+ Y LI+ CK + + Q N +V+ A ++I
Sbjct: 155 DKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ-KNCQPNVF----AYNTIID 209
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
LC+ Q EA NL EM KG+ P F Y +I+ L + + ++N+M
Sbjct: 210 SLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMP 269
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N V+ + +++ + KM G+ +V TY ++++
Sbjct: 270 DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 98/207 (47%), Gaps = 25/207 (12%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-- 160
+ + F +N II L K Q EA L E ++K S + + Y +LI + C
Sbjct: 198 QPNVFAYN-----TIIDSLCKDRQVTEAFNLFSEMVTKGISPD---IFTYNSLIHALCNL 249
Query: 161 ---KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
KH LN++V+S + + +++ LC+ G+ EA +++++M
Sbjct: 250 CEWKH--------VATLLNEMVDSK--IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQ 299
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+G+EP+ Y ++ G+ L +++ ++ + M G + + N +++ Y + +
Sbjct: 300 RGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDK 359
Query: 278 -MVLWLQKMKDSGIPFSVRTYNSVLNS 303
M L+ + + IP +V TY+++++
Sbjct: 360 AMYLFGEMCRQELIPDTV-TYSTLIHG 385
>gi|225423724|ref|XP_002276864.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g35130-like [Vitis vinifera]
Length = 587
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 8/180 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
++G E+AE I E L + G V Y L++++ S+ GF A + L+
Sbjct: 320 REGLCEKAEE-IFEQLQEAGLEPD--VYAYNALMEAY----SRAGFPYGAAEIFSLMQHM 372
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
R + M+ G +A+ + E M+ G+ P+ + ++ Y R G +
Sbjct: 373 GCE-PDRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYSRAGKVAK 431
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E IVNQM G + DT N +L+ YG + +M L M+ P + TYN ++N
Sbjct: 432 CEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGPYPADISTYNILIN 491
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S G+ + E ++ +M G++P F ++ YGRLG E ME ++ ME
Sbjct: 419 LLSAYSRAGKVAKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAMEKGP 478
Query: 255 TRVDTVCSNMVLSSYGDHNELSRM 278
D N++++ YG +RM
Sbjct: 479 YPADISTYNILINIYGRAGFFARM 502
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 5/108 (4%)
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
GLCE +AE + E+++ GLEP + Y ++ Y R G I + M+ G
Sbjct: 322 GLCE-----KAEEIFEQLQEAGLEPDVYAYNALMEAYSRAGFPYGAAEIFSLMQHMGCEP 376
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D N+++ +YG + MK GI +++++ +L++ S
Sbjct: 377 DRASYNIMVDAYGRAGLHEDAQAVFEVMKRLGITPTMKSHMLLLSAYS 424
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID++ + + + TY L + + ++ C G +A
Sbjct: 168 VICYNLLIDAYGQKSLYKKAESTYLELLE-----ARCVPTEDTYALLLKAYCTSGLLEKA 222
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E + EMR G PS Y I G + G + I +M+ D + T M+++
Sbjct: 223 EAVFAEMRKYGFPPSAVVYNAYIDGLMKGGDTQKAVEIFERMKRDRCQPSTATYTMLINL 282
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
YG ++ + +M+ ++ T+ +++N+
Sbjct: 283 YGKASKSYMALKVFHEMRSQKCKPNICTFTALVNA 317
Score = 38.1 bits (87), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 173 ARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE-YKC 229
A+ ++VN S + L SM++ +GQ + E ++ M KG P+ Y
Sbjct: 430 AKCEEIVNQMHKSGIKPDTFVLNSMLNLYGRLGQFEKMEEVLTAME-KGPYPADISTYNI 488
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I YGR G ME + + + D V + +Y + +R + ++M D+G
Sbjct: 489 LINIYGRAGFFARMEELFRSLPARNLIPDVVTWTSRIGAYSRRKQYNRCLEVFEEMIDAG 548
Query: 290 IPFSVRTYNSVLNSCS 305
T +L++CS
Sbjct: 549 CYPDGGTAKVLLSACS 564
>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like, partial [Cucumis sativus]
Length = 602
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+ + E++ +N +I + + + EEAE L E L K + V Y ++I+
Sbjct: 246 LSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD---VYIYTSIINW 302
Query: 159 FCKHDS-KRGF---DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
CK + KR F D+ R +LV ++ + ++I+G C+ G+ AE ++ +
Sbjct: 303 NCKFGNMKRAFVLFDEMTER--RLVPNAYT-------YGALINGACKAGEMKAAEMMVND 353
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ KG++ + + ++ GY + G++++ R+ N M+ G +D N++ S + N
Sbjct: 354 MQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNR 413
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
L M++ G+ +V +++ +++
Sbjct: 414 REEAKRLLLTMEERGVAPNVVSFSILID 441
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L Q+V+S + ++ + +++ GLC+ G+ A+ L++E+ KG +PS Y ++ GY
Sbjct: 176 LRQMVDSG--IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGY 233
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ + + I++ ME + + M++ Y +++ +M GI V
Sbjct: 234 IEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDV 293
Query: 295 RTYNSVLN 302
Y S++N
Sbjct: 294 YIYTSIIN 301
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 8/214 (3%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
I ++ F+ + I + + +REEA+ L+L T+ + G V+ + LID +C
Sbjct: 388 IMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLL-TMEERGVAPN--VVSFSILIDIYC 444
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
K + + + + + S V + I C+ G+ EA LI EM+ +GL
Sbjct: 445 KEQNFAEARRLFKVMEKKGKAPSVV-----TYNAFIERYCKKGKMEEAYKLINEMQERGL 499
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P + Y +I G G ++ + N+M G + V +++S
Sbjct: 500 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFK 559
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M GI Y+S++ S + ++ L
Sbjct: 560 LYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGL 593
>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g06710, mitochondrial; Flags: Precursor
gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
Length = 987
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HD 163
A LD K + EEA L L+ +S G ++V Y LID CK
Sbjct: 644 ALLDGFCKSHRVEEARKL-LDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEM 700
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKS--------------------MISGLCEMG 203
S+ GF T + L++ V KRQ L S MI GLC++G
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKV--KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA L++ M KG +P+ Y +I G+G +G +E ++ +M S G + V
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ + L L++MK + P Y V+
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVI 856
>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
Length = 912
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 103/244 (42%), Gaps = 16/244 (6%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LA ++ +I +E + + II K G E A+ + E +G + ++ Y
Sbjct: 235 LARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDE----MGCKPN--LVTY 288
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
+I+ FCK +G ++ ++ + + ++I G C+ G+ EA +
Sbjct: 289 NTMINGFCK----KGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYM 344
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EEM + EP+ Y IIYG G +++ +R++ +M +G + + +L
Sbjct: 345 EEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVV 404
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI------MSMLQDLNSNDFPLSILEL 326
+L L++M G+ + Y V+N I +S+L+++ S S+
Sbjct: 405 GKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSF 464
Query: 327 TEVL 330
V
Sbjct: 465 NAVF 468
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKH----DSKRGFDDTYARLNQ 177
K+G+ EEA ++ + ++ SR E VL Y +I C + ++KR T RLN
Sbjct: 333 KRGELEEA----MKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMM--TRMRLNG 386
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
L ++ ++ S++ GLC +G+ +A ++EM G+E Y ++ Y ++
Sbjct: 387 LKDNVAT-------HTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKI 439
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G +D ++ +M+S G N V + + + L L++MK G + +Y
Sbjct: 440 GKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSY 499
Query: 298 NSVLNS 303
++V++
Sbjct: 500 STVIDG 505
>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
Length = 797
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 98/228 (42%), Gaps = 41/228 (17%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---DSK 165
P +V A +I +GQ ++A L LE + + G + V+ Y +ID CK D
Sbjct: 201 PNVVSYATVINGFFTEGQVDKAYNLFLEMMDR-GIQPN--VVTYTTVIDGLCKAQVVDRA 257
Query: 166 RGF------------DDTYARLNQLVNSSSSVYVKRQALK------------------SM 195
G +DTY N L++ S+ ++ ++ S+
Sbjct: 258 EGVFQQMIDKGVKPDNDTY---NCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSL 314
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
++ LC G+ EA + M KG++P+ Y +I+GY G L +M ++N M +G
Sbjct: 315 LNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGL 374
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N++ ++Y + + KMK G+ V + +++++
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDA 422
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 96/210 (45%), Gaps = 7/210 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
F + I + W + N ++ +++ L + EA ++++ + +LG V+ Y
Sbjct: 113 GFATFGLILKSGW-RVNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPD--VVSYN 169
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVKRQALKSMISGLCEMGQPHEAENLI 212
L+ FC + KR ++ L+ + +S S + ++I+G GQ +A NL
Sbjct: 170 TLLKGFC--NEKRA-EEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQVDKAYNLF 226
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
EM +G++P+ Y +I G + +++ E + QM G + D N ++ Y
Sbjct: 227 LEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSI 286
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +V L++M G+ TY S+LN
Sbjct: 287 GKWKEVVRMLEEMSAHGLKPDCYTYGSLLN 316
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 6/136 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C +G+ EA ++ M GL+P + Y +++GY R G ++D + +M +
Sbjct: 523 TLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRN 582
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
G V + +L S M SG +++ YN +LN S
Sbjct: 583 GITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEA 642
Query: 308 MSMLQDLNSNDFPLSI 323
+ Q L S DF L I
Sbjct: 643 FKLFQSLCSKDFQLEI 658
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ AE + ++M KG++P Y C+I+GY +G +++ R++ +M +
Sbjct: 243 TVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAH 302
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST--IMSML 311
G + D +L+ ++ + M GI +V Y +++ +T +S +
Sbjct: 303 GLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEM 362
Query: 312 QDL 314
DL
Sbjct: 363 HDL 365
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 48/113 (42%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G G E +L+ M GL P + I Y + ++++ I N+M+ G
Sbjct: 349 LIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQG 408
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
D V ++ + + VL +M + G+ ++ +NS++ T+
Sbjct: 409 LSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTV 461
Score = 38.9 bits (89), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 59/130 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC++G+ +A +M +G+ P+ F + ++YG + E + +M +
Sbjct: 418 ALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQ 477
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G R D V N +L + ++ + + M+ G V +Y +++ + + +
Sbjct: 478 GIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEA 537
Query: 314 LNSNDFPLSI 323
S D LS+
Sbjct: 538 AKSLDVMLSV 547
>gi|357467093|ref|XP_003603831.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492879|gb|AES74082.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 530
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 86/199 (43%), Gaps = 13/199 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ L K+ + EAE L + V+ Y +L+ +C+ ++ ++ +
Sbjct: 219 VISSLCKKRRASEAELF----FDSLKHKFEPDVIVYTSLVHGWCRAGDIAKAEEVFSDMK 274
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ +VY +I LC GQ A ++ EM G +P+ + ++ + +
Sbjct: 275 E-AGVKPNVY----TYSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNAVTFNSLMRVHVK 329
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G E + ++ NQM+ G DT+ N ++ S+ L V L M G+ + T
Sbjct: 330 AGRTEKVLQVYNQMKRLGCAADTISYNFLIESHCKDENLDEAVKVLDTMVKKGVAPNAST 389
Query: 297 YNSVLNSCSTIMSMLQDLN 315
+NS+ ++ L D+N
Sbjct: 390 FNSIFGC----IAELHDVN 404
>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Cucumis sativus]
Length = 606
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+ + E++ +N +I + + + EEAE L E L K + V Y ++I+
Sbjct: 250 LSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPD---VYIYTSIINW 306
Query: 159 FCKHDS-KRGF---DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
CK + KR F D+ R +LV ++ + ++I+G C+ G+ AE ++ +
Sbjct: 307 NCKFGNMKRAFVLFDEMTER--RLVPNAYT-------YGALINGACKAGEMKAAEMMVND 357
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ KG++ + + ++ GY + G++++ R+ N M+ G +D N++ S + N
Sbjct: 358 MQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNR 417
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
L M++ G+ +V +++ +++
Sbjct: 418 REEAKRLLLTMEERGVAPNVVSFSILID 445
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 63/128 (49%), Gaps = 2/128 (1%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L Q+V+S + ++ + +++ GLC+ G+ A+ L++E+ KG +PS Y ++ GY
Sbjct: 180 LRQMVDSG--IEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGY 237
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ + + I++ ME + + M++ Y +++ +M GI V
Sbjct: 238 IEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDV 297
Query: 295 RTYNSVLN 302
Y S++N
Sbjct: 298 YIYTSIIN 305
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 88/214 (41%), Gaps = 8/214 (3%)
Query: 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160
I ++ F+ + I + + +REEA+ L+L T+ + G V+ + LID +C
Sbjct: 392 IMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLL-TMEERGVAPN--VVSFSILIDIYC 448
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
K + + + + + S V + I C+ G+ EA LI EM+ +GL
Sbjct: 449 KEQNFAEARRLFKVMEKKGKAPSVV-----TYNAFIERYCKKGKMEEAYKLINEMQERGL 503
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P + Y +I G G ++ + N+M G + V +++S
Sbjct: 504 MPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFK 563
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M GI Y+S++ S + ++ L
Sbjct: 564 LYDEMNKEGIVPDDGIYSSLIASLHKVGPLVSGL 597
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 14/133 (10%)
Query: 195 MISGLCEMG-------QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
I GLC G + EAEN + +M KGLEP F Y IIYGY ++G ++D RI+
Sbjct: 257 FIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRIL 316
Query: 248 NQMESDGTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ G D T CS +++ D ++ + ++ G+ S+ YN+++ S
Sbjct: 317 KDAKFKGFVPDEFTYCS-LIIGVCQD-GDIDHALALFEEALGKGLKPSIVLYNTLIKGLS 374
Query: 306 T---IMSMLQDLN 315
++ LQ +N
Sbjct: 375 QQGLVLKALQLMN 387
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI C+ D L + + S +Y ++I GL + G +A
Sbjct: 331 YCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLY------NTLIKGLSQQGLVLKALQ 384
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L+ +M +G+ P + Y +I G ++G + D ++N + G D N ++ Y
Sbjct: 385 LMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYC 444
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + L M G+ V TYNS+LN
Sbjct: 445 KRLKMDNAIGILDSMWSHGVTPDVITYNSILNG 477
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ + EA +L+EE+R +GL P + +I G+ G L++ ++ +ME
Sbjct: 509 LIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQY 568
Query: 255 TRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
TV + N++++++ + ++ +M D G TY +++ + +
Sbjct: 569 RICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKV----GN 624
Query: 314 LNSN-DFPLSILELTEV 329
+NS DF L +E+ V
Sbjct: 625 VNSGYDFLLKEIEIGFV 641
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/123 (20%), Positives = 54/123 (43%), Gaps = 1/123 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++G+ +A ++++ + KG P F Y +I G + G ++ + +
Sbjct: 298 TIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGK 357
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + V N ++ + + + + M G+ + TYN V+N M + D
Sbjct: 358 GLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCK-MGCVSD 416
Query: 314 LNS 316
N+
Sbjct: 417 ANN 419
>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 997
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HD 163
A LD K + EEA L L+ +S G ++V Y LID CK
Sbjct: 644 ALLDGFCKSHRVEEARKL-LDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEM 700
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKS--------------------MISGLCEMG 203
S+ GF T + L++ V KRQ L S MI GLC++G
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKV--KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA L++ M KG +P+ Y +I G+G +G +E ++ +M S G + V
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ + L L++MK + P Y V+
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVI 856
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D CK+ R + A L + S+ ++ + I G+C G+ A +L
Sbjct: 471 LLDYLCKN---RYLAEAMALLKAIEGSNLDPDIQVNNIA--IDGMCRAGELEAARDLFSN 525
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ KGL+P + Y +I G R GLL++ ++ +M+ +G ++ N + + +NE
Sbjct: 526 LSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 585
Query: 275 LSRMVLWLQKMKDSGIPFSVRT 296
SR + LQ+M G T
Sbjct: 586 TSRAIQLLQEMVARGFSADAST 607
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 79 HLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETL 138
H+L H AF + +I + Q + +I + +G+ EA L
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGH-QPDTATFTTLIRGICVEGKIGEA----LHLF 154
Query: 139 SKL-GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197
K+ G R V+ Y LI+ CK + + Q N +V+ A ++I
Sbjct: 155 DKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ-KNCQPNVF----AYNTIID 209
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
LC+ Q EA NL EM KG+ P F Y +I+ L + + ++N+M
Sbjct: 210 SLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMP 269
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N V+ + +++ + KM G+ +V TY ++++
Sbjct: 270 DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315
Score = 44.7 bits (104), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 75/158 (47%), Gaps = 18/158 (11%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-----KHDSKRGFDDT 171
II L K Q EA L E ++K S + + Y +LI + C KH
Sbjct: 207 IIDSLCKDRQVTEAFNLFSEMVTKGISPD---IFTYNSLIHALCNLCEWKH--------V 255
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
LN++V+S + + +++ LC+ G+ EA +++++M +G+EP+ Y ++
Sbjct: 256 ATLLNEMVDSK--IMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALM 313
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
G+ L +++ ++ + M G + + N +++ Y
Sbjct: 314 DGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351
>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At2g02150
gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 761
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A L EEM+ +GL P Y +I G+G++G L+D +M+
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + ++MK +G+ +V +Y++++++
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ ++G+ + + ++M G P+ F Y +I + G +E
Sbjct: 223 VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ +G L V + ++MKD V TYN+++N
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ +C LID CK+ D + R +++ + +MI GLC+ Q A
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNR----ISNDFGLQANAAIFTAMIDGLCKDNQVEAA 632
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E+M KGL P Y ++ G + G + + + ++M G ++D + ++
Sbjct: 633 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 692
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
N+L + +L++M GI
Sbjct: 693 LSHCNQLQKARSFLEEMIGEGI 714
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID C + + ++ + +++ ++ V + ++I G + A
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMD-----TAGVIPNLASYNALIHGFVKAKNMDRA 491
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ E++ +G++P Y I+G L +E + ++N+M+ G + +++ ++ +
Sbjct: 492 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 551
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + L +MK+ I +V T+ +++
Sbjct: 552 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ C+ G +A +MR GL P+ + Y +I ++G L D R+ N+M
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V ++ D + KM +G+ ++ +YN++++
Sbjct: 432 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 481
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 141 LGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197
+G+ R V Y +ID CK ++ RG + + LV + + SMI
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE-MKFRGLVPDTVT-------YNSMID 305
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G ++G+ + EEM+ EP Y +I + + G L +M+ +G +
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ + + + + M+ G+ + TY S++++
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
G+ + V+ Y L+D+FCK + Y + ++ + S+I C+
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV-----GLVPNEYTYTSLIDANCK 414
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+G +A L EM G+E + Y +I G +++ E + +M++ G +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N ++ + + R + L ++K GI + Y + +
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514
>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
Length = 601
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 43/237 (18%)
Query: 60 LISKFVASSPQFIALNALSHLLS----PDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA 115
LI F+ +A+N +S L+S PD+ F + I S W
Sbjct: 368 LIGGFLRVHKVNMAMNLMSELISSGLEPDS---------FTYSILINGFSKL-WEVDRAE 417
Query: 116 EIIAFLDKQGQREEAETLI--LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
+ + ++G R E I L L +LG E+ +VLF N +D C D+
Sbjct: 418 MFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLF--NEMDMNCGLDA--------- 466
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
A +M+ G C+ G A+ L+++M +GL P Y +I
Sbjct: 467 ----------------VAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILINM 510
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ +LG LE+ ER++ QM + G D + ++ Y ++++++ + +M+ +
Sbjct: 511 FAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRAKNV 567
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 77/186 (41%), Gaps = 5/186 (2%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+ A + G +A +L+ + + R + Y ++ C + R D+ A L
Sbjct: 83 LAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLC---ASRRTDEAVALLR 139
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ +S V ++I GLC+ + A L+ EM G+ P+ Y C++ GY R
Sbjct: 140 SM--QASGVRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCR 197
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +D+ ++ +M G D + + + + V M G+ +V T
Sbjct: 198 SGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVT 257
Query: 297 YNSVLN 302
YN ++N
Sbjct: 258 YNVLIN 263
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 81/184 (44%), Gaps = 8/184 (4%)
Query: 135 LETLSKL-GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
LE L ++ GS V+ Y L+ +C+ + + +++L +
Sbjct: 170 LELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIM-----FT 224
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
I LC+ G+ +A + + M +GLEP+ Y +I + G + + + N+M+
Sbjct: 225 GFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDK 284
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM--KDSGIPFSVRTYNSVLNSCSTIMSML 311
G D V N +++ E+ + L++M D+ + V T+NSV++ I M
Sbjct: 285 GVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMR 344
Query: 312 QDLN 315
Q ++
Sbjct: 345 QAIS 348
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 57/280 (20%), Positives = 110/280 (39%), Gaps = 24/280 (8%)
Query: 46 LALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPD-----TTHPRLSSL------- 93
LA+ + R A+ L+++ + ++P A + LS L PD + + L++L
Sbjct: 36 LAVLLRRGRADAAALLNRRLRAAPVTEACSLLSAL--PDVRDAVSYNIVLAALCRRGGDL 93
Query: 94 --AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETL-ILETLSKLGSRERELVL 150
A L ++ E+ P V+ + R E + +L ++ G R V+
Sbjct: 94 RQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRAD--VV 151
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LI C D L ++ S V+ ++ G C G+ +
Sbjct: 152 TYGTLIRGLCDAAE---LDGALELLGEM--CGSGVHPNVIVYSCLLRGYCRSGRWQDVSK 206
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ EEM G+EP + I + G + ++ + M G + V N++++
Sbjct: 207 VFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLC 266
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ + +M D G+ V TYN+++ S ++ M
Sbjct: 267 KEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSGVLEM 306
>gi|356569072|ref|XP_003552730.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 509
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 57/107 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LCE G+ +A + + +M+V+G++PS Y II+G R G D R +++M+ G
Sbjct: 143 IIGLLCEGGKMEDALSALRDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESG 202
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+D+ + +L +YG M ++KM+ G TYN ++
Sbjct: 203 LELDSETYDGLLGAYGKFQMYDEMGECVKKMELEGCSPDHITYNILI 249
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 68/147 (46%), Gaps = 3/147 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL G+ +A I+EM+ GLE Y ++ YG+ + ++M V +ME +G
Sbjct: 178 IIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLLGAYGKFQMYDEMGECVKKMELEG 237
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D + N+++ Y L RM Q+M + T ++L + +T M++ +
Sbjct: 238 CSPDHITYNILIQEYARAGLLQRMEKLYQRMVSKRMHVQSSTLVAMLEAYTTF-GMVEKM 296
Query: 315 NSNDFPLSILELTEVLNEEEVSVVKEL 341
+F IL L ++ + V E+
Sbjct: 297 --ENFYRKILSSKTCLEDDLIRKVAEV 321
>gi|356540106|ref|XP_003538531.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14190,
chloroplastic-like [Glycine max]
Length = 506
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 58/107 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LCE G+ +A + +++M+V+G++PS Y II+G R G D R +++M+ G
Sbjct: 141 IIGLLCEGGKMKDALSALQDMKVQGIKPSLDTYNPIIHGLSREGKFSDALRFIDEMKESG 200
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+D+ + ++ +YG M ++KM+ G TYN ++
Sbjct: 201 LELDSETYDGLIGAYGKFQMYDEMGECVKKMELEGCSPDPITYNILI 247
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL G+ +A I+EM+ GLE Y +I YG+ + ++M V +ME +G
Sbjct: 176 IIHGLSREGKFSDALRFIDEMKESGLELDSETYDGLIGAYGKFQMYDEMGECVKKMELEG 235
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
D + N+++ Y L RM Q+M
Sbjct: 236 CSPDPITYNILIQEYAGGGLLQRMEKLYQRM 266
>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
Length = 796
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC M + EA + + E KGL P Y II+ Y + G LE+ R N+M +
Sbjct: 529 TLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLENAFRFHNKMVEN 588
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N +++ H +L + + + + G V TYN+++ S
Sbjct: 589 SFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITYNTLIQS 638
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%), Gaps = 2/109 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C+ G +A L++EM KGL+ F ++Y ++ ED E +++
Sbjct: 424 TLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQR 483
Query: 254 GTRVDTVCSNMVLSSY-GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D V V+++Y ++N + LW Q ++ IP S+ TYN+++
Sbjct: 484 GFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIP-SISTYNTLI 531
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 56/111 (50%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++S +G +A ++E M G EP Y + G + G +++ R+ ++ME
Sbjct: 283 TLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERL 342
Query: 254 GTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GT + D V N ++ + S + L++M+D G+ ++ T+N V+ S
Sbjct: 343 GTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKS 393
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L+EEMR KG++P+ + ++ + G LE+ + ++ +G D + N ++
Sbjct: 367 DALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLI 426
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
+Y +++ + +M G+ T N+VL N C
Sbjct: 427 DAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLC 465
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 39/82 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I +C++G A + ++M VKGL+P F Y ++ G E+ +++++
Sbjct: 634 TLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLHKLADS 693
Query: 254 GTRVDTVCSNMVLSSYGDHNEL 275
G + ++ S D ++
Sbjct: 694 GKLSQSFACPLLKPSSADEADV 715
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I ++CK ++ + N++V +S V ++++GLC G+ +A L
Sbjct: 562 YNIIIHAYCKEGD---LENAFRFHNKMVENSFKPDV--VTCNTLMNGLCLHGKLDKALKL 616
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E KG + Y +I ++G ++ + ME G + D N+VLS+ +
Sbjct: 617 FESWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSE 676
Query: 272 HNELSRMVLWLQKMKDSG 289
L K+ DSG
Sbjct: 677 AGRSEEAHNMLHKLADSG 694
>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
Length = 703
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 89/201 (44%), Gaps = 18/201 (8%)
Query: 109 WNP--KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---- 162
W P + A ++ F + + +EAE ++ E K + V+ +I+++CK
Sbjct: 143 WRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLA---PCVVTCTAVINAYCKEGRMS 199
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+ R + L +L +V+ +++ G C G+ H+A L+ +MRV G+ P
Sbjct: 200 DALRVLE-----LMKLRGCKPNVWT----YNALVQGFCNEGKVHKAMALLNKMRVCGVNP 250
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G G +E R++ ME DG D N ++++ +
Sbjct: 251 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 310
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
++ GI + T+NS++N
Sbjct: 311 DSLETRGIKPNAVTFNSLING 331
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 15/209 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A +L ++L G + + + +LI+ CK D + L
Sbjct: 293 LINALCKDGRTDQACSL-FDSLETRGIKPNAVT--FNSLINGLCKSGK---VDIAWKFLE 346
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V S+ S I LC+M E + I EM K ++PS Y +I+ +
Sbjct: 347 KMV--SAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLK 404
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ R +M S G D V + +Y L+ L +M +G+
Sbjct: 405 ERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMA 464
Query: 297 YNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
YN++++ ++I D +SIL+
Sbjct: 465 YNTLMDGHASI-------GQTDHAVSILK 486
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 69/185 (37%), Gaps = 44/185 (23%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG----- 203
V+ Y LI+ FC+ D+ ++ +Y +++ GLC+ G
Sbjct: 81 VVSYAALIEGFCETGR---IDEAVELFGEMDQPDMHMYA------ALVKGLCKAGRGEEG 131
Query: 204 ------------------------------QPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ EAE +++EM KGL P +I
Sbjct: 132 LLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAVINA 191
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + G + D R++ M+ G + + N ++ + + ++ + + L KM+ G+
Sbjct: 192 YCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPD 251
Query: 294 VRTYN 298
TYN
Sbjct: 252 AVTYN 256
>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC+ G A +L +M+ G P Y +I G+G+LGLL++ I QM+
Sbjct: 62 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + + + +L +MK +G+ +V TY++ +++
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDA 170
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/364 (19%), Positives = 155/364 (42%), Gaps = 48/364 (13%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
P I NAL + P+ AF ++ + + + N + I K+G
Sbjct: 123 DPDVITYNALINCFCKFERMPK----AFE-FLHEMKANGLKPNVVTYSTFIDAFCKEGML 177
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA ++ + ++ E Y +LID+ CK + A +LV +
Sbjct: 178 QEAIKFFVD-MRRVALTPNEFT--YTSLIDANCKAGN-------LAEALKLVEEILQAGI 227
Query: 188 KRQALK--SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
K + +++ GLCE G+ EAE + M G+ P+ Y +++G+ + +E +
Sbjct: 228 KLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKD 287
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-- 303
I+ +M+ + D + +L + + L L + ++K+SGI + Y +++++
Sbjct: 288 ILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYF 347
Query: 304 ----CSTIMSMLQDL--------NSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
+ +++L+++ +N F ++ E+L++ + ++ ++++D M
Sbjct: 348 KSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMP--DKIAYTALIDGNM 405
Query: 352 KWDSGETKLDLH------GMHLGSAYFIILQW-------MDEMRNRFNN--EKHVIPAEI 396
K + + L+L GM L + L W + + RN + K V+P E+
Sbjct: 406 KHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEV 465
Query: 397 TVVC 400
+C
Sbjct: 466 VYMC 469
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 57/118 (48%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ +++ L ++G+ + ++M G++ S F Y +I + G LE
Sbjct: 17 VFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMAR 76
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ QM+ G D V N ++ +G L + ++MKD+ V TYN+++N
Sbjct: 77 SLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALIN 134
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 58/270 (21%), Positives = 101/270 (37%), Gaps = 62/270 (22%)
Query: 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHL----LSPD- 84
C R+ + + F + L V + + + L+ F+ + A + L + + PD
Sbjct: 242 CEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDL 301
Query: 85 ----------TTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134
RL L + +ES N + ++ K GQ EA TL+
Sbjct: 302 LLYGTILWGLCNESRLEEA--KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLL 359
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDD-------------------- 170
E L +L+D CK++ +K+ FD+
Sbjct: 360 EEML---------------DLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGN 404
Query: 171 -TYARLNQLVNSSS-----SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ L + +N + + A ++I GL GQ +A NL++EM KG+ P
Sbjct: 405 MKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDE 464
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
Y C+I Y LG +++ + N+M G
Sbjct: 465 VVYMCLIKKYYALGKVDEALELQNEMAKRG 494
>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
Length = 734
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 12/196 (6%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRG 167
P +V +I L K G+ ++AE + +++ +V+F +L+ C D +R
Sbjct: 342 PNVVNYGALIDALCKLGRVDDAEVKFNQMINE--GVTPNIVVFN-SLVYGLCTVDKWERA 398
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+ Y L+Q + ++ + ++I LC +G+ E LI+ M G+ P F Y
Sbjct: 399 EELVYEMLDQGICPNAVFF------NTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSY 452
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I GY G ++ E++ + M S G V N +L Y + + ++M
Sbjct: 453 TPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLR 512
Query: 288 SGIPFSVRTYNSVLNS 303
G+ V TYN++L+
Sbjct: 513 KGVTPGVVTYNTILHG 528
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISG C G+ EAE + + M GL P+ Y +++GY ++D + +M G
Sbjct: 455 LISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 514
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
V N +L S M +SG + TYN +LN C +
Sbjct: 515 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 574
Query: 309 SMLQDLNSNDFPLSILELT 327
M Q L S L+I+ T
Sbjct: 575 KMFQSLCSKGLQLNIITFT 593
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
+ + EEA L+ + G V+ Y +ID CK + FD Q++++
Sbjct: 181 NENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCK---AQLFDRAEGVFQQMIDNG 237
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V +I G +G+ E ++E+M +GL+P + Y ++ L L +
Sbjct: 238 --VKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLL---NYLCALSE 292
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M ++ M +G D N+ S+Y + + + KM+ G+ +V Y ++++
Sbjct: 293 MHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALID 352
Query: 303 S 303
+
Sbjct: 353 A 353
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 92/206 (44%), Gaps = 10/206 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
+F + I + W + N ++ +++ L + EA ++L+ + +LG + Y
Sbjct: 117 SFATFGLILKTGW-RVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVS--YS 173
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVKRQALKSMISGLCEMGQPHEAENLI 212
L+ FC + ++ L + N S ++I GLC+ AE +
Sbjct: 174 ILLKGFCNENRA---EEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVF 230
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
++M G++P+ Y C+I+GY +G +++ +++ +M + G + D +L+
Sbjct: 231 QQMIDNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLC-- 288
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYN 298
LS M +L M ++G+ +N
Sbjct: 289 -ALSEMHSFLDLMVENGLSPDHHIFN 313
Score = 39.7 bits (91), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
S + G +A ++ +MR GL P+ Y +I +LG ++D E NQM ++G
Sbjct: 315 FFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEG 374
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCST 306
+ V N ++ ++ R + +M D GI + +N+++ N C+
Sbjct: 375 VTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNV 427
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 48/111 (43%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++ G C + +A L EM KG+ P Y I++G + + + + M +
Sbjct: 488 NTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMIN 547
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GT+ D N++L+ N + Q + G+ ++ T+ ++ +
Sbjct: 548 SGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 598
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEM---RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++ G C + EA L+ M + P+ Y +I G + L + E + QM
Sbjct: 175 LLKGFCNENRAEEALELLRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMI 234
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+G + + N ++ Y + +V L+KM G+ TY S+LN
Sbjct: 235 DNGVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLN 285
>gi|125579821|gb|EAZ20967.1| hypothetical protein OsJ_36620 [Oryza sativa Japonica Group]
Length = 408
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC+ A+N++EEM K ++P F Y +I G+ R L D +I ME G
Sbjct: 156 LISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 215
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++ Y +S +L + M+ G TY +V++
Sbjct: 216 VCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 264
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 66/155 (42%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y ++ID+ C + R L Q+ S + ++I+GLC G +A
Sbjct: 10 VQIYNSVIDALC---NCRSATQAMVILKQMFASGCDPDII--TFNTLITGLCHEGHVRKA 64
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+ + E + L P+ Y +I+G+ G L ++ +M G D V ++
Sbjct: 65 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 124
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++S ++ +KM + + V YN +++
Sbjct: 125 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 159
>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 500
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 8/189 (4%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ +I K+GQ EA+ E + + + ++ Y +LI+ C H D+
Sbjct: 258 SALIDVYGKEGQLLEAKKQYNEMIQRSVNPN---IVTYNSLINGLCIHGL---LDEAKKV 311
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
LN LV S + ++I+G C+ + + ++ M G++ F Y + GY
Sbjct: 312 LNVLV--SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G E+++ +M S G D N++L DH ++ + ++ L+ ++ S +
Sbjct: 370 CQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGI 429
Query: 295 RTYNSVLNS 303
TYN ++
Sbjct: 430 ITYNIIIKG 438
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 30/182 (16%)
Query: 152 YCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSSSVYVKRQAL------- 192
+ LID FC+ K GF+ + LVN V +A+
Sbjct: 117 FTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIV 176
Query: 193 -----------KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++I LCE GQ + A ++++ M+ G+ P Y +I G
Sbjct: 177 GLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWG 236
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
RI++ M G D + + ++ YG +L +M + ++ TYNS++
Sbjct: 237 VSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLI 296
Query: 302 NS 303
N
Sbjct: 297 NG 298
>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
Length = 696
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 83/208 (39%), Gaps = 33/208 (15%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK---HDSKRGFDDTYARLNQLVNS 181
GQ EA IL+ +S+ G R V+ Y LID CK H R ++ + Q N+
Sbjct: 336 GQWTEA-VRILKEMSRDGQRPN--VVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNA 392
Query: 182 SS---------------------------SVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
S+ + R I C+ G+ EA +
Sbjct: 393 STYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNK 452
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ +G P Y +I G ++G L+D QM DG D + N ++ + H +
Sbjct: 453 MQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGK 512
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M D GIP +V T+NS+++
Sbjct: 513 WEKAEELFYEMMDRGIPPNVNTFNSMID 540
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G EA + M G +P+ Y +++GY G L DM + + M +G
Sbjct: 363 LIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNG 422
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
R N+ + +Y L L KM+ G + Y +V++ I
Sbjct: 423 MRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKI 475
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC++ +AE ++++M + + P+ Y +I+GY G + RI+ +M D
Sbjct: 292 SVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRD 351
Query: 254 GTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G R + V +M+ L G H E + M SG + TY S+L+ +T ++
Sbjct: 352 GQRPNVVTYSMLIDCLCKSGLHAEAREI---FNSMIQSGQKPNASTYGSLLHGYATEGNL 408
Query: 311 LQDLNSNDF 319
+ N D
Sbjct: 409 VDMNNVKDL 417
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 101/250 (40%), Gaps = 48/250 (19%)
Query: 172 YARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAENLI-EEMRVKGLEPSGFEYK 228
+A L Q++ + ++ QA+ ++ LC + +A N++ M G P F Y
Sbjct: 164 FAALGQIIKTG----LRAQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYT 219
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRV--DTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
++ G E+ +++ M DG + V V+ + ++ + KM
Sbjct: 220 TLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKML 279
Query: 287 DSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
D GIP +V T NSV++ + +M ++ +V++++ D +
Sbjct: 280 DHGIPPNVVTCNSVIDGLCKVQAM---------------------DKAEAVLQQMIDEHI 318
Query: 347 LDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMR-----NRFNNEKHVIPAE--ITVV 399
+ ++S +HG +L S QW + +R +R +V+ I +
Sbjct: 319 MPNCTTYNS-----LIHG-YLSSG-----QWTEAVRILKEMSRDGQRPNVVTYSMLIDCL 367
Query: 400 CGSGKHSTVR 409
C SG H+ R
Sbjct: 368 CKSGLHAEAR 377
>gi|357448559|ref|XP_003594555.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483603|gb|AES64806.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 639
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/257 (20%), Positives = 109/257 (42%), Gaps = 18/257 (7%)
Query: 47 ALAVTRDSKAASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
ALA R + A L SK V P + L ++L + +L + I E
Sbjct: 302 ALAKGRMADKAVLLFSKMVENGCQPNEFTYSVLLNVLVAEGQLNKLDN--------IVEM 353
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S N ++ A + L K G EA L + +++ Y ++++S C
Sbjct: 354 SKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDA---YMSMLESLCSSGK 410
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D R ++ ++ ++ ++ + L + Q +L E+M+ G P
Sbjct: 411 IAEAIDLLNRFHEKCITTDTI-----MYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDI 465
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
F Y +I YGR G ++ +I ++E+ + D + N +++ G + ++ + ++
Sbjct: 466 FTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISYNSLINCLGKNGDVDEAHMRFKE 525
Query: 285 MKDSGIPFSVRTYNSVL 301
M++ G+ V TY++++
Sbjct: 526 MQEKGLNPDVVTYSTLI 542
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 26/185 (14%)
Query: 118 IAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177
I + K+ ++ + TLSKLG LF CN+ + HD +G D Y
Sbjct: 350 IVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLF-CNMWNV---HD--KGDKDAYM---- 399
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
SM+ LC G+ EA +L+ K + Y + GRL
Sbjct: 400 ----------------SMLESLCSSGKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRL 443
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + + +M+ DG D N+++SSYG + V +++++S V +Y
Sbjct: 444 KQVSHIHDLYEKMKQDGPPPDIFTYNILISSYGRAGRVDSAVKIFEELENSNCQPDVISY 503
Query: 298 NSVLN 302
NS++N
Sbjct: 504 NSLIN 508
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 18/186 (9%)
Query: 130 AETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA----------RLNQLV 179
A ++E L+K G + VL + ++++ C+ + + TY+ +LN+L
Sbjct: 295 AYNTMIEALAK-GRMADKAVLLFSKMVENGCQPN-----EFTYSVLLNVLVAEGQLNKLD 348
Query: 180 N--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
N S Y+ +Q + L ++G EA L M + Y ++
Sbjct: 349 NIVEMSKKYMNKQIYAYFVRTLSKLGHSSEAHRLFCNMWNVHDKGDKDAYMSMLESLCSS 408
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G + + ++N+ DT+ N V ++ G ++S + +KMK G P + TY
Sbjct: 409 GKIAEAIDLLNRFHEKCITTDTIMYNTVFTALGRLKQVSHIHDLYEKMKQDGPPPDIFTY 468
Query: 298 NSVLNS 303
N +++S
Sbjct: 469 NILISS 474
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
++ + +L+ C D +R + Y L+Q + ++ + ++I LC +G+ E
Sbjct: 444 IVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFF------NTLICNLCNVGRVME 497
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
LI+ M G+ P F Y +I GY G ++ E++ + M S G V N +L
Sbjct: 498 GRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLH 557
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + ++M G+ V TYN++L+
Sbjct: 558 GYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHG 593
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISG C G+ EAE + + M GL P+ Y +++GY ++D + +M G
Sbjct: 520 LISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
V N +L S M +SG + TYN +LN C +
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 639
Query: 309 SMLQDLNSNDFPLSILELT 327
M Q L S L+I+ T
Sbjct: 640 KMFQSLCSKGLQLNIITFT 658
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ LC+ G+ EA + M KG++P Y +I+GY G L +M ++ M +
Sbjct: 309 SLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N+ S+Y + + + KM+ G+ +V Y +++++
Sbjct: 369 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDA 418
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 55/113 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ AE + ++M G +P+ + Y C+I+GY +G +++ +++ +M +
Sbjct: 239 TVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSAR 298
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
G + D +L+ + + M GI V TY +++ +T
Sbjct: 299 GLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYAT 351
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G GQ + NL EM +G+ P Y +I G + L + E + QM +G
Sbjct: 205 VINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNG 264
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + N ++ Y + +V L++M G+ TY S+LN
Sbjct: 265 FKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLN 312
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 9/193 (4%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
++ +L K G+ EA +++ + G + + V Y LI + +K + ++
Sbjct: 308 GSLLNYLCKNGRCREAR-FFFDSMIRKGIKPK--VSTYGILIHGYA---TKGALSEMHSF 361
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L+ +V + S S + G +A ++ +MR GL P+ Y +I
Sbjct: 362 LDLMVENGLSP--DHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDAL 419
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+LG ++D E NQM ++G + V N ++ ++ R + +M D GI +
Sbjct: 420 CKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNA 479
Query: 295 RTYNSVL-NSCST 306
+N+++ N C+
Sbjct: 480 VFFNTLICNLCNV 492
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G C + +A L EM KG+ P Y I++G + + + + M +
Sbjct: 554 TLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS 613
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GT+ D N++L+ N + Q + G+ ++ T+ ++ +
Sbjct: 614 GTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 663
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC+ A+N++EEM K ++P F Y +I G+ R L D +I ME G
Sbjct: 1229 LISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 1288
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++ Y +S +L + M+ G TY +V++
Sbjct: 1289 VCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 1337
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV +I +L K+G E+ +L LE + K G V Y ++ID+ C + R
Sbjct: 1046 PTLVTYGSLINWLGKKGDLEKIGSLFLE-MRKRGFSPN--VQIYNSVIDALC---NCRSA 1099
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
L Q+ S + ++I+GLC G +AE+ + E + L P+ Y
Sbjct: 1100 TQAMVILKQMFASGCDPDII--TFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 1157
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I+G+ G L ++ +M G D V ++ ++S ++ +KM +
Sbjct: 1158 PLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTER 1217
Query: 289 GIPFSVRTYNSVLNS 303
+ V YN +++
Sbjct: 1218 QVFPDVNIYNVLISG 1232
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+++ +D+ + + N S+ V V+ GLC + E LIE G P
Sbjct: 961 DARKLYDEMLGKDSGADNYSTCVLVR---------GLCLERRVEEGLKLIEARWGAGCIP 1011
Query: 223 SGFEYKCIIYGYGRLGLLEDMER---IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
Y +I GY R G DM R ++ +ME++G V +++ G +L ++
Sbjct: 1012 HVVFYNVLIDGYCRRG---DMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKIG 1068
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M+ G +V+ YNSV+++ S Q +
Sbjct: 1069 SLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAM 1103
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G +A + E M KG+ P +I GY + G++ + ++ M
Sbjct: 1263 TLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 1322
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D V+S Y L+ + WL M +V TY+S++N C T
Sbjct: 1323 GCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 1376
>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
Length = 946
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HD 163
A LD K + EEA L L+ +S G ++V Y LID CK
Sbjct: 603 ALLDGFCKSHRVEEARKL-LDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEM 659
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKS--------------------MISGLCEMG 203
S+ GF T + L++ V KRQ L S MI GLC++G
Sbjct: 660 SEHGFPATLYTYSSLIDRYFKV--KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 717
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA L++ M KG +P+ Y +I G+G +G +E ++ +M S G + V
Sbjct: 718 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 777
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ + L L++MK + P Y V+
Sbjct: 778 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVI 815
>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
Length = 794
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC +G+ EA + + E+ KGL P Y II+ Y + G LE + N+M +
Sbjct: 531 TLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLEN 590
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTI 307
+ D V N +++ H +L + + + + G V TYN+++ + T
Sbjct: 591 YFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTA 650
Query: 308 MSMLQDLNSNDFPLSILELTEVL--------NEEEVSVVKELEDSSVLDEAMKW 353
+ D+ + VL +EE +++ +L++S L E +
Sbjct: 651 LHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSY 704
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 1/99 (1%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A NL+EEMR KG++ S + ++ G R G LE+ + M +G D + N ++
Sbjct: 369 DALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLI 428
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
+Y +++ + + +M SG+ T N++L N C
Sbjct: 429 DAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 467
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 69/154 (44%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+ + C+ AR+ + + R +++S +G +A
Sbjct: 245 VVTYNTLLKAHCRKGMLGEARTLLARMKK-----EGIAPTRATYNTLVSAYARLGWIKQA 299
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-DGTRVDTVCSNMVLS 267
N++E M G EP + Y + G + G +++ ++ ++ME D V N ++
Sbjct: 300 TNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVD 359
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + S + L++M+D G+ S+ T+N V+
Sbjct: 360 ACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVV 393
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 45/223 (20%)
Query: 117 IIAFLDKQGQREEA-ETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
++ L ++GQ EEA L + T L V+ Y LID++CK R + +
Sbjct: 392 VVKGLCREGQLEEALGRLKMMTEEGLAPD----VITYNTLIDAYCK---ARNVAKAFVLM 444
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI----------------------- 212
+++V S + + L +++ LC+ + EAE L+
Sbjct: 445 DEMVRSG--LKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYF 502
Query: 213 ------------EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+EM + L PS + Y +I G +G L + +N++ G D
Sbjct: 503 KENKPEPALYLWDEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDT 562
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+++ +Y +L + + KM ++ V T N+++N
Sbjct: 563 TYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNG 605
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEM-RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ +GLC+ G+ EA L +EM + + P Y ++ + D ++ +M
Sbjct: 321 LAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDK 380
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N+V+ +L + L+ M + G+ V TYN+++++
Sbjct: 381 GVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDA 430
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC+ A+N++EEM K ++P F Y +I G+ R L D +I ME G
Sbjct: 1398 LISGLCKKRMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 1457
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++ Y +S +L + M+ G TY +V++
Sbjct: 1458 ICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISG 1506
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 85/195 (43%), Gaps = 10/195 (5%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV +I +L K+G E+ +L LE + K G V Y ++ID+ CK R
Sbjct: 1215 PTLVTYGSLINWLGKKGDLEKIGSLFLE-MRKRGFSPN--VQIYNSVIDALCK---CRSA 1268
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
L Q+ S + ++I+GLC G +AE+ + E + L P+ Y
Sbjct: 1269 TQAMVILKQMFASGCDPDII--TFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYT 1326
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I+G+ G L ++ +M G D V ++ ++S ++ +KM +
Sbjct: 1327 PLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTER 1386
Query: 289 GIPFSVRTYNSVLNS 303
+ V YN +++
Sbjct: 1387 QVFPDVNIYNVLISG 1401
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+++ +D+ + + N S+ V V+ GLC + E LIE G P
Sbjct: 1130 DARKLYDEMLGKDSGADNYSTCVLVR---------GLCLERRVEEGLKLIEARWGAGCIP 1180
Query: 223 SGFEYKCIIYGYGRLGLLEDMER---IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
Y +I GY R G DM R ++ +ME+ G V +++ G +L ++
Sbjct: 1181 HVVFYNVLIDGYCRRG---DMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIG 1237
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M+ G +V+ YNSV+++ S Q +
Sbjct: 1238 SLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAM 1272
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G +A + E M KG+ P +I GY + G++ + ++ M
Sbjct: 1432 TLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKV 1491
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D V+S Y L+ + WL M +V TY+S++N C T
Sbjct: 1492 GCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKT 1545
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G L+ EM KG P+ Y +I G+ G LE + + +M G
Sbjct: 1188 LIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRG 1247
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N V+ + ++ ++ L++M SG + T+N+++
Sbjct: 1248 FSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITG 1296
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 85/203 (41%), Gaps = 10/203 (4%)
Query: 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159
R+ E F N L +I+ L K G EAE+ L ++ V+ Y +ID +
Sbjct: 54 RMLEAGLFP-NAILYNNLISCLCKAGMLAEAESY----LKRMPQHCAPNVVSYNIIIDGY 108
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
CK R + A L ++ A S++ C+ G +A ++ EM KG
Sbjct: 109 CK---ARNIEKALAFLREMEELGHPP--TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKG 163
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
EP + ++ G R + + + M S G + D V N +++ +L V
Sbjct: 164 CEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAV 223
Query: 280 LWLQKMKDSGIPFSVRTYNSVLN 302
L++MK + + TY ++++
Sbjct: 224 FLLERMKQEDVSPTFVTYTTLID 246
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 3/151 (1%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK Y ++ ++ +I+GLC+ +P EA+ +
Sbjct: 241 YTTLIDHLCKFAR---LQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEM 297
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EMR +G+ P+ Y ++ G L+D + M + +++SS
Sbjct: 298 FQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCK 357
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ L M+D G S++ + +L+
Sbjct: 358 TDQVEEAFKLLSAMRDKGFVPSLKIWEVLLS 388
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
TY L+Q+ + Y + +IS LC+ Q EA L+ MR KG PS ++ +
Sbjct: 333 TYFMLDQVPAPNMFTY------EILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVL 386
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ R G L+D + +M + SN++L + +L++M D+GI
Sbjct: 387 LSRLARAGRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGI 446
Query: 291 PFSVRTYNSVL 301
TY+ ++
Sbjct: 447 VPDKFTYDKLV 457
>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
Length = 795
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
++ E N + +I KQ + EEAE ++ E + G E Y LID
Sbjct: 124 LKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYA--YGALIDG 181
Query: 159 FCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
+CK K G D R L V +++V S+I+G C+ GQ HE E L+ MR
Sbjct: 182 YCKV-GKMG-DAIRVRDEMLKVGLKMNLFV----CNSLINGYCKNGQVHEGERLLMCMRK 235
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS---YGDHNE 274
L+P + Y ++ GY R GL + +QM G V N +L +GD+ +
Sbjct: 236 LDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKD 295
Query: 275 LSRMVLW 281
R LW
Sbjct: 296 ALR--LW 300
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 95/205 (46%), Gaps = 12/205 (5%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC LI F S G+ ++ + +++VN + ++++GLC+ G A
Sbjct: 595 YCTLIHGF----SAAGYVNEAFNLRDEMVNKGLVPNI--TTYNALLNGLCKSGYLDRARR 648
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L +++ +KGL P+ Y +I GY + G + + +M +G + + +++ +
Sbjct: 649 LFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFC 708
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC-----STIMSMLQDLNSNDFPLSILE 325
+++ + L +MK S + ++ T++ ++ C MS L ++ P + +
Sbjct: 709 KQSDVEEAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMMHMACPSAGIT 768
Query: 326 LTEVLNEEEVSVVKELEDSSVLDEA 350
+ + E+S KE+ DS + EA
Sbjct: 769 SHKQMELSELSNAKEMLDSYTISEA 793
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 13/154 (8%)
Query: 152 YCNLIDSFCK-HDSKRG---FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
YC L+D K D R +DD AR + S+Y A +MI+GLC+MG+
Sbjct: 315 YCTLLDGLFKMGDFSRALTLWDDILAR-----GINKSIY----AFNTMINGLCKMGEMDG 365
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A+ + M G +P G Y+ + GY ++G +E+ +I +ME + N ++
Sbjct: 366 AKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEAFKIKEKMEKEEIFPSIEMYNSLIV 425
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++S+++ L +M G+ +V TY +++
Sbjct: 426 GLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALI 459
Score = 45.8 bits (107), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 150 LFYCN-LIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHE 207
LF CN LI+ +CK+ + + +L + S Y +++ G C G +
Sbjct: 207 LFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYC------TLVDGYCRDGLSSK 260
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A N+ ++M KG+EP+ Y ++ G R G +D R+ + M G + V +L
Sbjct: 261 AFNVCDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLD 320
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ SR + + GI S+ +N+++N
Sbjct: 321 GLFKMGDFSRALTLWDDILARGINKSIYAFNTMING 356
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 90/208 (43%), Gaps = 15/208 (7%)
Query: 98 YMRITEESWFQWNP----KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
++R E+ F+ N LV ++ D +G + +L+ +S+ G ++ L
Sbjct: 88 FVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKG-----VLKFMSEKGVMRNKVTLTL- 141
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LI +CK + + + V V A ++I G C++G+ +A + +
Sbjct: 142 -LIKGYCKQCKVEEAEKVLREMEK----EDGVVVDEYAYGALIDGYCKVGKMGDAIRVRD 196
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM GL+ + F +I GY + G + + ER++ M + D+ ++ Y
Sbjct: 197 EMLKVGLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDG 256
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
S+ +M GI +V TYN++L
Sbjct: 257 LSSKAFNVCDQMLRKGIEPTVVTYNTLL 284
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 112/253 (44%), Gaps = 14/253 (5%)
Query: 54 SKAASRLISKFVASSPQFIALNALSH--LLSPDTTHPRLSSLAFPLYMRITEESWFQWNP 111
SK S+LI + ++ N +++ L++ RL AF Y + + F N
Sbjct: 430 SKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDK-AFSAYFEMIGKG-FAPNV 487
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
+ ++I++ L + G+ +EA L+ + + + +LVL + ++ F D ++ D
Sbjct: 488 IICSKIVSSLYRLGRIDEANMLLQKMV------DFDLVLDH-RCLEDFQNADIRK--LDC 538
Query: 172 YARLNQLVNSSSSVYVKRQALKSM-ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ + L S+ + + ++ ++GLC+ G+ ++A + P F Y +
Sbjct: 539 WKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFTYCTL 598
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
I+G+ G + + + ++M + G + N +L+ L R K+ G+
Sbjct: 599 IHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLHLKGL 658
Query: 291 PFSVRTYNSVLNS 303
+V TYN +++
Sbjct: 659 IPNVVTYNILIDG 671
>gi|222617300|gb|EEE53432.1| hypothetical protein OsJ_36514 [Oryza sativa Japonica Group]
Length = 607
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 73/144 (50%), Gaps = 6/144 (4%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I +C+ G A ++ +M KG++P+ Y +I GY +L E+ ++ +M+S
Sbjct: 92 TFIDAICKCGNMELAMQVLLDMEAKGVKPNVVTYSTLIDGYSKLEKYEEALKLCEKMKSM 151
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST-----IM 308
++D VC N +L+ Y + + + +M++ GI TYNS++N I+
Sbjct: 152 RIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGKQGRLDIV 211
Query: 309 SML-QDLNSNDFPLSILELTEVLN 331
S+L QD+ S+L + +++
Sbjct: 212 SILVQDMRKRGVAPSVLTYSTLID 235
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 79/356 (22%), Positives = 139/356 (39%), Gaps = 69/356 (19%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
KQG R + +++++ + K G VL Y LID + K + Y +
Sbjct: 204 KQG-RLDIVSILVQDMRKRGVAPS--VLTYSTLIDIYSKAGMHGDAFNVYLDFKE----- 255
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S + S I L + G A +L+ +M G++P+ Y II +G+ ++ +
Sbjct: 256 SGLKPDVVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMME 315
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHN----------ELSRMVLWLQKMKDSGIPF 292
+ V M G + S G + EL ++ QKM G+
Sbjct: 316 DDSEVGDMGIVGVYGGQIVRVANPVSRGGRSATDVRMRRSQELFFILELFQKMVQQGVRP 375
Query: 293 SVRTYNSVLNSCS--------------------------------------TIMSMLQDL 314
+V T++++LN+CS S+ L
Sbjct: 376 NVVTFSAILNACSRCNSFEDAALLLEQLRLFDNFVYGVAYGLLVGSREVWSQAQSLFNQL 435
Query: 315 NSNDFPLSIL---ELTEVL-----NEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMH 366
D P S LT+VL + VV E + V + W GE LDLH M
Sbjct: 436 GRMDSPTSSAFYNALTDVLWHFGQRRKAQQVVFEGINRRVWENT--W--GEFCLDLHLMS 491
Query: 367 LGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMM 422
G+A ++ W+ +R+ E +P ++++ G GKHS + G S+++ +++ ++
Sbjct: 492 CGAAQAMVHAWLLNVRS-IVFEGRAMPEFLSILTGWGKHSRIAGASTLRRVIEALL 546
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+G + G+ L+++MR +G+ PS Y +I Y + G+ D + +
Sbjct: 197 SLINGYGKQGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYLDFKES 256
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLW----LQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
G + D V + SS+ D + ++ W L M + GI +V TYN+++++
Sbjct: 257 GLKPDVV----LFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKV 312
Query: 310 MLQD 313
M++D
Sbjct: 313 MMED 316
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 106/241 (43%), Gaps = 23/241 (9%)
Query: 120 FLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
F+D K G E A ++L+ +K G + V+ Y LID + K + +++
Sbjct: 93 FIDAICKCGNMELAMQVLLDMEAK-GVKPN--VVTYSTLIDGYSKLEK---YEEALKLCE 146
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ S + + R ++++ + G+ E N+ +EM G+E Y +I GYG+
Sbjct: 147 KM--KSMRIQLDRVCYNTLLAIYVKAGKYAEIANVCDEMEELGIEKDTVTYNSLINGYGK 204
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFS 293
G L+ + +V M G + + ++ Y G H + + L K+SG+
Sbjct: 205 QGRLDIVSILVQDMRKRGVAPSVLTYSTLIDIYSKAGMHGDAFNVYL---DFKESGLKPD 261
Query: 294 VRTYNSVLNSCST------IMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVL 347
V ++S +++ + +S+L D+ +++ +++ S V +DS V
Sbjct: 262 VVLFSSFIDTLAKNGLIEWALSLLNDMTEMGIKPNVVTYNAIIDAFGKSKVMMEDDSEVG 321
Query: 348 D 348
D
Sbjct: 322 D 322
>gi|449438016|ref|XP_004136786.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like [Cucumis sativus]
Length = 707
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 61/114 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI + GQ +AE+L ++ G P Y +I Y + E + + +ME++
Sbjct: 457 SMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 516
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++D++ + ++ ++ N+ S +++ + MK+ GIPF+ + +L++CS +
Sbjct: 517 NIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL 570
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+ ++I+ GQ A N++E+M + PS + +I G G + R+ +
Sbjct: 66 ETYNALINAHGRAGQWRWATNIMEDMLRAAIPPSRSTFNNLINACGSCGNWREALRVCKK 125
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M +G D V N+VLS+Y + S+ + + + MK + I T N V++
Sbjct: 126 MTDNGVGPDLVTHNIVLSAYKSGAQYSKALSYFELMKGTNIRPDTTTLNIVIH 178
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++IS G EA ++ +EM+ G P Y +I +GR + + M+ +
Sbjct: 247 ALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRN 306
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + V N ++ +YG + L + V L++M+ GI +V + ++L +C
Sbjct: 307 KCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAACG 358
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
L +I L ++ Q +A + MR K E P + II+ Y G +ED + + +
Sbjct: 173 LNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFST 232
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M ++G + + V N ++S+Y H +MK SG V +Y S++++
Sbjct: 233 MLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIST 286
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 78/188 (41%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD-DTYARL 175
II +GQ E+ + + T+ G + ++ Y LI ++ H G D + ++
Sbjct: 213 IIHLYSVRGQIEDCKA-VFSTMLAEGIKPN--IVSYNALISAYASH----GMDKEAFSVF 265
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ S V + S+IS QP A + + M+ +P+ Y ++ YG
Sbjct: 266 DEMKRSGFCPDV--VSYTSLISTFGRSQQPARAREVFDMMKRNKCKPNLVSYNALMDAYG 323
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G L I+ +ME DG + V +L++ G + + L + GI +
Sbjct: 324 SNGYLPQAVDILREMEQDGIHPNVVSICTLLAACGRFGQKVNIDSVLSAAELRGIHLNTI 383
Query: 296 TYNSVLNS 303
NS + S
Sbjct: 384 ACNSAIGS 391
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDDTY 172
+I L K G+ EA L + +K + + V+ Y LI FCK + ++ FDD
Sbjct: 328 LIDGLCKTGRAPEANRLFGDMKAKFCNPD---VITYSCLIGGFCKLERIDMARTLFDDM- 383
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
L Q V + +++ G C G +AE L+EEM P + Y ++
Sbjct: 384 --LKQAVLPDVVTF------STLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVD 435
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ ++G + + R++ +M G + + V ++ ++ + + L++M +G+
Sbjct: 436 GFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQP 495
Query: 293 SVRTYNSVLNS-CST 306
+V TY S++ C T
Sbjct: 496 NVITYRSLIGGFCGT 510
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 112/241 (46%), Gaps = 18/241 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C++ + H A L++EM+ GL P+ Y +I+G+ R ++ ++ QM +G
Sbjct: 48 LINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENG 107
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
+ V N +LS + + L +M++ G+ +Y++++ C T +
Sbjct: 108 CMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMAL 167
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLD-----LH 363
+ +D ++ D P ++ + ++ + L+++ L E M+ +S E + +
Sbjct: 168 KVFEDNSNGDCPPDVVAYSTLI--AGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMD 225
Query: 364 GMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMV 423
G+ G Q ++ M +R N +VI +++ G K VR V K+M+V
Sbjct: 226 GLCKGDRLQEAQQVLETMEDR-NCTPNVITYS-SLIDGLCKTGQVRDAQEV---FKRMIV 280
Query: 424 R 424
R
Sbjct: 281 R 281
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 9/168 (5%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G ++AE L+ E ++ S + V Y +L+D FCK R+ + +
Sbjct: 406 GLVDDAERLLEEMVASDCSPD---VYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNV 462
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V ++I C G+P A L+EEM G++P+ Y+ +I G+ G LE+
Sbjct: 463 V-----TYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEAR 517
Query: 245 RIVNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+++ ++E D + D +++ +S + L+ +K SG P
Sbjct: 518 KMLERLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTP 565
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 103/269 (38%), Gaps = 39/269 (14%)
Query: 76 ALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDK--QGQREEAETL 133
A S L++ RL A L+ ++ E S P +V A +D +G R +
Sbjct: 184 AYSTLIAGLCKTGRLDE-ACKLFEKMRENSC---EPDVVT-FTALMDGLCKGDRLQEAQQ 238
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL------------NQLVNS 181
+LET+ V+ Y +LID CK R + + R+ N L++
Sbjct: 239 VLETMEDRNCTPN--VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 296
Query: 182 SSSVYVKRQAL------------------KSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
AL ++I GLC+ G+ EA L +M+ K P
Sbjct: 297 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPD 356
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y C+I G+ +L ++ + + M D V + ++ Y + + L+
Sbjct: 357 VITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 416
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+M S V TY S+++ + M++
Sbjct: 417 EMVASDCSPDVYTYTSLVDGFCKVGRMVE 445
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 6/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI CK D+ ++ +S V +++ GLC+ + EA
Sbjct: 182 VVAYSTLIAGLCKTGR---LDEACKLFEKMRENSCEPDV--VTFTALMDGLCKGDRLQEA 236
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++E M + P+ Y +I G + G + D + + +M G + V N ++
Sbjct: 237 QQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHG 296
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ N + +L +++M +G + TYN++++ C T
Sbjct: 297 FCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKT 335
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 11/185 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
YC+LID+ K + + L + SSS+ + MI L + G+ +A NL
Sbjct: 444 YCSLIDALGKAKRYDLACELFQELKENCGSSSA-----RVYAVMIKHLGKAGRLDDAINL 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM G P+ + Y ++ G R +L++ + +M+ G D N++L+
Sbjct: 499 FDEMSKLGCTPNVYAYNALMSGLARACMLDEALTTMRKMQEHGCLPDINSYNIILNGLAK 558
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILE 325
R + L MK+S I +YN+VL++ S +++++N+ F ++
Sbjct: 559 TGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEMNALGFEYDLIT 618
Query: 326 LTEVL 330
+ +L
Sbjct: 619 YSSIL 623
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 87/188 (46%), Gaps = 9/188 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L +GQ E+ L E +S G + V Y LI +FCK G D+ RL
Sbjct: 200 MIIMLIHEGQYEKVHELYNE-MSNEGHCHPDTVT-YSALISAFCK----LGRQDSAIRLL 253
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N++ + K + +IS ++ H A +L EEMR P F Y +I G G
Sbjct: 254 NEMKENGMQPTAKIYTM--IISLFFKLDNVHGALSLFEEMRYMYCRPDVFTYTELIRGLG 311
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G +++ ++M+ + + DTV N +++ G L + ++M S +V
Sbjct: 312 KAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVV 371
Query: 296 TYNSVLNS 303
TYN+++ +
Sbjct: 372 TYNTIIKA 379
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 14/208 (6%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + + A L E GS + Y +I KH
Sbjct: 433 DEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARV---YAVMI----KH 485
Query: 163 DSKRG-FDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
K G DD +++ + + +VY A +++SGL EA + +M+ G
Sbjct: 486 LGKAGRLDDAINLFDEMSKLGCTPNVY----AYNALMSGLARACMLDEALTTMRKMQEHG 541
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y I+ G + G ++ M++ + D V N VLS+
Sbjct: 542 CLPDINSYNIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+++M G + + TY+S+L + +
Sbjct: 602 ELMKEMNALGFEYDLITYSSILEAIGKV 629
>gi|224576651|gb|ACN56999.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDG 101
>gi|302823876|ref|XP_002993586.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
gi|300138598|gb|EFJ05361.1| hypothetical protein SELMODRAFT_137265 [Selaginella moellendorffii]
Length = 451
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 94/195 (48%), Gaps = 15/195 (7%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD---DT 171
A+II + KQGQ A + I L +L SR VL + CK + R D D
Sbjct: 102 AKIIDTMGKQGQLRLA-SWIFSQL-QLSSRTTP-VLNAIIMAHLRCK-NVARALDSALDH 157
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLC-EMGQPHEAENL-IEEMRVKGLEPSGFEYKC 229
+ + V+S S+ A +M++ C + G +AE L +E +R + L+P + +
Sbjct: 158 FGHMKTSVHSCPSL-----ATYNMLTRACAQAGLTDKAEALFLELLRREDLKPDAYTFNG 212
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-S 288
I+ Y + GL DME + +M G R D V N+++ +YG + +M + + + S
Sbjct: 213 IMDAYAKKGLYRDMEYKLKEMSEHGVRPDLVTFNVLIDAYGRAGDFVKMERTYKSLVNLS 272
Query: 289 GIPFSVRTYNSVLNS 303
G S T+NS+L S
Sbjct: 273 GCKPSATTFNSMLAS 287
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 42/87 (48%)
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+ G +PS + ++ YG+ L ME+++ +M+ G D N ++SSYG EL
Sbjct: 271 LSGCKPSATTFNSMLASYGQSRELGKMEQVLVRMDMAGLGPDLTTFNTLMSSYGRAGELD 330
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M KM S + V T + +L +
Sbjct: 331 TMRKCFDKMVRSPVKPQVSTLDVLLRA 357
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQL--VNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y ++D CK DT + LN L + S + ++I LC+ G+ +A+
Sbjct: 222 YGTIVDGMCKKG------DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQ 275
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
NL EM+ KG+ P F Y +I G+ G D E+++ +M D V N +++++
Sbjct: 276 NLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAF 335
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M GI + TYNS+++
Sbjct: 336 VKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDG 369
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 107/258 (41%), Gaps = 24/258 (9%)
Query: 53 DSKAASRLISKFVASS---PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
D+ +A L+ K S P + +A+ L D H +L + + F +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +V G+ +AE L+ E L + S + V+ Y LI++F K ++
Sbjct: 294 NSMIVG-----FCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAA 345
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+D+ R + SMI G C+ + AE++ M KG P F
Sbjct: 346 ELYDEMLPR---------GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVF 396
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +I GY ++D ++++M G +TV N ++ + +L+ + Q+M
Sbjct: 397 TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQM 456
Query: 286 KDSGIPFSVRTYNSVLNS 303
SG+ + T N++L+
Sbjct: 457 ISSGVCPDIVTCNTLLDG 474
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 87/198 (43%), Gaps = 20/198 (10%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A I AF+ K+G+ EA L E L + G + Y ++ID FCK D +D +
Sbjct: 330 ALINAFV-KEGKFFEAAELYDEMLPR-GIIPNTIT--YNSMIDGFCKQDRLDAAEDMF-Y 384
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L S V+ ++I G C + + L+ EM +GL + Y +I+G+
Sbjct: 385 LMATKGCSPDVF----TFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS---RMVLWLQKMK---DS 288
+G L + QM S G D V N +L D+ +L M +QK K D+
Sbjct: 441 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 500
Query: 289 GIPFS-----VRTYNSVL 301
PF+ V TYN ++
Sbjct: 501 SHPFNGVEPDVLTYNILI 518
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 15/140 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVN-----SSSSVYVKRQALKSMISGLCEMGQPH 206
Y ++ID CK +RL++ S S ++I+G C+ G+
Sbjct: 549 YSSMIDGLCKQ----------SRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVD 598
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+ L EM +G+ Y +IYG+ ++G + I +M S G DT+ +L
Sbjct: 599 DGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNML 658
Query: 267 SSYGDHNELSRMVLWLQKMK 286
+ + EL R V L+ ++
Sbjct: 659 TGFWSKEELERAVAMLEDLQ 678
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 20/126 (15%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDME 244
++++GLC G+ EA L++ M GL+P+ Y I+ G + G LL ME
Sbjct: 187 FTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKME 246
Query: 245 ---RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS-V 300
I+ + +D++C + G H++ + +M++ GI + TYNS +
Sbjct: 247 EVSHIIPNVVIYSAIIDSLCKD------GRHSDAQNL---FTEMQEKGIFPDLFTYNSMI 297
Query: 301 LNSCST 306
+ CS+
Sbjct: 298 VGFCSS 303
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 43/97 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI GLC+ + EA + M K P+ + +I GY + G ++D + +M
Sbjct: 551 SMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRR 610
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G D + ++ + ++ + Q+M SG+
Sbjct: 611 GIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 647
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 84/169 (49%), Gaps = 9/169 (5%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD-DTYARLNQLVNSSSSVYVKRQAL 192
I++ + + G R ++ Y LID FC RG D DT + + ++ + + + R
Sbjct: 402 IVDGMIRRGLRPDKVT--YTTLIDGFC-----RGGDVDTALEIRKEMDQNG-IELDRVGF 453
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++I G+C+ G+ +AE + EM G++P Y ++ + + G + +++ +M+S
Sbjct: 454 SALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS 513
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
DG + V N++L+ ++ + L M + G+ TYN++L
Sbjct: 514 DGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLL 562
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 149 VLFYCNLIDSFCKHD---SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
++ Y L++ FCK+ + R D R + + ++I G C G
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIR--------RGLRPDKVTYTTLIDGFCRGGDV 431
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A + +EM G+E + +I G + G + D ER + +M G + D V M+
Sbjct: 432 DTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMM 491
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ ++ + L++M+ G +V TYN +LN + M
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQM 536
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 92/210 (43%), Gaps = 15/210 (7%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
YM I + + F N + ++ K+G +A+ + E + R V+ + LI
Sbjct: 227 FYMEILD-AGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKR---SLRPTVVSFNTLI 282
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSS---VYVKRQALKSMISGLCEMGQPHEAENLIE 213
+ +CK G D RL + S + V+ ++I+ LC+ + A L
Sbjct: 283 NGYCK----VGNLDVGFRLKHHMEKSRTRPDVF----TYSALINALCKENKMDGAHRLFY 334
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EM +GL P+ + +I+G+ R G ++ M+ +M S G + D V N +++ + +
Sbjct: 335 EMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNG 394
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + M G+ TY ++++
Sbjct: 395 DLVAARNIVDGMIRRGLRPDKVTYTTLIDG 424
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ C+ G L++EM+ G P+ Y ++ G +LG +++ + +++ M + G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVG 550
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D + N +L + H S+ ++ + GI + +Y S++N
Sbjct: 551 VVPDDITYNTLLEGHHRHANASK---HYKQKPEIGIVADLASYKSLVN 595
>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g19890-like [Cucumis sativus]
Length = 728
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-VNQMES 252
SMISGLC+ G +A L+EEM G +P+ + + +I+G + G E R+ + + S
Sbjct: 319 SMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRS 378
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + + ++S Y +LSR + ++MK+ G+ + TY ++++
Sbjct: 379 DNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDG 429
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 55/103 (53%)
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
EM A N+ +EM +G+ P YK II GY R G + + +R + +M G VD
Sbjct: 221 EMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNA 280
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++++++ + + ++R V + K+ G+ ++ Y+S+++
Sbjct: 281 TLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISG 323
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 71 FIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQRE 128
F+ NA L+ L + A + ++T+ +P L+ + +I+ L K+G +
Sbjct: 275 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTK---MGLSPNLINYSSMISGLCKRGSVK 331
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A L LE + K G + V + +LI CK +G+ + RL + S +
Sbjct: 332 QAFEL-LEEMVKNGWKPN--VYTHTSLIHGLCK----KGWTERAFRLFLKLIRSDNYKPN 384
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+MISG C+ + AE L E M+ +GL P+ Y +I G+ + G ++
Sbjct: 385 VHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELME 444
Query: 249 QMESDGTRVDTVCSNMVL 266
M ++G +T N ++
Sbjct: 445 LMSNEGFFPNTCTYNSIV 462
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 26/223 (11%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF ++ + + + P LV + +I L + Q +EA L + + K R L
Sbjct: 211 AFQVFDEMRKMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEK--DRIVPDQLT 268
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--------LKSMISGLCEMG 203
Y LI FC RL Q+ + S R+ ++I+G C+ G
Sbjct: 269 YNLLIGGFC-------------RLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKG 315
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A + EEM G++P Y ++ R G +++ +V +M G + D V N
Sbjct: 316 EVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYN 375
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
++L ++ V L+K+ G+ +V +Y V+N CS
Sbjct: 376 LLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCS 418
>gi|255685752|gb|ACU28365.1| At1g03560-like protein [Arabidopsis lyrata subsp. petraea]
Length = 178
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L ++++ V ++
Sbjct: 8 VFENMIRKGSKPN--VAIYTVLIDGYAKXGS---VEDAIRLLXRMIDEGFXPDVVTYSV- 61
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 62 -VVNGLCKNGRVEEALDYFXTCRFNGLAINSMFYSSLIDGLGKXGRVDEAERLFEEMSEK 120
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H +++ ++M ++ G +V TY +++
Sbjct: 121 GCTRDSYCYNALIDAFTKHGKVNEAXALFKRMEEEEGCDQTVYTYTILISG 171
>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g74580
gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 763
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y +LID C H+ + R L N + +K + ++I GL G EA
Sbjct: 359 YRSLIDGLC-HEGETN------RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L EM KGL P + ++ G ++G + D + +V M S G D N+++ Y
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
++ + L M D+G+ V TYNS+LN C T
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 81/168 (48%), Gaps = 6/168 (3%)
Query: 135 LETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
L L+ + S+ E+ V+ YC ++ F + + K + Y +++ S S+ +
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA---EGYELFGKMLASGVSLCL--STFN 220
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ LC+ G E E L++++ +G+ P+ F Y I G + G L+ R+V +
Sbjct: 221 KLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQ 280
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + D + N ++ +++ ++L KM + G+ TYN+++
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE + +M +GLEP + Y +I GY + G+++ ERIV +
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D ++ E +R + + GI +V YN+++ S
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLS 402
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 177 QLVN--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
QL N S + + Q +++GLC+MG +A+ L++ M KG P F + +I+GY
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+E+ I++ M +G D N +L+ ++ ++ + M + G ++
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNL 531
Query: 295 RTYNSVLNS 303
T+N +L S
Sbjct: 532 FTFNILLES 540
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y NLI CK+ F + L ++VN + ++I+G C+ G A
Sbjct: 286 VITYNNLIYGLCKNSK---FQEAEVYLGKMVNEG--LEPDSYTYNTLIAGYCKGGMVQLA 340
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E ++ + G P F Y+ +I G G + N+ G + + + N ++
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M + G+ V+T+N ++N
Sbjct: 401 LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNG 435
>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
Length = 625
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ EA + + + +G +P Y +++GY G L +M +++ M G ++
Sbjct: 323 LCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLG 382
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IMSMLQ 312
NM++ +Y HN++ +L M+ G+ + Y +VL+ T +S
Sbjct: 383 HHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFN 442
Query: 313 DLNSNDFPLSILELTEVLN 331
L S +I+ T +++
Sbjct: 443 SLKSEGLAPNIVVFTTLIH 461
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++ LC+ G+ EA+NL + M G+EP+ Y +I GY G +++ +++ M
Sbjct: 491 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 550
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G + V N +++ Y + + + L++M G+ + TY +L
Sbjct: 551 FNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQG 602
>gi|255558584|ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540536|gb|EEF42103.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 439
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 56/109 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++++EM + +P+ F Y +I+ YG +ED ME +G
Sbjct: 200 MVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNG 259
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D N ++ ++ N+ + L +M G+ + RT N +LN+
Sbjct: 260 VKADVAAYNALIGAFCKVNKFKNVYRVLNEMDYKGMQPNSRTLNIILNN 308
>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 624
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ EA + + + +G +P Y +++GY G L +M +++ M G ++
Sbjct: 322 LCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLG 381
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IMSMLQ 312
NM++ +Y HN++ +L M+ G+ + Y +VL+ T +S
Sbjct: 382 HHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFN 441
Query: 313 DLNSNDFPLSILELTEVLN 331
L S +I+ T +++
Sbjct: 442 SLKSEGLAPNIVVFTTLIH 460
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++ LC+ G+ EA+NL + M G+EP+ Y +I GY G +++ +++ M
Sbjct: 490 FNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMV 549
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+G + V N +++ Y + + + L++M G+ + TY +L
Sbjct: 550 FNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQG 601
Score = 41.6 bits (96), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 40/210 (19%), Positives = 88/210 (41%), Gaps = 6/210 (2%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LAF R+ + + +P L + ++ L + + +A ++L + +LG + + Y
Sbjct: 117 LAFATVGRVIT-TGLRMSPILFSPLLKGLCDRRRTSDAMDIVLRRMPELGCKPD--LFSY 173
Query: 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
L+ C + + D L+ + + + A ++I+GL GQ +A +L
Sbjct: 174 TILLKGLCDDKTSQQALDL---LHIMADHKGRCPLDVVAYTTVINGLLREGQLDKAYSLF 230
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+ M +G P Y II + ++ ++ +M +G D + ++ Y
Sbjct: 231 DAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSS 290
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + +KM G+ V TY ++++
Sbjct: 291 GKPKEAIGIFKKMCRHGVEPDVVTYTALMD 320
>gi|224138172|ref|XP_002326536.1| predicted protein [Populus trichocarpa]
gi|222833858|gb|EEE72335.1| predicted protein [Populus trichocarpa]
Length = 697
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 87/184 (47%), Gaps = 9/184 (4%)
Query: 122 DKQGQREEAE--TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179
++ GQ + E +LILE + + G E V+ Y I C+ S +D + ++ L
Sbjct: 198 ERHGQNIDMEQASLILEEMEEKG--ENPTVVTYGVYIHGLCRVGS---IEDAWNKIQDLR 252
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239
+S+ + + ++I G C+ G+P EA L+EEM+ +G+ P + Y ++ + G
Sbjct: 253 SSNQPLNI--YCYNALIQGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCTEGD 310
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+E ++ +ME + VC VL ++ + + ++ G + +Y++
Sbjct: 311 IESGMNLIQEMEHCNKKPPLVCCTSVLMGLRTKGLVNDCLNFFHELSAKGYKHDLISYST 370
Query: 300 VLNS 303
+++
Sbjct: 371 LIHG 374
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G + A NL+ EMR GL P Y +I Y R G L++ + M D
Sbjct: 370 TLIHGFLKGHNVKSANNLVHEMRKNGLVPDYIIYISLIREYCRKGCLKEALKNFYTMLQD 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + D + N ++ Y + ++++ +MKD I + TY+ ++N
Sbjct: 430 GLQPDIITCNHIVDQYCSRGQFEEALIYINQMKDQNILPNSYTYSVIIN 478
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A ++EEM KG P+ Y I+G R+G +ED + + S ++ C N ++
Sbjct: 208 QASLILEEMEEKGENPTVVTYGVYIHGLCRVGSIEDAWNKIQDLRSSNQPLNIYCYNALI 267
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+ + L++MKD GI + +Y+ ++N+ T
Sbjct: 268 QGFCQKGRPDEALKLLEEMKDEGISPDIYSYSILVNAFCT 307
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 19/143 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T++++ SK G + L LF + +ID +C+ + + Y ++ +
Sbjct: 545 TVLVDMFSKRGKMSKALNLFKEMAEEGLSRDEFAFTAIIDGYCRVGNVKRAWSMYKKMKR 604
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
++V + ++ G C++ + A LI++M+ + P Y +I GY R+
Sbjct: 605 -----NNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDMKRNSVTPDVKTYTALIAGYQRI 659
Query: 238 GLLEDMERIVNQMESDGTRVDTV 260
++ + ++M+ GT D +
Sbjct: 660 ENIDRAYEVFDEMKKKGTLPDHI 682
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/99 (20%), Positives = 45/99 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I G C +G A ++ ++M+ + P+ Y C++ G+ +L L+ +++ M
Sbjct: 578 AFTAIIDGYCRVGNVKRAWSMYKKMKRNNVTPNVKTYTCLVDGFCKLKRLDMATMLIDDM 637
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+ + D +++ Y + R +MK G
Sbjct: 638 KRNSVTPDVKTYTALIAGYQRIENIDRAYEVFDEMKKKG 676
>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats [Arabidopsis thaliana]
gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 632
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 110 NPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 325 NPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR-- 378
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 379 -LDEAKHMFELMI--SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 435
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I+G+ + ++ + + QM S G + + N++L + +L++ ++ + ++
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 495
Query: 287 DSGIPFSVRTYN 298
S + + TYN
Sbjct: 496 RSTMEPDIYTYN 507
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C + +A L+++M G +P F + +I+G + +V+QM
Sbjct: 156 LSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMV 215
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
G + D V V++ ++ + L+KM+ I V YN++++ M
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
Query: 312 QDLN 315
LN
Sbjct: 276 DALN 279
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + L + +KG+ P+ Y +I G+ R G E+ + ++ +M+ DG
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ N ++ + GD + ++ ++M+ G T V N
Sbjct: 569 PLPNSGTYNTLIRARLRDGDREASAELI---KEMRSCGFAGDASTIGLVTN 616
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ +A NL EM KG+ P F Y +I G D R+++ M
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ +L +M I + TY+S++N
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MISG C G EA++L+++M+ G P+ Y +I R G E ++ +M
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
Query: 251 ESDGTRVDT 259
S G D
Sbjct: 600 RSCGFAGDA 608
>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 1219
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP V +I L K G+ E+A E +I E LS + Y +LI S C D
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN-------IVYNSLIHSLCIFD 458
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 459 K---WDKAKELILEMLDRG--ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ +++ M S G + D V N +++ Y + + ++ +
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M+ SG+ + TYN +L
Sbjct: 574 EMESSGVSPDIITYNIIL 591
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y ++ GY G L +M +++ M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + ++++ +Y ++ + +L KM+ G+ TY +V+
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ F K D Y +++++ + S+I+ LC+ +A
Sbjct: 199 VVSYTTVINGFFKEGD---LDKAYGTYHEMLDRG--ILPNVVTYSSIIAALCKAQAMDKA 253
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ M G+ P+ Y I++GY G ++ + +M SDG D V N ++
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ E+E L + + ++G + ++ Y LID +C +L+ S
Sbjct: 491 KEGRVIESEKL-FDLMVRIGVKPD--IITYSTLIDGYC-------LAGKMDEATKLLASM 540
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SV +K + ++I+G C++ + +A L EM G+ P Y I+ G +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRT 600
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ + + GT+++ N++L +N + Q + + + RT+N +
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660
Query: 301 LNS 303
+ +
Sbjct: 661 IGA 663
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ Y +L+D CK+ ++++ FD R + + +++ G G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKR---------GLKPEITTYGTLLQGYATKGA 354
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
E L++ M G+ P+ + + +I Y + G ++ + ++M G DTV
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V+ + + + ++M D + YNS+++S
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++ GLC+ + EA L++ M G + P Y +I G+ + G L+ ++M
Sbjct: 168 LLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + V + ++++ + + + L M +G+ + RTYNS+++ CS+
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS+++ S+I G+C EA+ + EEMR +GL P+ F Y +I GY +LG ++
Sbjct: 655 SSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQMD 714
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+E I+ +M S+ + + + +++ Y L +M +GI TY
Sbjct: 715 QIESILQEMTSNCIQPNKITYTIMIDGYCKMGNTKEATKLLNEMIANGISPDTVTY 770
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLCE G E + +EM +GL G Y +I+G + G +E+ ++ +M
Sbjct: 492 ALLYGLCERGNMEEVFPVCKEMVERGLVLDGISYNTLIFGCCKSGKIEEAFKLKEKMMKQ 551
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G + DT N ++ D ++ + L + KD G+ ++ TY
Sbjct: 552 GFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTY 595
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 74/155 (47%), Gaps = 8/155 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +EA L L+ + + G V+ Y NLID CK S R + + + N
Sbjct: 253 KGGKIDEAVGLFLK-MGEGGVLPN--VVTYNNLIDGLCK--SGRLEEALMFKGRMVENKV 307
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ V L ++GL + + EA +++ EM KG P+ F + +I GY R G ++D
Sbjct: 308 NPSLVTYGIL---VNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDD 364
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
R+ + M G + + V N +L + N++ +
Sbjct: 365 ALRVRDDMTLKGLKPNAVTHNTLLQGFCRTNQMEQ 399
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 53/108 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G+ EA L E+M +G +P + Y ++ G G ++D+ R++++ +
Sbjct: 527 TLIFGCCKSGKIEEAFKLKEKMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDH 586
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + ++L Y + + + V K+ + + S YN ++
Sbjct: 587 GVVPNIYTYALMLEGYCNADRIDNAVSLFNKLVYNKVELSYVVYNILI 634
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLV-NSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +++ +C D D+ + N+LV N YV L I+ + G EA
Sbjct: 595 YALMLEGYCNADR---IDNAVSLFNKLVYNKVELSYVVYNIL---IAAHSKAGNFTEAFK 648
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L + MR + P+ F Y II+G L+E+ + I +M ++G + C ++ Y
Sbjct: 649 LRDAMRSSNIHPTIFTYSSIIHGMCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYC 708
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ ++ LQ+M + I + TY +++
Sbjct: 709 KLGQMDQIESILQEMTSNCIQPNKITYTIMIDG 741
>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 606
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 7/148 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID F K D+ G + L+Q V + Y S+I+GLC G+ +EA + +
Sbjct: 302 LIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITY------NSLINGLCNGGKINEAIGMRD 355
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M G++P+ Y +I G+ + G++++ + + ++ GTR T NM++ +Y
Sbjct: 356 KMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLG 415
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ ++M+ GI V TYN ++
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQME 251
+I+ LC+ G+ ++A +++E+M+V G P+ Y +I GY +LG M + ++ +M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + N+++ + + L + ++M D + +V TYNS++N
Sbjct: 289 ENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340
Score = 44.7 bits (104), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD- 253
++ G C G+ +A L++EM GL+P Y ++ GY + G L+ + QME +
Sbjct: 476 LMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKER 535
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R++ N++L Y +L + L +M + G+ + TY V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LI+ C ++ +++V S+ V S+I+G C+ G EA
Sbjct: 331 VITYNSLINGLCNGGK---INEAIGMRDKMV--SAGVQPNLITYHSLINGFCKNGMMKEA 385
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ + ++ +G P+ Y +I Y +LG ++D + +ME +G D N +++
Sbjct: 386 LDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445
Query: 269 YGDHNELSRMVLWLQKMKDSGIP 291
+ + ++ + G+P
Sbjct: 446 LCRNGNIEAAKKLFDQLTNKGLP 468
>gi|226494779|ref|NP_001147294.1| transferase, transferring glycosyl groups [Zea mays]
gi|195609598|gb|ACG26629.1| transferase, transferring glycosyl groups [Zea mays]
gi|414866930|tpg|DAA45487.1| TPA: hypothetical protein ZEAMMB73_715808 [Zea mays]
Length = 546
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 59/110 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLCEM A+ + +EM +G+ P+ + Y ++ Y R+G L+ ++ ++M
Sbjct: 284 TVIHGLCEMRLIGVAQQMWDEMVGRGIAPNEYAYCSLVTYYCRVGDLDKARKVYDEMLEK 343
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + TV N+++ + H + + ++M GI V TY++++N
Sbjct: 344 GFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGIKHDVITYDTLING 393
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS + +I +CE GQ H A +LI+ MR KGLEP + II G+ ++ L +
Sbjct: 412 SSGLEPTSSTFGRLICAMCENGQVHAAVDLIKSMRTKGLEPPVWTNDHIISGFCKINLSD 471
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + M D R + ++ S L ++L L M G F + T+ +
Sbjct: 472 EGMAWLAGMLKDNIRPQRQTFDYLVESLSTSGRLDDVLLVLNIMFKVG--FEIGTFACTV 529
Query: 302 ---NSCSTIMSML 311
C++ +S+L
Sbjct: 530 LAEKPCTSNVSLL 542
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/160 (18%), Positives = 72/160 (45%), Gaps = 13/160 (8%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
YC+L+ +C+ +++ +D+ + + S ++ +K G C G+ ++
Sbjct: 317 YCSLVTYYCRVGDLDKARKVYDEMLEKGFKQTTVSCNILIK---------GFCVHGRVYD 367
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A + EEM +KG++ Y +I G + G L+ R+ + S G + ++
Sbjct: 368 ALEVFEEMSIKGIKHDVITYDTLINGLFKAGKLDLAMRMYEWLLSSGLEPTSSTFGRLIC 427
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ ++ ++ V ++ M+ G+ V T + +++ I
Sbjct: 428 AMCENGQVHAAVDLIKSMRTKGLEPPVWTNDHIISGFCKI 467
>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
Length = 770
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 91/199 (45%), Gaps = 10/199 (5%)
Query: 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLFYCNLIDSFCKHDS 164
+ + N ++ I L K+G+ EEA + L K LG + LI C+ ++
Sbjct: 422 FLKPNDAVMTACIQELCKRGKHEEAAEIWFLVLGKGLGVN----IATSNALIHGLCQGNN 477
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ + L +V+S V R MI C+ + EA L ++M +G +P
Sbjct: 478 MK---EATKVLKAMVDSG--VEFDRITYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDL 532
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
F + + Y LG +ED+ +++QM+S+G + D V ++ Y ++ + +L +
Sbjct: 533 FTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIE 592
Query: 285 MKDSGIPFSVRTYNSVLNS 303
+ +G+ + YN+++
Sbjct: 593 LIKNGLRPNAVIYNALIGG 611
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+ + C +G+ + +L+++M+ +GL+P Y II GY + + + + ++
Sbjct: 535 FNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELI 594
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+G R + V N ++ YG + +S + L MK +GI + TYNS++
Sbjct: 595 KNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQPTPITYNSLM 644
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C++G+ EA +EM + + P+ Y ++Y Y + G E+ ++ ++M S G
Sbjct: 678 IIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSG 737
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMV 279
DTV N ++S + + L ++V
Sbjct: 738 IVPDTVSYNTLISGCCEVDSLDKIV 762
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 92/233 (39%), Gaps = 33/233 (14%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI LC G+ A ++ E+ G++P+ Y ++ R G +E+ ++ +M
Sbjct: 222 MIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMVEGR 281
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIM 308
R V ++++ + LQ+M+ GI + YN ++ CS +
Sbjct: 282 LRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCSEAL 341
Query: 309 SMLQDLNSNDFPLSILELT----EVLNEEEVSVVKELED----------SSVLDEAMKWD 354
+ ++ S +++ + E E+ +++ D S+ + + W
Sbjct: 342 RLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDEMLLAGMTVHCSLFNSVVAWH 401
Query: 355 -SGETKLDLHGMHLGSAYFIILQWMDEMRNRF-NNEKHVIPAEITVVCGSGKH 405
G +LD ++L+ + EM RF V+ A I +C GKH
Sbjct: 402 LRGTGRLD-----------VVLRLIREMVARFLKPNDAVMTACIQELCKRGKH 443
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/154 (16%), Positives = 67/154 (43%), Gaps = 7/154 (4%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
++ Y +ID +CK D + + + ++ +Y ++I G G +
Sbjct: 567 IVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIY------NALIGGYGRNGSISD 620
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +++ M+ G++P+ Y ++Y GL+E+ + I Q + + +++
Sbjct: 621 AIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQ 680
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++ V++ ++M I + TY +++
Sbjct: 681 GFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLM 714
>gi|224100125|ref|XP_002334407.1| predicted protein [Populus trichocarpa]
gi|222872045|gb|EEF09176.1| predicted protein [Populus trichocarpa]
Length = 513
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I LC G+ +A + EE++V G EP F Y+ +I G + +ED +I ++M+ +
Sbjct: 261 SLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDSTKIFSEMQYN 320
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G DTV N +L ++ +KM G+ S TYN +++
Sbjct: 321 GFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDG 370
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 69/340 (20%), Positives = 127/340 (37%), Gaps = 50/340 (14%)
Query: 16 RCCRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALN 75
R R R +++ + A+ ++ ++ + L + +D A L + V +P
Sbjct: 134 RQSRTRVKKMNKLALRKAKDWRERVKYFTDRILGLKQDQFVADVLDDRKVQMTPTDFCFV 193
Query: 76 ALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135
S + ++ H AF +Y + W+ N ++++ I+A L K Q E L +
Sbjct: 194 VKS--VGQESWH-----RAFEVYEWLNLRHWYSPNARMLSTILAVLGKANQ----EPLAV 242
Query: 136 ETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSS 183
E ++ V Y ++ + + +RG + N L+N+
Sbjct: 243 EVFTRAEPSVENTVKVYNAMMGVYARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARL 302
Query: 184 SV-------------YVKRQALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
V+R L+ ++IS EA N+ ++M EP
Sbjct: 303 KAGEMTPNLAIELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPD 362
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
+ Y +I YGR GL E++ N +ES G D V N L ++ + ++ +
Sbjct: 363 LWTYNAMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICE 422
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323
+M G TYN T++ M ND L +
Sbjct: 423 EMVKIGFGKDEMTYN-------TMIHMYGKQGQNDLALQL 455
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 72/146 (49%), Gaps = 12/146 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C +P E L++EMR GLEP YK ++ +G+ L+E E + +++S G
Sbjct: 996 LIVMYCRDHRPKEGLVLMDEMRTVGLEPKLDTYKSLVASFGKQQLVEQAEELFEELQSTG 1055
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST----- 306
++D ++++ Y G H++ R+ MKD G+ ++ T + ++ S +
Sbjct: 1056 CKLDRSFYHIMMKIYRNSGSHSKAQRL---FSMMKDEGVEPTIATMHLLMVSYGSSGQPQ 1112
Query: 307 -IMSMLQDLNSNDFPLSILELTEVLN 331
+L +L D LS L + V++
Sbjct: 1113 EAEKVLSNLKETDANLSTLPYSSVID 1138
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS G +AE L ++ +G P Y +Y + R G +E ++ I +M
Sbjct: 368 AMISVYGRCGLSGKAEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKI 427
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D + N ++ YG + + + MK SG V TY +++S
Sbjct: 428 GFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDS 477
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 100/249 (40%), Gaps = 18/249 (7%)
Query: 66 ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG 125
A S +F + L L+ P L S + R+ + P L E++ + + G
Sbjct: 267 ARSGKFNKVQELFDLMRERGCEPDLVSFNTLINARLKAG---EMTPNLAIELLTEVRRSG 323
Query: 126 QREEAETLILETLSKLGSRE---RELVLFYCNLIDSFCKHD--SKRGFDDTYARLN---- 176
R + + TL SR E V + +++ C+ D + Y R
Sbjct: 324 LR--PDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMISVYGRCGLSGK 381
Query: 177 --QLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
QL N S + + S + G + +++ EEM G Y +I+
Sbjct: 382 AEQLFNDLESRGFFPDAVSYNSFLYAFAREGNVEKVKDICEEMVKIGFGKDEMTYNTMIH 441
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
YG+ G + ++ M+S G D + +++ S G N++ + +M ++G+
Sbjct: 442 MYGKQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKP 501
Query: 293 SVRTYNSVL 301
++RTY++++
Sbjct: 502 TLRTYSALI 510
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I L + + EA ++ EM G++P+ Y +I GY + G + E + M G
Sbjct: 474 LIDSLGKTNKIEEAAGMMSEMLNTGVKPTLRTYSALICGYAKAGKPVEAEETFDCMLRSG 533
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
TR D + +++L + NE R + + ++M GI
Sbjct: 534 TRPDQLAYSVMLDIHLRFNEPKRAMTFYKEMIHDGI 569
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 49/112 (43%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ + ++ M+ G E + + M+ G PS Y+ + R + D+E +
Sbjct: 883 ISKSSILLMLDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAM 942
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ME G + D N VL Y ++ + Q++K+ G+ TYN
Sbjct: 943 LSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYN 994
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 49/96 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ +C+ G +A L E+ VKGL+P+ Y II G + GLL++ ME DG
Sbjct: 16 LVDAMCKSGNLKDARELFSELFVKGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDG 75
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D N+++ + H + SR V + +M+D G
Sbjct: 76 CPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGF 111
>gi|357140426|ref|XP_003571769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g51965,
mitochondrial-like [Brachypodium distachyon]
Length = 637
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 56/107 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ S L ++ Q L ++M+ G+ P F Y +I YGR+GL++ + +ME+
Sbjct: 434 VFSALGKLKQVSFISTLFDKMKASGIAPDLFTYNIMISSYGRVGLVDKASGLFEEMEASS 493
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ D + N +++ G + +L + ++M++ G V TY++++
Sbjct: 494 CKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKGYDPDVFTYSTLI 540
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MIS +G +A L EEM +P Y +I G+ G L++ + +M+ G
Sbjct: 469 MISSYGRVGLVDKASGLFEEMEASSCKPDVITYNTLINCLGKNGDLDEAHILFKEMQEKG 528
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D + ++ +G N++ +M G ++ TYN +L+
Sbjct: 529 YDPDVFTYSTLIECFGKSNKVDMACSLFDEMIAEGCIPNIVTYNILLD 576
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 7/133 (5%)
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM---RVKGLEPSGFEYKCI 230
RLN++++ Y+ + ++ LC+ G EA N+ M G + +
Sbjct: 344 RLNEVLDICDR-YLNKSIYSYLVKSLCKSGHASEAHNVFCRMWNSHESGDRDAFISMLEV 402
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ G+ LE ++ +++ M G D NMV S+ G ++S + KMK SGI
Sbjct: 403 LCNSGKT--LEAID-LLHMMPEKGIDTDIGMYNMVFSALGKLKQVSFISTLFDKMKASGI 459
Query: 291 PFSVRTYNSVLNS 303
+ TYN +++S
Sbjct: 460 APDLFTYNIMISS 472
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G+P EA+ + EM+ KG P+ F Y +++GY G + + +M +
Sbjct: 390 ALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN 449
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VC +++++ + +L ++ ++M GI V Y+S+++
Sbjct: 450 DCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHG 499
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 35/243 (14%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-- 160
EE ++ N + +I+ L K+G+ E L E + K G + +V Y LID C
Sbjct: 342 EEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEK-GCKPNTIV--YSALIDGLCRE 398
Query: 161 -KHDSKRGF------------DDTYARLNQLVNSSSSVYVKRQALKSM------------ 195
K D + + TY+ L + ++ K M
Sbjct: 399 GKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 458
Query: 196 ---ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
I+GLC+ G+ EA + ++M +G++ Y +I+G+ L+E ++ NQM
Sbjct: 459 SILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLC 518
Query: 253 DGTRV--DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++ D V N++L+++ N +SR + L M D G T + L + M
Sbjct: 519 HNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDP 578
Query: 311 LQD 313
QD
Sbjct: 579 PQD 581
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD N +++S+S ++ L +I LC +G +A + M + G+
Sbjct: 152 FDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGY 211
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +++G G +++ ++++M+ +GT + V N+++S+ +LSR + M
Sbjct: 212 TYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNM 271
Query: 286 KDSGIPFSVRTYNSVLNS 303
G + TYNS+++
Sbjct: 272 FLKGCVPNEVTYNSLVHG 289
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 53/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +IS LC+ G A L++ M +KG P+ Y +++G G L+ ++N+M
Sbjct: 247 AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRM 306
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + ++ + H V L +++ G + +Y+S+++
Sbjct: 307 VANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISG 359
>gi|449523013|ref|XP_004168519.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41720-like, partial [Cucumis sativus]
Length = 594
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 61/114 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI + GQ +AE+L ++ G P Y +I Y + E + + +ME++
Sbjct: 362 SMICAYSKQGQLVKAESLFNSLKGSGCCPDLVTYTAMINAYSASEMWEKVCALYQEMEAN 421
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++D++ + ++ ++ N+ S +++ + MK+ GIPF+ + +L++CS +
Sbjct: 422 NIQLDSIACSALMKAFNKGNQASNVLILAEIMKEKGIPFNDANFFEMLSACSIL 475
Score = 44.7 bits (104), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 54/111 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++IS G EA ++ +EM+ G P Y +I +GR + + M+ +
Sbjct: 152 ALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLISTFGRSQQPARAREVFDMMKRN 211
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ + V N ++ +YG + L + V L++M+ GI +V + ++L +C
Sbjct: 212 KCKPNLVSYNALMDAYGSNGYLPQAVDILREMEQDGIHPNVVSICTLLAAC 262
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
L +I L ++ Q +A + MR K E P + II+ Y G +ED + + +
Sbjct: 78 LNIVIHCLIKVKQYGQAIEIFSSMREKRSECRPDVVTFTSIIHLYSVRGQIEDCKAVFST 137
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M ++G + + V N ++S+Y H +MK SG V +Y S++++
Sbjct: 138 MLAEGIKPNIVSYNALISAYASHGMDKEAFSVFDEMKRSGFCPDVVSYTSLIST 191
>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Vitis vinifera]
Length = 879
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 93/203 (45%), Gaps = 11/203 (5%)
Query: 107 FQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-YCNLIDSFCKHD 163
+ + P ++A ++ L K G+ E A L E L G+ +R + + C ++ CK
Sbjct: 159 YTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEG 218
Query: 164 S-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ G R Q + Y ++I G C+ G A L E+++KG P
Sbjct: 219 KLEEGRKLIEDRWGQGCIPNIIFY------NTLIDGYCKKGDMEMANGLFIELKLKGFLP 272
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y II G+ + G + ++R++ +M S G V+ N ++ + H + + V +
Sbjct: 273 TVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETI 332
Query: 283 QKMKDSGIPFSVRTYNSVLN-SC 304
+ M + G + TYN++++ SC
Sbjct: 333 EGMIECGCKPDIVTYNTLISGSC 355
Score = 44.7 bits (104), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C+ G +A I M+ + L P F Y +I GY + L+ +++ +M
Sbjct: 524 AMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKM 583
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V +++ + +L R + ++M+ G+ +V TY+ ++ S
Sbjct: 584 KCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGS 633
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 6/129 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L+Q V + VY +++ G G EA L E KG+ P Y +I GY
Sbjct: 476 LDQSVLPDAFVYA------TLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 529
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G+++D +N+M+ D + V+ Y ++L ++M +V
Sbjct: 530 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNV 589
Query: 295 RTYNSVLNS 303
TY S++N
Sbjct: 590 VTYTSLING 598
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISG C G+ EA+ L+E+ KGL P+ F Y +I+ Y + G + + +M
Sbjct: 349 TLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTER 408
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + D V ++ E+ + +KM + G+ YN +++ +
Sbjct: 409 GHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKL--- 465
Query: 314 LNSNDFPLSILELTEVLNEE---EVSVVKELEDSSV----LDEAMK 352
P + L L E+L++ + V L D + LDEA K
Sbjct: 466 ------PAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARK 505
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 100 RITEESWFQW---NPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCN 154
++ E+ W Q N +I K+G E A L +E K L + E Y
Sbjct: 225 KLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVET-----YGA 279
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+I+ FCK + D +N S + V Q ++I + G +A IE
Sbjct: 280 IINGFCKKGDFKAIDRLLMEMN-----SRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 334
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G +P Y +I G R G + + ++++ Q G + ++ +Y
Sbjct: 335 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGG 394
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R WL +M + G + TY ++++
Sbjct: 395 YDRASNWLIEMTERGHKPDLVTYGALVHG 423
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 12/159 (7%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D CK R D A L + S++ Q+ +I G+C +G+ A +L
Sbjct: 430 LLDYLCK---TRHLDQAMAMLKAI--EGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSS 484
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ KGL P + Y +I G GLL + ++ +M +DG D N++ + +NE
Sbjct: 485 LSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNE 544
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
+ LQ+M G +++ ++ + I+ ML D
Sbjct: 545 TLSAIQLLQEMLGRG-------FSADASTITLIVEMLSD 576
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 155 LIDSFCKHDSKRGFD-DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+I+SFC H ++ F A++ +L + + ++I GLC G+ EA +L +
Sbjct: 115 VINSFC-HLNRVDFGFSVLAKIFKLGHQPDTA-----TFTTLIRGLCVEGKIGEALHLFD 168
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M +G +P+G Y +I+G ++G R++ M + + N ++
Sbjct: 169 KMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDR 228
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ + +M GI +V TYNS+++
Sbjct: 229 QVNEALNIFSEMIAKGISPNVSTYNSIIHG 258
Score = 44.7 bits (104), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G C++ + +A L EEM + L P+ Y +I+G +G L D + ++M +
Sbjct: 359 TLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVAS 418
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V ++L L + + L+ ++ S + +++YN V++
Sbjct: 419 GQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDG 468
>gi|224068256|ref|XP_002302689.1| predicted protein [Populus trichocarpa]
gi|222844415|gb|EEE81962.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I LC G+ +A + EE++V G EP F Y+ +I G + +ED +I ++M+ +
Sbjct: 125 SLIHVLCLAGKVKDAVIVYEELKVSGHEPDAFTYRILIQGCCKSYQMEDATKIFSEMQYN 184
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G DTV N +L ++ +KM G+ S TYN +++
Sbjct: 185 GFLPDTVVYNSLLDGMFKARKVMEACQLFEKMVQDGVRASCWTYNILIDG 234
Score = 42.4 bits (98), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++S + G + A ++ EM K P Y +I G G++G + +++++
Sbjct: 474 SIMSSFVKKGYFNRAWDVFNEMGEKVCPPDIATYNLVIQGLGKMGRADLASSVLDKLMKQ 533
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G +D V N ++ + G + ++MK SG+ V TYN
Sbjct: 534 GGYLDIVMYNTLIDALGKAGRIDEANNLFEQMKISGLNPDVVTYN 578
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 133 LILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQL 178
+++ L K+G L LF Y LID+ C + L
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-------LGKALDL 448
Query: 179 VNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S R + ++I GLC+ + EAE + ++M ++G+ + + +I G +
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++D ++NQM S+G + + + N +L+ Y ++ + L+ M +G V T
Sbjct: 509 DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568
Query: 297 YNSVLNS 303
Y +++N
Sbjct: 569 YGTLING 575
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK+ ++ LNQ+V+ + ++I+ LC + EA
Sbjct: 321 VFTYNIVVNCLCKNGQ---LEEAKGILNQMVDRGCLPDIT--TFNTLIAALCTGNRLEEA 375
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L ++ VKG+ P + + +I ++G R+ +M++ G D V N ++ +
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L+ M+ +G P S TYN++++
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+LE +S G E + L+ F + S AR+ ++ S++ V V
Sbjct: 201 VLMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I+G C++G+ +A I++ G EP Y + G + + ++++ M
Sbjct: 256 --VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D N+V++ + +L L +M D G + T+N+++ + T
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK +D + Q + + + + ++GLC+ A +++
Sbjct: 257 LINGYCKLGR---VEDALGYIQQEI--ADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P F Y ++ + G LE+ + I+NQM G D N ++++ N
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ V T+N ++N+
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINA 400
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 39/183 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+ + EEAE + + L R + F LID CK D K DD + +N
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITFN-TLIDGLCK-DKK--IDDAFELIN 520
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q++ NS + Y K+ +K ++I+GLC+ G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A ++ MR+KG+ P+ Y ++ R + D + +M G D +
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640
Query: 264 MVL 266
+V
Sbjct: 641 IVF 643
>gi|224576615|gb|ACN56981.1| At1g03560-like protein [Capsella rubella]
gi|224576617|gb|ACN56982.1| At1g03560-like protein [Capsella rubella]
gi|224576619|gb|ACN56983.1| At1g03560-like protein [Capsella rubella]
gi|224576621|gb|ACN56984.1| At1g03560-like protein [Capsella rubella]
gi|224576623|gb|ACN56985.1| At1g03560-like protein [Capsella rubella]
gi|224576627|gb|ACN56987.1| At1g03560-like protein [Capsella rubella]
gi|224576629|gb|ACN56988.1| At1g03560-like protein [Capsella rubella]
gi|224576635|gb|ACN56991.1| At1g03560-like protein [Capsella rubella]
gi|224576637|gb|ACN56992.1| At1g03560-like protein [Capsella rubella]
gi|224576647|gb|ACN56997.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGFAINSMFYSSLIDG 101
>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 505
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 59/110 (53%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+ +++ L + G+ A L ++M+ KGL Y +I G GR G L+ ++ +ME
Sbjct: 310 INNVLDCLSKAGRVEAAFELFQDMKFKGLNADTVTYNILINGLGRAGKLDAAGALLLEME 369
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+G + + N ++SSYG + LS +MK+ G+ +V +Y+S++
Sbjct: 370 ENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERGVAPNVVSYSSLI 419
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 10/153 (6%)
Query: 152 YCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID+F K +R FD V S S + S++S L G
Sbjct: 208 YNILIDAFGKTGQLERAFD--------FVGKSRS-FTNEVTYNSLLSSLGRKGDIQGLME 258
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L +M+ KGL + Y +I G G +ED+ ++ +M + + D V N VL
Sbjct: 259 LFGQMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLS 318
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ Q MK G+ TYN ++N
Sbjct: 319 KAGRVEAAFELFQDMKFKGLNADTVTYNILING 351
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL G+ A L+ EM G P+ Y +I YG+ L R+ +M+ G
Sbjct: 348 LINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATRLFLEMKERG 407
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ V + ++ +G + ++MK G P + TYN +++
Sbjct: 408 VAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLID 455
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ G+ EA ++ ++M KGL+P Y +I +G+ G LE V + S
Sbjct: 175 SVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDFVGKSRS- 233
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTI 307
+ V N +LSS G ++ ++ +MK G+ + TY ++ +
Sbjct: 234 --FTNEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGWAGRVEDV 291
Query: 308 MSMLQDLNSNDFPLSILELTEVLN 331
+ ++ ND I+ + VL+
Sbjct: 292 WQLYLEMVDNDIKYDIVTINNVLD 315
Score = 38.1 bits (87), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I L + Q EA N+ +M + P + Y +I G +G ++ + ++ M + G
Sbjct: 106 LIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQG 165
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + V+ ++G + Q+M G+ TYN ++++
Sbjct: 166 CQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDA 214
>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + + II+ L ++G EA+ + ++++K S E ++ Y +ID + K +
Sbjct: 471 NSFVCSAIISGLFEKGAISEAQ-MYFDSVTK--SDVAEEIILYNIMIDGYAKLGNIGEAV 527
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+Y ++ + S + V S+I G C+ G+ EA L++ ++V GL P+ Y
Sbjct: 528 RSYKQIIEKGISPTIV-----TFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 582
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++ GY G + M ++++ME+ + + +V+ L V L+ M G
Sbjct: 583 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARG 642
Query: 290 IPFSVRTYNSVLNS 303
+ TYN+V+ S
Sbjct: 643 LFPDQITYNTVIQS 656
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y ++ CK H+S + YAR ++ + ++I C+ +
Sbjct: 615 YTVVVKGLCKEGRLHESVQLLKYMYAR---------GLFPDQITYNTVIQSFCKAHDLQK 665
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L +M L+PS Y +I G G L+D +R++ ++ R+ V ++
Sbjct: 666 AFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIK 725
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ ++ +++ +M + G S+R Y++V+N
Sbjct: 726 AHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVIN 760
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNS 181
K+G+ EA L L+T+ G + Y L++ +C+ D FD + + +
Sbjct: 554 KKGKLAEAVKL-LDTIKVHGLVPTSVT--YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 610
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ Y ++ GLC+ G+ HE+ L++ M +GL P Y +I + + L+
Sbjct: 611 TQITYT------VVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQ 664
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSS---YGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++ NQM + V N++++ YG+ + R+++ LQ D I + Y
Sbjct: 665 KAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQ---DQSIRLTKVAYT 721
Query: 299 SVLNS-CS-----TIMSMLQDLNSNDFPLSILELTEVLN 331
+++ + C+ + + F +SI + + V+N
Sbjct: 722 TIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVIN 760
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G EA +M G+EP Y + G+ LGL+ ++V +M +G
Sbjct: 311 LLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNG 370
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V +++ + + +KM G+ S+ TY +L+S
Sbjct: 371 LNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 52/104 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ +G +G A +++ M + GL P Y +I G+ ++G +E+ ++ +M S G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++ V ++LSS + V+ L +M+ G+ + TY+
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S +Y ++ISGL E G EA+ + + + Y +I GY +LG +
Sbjct: 465 SKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 524
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSV 300
+ R Q+ G V N ++ + +L+ V L +K G +P SV TY ++
Sbjct: 525 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSV-TYTTL 583
Query: 301 LNS 303
+N
Sbjct: 584 MNG 586
>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 496
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ +EA+ + + K G + V+ Y +L+D +C + + Q
Sbjct: 231 KEGKVKEAKN-VFAAMMKKGFKPN--VVTYSSLMDGYCLVKEVNKAKSIFNNMAQ----- 282
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V Q+ +I+G C++ A NL EEM + + P+ Y +I G + G +
Sbjct: 283 GGVNPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISY 342
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++V++M G D + + +L + ++ + + L K+KD G+ ++ TY ++N
Sbjct: 343 ALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILIN 402
Query: 303 S 303
Sbjct: 403 G 403
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 19/149 (12%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS-------MISGLCE 201
++ Y +L+D+ CK+ D A L +L K Q L+ +I+GLC+
Sbjct: 359 IITYSSLLDALCKNHPG---DKAIALLTKL---------KDQGLQPNMYTYTILINGLCK 406
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G+P +A+N+ E++ VKG + Y +I+ + G+ + ++++ME +G + V
Sbjct: 407 GGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVT 466
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+++ S D +E + L +M G+
Sbjct: 467 YEIIIRSLFDKDENDKAEKLLLEMITRGL 495
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+S C+ G+ EA+N+ M KG +P+ Y ++ GY + + + I N M G
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N++++ + + ++M I +V TYNS+++
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDG 333
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L+ +++ +GL+P+ + Y +I G + G ED + I +
Sbjct: 364 SLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVK 423
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
G ++ +++ + ++ + L KM+++G IP +V TY ++ S
Sbjct: 424 GYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAV-TYEIIIRS 473
>gi|357442909|ref|XP_003591732.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480780|gb|AES61983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 344
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID CK + +D Y ++++ S V S+I G C +GQ +A
Sbjct: 17 VVMYNTIIDGLCKD---KLVNDAYELYSEMIAEKISPDV--ATFNSLIYGFCIIGQLKDA 71
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +M +K + PS + + ++ G + G +++ + ++ M DG + V ++
Sbjct: 72 FGLFSQMVLKNINPSVYTFTILVDGLCKEGKMKEAKSVIAMMMKDGVLPNVVTYTSIMEG 131
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y NE+++ + + G+ + ++YN ++N
Sbjct: 132 YCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMING 166
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 101/210 (48%), Gaps = 22/210 (10%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
LI FC + D + +Q+V N + SVY ++ GLC+ G+ EA+++I
Sbjct: 58 LIYGFCIIGQLK---DAFGLFSQMVLKNINPSVY----TFTILVDGLCKEGKMKEAKSVI 110
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
M G+ P+ Y I+ GY + + + + + G +T N++++ +
Sbjct: 111 AMMMKDGVLPNVVTYTSIMEGYCLVNEVNKTKHVFRTISRMGVAPNTQSYNIMINGFCKI 170
Query: 273 NELSRMVLWLQKMKDSGI-PFSVRTYNSVLNS-C------STIMSMLQDLNSNDFPLSIL 324
++ ++ ++M GI P +V TY+S+++ C S +M + +N +PL++L
Sbjct: 171 KIVNEALILFKEMCCRGIVPITV-TYSSLIDGLCKSTMLGSLLMRCMLMVNHLIYPLTVL 229
Query: 325 ELTEVLN----EEEVSVVKELEDSSVLDEA 350
+ + ++ +++VK+++D L A
Sbjct: 230 YIDALCKSNHLDKAIALVKKIKDQGRLKNA 259
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 114/271 (42%), Gaps = 41/271 (15%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQ 126
P +L +L + T P L+ F +R P + + +I K+G+
Sbjct: 26 PPSTPTTSLIDVLPAECTGPELALAVFGRLLRT------GLGPDVCSYNTLIDGFSKEGE 79
Query: 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKR--------GFDDTYAR 174
++A L + + + S + V+ Y +LID CK S+R G
Sbjct: 80 VDKAYELFYKMIEQSVSPD---VVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKT 136
Query: 175 LNQLVNSSSSVYVKRQALK------------------SMISGLCEMGQPHEAENLIEEMR 216
N L+ S+ + +++++ S I LC + EA+++ + M
Sbjct: 137 YNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMV 196
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+KG +P+ Y +++GY G +M +VN M S G + N+++++Y +
Sbjct: 197 LKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMD 256
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ +L + M++ G+ T+ +V++S I
Sbjct: 257 KAMLIFEDMQNKGMIPDTVTFATVISSLCRI 287
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN I + C+H+ + D + + L ++ + +++ G G +L
Sbjct: 172 CNSFIHALCRHNRIKEAKDIFDSM-VLKGPKPNII----SYSTLLHGYAAEGCFANMNSL 226
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG+ P+ + +I Y R G+++ I M++ G DTV V+SS
Sbjct: 227 VNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCR 286
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
L + M D G+P S Y ++ C
Sbjct: 287 IGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGC 319
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 169 DDTYARLNQLVN--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ +A +N LVN S + + +I+ G +A + E+M+ KG+ P
Sbjct: 217 EGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVT 276
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ +I R+G L+D N M G ++ +H EL + + +M
Sbjct: 277 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMM 336
Query: 287 DSGI-PFSVRTYNSVLNS 303
+ I P V+ ++S++N+
Sbjct: 337 NKDIPPPGVKYFSSIINN 354
>gi|115529193|dbj|BAF34329.1| pentatricopeptide repeat protein [Physcomitrella patens]
gi|115529195|dbj|BAF34330.1| pentatricopeptide repeat protein [Physcomitrella patens]
Length = 513
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)
Query: 97 LYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETL--ILE---TLSKLGSRERE 147
LY++I E +SWF+ + ++I ++G EAE + I+E + LG+
Sbjct: 155 LYLKIFEWGLLQSWFEAGVRDYTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGA---- 210
Query: 148 LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQP 205
+ LI ++ G ++ Q++ S ++ A+ K++I +G P
Sbjct: 211 ----FTVLIAAY-------GRAKMLEKVKQVLQDVSLAGLELDAVFYKTVIVAYGSVGMP 259
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EAE+++ M G+ Y ++ YGRLG D +R+ ++M G R D +
Sbjct: 260 KEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMHLKGFRGDLKAFTAL 319
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIP---------FSVRTYNSVLNSCSTIMSMLQDLNS 316
L +Y + + + L Q ++ +G+ SV ++LN + ++ L+
Sbjct: 320 LEAYSNAQDYANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLNRAAEVIVELEGAGM 379
Query: 317 NDFPLSILEL 326
P+++ L
Sbjct: 380 RFGPVTLTSL 389
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LID CK + +AR Q++ V S+I GLC+ G EA
Sbjct: 303 VVIYNSLIDGLCKMG-----ELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEA 357
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
L++EMR KG+ P+ Y +I G+ + + ++VN+M+S+G
Sbjct: 358 LGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNG 403
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC+ Q +L++EM+ +G P+ Y +I+G+ G ++ I+++ME G
Sbjct: 132 LINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRG 191
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+TV ++ D E+ R +L L++MK G
Sbjct: 192 ITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRG 226
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI C+ S F + LN++V + V S+I GLC+MG+ A +
Sbjct: 271 YTALIHGLCQKGS---FLEAAVLLNEMVAIGCELDVV--IYNSLIDGLCKMGELDFAREM 325
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
M KG+ P F Y +I G GLL++ ++ +M + G ++V +++ +
Sbjct: 326 QILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQ 385
Query: 272 HNELSRMVLWLQKMKDSGI 290
+ + + +MK +G+
Sbjct: 386 ADRTDHALQLVNEMKSNGL 404
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I+GLC+ GQ EA + EM KG P F Y +I G + LE ++++M++ G
Sbjct: 98 INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V ++ + + + L +M+ GI + TY +++
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALI 203
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 76/179 (42%), Gaps = 6/179 (3%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E A L+L+ + G+ V+ Y LI C+ K F+ L++++ S
Sbjct: 210 GEVERA-ILVLKEMKLRGNECCPNVVTYTQLIHGLCQ---KGLFEMGMEFLDEMI--ISG 263
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ ++I GLC+ G EA L+ EM G E Y +I G ++G L+
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAR 323
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ M G D ++ D L + +Q+M+ GI + TY +++N
Sbjct: 324 EMQILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLING 382
Score = 42.4 bits (98), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 88/210 (41%), Gaps = 19/210 (9%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI FC D + + ++V ++I GLC+ G+ A
Sbjct: 161 VVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTV-----TYTALIQGLCDCGEVERA 215
Query: 209 ENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+++EM+++G E P+ Y +I+G + GL E +++M G + ++
Sbjct: 216 ILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALI 275
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFP--LSIL 324
+ L +M G V YNS+++ L + DF + IL
Sbjct: 276 HGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDG-------LCKMGELDFAREMQIL 328
Query: 325 ELTEVLNEE---EVSVVKELEDSSVLDEAM 351
+ + + + S+++ L D+ +LDEA+
Sbjct: 329 MVEKGVAPDVFTYTSLIQGLCDAGLLDEAL 358
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 59/110 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE + ++M ++G+ + + +I G + ++D ++NQM S+
Sbjct: 374 TIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISE 433
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + + N +L+ Y ++ + L+ M +G V TY +++N
Sbjct: 434 GLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLING 483
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK+ ++ LNQ+V+ + ++I+ LC + EA
Sbjct: 229 VFTYNIVVNCLCKNGQ---LEEAKGILNQMVDRGCLPDIT--TFNTLIAALCTGNRLEEA 283
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L ++ VKG+ P + + +I ++G R+ +M++ G D V N ++ +
Sbjct: 284 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 343
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L+ M+ +G P S TYN++++
Sbjct: 344 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 378
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+LE +S G E + L+ F + S AR+ ++ S++ V V
Sbjct: 109 VLMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 163
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I+G C++G+ +A I++ G EP Y + G + + ++++ M
Sbjct: 164 --VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 221
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D N+V++ + +L L +M D G + T+N+++ + T
Sbjct: 222 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 276
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 54/110 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ ++GLC+ A +++ M +G +P F Y ++ + G LE+ + I+NQM
Sbjct: 199 TFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDR 258
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D N ++++ N L + +++ G+ V T+N ++N+
Sbjct: 259 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINA 308
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 39/183 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+ + EEAE + + L R + F LID CK D K DD + +N
Sbjct: 375 IIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITFN-TLIDGLCK-DKK--IDDAFELIN 428
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q++ NS + Y K+ +K ++I+GLC+ G
Sbjct: 429 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 488
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A ++ MR+KG+ P+ Y ++ R + D + +M G D +
Sbjct: 489 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 548
Query: 264 MVL 266
+V
Sbjct: 549 IVF 551
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 133 LILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQL 178
+++ L K+G L LF Y LID+ C + L
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-------LGKALDL 448
Query: 179 VNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S R + ++I GLC+ + EAE + ++M ++G+ + + +I G +
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++D ++NQM S+G + + + N +L+ Y ++ + L+ M +G V T
Sbjct: 509 DKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568
Query: 297 YNSVLNS 303
Y +++N
Sbjct: 569 YGTLING 575
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK+ ++ LNQ+V+ + ++I+ LC + EA
Sbjct: 321 VFTYNIVVNCLCKNGQ---LEEAKGILNQMVDRGCLPDIT--TFNTLIAALCTGNRLEEA 375
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L ++ VKG+ P + + +I ++G R+ +M++ G D V N ++ +
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L+ M+ +G P S TYN++++
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 44.7 bits (104), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
++LE +S G E + L+ F + S AR+ ++ S++ V V
Sbjct: 201 VIMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I+G C++G+ +A I++ G EP Y + G + + ++++ M
Sbjct: 256 --VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D N+V++ + +L L +M D G + T+N+++ + T
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK +D + Q + + + + ++GLC+ A +++
Sbjct: 257 LINGYCKLGR---VEDALGYIQQEI--ADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P F Y ++ + G LE+ + I+NQM G D N ++++ N
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ V T+N ++N+
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINA 400
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 39/183 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+ + EEAE + + L R + F LID CK D K DD + +N
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITFN-TLIDGLCK-DKK--IDDAFELIN 520
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q++ NS + Y K+ +K ++I+GLC+ G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A ++ MR+KG+ P+ Y ++ R + D + +M G D +
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640
Query: 264 MVL 266
+V
Sbjct: 641 IVF 643
>gi|297812073|ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319757|gb|EFH50179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 483
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +MI G CE G A L EM KG+ P+ F Y +++G+ + G + E N
Sbjct: 318 RVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMMHGHFKRGEISLGEAFYN 377
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M +G T+ N V+ H + +KM ++G+ + TYN+++
Sbjct: 378 EMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIFKKMSETGVTPNAITYNALI 430
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 24/180 (13%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLV------NSSSSVYVKRQALKSMISGLCEMGQP 205
Y LI FC+ ++ YA +++++ N S+Y ++ +I GLC +
Sbjct: 251 YAKLISGFCEIEN-------YACISEILHTMIAWNHFPSIYTYQR----IIKGLCMNKKE 299
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA + + ++ KG P Y +I+G+ G L ++ +M G R + N++
Sbjct: 300 LEAYCIFKNLKEKGYAPDRVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVM 359
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
+ + E+S + +M +G Y SC+T++ L +D I +
Sbjct: 360 MHGHFKRGEISLGEAFYNEMLRNG-------YGETTLSCNTVIRGLCSHGKSDEAFEIFK 412
>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g13630-like [Vitis
vinifera]
Length = 829
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 92/194 (47%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + + II+ L ++G EA+ + ++++K S E ++ Y +ID + K +
Sbjct: 479 NSFVCSAIISGLFEKGAISEAQ-MYFDSVTK--SDVAEEIILYNIMIDGYAKLGNIGEAV 535
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+Y ++ + S + V S+I G C+ G+ EA L++ ++V GL P+ Y
Sbjct: 536 RSYKQIIEKGISPTIV-----TFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTT 590
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++ GY G + M ++++ME+ + + +V+ L V L+ M G
Sbjct: 591 LMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARG 650
Query: 290 IPFSVRTYNSVLNS 303
+ TYN+V+ S
Sbjct: 651 LFPDQITYNTVIQS 664
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 13/155 (8%)
Query: 152 YCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y ++ CK H+S + YAR ++ + ++I C+ +
Sbjct: 623 YTVVVKGLCKEGRLHESVQLLKYMYAR---------GLFPDQITYNTVIQSFCKAHDLQK 673
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L +M L+PS Y +I G G L+D +R++ ++ R+ V ++
Sbjct: 674 AFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIK 733
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ ++ +++ +M + G S+R Y++V+N
Sbjct: 734 AHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVIN 768
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 97/219 (44%), Gaps = 22/219 (10%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNS 181
K+G+ EA L L+T+ G + Y L++ +C+ D FD + + +
Sbjct: 562 KKGKLAEAVKL-LDTIKVHGLVPTSVT--YTTLMNGYCEEGDMHSMFDMLHEMEAKAIKP 618
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ Y ++ GLC+ G+ HE+ L++ M +GL P Y +I + + L+
Sbjct: 619 TQITYT------VVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQ 672
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSS---YGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++ NQM + V N++++ YG+ + R+++ LQ D I + Y
Sbjct: 673 KAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQ---DQSIRLTKVAYT 729
Query: 299 SVLNS-CS-----TIMSMLQDLNSNDFPLSILELTEVLN 331
+++ + C+ + + F +SI + + V+N
Sbjct: 730 TIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVIN 768
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G EA +M G+EP Y + G+ LGL+ ++V +M +G
Sbjct: 311 LLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKVVQRMLLNG 370
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V +++ + + +KM G+ S+ TY +L+S
Sbjct: 371 LNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419
Score = 45.8 bits (107), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 82/188 (43%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+++ L K G+ +EA ++L + +G + +L Y LI CK + + Y +
Sbjct: 416 LLSSLCKSGRIDEA-VILLHEMEVIGLKPD--LLTYSVLIHGLCKRGAVEEAIELYEEM- 471
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
S +Y ++ISGL E G EA+ + + + Y +I GY +
Sbjct: 472 ----CSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAK 527
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVR 295
LG + + R Q+ G V N ++ + +L+ V L +K G +P SV
Sbjct: 528 LGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSV- 586
Query: 296 TYNSVLNS 303
TY +++N
Sbjct: 587 TYTTLMNG 594
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ +G +G A +++ M + GL P Y +I G+ ++G +E+ ++ +M S G
Sbjct: 346 LANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQG 405
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ V ++LSS + V+ L +M+ G+ + TY+ +++
Sbjct: 406 LKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHG 454
>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g12300, mitochondrial-like [Glycine max]
Length = 450
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 96/227 (42%), Gaps = 21/227 (9%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
G + V Y +ID+ CK+ + + Y +++ S V + MI G C+
Sbjct: 203 GRLTKPNVEMYNTIIDALCKY---QLVSEAYGLFSEMTAKGISANVVSYNI--MIKGFCK 257
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
EA NL +EM K + P+ Y ++ G + G + + ++++M G D +
Sbjct: 258 SKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVIT 317
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLN 315
N ++ + L R + KMKD F T+ +L+ + QDL
Sbjct: 318 YNSLIDGLCKNGHLDRAIALFNKMKDX--RFDRLTFTILLDGLCKGGRLKDAQEVFQDLL 375
Query: 316 SNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWD 354
+ ++ L + ++N EE +++ ++ED+ + A+ ++
Sbjct: 376 TKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFE 422
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +LID CK+ G D R L N R ++ GLC+ G+ +A
Sbjct: 315 VITYNSLIDGLCKN----GHLD---RAIALFNKMKDXRFDRLTFTILLDGLCKGGRLKDA 367
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ + +++ K + + Y +I GY + GLLE+ + ++ME +G V +++++
Sbjct: 368 QEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINA 427
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
+ +E + L +M G+
Sbjct: 428 LFEKDENDKAEKLLHEMIARGL 449
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +LI+ FC HD
Sbjct: 249 KINPNLVTFNALIDAFV-KEGKFVEAEKLHDDMIKRSIDPD---IFTYNSLINGFCMHDR 304
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 305 ---LDKAKQMFEFMV--SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 359
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 360 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 419
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 420 MQKSEIKLDIYIYTTMI 436
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G+C+ G+ + +L + +KG++P+ Y +I G LL++ ++ +M+ D
Sbjct: 434 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 493
Query: 254 GTRVDTVCSNMVLSSY 269
G D+ N ++ ++
Sbjct: 494 GPLPDSGTYNTLIRAH 509
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 63/153 (41%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +++ CK RG D + LN++ ++ + ++I LC+ +A N
Sbjct: 152 YGVVVNGLCK----RGDIDLAFNLLNKM--EAAKIEADVVIFNTIIDSLCKYRHVDDALN 205
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L +EM KG+ P+ Y +I G D ++++ M + V N ++ ++
Sbjct: 206 LFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFV 265
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ M I + TYNS++N
Sbjct: 266 KEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 298
>gi|449433119|ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
gi|449480346|ref|XP_004155867.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Cucumis sativus]
Length = 404
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/306 (21%), Positives = 127/306 (41%), Gaps = 36/306 (11%)
Query: 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALN----ALSHLLSPDTTH--- 87
+T+ ++ +S L +T+ KA ++ + + SPQ L+ A ++ P+
Sbjct: 75 ITETQKQAISQLPPKMTKRCKA---VMKQIICFSPQKGELSDMLAAWVRIMKPERADWLL 131
Query: 88 --PRLSSLAFPLYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL 141
L L PLY+++ E E F+ N + +II KQ Q E+AE ++L
Sbjct: 132 VLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHYGKQNQLEDAEKVLLSM---- 187
Query: 142 GSRERELV---LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG 198
RER V + +I + K D T+ L L + +++ +MI
Sbjct: 188 --RERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQP-----LDKRSFGAMIMA 240
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
G P E E +++EM K + YK ++ Y +G E +R+ + ++ D
Sbjct: 241 YVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDAIQLAAITPD 300
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQ 312
+++++Y + + M+ +GI S + L N ++ + +L
Sbjct: 301 EKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENRLNSALELLI 360
Query: 313 DLNSND 318
DL ++
Sbjct: 361 DLEKDN 366
>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
Length = 862
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 84/199 (42%), Gaps = 7/199 (3%)
Query: 107 FQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
F P +V+ ++ L + + EEA L+ G V+ Y +ID CK
Sbjct: 155 FGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCK--- 211
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ D L +++ + V + ++I GLC+ AE +++ M KG++P
Sbjct: 212 AQAVDRAEGVLQHMIDKGVKLDVVTYS--TIIDGLCKAQAVDRAEGVLQHMIDKGVKPDV 269
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y II G + ++ E ++ M G + D V N ++ + R LQ
Sbjct: 270 VTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQH 329
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M D + ++TYN +++
Sbjct: 330 MIDKDVKPDIQTYNCLIHG 348
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 70/163 (42%), Gaps = 8/163 (4%)
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+L++S V V+ + ++I G C G+ EA L++ M GL+P Y ++ GY
Sbjct: 570 RLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGY 629
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G +++ + +M G V + +L S M SG + +
Sbjct: 630 CKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDI 689
Query: 295 RTYNSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVLN 331
TYN +LN C T + Q L S D +I+ T +++
Sbjct: 690 YTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMID 732
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 10/211 (4%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
A L + E+ P +V II L K + AE ++ + K + V+
Sbjct: 180 ALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLD---VVT 236
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID CK + D L +++ V ++I GLC+ AE +
Sbjct: 237 YSTIIDGLCK---AQAVDRAEGVLQHMIDKGVKPDV--VTYNTIIDGLCKAQAVDRAEGV 291
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ M KG++P Y II G + ++ + ++ M + D N ++ Y
Sbjct: 292 LQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLS 351
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
E +V L++M G+ V TY+ +L+
Sbjct: 352 TGEWKEVVRRLEEMYARGLDPDVVTYSLLLD 382
Score = 47.0 bits (110), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC+ G+ EA + M KG++P+ Y +++GY G + D+ +++ M ++G +
Sbjct: 384 LCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPN 443
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+VL +Y + + +M G+ V TY ++++
Sbjct: 444 NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDA 488
Score = 38.1 bits (87), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/109 (20%), Positives = 51/109 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC++G+ +A +M G+ P+ + ++YG + E E + +M G
Sbjct: 485 LIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQG 544
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R + V N ++ + + ++ + M+ G+ +V +YN+++
Sbjct: 545 VRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGG 593
>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g09680-like [Glycine max]
Length = 509
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 87/193 (45%), Gaps = 10/193 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV +I L K G +EA L+ E +S G R + + LID CK+
Sbjct: 280 PDLVTYNALINGLCKVGDLKEARRLVNE-MSASGLRPDRIT--FTTLIDGCCKYGDMESA 336
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ R+ + + + A +ISGLC G+ H+AE ++ +M G +P Y
Sbjct: 337 LEIKRRMVE-----EGIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYT 391
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
++ + + G + +++ +M+SDG V N +++ ++ + L M +
Sbjct: 392 MVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNV 451
Query: 289 GIPFSVRTYNSVL 301
G+ + TYN +L
Sbjct: 452 GVAPNDITYNILL 464
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+ + + K G R V+ + LI CK + + GF RL V S V
Sbjct: 163 LVFDEIPKRGLRPT--VVSFNTLISGCCKAGAVEEGF-----RLKG-VMESERVCPDVFT 214
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I+GLC+ G+ E L +EM KGL P+G + +I G + G ++ + M
Sbjct: 215 FSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMML 274
Query: 252 SDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308
+ G R D V N + L GD E R+V +M SG+ T+ ++++ C
Sbjct: 275 AQGVRPDLVTYNALINGLCKVGDLKEARRLV---NEMSASGLRPDRITFTTLIDGCCKYG 331
Query: 309 SM 310
M
Sbjct: 332 DM 333
Score = 46.6 bits (109), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 50/109 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC++G EA L+ EM GL P + +I G + G +E I +M +
Sbjct: 287 ALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEE 346
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D V +++S + L+ M +G TY V++
Sbjct: 347 GIELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVD 395
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 47/96 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G+ A + M +G+ P Y +I G ++G L++ R+VN+M + G
Sbjct: 253 LIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASG 312
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
R D + ++ + ++ + ++M + GI
Sbjct: 313 LRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGI 348
Score = 38.1 bits (87), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 17/201 (8%)
Query: 47 ALAVTRDSKAASRLISKFVASS--PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
L D K A RL+++ AS P I L + + + S A + R+ EE
Sbjct: 291 GLCKVGDLKEARRLVNEMSASGLRPDRITFTTL---IDGCCKYGDMES-ALEIKRRMVEE 346
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ + +I+ L + G+ +AE ++ + LS G + + Y ++D FCK +
Sbjct: 347 G-IELDDVAFTVLISGLCRDGRVHDAERMLRDMLSA-GFKPDDPT--YTMVVDCFCKKGN 402
Query: 165 -KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
GF +L + + S V ++++GLC+ GQ A+ L++ M G+ P+
Sbjct: 403 VXMGF-----KLLKEMQSDGHV-PGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPN 456
Query: 224 GFEYKCIIYGYGRLGLLEDME 244
Y ++ G+ + G D++
Sbjct: 457 DITYNILLEGHSKHGSSVDVD 477
>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Glycine max]
Length = 892
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y NLI C+ + +AR+ + + + ++ LCE G+ EA +L
Sbjct: 258 YTNLIHGLCEAGKLHEALEFWARMRE-----DGCFPTVRTYTVLVCALCESGRELEALSL 312
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EMR +G EP+ + Y +I + G +++ +++N+M G V N ++ SY
Sbjct: 313 FGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCK 372
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ V L M+ + +VRTYN ++
Sbjct: 373 RGMMEDAVGVLGLMESKKVCPNVRTYNELI 402
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G+ EA ++ EM KG+ PS + +I Y + G++ED ++ MES
Sbjct: 331 LIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKK 390
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N ++ + + R + L KM +S + V TYN++++
Sbjct: 391 VCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHG 439
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 69/284 (24%), Positives = 114/284 (40%), Gaps = 54/284 (19%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMR--ITEESWFQWNPK 112
A L++K V S SP + N L H L S L F L +R + + W +N
Sbjct: 414 AMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL-FRLMIRDGFSPDQW-TFNAF 471
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172
+V L + G+ EA ILE+L + + E Y LID +CK +
Sbjct: 472 MVC-----LCRMGRVGEAHQ-ILESLKEKHVKANEHA--YTALIDGYCKAGKIEHAASLF 523
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR---VK----------- 218
R+ +S+ MI GL + G+ +A L+E+M VK
Sbjct: 524 KRMLAEECLPNSI-----TFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVE 578
Query: 219 ---------------------GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G +P+ Y I Y G LE+ E +V +++++G +
Sbjct: 579 EVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLL 638
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D+ N+++++YG L L++M +G S TY+ ++
Sbjct: 639 DSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILM 682
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF-DDTYARL 175
+I +L K+G+ +EA ++ E + K + V+ + LI S+CK RG +D L
Sbjct: 331 LIDYLCKEGRMDEALKMLNEMVEKGVAPS---VVPFNALIGSYCK----RGMMEDAVGVL 383
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ S V + +I G C A L+ +M L P Y +I+G
Sbjct: 384 GLM--ESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC 441
Query: 236 RLGLLEDMERIVNQMESDGTRVD 258
+G+++ R+ M DG D
Sbjct: 442 EVGVVDSASRLFRLMIRDGFSPD 464
>gi|255583549|ref|XP_002532531.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527743|gb|EEF29847.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 212
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID +CK + N ++ V + A ++ISGLC+ G+ +AE
Sbjct: 23 YTTLIDGYCKEGD---LESALEIRNIMI--KEGVELDIVAFTAIISGLCKEGKVIDAERA 77
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM G +P Y ++ G+ + G ++ +++ +M+SDG V N++++ Y
Sbjct: 78 LREMLKAGFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDGHVPGVVTYNVLMNGYCK 137
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ + L M + G+ TYN +L
Sbjct: 138 QSQMKNANMLLDAMMNLGVVPDDITYNILL 167
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G A + M +G+E + II G + G + D ER + +M
Sbjct: 25 TLIDGYCKEGDLESALEIRNIMIKEGVELDIVAFTAIISGLCKEGKVIDAERALREMLKA 84
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D MV+ + ++ L++M+ G V TYN ++N
Sbjct: 85 GFKPDDATYTMVMDGFCKKGDMKTGFKLLKEMQSDGHVPGVVTYNVLMNG 134
>gi|255686012|gb|ACU28495.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 133
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 12 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 71
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 72 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 125
Score = 44.3 bits (103), Expect = 0.13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 43 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 102
Query: 250 MESDGTRVDTVCSNMVLS 267
M +G D N +L+
Sbjct: 103 MMDNGVDPDVYTYNSLLN 120
>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
Length = 1144
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 92/198 (46%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP V +I L K G+ E+A E +I E LS + Y +LI S C D
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN-------IVYNSLIHSLCIFD 458
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 459 K---WDKAKELILEMLDRG--ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ +++ M S G + D V N +++ Y + + ++ +
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M+ SG+ + TYN +L
Sbjct: 574 EMESSGVSPDIITYNIIL 591
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y ++ GY G L +M +++ M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + ++++ +Y ++ + +L KM+ G+ TY +V+
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ F K D Y +++++ + S+I+ LC+ +A
Sbjct: 199 VVSYTTVINGFFKEGD---LDKAYGTYHEMLDRG--ILPNVVTYSSIIAALCKAQAMDKA 253
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ M G+ P+ Y I++GY G ++ + +M SDG D V N ++
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 12/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K+G+ E+E L + + ++G + ++ Y LID +C +L+ S
Sbjct: 491 KEGRVIESEKL-FDLMVRIGVKPD--IITYSTLIDGYC-------LAGKMDEATKLLASM 540
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
SV +K + ++I+G C++ + +A L EM G+ P Y I+ G +
Sbjct: 541 VSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRT 600
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ + + GT+++ N++L +N + Q + + + RT+N +
Sbjct: 601 AAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIM 660
Query: 301 LNS 303
+ +
Sbjct: 661 IGA 663
Score = 38.9 bits (89), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ Y +L+D CK+ ++++ FD R + + +++ G G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKR---------GLKPEITTYGTLLQGYATKGA 354
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
E L++ M G+ P+ + + +I Y + G ++ + ++M G DTV
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V+ + + + ++M D + YNS+++S
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++ GLC+ + EA L++ M G + P Y +I G+ + G L+ ++M
Sbjct: 168 LLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + V + ++++ + + + L M +G+ + RTYNS+++ CS+
Sbjct: 228 RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63130, mitochondrial; Flags: Precursor
gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 630
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 321 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 376
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 377 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I+G+ + ++ + + QM SDG D + +++L ++ ++ ++ +
Sbjct: 432 VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEY 491
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 492 LQRSKMEPDIYTYN 505
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L S+++G C + +A +L+ +M G +P F + +I+G R + +V++M
Sbjct: 153 TLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V +V++ ++ + L+KM+ I V YN+++++
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Score = 42.7 bits (99), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y ++ G+ R GL E+ + + +M+ +G
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 255 TRVDTVCSNMVLSSY 269
D+ N ++ ++
Sbjct: 567 PLPDSGTYNTLIRAH 581
>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Brachypodium distachyon]
Length = 554
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 91/195 (46%), Gaps = 10/195 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LVA ++ L + + AE+ I+E + G + ++ Y LID CK G
Sbjct: 323 PDLVAYNALVNGLCRARNLKAAES-IVEEMKNAGLKPDKVT--YTTLIDGCCKD----GK 375
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D + Q + + V + ++ISGL + G+P +AE ++ EM LEP Y
Sbjct: 376 LDMAMDIKQKM-AEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYT 434
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I + R G ++ +++ +M++ G + V N++++ ++ + L M +
Sbjct: 435 MVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNI 494
Query: 289 GIPFSVRTYNSVLNS 303
G+ TYN +L+
Sbjct: 495 GVSPDDITYNILLDG 509
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 25/215 (11%)
Query: 113 LVAEIIAFLDKQGQREEAETLILETL-----------SKLGSR---ERELVLFYCNLIDS 158
LV+E+ A +G +A +L+L L S L SR E FY L+D+
Sbjct: 121 LVSELAAAYADEGLLPDACSLVLLALRRGISLPAPVCSGLMSRLPSTPEAYTFYLQLLDA 180
Query: 159 FCKHDSKRGFD---DTYARLNQLVNSSS-------SVYVKRQALKSMISGLCEMGQPHEA 208
++ R F+ + RL +LV++ SV ++ISG+C
Sbjct: 181 GMAPET-RLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAV 239
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L +EM G++P + Y +I G+ R G +E+ ++ N+M G + V ++ +
Sbjct: 240 DGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDA 299
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ + Q M+ G+ + YN+++N
Sbjct: 300 HCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNG 334
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/197 (20%), Positives = 73/197 (37%), Gaps = 40/197 (20%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ + LID+ CK + D Y + V A ++++GLC A
Sbjct: 290 AVVFTTLIDAHCKEGNVNAGMDLYQDMR-----VRGVMPDLVAYNALVNGLCRARNLKAA 344
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE--------------------------- 241
E+++EEM+ GL+P Y +I G + G L+
Sbjct: 345 ESIVEEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISG 404
Query: 242 --------DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
D ER++ +M D MV+ ++ ++ L++M++ G
Sbjct: 405 LSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPG 464
Query: 294 VRTYNSVLNSCSTIMSM 310
V TYN ++N + M
Sbjct: 465 VVTYNVIMNGLCKLGQM 481
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQ 204
V Y LI FC+ ++ N++ VN ++ V+ ++I C+ G
Sbjct: 255 VYTYGALIKGFCRTGR---MENAVKMFNEMRDTGVNPNAVVFT------TLIDAHCKEGN 305
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+ +L ++MRV+G+ P Y ++ G R L+ E IV +M++ G + D V
Sbjct: 306 VNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEMKNAGLKPDKVTYTT 365
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
++ +L + QKM + + TY ++++ S
Sbjct: 366 LIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLS 406
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 13/132 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYARL 175
+I+ L K G+ +AE ++ E + + Y +ID+FC K D K GF L
Sbjct: 401 LISGLSKAGRPVDAERVLREMMEAALEPDNTT---YTMVIDAFCRKGDVKTGFK----LL 453
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG-- 233
++ N V +++GLC++GQ A+ L+ M G+ P Y ++ G
Sbjct: 454 KEMQNKGKKPGV--VTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQC 511
Query: 234 -YGRLGLLEDME 244
+G++ E++E
Sbjct: 512 KHGKVANSEELE 523
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 41/82 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C G L++EM+ KG +P Y I+ G +LG +++ + +++ M + G
Sbjct: 436 VIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIG 495
Query: 255 TRVDTVCSNMVLSSYGDHNELS 276
D + N++L H +++
Sbjct: 496 VSPDDITYNILLDGQCKHGKVA 517
>gi|26450121|dbj|BAC42180.1| unknown protein [Arabidopsis thaliana]
Length = 217
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +MI G CE G A L EM KG+ P+ F Y II+G+ + G + +E N
Sbjct: 52 RVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVIIHGHFKRGEISLVEAFYN 111
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M +G + N ++ + H + + M ++G+ + TYN+++
Sbjct: 112 EMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALI 164
>gi|42573413|ref|NP_974803.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122214363|sp|Q3E9F0.1|PP392_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18475
gi|110737103|dbj|BAF00503.1| hypothetical protein [Arabidopsis thaliana]
gi|332005185|gb|AED92568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 506
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 60/112 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+G C G+ A+ +++ M+ G P+ + Y ++ G+ ++G +++ ++ ++++ G
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTG 333
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++DTV +++ + + E + L +MK S TYN +L S+
Sbjct: 334 LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSS 385
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 17/220 (7%)
Query: 86 THPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE 145
H R S A L+ + + +P +I + G+ E A+ IL+ + K G
Sbjct: 244 AHSR-SKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK-ILDFMKKNGCNP 301
Query: 146 RELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
V Y L++ FCK ++K+ FD+ + + + ++++ C
Sbjct: 302 N--VYNYSALMNGFCKVGKIQEAKQTFDEV---------KKTGLKLDTVGYTTLMNCFCR 350
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G+ EA L+ EM+ Y I+ G G E+ ++++Q S+G ++
Sbjct: 351 NGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGS 410
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++L++ + EL + V +L M + GI T+N ++
Sbjct: 411 YRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELV 450
Score = 44.7 bits (104), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C++G+ EA+ +E++ GL+ Y ++ + R G ++ +++ +M++
Sbjct: 308 ALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKAS 367
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R DT+ N++L + L + G+ + +Y +LN+
Sbjct: 368 RCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNA 417
>gi|357499035|ref|XP_003619806.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355494821|gb|AES76024.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 302
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 58/109 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+GLC+ EA NL +E+ +K + P Y +I G + G + D+ +++ M G
Sbjct: 1 MINGLCKNKMVDEAVNLFKELHLKNMAPDIVAYSSLIDGLCKSGKISDVWDLIDDMHDRG 60
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D + +L + ++++ + + L+K+KD GI + TY +++
Sbjct: 61 QQADIIIYTSLLDALFKNHQVDKAIALLKKIKDRGIEPDMFTYTMLVDG 109
Score = 45.1 bits (105), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 72/159 (45%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
++ Y +LID CK D DD + R Q + +Y S++ L + Q
Sbjct: 30 IVAYSSLIDGLCKSGKISDVWDLIDDMHDRGQQ---ADIIIYT------SLLDALFKNHQ 80
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A L+++++ +G+EP F Y ++ G + G L+D + + + G + N+
Sbjct: 81 VDKAIALLKKIKDRGIEPDMFTYTMLVDGLCKNGRLKDAQEVYRDLMVKGYHFNACMHNV 140
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ + L +M+D+G V TY +++ +
Sbjct: 141 MINGLCKEGLFDEALFVLSEMEDNGCTPDVVTYKTLIRA 179
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 21/96 (21%), Positives = 50/96 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ G+ +A+ + ++ VKG + + +I G + GL ++ ++++ME +G
Sbjct: 106 LVDGLCKNGRLKDAQEVYRDLMVKGYHFNACMHNVMINGLCKEGLFDEALFVLSEMEDNG 165
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D V ++ + ++ + V L++M G+
Sbjct: 166 CTPDVVTYKTLIRALFKNDMNDKAVKLLREMLSRGL 201
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
++A + G+ + AE L+ + + G + LV F ++++ CK D+++ FD+
Sbjct: 231 LVAAFFRAGEVDGAERLV--GMMREGGLKPNLVTFN-SMVNGMCKAGKMEDARKVFDEM- 286
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ + + Y +++ G C+ G HEA ++ EM KG+ P + +I+
Sbjct: 287 --VREGLAPDGVSY------NTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIH 338
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+ G LE +V QM G +++ V ++ + L +L ++ MK I
Sbjct: 339 VMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKP 398
Query: 293 SVRTYNSVLNS 303
SV YN+++N
Sbjct: 399 SVVCYNALING 409
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 88/199 (44%), Gaps = 18/199 (9%)
Query: 111 PKLVA--EIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
P LV ++ + K G+ E+A + ++ E L+ G LV YC + C H++
Sbjct: 258 PNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCK---AGCSHEA 314
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+A + Q + S+I +C+ G A L+ +MR +GL+ +
Sbjct: 315 L----SVFAEMTQ-----KGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNE 365
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ +I G+ + G L+D V M+ + VC N +++ Y + L +
Sbjct: 366 VTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHE 425
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M+ G+ V TY++++++
Sbjct: 426 MEAKGLKPDVVTYSTIISA 444
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 51/109 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++ G+ AE L+ MR GL+P+ + ++ G + G +ED ++ ++M +
Sbjct: 230 TLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVRE 289
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G D V N ++ Y + +M GI V T+ S+++
Sbjct: 290 GLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIH 338
Score = 41.6 bits (96), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC G EA +++ +MR G P+ Y ++ + R G ++ ER+V M G
Sbjct: 196 LVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGG 255
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V N +++ ++ +M G+ +YN+++
Sbjct: 256 LKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGG 304
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 82/182 (45%), Gaps = 12/182 (6%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSS 183
G+ +EA L+ E +K + V+ Y +I ++CK+ D+ F+ L + V +
Sbjct: 414 GRMDEARELLHEMEAK---GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDA 470
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
Y S+I LC + +A L + M GL+P F Y +I G+ + G +E
Sbjct: 471 ITY------SSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESA 524
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYG-DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ ++M G D V +++++ + L + + IP + + Y+++++
Sbjct: 525 LSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDPIPANTK-YDALMH 583
Query: 303 SC 304
C
Sbjct: 584 CC 585
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV 149
++S Y +I E Q N + +I L K G +AE++I + S +
Sbjct: 208 MTSTVMDRYHQILREG-LQPNLLIYNSVINALCKDGNVRDAESIINKVFK---SGMKPDT 263
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y ++I +C++ R D + N++ ++I+GLC G+ +EA
Sbjct: 264 FTYTSMILGYCRN---RDLDSAFEIFNRM--DEEGCEPNAATYSTLINGLCNSGRVNEAL 318
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ I EM G+ P+ + I +G +ED +I M+ G + + ++S
Sbjct: 319 DFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG- 377
Query: 270 GDHNELSRMVLWL-QKMKDSGIPFSVRTYNSVLN 302
+SRM + L +M G+ + TYN+++N
Sbjct: 378 ---QRVSRMAIGLFHRMSRDGVVPNTVTYNALMN 408
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 128/297 (43%), Gaps = 42/297 (14%)
Query: 21 RQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHL 80
R + LT + A LTK R LS LA + S L++ F+A +
Sbjct: 66 RPEELTQPRPRKATLTK---RALSCLA----QPDWQRSTLLASLTPEKAAFVA----ARC 114
Query: 81 LSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFL----DKQGQREEAETLILE 136
L P + +L F L++ + E ++ P A++ L D+ A +++
Sbjct: 115 LVP------VRALEFLLFL--SREHSHKYGPDTFAKVAMRLLESRDRPAAVGRARIHMIK 166
Query: 137 TLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL--VNSSSSVY-----VKR 189
+ S + L N +D F + K G L QL +N +S+V + R
Sbjct: 167 SCSNKAEMTQAL-----NYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILR 221
Query: 190 QALK-------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ L+ S+I+ LC+ G +AE++I ++ G++P F Y +I GY R L+
Sbjct: 222 EGLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDS 281
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
I N+M+ +G + + +++ + ++ + ++ +M G+ +V T+ +
Sbjct: 282 AFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTA 338
Score = 51.6 bits (122), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G A ++E M+ G +P + Y +I G+ ++ +E + N+M G
Sbjct: 476 IIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRG 535
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ V ++S Y +L L++MK SG +V+TYN +++ +
Sbjct: 536 LCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLT--------- 586
Query: 315 NSNDFPLSILELTEVLNEEEVS 336
N+F EL +V+ EE++S
Sbjct: 587 KQNNFS-GAEELCKVMLEEKIS 607
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G E+A +++ L R ++ Y +I +C DS G D R+ +L+ ++
Sbjct: 449 GDTEKAMSMLTNMLK---GRPTPTLVTYNIIIKGYC--DS--GDTDVAIRVLELM-KANG 500
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ +ISG C++ + A + EM +GL P+ Y +I GY + L+
Sbjct: 501 CQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAA 560
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R++ +M+ G R + N+++ N S + M + I V TY++V+N
Sbjct: 561 RMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVING 619
>gi|356517665|ref|XP_003527507.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20300,
mitochondrial-like [Glycine max]
Length = 564
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 91/211 (43%), Gaps = 15/211 (7%)
Query: 107 FQWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ P +VA +I+ L K+ + EA++ L R V+ Y +L+ +C+
Sbjct: 242 YGCTPDMVAFSIVISSLCKKRRANEAQSF----FDSLKHRFEPDVVVYTSLVHGWCRAGD 297
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
++ ++ + ++ +VY +I LC GQ A ++ EM G +P+
Sbjct: 298 ISKAEEVFSDM-KMAGIKPNVYT----YSIVIDSLCRCGQITRAHDVFSEMIDAGCDPNA 352
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ ++ + + G E + ++ NQM+ G DT+ N ++ S+ L L
Sbjct: 353 VTFNSLMRVHVKAGRTEKVLKVYNQMKRLGCPADTISYNFIIESHCRDENLEEAAKILNL 412
Query: 285 MKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315
M G+ + T+N + ++ L D+N
Sbjct: 413 MVKKGVAPNASTFNFIFGC----IAKLHDVN 439
>gi|125541439|gb|EAY87834.1| hypothetical protein OsI_09254 [Oryza sativa Indica Group]
Length = 502
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 105/230 (45%), Gaps = 24/230 (10%)
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
+L+ +A L + G AE+++++ + +LG V+ Y L+ + C+ G +
Sbjct: 13 RLLNVCLAALCRGGSLAAAESVLVDAI-RLGLPPD--VVTYNTLLAAHCR---AAGLEAG 66
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
A + ++ + V S+I+G G P A +L +EM G+ P + Y ++
Sbjct: 67 LAVMGRM--REAGVEPDAVTYNSLIAGAARRGLPIHALDLFDEMLRAGIAPDSWSYNPLM 124
Query: 232 YGYGRLGLLEDMERIVNQMESDG-----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ R G ED R+ M G T +T+ M + Y RM +LQ+
Sbjct: 125 HCLFRSGHPEDAYRVFADMAEKGIAPCDTTYNTLLDGMFRAGYA--MNAYRMFRYLQR-- 180
Query: 287 DSGIPFSVRTYNSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVL 330
+G+P S+ TYN+++N CS+ +L++L D +I+ T V+
Sbjct: 181 -AGLPVSIVTYNTMINGLCSSGKVGYARMVLRELGRTDHAPNIITYTAVM 229
>gi|357122970|ref|XP_003563186.1| PREDICTED: pentatricopeptide repeat-containing protein At5g42310,
mitochondrial-like [Brachypodium distachyon]
Length = 675
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 88/192 (45%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + K S + +
Sbjct: 273 VTALISALGGAGRVAEAEALFLEFFLAGEIKPRTRA----YNALLKGYVKIGSLKNAEQV 328
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
L+++ S V ++ G+ A L++EM G++PS + + I+
Sbjct: 329 ---LDEM--SDCGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 383
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M + G + D N+++ ++G +N L + +M++ GI
Sbjct: 384 AGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDAFNRMREEGIE 443
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 444 PDVVTWNTLIDA 455
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA IE M+ GL+PS Y ++ Y + GL + +V M +DG TV
Sbjct: 530 GRFKEAIECIEVMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 589
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
N +++++G+ + LQ MK++ + V TY +++ + I
Sbjct: 590 NSLMNAFGEDRRVVEAFSVLQFMKENDLRPDVITYTTLMKALIRI 634
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM G++P Y +I +G+
Sbjct: 372 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYN 425
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L N+M +G D V N ++ ++ R + ++M++S P TYN
Sbjct: 426 CLGHAMDAFNRMREEGIEPDVVTWNTLIDAHRKGGRHDRAMELFEEMRESNCPPGTTTYN 485
Query: 299 SVLN 302
++N
Sbjct: 486 IMIN 489
Score = 45.4 bits (106), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 6/143 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ L E + E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG
Sbjct: 487 MINLLGEQERWVGVETMLSEMKEQGLVPNIITYTTLVDVYGRSGRFKEAIECIEVMKADG 546
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIM 308
+ + ++++Y + ++ M+ G+ S NS++N+
Sbjct: 547 LKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLMNAFGEDRRVVEAF 606
Query: 309 SMLQDLNSNDFPLSILELTEVLN 331
S+LQ + ND ++ T ++
Sbjct: 607 SVLQFMKENDLRPDVITYTTLMK 629
>gi|255686014|gb|ACU28496.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 119
Score = 56.2 bits (134), Expect = 3e-05, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 4 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 63
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 64 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 117
Score = 43.9 bits (102), Expect = 0.13, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 35 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 94
Query: 250 MESDGTRVDTVCSNMVLS 267
M +G D N +L+
Sbjct: 95 MMDNGVDPDVYTYNSLLN 112
>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Glycine max]
Length = 687
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G CE GQ EA L EEM +G P+ Y I+YG + G + D ++++ M +
Sbjct: 278 LIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKN 337
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++ Y + L +++ + SV TYN++++
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDG 386
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
I GL ++G EA L+++M GL P Y II+ + G L + +M S G
Sbjct: 488 FIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKG 547
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
V +++ SY L +L +M + G+ +V TYN+++N + M Q
Sbjct: 548 IFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAY 607
Query: 315 N 315
N
Sbjct: 608 N 608
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 68/159 (42%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V + + FCK +K FD+ LN+ + Y+ R I G ++G
Sbjct: 412 VFTFTTFVRGFCKMGNLPMAKELFDEM---LNRGLQPDRFAYITR------IVGELKLGD 462
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
P +A + EEM +G P Y I G +LG L++ +V +M +G D V
Sbjct: 463 PSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTS 522
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ ++ L + +M GI SV TY +++S
Sbjct: 523 IIHAHLMAGHLRKARALFLEMLSKGIFPSVVTYTVLIHS 561
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 69/153 (45%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++DSFCK + ++ + S + V +++GL G+ +A
Sbjct: 202 VVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDV-----TYNVLVNGLSHSGEMEQA 256
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ LI++M GLE S + Y +I GY G +E+ R+ +M S G V N ++
Sbjct: 257 KELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYG 316
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+S L M + + + +YN+++
Sbjct: 317 LCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLI 349
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180
L G+ E+A+ LI + L +LG V Y LI +C+ +G + +RL + +
Sbjct: 247 LSHSGEMEQAKELIQDML-RLGLEVS--VYTYDPLIRGYCE----KGQIEEASRLGEEML 299
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
S +V +++ GLC+ G+ +A L++ M K L P Y +IYGY RLG
Sbjct: 300 SRGAV-PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLG 356
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 13/195 (6%)
Query: 65 VASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQ 124
+ SP + N L + LS + L + E S + ++P +I ++
Sbjct: 231 MGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDP-----LIRGYCEK 285
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
GQ EEA L E LS+ V+ Y ++ CK D L+ +VN +
Sbjct: 286 GQIEEASRLGEEMLSRGAV---PTVVTYNTIMYGLCKWGR---VSDARKLLDVMVNKN-- 337
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + ++I G +G EA L E+R + L PS Y +I G RLG L+
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397
Query: 245 RIVNQMESDGTRVDT 259
R+ ++M G D
Sbjct: 398 RLKDEMIKHGPDPDV 412
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC+ G+ +A+ EM KGL+P Y I+ + R G + +++ ME
Sbjct: 529 TIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKR 588
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G N ++ G N++ + + +M++ G+ V TYN +LN
Sbjct: 589 GCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLN 637
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G +A L ++M +G EP+ F + ++ GY R GL ++ QM + G
Sbjct: 153 LIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGLELLGQMRTMG 212
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
+ V N ++SS+ + + KM++ G+ V T+NS
Sbjct: 213 ILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 78/162 (48%), Gaps = 17/162 (10%)
Query: 150 LFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
+ Y LI SFCK HD+++ D R + LV + S IS LC G+
Sbjct: 218 VLYNTLISSFCKEGKTHDAEKLVDKM--REDGLVPHV-------ETFNSRISALCGSGKI 268
Query: 206 HEAENLIEEMRVK---GL-EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
EA + +M++ GL P+ YK ++ G+ + G+LE+ + +V+ M+ + ++
Sbjct: 269 LEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLES 328
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+ L + +L + L++M GI + +YN V++
Sbjct: 329 YNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDG 370
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 49/96 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G C G+ EA NL+ EM P+ + +++ + G + + E ++ +M
Sbjct: 401 TLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEK 460
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
G VDTV N+++++ ++ +L + + + M G
Sbjct: 461 GYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHG 496
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ G +A L+ M G+ P Y +++GY G + + ++++M S+
Sbjct: 367 VMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNN 426
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+T N++L S +S LQKM + G T N ++N+
Sbjct: 427 CSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINA 475
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/237 (21%), Positives = 101/237 (42%), Gaps = 34/237 (14%)
Query: 149 VLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
V+ Y ++ FCK + + DT R ++ ++ ++ + GL G+
Sbjct: 291 VITYKLMLMGFCKEGMLEEAKTLVDTMKR--------NANFINLESYNIWLLGLIRNGKL 342
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA +++EM G+EP + Y ++ G + G+L D ++ M +G DTV + +
Sbjct: 343 LEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTL 402
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF 319
L Y ++ L +M + + T N +L+S S ++LQ +N +
Sbjct: 403 LHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGY 462
Query: 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAMK-----WDSGETKLDLHGMHLGSAY 371
+ + ++N L ++ LD+A++ W G L +LG+++
Sbjct: 463 GVDTVTCNIIIN--------ALCNNGQLDKAIEIVNGMWTHGSAALG----NLGNSF 507
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 10/146 (6%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV + II+ L K G+ ++A+ +E +SK G + + Y I SFC+
Sbjct: 522 PDLVTYSTIISGLCKAGRLDDAKKKFIEMMSK-GLQPDSAI--YDTFIHSFCREGK---I 575
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ L + + + Q S+I GL Q E LI+EMR KG+ P Y
Sbjct: 576 SSAFQVLKDMEKRGCNKTL--QTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYN 633
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDG 254
++ G + D ++++M G
Sbjct: 634 HMLNCLCEGGRINDAPSVLDEMLQKG 659
>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 908
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ EEAE L+ +++ G ++ Y LID F + + D + N
Sbjct: 371 MINSLCKTGKLEEAE-LLFSVMAERGLNPNDVT--YTILIDGFGR---RAKLDVAFYYFN 424
Query: 177 QLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+++ S++VY + SMI+ C+ G+ AE L +EM KGL+P+ Y +I GY
Sbjct: 425 KMIECGISATVY----SYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGY 480
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ GL+ ++ ++M G +TV ++ N+++ +M + I +
Sbjct: 481 CKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNE 540
Query: 295 RTYNSVL 301
TYN ++
Sbjct: 541 VTYNVLI 547
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA-LKSMISGLCEMGQPHEAEN 210
YC L+ C+ F+ +++++ YV +A + +I GL +MG A
Sbjct: 298 YCTLVLGLCRIQE---FEVGMEMMDEMIELG---YVPSEAAVSGLIEGLIKMGSIEGAFE 351
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L+ ++ G+ P+ F Y +I + G LE+ E + + M G + V +++ +G
Sbjct: 352 LLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFG 411
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+L + KM + GI +V +YNS++N
Sbjct: 412 RRAKLDVAFYYFNKMIECGISATVYSYNSMIN 443
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+ LC+ G+ EAE L M +GL P+ Y +I G+GR L+ N+M
Sbjct: 370 SMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIEC 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G N +++ ++ L ++M D G+ +V TY S+++
Sbjct: 430 GISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISG 479
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G A L++EM KGL P + Y+ +I G G + + + +N +
Sbjct: 546 LIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKH 605
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R+D +C +L + + ++ Q+M G+ + +Y +++ L
Sbjct: 606 QRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGA---------L 656
Query: 315 NSND 318
N ND
Sbjct: 657 NQND 660
Score = 41.2 bits (95), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C++G+ EA L++ M G+ P Y IY Y + G ++ + M G
Sbjct: 789 LIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRG 848
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ D V N ++ + + EL R + M G+ + TY+S++
Sbjct: 849 LKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 8/153 (5%)
Query: 150 LFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y LID F K + K+ F+ Y + + +S Y ++++GL + G +EA
Sbjct: 680 VIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYT------ALVNGLFKAGYVNEA 733
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L + M V P+ Y C + + G +E+ ++ N M G+ +TV N+++
Sbjct: 734 KLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAM-LQGSFANTVTYNILIRG 792
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
Y + L M G+ TY++ +
Sbjct: 793 YCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFI 825
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+ISG C+ G +A L EM KG+ P+ + +I G ++ + + ++ ++M
Sbjct: 475 SLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVEL 534
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ V N+++ + +R L +M G+ TY ++ CST
Sbjct: 535 KILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCST 588
>gi|224114223|ref|XP_002316701.1| predicted protein [Populus trichocarpa]
gi|222859766|gb|EEE97313.1| predicted protein [Populus trichocarpa]
Length = 386
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I CEMG A +L++EM+ KGLEP + +++G+ G D ERI QM+
Sbjct: 175 TVIKAFCEMGSLDSAVSLLDEMKRKGLEPDLITFNTLLHGFYAKGRFVDGERIWEQMKEK 234
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D N L + +V +++MK GI +Y++++
Sbjct: 235 NVEPDVRSYNAKLLGLTLEKRMEDVVKVVEEMKSEGIQLDTFSYSALI 282
>gi|299116347|emb|CBN76149.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S I+ G+ +A LI EMR KGL+P + Y I+ + G E+ R++ ME+
Sbjct: 624 SAIAACASGGESKKASQLIGEMRRKGLKPDRYSYTSAIHACSKAGNPEEALRLLRAMEAS 683
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D + + + + S + L +M+ G+ + RTY + + +C
Sbjct: 684 NVVPDVIAMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACG 735
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 14/125 (11%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG----LLEDMERI 246
A+ + + L G+ EA +++EMR KG+ P+ YK I GR G LE + R+
Sbjct: 691 AMTACMDALAAGGKWSEAITILDEMRSKGVTPNERTYKAAIQACGRGGQWQRALELLSRL 750
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK--DSGI---PFSVRTYNSVL 301
N+ S T + C+ M + G E R + L++MK G+ P V TY S +
Sbjct: 751 ENRA-SGATVQEYNCAMMACVTGG---ESGRALALLEQMKANKGGVNAGPDMV-TYTSAI 805
Query: 302 NSCST 306
+CS+
Sbjct: 806 MACSS 810
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +LI+ FC HD
Sbjct: 250 KINPNLVTFNALIDAFV-KEGKFVEAEKLHDDMIKRSIDPD---IFTYNSLINGFCMHDR 305
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 306 ---LDKAKQMFEFMV--SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 421 MQKSEIKLDIYIYTTMI 437
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 51 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 110
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R DT+ ++ HN+ S V + +M G ++ TY V+N
Sbjct: 111 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 42/287 (14%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNAL 77
C R+ +++L L ++ K G S + L+ + + IS VA Q + +
Sbjct: 54 CFCRRSQISLALALLGKMMKLGYE-PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG-- 110
Query: 78 SHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILET 137
PDT ++L L++ +E +A +D+ QR L+
Sbjct: 111 ---YRPDTI--TFTTLIHGLFLH-----------NKASEAVALVDRMVQRGCQPNLVT-- 152
Query: 138 LSKLGSRERELVLFYCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMI 196
Y +++ CK RG D + LN++ ++ + ++I
Sbjct: 153 --------------YGVVVNGLCK----RGDIDLAFNLLNKM--EAAKIEADVVIFNTII 192
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
LC+ +A NL +EM KG+ P+ Y +I G D ++++ M
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ + M I + TYNS++N
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G+C+ G+ + +L + +KG++P+ Y +I G LL++ ++ +M+ D
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 494
Query: 254 GTRVDTVCSNMVLSSY 269
G D+ N ++ ++
Sbjct: 495 GPLPDSGTYNTLIRAH 510
>gi|414884149|tpg|DAA60163.1| TPA: hypothetical protein ZEAMMB73_830458 [Zea mays]
Length = 378
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 62/114 (54%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +++ G C+ G+ +A +EEM+VK + P+ Y II G ++ L++ + +
Sbjct: 95 RAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKIDRLDEAYMLFEE 154
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S G ++ + + ++ +G + L L++M G+ +V T+NS++++
Sbjct: 155 AKSKGIELNVIVYSSLIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDA 208
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVL---FYCNLIDSFCKHDSKRGFDDTYA 173
+I L K GQ E ++ ++R L Y ++D FCK D Y
Sbjct: 65 LIHGLTKAGQARETSSIFHAM------KQRGFALDARAYNAVVDGFCKSGK---VDKAYE 115
Query: 174 RLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
L ++ V + + Y S+I GL ++ + EA L EE + KG+E + Y
Sbjct: 116 ALEEMKVKHVPPTVATY------GSIIDGLAKIDRLDEAYMLFEEAKSKGIELNVIVYSS 169
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I G+G++G +++ I+ +M G + N ++ + E++ ++ Q MK+
Sbjct: 170 LIDGFGKVGRIDEAYLILEEMMKKGLAPNVYTWNSLMDALVKAEEINEALICFQSMKEMK 229
Query: 290 IPFSVRTYNSVLNS 303
+ TY+ ++N
Sbjct: 230 CSPNTYTYSILING 243
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L + + + + G + + E+++ G P Y +I+G + G + I + M+
Sbjct: 27 LNTYMDCVFKAGDVEKGRAIFEDIKGYGFLPDVRSYSILIHGLTKAGQARETSSIFHAMK 86
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G +D N V+ + ++ + L++MK +P +V TY S+++ + I
Sbjct: 87 QRGFALDARAYNAVVDGFCKSGKVDKAYEALEEMKVKHVPPTVATYGSIIDGLAKI 142
>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09820-like [Glycine max]
Length = 583
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 56/106 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G+P +AE L+ EM G++P+ Y ++ GY G L+ ++ QME +G
Sbjct: 454 LIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEG 513
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R + V N+++ + +L L +M + G+ + TY+ V
Sbjct: 514 KRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 94/199 (47%), Gaps = 18/199 (9%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DS 164
P +V +I L G+ +EA L + + LG + ++ + LI+ FCK ++
Sbjct: 306 PNIVTYNSLINGLSNNGKLDEAIAL-WDKMVGLGLKPN--IVTFNALINGFCKKKMIKEA 362
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
++ FDD + LV ++ + +MI C+ G E L M +G+ P+
Sbjct: 363 RKLFDDIAEQ--DLVPNAIT-------FNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNV 413
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y C+I G R + ++++N+ME+ + D V N+++ + E S+ L +
Sbjct: 414 STYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGE 473
Query: 285 MKDSGIPFSVRTYNSVLNS 303
M + G+ + TYN++++
Sbjct: 474 MLNVGVKPNHVTYNTLMDG 492
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER---IVNQME 251
I+GLC+ G+ ++AE++IE+++ G P+ Y +I G+ + G M R I+ +M
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML 265
Query: 252 SDGTRVDTVCSNMVLSSY-GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++ + + N ++ + D N L+ + ++M+ G+ ++ TYNS++N S
Sbjct: 266 ANKICPNEITFNTLIDGFCKDENVLAAKNAF-EEMQRQGLKPNIVTYNSLINGLSN 320
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 5/153 (3%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
I L K G+ +AE +I E + G ++ Y LID CK S A L
Sbjct: 206 FINGLCKAGKLNKAEDVI-EDIKAWGFSPN--IVTYNTLIDGHCKKGSAGKMYRADAILK 262
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+++ ++ + ++I G C+ A+N EEM+ +GL+P+ Y +I G
Sbjct: 263 EML--ANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSN 320
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
G L++ + ++M G + + V N +++ +
Sbjct: 321 NGKLDEAIALWDKMVGLGLKPNIVTFNALINGF 353
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 19/157 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK-------SMISGLCEMGQ 204
+ LID FCK + N L ++ ++RQ LK S+I+GL G+
Sbjct: 276 FNTLIDGFCKDE------------NVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGK 323
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA L ++M GL+P+ + +I G+ + ++++ ++ + + + + N
Sbjct: 324 LDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ ++ + M D GI +V TYN ++
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLI 420
>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
Length = 538
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+E + ++G R E+ Y NL+ F +H G D R + + ++ A
Sbjct: 215 FMEEMRQMGVRPNEVT--YSNLVHGFRQH----GELDRVIRFFEEEKARKGGSLEAAAYP 268
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ LC+ G A +EE+R G+ P Y +I + R G + ++ M +
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V + +++ + L+ M+ +G P +V TYNSV++
Sbjct: 329 GVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDG 378
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC+ + +A +EEMR G+ P+ Y +++G+ + G +++R++ E +
Sbjct: 198 TIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHG---ELDRVIRFFEEE 254
Query: 254 GTRVDTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI-- 307
R Y D L R +++++ SG+ V TY+ ++N+ +
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314
Query: 308 ----MSMLQDLNSNDFPLSILELTEVLN 331
+ +L+D+ N ++ + ++N
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLIN 342
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
LE + +L V Y +I C+ D Y L ++V S V +
Sbjct: 74 LELVRELSGVYTPTVFIYNGIITGLCRASR---VMDAYKVLEKMVEESIVPNVFTYTI-- 128
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC + A + +EM+ G +P+ Y +I R G +++ R++ + S
Sbjct: 129 LLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLE 188
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + ++ + L + ++++M+ G+ + TY+++++
Sbjct: 189 LPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHG 237
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK +R F D + RL +L+ ++ S S++ GLC+ G+ E
Sbjct: 334 VVTYSTLINVLCK---ERKFQDAF-RLLELMEAAGSP-PNVVTYNSVMDGLCKSGKMDEV 388
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ E M P Y I+ G + G+L+ ++ ++S D +MV++S
Sbjct: 389 HRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITS 448
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL-EPSGFEYKCIIY 232
RL L+ S VY K ++ GLC G ++A L+ E+ G+ P+ F Y II
Sbjct: 40 RLFTLLASRGVVY-GETTYKLVVDGLCGAGMANQALELVREL--SGVYTPTVFIYNGIIT 96
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G R + D +++ +M + + ++L+ N+ Q+MK +G
Sbjct: 97 GLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKP 156
Query: 293 SVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+ TY +++ S + ++ + S + P ++ T ++V L +S
Sbjct: 157 NPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCT--------TIVGGLCKASR 208
Query: 347 LDEAMKW 353
LD+A+K+
Sbjct: 209 LDDALKF 215
>gi|255684956|gb|ACU27967.1| At1g03560-like protein [Arabidopsis thaliana]
gi|255684958|gb|ACU27968.1| At1g03560-like protein [Arabidopsis thaliana]
Length = 193
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LI + K S +D L+++++ V ++
Sbjct: 1 VFENMIRKGSKPN--VAIYTVLIYGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 54
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + R GL + Y +I G G+ G +++ ER+ +M
Sbjct: 55 -VVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEK 113
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ ++ H ++ + ++M ++ G +V TY +++
Sbjct: 114 GCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILISG 164
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y L++ FCK +G+ + +L + Y+K + +I +C+ G + A
Sbjct: 444 YSVLLEGFCK----QGY---LGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHAR 496
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L E+ V GL+P Y II G + GLL++ +ME DG + N+++ +
Sbjct: 497 KLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGF 556
Query: 270 GDHNELSRMVLWLQKMKDSGI 290
H + SR V + +M+D G
Sbjct: 557 LQHKDESRAVQLIGEMRDKGF 577
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C + + EA+ L EM +GL P+ Y +I+ + +LG L + + M ++G
Sbjct: 377 LINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNG 436
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D +++L + L + + M+ + + ++ Y +++S
Sbjct: 437 YLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDS 485
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 87/218 (39%), Gaps = 50/218 (22%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKR 189
+L + KLG + ++ + LI+ CK + FDD AR Q VY
Sbjct: 148 VLAKVIKLGLQPT--IITFTTLINGLCKAGEFAQALELFDDMVARGCQ-----PDVY--- 197
Query: 190 QALKSMISGLCEMGQPHEAENLIEEM---------------------------------- 215
++I+GLC+MG+ A LI++M
Sbjct: 198 -TYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSY 256
Query: 216 -RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ KG+ P+ Y +I G ++ ++N+M S D V ++++ +
Sbjct: 257 MKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGN 316
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ L+ M + G+ +V TYNS+++ S M +++
Sbjct: 317 VLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVE 354
>gi|6721172|gb|AAF26800.1|AC016829_24 hypothetical protein [Arabidopsis thaliana]
Length = 572
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLC 200
G R V+ Y +I +C+ F Y L+++ N S + +++S L
Sbjct: 316 GHGFRPCVISYTTIIRCYCQQFE---FIKVYEMLSEMEANGSPPNSI---TYTTIMSSLN 369
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMESDGTRVDT 259
+ EA + M+ G +P Y C+I+ R G LE+ ER+ +M G ++T
Sbjct: 370 AQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINT 429
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI--PFSVRTYNSVLNSC 304
N +++ Y H+E + + L++M+ S + P V TY +L SC
Sbjct: 430 STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNP-DVHTYQPLLRSC 475
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
VA+I+ G+ EEA I + L + G + + L+D+ CK ++ +
Sbjct: 222 VAKIMRRFAGAGEWEEA-VGIFDRLGEFGLEKNTESMNL--LLDTLCK---EKRVEQARV 275
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L QL S + I G C+ + EA I+EM+ G P Y II
Sbjct: 276 VLLQL---KSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC 332
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + + ++++ME++G+ +++ ++SS E + +MK SG
Sbjct: 333 YCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPD 392
Query: 294 VRTYNSVLNS 303
YN ++++
Sbjct: 393 SLFYNCLIHT 402
>gi|302775192|ref|XP_002971013.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
gi|300160995|gb|EFJ27611.1| hypothetical protein SELMODRAFT_63047 [Selaginella moellendorffii]
Length = 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 74 LNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETL 133
+ ALSH+ ++ H S L ++ +N L A +G + E
Sbjct: 69 MRALSHVQGWESAHRMFSELVVHGSLK---PDVAMYNTMLAAY------GRGHKLERVLQ 119
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQAL 192
E + K G E V YC L+ +F + + D YAR+N Q + ++ +Y
Sbjct: 120 TWERMQKEGCVEN--VGTYCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIY------ 171
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+ ++ G+ A +EM G +P+ Y ++ G+ G E + ++ +M++
Sbjct: 172 RGLVCVCATQGRWLVALTFFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKA 231
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
G D N VL+ E R +L+ +K SG+ YN +L +C
Sbjct: 232 SGVAPDFYTVNAVLNGLIAAREFDRAMLFFHSVKSSGMKLDREVYNVILVAC 283
>gi|302757297|ref|XP_002962072.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
gi|300170731|gb|EFJ37332.1| hypothetical protein SELMODRAFT_63596 [Selaginella moellendorffii]
Length = 413
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 7/154 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC L+ +F + + D YAR+N Q + ++ +Y + ++ G+ A
Sbjct: 136 YCLLVSTFVQTNQADLALDAYARMNSQGLKATDGIY------RGLVCVCATQGRWLVALT 189
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+EM G +P+ Y ++ G+ G E + ++ +M++ G D N VL+
Sbjct: 190 FFKEMLESGCKPTIVTYNVLMRALGKAGKWEIVLDLLPRMKASGVAPDFYTVNAVLNGLI 249
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
E R +L+ +K SG+ YN +L +C
Sbjct: 250 AAREFDRAMLFFHSVKSSGMKLDREVYNVILVAC 283
>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
Length = 1315
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI-VNQMES 252
SMISGLC+ G +A L+EEM G +P+ + + +I+G + G E R+ + + S
Sbjct: 906 SMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRS 965
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D + + ++S Y +LSR + ++MK+ G+ + TY ++++
Sbjct: 966 DNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 55/102 (53%)
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
EM A N+ +EM +G+ P YK II GY R G + + +R + +M G VD
Sbjct: 808 EMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNA 867
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++++++ + + ++R V + K+ G+ ++ Y+S+++
Sbjct: 868 TLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMIS 909
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 12/198 (6%)
Query: 71 FIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQRE 128
F+ NA L+ L + A + ++T+ +P L+ + +I+ L K+G +
Sbjct: 862 FVVDNATLTLIITAFCEKSLVNRAVWFFHKVTK---MGLSPNLINYSSMISGLCKRGSVK 918
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A L LE + K G + V + +LI CK +G+ + RL + S +
Sbjct: 919 QAFEL-LEEMVKNGWKPN--VYTHTSLIHGLCK----KGWTERAFRLFLKLIRSDNYKPN 971
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+MISG C+ + AE L E M+ +GL P+ Y +I G+ + G ++
Sbjct: 972 VHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELME 1031
Query: 249 QMESDGTRVDTVCSNMVL 266
M ++G +T N ++
Sbjct: 1032 LMSNEGFFPNTCTYNSIV 1049
>gi|357162631|ref|XP_003579471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Brachypodium distachyon]
Length = 544
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 32/211 (15%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDD-----------TYARLNQL 178
+L +S+LG R + Y +LI SFC+ D+ FD+ TYA + +
Sbjct: 151 VLLWMSRLGFRPNPID--YTDLIFSFCRAGRLPDALHLFDEMRALKYPLTPHTYAPILKA 208
Query: 179 VNSSSSVYVKRQALKSM---------------ISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+S + + SM I GLC++G E +IEE G P
Sbjct: 209 YCASGDIQAADALISSMRLSGCHPDVVIYNIYIHGLCKVGDFDAVERIIEESSRNGWVPD 268
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I G R G +ED R + M + G ++ V N++L G ++ L+
Sbjct: 269 AVTYSTFIAGLCRSGYVEDAFRQLEIMVAKGLQLTVVGLNILLDYAGQDLDMWVSKEVLE 328
Query: 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ ++ G V TYN+V++ M L+ L
Sbjct: 329 RCEELGFEVDVVTYNTVMDHFCKKMKWLRVL 359
>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
Length = 538
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+E + ++G R E+ Y NL+ F +H G D R + + ++ A
Sbjct: 215 FMEEMRQMGVRPNEVT--YSNLVHGFRQH----GELDRVIRFFEEEKARKGGSLEAAAYP 268
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ LC+ G A +EE+R G+ P Y +I + R G + ++ M +
Sbjct: 269 GYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRN 328
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V + +++ + L+ M+ +G P +V TYNSV++
Sbjct: 329 GVKPDVVTYSTLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDG 378
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 30/148 (20%), Positives = 70/148 (47%), Gaps = 13/148 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC+ + +A +EEMR G+ P+ Y +++G+ + G +++R++ E +
Sbjct: 198 TIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHG---ELDRVIRFFEEE 254
Query: 254 GTRVDTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI-- 307
R Y D L R +++++ SG+ V TY+ ++N+ +
Sbjct: 255 KARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQ 314
Query: 308 ----MSMLQDLNSNDFPLSILELTEVLN 331
+ +L+D+ N ++ + ++N
Sbjct: 315 FDASLELLEDMRRNGVKPDVVTYSTLIN 342
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK +R F D + RL +L+ ++ S S++ GLC+ G+ E
Sbjct: 334 VVTYSTLINVLCK---ERKFQDAF-RLLELMEAAGSP-PNVVTYNSVMDGLCKSGKMDEV 388
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ E M P Y I+ G + G+L+ ++ ++S D +MV++S
Sbjct: 389 HRVYEMMLKSRCSPDVVTYSIIMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITS 448
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194
LE + +L + Y +I C+ D Y L ++V S V +
Sbjct: 74 LELVRELSGVYTPTLFIYNGIITGLCRASR---VMDAYKVLEKMVEESIVPNVFTYTI-- 128
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC + A + +EM+ G +P+ Y +I R G +++ R++ + S
Sbjct: 129 LLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLE 188
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + ++ + L + ++++M+ G+ + TY+++++
Sbjct: 189 LPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHG 237
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL-EPSGFEYKCIIY 232
RL L+ S VY K ++ GLC G ++A L+ E+ G+ P+ F Y II
Sbjct: 40 RLFTLLASRGVVY-GETTYKLVVDGLCGAGMANQALELVREL--SGVYTPTLFIYNGIIT 96
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G R + D +++ +M + + ++L+ N+ Q+MK +G
Sbjct: 97 GLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSNKTKLAREVFQEMKRNGCKP 156
Query: 293 SVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+ TY +++ S + ++ + S + P ++ T ++V L +S
Sbjct: 157 NPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCT--------TIVGGLCKASR 208
Query: 347 LDEAMKW 353
LD+A+K+
Sbjct: 209 LDDALKF 215
>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
Length = 698
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 111 PKLVA--EIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
P LV ++ + K G+ E+A + ++ E L+ G LV YC + C H++
Sbjct: 225 PNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKV---GCSHEA 281
Query: 165 KRGFDDTYAR--LNQLVNSSSSVYVKRQA------------------------LKSMISG 198
F + + + +V +S ++V +A ++I G
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
C+ G +A + EMR ++PS Y +I GY +G +++ +V +ME+ G + D
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V + +LS+Y + + Q+M ++G+ TY+S++
Sbjct: 402 VVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLI 444
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 102/236 (43%), Gaps = 14/236 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
+P +A NA+ LS D + P + + + +N ++ L +G R
Sbjct: 120 APSVLAYNAVLLALS-DASLPSARRFFDSMLSDGVAPNVYTYNI-----LVRALCGRGHR 173
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+EA + +L + G + Y L+ +FC+ G D RL ++ +
Sbjct: 174 KEALS-VLRDMRGAGCDPNAVT--YNTLVAAFCRA----GEVDRAERLVDMMREGG-LKP 225
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
S+++G+C+ G+ +A + +EM +GL P G Y ++ GY ++G + +
Sbjct: 226 NLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVF 285
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M G D V ++ L R V +++M++ G+ + T+ ++++
Sbjct: 286 AEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 89/191 (46%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTY 172
++A + G+ + AE L+ + + G + LV F ++++ CK D+++ FD+
Sbjct: 198 LVAAFCRAGEVDRAERLV--DMMREGGLKPNLVTFN-SVVNGICKAGRMEDARKVFDEMV 254
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ + +++ G C++G HEA ++ EM KG+ P + +I+
Sbjct: 255 ---------KEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIH 305
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+ G LE +V +M G +++ + ++ + L +L +++M+ I
Sbjct: 306 VMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQP 365
Query: 293 SVRTYNSVLNS 303
SV YN+++N
Sbjct: 366 SVVCYNALING 376
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 24/195 (12%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVL---FYCNLIDSFCKHDSKRGF-DDTY 172
+I + K G E A L+ E RER L + + LID FCK +GF DD
Sbjct: 303 LIHVMCKAGNLERAVGLVREM------RERGLQMNEITFTALIDGFCK----KGFLDDAL 352
Query: 173 ARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ ++ + S Y ++I+G C +G+ EA L+ EM KG++P Y
Sbjct: 353 LAVREMRQCRIQPSVVCY------NALINGYCMVGRMDEARELVREMEAKGVKPDVVTYS 406
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
I+ Y + G ++ QM +G D + + ++ + L + + M
Sbjct: 407 TILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISL 466
Query: 289 GIPFSVRTYNSVLNS 303
G+ TY S+++
Sbjct: 467 GLQPDEVTYTSLIDG 481
>gi|224084978|ref|XP_002307458.1| predicted protein [Populus trichocarpa]
gi|222856907|gb|EEE94454.1| predicted protein [Populus trichocarpa]
Length = 440
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ LC+ G+ EA ++ EM +P+ F Y +++ YG +ED +ME++G
Sbjct: 200 MVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNG 259
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++ ++ N L + L +M G+ + RT+N +L+S
Sbjct: 260 IEPDVAVYNALIGAFCKANRLKNVYRVLNEMDCKGVTPNSRTFNIILSS 308
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 12/107 (11%)
Query: 152 YCNLIDSFCKHDS-KRGFDD-TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y +I FC+ D K+ Y +L + + S + V +I+GLCE G +A
Sbjct: 336 YTMMIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQV-------LINGLCEKGDVTQAC 388
Query: 210 NLIEEMRVKGLEPSGFEY---KCIIYGYGRLGLLEDMERIVNQMESD 253
L+EEM KG+ PSG + + ++ GR +L+ +++ +N + +D
Sbjct: 389 VLLEEMIEKGIRPSGVTFGRLRQLLIKEGREDVLKFLQKKINVLVND 435
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 64/152 (42%), Gaps = 6/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ L+ + CK + R + + + S Y ++ G + +A +
Sbjct: 128 FNGLLSALCKSKNVRKAQEIFDSIKDRFVPDSKTY------SILLEGWGKDPNLPKAREI 181
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EM G P Y ++ + G +++ IVN+M+S + ++++ +YG
Sbjct: 182 FREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYSVLVHTYGI 241
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N + V +M+++GI V YN+++ +
Sbjct: 242 ENRIEDAVSTFLEMENNGIEPDVAVYNALIGA 273
>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 606
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 11/191 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYA 173
A + A D +GQ E+A + +K+ + + LF CN L+ C ++ D+
Sbjct: 374 AILCALADAEGQVEKA----FQFRNKMVEKSFKPDLFTCNILLRGLC---TEGMLDNALK 426
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIY 232
N ++ ++ ++ISGLC+ G+ EA +L+ EM K GL P Y II
Sbjct: 427 LFNTWISKGKAI--DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIIL 484
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY R G +E + N+M + D N++L L + + G
Sbjct: 485 GYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAI 544
Query: 293 SVRTYNSVLNS 303
TYN++++
Sbjct: 545 DAVTYNTIISG 555
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 4/150 (2%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +I CK F++ + L ++ + + + ++I G C GQ +A
Sbjct: 443 YNTIISGLCKEGR---FEEAFDLLAEM-EEKNGLVPDQTTYNTIILGYCREGQVEKAFQF 498
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+M K +P F ++ G R G+L ++ N S G +D V N ++S
Sbjct: 499 RNKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCK 558
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
L +MK+ + TYN++L
Sbjct: 559 EGRFEEAFDLLAEMKEKKLGPDCYTYNAIL 588
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 76/183 (41%), Gaps = 11/183 (6%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
++GQ E+A + +K+ + + LF CN L+ C ++ D+ N ++
Sbjct: 276 REGQVEKA----FQFRNKMVEKSFKPDLFTCNILLRGLC---TEGMLDNALKLFNTWISK 328
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL-GLL 240
++ ++ISGLC+ G+ EA +L+ EM K L P + Y I+ G +
Sbjct: 329 GKAI--DAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQV 386
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E + N+M + D N++L L + G TYN++
Sbjct: 387 EKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTI 446
Query: 301 LNS 303
++
Sbjct: 447 ISG 449
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
LC G+ ++ + + E+ GL P Y II+GY R G +E + N+M + D
Sbjct: 239 LCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPD 298
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++L L + G TYN++++
Sbjct: 299 LFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISG 343
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
AF L + E++ + II ++GQ E+A + +K+ + + LF C
Sbjct: 459 AFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKA----FQFRNKMVEKSFKPDLFTC 514
Query: 154 N-LIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAEN 210
N L+ C+ + + +L N+ S + ++ISGLC+ G+ EA +
Sbjct: 515 NILLRGLCR-------EGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFD 567
Query: 211 LIEEMRVKGLEPSGFEYK---CIIYGYGRLGLLEDMERI 246
L+ EM+ K L P + Y C + GR+ E M +I
Sbjct: 568 LLAEMKEKKLGPDCYTYNAILCALADAGRMEAEEFMSKI 606
>gi|414868297|tpg|DAA46854.1| TPA: hypothetical protein ZEAMMB73_384018 [Zea mays]
Length = 504
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 114/256 (44%), Gaps = 28/256 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ LI ++C HDS G +T RL + + V +++ GLC+ G+ H+A +
Sbjct: 249 FNTLIAAYC-HDS--GGMETVLRLKERMEREGLV-PNEVTYNTIVHGLCKEGRMHQARRI 304
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EMRVKG+ P+ + +I+ Y LG E ++ +M G D V N ++ +
Sbjct: 305 VNEMRVKGVTPNTITFNTLIHSYVTLGDNEVAMKMHEEMMKAGLSADLVTYNALILGLCN 364
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNS-VLNSCST-----IMSMLQDL-----NSNDFP 320
+ + +Q++ + + + T+++ ++ C + +L + N +
Sbjct: 365 EGKTWKASQLVQELCAAKLEPNASTFSALIIGQCKKQNPERALDLLNAMKKAGFQPNYYT 424
Query: 321 LSILELTEVLN---EEEVSVVKEL------EDSSVLDEAMKWDSGETKL----DLHGMHL 367
SIL T N E + V+K++ D ++L E + S KL DL +
Sbjct: 425 YSILISTFSKNKDFEGAIDVLKDMLMRCIAPDKALLHEFFEGLSKAKKLHLAADLRSVAN 484
Query: 368 GSAYFIILQWMDEMRN 383
G+ + + + D+ RN
Sbjct: 485 GTRFISDIYYTDDYRN 500
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 133 LILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQL 178
+++ L K+G L LF Y LID+ C + L
Sbjct: 396 ILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGK-------LGKALDL 448
Query: 179 VNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ S R + ++I GLC+ + EAE + ++M ++G+ + + +I G +
Sbjct: 449 LKDMESTGCPRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCK 508
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++D ++NQM S+G + + + N +L+ Y ++ + L+ M +G V T
Sbjct: 509 DKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVT 568
Query: 297 YNSVLNS 303
Y +++N
Sbjct: 569 YGTLING 575
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 74/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ CK+ ++ LNQ+V+ + ++I+ LC + EA
Sbjct: 321 VFTYNIVVNCLCKNGQ---LEEAKGILNQMVDRGCLPDIT--TFNTLIAALCTGNRLEEA 375
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L ++ VKG+ P + + +I ++G R+ +M++ G D V N ++ +
Sbjct: 376 LDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDN 435
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+L + + L+ M+ +G P S TYN++++
Sbjct: 436 LCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 76/175 (43%), Gaps = 7/175 (4%)
Query: 132 TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+LE +S G E + L+ F + S AR+ ++ S++ V V
Sbjct: 201 VLMLEEMSSRGVAPDETT--FTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN--- 255
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+I+G C++G+ +A I++ G EP Y + G + + ++++ M
Sbjct: 256 --VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMV 313
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
+G D N+V++ + +L L +M D G + T+N+++ + T
Sbjct: 314 QEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCT 368
Score = 44.7 bits (104), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 5/149 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
LI+ +CK +D + Q + + + + ++GLC+ A +++
Sbjct: 257 LINGYCKLGR---VEDALGYIQQEI--ADGFEPDQITYNTFVNGLCQNDHVGHALKVMDV 311
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P F Y ++ + G LE+ + I+NQM G D N ++++ N
Sbjct: 312 MVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNR 371
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +++ G+ V T+N ++N+
Sbjct: 372 LEEALDLARQVTVKGVSPDVYTFNILINA 400
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 74/183 (40%), Gaps = 39/183 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L K+ + EEAE + + L R + F LID CK D K DD + +N
Sbjct: 467 IIDGLCKKMRIEEAEEVFDQM--DLQGISRNAITFN-TLIDGLCK-DKK--IDDAFGLIN 520
Query: 177 QLV-----------NSSSSVYVKRQALK----------------------SMISGLCEMG 203
Q++ NS + Y K+ +K ++I+GLC+ G
Sbjct: 521 QMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAG 580
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A ++ MR+KG+ P+ Y ++ R + D + +M G D +
Sbjct: 581 RTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYK 640
Query: 264 MVL 266
+V
Sbjct: 641 IVF 643
>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 861
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+R D+ + N L + R ++I G C+MG EA L EM KGL P+
Sbjct: 284 RRKNDEAFRVFNDL--KDRGYFPDRVMYTTVIKGFCDMGLLAEARKLWFEMIQKGLVPNE 341
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
+ Y +IYGY ++ + ++ + M G + V + ++S H + + +
Sbjct: 342 YTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLHGKTDEALSLFHE 401
Query: 285 MKDSGIPFSVRTYNSVL 301
M GI + +YNS++
Sbjct: 402 MSRKGIARDLISYNSLI 418
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 55/112 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S+I GLC+ G+ +A NL+ ++ ++GLEPS + +I ++G E R++ M
Sbjct: 413 SYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSFTPLIKCLCKVGDTEGAMRLLKDM 472
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ ++ + ++ + WL KM + +++T+ +++
Sbjct: 473 HDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKMLSWKLKPNMQTFEHLID 524
>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
Length = 727
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 81/188 (43%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II L G+ +EAE L + E + + Y ++D +CK + R + ++RL+
Sbjct: 494 IIEGLCMAGKVKEAEAF-------LNTLEDKCLENYSAMVDGYCKANFTRKAYELFSRLS 546
Query: 177 Q---LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ L + V + +I C G A+ + + + +G+ P Y +I G
Sbjct: 547 KQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMING 606
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y R+ L + I N M+ G + D + +VL + N L + +M G+
Sbjct: 607 YCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPD 666
Query: 294 VRTYNSVL 301
+ TY ++L
Sbjct: 667 IVTYTALL 674
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
+ Y ++D+ CK ++ LN++ S+ V ++I+G C G+ +A+
Sbjct: 384 VLYNIVVDALCKLGK---VEEAVELLNEMKGRRMSLDVVHYT--TLIAGYCLQGKLVDAK 438
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
N+ EEM+ +G+EP Y ++ G+ R GL ++ +++ + + G + ++ N ++
Sbjct: 439 NMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEG 497
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 24/148 (16%)
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
I+ C H KR D Y L L +++ + A ++I G C + EAE++ +M
Sbjct: 269 IEGLCSH--KRS-DLGYEALRAL--RAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDM 323
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P G+ Y +I+ Y + G L + N M S+G +
Sbjct: 324 VNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIK------------------- 364
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +V ++ +DSGI YN V+++
Sbjct: 365 TNLVDQFKEFRDSGIFLDEVLYNIVVDA 392
Score = 42.4 bits (98), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 54/120 (45%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S +++ ++ LC++G+ EA L+ EM+ + + Y +I GY G L
Sbjct: 376 DSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLV 435
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D + + +M+ G D V N+++ + + + L + G+ + T+N ++
Sbjct: 436 DAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRII 495
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LI+ FCK+D + D + V +V R +I C++G+ +
Sbjct: 366 LITYNALINGFCKNDMLKEALDMFGS----VKGQGAVPTTRM-YNMLIDAYCKLGKIDDG 420
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EEM +G+ P Y C+I G R G +E +++ +Q+ S G D V ++++
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTFHILMEG 479
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
Y E + + L++M G+ TYN V+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID F K D+ G + L+Q V + Y S+I+GLC G+ EA ++ +
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISY------NSLINGLCNGGKISEAISMRD 355
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M G++P+ Y +I G+ + +L++ + ++ G T NM++ +Y
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ ++M+ GI V TYN ++
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM---ERIVNQME 251
+I+ LC+ G+ ++A +++E+M+V G P+ Y +I GY +LG M + ++ +M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + N+++ + + L + ++M D + +V +YNS++N
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLING 340
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD- 253
++ G C G+ +A L++EM GL+P Y ++ GY + G L+ + QME +
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKER 535
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R++ N++L Y +L + L +M + G+ + TY V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 517
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 18/188 (9%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
S +VY + +++ C+ G+ +A + EEM G+ P+ Y +I GY R GLL
Sbjct: 213 SPNVYTRNMVMRA----FCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLN 268
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ N M + G + V N ++ + +L +MK + + TYN+++
Sbjct: 269 SAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLI 328
Query: 302 NSCSTIMS------MLQDLNSNDFPLSILELTEVL--------NEEEVSVVKELEDSSVL 347
N S + + + ++++ N IL ++ ++ +VKEL+ +++
Sbjct: 329 NGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLV 388
Query: 348 DEAMKWDS 355
A + +
Sbjct: 389 PNASTFSA 396
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 24/237 (10%)
Query: 61 ISKFVASSPQFIALNALSHLLSPDTTHPRLSSL----------AFPLYMRITEESWFQWN 110
+ KF ++ F+ + L + ++ + LSSL AF MR S +
Sbjct: 159 MKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYT 218
Query: 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170
+V K G+ E+A + E + +G + Y LI +C+ +G +
Sbjct: 219 RNMVMRAFC---KSGKLEKA-VQVFEEMESVGISPNDTS--YNTLIMGYCR----KGLLN 268
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+ +L + + V S+I G C+ G+ HEA + EM+V + P+ Y +
Sbjct: 269 SAVKLKNSMRAKG-VEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTL 327
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQK 284
I G+ ++G E R+ +M +G + D + N + L G + + MV L K
Sbjct: 328 INGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDK 384
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 87/201 (43%), Gaps = 20/201 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSK----LGSRERELVLFYCNLIDSFCKHDSKRGFDD-- 170
I+ L K + + AE ++ L K L + E +L+ + DS S R FD
Sbjct: 99 ILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDS-----SPRVFDSLF 153
Query: 171 -TYARLNQLVNSSSSVYVKR--------QALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
T A + + N++ + + ++ + +S L ++ + A +EMR +
Sbjct: 154 KTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRIS 213
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
P+ + ++ + + G LE ++ +MES G + N ++ Y L+ V
Sbjct: 214 PNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLLNSAVKL 273
Query: 282 LQKMKDSGIPFSVRTYNSVLN 302
M+ G+ +V T+NS+++
Sbjct: 274 KNSMRAKGVEANVVTFNSLID 294
>gi|413917024|gb|AFW56956.1| hypothetical protein ZEAMMB73_276172 [Zea mays]
Length = 666
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ C++G +EA L+ EM GL P Y C+I GY G +E+ ++ QM +
Sbjct: 410 MDAYCKLGNMNEAVKLLTEMMAGGLVPDKIHYTCLINGYCLKGEMENAWQVFEQMLKENV 469
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D V N++ S Y + + ++ L+ M + G+ + TY + S
Sbjct: 470 KPDVVTYNILASGYSRNGTVIKVYDLLEHMMNQGLEPNSLTYGVAITS 517
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 5/162 (3%)
Query: 152 YCNLIDSFC---KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y + I C K+D Y L+++ + V ++ A +I GLC+ + EA
Sbjct: 260 YSSFIIGLCDCGKYDLAYNMVSKYTVLHEI--TQERVAIESIAYNMVIDGLCKEMKLEEA 317
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E +++ G P + Y +I Y ++G LE + + M S G ++ +L
Sbjct: 318 EKVLDIKTRHGSTPDLYGYSYLIRSYCKMGNLEKVWHYIEAMVSHGIEINCYIVGYLLQC 377
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+S +++ QK +D G+ YN +++ + +M
Sbjct: 378 LKKLGMISEVIVHFQKFRDLGLHLDGVLYNIAMDAYCKLGNM 419
>gi|224576661|gb|ACN57004.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTYTILISG 172
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDG 101
>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 625
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 86/198 (43%), Gaps = 18/198 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV----LFYCNLIDSFCKHDSKRGFDDTY 172
+I+ K+G EA LS ERE + + Y +LI FCK R
Sbjct: 241 LISLYCKKGMHYEA-------LSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMR----EA 289
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
RL + + ++ +V ++I G C + +A L EEM +GL P+ Y I+
Sbjct: 290 MRLFKEIRDATPNHV---TYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILR 346
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+G + D +++N+M D V N ++++Y ++ + +M ++G+
Sbjct: 347 KLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKL 406
Query: 293 SVRTYNSVLNSCSTIMSM 310
TY ++++ I M
Sbjct: 407 DQFTYKALIHGFCKIREM 424
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 73/167 (43%), Gaps = 8/167 (4%)
Query: 144 RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--------SSSVYVKRQALKSM 195
R RE + + + D+ H + D Y RLN L + + +Y S+
Sbjct: 285 RMREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPTVVTYNSI 344
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
+ LCE+G+ +A L+ EM K +EP +I Y ++G ++ ++ N+M G
Sbjct: 345 LRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGL 404
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++D ++ + E+ L M D+G S TY+ +++
Sbjct: 405 KLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVD 451
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI + CK D+ + + S V+ ++IS C+ G +EA ++
Sbjct: 203 YNVLIHACCKSGDVEKADNLLSEM-----ESKCVFPDLFTYNTLISLYCKKGMHYEALSV 257
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M +G++P Y +I+G+ + G + + R+ ++ D T + V ++ Y
Sbjct: 258 QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR-DATP-NHVTYTTLIDGYCR 315
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N+L + + ++M+ G+ +V TYNS+L
Sbjct: 316 LNDLDQALRLREEMEAQGLYPTVVTYNSIL 345
>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
Length = 892
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/268 (23%), Positives = 113/268 (42%), Gaps = 19/268 (7%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P A NAL L D L R + N A +I L K+G +
Sbjct: 333 PNLFACNALIDKLCKDRRFREAERL-----FRGMANRGLEPNEVTYAILIHSLCKRGMMD 387
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A + + + + G R V Y +LI+ +C+HD+ F LN++V +
Sbjct: 388 DA-LCMFDRMREKGIRVT--VYPYNSLINGYCQHDN---FHQARGLLNEMV--EKGLAPS 439
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+ +I+GLC G A L EM G+ + + + +I G+ + G +++ R+ +
Sbjct: 440 AASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFD 499
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTI 307
+M + V N+++ Y + + +M D G+ TY S+++ C T+
Sbjct: 500 KMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTL 559
Query: 308 MSM-----LQDLNSNDFPLSILELTEVL 330
+M + DL +N L+ LT ++
Sbjct: 560 GAMKAKEFVDDLENNCVVLNSFSLTTLM 587
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 83/178 (46%), Gaps = 14/178 (7%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I LC+ + EAE L M +GLEP+ Y +I+ + G+++D + ++M
Sbjct: 337 ACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRM 396
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSC 304
G RV N +++ Y H+ + L +M + G+ S +Y+ ++
Sbjct: 397 REKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDL 456
Query: 305 STIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWD 354
++ M + +++ N ++ T +++ +E + ++ DSSV+ + ++
Sbjct: 457 ASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFN 514
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC+ G A+ L EEM V P+ F Y C + G LE ++++ +G
Sbjct: 691 LINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEGELEK-AKVLHATILEG 749
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+TV N ++ + ++ + +Q +SG +Y++++N
Sbjct: 750 CLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYSTIIN 797
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/121 (20%), Positives = 57/121 (47%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ V + +L +++ G C+ G+ E ++ +EMR +G++ + I+Y +L E
Sbjct: 573 NNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGE 632
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +M+ G + D V ++ + + + + KM G +V TY ++
Sbjct: 633 KISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLI 692
Query: 302 N 302
N
Sbjct: 693 N 693
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 64/146 (43%), Gaps = 19/146 (13%)
Query: 120 FLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179
FL +G+ E+A+ L L + + + LI FCK +G D
Sbjct: 729 FLANEGELEKAKVLHATILEGCLAN----TVTFNTLIKGFCKAGQIQGAIDLMQN----- 779
Query: 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK-----CIIYGY 234
N+ S + + ++I+ LC++G ++A L EM KGL+P Y C I+G
Sbjct: 780 NTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIRWCNIHGE 839
Query: 235 --GRLGLLEDMERIVNQMESDGTRVD 258
LG+ DM VN +D T V+
Sbjct: 840 FDKGLGIYSDM---VNLKYADDTPVN 862
>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 93/223 (41%), Gaps = 26/223 (11%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
AF ++ + + P LV + +I L + Q +EA L + + K R L
Sbjct: 211 AFQVFDEMRNMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEK--DRIVPDQLT 268
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA--------LKSMISGLCEMG 203
Y LI FC RL Q+ + S R+ ++I+G C+ G
Sbjct: 269 YNLLIGGFC-------------RLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKG 315
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ A + EEM G++P Y ++ R G +++ +V +M G + D V N
Sbjct: 316 EVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYN 375
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
++L ++ V L+K+ G+ +V +Y V+N CS
Sbjct: 376 LLLEGLCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCS 418
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 6/143 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C +GQ +A+++ MR EP+ F Y +I G+ + G +E + +M G
Sbjct: 272 LIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGVFEEMIRSG 331
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIM 308
+ D V ++ H + + +Q+M G V TYN +L + +
Sbjct: 332 VQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAEAV 391
Query: 309 SMLQDLNSNDFPLSILELTEVLN 331
++L+ L S L++ V+N
Sbjct: 392 TLLEKLPSEGVQLNVASYRIVMN 414
>gi|242050640|ref|XP_002463064.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
gi|241926441|gb|EER99585.1| hypothetical protein SORBIDRAFT_02g037020 [Sorghum bicolor]
Length = 558
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+++ P +A + EMR +P+ Y +I YG G+L++ ++++ME D
Sbjct: 405 SLLNAYGRSALPEKAREVFNEMRKNACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQD 464
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D + + +L++ G + +++ + L K GI + YNS + S
Sbjct: 465 GIQPDVISISTLLTACGRCRQPTKIGIILAAAKSRGIQLNTVAYNSGIGS 514
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G EA + ++ G +P Y ++ YGR L E + N+M +
Sbjct: 370 ALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTSLLNAYGRSALPEKAREVFNEMRKN 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + V N ++ +YG L + L +M+ GI V + +++L +C
Sbjct: 430 ACKPNKVSYNALIDAYGSAGMLKEAISLLHEMEQDGIQPDVISISTLLTACG 481
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGL 239
SS V + +I L ++ EA L MR + P Y I+Y Y G
Sbjct: 286 SSKVAPDTCTMNIVIHCLVKVALYGEAIELFNSMRERRTICPPDVVTYTSIMYSYSVCGQ 345
Query: 240 LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
E+ + + + M ++G R + V N +L +Y H + + + +K +G + +Y S
Sbjct: 346 AENCKAVFDMMVAEGVRPNIVSYNALLGAYASHGMHTEALETFKLLKQNGFKPDIVSYTS 405
Query: 300 VLNS 303
+LN+
Sbjct: 406 LLNA 409
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/252 (22%), Positives = 106/252 (42%), Gaps = 46/252 (18%)
Query: 66 ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG 125
SP IA N + L+ + R+ L+ ++ E++ + N + I+ L +G
Sbjct: 142 GCSPNLIAYNTMIQALA----NSRMVDKTILLFSKMMEKNC-RPNEFTYSVILTLLAAEG 196
Query: 126 QREEAETLI---------------LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170
Q + + ++ + TL+KLG LF CN+ + HD RG
Sbjct: 197 QLHKLDKVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLF-CNM---WSYHD--RG--- 247
Query: 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
R A SM+ LC G+ EA +L+ ++ KG+ Y +
Sbjct: 248 -----------------DRDACLSMLESLCNAGKTVEAIDLLGKIHEKGINTDTIMYNTV 290
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
GRL + + + +M+ DG D N+++SS+G ++ + +++++S
Sbjct: 291 FTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDC 350
Query: 291 PFSVRTYNSVLN 302
+ +YNS++N
Sbjct: 351 KPDIISYNSLIN 362
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 95/203 (46%), Gaps = 10/203 (4%)
Query: 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159
++ E S N + A ++ L+K G EA L S +R+ L ++++S
Sbjct: 203 KVVELSRKYMNRSIYAYLVRTLNKLGHASEAHRLFCNMWSYHDRGDRDACL---SMLESL 259
Query: 160 CKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
C D ++++ +N+ + +Y ++ + L + Q +L E+M++
Sbjct: 260 CNAGKTVEAIDLLGKIHEKGINTDTIMY------NTVFTALGRLKQISHLYDLYEKMKLD 313
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
G P F Y +I +GR G + + +I ++E+ + D + N +++ G + +L
Sbjct: 314 GPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPDIISYNSLINCLGKNGDLDEA 373
Query: 279 VLWLQKMKDSGIPFSVRTYNSVL 301
+ ++M++ G+ V TY++++
Sbjct: 374 HIRFREMQEKGLNPDVVTYSTLI 396
Score = 38.5 bits (88), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 23/111 (20%), Positives = 52/111 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++ L + + +A + E+M+ K EP + Y +I GR+G L++ + +M
Sbjct: 79 AFNMLLDALAKDQKVDQAFKVFEDMKKKHCEPDEYTYTIMIRMTGRIGKLDESLALFEEM 138
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ G + + N ++ + + + + +L KM + + TY+ +L
Sbjct: 139 LNKGCSPNLIAYNTMIQALANSRMVDKTILLFSKMMEKNCRPNEFTYSVIL 189
Score = 38.5 bits (88), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I+ L + G EA EM+ KGL P Y +I +G+ +E R+ ++M ++
Sbjct: 359 SLINCLGKNGDLDEAHIRFREMQEKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLAE 418
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + V N++L + V K+K G+ TY+
Sbjct: 419 GCFPNIVTYNILLDCLERSGRTAEAVDLYAKLKQQGLTPDSITYS 463
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 14/180 (7%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKR 189
+L+ + K G E V F C L+D+ CKH D+ + F+D R+ +++ + +
Sbjct: 198 VLDEMPKFGFEPDEYV-FGC-LLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMN 255
Query: 190 QA--------LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+A +++SG G+ +A +L+ +MR +G EP+ Y +I ++ +E
Sbjct: 256 EAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRME 315
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++ +ME D V ++S + ++ + + L M G+ S TY ++
Sbjct: 316 EAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIM 375
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 85/190 (44%), Gaps = 8/190 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI + CK D + + + + V +++SG C+ G+ + +
Sbjct: 301 YTVLIQALCKVDRMEEAMKVFVEMERYECEADVV-----TYTALVSGFCKWGKIDKCYIV 355
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+++M KGL PS Y I+ + + E+ ++ +M D N+V+
Sbjct: 356 LDDMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACK 415
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
E+ V +M+++G+ V T+ ++N ++ +L+ ++D +L L VL
Sbjct: 416 LGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLE---ASDHFKEMLLLNTVLK 472
Query: 332 EEEVSVVKEL 341
++++ + K++
Sbjct: 473 DKKLEMAKDV 482
>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 624
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 9/170 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ + LID C + + D + L ++ N+ V +++ G C + EA
Sbjct: 462 IIMFNALIDGHCVNGN---IDRAFQLLKEMDNAK--VVPDEVTFNTLMQGYCRERKVEEA 516
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L++EM+ +G++P Y +I GY + G ++D + ++M S G + N ++
Sbjct: 517 KKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSLGFDPTLLTYNALIQG 576
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
Y E L++M+ GI TY V+ + M DL ND
Sbjct: 577 YSKIGEADHAEELLREMQSKGITPDDSTYLYVIEA----MKTNDDLVEND 622
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ LC G+ +A++ I M V G++P+ Y +I GY G E +I M+
Sbjct: 223 MINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKN 282
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ D N +S + L K+ +SG+ + TYN++++ C
Sbjct: 283 LKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGC 332
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID C +K D +A ++++N V L +I L + EAE++
Sbjct: 325 YNALIDGCC---NKGDLDKAFAYRDEMMNRGIVASVFTYNL--LIHALFLEKRIEEAEDM 379
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I+EMR KG+EP Y I GY R G + + ++M R ++ +G
Sbjct: 380 IKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGK 439
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +S +K G+ + +N++++
Sbjct: 440 RNRMSEAEEKFKKSIKEGMLPDIIMFNALIDG 471
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G C G+ A + + M+ K L+P + Y I + +E+ ++ ++
Sbjct: 257 TVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLES 316
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V N ++ + +L + + +M + GI SV TYN ++++
Sbjct: 317 GLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHA 366
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 22/106 (20%), Positives = 50/106 (47%)
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I+G C G +A +L +EM K + P+ Y +I +G+ + + E + +G
Sbjct: 399 INGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGM 458
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D + N ++ + + + R L++M ++ + T+N+++
Sbjct: 459 LPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPDEVTFNTLM 504
>gi|147862347|emb|CAN84022.1| hypothetical protein VITISV_004991 [Vitis vinifera]
Length = 566
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI G C +G EA L E M+V+GLEP+ F + +I GY R G + ++M +
Sbjct: 197 SMICGYCNIGTLEEALVLFERMKVEGLEPNDFTWNXMIAGYARDGDCNGAFVLFSRMVRE 256
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLW--LQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G D V N ++S + L + W Q M +GI + T +L +C + S+
Sbjct: 257 GLVPDLVTWNAMISGF--TQSLKAVEAWRLFQDMXVAGIKPNQVTVTGLLPACGLMGSI 313
>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
Length = 800
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLC+ A+N++EEM K ++P F Y +I G+ R L D +I ME G
Sbjct: 665 LISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 724
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
R D V N ++ Y +S +L + M+
Sbjct: 725 VRPDIVSCNAMIKGYCQFGMMSEAILCMSNMR 756
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSK 165
P LV +I L K+G E+ +L LE R+R L V Y ++ID+ CK S
Sbjct: 482 PTLVTYGSLINCLGKKGDLEKIGSLFLEM------RKRGLSPNVQIYNSVIDALCKCWSA 535
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
L Q+ S + ++I+GLC G +AE+ + E + L P+
Sbjct: 536 ---TQAMVILKQMFASGCDPDII--TFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQL 590
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+G+ G L ++ +M G D V ++ ++S ++ +KM
Sbjct: 591 SYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKM 650
Query: 286 KDSGIPFSVRTYNSVLNS 303
+ + V YN +++
Sbjct: 651 TERQVFPDVNIYNVLISG 668
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 15/155 (9%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
D+++ +D+ + N S+ V V+ GLC G+ E LIE G P
Sbjct: 397 DARKLYDEMLGEDSGADNYSTCVLVR---------GLCLEGRVEEGLKLIEARWGAGCIP 447
Query: 223 SGFEYKCIIYGYGRLGLLEDMER---IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
Y +I GY R G DM R ++ +ME+ G V +++ G +L ++
Sbjct: 448 HVVFYNVLIDGYCRRG---DMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIG 504
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+M+ G+ +V+ YNSV+++ S Q +
Sbjct: 505 SLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAM 539
>gi|15219974|ref|NP_173709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806406|sp|P0C7Q9.1|PPR56_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g22960, mitochondrial; Flags: Precursor
gi|332192194|gb|AEE30315.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 718
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G E GQ A NL +EM K L PS Y +IYG+ + G LE + +M+
Sbjct: 555 TVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKR 614
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G R + + N +L + +L KM++ GIP + +Y +++
Sbjct: 615 GVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLIS 663
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 32/165 (19%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVN-------SSSSVYV-----------KRQALKSM- 195
LI+ +CK FDD + ++++N S+ ++Y+ R+ L SM
Sbjct: 314 LIEGYCKQGL---FDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA 370
Query: 196 ----------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ G +MG+ EA L +++R + PS Y +I G G LE +R
Sbjct: 371 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 430
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ +M + D + ++ + + LS +M GI
Sbjct: 431 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGI 475
Score = 38.5 bits (88), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + G+ +A EM+ +G+ P+ + ++YG + G +++ R + +ME +G
Sbjct: 591 LIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEG 650
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ M++S D + +V ++M D I
Sbjct: 651 IPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEI 686
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/159 (22%), Positives = 75/159 (47%), Gaps = 6/159 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +LI+ C HD D+ + +V S + + ++I+G C+ + +
Sbjct: 295 IVTYSSLINGLCLHDR---IDEANQMFDLMV--SKGCFPDVVSYNTLINGFCKAKRVEDG 349
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +M +GL + Y +I G+ ++G ++ + +QM+S G D N++L
Sbjct: 350 MKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGG 409
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
D+ L + ++ + M+ S + + TY +V+ C T
Sbjct: 410 LCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKT 448
>gi|206575138|gb|ACI14439.1| Os01g67210-like protein [Aegilops speltoides]
Length = 358
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 88/171 (51%), Gaps = 18/171 (10%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GL + G+ +A+++I M +GL P + Y I+ GY + G++++ ++ + +
Sbjct: 199 VITGLSKEGEMEDAKDMIRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIY 258
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIM----- 308
+++ V ++++ Y E + + L++MK G+ +V YN ++ S C M
Sbjct: 259 RKLNRVSYHILIRGYCKMEEFDKALECLKEMKQDGVQPNVDEYNKLIQSLCLKAMDWRTA 318
Query: 309 -SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGET 358
+L+++ + L LT L ++ VKELE ++EA K DS E
Sbjct: 319 EKLLEEMEGSGLYLK--GLTRSL----IAAVKELE----MEEASK-DSQEA 358
>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 458
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 149 VLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +ID+ CK FD Y + ++ + Y ++I G C +G+ E
Sbjct: 172 VVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYT------ALIDGFCVVGKLEE 225
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L ++M + + P+ + + ++ + + G +E+ + ++N M + D V + +++
Sbjct: 226 ALGLFKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMN 285
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
Y NE+ + + M + + + VR+YN ++N
Sbjct: 286 GYCLVNEVFKAQSIFKTMAERELSYDVRSYNIMIN 320
>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
Length = 636
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 80/180 (44%), Gaps = 14/180 (7%)
Query: 127 REEAETLILETLSKLGSRERELVLF-YCNLIDSFCKH----DSKRGFDDTYARLNQLVNS 181
+++A + + L + +R R +F Y +++ CK + R F D R
Sbjct: 309 KDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDR------- 361
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
R +MI GLC M +A L EM KG P+ + Y +I+GY ++G LE
Sbjct: 362 --GYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLE 419
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++ +M G TV N+++ H ++ ++M GI + TYN+++
Sbjct: 420 EAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALV 479
Score = 45.4 bits (106), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 68/158 (43%), Gaps = 18/158 (11%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLV------NSSSSVYVKRQALKSMISGLCEMGQPHEA 208
LI FCK D Y R++ L+ N + ++ ++ +++GLC+ G+ E
Sbjct: 303 LISGFCK-------DKAYGRVSDLLHSMIARNRAPDIFTYQE----VVNGLCKGGKGPEG 351
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ ++++ +G P Y +I+G R+ L D ++ +M G + N ++
Sbjct: 352 FRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHG 411
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
Y L ++M D G +YN ++ CS
Sbjct: 412 YFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCS 449
Score = 41.6 bits (96), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 77/185 (41%), Gaps = 8/185 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G EEA + E K G E+ + Y +I C H + D + + S
Sbjct: 414 KIGNLEEAWKMYREMCDK-GYGEKTVS--YNVMIKGLCSHGKIKEAHDLFEEM-----SH 465
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ +++ G C+ G+ E NL+ E+ +G++PS Y +I + G +++
Sbjct: 466 KGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQN 525
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + + M++ G + +++ + + WL M S + +++ S++
Sbjct: 526 AKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQ 585
Query: 303 SCSTI 307
S I
Sbjct: 586 CLSQI 590
>gi|302753732|ref|XP_002960290.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
gi|300171229|gb|EFJ37829.1| hypothetical protein SELMODRAFT_73828 [Selaginella moellendorffii]
Length = 546
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AE L+ EM K L P F + +I GYGR LED + +ME+ G + D V + ++
Sbjct: 44 AEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIE 103
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + S+ K+K SGI YNS++N
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMIN 138
Score = 42.0 bits (97), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+ + EA+ L+ EM+ GL P Y +I Y + +++ +M++
Sbjct: 135 SMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTK 194
Query: 254 GTRVDTVCSNMVLSSYG------DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G ++D NM++ YG D EL W K GI +V TYN+++
Sbjct: 195 GIQLDVTTCNMMIDVYGKLEMVRDAEEL----FWSMS-KTLGIQQNVVTYNTMIK 244
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 23/258 (8%)
Query: 51 TRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
+D A+ L SK AS +P + N++ +L + L + E
Sbjct: 108 VKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGL-------LAEMKEAG 160
Query: 109 WNPKLVAEII---AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCKHDS 164
P V+ I A+ + Q + EA+ + LE + ++ +L + CN+ ID + K +
Sbjct: 161 LMPDTVSYTILINAYAESQ-KYLEAKQVFLE----MKTKGIQLDVTTCNMMIDVYGKLEM 215
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPS 223
R ++ + +++ + +V +MI E EA N+ M+ KG +EP+
Sbjct: 216 VRDAEELFWSMSKTLGIQQNVVT----YNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPN 271
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I++ +G E R+V +M+ G + V + ++S YG + R +
Sbjct: 272 VITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFK 331
Query: 284 KMKDSGIPFSVRTYNSVL 301
+++ G Y S++
Sbjct: 332 TLREKGFEMDEILYQSMI 349
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A +L +++ G+ P Y +I YG+ ++ + ++ +M+ G DTV +++
Sbjct: 113 KATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILI 172
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
++Y + + +MK GI V T N +++ + M++D
Sbjct: 173 NAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGK-LEMVRD 218
>gi|302768008|ref|XP_002967424.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
gi|300165415|gb|EFJ32023.1| hypothetical protein SELMODRAFT_231012 [Selaginella moellendorffii]
Length = 546
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 48/95 (50%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AE L+ EM K L P F + +I GYGR LED + +ME+ G + D V + ++
Sbjct: 44 AEGLVLEMVEKDLVPDKFTFSTLISGYGRANRLEDAMGWLQEMEAGGIKPDLVIFSTLIE 103
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + S+ K+K SGI YNS++N
Sbjct: 104 LAGKVKDYSKATSLFSKLKASGIAPDKVIYNSMIN 138
Score = 42.0 bits (97), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 11/115 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+ + EA+ L+ EM+ GL P Y +I Y + +++ +M++
Sbjct: 135 SMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILINAYAESQKYLEAKQVFLEMKTK 194
Query: 254 GTRVDTVCSNMVLSSYG------DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G ++D NM++ YG D EL W K GI +V TYN+++
Sbjct: 195 GIQLDVTTCNMMIDVYGKLEMVRDAEEL----FWSMS-KTLGIQQNVVTYNTMIK 244
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 109/258 (42%), Gaps = 23/258 (8%)
Query: 51 TRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108
+D A+ L SK AS +P + N++ +L + L + E
Sbjct: 108 VKDYSKATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGL-------LAEMKEAG 160
Query: 109 WNPKLVAEII---AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCKHDS 164
P V+ I A+ + Q + EA+ + LE + ++ +L + CN+ ID + K +
Sbjct: 161 LMPDTVSYTILINAYAESQ-KYLEAKQVFLE----MKTKGIQLDVTTCNMMIDVYGKLEM 215
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPS 223
R ++ + +++ + +V +MI E EA N+ M+ KG +EP+
Sbjct: 216 VRDAEELFWSMSKTLGIQQNVVT----YNTMIKVYKEAELLSEAFNVFYYMQNKGGVEPN 271
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I++ +G E R+V +M+ G + V + ++S YG + R +
Sbjct: 272 VITYNTILFLHGLTLQHEKAMRLVRKMQQRGIEPNAVTYSTLISIYGKTGKYDRAAFLFK 331
Query: 284 KMKDSGIPFSVRTYNSVL 301
+++ G Y S++
Sbjct: 332 TLREKGFEMDEILYQSMI 349
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A +L +++ G+ P Y +I YG+ ++ + ++ +M+ G DTV +++
Sbjct: 113 KATSLFSKLKASGIAPDKVIYNSMINLYGKAKFYKEAQGLLAEMKEAGLMPDTVSYTILI 172
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
++Y + + +MK GI V T N +++ + M++D
Sbjct: 173 NAYAESQKYLEAKQVFLEMKTKGIQLDVTTCNMMIDVYGK-LEMVRD 218
>gi|224576655|gb|ACN57001.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 41.6 bits (96), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGXAINSMFYSSLIDG 101
>gi|357485117|ref|XP_003612846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355514181|gb|AES95804.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 892
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 3/123 (2%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S VY + A S+++G C G+ A L +EM +G P+ Y C I Y +L
Sbjct: 589 SRVYPDQIAYTSLVAGFCNTGEMTRARALFDEMSREGCSPNVVTYTCFINEYLKLNKNNQ 648
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG--IPFSVRTYNSV 300
++ +M+ G D + M+++++ + E++R +MK G P +V Y +
Sbjct: 649 AHKLYEKMKERGVYPDQILYTMLIAAFCNTGEMNRAEALFDEMKQEGRCTP-NVVMYTCL 707
Query: 301 LNS 303
+NS
Sbjct: 708 INS 710
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LID FCK D ++ NS VY + +I G C G A
Sbjct: 353 YSILIDGFCKEGR---VDKALEVFEEMKNSGILPDVY----SYSILIDGFCRKGDMDSAI 405
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
EEM PS F Y +I GY + + + M+ G DT+ N +LS Y
Sbjct: 406 KFWEEMTSNNFSPSAFNYCSLIKGYYKSKQFANALKEFRIMQKLGMWPDTIACNHILSIY 465
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ ++ + +K +++G+ F+ +YN ++
Sbjct: 466 CRKPDFNKALALSEKFQENGVHFNPYSYNEFIH 498
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 76/164 (46%), Gaps = 14/164 (8%)
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R NQ +N+ ++I GLC+ G EA + +EM+ G+ P + Y +I
Sbjct: 272 CRKNQPLNN--------HCFNAVIYGLCQGGILDEASEVFKEMKNSGILPDVYSYSILID 323
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ R G ++ + +M + G + ++++ + + + + ++MK+SGI
Sbjct: 324 GFCRKGRVDQASEVFKEMRNSGILPNIYSYSILIDGFCKEGRVDKALEVFEEMKNSGILP 383
Query: 293 SVRTYNSVLNS-C-----STIMSMLQDLNSNDFPLSILELTEVL 330
V +Y+ +++ C + + +++ SN+F S ++
Sbjct: 384 DVYSYSILIDGFCRKGDMDSAIKFWEEMTSNNFSPSAFNYCSLI 427
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 83/185 (44%), Gaps = 13/185 (7%)
Query: 124 QGQREEAETLILETLSKLGSRERE-----LVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178
+ R + L+ E L K G R ++ F+C + C D +R + L ++
Sbjct: 183 EDNRVDGVRLLFEVLIKFGPRPNIHTYTIMMNFFCRGVG--CSVDIRRASEI----LGKI 236
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
S + V + I GLC++G A LI+ + K + + +IYG + G
Sbjct: 237 YMSGETPNVVTYG--TYIKGLCKVGLFGVAWRLIQNLCRKNQPLNNHCFNAVIYGLCQGG 294
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+L++ + +M++ G D ++++ + + + ++M++SGI ++ +Y+
Sbjct: 295 ILDEASEVFKEMKNSGILPDVYSYSILIDGFCRKGRVDQASEVFKEMRNSGILPNIYSYS 354
Query: 299 SVLNS 303
+++
Sbjct: 355 ILIDG 359
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID++CK K G RL L + ++ + +I+GLC GQ E
Sbjct: 238 VVTYNTIIDAYCKL-RKIGEAFKLLRLMALKGLNPNLI----SYNVVINGLCREGQMKET 292
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++EEM + P + +I GY +G + +M +G + V +++S
Sbjct: 293 SEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINS 352
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLS 322
L+R + +L +M+D G+ + RTY ++++ S +++++ N F +
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAM 351
I+ ++N ++ +ED+S L + M
Sbjct: 413 IITYNALINGH--CILGRMEDASGLLQEM 439
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLV-NSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LID F S++GF Y + ++V N + + AL I+G C +G+ +A
Sbjct: 381 YTTLIDGF----SQQGFLKQAYQIMKEMVENGFTPTIITYNAL---INGHCILGRMEDAS 433
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L++EM +G P Y II G+ R LE ++ +M + G D + ++
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + Q+M G+P TY S++N+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+S CK + + L+Q+ ++ + ++I G + G +A
Sbjct: 343 VVTYTTLINSMCKAGN---LNRAMEFLDQM--RDRGLHPNGRTYTTLIDGFSQQGFLKQA 397
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++EM G P+ Y +I G+ LG +ED ++ +M G D V + ++S
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + EL + +M GI V TY+S++
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 22/190 (11%)
Query: 125 GQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVN 180
G+ E+A L+ E + ER V+ Y +I FC++ ++ F + + ++
Sbjct: 427 GRMEDASGLLQEMI------ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ Y S+I GLC+ + E +L +EM GL P Y +I Y G L
Sbjct: 481 PDVATY------SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDL 534
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN---ELSRMVLWLQKMKDSGIPFSVRTY 297
+ R+ ++M G D V N++++ + + E R++L L + + +P + TY
Sbjct: 535 DKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL--LYEESVPNEI-TY 591
Query: 298 NSVLNSCSTI 307
N+++++C+ +
Sbjct: 592 NTLIDNCNNL 601
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AE + +EM G+ P+ + Y +I G+ G LE +ME +G + V N ++
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIID 246
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+Y ++ L+ M G+ ++ +YN V+N
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 22/194 (11%)
Query: 130 AETLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARL 175
A T +L LS+ G ER L LF Y ++D + + ++ R+
Sbjct: 176 AYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGR------MGRSWPRI 229
Query: 176 NQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L++ + V+ ++I+ C G EA E+++ +G P Y ++
Sbjct: 230 VALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALLQV 289
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+G+ G + R++ +ME +G + D V N + +Y L M G+ +
Sbjct: 290 FGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPN 349
Query: 294 VRTYNSVLNSCSTI 307
TYN+V+ + +
Sbjct: 350 AFTYNTVMTAYGNV 363
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G EA ++ EM G +P Y + Y R G E+ R ++ M S G +
Sbjct: 294 GNYTEALRVLGEMEQNGCQPDAVTYNELAGTYARAGFFEEAARCLDTMASKGLLPNAFTY 353
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N V+++YG+ ++ + +MK +G +V TYN VL
Sbjct: 354 NTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLG 393
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 50/100 (50%)
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EA ++ M KGL P+ F Y ++ YG +G +++ + +QM+ G + N+V
Sbjct: 332 EEAARCLDTMASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLV 391
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
L G + + M+ L +M SG + T+N++L C
Sbjct: 392 LGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCG 431
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 9/186 (4%)
Query: 109 WNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
+NP LV +++ K G +A T + +++ + G ++ Y +L+D + K
Sbjct: 592 YNPDLVIFNSMLSIYAKNGMYSKA-TEVFDSIKRSGLSPD--LITYNSLMDMYAKCSESW 648
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
+ LNQL S ++ + ++I+G C+ G EA+ ++ EM G+ P
Sbjct: 649 EAEKI---LNQL-KCSQTMKPDVVSYNTVINGFCKQGLVKEAQRVLSEMVADGMAPCAVT 704
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y ++ GY L + + ++ M G + + V+ SY +L ++
Sbjct: 705 YHTLVGGYSSLEMFSEAREVIGYMVQHGLKPMELTYRRVVESYCRAKRFEEARGFLSEVS 764
Query: 287 DSGIPF 292
++ + F
Sbjct: 765 ETDLDF 770
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV-- 247
+A +++ L G+ A L E+R +G+ P+ Y ++ YGR+G RIV
Sbjct: 175 RAYTTVLHALSRAGRYERALELFAELRRQGVAPTLVTYNVVLDVYGRMG--RSWPRIVAL 232
Query: 248 -NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++M + G D ++ V+++ + V + + +K G V TYN++L
Sbjct: 233 LDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVTYNALL 287
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +ID++CK K G RL L + ++ + +I+GLC GQ E
Sbjct: 238 VVTYNTIIDAYCKL-RKIGEAFKLLRLMALKGLNPNLI----SYNVVINGLCREGQMKET 292
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++EEM + P + +I GY +G + +M +G + V +++S
Sbjct: 293 SEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINS 352
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLS 322
L+R + +L +M+D G+ + RTY ++++ S +++++ N F +
Sbjct: 353 MCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPT 412
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAM 351
I+ ++N ++ +ED+S L + M
Sbjct: 413 IITYNALINGH--CILGRMEDASGLLQEM 439
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLV-NSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LID F S++GF Y + ++V N + + AL I+G C +G+ +A
Sbjct: 381 YTTLIDGF----SQQGFLKQAYQIMKEMVENGFTPTIITYNAL---INGHCILGRMEDAS 433
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L++EM +G P Y II G+ R LE ++ +M + G D + ++
Sbjct: 434 GLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGL 493
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + Q+M G+P TY S++N+
Sbjct: 494 CKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINA 527
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+S CK + + L+Q+ ++ + ++I G + G +A
Sbjct: 343 VVTYTTLINSMCKAGN---LNRAMEFLDQM--RDRGLHPNGRTYTTLIDGFSQQGFLKQA 397
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+++EM G P+ Y +I G+ LG +ED ++ +M G D V + ++S
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + EL + +M GI V TY+S++
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLI 490
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 90/190 (47%), Gaps = 22/190 (11%)
Query: 125 GQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVN 180
G+ E+A L+ E + ER V+ Y +I FC++ ++ F + + ++
Sbjct: 427 GRMEDASGLLQEMI------ERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKGIS 480
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+ Y S+I GLC+ + E +L +EM GL P Y +I Y G L
Sbjct: 481 PDVATY------SSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDL 534
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN---ELSRMVLWLQKMKDSGIPFSVRTY 297
+ R+ ++M G D V N++++ + + E R++L L + + +P + TY
Sbjct: 535 DKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL--LYEESVPNEI-TY 591
Query: 298 NSVLNSCSTI 307
N+++++C+ +
Sbjct: 592 NTLIDNCNNL 601
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AE + +EM G+ P+ + Y +I G+ G LE +ME +G + V N ++
Sbjct: 187 AEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIID 246
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+Y ++ L+ M G+ ++ +YN V+N
Sbjct: 247 AYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVING 282
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID FCK D + +++V S+ V ++I GL + G+ A +
Sbjct: 117 YNTLIDGFCKKKDLVAAKDVF---DKMVRSNCVPNV--VTYTTLIDGLSKSGKVQAAAEV 171
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ M KG+ P+ Y C+I G+ ++ +++ +++ QM + G V N++L+S
Sbjct: 172 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 231
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++L + M +V TYN++L +
Sbjct: 232 ADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 263
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHE 207
L Y +++ CK +KR DD A + ++ +K A ++SGLC+ + E
Sbjct: 10 LTYGPIVERLCK--TKR-IDDALATVEEMATRG----IKPDAFIYNFVLSGLCQEEKVEE 62
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L E+M + + P+ Y +I G + +E + +M G V N ++
Sbjct: 63 ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ +L KM S +V TY ++++ S
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLS 160
>gi|8777358|dbj|BAA96948.1| salt-inducible protein-like [Arabidopsis thaliana]
Length = 1012
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + G EA L+ +M +G+EP+ Y II G ++G LE+ + N++ S G
Sbjct: 324 LIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVG 383
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VD ++ L+R L M+ GI S+ TYN+V+N
Sbjct: 384 IEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVING 432
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY-----GYGRLGLLEDMERIVN 248
+++S LC++G+ E +L V+ LE GFE+ C+ Y GY + G L D
Sbjct: 253 TLVSALCQLGKVDEVRDL-----VRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDR 307
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M G D V ++++ + + L KM G+ ++ TY +++
Sbjct: 308 EMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAII 360
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G +AE L++ M KGL P+ Y I+ GY +LG ED R+V++
Sbjct: 772 LIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGR 831
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D + ++ Y ++ + + KD I
Sbjct: 832 VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNI 867
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
L +C+LI F + K D+ L + N + + ++ISG C++G+P A
Sbjct: 176 LTFCSLIYRFVE---KGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELAL 232
Query: 210 NLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E G L P+ Y ++ +LG ++++ +V ++E +G D V + +
Sbjct: 233 GFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHG 292
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y L ++ ++M + G+ V +Y+ +++ S
Sbjct: 293 YFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLS 329
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ CK GF L S V + S+I+GLC+ G EA
Sbjct: 696 VIDYTIIINGLCKE----GFLVKALNLCSFAKSRG-VTLNTITYNSLINGLCQQGCLVEA 750
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + + GL PS Y +I + GL D E++++ M S G + + N ++
Sbjct: 751 LRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 810
Query: 269 Y 269
Y
Sbjct: 811 Y 811
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV----LFYCNLIDSFCKHDSKRGFDDTY 172
+I L K+G EEA L LG +E V + Y +I CK ++ +
Sbjct: 324 LIDGLSKEGNVEEA-------LGLLGKMIKEGVEPNLITYTAIIRGLCKMGK---LEEAF 373
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
N+++ S + V ++I G+C G + A +++ +M +G++PS Y +I
Sbjct: 374 VLFNRIL--SVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 431
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G + + + + S G D + + +L SY + ++ ++ ++ IP
Sbjct: 432 GLCMAGRVSEADEV-----SKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPM 486
Query: 293 SVRTYNSVLNS 303
+ N +L +
Sbjct: 487 DLVMCNILLKA 497
>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 529
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 15/161 (9%)
Query: 155 LIDSFCKHDSKRGFDDTYARL------------NQLVNSSSSVYVKRQALKSMISGLCEM 202
LID+FCK + + +A + N L++ V V ++A KS+ + + +M
Sbjct: 228 LIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKA-KSIFNTMIKM 286
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
EA NL EEM K + P Y +I G + G + + +M G D
Sbjct: 287 VD--EAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTY 344
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +L + + + + + L K+KD GI SV TYN ++N
Sbjct: 345 NSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILING 385
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 15/181 (8%)
Query: 99 MRITEESWF-QWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF-YCN 154
M + EE F Q P +V +I L K G+ A L+ + ++ R + +F Y +
Sbjct: 291 MNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYA----LKFIGEMHYRGQPPDIFTYNS 346
Query: 155 LIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
L+D+ CK+ + +L +Q + S Y +I+GLC+ G+ +AE + E
Sbjct: 347 LLDALCKNYHVDKAIELLTKLKDQGIQPSVCTY------NILINGLCKSGRLKDAEKVFE 400
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
++ VKG + Y +I G+ + GL ++ +V++M+ G D +++ S D
Sbjct: 401 DLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEIIIRSLFDKG 460
Query: 274 E 274
E
Sbjct: 461 E 461
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ +A L+ +++ +G++PS Y +I G + G L+D E++ +
Sbjct: 346 SLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVK 405
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G D N ++ + + + KMKDSG + +C I+ L D
Sbjct: 406 GYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAK-------NCEIIIRSLFD 458
Query: 314 LNSND 318
ND
Sbjct: 459 KGEND 463
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 9/189 (4%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192
L+ ET+++ G V Y L+D +C S+ D+ N + + V+ +
Sbjct: 171 LVFETMTEKGLEPD--VYTYNALVDGYC---SRSQMDEAQKLFNIMDRKGCAPNVRSYNI 225
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+I+G C+ G+ EA+ L+ EM K L P F Y ++ G+ ++G ++ + ++ +M S
Sbjct: 226 --LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCS 283
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI--MSM 310
G + + ++VL H L L+ M++S I ++ Y ++ T +
Sbjct: 284 YGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEA 343
Query: 311 LQDLNSNDF 319
++L SN F
Sbjct: 344 ARELFSNLF 352
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+++SGLC + +A L +EM G EP Y II G ++G +++ +M
Sbjct: 12 TFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQLLKKM 71
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E G + + V N ++ S ++ + + +M GIP V TY+S+L+
Sbjct: 72 EEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 84/194 (43%), Gaps = 19/194 (9%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ +EA+ L+ E S G ++ Y ++D CKH D+ + L + S
Sbjct: 269 GRPQEAQELLKEMCS-YGLLPN--LITYSIVLDGLCKHGH---LDEAFELLKAMQESKIE 322
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + +I G+C G+ A L + VKG++P+ Y +I G + GL +
Sbjct: 323 PNIFIYTI--LIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEAC 380
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ +M +G ++ N+++ + + + V +++M G FS
Sbjct: 381 ELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKG--FSAD--------- 429
Query: 305 STIMSMLQDLNSND 318
S+ ML DL S+D
Sbjct: 430 SSTFRMLSDLESSD 443
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I LC+ EA + EM +G+ P F Y I++G+ LG + + + QM
Sbjct: 82 AYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSLFKQM 141
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
+ V +++ +S L + M + G+ V TYN++++ CS
Sbjct: 142 VERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCS 197
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +++ FC ++ + Q+V +V + +I GLC+ EA
Sbjct: 115 VFTYSSILHGFCNLGR---VNEATSLFKQMV--ERNVIPNKVTFTILIDGLCKKRMISEA 169
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ E M KGLEP + Y ++ GY +++ +++ N M+ G + N++++
Sbjct: 170 WLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILING 229
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + L +M + + TY++++
Sbjct: 230 HCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLM 262
>gi|168047776|ref|XP_001776345.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672305|gb|EDQ58844.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 503
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 68/145 (46%), Gaps = 11/145 (7%)
Query: 170 DTYARLNQLVNSSSSVYVKRQ--------ALKSMISGLCEMGQPHE---AENLIEEMRVK 218
D Y R+ QL + + R+ ++I+G E + AE LIEEM
Sbjct: 217 DAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEAS 276
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL P + ++ YG GL E E++ N+M++ G + ++ ++++Y + +
Sbjct: 277 GLYPDVVTFTMLLGAYGHEGLTEQAEQVFNRMKARGVQPNSYSYTALINAYAERRCPEKA 336
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ G+ +V TY ++L++
Sbjct: 337 ARAFEMIRKQGVNPTVETYTALLDA 361
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+ I C+ G+ EA + EM + + Y +I YGR+G LE+ E ++ +M
Sbjct: 179 TFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIYNILIDAYGRVGQLEEAEGLMTEMRER 238
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVL---WLQKMKDSGIPFSVRTYNSVLNS 303
G + + N +++ Y + + V+ +++M+ SG+ V T+ +L +
Sbjct: 239 GIQPNVGTYNALITGYLEAKPKRQFVVAEGLIEEMEASGLYPDVVTFTMLLGA 291
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G E L ++M +G+ PS + I + G L++ I +ME + V
Sbjct: 153 GSLKEVWALYQDMVQRGISPSVSVFGTFIKAFCDAGRLKEALLITTEMEKLNVPFNVVIY 212
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N+++ +YG +L + +M++ GI +V TYN+++
Sbjct: 213 NILIDAYGRVGQLEEAEGLMTEMRERGIQPNVGTYNALITG 253
Score = 39.3 bits (90), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+ E P +A E +R +G+ P+ Y ++ Y R G LE ++ + M+ +
Sbjct: 322 ALINAYAERRCPEKAARAFEMIRKQGVNPTVETYTALLDAYRRAGDLEMVQAVWKSMKVE 381
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G V +L ++ +++ K+ G + YN +LNS
Sbjct: 382 GCVATRVTYMTILDAFQKQGRYKEARDLIEEFKNQGHKPDLMVYNMLLNS 431
>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
Length = 1107
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A L EEM+ +GL P Y +I G+G++G L+D +M+
Sbjct: 136 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 195
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + ++MK +G+ +V +Y++++++
Sbjct: 196 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 244
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ ++G+ + + ++M G P+ F Y +I + G +E
Sbjct: 91 VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAAR 150
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ +G L V + ++MKD V TYN+++N
Sbjct: 151 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 208
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ +C LID CK+ D + R++ ++ + +MI GLC+ Q A
Sbjct: 445 VVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAI----FTAMIDGLCKDNQVEAA 500
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E+M KGL P Y ++ G + G + + + ++M G ++D + ++
Sbjct: 501 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 560
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
N+L + +L++M GI
Sbjct: 561 LSHCNQLQKARSFLEEMIGEGI 582
Score = 45.1 bits (105), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 82/178 (46%), Gaps = 10/178 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID C + + ++ + +++ ++ V + ++I G + A
Sbjct: 305 VVTYTALIDGLCDAERMKEAEELFGKMD-----TAGVIPNLASYNALIHGFVKAKNMDRA 359
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ E++ +G++P Y I+G L +E + ++N+M+ G + +++ ++ +
Sbjct: 360 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 419
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST--IMSMLQDLN--SNDFPL 321
Y + + L +MK+ I +V T+ +++ C + + N SNDF L
Sbjct: 420 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGL 477
Score = 42.0 bits (97), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ C+ G +A +MR GL P+ + Y +I ++G L D R+ N+M
Sbjct: 240 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 299
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V ++ D + KM +G+ ++ +YN++++
Sbjct: 300 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 349
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/173 (20%), Positives = 75/173 (43%), Gaps = 11/173 (6%)
Query: 141 LGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197
+G+ R V Y +ID CK ++ RG + + LV + + SMI
Sbjct: 122 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE-MKFRGLVPDTVT-------YNSMID 173
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G ++G+ + EEM+ EP Y +I + + G L +M+ +G +
Sbjct: 174 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 233
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ V + ++ ++ + + + + M+ G+ + TY S++++ I ++
Sbjct: 234 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 286
Score = 38.1 bits (87), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y L+D+FCK + Y + ++ + S+I C++G +A
Sbjct: 235 VVSYSTLVDAFCKEGMMQQAIKFYVDMRRV-----GLVPNEYTYTSLIDANCKIGNLSDA 289
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EM G+E + Y +I G +++ E + +M++ G + N ++
Sbjct: 290 FRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 349
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + R + L ++K GI + Y + +
Sbjct: 350 FVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 382
>gi|2462828|gb|AAB72163.1| hypothetical protein [Arabidopsis thaliana]
Length = 1152
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G E GQ A NL +EM K L PS Y +IYG+ + G LE + +M+
Sbjct: 592 TVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKR 651
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G R + + N +L + +L KM++ GIP + +Y +++
Sbjct: 652 GVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLIS 700
Score = 38.5 bits (88), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + G+ +A EM+ +G+ P+ + ++YG + G +++ R + +ME +G
Sbjct: 628 LIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEG 687
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ M++S D + +V ++M D I
Sbjct: 688 IPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEI 723
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 32/165 (19%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVN-------SSSSVYV-----------KRQALKSMI 196
LI+ +CK FDD + ++++N S+ ++Y+ R+ L SM
Sbjct: 351 LIEGYCKQGL---FDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA 407
Query: 197 S-----------GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ G +MG+ EA L +++R + PS Y +I G G LE +R
Sbjct: 408 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 467
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ +M + D + ++ + + LS +M GI
Sbjct: 468 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGI 512
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 80/192 (41%), Gaps = 18/192 (9%)
Query: 130 AETLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARL 175
A T +L LS+ G ER + LF Y ++D + + R + A L
Sbjct: 175 AYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMG--RSWPRIVALL 232
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+++ ++ V ++I+ C G EA E+++ +G P Y ++ +G
Sbjct: 233 DEM--RAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALLQVFG 290
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G + R++ +ME DG + D V N + +Y L M G+ +
Sbjct: 291 KAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAF 350
Query: 296 TYNSVLNSCSTI 307
TYN+V+ + I
Sbjct: 351 TYNTVMTAYGNI 362
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 48/100 (48%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G EA +++EM G +P Y + Y R G E+ + ++ M S G +
Sbjct: 293 GNYTEALRVLKEMEQDGCQPDAVTYNELAGTYARAGFYEEAAKCLDTMTSKGLLPNAFTY 352
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N V+++YG+ ++ + +MK SG +V TYN +L
Sbjct: 353 NTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILG 392
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G EA ++ M KGL P+ F Y ++ YG +G +++ + +QM+ G +
Sbjct: 328 GFYEEAAKCLDTMTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTY 387
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
N +L G + + M+ L +M SG + T+N++L C
Sbjct: 388 NFILGMLGKKSRFTVMLEMLGEMSRSGCTPNRVTWNTMLAVCG 430
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
LNQL SS V + ++I+G C+ G EA+ ++ EM G+ P Y ++ GY
Sbjct: 652 LNQL--KSSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGY 709
Query: 235 GRLGLLEDMERIVNQM 250
L + + ++N M
Sbjct: 710 ASLEMFSEAREVINYM 725
Score = 43.1 bits (100), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV-- 247
+A +++ L G+ A L E+R +G+ P+ Y ++ YGR+G RIV
Sbjct: 174 RAYTTVLHALSRAGRYERAVELFAELRRQGVAPTLVTYNVVLDVYGRMG--RSWPRIVAL 231
Query: 248 -NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++M + G D ++ V+++ + V + + +K G V TYN++L
Sbjct: 232 LDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVTYNALL 286
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/116 (20%), Positives = 53/116 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
SM+S + G + + + ++ GL P Y ++ Y + + E+I+NQ++
Sbjct: 597 FNSMLSMYAKNGMYSKVTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLK 656
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
S + D V N V++ + + L +M G+ V TY++++ +++
Sbjct: 657 SSQVKPDVVSYNTVINGFCKQGLIKEAQRILSEMIADGMAPCVVTYHTLVGGYASL 712
>gi|357166198|ref|XP_003580632.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
mitochondrial-like [Brachypodium distachyon]
Length = 644
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 21/187 (11%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
T +++T+ K G ++LF Y +++ C+ D+
Sbjct: 356 TALIDTMGKFGRENEAMLLFERMKASGLELDAITYGVIVNCLCRFGK---LDEAILCFRN 412
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
V + V S+I G + G +A+ L EEM+VKG P + Y +I G +
Sbjct: 413 CVEKG--IAVNAIFYTSLIDGFGKAGMVDQAQELFEEMKVKGFVPDSYCYNVLIDGLAKA 470
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G L+D + +ME DG +++ + H + W M D GI +
Sbjct: 471 GRLDDACALYKRMEDDGCDQTVYTYTIIIDGLFKKHKNEEAIKFW-NTMIDKGITPTAAA 529
Query: 297 YNSVLNS 303
+ + N
Sbjct: 530 FRTFANG 536
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 9/142 (6%)
Query: 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV------NSSSSVYVK 188
L + L + ++L+ Y +L+ SF S+ D QLV + +++
Sbjct: 115 LPNGADLAAHPQDLLNCYVSLLHSFAH--SREATPDAADHARQLVAELRARGDAVLMHLT 172
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+ S+I L +G E MR+ G+EPS Y C++ G GLL+ + +
Sbjct: 173 PPSSASLIRSLAALGLADELLWAWSAMRLAGVEPSRVTYNCLLDGLANAGLLDTAINVFD 232
Query: 249 QMES-DGTRVDTVCSNMVLSSY 269
M + D R D V N+++ Y
Sbjct: 233 AMSTEDRVRPDVVSYNILIKGY 254
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/117 (19%), Positives = 50/117 (42%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ + A +I LC+ G+P E + E M G Y +I G+ G + +
Sbjct: 315 IPQHAYVLVIGALCKEGKPFEGLAVFERMLKSGYPAKAAMYTALIDTMGKFGRENEAMLL 374
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M++ G +D + ++++ +L +L + + GI + Y S+++
Sbjct: 375 FERMKASGLELDAITYGVIVNCLCRFGKLDEAILCFRNCVEKGIAVNAIFYTSLIDG 431
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P LV + LD G+ + ILE L ++ S+ EL F C+ + S C + D
Sbjct: 247 DPTLVTYNV-MLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVISACGREGM--LD 303
Query: 170 DTYARLNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ L +L N V SM+ + G EA ++++EM P Y
Sbjct: 304 EARKFLAELKFNGYKPGTV---TYNSMLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYN 360
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ Y R G L++ +++ M S G + + V+ +YG + MKD
Sbjct: 361 ELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYGKAGREDDALRLFSLMKDL 420
Query: 289 GIPFSVRTYNSVL 301
G +V TYNSVL
Sbjct: 421 GCAPNVYTYNSVL 433
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C G EA ++ EM KG++P+ Y + GY + L ++ ++ M
Sbjct: 711 TVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEH 770
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
R + +++ Y + + ++ K+K+ I F ++ L SC
Sbjct: 771 NCRPSELTYKILVDGYCKAGKYEEAMDFVSKIKELDISFDDQSVKR-LGSC 820
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 64/149 (42%), Gaps = 7/149 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L + C+H RG + + +L + V + SM+S +A ++
Sbjct: 609 LTNHKCRH--LRGMERAFDQLQKYGYKPDLV-----VINSMLSMFARNKMFSKAREMLHF 661
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ GL+P+ F Y C++ Y R G E ++ +++ G D V N V+ +
Sbjct: 662 IHECGLQPNLFTYNCLMDLYVREGECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGL 721
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L +M GI ++ TYN+ L+
Sbjct: 722 MQEAIGVLSEMTTKGIQPTIVTYNTFLSG 750
Score = 39.3 bits (90), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +AE +++ ++ G EP Y +I G+ R GL+++ ++++M + G + V
Sbjct: 685 GECWKAEEVLKGIQNSGPEPDVVSYNTVIKGFCRKGLMQEAIGVLSEMTTKGIQPTIVTY 744
Query: 263 NMVLSSYG------DHNELSRMVL 280
N LS Y + NE+ R ++
Sbjct: 745 NTFLSGYAGMELFDEANEVIRFMI 768
>gi|255553476|ref|XP_002517779.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223543051|gb|EEF44586.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 486
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 121/282 (42%), Gaps = 20/282 (7%)
Query: 37 KQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFP 96
K+ RFL + A + KA S SK+ P+ + L AL D R A
Sbjct: 63 KELSRFLRTDAAIKAIEQKADS---SKYNRLWPKAV-LEALD-----DAIKERRWKSALK 113
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
++ + ++ W++ + +++ L K Q EEA L+ E + G R + Y L+
Sbjct: 114 IFELLRKQHWYEPRCQTYTKLLMMLGKCRQPEEAR-LLFEVMQTEGLRPT--IDVYTALV 170
Query: 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC-EMGQPHEAENLIEEM 215
++ + T + + + VY S++ +C ++ + ++ EM
Sbjct: 171 SAYGESGLLAKAFSTVDEMKSVSDCKPDVYTY-----SVLINICTKLHRFDLIGRILSEM 225
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMER-IVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
G+E S + II GYG+ + +ME + N +E + D N V+ +YG+
Sbjct: 226 SYLGVECSTVTFNTIINGYGKAKMFREMENSLTNMIEIGNSVPDLFTFNSVIGAYGNSGR 285
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
+ +M W + + GI ++T+N ++ S M + +NS
Sbjct: 286 IEKMEKWYNEFQLMGISPDIKTFNILIKSYGK-AGMYEKINS 326
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 202 MGQPHEAENLIE---EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
G+ + EN+ E M+ G++P+ Y ++ Y + GLL + I+ Q+E+ +D
Sbjct: 350 FGRAGDIENMDEYFKTMKHLGMKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLD 409
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
T N ++++YG ++ +M +M++
Sbjct: 410 TTFFNCIINAYGQAGDVDKMAELFLEMRE 438
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 54/109 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G + ++IE M+ + P+ Y II +GR G +E+M+ M+ G
Sbjct: 311 LIKSYGKAGMYEKINSVIEFMKKRFFPPTVVTYNIIIETFGRAGDIENMDEYFKTMKHLG 370
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + ++S+Y L ++ L+++++S + +N ++N+
Sbjct: 371 MKPNAITYCSLVSAYSKAGLLMKVNSILRQVENSDVVLDTTFFNCIINA 419
>gi|326494062|dbj|BAJ85493.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 567
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 78/156 (50%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVN----SSSSVYVKRQALKSMISGLCEMGQPHE 207
+ +I S C+ + +D L ++VN S+V+ +I+GL + G+ +
Sbjct: 370 FAAVIHSLCRM---KNVNDAKKLLMRMVNLGPAPGSAVF------NFVITGLSKEGEMED 420
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A++LI M +GL P + Y I+ GY + G++++ ++ + + + V ++++
Sbjct: 421 AKDLIRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIHPKPSRVTYHILIR 480
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y E + + L++MK+ G+ ++ YN ++ S
Sbjct: 481 GYCKMEEFEKALECLKEMKEDGLQPNMDEYNKLIQS 516
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
++ ++I LC M ++A+ L+ M G P + +I G + G +ED + ++
Sbjct: 368 KSFAAVIHSLCRMKNVNDAKKLLMRMVNLGPAPGSAVFNFVITGLSKEGEMEDAKDLIRV 427
Query: 250 MESDGTRVDTVCSNMVLSSYG 270
MES G R D ++++S Y
Sbjct: 428 MESRGLRPDVYTYSVIMSGYA 448
>gi|297828902|ref|XP_002882333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328173|gb|EFH58592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 506
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLC 200
G R V+ Y +I +C+ F Y L+++ N S + +++S L
Sbjct: 250 GHGFRPCVISYTTIIRCYCQQSE---FVKVYEMLSEMEANGSPPNSI---TYTTIMSSLN 303
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMESDGTRVDT 259
+ EA + M+ G +P Y C+I+ R G LE+ ER+ +M G ++T
Sbjct: 304 AQKEFEEALRVATRMKRSGCQPDSLFYNCLIHTLARSGRLEEAERVFRVEMPELGVSINT 363
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI--PFSVRTYNSVLNSC 304
N +++ Y H+E + + L++M+ S + P V TY +L SC
Sbjct: 364 STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNP-DVHTYQPLLRSC 409
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 17/194 (8%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
+A+I+ G+ EEA I + L + G + + L+D+ CK
Sbjct: 156 IAKIMRRFAGAGEWEEA-VGIFDKLGEFGLEKNTESMNL--LLDTLCKE----------K 202
Query: 174 RLNQ----LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
R+ Q L+ S + I G C+ + EA I+EM+ G P Y
Sbjct: 203 RVEQARVVLLELKSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTT 262
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
II Y + + ++++ME++G+ +++ ++SS E + +MK SG
Sbjct: 263 IIRCYCQQSEFVKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSG 322
Query: 290 IPFSVRTYNSVLNS 303
YN ++++
Sbjct: 323 CQPDSLFYNCLIHT 336
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID FCK D + +++V S+ V ++I GL + G+ A +
Sbjct: 222 YNTLIDGFCKKKDLVAAKDVF---DKMVRSNCVPNV--VTYTTLIDGLSKSGKVQAAAEV 276
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ M KG+ P+ Y C+I G+ ++ +++ +++ QM + G V N++L+S
Sbjct: 277 LDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCR 336
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++L + M +V TYN++L +
Sbjct: 337 ADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRA 368
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 10/154 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPHEAE 209
Y LI CK + FD+ Y +L+++ KR+A+ ++I+ LC++ + EA
Sbjct: 48 YGILISCLCKVGN---FDEAY----KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEAR 100
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
LIE+M + P Y I+ + ++D V +M + G + D N VLS
Sbjct: 101 ELIEKM-ARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGL 159
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ L +KM I +V TYN+++N
Sbjct: 160 CQEEKVEEARLLFEKMVKQRINPNVVTYNTLING 193
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 13/191 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II +L K + EEA LI E +++ + L Y +++ CK +KR DD A +
Sbjct: 86 IINWLCKLNRVEEARELI-EKMARYAPPD---ALTYGPIVERLCK--TKR-IDDALATVE 138
Query: 177 QLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++ +K A ++SGLC+ + EA L E+M + + P+ Y +I G
Sbjct: 139 EMATRG----IKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGL 194
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ +E + +M G V N ++ + +L KM S +V
Sbjct: 195 CKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNV 254
Query: 295 RTYNSVLNSCS 305
TY ++++ S
Sbjct: 255 VTYTTLIDGLS 265
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 42/239 (17%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
EE ++ N + + +I+ L K+G+ EEA TL + +++ G R ++ Y +ID C+
Sbjct: 354 EERGYRLNQHIYSVLISGLFKEGKAEEAMTL-WKKMAEKGCRPN--IVVYSAVIDGLCRE 410
Query: 163 DSKRGFDDTYARLNQLVNSSS--SVYVKRQALKS-------------------------- 194
++ LN +++S +VY +K
Sbjct: 411 GKP---NEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNE 467
Query: 195 -----MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+I GLC +G+ EA + +M G++P Y +I G +G ++ ++ ++
Sbjct: 468 FCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHE 527
Query: 250 M---ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
M E ++ D V N++L ++SR V L M D G V T N+ LN+ S
Sbjct: 528 MLCQEEPKSQPDVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLS 586
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G+P+EA+ ++ M G P+ + Y ++ G+ + GL E+ ++ +M+
Sbjct: 402 AVIDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDET 461
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G + C ++++ + ++ KM GI Y+S++ I SM
Sbjct: 462 GCSRNEFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSM 518
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 92/226 (40%), Gaps = 64/226 (28%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
L+++ L KLG +R + +F YC L+D CK + D+ L++
Sbjct: 191 NLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEER---IDEAVLLLDE 247
Query: 178 L----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + S +Y +I GLC+ G L++ M +KG P+ Y +I+G
Sbjct: 248 MQSEGCSPSPVIY------NVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHG 301
Query: 234 ----------------------------YGRL--GLLE-----DMERIVNQMESDGTRVD 258
YG L GL++ D R++ ME G R++
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLN 361
Query: 259 TVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++++S + + M LW +KM + G ++ Y++V++
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMTLW-KKMAEKGCRPNIVVYSAVIDG 406
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D CK+ D A L + S++ Q +I G+C G+ +A +L
Sbjct: 430 LLDYLCKNCH---LDKAMALLKAI--EGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSN 484
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
+ KGL+P+ + Y + +G + GLL++ ++ +M+ + D N + + +NE
Sbjct: 485 LSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNNE 544
Query: 275 LSRMVLWLQKMKDSGIPFSVRT 296
SR + L++M G V T
Sbjct: 545 TSRAIQLLEEMLARGFSCDVST 566
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 111/259 (42%), Gaps = 15/259 (5%)
Query: 47 ALAVTRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
+L R A L S+ + SP + N+L + L +++L + +
Sbjct: 223 SLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMV-----D 277
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S N + ++ L K+G +A ++ + + + G V+ Y LID C
Sbjct: 278 SKIMPNAISLTTVVDALCKEGMVAQAHDVV-DMMFQSGVEPD--VVTYTALIDGHCL--- 331
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ D+ + +V+ + V + ++I+G C++ + +A L EEM + L P+
Sbjct: 332 RSEMDEAVKVFDMMVHKGCAPNVF--SYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNT 389
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I+G +G L+D + +M + G D V ++L + L + + L+
Sbjct: 390 VTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKA 449
Query: 285 MKDSGIPFSVRTYNSVLNS 303
++ S + ++ Y V++
Sbjct: 450 IEGSNLDPDIQIYTIVIDG 468
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 66/158 (41%), Gaps = 11/158 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLV---NSSSSVYVKRQALKSMISGLCEMGQP 205
V+ Y LI+ CK G RL + + N V V ++I LC+ Q
Sbjct: 179 VVIYATLINGLCK----TGHTSAAIRLLRSMEKGNCQPDVVV----YGTLIHSLCKDRQQ 230
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
+A NL EM KG+ P+ ++Y LG + + ++N+M + + V
Sbjct: 231 TQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTV 290
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +++ + M SG+ V TY ++++
Sbjct: 291 VDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328
>gi|356530135|ref|XP_003533639.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g01970-like [Glycine max]
Length = 356
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 129/301 (42%), Gaps = 28/301 (9%)
Query: 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFI-ALNALSHLLSPD-----TTHP 88
+TK+ Q+ +S L + SKA R I F A L + L+ P +
Sbjct: 26 VTKEQQQAISKLPFRMADRSKALMRQIICFSAEKGTISDLLRSWVKLMKPTRADWLSVLK 85
Query: 89 RLSSLAFPLYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR 144
L + P Y+ + + E F+ N + +II + + E+AE + TL K
Sbjct: 86 ELRTTEHPFYLEVAKHTLLEESFEVNIRDYTKIIHYYGEHNLLEDAEKFL--TLMK---- 139
Query: 145 ERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203
+R + Y +I + H SK G D + + KR + SMI G
Sbjct: 140 QRGFI--YDQVILTTMVHMSSKAGNHDRAKEYFEEIKLLGEPLDKR-SYGSMIMAYIRAG 196
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRVDTVCS 262
P E ENL+++M + + YK ++ Y +G E +R+ + ++ G T D +CS
Sbjct: 197 MPEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGNAEGAQRVFDAIQLAGITPDDKICS 256
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIMSMLQDLNS 316
+++++Y + + ++ + M+ +GI S + SVL + +T + L DL
Sbjct: 257 -LLVNAYAMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKESKINTALEFLIDLER 315
Query: 317 N 317
+
Sbjct: 316 D 316
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N L H L R+S A L+ ++ + + + ++ L ++G+
Sbjct: 48 PTLVTFNTLLHGLC---VEDRVSE-ALDLFHQMCKPNVVTF-----TTLMNGLCREGRVV 98
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA L L+ + + G + ++ Y ++D CK DT + LN L ++K
Sbjct: 99 EAVAL-LDRMVEDGLQPNQIT--YGTIVDGMCK------MGDTVSALNLLRKMEELSHIK 149
Query: 189 RQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ ++I GL + G+ +A+NL EM+ KG+ P Y C+I G+ G + +R+
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M D V + ++++ +L+ LQ+M SG+ +V T N++L+
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI--LETLSKLGSRERELVLF 151
A L R+ E+ Q N I+ + K G A L+ +E LS + + V+
Sbjct: 100 AVALLDRMVEDG-LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHI----KPDVVI 154
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID K + + + ++ MI+G C G+ EA+ L
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQD-----KGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++EM V+ + P + +I + G L + ++ +M S G + V N +L D
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269
Query: 272 HNELSRMVLWLQKMKDS-----------GIPFSVRTYNSVLNS 303
+L + + M+ S G+ V+TYN +++
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 164 SKRGFDDTYARLNQLVNS-------SSSVYVKRQALK-------SMISGLCEMGQPHEAE 209
+K GF T N L++ S ++ + Q K ++++GLC G+ EA
Sbjct: 42 TKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAV 101
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-DGTRVDTVCSNMVLSS 268
L++ M GL+P+ Y I+ G ++G ++ +ME + D V + ++
Sbjct: 102 ALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDG 161
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G H + + + +M+D GI + TY+ ++N CS+
Sbjct: 162 LWKDGRHTDAQNLFI---EMQDKGIFPDIVTYSCMINGFCSS 200
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 11/192 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARL 175
+I L K+G A+ L+ E +S + CN L+D C + + + +
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPN----VVTCNTLLDGLCDSGKLKDALEMFKAM 283
Query: 176 NQ------LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ + V Q +ISGL G+ EAE L EEM +G+ P Y
Sbjct: 284 QKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSS 343
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I G + L++ ++ + M S + V N +++ Y + + +M G
Sbjct: 344 MINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRG 403
Query: 290 IPFSVRTYNSVL 301
I + TY +++
Sbjct: 404 IVANAITYITLI 415
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+GLC+ + EA + + M K P+ + +I GY + G+++D + +M
Sbjct: 343 SMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR 402
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + ++ + ++ + Q+M SG+
Sbjct: 403 GIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGV 439
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + + +AE + EMR KG+ P F Y +I G+ +LG ++ I ++M +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + NM+L + E+ + L +M G+ + TY ++++
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C G+ +A+ L++EM VKGL P+ Y II GY + G L + R+ ++M+ G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D+ ++ N++ R + K G S +N+++N
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALIN 774
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + + QA S+I G C + L+ EM+ + + S + Y ++ G G L+
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
IV +M + G R + V ++ ++ ++ + L++MK+ GI + YNS++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G ++G +A ++ +EM +GL P+ Y ++ G+ R G +E + ++++M G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V ++ Y +L+ +MK G+ Y ++++ C
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P ++ + G + A ++ E ++ S R V+ Y LI +F ++ F
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIA---SGCRPNVVIYTTLIKTFLQNSR---FG 469
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D L ++ + S+I GL + + EA + + EM GL+P+ F Y
Sbjct: 470 DAMRVLKEM--KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I GY ++ V +M G + V +++ Y ++ + M D G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587
Query: 290 IPFSVRTYNSVLNS 303
I +TY ++N
Sbjct: 588 ILGDAKTYTVLMNG 601
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++I G C+ G EA L +EM++KGL P F Y ++ G R L D+ER +
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR---LNDVERAI 752
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
LN+L++ S + K + MI LC+ G A+ L +M+ L P+ Y ++
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN 848
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KD 287
GY ++G +M + ++ + G D + +++++++ ++ ++ + +M D
Sbjct: 849 GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
Query: 288 SGIPFSVRTYNSVLNSCSTIMSM 310
G S+ T ++L+ + + M
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEM 931
>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 472
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G+P EA+ + EM+ KG P+ F Y +++GY G + + +M +
Sbjct: 215 ALIDGLCREGKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDN 274
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VC +++++ + +L ++ ++M GI V Y+S+++
Sbjct: 275 DCNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHG 324
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 100/243 (41%), Gaps = 35/243 (14%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC-- 160
EE ++ N + +I+ L K+G+ E L E + K G + +V Y LID C
Sbjct: 167 EEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEK-GCKPNTIV--YSALIDGLCRE 223
Query: 161 -KHDSKRGF------------DDTYARLNQLVNSSSSVYVKRQALKSM------------ 195
K D + + TY+ L + ++ K M
Sbjct: 224 GKPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 283
Query: 196 ---ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
I+GLC+ G+ EA + ++M +G++ Y +I+G+ L+E ++ NQM
Sbjct: 284 SILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLC 343
Query: 253 DGTRV--DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
++ D V N++L+++ N +SR + L M D G T + L + M
Sbjct: 344 HNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDP 403
Query: 311 LQD 313
QD
Sbjct: 404 PQD 406
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 55/112 (49%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ LC +G +A + M + G+ Y +++G G +++ ++++M+
Sbjct: 3 LIPIVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQ 62
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+GT + V N+++S+ +LSR + M G + TYNS+++
Sbjct: 63 VEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHG 114
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 53/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +IS LC+ G A L++ M +KG P+ Y +++G G L+ ++N+M
Sbjct: 72 AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRM 131
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + + ++ + H V L +++ G + +Y+S+++
Sbjct: 132 VANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISG 184
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 110/237 (46%), Gaps = 20/237 (8%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N L H L R+S A L+ ++ + + + ++ L ++G+
Sbjct: 48 PTLVTFNTLLHGLC---VEDRVSE-ALDLFHQMCKPNVVTF-----TTLMNGLCREGRVV 98
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
EA L L+ + + G + ++ Y ++D CK DT + LN L ++K
Sbjct: 99 EAVAL-LDRMVEDGLQPNQIT--YGTIVDGMCK------MGDTVSALNLLRKMEELSHIK 149
Query: 189 RQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ ++I GL + G+ +A+NL EM+ KG+ P Y C+I G+ G + +R+
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M D V + ++++ +L+ LQ+M SG+ +V T N++L+
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDG 266
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 23/223 (10%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI--LETLSKLGSRERELVLF 151
A L R+ E+ Q N I+ + K G A L+ +E LS + + V+
Sbjct: 100 AVALLDRMVEDG-LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHI----KPDVVI 154
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID K + + + ++ MI+G C G+ EA+ L
Sbjct: 155 YSAIIDGLWKDGRHTDAQNLFIEMQD-----KGIFPDIVTYSCMINGFCSSGKWSEAQRL 209
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++EM V+ + P + +I + G L + ++ +M S G + V N +L D
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269
Query: 272 HNELSRMVLWLQKMKDS-----------GIPFSVRTYNSVLNS 303
+L + + M+ S G+ V+TYN +++
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISG 312
Score = 41.2 bits (95), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 74/162 (45%), Gaps = 22/162 (13%)
Query: 164 SKRGFDDTYARLNQLVNS-------SSSVYVKRQALK-------SMISGLCEMGQPHEAE 209
+K GF T N L++ S ++ + Q K ++++GLC G+ EA
Sbjct: 42 TKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQMCKPNVVTFTTLMNGLCREGRVVEAV 101
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-DGTRVDTVCSNMVLSS 268
L++ M GL+P+ Y I+ G ++G ++ +ME + D V + ++
Sbjct: 102 ALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDG 161
Query: 269 Y---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G H + + + +M+D GI + TY+ ++N CS+
Sbjct: 162 LWKDGRHTDAQNLFI---EMQDKGIFPDIVTYSCMINGFCSS 200
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 11/192 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARL 175
+I L K+G A+ L+ E +S + CN L+D C + + + +
Sbjct: 228 LINALVKEGDLNSAQDLLQEMISSGVCPN----VVTCNTLLDGLCDSGKLKDALEMFKAM 283
Query: 176 NQ------LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ + V Q +ISGL G+ EAE L EEM +G+ P Y
Sbjct: 284 QKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSS 343
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I G + L++ ++ + M S + V N +++ Y + + +M G
Sbjct: 344 MINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRG 403
Query: 290 IPFSVRTYNSVL 301
I + TY +++
Sbjct: 404 IVANAITYITLI 415
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 46/97 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+GLC+ + EA + + M K P+ + +I GY + G+++D + +M
Sbjct: 343 SMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRR 402
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + ++ + ++ + Q+M SG+
Sbjct: 403 GIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGV 439
>gi|449444614|ref|XP_004140069.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
gi|449528063|ref|XP_004171026.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
mitochondrial-like [Cucumis sativus]
Length = 536
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 154 NLIDSFCKHDSKRGFDDTY----ARLNQLVNSS--------------SSVYVKRQALKSM 195
N D+FC+ GF T A L+ L+N S S +Y L +
Sbjct: 186 NASDTFCRMKD-YGFLPTVESCNAYLSSLLNFSRGDIALAFYREMRRSRIYPNSYTLNLV 244
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I C++G+ +A + EEM G P+ Y +I GY GLL ++ + ME +G
Sbjct: 245 ICACCKLGRLDKANVVFEEMGTMGFSPNVASYNTLIAGYCNKGLLSSAMKLRSVMEKNGV 304
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D V N +++ + +L +MK + + TYN ++N S
Sbjct: 305 PPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILINGYS 354
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 103/249 (41%), Gaps = 17/249 (6%)
Query: 61 ISKFVASSPQFIALNALSHLLSPDTTHPRLSSL--------AFPLYMRITEESWFQWNPK 112
+ KF +S F + L + ++ + LSSL A Y R S N
Sbjct: 181 LKKFRNASDTFCRMKDYGFLPTVESCNAYLSSLLNFSRGDIALAFY-REMRRSRIYPNSY 239
Query: 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172
+ +I K G+ ++A ++ E + +G V Y LI +C +G +
Sbjct: 240 TLNLVICACCKLGRLDKA-NVVFEEMGTMGFSPN--VASYNTLIAGYCN----KGLLSSA 292
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+L V + V ++++G C++G+ EA L EM+ L P+ Y +I
Sbjct: 293 MKLRS-VMEKNGVPPDVVTFNTLVNGFCKVGKLQEASKLFGEMKGMSLSPTTVTYNILIN 351
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
GY + G E R+ +M + D + N ++ + + ++++ + G+
Sbjct: 352 GYSKAGNCEMGNRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVP 411
Query: 293 SVRTYNSVL 301
+ T+++++
Sbjct: 412 NASTFSALI 420
Score = 38.5 bits (88), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 176 NQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
N+L S VK L ++I GLC+ G+ +A L+ E+ KGL P+ + +IYG
Sbjct: 363 NRLFEEMSRFQVKADILTYNALILGLCKEGKTKKAAYLVRELDEKGLVPNASTFSALIYG 422
Query: 234 YGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
E +I M +S T D M+LS++ ++ + V L++M
Sbjct: 423 QCVQKQSERAFQIYKSMIKSSFTPCDQT-FRMLLSTFCENEDYDGAVQLLEEM 474
>gi|224576659|gb|ACN57003.1| At1g03560-like protein [Capsella grandiflora]
gi|224576663|gb|ACN57005.1| At1g03560-like protein [Capsella grandiflora]
Length = 207
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRFNGXAINSXFYSSLIDG 101
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + + +AE + EMR KG+ P F Y +I G+ +LG ++ I ++M +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + NM+L + E+ + L +M G+ + TY ++++
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C G+ +A+ L++EM VKGL P+ Y II GY + G L + R+ ++M+ G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D+ ++ N++ R + K G S +N+++N
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALIN 774
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + + QA S+I G C + L+ EM+ + + S + Y ++ G G L+
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
IV +M + G R + V ++ ++ ++ + L++MK+ GI + YNS++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G ++G +A ++ +EM +GL P+ Y ++ G+ R G +E + ++++M G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V ++ Y +L+ +MK G+ Y ++++ C
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P ++ + G + A ++ E ++ S R V+ Y LI +F ++ F
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIA---SGCRPNVVIYTTLIKTFLQNSR---FG 469
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D L ++ + S+I GL + + EA + + EM GL+P+ F Y
Sbjct: 470 DAMRVLKEM--KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I GY ++ V +M G + V +++ Y ++ + M D G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQG 587
Query: 290 IPFSVRTYNSVLNS 303
I +TY ++N
Sbjct: 588 ILGDAKTYTVLMNG 601
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++I G C+ G EA L +EM++KGL P F Y ++ G R L D+ER +
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR---LNDVERAI 752
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
LN+L++ S + K + MI LC+ G A+ L +M+ L P+ Y ++
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN 848
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KD 287
GY ++G +M + ++ + G D + +++++++ ++ ++ + +M D
Sbjct: 849 GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
Query: 288 SGIPFSVRTYNSVLNSCSTIMSM 310
G S+ T ++L+ + + M
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEM 931
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + + +AE + EMR KG+ P F Y +I G+ +LG ++ I ++M +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + NM+L + E+ + L +M G+ + TY ++++
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C G+ +A+ L++EM VKGL P+ Y II GY + G L + R+ ++M+ G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D+ ++ N++ R + K G S +N+++N
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALIN 774
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + + QA S+I G C + L+ EM+ + + S + Y ++ G G L+
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
IV +M + G R + V ++ ++ ++ + L++MK+ GI + YNS++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Score = 47.4 bits (111), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G ++G +A ++ +EM +GL P+ Y ++ G+ R G +E + ++++M G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V ++ Y +L+ +MK G+ Y ++++ C
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P ++ + G + A ++ E ++ S R V+ Y LI +F ++ F
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIA---SGCRPNVVIYTTLIKTFLQNSR---FG 469
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D L ++ + S+I GL + + EA + + EM GL+P+ F Y
Sbjct: 470 DAMRVLKEM--KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I GY ++ V +M G + V +++ Y ++ + M D G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587
Query: 290 IPFSVRTYNSVLNS 303
I +TY ++N
Sbjct: 588 ILGDAKTYTVLMNG 601
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++I G C+ G EA L +EM++KGL P F Y ++ G R L D+ER +
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR---LNDVERAI 752
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
LN+L++ S + K + MI LC+ G A+ L +M+ L P+ Y ++
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN 848
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KD 287
GY ++G +M + ++ + G D + +++++++ ++ ++ + +M D
Sbjct: 849 GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
Query: 288 SGIPFSVRTYNSVLNSCSTIMSM 310
G S+ T ++L+ + + M
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEM 931
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC G+ E+ NL++ M+ KGL P + Y +I + R G L+ ++ M DG
Sbjct: 226 LISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDG 285
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D V N ++++ + V K+ + G P +V +YN++L++
Sbjct: 286 FLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSA 334
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G EA L++EM +GLEP F Y I G + G ++ V + S G + D +
Sbjct: 129 GGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITY 188
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++L + + + W+ ++ G +V TY+ +++S
Sbjct: 189 NILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISS 229
>gi|145334827|ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g57250, mitochondrial; Flags: Precursor
gi|332009488|gb|AED96871.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 971
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + G EA L+ +M +G+EP+ Y II G ++G LE+ + N++ S G
Sbjct: 283 LIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVG 342
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VD ++ L+R L M+ GI S+ TYN+V+N
Sbjct: 343 IEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVING 391
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY-----GYGRLGLLEDMERIVN 248
+++S LC++G+ E +L V+ LE GFE+ C+ Y GY + G L D
Sbjct: 212 TLVSALCQLGKVDEVRDL-----VRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDR 266
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M G D V ++++ + + L KM G+ ++ TY +++
Sbjct: 267 EMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAII 319
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G +AE L++ M KGL P+ Y I+ GY +LG ED R+V++
Sbjct: 731 LIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGR 790
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D + ++ Y ++ + + KD I
Sbjct: 791 VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNI 826
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
L +C+LI F + K D+ L + N + + ++ISG C++G+P A
Sbjct: 135 LTFCSLIYRFVE---KGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELAL 191
Query: 210 NLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E G L P+ Y ++ +LG ++++ +V ++E +G D V + +
Sbjct: 192 GFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHG 251
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y L ++ ++M + G+ V +Y+ +++ S
Sbjct: 252 YFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLS 288
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ CK GF L S V + S+I+GLC+ G EA
Sbjct: 655 VIDYTIIINGLCKE----GFLVKALNLCSFAKSRG-VTLNTITYNSLINGLCQQGCLVEA 709
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + + GL PS Y +I + GL D E++++ M S G + + N ++
Sbjct: 710 LRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 769
Query: 269 Y 269
Y
Sbjct: 770 Y 770
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV----LFYCNLIDSFCKHDSKRGFDDTY 172
+I L K+G EEA L LG +E V + Y +I CK ++ +
Sbjct: 283 LIDGLSKEGNVEEA-------LGLLGKMIKEGVEPNLITYTAIIRGLCKMGK---LEEAF 332
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
N+++ S + V ++I G+C G + A +++ +M +G++PS Y +I
Sbjct: 333 VLFNRIL--SVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 390
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G + + + + S G D + + +L SY + ++ ++ ++ IP
Sbjct: 391 GLCMAGRVSEADEV-----SKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPM 445
Query: 293 SVRTYNSVLNS 303
+ N +L +
Sbjct: 446 DLVMCNILLKA 456
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 70/149 (46%), Gaps = 5/149 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+ + CK D K D LNQL + S + ++I GL ++G+ A
Sbjct: 419 IVTYNTLLTALCK-DGKA--DAAVEILNQLSSKGCSPVL--ITYNTVIDGLTKVGKTEYA 473
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+EEMR KGL+P Y ++ G G G +++ +I + ME + V N ++
Sbjct: 474 AELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLG 533
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ SR + +L M + G + TY
Sbjct: 534 LCKAQQTSRAIDFLAYMVEKGCKPTKATY 562
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 28/209 (13%)
Query: 116 EIIAFLDKQGQREEAETLILETL--------SKLGSREREL-----------VLFYCNLI 156
E + LD+Q QRE +I T+ S +G + L V+ Y LI
Sbjct: 227 EAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLI 286
Query: 157 DSFCKHDSKRGFDDTYARLNQ--LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+ CK D+ LN L +V L+SM C G+ +AE L+ +
Sbjct: 287 NGICKEGR---LDEAIKFLNNMPLYGCQPNVITHNIILRSM----CSTGRWMDAERLLAD 339
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M KG PS + +I R LL ++ +M G +++ N +L + +
Sbjct: 340 MLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKK 399
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ R + +L+ M G + TYN++L +
Sbjct: 400 MDRAIEYLEIMVSRGCYPDIVTYNTLLTA 428
>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
Length = 454
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 58/110 (52%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y +++GY G L +M ++ M +
Sbjct: 117 SLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQN 176
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G ++D N+++ +Y ++ +VL KM+ G+ + Y +V++
Sbjct: 177 GMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDG 226
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y +LI + C +D ++ + + L+Q +N + + +++ LC+ G+ E
Sbjct: 252 VVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFF------NTILDSLCKEGRVIE 305
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
++ L + + G+ P Y +I GY G ++ +++ M S G + D+V + +++
Sbjct: 306 SKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLIN 365
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y N + + ++M+ +G+ + TYN +L+
Sbjct: 366 GYCKINRMEDALALFKEMESNGVNPDIITYNIILHG 401
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)
Query: 110 NPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
NP +V I+ L K+G+ E++ L + L +G V+ Y LID +C G
Sbjct: 284 NPNIVFFNTILDSLCKEGRVIESKKL-FDLLGHIGVNPD--VITYSTLIDGYCLAGKMDG 340
Query: 168 FDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+L+ SV +K ++ ++I+G C++ + +A L +EM G+ P
Sbjct: 341 -------AMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDII 393
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
Y I++G R + + ++ GT+++ N++L + N L
Sbjct: 394 TYNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSL 443
>gi|299473436|emb|CBN77833.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 1139
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 60/116 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
QA+ S+I+ + G P +A + ++M G+ PS + +I GR G ++ ++ ++
Sbjct: 165 QAINSLINAFAKAGSPDQALKVFDQMSRYGVTPSVITFNTLIDACGRAGDIDRARQVFSR 224
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ G + + ++ S+ ++ WLQ+M+ G+ + TY++++N+C
Sbjct: 225 LSQAGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRARGLEPNRVTYSALINACG 280
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 97/229 (42%), Gaps = 17/229 (7%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
+ R E+ + + + +I K G ++A + + +S+ G V+ + LID
Sbjct: 151 FFREMLEAGITPDVQAINSLINAFAKAGSPDQA-LKVFDQMSRYGVTPS--VITFNTLID 207
Query: 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV 217
+ + ++RL+Q + + + ++I GQ EA + ++EMR
Sbjct: 208 ACGRAGDIDRARQVFSRLSQ-----AGLSPNDRTFSALIHSHAVQGQVDEAFSWLQEMRA 262
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
+GLEP+ Y +I GR G L + +++M G + V ++ + G EL
Sbjct: 263 RGLEPNRVTYSALINACGRAGQLARAFQTLDEMFGTGIEPNVVTWTTLIDACGKGKELEW 322
Query: 278 MVLWLQKMKDSG-IPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325
++M++ G +P V +CS +M + D ++LE
Sbjct: 323 SFKLFKEMRERGTVPNGV--------TCSALMDACLKADELDLAFAVLE 363
>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
Length = 641
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C+ G A L E+++KG P+ Y II G+ + G + ++R++ +M S
Sbjct: 225 TLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSR 284
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSC 304
G V+ N ++ + H + + V ++ M + G + TYN+++ SC
Sbjct: 285 GLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISGSC 336
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISG C G+ EA+ L+E+ KGL P+ F Y +I+ Y + G + + +M
Sbjct: 330 TLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTER 389
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G + D V ++ E+ + +KM + G+ YN +++ +
Sbjct: 390 GHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKL--- 446
Query: 314 LNSNDFPLSILELTEVLNEE---EVSVVKELEDSSV----LDEAMK 352
P + L L E+L++ + V L D + LDEA K
Sbjct: 447 ------PAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARK 486
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 82/209 (39%), Gaps = 15/209 (7%)
Query: 100 RITEESWFQW---NPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCN 154
++ E+ W Q N +I K+G E A L +E K L + E Y
Sbjct: 206 KLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVET-----YGA 260
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+I+ FCK + D +N S + V Q ++I + G +A IE
Sbjct: 261 IINGFCKKGDFKAIDRLLMEMN-----SRGLTVNVQVYNTIIDARYKHGHIVKAVETIEG 315
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G +P Y +I G R G + + ++++ Q G + ++ +Y
Sbjct: 316 MIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGG 375
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R WL +M + G + TY ++++
Sbjct: 376 YDRASNWLIEMTERGHKPDLVTYGALVHG 404
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
L+Q V + VY +++ G G EA L E KG+ P Y +I GY
Sbjct: 457 LDQSVLPDAFVYA------TLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGY 510
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS---RMVLWLQKMK 286
+ G+++D +N+M+ D + V+ Y ++L +M + KMK
Sbjct: 511 CKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMK 565
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
K ++ L K+G+ EE LI + + G ++FY LID +CK +
Sbjct: 186 KFTCIMVKGLCKEGKLEEGRKLIED---RWGQGCIPNIIFYNTLIDGYCKKGDMEMANGL 242
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ L +L +V + ++I+G C+ G + L+ EM +GL + Y II
Sbjct: 243 FIEL-KLKGFLPTV----ETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTII 297
Query: 232 ---YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
Y +G +++ +E I +E G + D V N ++S ++S L++
Sbjct: 298 DARYKHGH--IVKAVETIEGMIEC-GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGK 354
Query: 289 GIPFSVRTYNSVLNS 303
G+ + +Y ++++
Sbjct: 355 GLMPNKFSYTPLIHA 369
>gi|206575136|gb|ACI14438.1| Os01g67210-like protein [Triticum urartu]
Length = 358
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ +I S C+ + + R+ L + S +I+GL + G+ +A+++
Sbjct: 161 FAAVIHSLCRMKNVKDAKKLLMRMVNLGPAPGSA-----VFNFVITGLSKEGEMEDAKDM 215
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I M +GL P + Y I+ GY + G++++ ++ + + +++ V ++++ Y
Sbjct: 216 IRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIYRKLNRVTYHILIRGYCK 275
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + + L++MK G+ +V YN ++ S
Sbjct: 276 MEEFEKALECLKEMKKDGVQPNVDEYNKLIQS 307
>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 95/198 (47%), Gaps = 18/198 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP V +I L K G+ E+A E +I E LS G+ + Y +LI S C D
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP-GN------IVYNSLIHSLCIFD 458
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P+
Sbjct: 459 K---WDKAKELILEMLDRG--ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPN 513
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ +++ M S G + D V N +++ Y + + ++ +
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 284 KMKDSGIPFSVRTYNSVL 301
+M+ SG+ + TYN +L
Sbjct: 574 EMESSGVSPDIITYNIIL 591
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y ++ GY G L +M +++ M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + ++++ +Y ++ + +L KM+ G+ TY +V+
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ F K D Y +++++ + S+I+ LC+ +A
Sbjct: 199 VVSYTTVINGFFKEGD---LDKAYGTYHEMLDRG--ILPNVVTYNSIIAALCKAQAMDKA 253
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ M G+ P+ Y I++GY G ++ + +M SDG D V N ++
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 3/115 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
++ GLC+ + EA L++ M G + P Y +I G+ + G L+ ++M
Sbjct: 168 LLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLD 227
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + V N ++++ + + + L M +G+ + RTYNS+++ CS+
Sbjct: 228 RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSS 282
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---KHDSKRGFDDTYARLNQLV 179
K+G+ E+E L + + ++G + ++ Y LID +C K D +L+
Sbjct: 491 KEGRVIESEKL-FDLMVRIGVKPN--IITYSTLIDGYCLAGKMDEA----------TKLL 537
Query: 180 NSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
S SV +K + ++I+G C++ + +A L EM G+ P Y I+ G +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + + GT+++ N++L +N + Q + + + RT+
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 298 NSVLNS 303
N ++ +
Sbjct: 658 NIMIGA 663
Score = 37.7 bits (86), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 31/159 (19%), Positives = 67/159 (42%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ Y +L+D CK+ ++++ FD R + + +++ G G
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMTKR---------GLKPEITTYGTLLQGYATKGA 354
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
E L++ M G+ P+ + + +I Y + G ++ + ++M G DTV
Sbjct: 355 LVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGT 414
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
V+ + + + ++M D + YNS+++S
Sbjct: 415 VIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 11/132 (8%)
Query: 164 SKRGFDDTYARL-----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
SK+G+ D L N +N +Y +I +C+ G+ +A L ++ VK
Sbjct: 156 SKQGYLDQALELFREMQNNYLNPDLVIY------NILIDAMCKSGKLEDARELFLKLHVK 209
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL P + II G R GLL++ + QME DG D N+++ + +N SR
Sbjct: 210 GLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVRGFLQNNGASRA 269
Query: 279 VLWLQKMKDSGI 290
Q+M D G
Sbjct: 270 EQLFQEMFDRGF 281
Score = 42.7 bits (99), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ LC+ G+ EA+ +++ M KG+EP+ Y ++ GY + + ++ N M + G
Sbjct: 16 LVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITRG 75
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N++++ + +M G+ + TYN++L
Sbjct: 76 CIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGG 124
>gi|357453513|ref|XP_003597034.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355486082|gb|AES67285.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 302
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 56/109 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ G+ A+++I M G++P Y +IYGY +G ++ + ++ + M S
Sbjct: 104 TLIQSLCKEGKLQVAKSIIPRMLRLGIKPDIVSYNSLIYGYCLIGEMDAVRKLFDNMHSI 163
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + + Y + + + L L KM+ +G+ + YN + N
Sbjct: 164 GIELDLSSYITLFNGYFNRRMVDDVSLLLLKMRSTGLMPDLHVYNYIFN 212
>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
Length = 600
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 83/187 (44%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+IA K+G R EA + + + K G R + + +LI CK+ + + +
Sbjct: 225 VIALYCKKGMRYEA-MCVRDRMDKEGIRADTVT--WNSLIHGLCKYGRVKEAAQLFTEMA 281
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ +V ++I G C G EA L EM G+ P Y I+
Sbjct: 282 AAQATPDNV-----TYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCE 336
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G ++++ +++N+M+ + D V N ++++Y ++ +KM +SG+ + T
Sbjct: 337 DGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFT 396
Query: 297 YNSVLNS 303
Y ++++
Sbjct: 397 YKALIHG 403
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 47/103 (45%)
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
L + +PH+A + ++MR +GL P ++ R + R+ ++M G V
Sbjct: 124 LAQSARPHDALRVFDQMRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAVS 183
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
T N +L + +R + +M +G+P +YN+V+
Sbjct: 184 THVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVI 226
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI FCK + D+ Q+V++ S ++ G C+ +
Sbjct: 397 YKALIHGFCK---AKELDEAKEAFFQMVDAGFSP--NYSVFSWLVDGFCKKNNADAVLLI 451
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+E+ +GL P Y+ +I R GL++ +++ +QM+S G D++ + +Y
Sbjct: 452 PDELMKRGLPPDKAVYRSLIRRLCRKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYTYLT 511
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L M + + + + YN + S
Sbjct: 512 EGKPVAASNTLDGMAKNQLYITPQIYNCLCTS 543
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 84/223 (37%), Gaps = 38/223 (17%)
Query: 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS---- 164
WN +I L K G+ +EA L E + + + + Y LID +C+ +
Sbjct: 257 WN-----SLIHGLCKYGRVKEAAQLFTEMAAAQATPDN---VTYTTLIDGYCRAGNIEEA 308
Query: 165 ------------------------KRGFDDTYARLNQLVN--SSSSVYVKRQALKSMISG 198
K D +NQL+N V ++I+
Sbjct: 309 VKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKVQADHVTCNTLINA 368
Query: 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD 258
C+ G A + ++M GL+ + F YK +I+G+ + L++ + QM G +
Sbjct: 369 YCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKEAFFQMVDAGFSPN 428
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++ + N ++L ++ G+P Y S++
Sbjct: 429 YSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLI 471
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
L+D FCK K D ++L+ + + +S+I LC G +A+ + ++
Sbjct: 435 LVDGFCK---KNNADAVLLIPDELMKRG--LPPDKAVYRSLIRRLCRKGLVDQAQKVFDQ 489
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ KGL Y + Y Y G ++ M + + N + +SY D E
Sbjct: 490 MQSKGLVGDSLVYATLAYTYLTEGKPVAASNTLDGMAKNQLYITPQIYNCLCTSYADEKE 549
Query: 275 LSRMVLWLQKMKDSGIPFSV 294
+ +LW++ ++ I SV
Sbjct: 550 -TLNILWVRAIERGLIKKSV 568
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/193 (21%), Positives = 85/193 (44%), Gaps = 8/193 (4%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I L K G+ + A L+ KL + V+ Y +ID CK D Y+
Sbjct: 302 GTLINGLCKVGETKAALELLRRNDGKLVQPD---VVMYNTIIDGMCKDKHVNDAFDLYSE 358
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
S ++ ++ISG C +G+ +A +L +M K + P + + ++ G+
Sbjct: 359 -----KVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGF 413
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G +++ + ++ M + D V + ++ Y NE+++ M G+ +V
Sbjct: 414 CKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANV 473
Query: 295 RTYNSVLNSCSTI 307
++YN ++N I
Sbjct: 474 QSYNIMINGFCKI 486
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 24/208 (11%)
Query: 170 DTYARLNQLVNSSSSVY---------VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
D Y +N+ VN + S++ Q+ MI+G C++ EA L +EM K +
Sbjct: 446 DGYCLVNE-VNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P Y +I G + G + +V++M G + D + N +L + + + + +
Sbjct: 505 FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAIT 564
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS-CST-----IMSMLQDLNSNDFPLSILELTEVLN--- 331
L K+K GI + TY ++ C + + +DL + L + T ++
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFC 624
Query: 332 -----EEEVSVVKELEDSSVLDEAMKWD 354
+E ++++ ++E++ + +A ++
Sbjct: 625 DKGLFDEALALLSKMEENGCIPDAKTYE 652
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +++D+ CK K D L +L + ++ GLC+ G+ +A
Sbjct: 543 IITYNSILDALCK---KHHVDKAITLLTKL--KGQGIRPDMNTYTILVKGLCQSGKLEDA 597
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ E++ VKG + Y +I G+ GL ++ ++++ME +G D +++ S
Sbjct: 598 RKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILS 657
Query: 269 Y--GDHNELSRMVL 280
D N+++ +L
Sbjct: 658 LFEKDENDMAEKLL 671
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 68/160 (42%), Gaps = 15/160 (9%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ-----ALKSMISGLCEMG 203
V+ Y +LID CK R++ + ++ + Q S++ LC+
Sbjct: 508 VITYSSLIDGLCKS----------GRISYALELVDEMHYRGQQPDIITYNSILDALCKKH 557
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+A L+ +++ +G+ P Y ++ G + G LED ++ + G +D
Sbjct: 558 HVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYT 617
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ + D + L KM+++G +TY ++ S
Sbjct: 618 VMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILS 657
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/187 (21%), Positives = 77/187 (41%), Gaps = 8/187 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II + K +A L E +SK R V Y LI FC + D + ++
Sbjct: 339 IIDGMCKDKHVNDAFDLYSEKVSK---RIFPDVFTYNALISGFCIVGKLKDAIDLFNKM- 394
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+S ++ ++ G C+ G EA+N++ M + ++P Y ++ GY
Sbjct: 395 ----TSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ + E I N M G + N++++ + + + ++M I V T
Sbjct: 451 VNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVIT 510
Query: 297 YNSVLNS 303
Y+S+++
Sbjct: 511 YSSLIDG 517
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 81/193 (41%), Gaps = 9/193 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N L +I+ L K G EAE+ L ++ V+ Y +ID +CK R +
Sbjct: 9 NAILYNNLISCLCKAGMLAEAESY----LKRMPQHCAPNVVSYNIIIDGYCK---ARNIE 61
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
A L ++ A S++ C+ G +A ++ EM KG EP +
Sbjct: 62 KALAFLREMEELGHPP--TPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNV 119
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++ G R + + + M S G + D V N +++ +L V L++MK
Sbjct: 120 LLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQED 179
Query: 290 IPFSVRTYNSVLN 302
+ + TY ++++
Sbjct: 180 VSPTFVTYTTLID 192
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I+GLC+ +P EA+ + +EMR +G+ P+ Y ++ G L+D + M
Sbjct: 292 AYSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFM 351
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G DT N+++ + + + + Q M GI + TYN ++
Sbjct: 352 LDQGRLPDTCSYNLMIRGFCANGDTNEAYCLFQDMIKDGIVLNTWTYNFMI 402
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 80/189 (42%), Gaps = 30/189 (15%)
Query: 173 ARLN--QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
+R+N QLV SS+ ++ G+ G EA++ +++M G+ P F Y +
Sbjct: 496 SRINCQQLVGSSNI----------LLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKL 545
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKD 287
+ G G + ++V ++ DG R + +L + GD WL +
Sbjct: 546 VVGLCWQGKADQARKLVEELVRDGKRPENQGLRQLLGALCAQGDFQGAYEFYCWLPSV-- 603
Query: 288 SGIPFSVRTYNSVLNSCS-----TIMSMLQDLNSNDFPLSILE-----LTEVLNEEEVSV 337
G+ ++ +N+++ SC + M++ P I+E E+ EEEV +
Sbjct: 604 -GVEVTLGMHNTLVTSCCLARKLDYLDMIE--QREGVPDVIVERIEKFRAELFREEEVKI 660
Query: 338 VKELEDSSV 346
+E D +
Sbjct: 661 YEETRDRKI 669
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 50/107 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+IS LC+ Q EA L+ MR KG PS ++ ++ R G L+D + +M
Sbjct: 440 LISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRIN 499
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ SN++L + +L++M D+GI TY+ ++
Sbjct: 500 CQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLV 546
>gi|125526118|gb|EAY74232.1| hypothetical protein OsI_02112 [Oryza sativa Indica Group]
Length = 556
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC +P +A L++EMR +G+E + I+Y + G +D +++ +
Sbjct: 223 TLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLY 282
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + N ++ Y H +L+ L+ M + GI + RTYN
Sbjct: 283 GVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYN 327
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
L + LC+ G P A L E R + + P Y +++G+ R G L+ + ++ +
Sbjct: 149 LNMAVDALCKEGHPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAE 208
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
M G R V ++ + + L +M++ GI ++ T N ++ + +
Sbjct: 209 MRLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQA-G 267
Query: 310 MLQDLNS--NDFPL 321
QD + FPL
Sbjct: 268 RFQDAHKVLEKFPL 281
>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
Length = 745
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 115/254 (45%), Gaps = 16/254 (6%)
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
S FQ N L + +++ L K+GQ +EA L+ E + + + +LV Y LI CK
Sbjct: 320 SGFQLNVILYSVLLSSLCKRGQVDEALQLLYEM--EANNLQPDLVT-YSILIHGLCKQGK 376
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ Y + + ++ A ++ GLCE G +A + + + L P
Sbjct: 377 VQQAIQLYKEM-----CFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDV 431
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I GY +LG +E+ R+ ++ V N ++ + + ++ L+
Sbjct: 432 TLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLES 491
Query: 285 MKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVV 338
+K G+ S TY +++N+ + + +L ++N D +++ T V+ + +
Sbjct: 492 IKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVI--KGLCKQ 549
Query: 339 KELEDSSVLDEAMK 352
++LE+S L E M+
Sbjct: 550 RKLEESVQLLEDMR 563
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C+ +A L+++M + LEP+ Y +I G R G +ED +R++ ++
Sbjct: 576 TIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDR 635
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ V ++ ++ + R V +M + G S++ Y++V+N
Sbjct: 636 NINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVIN 684
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 5/159 (3%)
Query: 143 SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
S R V Y +ID + K Y RL + S V S+I G C+
Sbjct: 425 SNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIV-----TFNSLIYGFCKN 479
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
+ EA L+E +++ GLEPS Y ++ Y G + + ++ +M V
Sbjct: 480 RKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTY 539
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+V+ +L V L+ M+ G+ TYN+++
Sbjct: 540 TVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTII 578
Score = 45.4 bits (106), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD- 253
+I GL G EA L +M +GL+P YK + G+ LGL+ I+ +M +D
Sbjct: 226 LIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDE 285
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V +++ + + + + + SG +V Y+ +L+S
Sbjct: 286 GLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335
Score = 42.0 bits (97), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++ CE G ++ L+ EM +K +EP+ Y +I G + LE+ +++ M +
Sbjct: 506 TLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAK 565
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS---------C 304
G D + N ++ + ++ + L M + + TYN +++
Sbjct: 566 GLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDA 625
Query: 305 STIMSMLQDLNSN 317
++ LQD N N
Sbjct: 626 DRVLVSLQDRNIN 638
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ +++S C++G A++ M G+ P + Y +I+G G +E+ + N M
Sbjct: 187 SFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDM 246
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSV------LNS 303
E G + D V +V + +S +QKM D G+ + TY + + +
Sbjct: 247 EKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGN 306
Query: 304 CSTIMSMLQDLNSNDFPLSIL 324
+ + +DL S+ F L+++
Sbjct: 307 IEEALRLRRDLLSSGFQLNVI 327
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 75/163 (46%), Gaps = 18/163 (11%)
Query: 159 FCKHDSKRGFD-DTYAR------LNQLVNSSSSV-YVKRQ----------ALKSMISGLC 200
F H G++ D Y R L ++ +SS+++ Y+K+ A +++ GLC
Sbjct: 118 FVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVVDGLC 177
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G EA +L +M KG++P+ F Y C+I+G ++ ++ M G D
Sbjct: 178 KDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQ 237
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N++ + +SR M GI +V TYNS++ +
Sbjct: 238 TFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGA 280
Score = 45.4 bits (106), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++G+C G+ ++A L + KG++ Y +I G + GLL+D E ++ +ME +G
Sbjct: 417 ILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG 476
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D N+ + E+S+ +L MK G + T ++N
Sbjct: 477 CPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLIN 524
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 79/191 (41%), Gaps = 21/191 (10%)
Query: 111 PKLVAEIIAFLDKQGQREEAET--LILETLSKLG------SREREL--------VLFYCN 154
P E+ + K GQ + +T +IL+ L K S REL ++ Y
Sbjct: 357 PVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSI 416
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
+++ C S +D + L SS V + MI+GLC+ G +AE+L+ +
Sbjct: 417 ILNGMC---SSGKLNDALELFSYL--SSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMK 471
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M G P Y + G R + + + M+ G R + + ++++ + + E
Sbjct: 472 MEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFSANKE 531
Query: 275 LSRMVLWLQKM 285
++LQK
Sbjct: 532 NRAFQVFLQKF 542
>gi|206575134|gb|ACI14437.1| Os01g67210-like protein [Triticum monococcum]
Length = 358
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 74/152 (48%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ +I S C+ + + R+ L + S +I+GL + G+ +A+++
Sbjct: 161 FAAVIHSLCRMKNVKDAKKLLMRMVNLGPAPGSA-----VFNFVITGLSKEGEMEDAKDM 215
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
I M +GL P + Y I+ GY + G++++ ++ + + +++ V ++++ Y
Sbjct: 216 IRVMESRGLRPDVYTYSVIMSGYAKGGMIDEAHSLLREAKKIYRKLNRVTYHILIRGYCK 275
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + + L++MK G+ +V YN ++ S
Sbjct: 276 MEEFEKALECLKEMKKDGVQPNVDEYNKLIQS 307
>gi|357506869|ref|XP_003623723.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355498738|gb|AES79941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 426
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/279 (21%), Positives = 118/279 (42%), Gaps = 22/279 (7%)
Query: 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFI-ALNALSHLLSPD-----TTHP 88
+T++ ++ ++ L + + KA R I F + L A ++ P +
Sbjct: 95 ITEEQKQAIAKLPFRMEKRCKAVMRQIICFSEEKGRLCDVLRAWVEIMKPTRADWLSVLK 154
Query: 89 RLSSLAFPLYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR 144
L ++ PLY+ + E E F+ N + ++I + K+ Q E AE I + + G
Sbjct: 155 ELKNMDHPLYLEVAEHALVEESFEPNLRDYTKLIHYYSKENQLEAAEN-IFTLMKQRG-- 211
Query: 145 ERELVLFYCN--LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202
F C+ ++ + SK G D + + KR + SMI
Sbjct: 212 ------FICDQVILTTMVHMYSKAGHLDRAEEYFEEIKLLGEPLDKR-SYGSMIMAYIRA 264
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P + E+L+EEM + + YK ++ Y +G E +R+ + ++ G D
Sbjct: 265 GMPEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAEGAQRVFDAIQLAGIIPDDKMC 324
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++++ +Y + + + + MK +GI + + +SVL
Sbjct: 325 SLLIYAYSMAGQSQKARIAFENMKRAGIEPTDKCISSVL 363
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ EAE ++ + S + V Y +LI C++ R D + +
Sbjct: 246 LINILSKKGKVREAELILSQIFQYDLSPD---VFTYTSLILGHCRN---RNLDLAFGVFD 299
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V ++I+GLC G+ EA +++EEM KG+EP+ + Y I
Sbjct: 300 RMVKEGCDP--NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 357
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ E+ +V +M+ G R + ++S +L + KM G+ + T
Sbjct: 358 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 417
Query: 297 YNSVLN 302
YN+++N
Sbjct: 418 YNALIN 423
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 96/228 (42%), Gaps = 28/228 (12%)
Query: 117 IIAFLDKQGQREEAETL--ILETLSKLGSRERELVLF--------------YCNLIDSFC 160
++A + K+G R +T ++ LS+LG E + L+ Y LI+ C
Sbjct: 367 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 426
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
G T ++ + S+ Q +I GLC G +A L E+M G
Sbjct: 427 V----GGRFSTALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 481
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y +I GY G + + R+++ M+ +G D N ++S + +L
Sbjct: 482 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 541
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
+ Q+M + G+ + +Y ++++ S + D LS+LE E
Sbjct: 542 YFQEMVECGLNPNPVSYTTLIDGHSKDGKV-------DIALSLLERME 582
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G+ A + +M + P+ + Y +IYG + G ++ E ++ +ME
Sbjct: 630 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 689
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D V ++ + + L L++M D G + RTY+ +L
Sbjct: 690 GLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLL 737
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G G + A L++ M+ G EP + Y ++ G+ + G LE +M
Sbjct: 490 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 549
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + V ++ + ++ + L++M++ G +V +YN+V+N S
Sbjct: 550 GLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLS 601
Score = 43.9 bits (102), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 107 FQW--------NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
F W N + EII L G E+A L E + K+G V+ Y LI+
Sbjct: 438 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL-FEKMLKMGPLPT--VVTYNTLING 494
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
+ +G + ARL L+ + ++SG + G+ A +EM
Sbjct: 495 YLT----KGNVNNAARLLDLM-KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 549
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL P+ Y +I G+ + G ++ ++ +ME G + N V++ N S
Sbjct: 550 GLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEA 609
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
KM + G+ +V TY ++++
Sbjct: 610 EKICDKMAEQGLLPNVITYTTLIDG 634
Score = 38.1 bits (87), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
K + EE + + L+++ L+ CN L+ K + G + Y Q++NS
Sbjct: 178 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY---KQMLNS 234
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ ++I+ L + G+ EAE ++ ++ L P F Y +I G+ R L+
Sbjct: 235 G--IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 292
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ ++M +G ++V + +++ + + + L++M + GI +V TY
Sbjct: 293 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 348
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC+ G+ EA+NL EM + L+P Y I+ + + G + R++ ME
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKK 588
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G N ++ G N++ + + +MK+ GI ++ TYN+ +
Sbjct: 589 GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAI 636
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ A L +EM KG +P+ F + ++ GY + GL + ++N MES G
Sbjct: 153 LIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFG 212
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++SS+ G +++ +MV +KM++ G+ + T+NS +++
Sbjct: 213 VLPNKVIYNTIVSSFCREGRNDDSEKMV---EKMREEGLVPDIVTFNSRISA 261
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q+ + GL G+ EAE ++++M KG+ PS + Y ++ G +LG+L D + IV
Sbjct: 327 QSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGL 386
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------ 303
M+ +G D V +L Y ++ LQ+M + + T N +L+S
Sbjct: 387 MKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR 446
Query: 304 CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLH 363
S +L+ +N + L + +V L S LD+A++ G + +H
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCN--------IIVDGLCGSGELDKAIEIVKG---MRVH 495
Query: 364 GM----HLGSAY 371
G +LG++Y
Sbjct: 496 GSAALGNLGNSY 507
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 177 QLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+L+N+ S V + +++S C G+ ++E ++E+MR +GL P + I
Sbjct: 203 ELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262
Query: 235 GRLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSY-------------------GD 271
+ G + D RI + ME D R +++ N++L + D
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 272 HNELSRMVLWLQ----------------KMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
L +WLQ +M D GI S+ +YN +++ + ML D
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCK-LGMLSD 379
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 5/150 (3%)
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+LI FCK R R+ +++ S +V +ISG+C G+ +AE L+
Sbjct: 124 SLIRGFCKIGKTR----KATRIMEIIEDSGAV-PDVITYNVLISGMCSTGRWMDAEKLLA 178
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M +G PS + +I R GLL ++ +M G +++ N +L +
Sbjct: 179 DMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEK 238
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ R + +L KM G + TYN++L +
Sbjct: 239 KMERAIEYLGKMTSRGCYPDIVTYNTLLTA 268
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 104/244 (42%), Gaps = 17/244 (6%)
Query: 57 ASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A +L++ V SP + N L + L R + + + +NP
Sbjct: 173 AEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNP--- 229
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYA 173
++ K+ + E A +E L K+ SR ++ Y L+ + CK D K D
Sbjct: 230 --LLHGFCKEKKMERA----IEYLGKMTSRGCYPDIVTYNTLLTALCK-DGK--VDAAVE 280
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
LNQL + S + ++I GL ++G+ +A L++EMR KGL+P Y ++ G
Sbjct: 281 LLNQLSSKGCSPVL--ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGG 338
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
R G +++ + + +E G + + + N ++ + R + +L M G +
Sbjct: 339 LSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPT 398
Query: 294 VRTY 297
+Y
Sbjct: 399 EASY 402
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC G A +++E+M G P+ Y +++G+ + +E + +M S G
Sbjct: 195 LINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRG 254
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI------M 308
D V N +L++ ++ V L ++ G + TYN+V++ S +
Sbjct: 255 CYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAA 314
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKW 353
+L ++ + I+ + S+V L +DEA+K+
Sbjct: 315 KLLDEMRAKGLKPDIITYS--------SLVGGLSREGKVDEAIKF 351
>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
rhodocnemis]
Length = 428
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 40/187 (21%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ LID CK+ + Y R+ S S+ ++I GLC+ G +A +L
Sbjct: 247 FTTLIDGHCKNGRVDFAMEIYKRM-----LSQSLLPDLITYNTLIYGLCKKGDLKQAHDL 301
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLE------------------------------ 241
I+EM +KGL+P F Y +I G + G L+
Sbjct: 302 IDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQ 361
Query: 242 -----DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
D E+++ +M S G + DT M+++ + ++ + L++M+ +G SV T
Sbjct: 362 EGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVT 421
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 422 YNVLMNG 428
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 84/178 (47%), Gaps = 13/178 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
A +Y R+ +S P L+ +I L K+G ++A LI E +S G + +
Sbjct: 262 FAMEIYKRMLSQSLL---PDLITYNTLIYGLCKKGDLKQAHDLIDE-MSMKGLKPDKFT- 316
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID CK D + +++ + + + A ++ISGLC+ G+ +AE
Sbjct: 317 -YTTLIDGCCKEGD---LDTAFEHRKRMIQEN--IRLDDVAYAALISGLCQEGRSVDAEK 370
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM GL+P Y II + + G + +++ +M+ +G V N++++
Sbjct: 371 MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC+ + +A L +EM VKGL P+G + +I G+ + G ++ I +M S
Sbjct: 215 LINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQS 274
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D + N ++ +L + + +M G+ TY ++++ C
Sbjct: 275 LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGC 324
>gi|414865543|tpg|DAA44100.1| TPA: hypothetical protein ZEAMMB73_135273 [Zea mays]
Length = 542
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
DS+R D+ + L+ ++ V+ + +++ G C+ G+ EAE L++ M G P
Sbjct: 161 DSQR-LDEAWGVLDSMLEVGVCPTVR--SYTAILHGYCKQGRVLEAERLLDTMIQVGCAP 217
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G R+G +ERI+ + E+ G + V N+ +S+ L +
Sbjct: 218 DVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQV 277
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
M G+ ++ T N +L C SM + L++LE +E LN
Sbjct: 278 DVMHSRGVYMTIETVN-ILFDCLCRGSMFSE------ALTLLECSEELN 319
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 88/214 (41%), Gaps = 19/214 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC +G+ + E ++ E KG P+ Y + R+G L++ R V+ M S G
Sbjct: 225 LIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMHSRG 284
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IM 308
+ N++ + S + L+ ++ V YN++++ C T ++
Sbjct: 285 VYMTIETVNILFDCLCRGSMFSEALTLLECSEELNWDVDVFCYNTMMSRLCDTGDIARVL 344
Query: 309 SMLQDLNSNDFPLSILELT----EVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHG 364
+L DL + T + + V K L D ++ +++D +HG
Sbjct: 345 KLLVDLVKKGIGPDMFSFTIAIRSLCRAGKFKVAKCLLD----NKGIEYDVVAFNTLIHG 400
Query: 365 MHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITV 398
+ + +LQ +M +R +V P T+
Sbjct: 401 LCMAGELHEMLQTYMDMTSR-----NVFPNNFTI 429
>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
brasiliensis]
Length = 427
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 87/178 (48%), Gaps = 13/178 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
LA +Y R+ +S P L+ +I L K+G ++A LI E +S G + ++
Sbjct: 261 LAMEIYKRMLSQSLL---PDLITYNTLIYGLCKKGDLKQAHHLIDE-MSMKGLKPDKIT- 315
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID CK D + +++ + + + A ++ISGLC+ G+ +AE
Sbjct: 316 -YTTLIDGCCKEGD---LDTAFEHRKRMIQEN--IXLDDVAYTALISGLCQEGRSVDAEK 369
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM GL+P+ Y II + + G + +++ +M+ DG V N++++
Sbjct: 370 MLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNS 181
K G A++ + + ++K G R V+ Y L++ + + D GF A L V
Sbjct: 150 KDGDIRVAQS-VFDAITKWGLRPS--VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQP 206
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
Y +I+GLC+ + +A L +EM VKGL P+G + +I G+ + G ++
Sbjct: 207 DVYTY------SVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVD 260
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
I +M S D + N ++ +L + + +M G+ TY +++
Sbjct: 261 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 320
Query: 302 NSC 304
+ C
Sbjct: 321 DGC 323
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ EAE ++ + S + V Y +LI C++ R D + +
Sbjct: 204 LINILSKKGKVREAELILSQIFQYDLSPD---VFTYTSLILGHCRN---RNLDLAFGVFD 257
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V ++I+GLC G+ EA +++EEM KG+EP+ + Y I
Sbjct: 258 RMVKEGCDP--NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ E+ +V +M+ G R + ++S +L + KM G+ + T
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375
Query: 297 YNSVLN 302
YN+++N
Sbjct: 376 YNALIN 381
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 21/205 (10%)
Query: 117 IIAFLDKQGQREEAETL--ILETLSKLGSRERELVLF--------------YCNLIDSFC 160
++A + K+G R +T ++ LS+LG E + L+ Y LI+ C
Sbjct: 325 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 384
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
G T ++ + S+ Q +I GLC G +A L E+M G
Sbjct: 385 VG----GRFSTALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y +I GY G + + R+++ M+ +G D N ++S + +L
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCS 305
+ Q+M + G+ + +Y ++++ S
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHS 524
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC G+ A + +M + P+ + Y +IYG + G ++ E ++ +ME
Sbjct: 588 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERK 647
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D V ++ + + L L++M D G + RTY+ +L
Sbjct: 648 GLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLL 695
Score = 45.1 bits (105), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G G + A L++ M+ G EP + Y ++ G+ + G LE +M
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + V ++ + ++ + L++M++ G +V +YN+V+N S
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 107 FQW--------NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
F W N + EII L G E+A L E + K+G V+ Y LI+
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL-FEKMLKMGPLPT--VVTYNTLING 452
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
+ +G + ARL L+ + ++SG + G+ A +EM
Sbjct: 453 YLT----KGNVNNAARLLDLM-KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL P+ Y +I G+ + G ++ ++ +ME G + N V++ N S
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
KM + G+ +V TY ++++
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDG 592
Score = 38.1 bits (87), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
K + EE + + L+++ L+ CN L+ K + G + Y Q++NS
Sbjct: 136 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY---KQMLNS 192
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ ++I+ L + G+ EAE ++ ++ L P F Y +I G+ R L+
Sbjct: 193 G--IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 250
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ ++M +G ++V + +++ + + + L++M + GI +V TY
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306
>gi|242064536|ref|XP_002453557.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
gi|241933388|gb|EES06533.1| hypothetical protein SORBIDRAFT_04g008050 [Sorghum bicolor]
Length = 390
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 5/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+ + CK + R+ SS R A SM+ LC + EA +L
Sbjct: 115 YSYLVKALCKSGHASEAHSVFCRM-----WSSHEKGDRDAFVSMLEALCNAEKTAEAIDL 169
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG+ Y I G+L + M + ++M+++G D N+++SS+G
Sbjct: 170 LHMMPEKGITTDVGMYNIIFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGR 229
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + ++M DS V TYNS++N
Sbjct: 230 VGLVDKASELFEEMDDSSCKPDVITYNSMIN 260
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ S L ++ Q +L ++M+ G+ P F Y +I +GR+GL++ + +M+
Sbjct: 188 IFSALGKLKQVSFMSSLYDKMKANGVAPDVFTYNIMISSFGRVGLVDKASELFEEMDDSS 247
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ D + N +++ G + +L + + M++ G V TY S+L C
Sbjct: 248 CKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTY-SILIEC 296
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MIS +G +A L EEM +P Y +I G+ G L++ + M+ G
Sbjct: 223 MISSFGRVGLVDKASELFEEMDDSSCKPDVITYNSMINCLGKNGDLDEAHMLFKDMQEKG 282
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D ++++ +G N++ +M G ++ TYN +L+
Sbjct: 283 YDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQGCVPNIVTYNILLD 330
Score = 38.1 bits (87), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI+ L + G EA L ++M+ KG +P F Y +I +G+ ++ + ++M +
Sbjct: 257 SMINCLGKNGDLDEAHMLFKDMQEKGYDPDVFTYSILIECFGKSNKVDMACSLFDEMIAQ 316
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + V N++L H + + +K G+ TY+
Sbjct: 317 GCVPNIVTYNILLDCLERHGKTREAHKLYETLKQQGLAPDSITYS 361
>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680-like [Glycine max]
Length = 615
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 89/195 (45%), Gaps = 10/195 (5%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P LV +I L K G +EA L+ E ++ G + ++ + LID CK
Sbjct: 386 PDLVTYNALINGLCKVGDLKEARRLVNE-MTASGLKPDKIT--FTTLIDGCCKDGDMESA 442
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ R+ + + + A ++ISGLC G+ H+A ++ +M G +P Y
Sbjct: 443 LEIKRRMVE-----EGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYT 497
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I + + G ++ +++ +M+SDG V N +++ ++ + L M +
Sbjct: 498 MVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNV 557
Query: 289 GIPFSVRTYNSVLNS 303
G+ + TYN +L+
Sbjct: 558 GVAPNDITYNILLDG 572
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
Query: 133 LILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQA 191
L+ + + K G R V+ + LI CK D + GF RL V S V
Sbjct: 269 LVFDEIPKRGLRPT--VVSFNTLISGCCKSGDVEEGF-----RLKG-VMESEGVCPDVFT 320
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I+GLC+ G+ E L +EM +GL P+G + +I G + G ++ + M
Sbjct: 321 FSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMML 380
Query: 252 SDGTRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ G R D V N + L GD E R+V +M SG+ T+ ++++ C
Sbjct: 381 AQGVRPDLVTYNALINGLCKVGDLKEARRLV---NEMTASGLKPDKITFTTLIDGC 433
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 14/191 (7%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDT 171
+ +I L K+G+ +E L E R LV + + LID CK G
Sbjct: 322 SALINGLCKEGRLDEGSLLFDEMCG------RGLVPNGVTFTTLIDGQCK-----GGKVD 370
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
A N + + V ++I+GLC++G EA L+ EM GL+P + +I
Sbjct: 371 LALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLI 430
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G + G +E I +M +G +D V ++S + L M +G
Sbjct: 431 DGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFK 490
Query: 292 FSVRTYNSVLN 302
TY V++
Sbjct: 491 PDDPTYTMVID 501
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 21/203 (10%)
Query: 47 ALAVTRDSKAASRLISKFVASS--PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104
L D K A RL+++ AS P I L D A + R+ EE
Sbjct: 397 GLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMES----ALEIKRRMVEE 452
Query: 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-D 163
+ + +I+ L ++G+ +A ++ + LS G + + Y +ID FCK D
Sbjct: 453 G-IELDDVAFTALISGLCREGRVHDAGRMLTDMLSA-GFKPDDPT--YTMVIDCFCKKGD 508
Query: 164 SKRGFDDTYARLNQLVNSSSSV--YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
K GF +L + + S V V AL ++GLC+ GQ A+ L++ M G+
Sbjct: 509 VKMGF-----KLLKEMQSDGHVPGVVTYNAL---MNGLCKQGQMKNAKMLLDAMLNVGVA 560
Query: 222 PSGFEYKCIIYGYGRLGLLEDME 244
P+ Y ++ G+ + G D++
Sbjct: 561 PNDITYNILLDGHSKHGSSVDVD 583
>gi|326508346|dbj|BAJ99440.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 819
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++ QP +A + EMR +P+ Y +I YG G+ ++ ++++ME D
Sbjct: 405 TLLNAYGRSAQPEKAREVFNEMRKNSCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKD 464
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G D V + +L++ G + +++ L+ K GI ++ YNS + S
Sbjct: 465 GIPPDVVSISTLLAACGRCRQTTKIDTVLEAAKFRGIELNIVAYNSGIGS 514
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 50/112 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G EA + + ++ GL P Y ++ YGR E + N+M +
Sbjct: 370 ALLGAYASHGMHTEAFGIFKLLKQNGLRPDVVSYTTLLNAYGRSAQPEKAREVFNEMRKN 429
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
+ + V N ++ +YG + L +M+ GIP V + +++L +C
Sbjct: 430 SCKPNKVSYNALIDAYGSAGMFKEAISLLHEMEKDGIPPDVVSISTLLAACG 481
Score = 38.5 bits (88), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 41/178 (23%)
Query: 195 MISGLCEMGQ----------------P-------------------HEAENLIEEMRVKG 219
+ISGLC++G+ P EAE+ M+ G
Sbjct: 546 LISGLCKLGKYAESLKFFEDMVDLRIPLTKEVYSSLICSYVKQDKLAEAESTFINMKASG 605
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
P Y +I Y G + + +ME + D + + ++ + N+ R++
Sbjct: 606 CFPDVLTYTAMIQAYTDHGSWTSVWDLFKEMEGNAILPDAIICSSLMEALNKGNQYGRVL 665
Query: 280 LWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSILELTEVLN 331
++ M D I + + Y ++ SCS T +++ L+S+ +S+ +L +LN
Sbjct: 666 QLMKFMHDQCIQLNQKAYFEIIASCSMLRDWKTASEIIEHLDSSLPSISVGKLNYLLN 723
>gi|326501502|dbj|BAK02540.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 673
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ EA + IE M+ GL+PS Y ++ Y + GL + +V M +DG TV
Sbjct: 528 GRYKEAIDCIEAMKADGLKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVL 587
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++ V TY +++ +
Sbjct: 588 NSLINAFGEDRRVVEAFSVLQFMKENDFRPDVITYTTLMKA 628
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 11/192 (5%)
Query: 114 VAEIIAFLDKQGQREEAETLILETL--SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
V +I+ L G+ EAE L LE ++ R R Y L+ + K S + +
Sbjct: 271 VTALISALGIAGRVPEAEALFLEFFLAGEIKPRTRA----YNALLKGYVKIGSLKNAEHV 326
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
L+++ S V ++ G+ A L++EM G++PS + + I+
Sbjct: 327 ---LDEM--SECGVAPDEATYSLLVDAYTRAGRWESARILLKEMEADGVKPSSYVFSRIL 381
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G+ G + ++ +M + G + D N+++ ++G +N L + +M+ GI
Sbjct: 382 AGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYNCLGHAMDVFNRMRGEGIE 441
Query: 292 FSVRTYNSVLNS 303
V T+N+++++
Sbjct: 442 PDVVTWNTLIDA 453
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ L E + E ++ EM+ +GL P+ Y ++ YGR G ++ + M++DG
Sbjct: 485 MINLLGEQERWVGVETMMSEMKEQGLVPNIITYTTLVDVYGRSGRYKEAIDCIEAMKADG 544
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIM 308
+ + ++++Y + ++ M+ G+ S NS++N+
Sbjct: 545 LKPSPTMYHALVNAYAQRGLADHALNVVKAMRADGLEASTVVLNSLINAFGEDRRVVEAF 604
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351
S+LQ + NDF ++ T ++ + + V++ + V+ E M
Sbjct: 605 SVLQFMKENDFRPDVITYTTLM--KALIRVEQFDKVPVIYEEM 645
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 56/124 (45%), Gaps = 6/124 (4%)
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
V SS V+ + +++G + G +A ++ EM G++P Y +I +G+
Sbjct: 370 VKPSSYVFSR------ILAGFRDRGDWQKAFAVLREMHASGVQPDRHFYNVMIDTFGKYN 423
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
L + N+M +G D V N ++ ++ + ++M++S P TYN
Sbjct: 424 CLGHAMDVFNRMRGEGIEPDVVTWNTLIDAHCKGGRHDCAMELFKEMRESNCPPGTTTYN 483
Query: 299 SVLN 302
++N
Sbjct: 484 IMIN 487
>gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 642
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 88/215 (40%), Gaps = 10/215 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E F P +I L K + E A L E G+ + Y +I KH
Sbjct: 436 DEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRV---YAVMI----KH 488
Query: 163 DSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
K G + N++ N S V A +++SG+ + G +EA +L+ +M G
Sbjct: 489 FGKCGKLSEAVDLFNEMKNQGSGPDV--YAYNALMSGMVKAGMVNEANSLLRKMEENGCT 546
Query: 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281
+ I+ G+ R G+ + M+ G + D V N +L +
Sbjct: 547 ADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAARL 606
Query: 282 LQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNS 316
+++MKD G + TY+S+L++ + D++S
Sbjct: 607 MREMKDKGFEYDAITYSSILDAVGNMDHEKDDVSS 641
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 17/192 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L ++GQ E+ + E ++ + Y LI S+ K G +D+ RL
Sbjct: 203 VILMLMQEGQHEKVHEVYTEMCNEGDCFPDTIT--YSALISSY----EKLGRNDSAIRLF 256
Query: 176 ----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ + + +Y +++ ++G+ +A +L EEM+ G P+ + Y +I
Sbjct: 257 DEMKDNCMQPTEKIYT------TLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G+ G +E+ + M +DG D V N +++ G L + +M
Sbjct: 311 KGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMGTWRCT 370
Query: 292 FSVRTYNSVLNS 303
+V +YN+V+ +
Sbjct: 371 PTVVSYNTVIKA 382
Score = 42.7 bits (99), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I G+ E + +++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
V + +++ +G +LS V +MK+ G V YN+++ S M+ +
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM-SGMVKAGMVNEA 533
Query: 315 NS 316
NS
Sbjct: 534 NS 535
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 103/224 (45%), Gaps = 16/224 (7%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
++R +E F+ + + I+ G+ EA+ +I E +SK G R V+ Y ++D
Sbjct: 326 FLRESEGKRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISK-GCRPD--VVTYSAVVD 382
Query: 158 SFCKHDSKRGFDDTYARLNQLV-NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR 216
FC+ D + + N V AL ++GLC++G+ EA L+ +
Sbjct: 383 GFCRIGE---LDQARKMMKHMYKNGCKPNTVTHTAL---LNGLCKVGKSSEAWELLNKSE 436
Query: 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276
+ PSG Y I++G+ R G L + +V QM G V N+++ + + +
Sbjct: 437 EEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCKEQKPA 496
Query: 277 RMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDL 314
R ++++ + G +V + +V++ S + +S+L D+
Sbjct: 497 RAKDFMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDM 540
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRV-KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+++S LC+ + E NL+E MR G+ P Y +I+G + G ++ + + E
Sbjct: 273 TVMSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEG 332
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
RVD V + ++ S+ + +S + +M G V TY++V++ I + Q
Sbjct: 333 KRFRVDQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQ 392
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 26/203 (12%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI+ +CK +R D+ + L ++ S + +++ GLC++G+P EA NL
Sbjct: 375 YNILINGYCK---RRRLDEAKSLLVEM--SEKELTPDTVTYSTLMQGLCQVGRPQEALNL 429
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM GL P Y ++ G + G L++ +++ M+ D V N+++
Sbjct: 430 FKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFI 489
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
+L K+ GI ++RTY TI M++ L L E L+
Sbjct: 490 AGKLEVAKELFSKLFADGIQPTIRTY--------TI--MIKGL-----------LKEGLS 528
Query: 332 EEEVSVVKELEDSSVLDEAMKWD 354
+E + +++ED L + ++
Sbjct: 529 DEAYELFRKMEDDGFLPNSCSYN 551
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 1/116 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I+G C G+ EA L EM +G +P Y +I G + G +++ +M
Sbjct: 164 TFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKM 223
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
E G + + V ++ S ++ + L +M D GIP V TY+++L+ CS
Sbjct: 224 EEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCS 279
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 62/282 (21%), Positives = 116/282 (41%), Gaps = 35/282 (12%)
Query: 91 SSLAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSREREL 148
+S+A L ++ E+ P LVA II L K +A L+ E + + +
Sbjct: 213 TSMALQLLRKMEEKGC---KPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPD--- 266
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y ++ FC S ++ N++V +V ++ GLC+ G EA
Sbjct: 267 VVTYSTILHGFC---SLGHLNEATILFNEMV--GRNVMPNTVTFTILVDGLCKEGMVSEA 321
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ E M KG EP+ + Y ++ GY +++ +++++ M G N++++
Sbjct: 322 RCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILING 381
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
Y L L +M + + TY+ +++Q L P
Sbjct: 382 YCKRRRLDEAKSLLVEMSEKELTPDTVTYS----------TLMQGLCQVGRP-------- 423
Query: 329 VLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSA 370
+E +++ KE+ S +L + M + + L HG HL A
Sbjct: 424 ---QEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHG-HLDEA 461
Score = 38.9 bits (89), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 69/167 (41%), Gaps = 16/167 (9%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L+D CKH D+ L + S + +I G+ G+ A+ L
Sbjct: 445 YSTLLDGLCKHGH---LDEALKLLKSM--QESKIEPDIVLYNILIEGMFIAGKLEVAKEL 499
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
++ G++P+ Y +I G + GL ++ + +ME DG ++ N+++ +
Sbjct: 500 FSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQ 559
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSND 318
+ + S + + +M G FS S+ ML DL S D
Sbjct: 560 NQDSSTAIRLIDEM--VGKRFSAD---------SSTFQMLLDLESRD 595
>gi|449446895|ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
chloroplastic-like [Cucumis sativus]
Length = 668
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GL + G EA+ + +EM+ K ++ G+ + +I + R GLLE+ + + E+
Sbjct: 354 LMDGLAKAGSIREAKTVFDEMKAKNVKTDGYAHSIMISAFCRGGLLEEAKLLAKDFEATY 413
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
R D V N +L +Y E+ ++ L+KM D I T++
Sbjct: 414 DRYDIVILNTMLCAYCRAGEMESVMQMLRKMDDLAISPDYNTFH 457
>gi|115436834|ref|NP_001043148.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|56201661|dbj|BAD73125.1| leaf protein -like [Oryza sativa Japonica Group]
gi|113532679|dbj|BAF05062.1| Os01g0506100 [Oryza sativa Japonica Group]
gi|215717162|dbj|BAG95525.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 541
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 53/105 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC +P +A L++EMR +G+E + I+Y + G +D +++ +
Sbjct: 223 TLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQAGRFQDAHKVLEKFPLY 282
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G + N ++ Y H +L+ L+ M + GI + RTYN
Sbjct: 283 GVAPNISTFNSLVMGYCKHGDLAGASSVLKVMTERGISPTTRTYN 327
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
L + LC+ G P A L E R + + P Y +++G+ R G L+ + ++ +
Sbjct: 149 LNMAVDALCKEGHPRAAVELFERWRREEPDSPPDERAYNILLHGWSRAGRLDKVGKLWAE 208
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
M G R V ++ + + L +M++ GI ++ T N ++ + +
Sbjct: 209 MRLAGVRPTVVTYGTLIEGLCVKRRPDQAIALLDEMREEGIEANLLTCNPIVYALAQ-AG 267
Query: 310 MLQDLNS--NDFPL 321
QD + FPL
Sbjct: 268 RFQDAHKVLEKFPL 281
>gi|168060335|ref|XP_001782152.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666390|gb|EDQ53046.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 281
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 109/250 (43%), Gaps = 35/250 (14%)
Query: 97 LYMRITE----ESWFQWNPKLVAEIIAFLDKQGQREEAETL--ILETL---SKLGSRERE 147
LY++I E +SWF+ + ++I ++G EAE + I+E + LG+
Sbjct: 27 LYLKIFEWGLLQSWFEAGVRDYTKLIDKYGREGNVVEAEQMFRIMEERGIPADLGA---- 82
Query: 148 LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQP 205
+ LI ++ G ++ Q++ S ++ A+ K++I +G P
Sbjct: 83 ----FTVLIAAY-------GRAKMLEKVKQVLQDVSLAGLELDAVFYKTVIVAYGSVGMP 131
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
EAE+++ M G+ Y ++ YGRLG D +R+ ++M G R D +
Sbjct: 132 KEAEDVLSSMESAGVPDGKDAYLALLNAYGRLGHASDAQRVFDRMHLKGFRGDLKAFTAL 191
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIP---------FSVRTYNSVLNSCSTIMSMLQDLNS 316
L +Y + + + L Q ++ +G+ SV ++LN + ++ L+
Sbjct: 192 LEAYSNAQDYANAELVFQSLRAAGLKPDDRALASMVSVYAKANMLNRAAEVIVELEGAGM 251
Query: 317 NDFPLSILEL 326
P+++ L
Sbjct: 252 RFGPVTLTSL 261
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S S + +MI G C+ G + A+ L+ +MRV L+PS F+Y C++ + G L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ R+ +M+ D D V N+++ ++ L M +G+ + TY+ +
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKL 605
Query: 301 LN 302
+N
Sbjct: 606 IN 607
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRG---FDDT------- 171
K G+ +EA + E K E +LV+ Y +LI FC + RG FD+
Sbjct: 224 KAGKMDEAMGFLKEM--KFMGLEADLVV-YTSLIRGFCDCGELDRGKALFDEVLERGDSP 280
Query: 172 -----------YARLNQLVNSSS--------SVYVKRQALKSMISGLCEMGQPHEAENLI 212
+ +L QL +S V +I GLC +G+ EA L+
Sbjct: 281 CAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLL 340
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS---SY 269
M K EP+ Y II + GL+ D IV M+ TR D + N++L +
Sbjct: 341 NLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAK 400
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GD +E S+++ + K P V +YN++++
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDP-DVISYNALIHG 433
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +A +L+ EMR L P F Y +I G+ LE + N+M+ G
Sbjct: 148 LLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSG 207
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V +++ ++ ++ + +L++MK G+ + Y S++
Sbjct: 208 CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLI 254
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LID+FCK D+ L ++ + + VY S+I G C+ G+ +
Sbjct: 218 LIDAFCKAGK---MDEAMGFLKEMKFMGLEADLVVYT------SLIRGFCDCGELDRGKA 268
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
L +E+ +G P Y +I G+ +LG L++ I M G R
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVR 314
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +L++ FC HD
Sbjct: 325 KINPNLVTFNALIDAFV-KEGKFVEAEKLYDDMIKRSIDPD---IFTYNSLVNGFCMHDR 380
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 381 ---LDKAKQMFEFMV--SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 495
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 496 MQKSEIKLDIYIYTTMI 512
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R DT+ ++ HN+ S V + +M G ++ TY V+N L
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-------LCKR 238
Query: 315 NSNDFPLSILELTEVLN-EEEVSVVKELEDS 344
D L++L E E +V + + DS
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 44/288 (15%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNAL 77
C R+ +++L L ++ K G S + L+ + + IS VA Q + +
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYE-PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG-- 185
Query: 78 SHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILET 137
PDT ++L L++ +E +A +D+ QR L+
Sbjct: 186 ---YRPDTI--TFTTLIHGLFLH-----------NKASEAVALVDRMVQRGCQPNLVT-- 227
Query: 138 LSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSM 195
Y +++ CK RG DT LN L+N + ++ + ++
Sbjct: 228 --------------YGVVVNGLCK----RG--DTDLALN-LLNKMEAAKIEADVVIFNTI 266
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I LC+ +A NL +EM KG+ P+ Y +I G D ++++ M
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ + M I + TYNS++N
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 374
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E + N + +I+ L G+ +A L+ + + K LV F LID+F K
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTFNA-LIDAFVKE 343
Query: 163 ----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
++++ +DD R S+ S+++G C + +A+ + E M K
Sbjct: 344 GKFVEAEKLYDDMIKR---------SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
P Y +I G+ + +ED + +M G DTV ++ +
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
++M G+P + TY+ +L+
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLDG 479
>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 794
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP V +I L K G+ E+A E +I E LS G+ + Y +LI S C D
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP-GN------IVYNSLIHSLCIFD 458
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 459 K---WDKAKELILEMLDRG--ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ +++ M S G + D V N +++ Y + + ++ +
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M+ SG+ + TYN +L
Sbjct: 574 EMESSGVSPDIITYNIILQG 593
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y ++ GY G L +M +++ M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + ++++ +Y ++ + +L KM+ G+ TY +V+
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ F K D Y +++++ + S+I+ LC+ +A
Sbjct: 199 VVSYTTVINGFFKEGD---LDKAYGTYHEMLDRG--ILPNVVTYSSIIAALCKAQAMDKA 253
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ M G+ P+ Y I++GY G ++ + +M SDG D V N ++
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Score = 38.5 bits (88), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---KHDSKRGFDDTYARLNQLV 179
K+G+ E+E L + + ++G + ++ Y LID +C K D +L+
Sbjct: 491 KEGRVIESEKL-FDLMVRIGVKPD--IITYSTLIDGYCLAGKMDEA----------TKLL 537
Query: 180 NSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
S SV +K + ++I+G C++ + +A L EM G+ P Y I+ G +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + + GT+++ N++L +N + Q + + + RT+
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 298 NSVLNS 303
N ++ +
Sbjct: 658 NIMIGA 663
>gi|255686032|gb|ACU28505.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 142
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 5 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 64
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 65 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 118
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 36 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 95
Query: 250 MESDGTRVDTVCSNMVLSS 268
M +G D N +L+
Sbjct: 96 MMDNGVDPDVYTYNSLLNG 114
>gi|255548349|ref|XP_002515231.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545711|gb|EEF47215.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 505
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 8/164 (4%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185
Q EEAE L E + +LG + V+ Y +LID +CK R + Y + ++ S
Sbjct: 222 QSEEAE-LFFEEMRELGIKPD--VVSYNSLIDVYCKD---REMEKAYKVVEKMREEDISP 275
Query: 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
V S+I GL +GQP +A +++ EM+ G P Y +I Y L D
Sbjct: 276 DV--ITYTSIIGGLGLVGQPDKARDILNEMKEYGCYPDVAAYNAVIRNYCIAKRLGDASN 333
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
++++M S G + N+ + N+L ++M +SG
Sbjct: 334 LMDEMASKGLSPNATTYNLFFRVFYWSNDLRNSWSLYRRMMESG 377
Score = 46.2 bits (108), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I C+ + +A ++E+MR + + P Y II G G +G + I+N+M+
Sbjct: 247 SLIDVYCKDREMEKAYKVVEKMREEDISPDVITYTSIIGGLGLVGQPDKARDILNEMKEY 306
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
G D N V+ +Y L + +M G+ + TYN
Sbjct: 307 GCYPDVAAYNAVIRNYCIAKRLGDASNLMDEMASKGLSPNATTYN 351
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S S + +MI G C+ G + A+ L+ +MRV L+PS F+Y C++ + G L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ R+ +M+ D D V N+++ ++ L M +G+ + TY+ +
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKL 605
Query: 301 LN 302
+N
Sbjct: 606 IN 607
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 90/214 (42%), Gaps = 37/214 (17%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRG---FDDT------- 171
K G+ +EA + E K E +LV+ Y +LI FC + RG FD+
Sbjct: 224 KAGKMDEAMGFLKEM--KFMGLEADLVV-YTSLIRGFCDCGELDRGKALFDEVLERGDSP 280
Query: 172 -----------YARLNQLVNSSS--------SVYVKRQALKSMISGLCEMGQPHEAENLI 212
+ +L QL +S V +I GLC +G+ EA +
Sbjct: 281 CAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPL 340
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS---SY 269
M K EP+ Y II + GL+ D IV M+ TR D + N++L +
Sbjct: 341 NLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAK 400
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GD +E S+++ + K P V +YN++++
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDP-DVISYNALIHG 433
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +A +L+ EMR L P F Y +I G+ LE + N+M+ G
Sbjct: 148 LLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSG 207
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V +++ ++ ++ + +L++MK G+ + Y S++
Sbjct: 208 CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLI 254
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LID+FCK D+ L ++ + + VY S+I G C+ G+ +
Sbjct: 218 LIDAFCKAGK---MDEAMGFLKEMKFMGLEADLVVYT------SLIRGFCDCGELDRGKA 268
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
L +E+ +G P Y +I G+ +LG L++ I M G R
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVR 314
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 74/154 (48%), Gaps = 7/154 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
VL Y +L+++ CK + D+ Y ++ S V + I CE H
Sbjct: 252 VLAYNSLLEALCKGGN---VDEAYKMFREI--GSHGVEPDACSYAIFIRAYCEANNIHSV 306
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++ M+ L P+ F Y CII + G +ED +++++M G D N +L+
Sbjct: 307 FSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTILAY 366
Query: 269 YGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVL 301
+ +H+E++R + M KD+ +P +YN +L
Sbjct: 367 HCEHSEVNRATKLISIMVKDNCLP-DRHSYNMLL 399
Score = 41.2 bits (95), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/115 (20%), Positives = 53/115 (46%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
K + ++ G ++G+ EA + +EMR +G Y ++ + G +++ ++
Sbjct: 215 AKAKTYSILVRGWGDIGEAVEARKVFDEMRGRGCALDVLAYNSLLEALCKGGNVDEAYKM 274
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ S G D + + +Y + N + + L +MK + +V TYN ++
Sbjct: 275 FREIGSHGVEPDACSYAIFIRAYCEANNIHSVFSVLDRMKRYDLVPNVFTYNCII 329
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 33/221 (14%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKR------ 166
+I K+G+ ++A L + + + S + V+ Y +LID CK S+R
Sbjct: 163 LIDGFSKEGEVDKAYELFYKMIEQSVSPD---VVTYNSLIDGLCKTKEMVKSERVLEQMV 219
Query: 167 --GFDDTYARLNQLVNSSSSVYVKRQALK------------------SMISGLCEMGQPH 206
G N L+ S+ + +++++ S I LC +
Sbjct: 220 DAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALCRHNRIK 279
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA+++ + M +KG +P+ Y +++GY G +M +VN M S G + N+++
Sbjct: 280 EAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILI 339
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
++Y + + +L + M++ G+ T+ +V++S I
Sbjct: 340 NAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRI 380
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID F K + + ++ Y + Q V+ Y S+I GLC+ + ++E
Sbjct: 160 YNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTY------NSLIDGLCKTKEMVKSER 213
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E+M G+ P+ Y +IYGY G+ ++ R+ +M S G V N + +
Sbjct: 214 VLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMSSSGLIPCVVNCNSFIHALC 273
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
HN + M G ++ +Y+++L+
Sbjct: 274 RHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHG 306
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 5/125 (4%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
S++ G C +G EA L++ M G+EP+ + Y ++ GY + G ++D + M
Sbjct: 476 FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDML 535
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-----NSCST 306
G + +V N++L + +M +SG S++TY VL N+C+
Sbjct: 536 HKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTD 595
Query: 307 IMSML 311
+ML
Sbjct: 596 EANML 600
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/192 (20%), Positives = 92/192 (47%), Gaps = 8/192 (4%)
Query: 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
K + II L K+G+ E + I++ + + G R V+ + +L++ +C + ++
Sbjct: 439 KYFSSIINNLFKEGRVAEGKD-IMDLMVQTGQRPN--VVTFNSLMEGYCLVGN---MEEA 492
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+A L+ + +S + +++ G C+ G+ +A + +M KG++P+ Y I+
Sbjct: 493 FALLDAM--ASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIIL 550
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+G + +++ ++M GT V +VL +N + L+K+ +
Sbjct: 551 HGLFQARRTTAAKKMFHEMIESGTTVSIQTYGVVLGGLCRNNCTDEANMLLEKLFAMNVK 610
Query: 292 FSVRTYNSVLNS 303
F + T+N V+++
Sbjct: 611 FDIITFNIVISA 622
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 63/153 (41%), Gaps = 6/153 (3%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN I + C+H+ + D + + L ++ + +++ G G +L
Sbjct: 265 CNSFIHALCRHNRIKEAKDIFDSM-VLKGPKPNII----SYSTLLHGYAAEGCFANMNSL 319
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG+ P+ + +I Y R G+++ I M++ G DTV V+SS
Sbjct: 320 VNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCR 379
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
L + M D G+P S Y ++ C
Sbjct: 380 IGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGC 412
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 172 YARLNQLVN--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+A +N LVN S + + +I+ G +A + E+M+ KG+ P +
Sbjct: 313 FANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 372
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I R+G L+D N M G ++ +H EL + + +M +
Sbjct: 373 VISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKD 432
Query: 290 I-PFSVRTYNSVLNS 303
I P V+ ++S++N+
Sbjct: 433 IPPPGVKYFSSIINN 447
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 89/203 (43%), Gaps = 17/203 (8%)
Query: 117 IIAFLDKQGQREEAET--LILETLSKLGSRERELVLF----------YCNLIDSFCKHDS 164
++ +++ QG + + T +I+E L G + F Y +++ +C+ +
Sbjct: 486 LLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLENYSAMVNGYCEANH 545
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
+ +A L +L S +K+ + ++ LC G +A L+E M + P+
Sbjct: 546 ---VNKAFALLIRL--SKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTM 600
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I + G +E + + N + G D + ++++ Y N++ L
Sbjct: 601 IMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGD 660
Query: 285 MKDSGIPFSVRTYNSVLNSCSTI 307
MK+ GI V TY +LN+CS I
Sbjct: 661 MKNRGIEPDVITYTVLLNNCSKI 683
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 17/246 (6%)
Query: 60 LISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIA 119
L +K +PQ ++ N L + L R +A +Y ++ F NP IA
Sbjct: 173 LQTKHCGFAPQILSCNFLMNRL----VESRKVDMAIAIYRQLKA---FGLNPNDYTYTIA 225
Query: 120 F--LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177
++G EA + + + G Y I+ C H D + L
Sbjct: 226 IKGFCRKGNLAEAID-VFRDMEESGVTPNSFS--YTTFIEGLCLHGRS---DLGFKVLQD 279
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
++N+ + V A +I G C + EAE+++ EM +G P + Y +I GY +
Sbjct: 280 VINAKIPMDV--FAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMV 337
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G L + ++M S G + + V + +L S + ++ K GI F Y
Sbjct: 338 GNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACY 397
Query: 298 NSVLNS 303
N V+++
Sbjct: 398 NVVMDA 403
Score = 46.6 bits (109), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 52/118 (44%)
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++ ++ LC++G+ EA L+ EM+ K + P Y +I GY G + D
Sbjct: 389 GIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDA 448
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
I +M+ G + D V N++ + + + L M+ G+ T+N ++
Sbjct: 449 LNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMII 506
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/124 (20%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL------LEDMERIVN 248
MI+G C M + EA +++ +M+ +G+EP Y ++ ++ L L+ M+ N
Sbjct: 641 MINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDAMKSKEN 700
Query: 249 QMESDG---------TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299
M+ + D +C +++ + N + + +M D G+ TY +
Sbjct: 701 MMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTA 760
Query: 300 VLNS 303
+L+
Sbjct: 761 LLSG 764
>gi|15239614|ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18950
gi|332005249|gb|AED92632.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 483
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +MI G CE G A L EM KG+ P+ F Y +I+G+ + G + +E N
Sbjct: 318 RVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYN 377
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M +G + N ++ + H + + M ++G+ + TYN+++
Sbjct: 378 EMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALI 430
>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
Length = 794
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 94/200 (47%), Gaps = 18/200 (9%)
Query: 110 NPKLV--AEIIAFLDKQGQREEA----ETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
NP V +I L K G+ E+A E +I E LS G+ + Y +LI S C D
Sbjct: 406 NPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP-GN------IVYNSLIHSLCIFD 458
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+D + ++++ + + S+I C+ G+ E+E L + M G++P
Sbjct: 459 K---WDKAKELILEMLDRG--ICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPD 513
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GY G +++ +++ M S G + D V N +++ Y + + ++ +
Sbjct: 514 IITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFR 573
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M+ SG+ + TYN +L
Sbjct: 574 EMESSGVSPDIITYNIILQG 593
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 55/109 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ LC+ G+ EA + + M +GL+P Y ++ GY G L +M +++ M +
Sbjct: 309 SLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRN 368
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G + ++++ +Y ++ + +L KM+ G+ TY +V+
Sbjct: 369 GIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/164 (20%), Positives = 69/164 (42%), Gaps = 5/164 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ F K D Y +++++ + S+I+ LC+ +A
Sbjct: 199 VVSYTTVINGFFKEGD---LDKAYGTYHEMLDRG--ILPNVVTYSSIIAALCKAQAMDKA 253
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ M G+ P+ Y I++GY G ++ + +M SDG D V N ++
Sbjct: 254 MEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDY 313
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
+ + M G+ + TY ++L +T ++++
Sbjct: 314 LCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVE 357
Score = 38.5 bits (88), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 81/186 (43%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC---KHDSKRGFDDTYARLNQLV 179
K+G+ E+E L + + ++G + ++ Y LID +C K D +L+
Sbjct: 491 KEGRVIESEKL-FDLMVRIGVKPD--IITYSTLIDGYCLAGKMDEA----------TKLL 537
Query: 180 NSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
S SV +K + ++I+G C++ + +A L EM G+ P Y I+ G +
Sbjct: 538 ASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQT 597
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ + + GT+++ N++L +N + Q + + + RT+
Sbjct: 598 RRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTF 657
Query: 298 NSVLNS 303
N ++ +
Sbjct: 658 NIMIGA 663
>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
Length = 670
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 106/250 (42%), Gaps = 48/250 (19%)
Query: 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
+ + EE + N + + +I+ L K+G+ +EA L E K G +V Y +ID
Sbjct: 362 LALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVK-GYELNTIV--YSAVIDG 418
Query: 159 FCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKS---------------------- 194
C+ D K DD L+++ N + + Y +K
Sbjct: 419 LCR-DGKP--DDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNF 475
Query: 195 ---------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+I GLC+ G+ EA + +M KG +P Y +I G GL+ED +
Sbjct: 476 TQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQ 535
Query: 246 IVNQMESDG--TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N+M G ++ D V N++L++ + +SR + L M D G + L +
Sbjct: 536 LYNEMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGC-------DPDLVT 588
Query: 304 CSTIMSMLQD 313
C+ + ML++
Sbjct: 589 CTIFLRMLRE 598
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/270 (18%), Positives = 106/270 (39%), Gaps = 23/270 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V YC L+D CK D D+ + L+++ + +I+GLC+ G A
Sbjct: 234 VYTYCTLMDGLCKADR---IDEAVSLLDEM--QIDGCFPSPVTFNVLINGLCKKGDLSRA 288
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L++ M +KG P+ Y +I+G G LE ++++M S + V +++
Sbjct: 289 AKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIING 348
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLS 322
L M++ G + Y+++++ M + +++ + L+
Sbjct: 349 LVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELN 408
Query: 323 ILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFII 374
+ + V++ ++ V V+ E+ + A S L G+++ +
Sbjct: 409 TIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSS----LMKGFFEAGNSHRAV 464
Query: 375 LQWMDEMRNRFNNEKHVIPAEITVVCGSGK 404
W D ++ F + I +C GK
Sbjct: 465 EVWKDMAKHNFTQNEVCYSVLIHGLCKDGK 494
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I +C++G +A + +M ++ EP + Y ++ G + +++ ++++M+ DG
Sbjct: 205 VIKAMCKVGLVDDAIQVFRDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDG 264
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
V N++++ +LSR + M G IP V TYN++++
Sbjct: 265 CFPSPVTFNVLINGLCKKGDLSRAAKLVDNMFLKGCIPNEV-TYNTLIHG 313
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA L +EM+ G+ P+ Y +I+G+ R G LED + + N+M G
Sbjct: 670 IIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 729
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+++ V ++++ + ++ + + QKM+
Sbjct: 730 VQLNAVTYSVMIHGFCKEGQIDKAL--FQKME 759
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 83/183 (45%), Gaps = 11/183 (6%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSS 184
R T + ++ KLG R + Y L+ C+ G + L+Q ++N +S
Sbjct: 59 HRISEATQLFMSMKKLGCRPDAIA--YGTLMKGLCQ----TGKINIALHLHQEMLNDTSQ 112
Query: 185 VYVK-RQALKS---MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+K + L S +I GLC+ + EA L +EM+ +G+ P Y +I+G+ R G
Sbjct: 113 YGIKCKPTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKW 172
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E + + N+M G R D S+M++ ++ L+ M G + TY+++
Sbjct: 173 EKAKCLFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTL 232
Query: 301 LNS 303
+
Sbjct: 233 IKG 235
Score = 45.8 bits (107), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA L +EM+ G+ P Y +I+G+ R G +D + + N+M G
Sbjct: 489 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 548
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ D ++++ ++ L+ M G IP +V TY +++
Sbjct: 549 VQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTV-TYTTLVKG 597
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 11/146 (7%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSS 184
R T + ++ KLG R + Y L+ C+ G +T +L+Q ++N +
Sbjct: 240 HRISEATRLFMSMQKLGCRPDAIA--YGTLMKGLCQ----TGNINTALQLHQEMLNDTGR 293
Query: 185 VYVKRQ----ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+K + + +I GLC+ + EA L +EM+ +G+ P Y +I+G+ G
Sbjct: 294 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKW 353
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVL 266
E + + N+M G + D S++++
Sbjct: 354 EKAKCLFNEMLDVGIQPDVTTSSVLI 379
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + G+ + V+ Y +ID CKH + + + + L V +
Sbjct: 649 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKAL-----GVIPNVISYT 703
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C G+ +A++L EM +G++ + Y +I+G+ + G ++ + + +ME++
Sbjct: 704 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID--KALFQKMEAN 761
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 32/240 (13%)
Query: 26 TLVQ--CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLS- 82
TLV+ C+ R++K Q FL L + + L+ S IAL ++LS
Sbjct: 412 TLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSD 471
Query: 83 --PDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK 140
P + + +++++ + II L K G+ +EA L E +
Sbjct: 472 TSPYGINCKPNAISYSI-------------------IIDGLCKCGREDEARELFKE-MKA 511
Query: 141 LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
LG V+ Y +LI FC+ + D N++V+ V +I LC
Sbjct: 512 LGVIPD--VISYTSLIHGFCRSGK---WKDAKYLFNEMVDIG--VQPDVTTFSVLIDMLC 564
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G+ EA L+E M +G P+ Y ++ G + + ++ +M+ G D V
Sbjct: 565 KEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVV 624
>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1245
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 74/153 (48%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +ID CK+ GF D+ LN++ S + ++I+G C +G+ A+
Sbjct: 406 YTGMIDGLCKN----GFLDEAVVMLNEM--SKDGIDPDIVTYSALINGFCRVGRLKTAKE 459
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ + GL P+G Y +IY R+G L++ RI M +G D N++++S
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLC 519
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ +++ M GI + +++ ++N
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNAVSFDCLING 552
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 152 YCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y L+D CK+ D RGF Y R+ + + V V R MI GLC+ G EA
Sbjct: 371 YGVLLDGLCKNAEFDLARGF---YMRMKR-----NGVCVGRITYTGMIDGLCKNGFLDEA 422
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ EM G++P Y +I G+ R+G L+ + IV ++ G
Sbjct: 423 VVMLNEMSKDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVG 468
Score = 46.6 bits (109), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 80/185 (43%), Gaps = 8/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G +EA ++L +SK G ++ Y LI+ FC+ + + R+
Sbjct: 409 MIDGLCKNGFLDEA-VVMLNEMSKDGIDPD--IVTYSALINGFCRVGRLKTAKEIVCRIY 465
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ S + + ++I C MG E + E M ++G P F + ++ +
Sbjct: 466 RVGLSPNGI-----IYSTLIYNCCRMGCLKETIRIYEAMILEGNTPDHFTFNVLVTSLCK 520
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + E + M SDG + V + +++ YG E + +M G + T
Sbjct: 521 AGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFT 580
Query: 297 YNSVL 301
Y S+L
Sbjct: 581 YGSLL 585
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC G ++ L+++M G P+ Y +++ Y + G + +++ M G
Sbjct: 199 LINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMNLKG 258
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D NM++ N ++ L L+ M+ I + TYN++LN S
Sbjct: 259 VNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFS 309
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 7/155 (4%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN LI + CK + D + ++V S+ S+ISGLC G+ A
Sbjct: 616 CNTLITAMCKSGN---LDKAVSLFGEMV--QRSILPDSFTYTSLISGLCRKGKTVIAILF 670
Query: 212 IEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+E +G L P+ Y C + G + G + QM+ G D V +N ++ Y
Sbjct: 671 AKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLTRDVVTTNAMIDGYS 730
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
++ + L +M + ++ TYN +L+ S
Sbjct: 731 RMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYS 765
Score = 38.9 bits (89), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 55/123 (44%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+S + + +I+G G+ +A ++ +EM G P+ F Y ++ G + G L
Sbjct: 535 TSDGILPNAVSFDCLINGYGSSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 594
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E+ + +++ VDTV N ++++ L + V +M I TY S+
Sbjct: 595 IAAEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSL 654
Query: 301 LNS 303
++
Sbjct: 655 ISG 657
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
N + S C S DD A +++ S + + G C G+ EAE + +
Sbjct: 297 NTLISACSQGSN--LDDAVAVFEEMIASECRPDLWTYNAMVSVHGRC--GKAQEAELMFK 352
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
E+ KG +P Y ++Y + + G +E +ER+ ++ G R D + N ++ YG
Sbjct: 353 ELVEKGFQPDAVTYNSLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMG 412
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L + +M+ G TY +++S
Sbjct: 413 RLDLALGLYDEMRAIGCTPDAVTYTVLVDS 442
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 113/261 (43%), Gaps = 47/261 (18%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+AE+L+ M+ G+EP+ ++ YG G ++ E+++N ++S + T+ + VL
Sbjct: 1045 KAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLEISTLPYSTVL 1104
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS---------TIMSMLQDLNSN 317
+Y + + S + L +MK G+ + + S + + S ++ LQD
Sbjct: 1105 DAYLRNRDYSLGITKLLEMKRDGVEPDHQVWTSFIRAASLCEQTDDAILLLKSLQDCGF- 1163
Query: 318 DFPLSIL-ELTEVLNEEEVSVVKE---LEDSSVLD-----EAMKW--------------- 353
D P+ +L E T L E S +++ LEDS+ L+ E + W
Sbjct: 1164 DLPIRLLTERTSSLFTEVDSFLEKLGTLEDSASLNFVNALEDLLWAFERRATASWIFQLA 1223
Query: 354 -------------DSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVC 400
+ + DL + G+A + W+D+M++ P I +V
Sbjct: 1224 VKRSIYHHNIFRVEEKDWGADLRKLSAGAALVALTLWLDQMQDASLQGAPESPKSIVLVT 1283
Query: 401 GSGKHSTVRGESSVKAMVKKM 421
G G+++ V +++A + +M
Sbjct: 1284 GEGEYNMVSLRKTIRAYLLEM 1304
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 60/120 (50%), Gaps = 2/120 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S++ + G E + EE+ G G Y +I+ YG++G L+ + ++M +
Sbjct: 368 SLLYAFAKEGDVERVERVCEELVKAGFRKDGITYNTMIHMYGKMGRLDLALGLYDEMRAI 427
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
G D V +++ S G + +S L++M D+G+ ++ T+++++ C+ S QD
Sbjct: 428 GCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALI--CAYAKSGRQD 485
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+P E L+ EM +GL P YK ++ G+ L E + + +M + G R++ +
Sbjct: 972 RPEEGFTLLYEMGKRGLTPKLESYKILLAASGKAKLWEQADLLFEEMRTKGYRLNRSIYH 1031
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------IMSMLQDLNSN 317
M++ Y + S+ L MK+ GI ++ T + ++ S T +L L S+
Sbjct: 1032 MMMKIYRNARNHSKAEHLLSAMKEDGIEPTIATMHILMTSYGTSGHPDEAEKVLNSLKSS 1091
Query: 318 DFPLSILELTEVLN 331
+ +S L + VL+
Sbjct: 1092 NLEISTLPYSTVLD 1105
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/248 (22%), Positives = 105/248 (42%), Gaps = 38/248 (15%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ L +M + EA ++EEM GL+P+ + +I Y + G +D ER ++M G
Sbjct: 439 LVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSGRQDDAERTFDRMVESG 498
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL------NSCSTIM 308
+ D + ++L + +E ++++ + M G Y +L N I
Sbjct: 499 VKPDRLAYLVMLDVFARSDETRKLMVLYRAMIKDGYKPDDGLYQVLLAALAKGNEHDEIE 558
Query: 309 SMLQDLNSNDFPLSILELTEVLNEEE-----VSVVKEL------EDS----SVLDEAMKW 353
++QD+ + F ++ L ++ +L + E S++K D S+LD K
Sbjct: 559 GVIQDMEAV-FEMNPLVISSILIKAECISQGASLLKRACLQGYEPDGKSLLSILDAYEKM 617
Query: 354 DSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIP-AEITVVCGSGKHSTVRGES 412
E L L L+W +R N ++I I ++C +GK E
Sbjct: 618 GKHEKGLSL------------LEW---IRQHVPNSHNLISECSIMLLCKNGKIVDAIQEY 662
Query: 413 SVKAMVKK 420
S K M+K+
Sbjct: 663 SRKQMLKR 670
>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
Length = 418
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR-L 175
+I L K+ + EA L E L K G + + LID CK+ +TY + L
Sbjct: 212 LINGLCKESKMNEANDLFNEMLDK-GLVPNGVT--FTTLIDGHCKNGKVDSAMETYKQML 268
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+Q Y ++I GLC+ G +A++L++EMR+KGL+P Y +I G
Sbjct: 269 SQCFLPDLITY------NTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNC 322
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G L+ + M + R+D V ++S + L++M G+
Sbjct: 323 KEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNG 382
Query: 296 TYNSVLN 302
TY ++N
Sbjct: 383 TYTMIIN 389
Score = 45.4 bits (106), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 10/146 (6%)
Query: 111 PKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L+ +I L K+G ++A+ L+ E K G + ++ Y LID CK
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLLDEMRMK-GLKPDKIT--YTTLIDGNCKEGD---L 327
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D + +V S + + A ++ISGLC+ G+ +AE ++ EM GL+P Y
Sbjct: 328 DSAFELRETMVKES--IRLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYT 385
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDG 254
II + + ++ +++ +M+ G
Sbjct: 386 MIINEFCKKEDVKTAAKLLKEMQRQG 411
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +L++ FC HD
Sbjct: 287 KINPNLVTFNALIDAFV-KEGKFVEAEKLYDDMIKRSIDPD---IFTYNSLVNGFCMHDR 342
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 343 ---LDKAKQMFEFMV--SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 397
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 398 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 457
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 458 MQKSEIKLDIYIYTTMI 474
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 88 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R DT+ ++ HN+ S V + +M G ++ TY V+N L
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-------LCKR 200
Query: 315 NSNDFPLSILELTEVLN-EEEVSVVKELEDS 344
D L++L E E +V + + DS
Sbjct: 201 GDTDLALNLLNKMEAAKIEADVVIFNTIIDS 231
Score = 41.6 bits (96), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 44/288 (15%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNAL 77
C R+ +++L L ++ K G S + L+ + + IS VA Q + +
Sbjct: 91 CFCRRSQISLALALLGKMMKLGYE-PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG-- 147
Query: 78 SHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILET 137
PDT ++L L++ +E +A +D+ QR L+
Sbjct: 148 ---YRPDTI--TFTTLIHGLFLH-----------NKASEAVALVDRMVQRGCQPNLVT-- 189
Query: 138 LSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSM 195
Y +++ CK RG DT LN L+N + ++ + ++
Sbjct: 190 --------------YGVVVNGLCK----RG--DTDLALN-LLNKMEAAKIEADVVIFNTI 228
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I LC+ +A NL +EM KG+ P+ Y +I G D ++++ M
Sbjct: 229 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 288
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ + M I + TYNS++N
Sbjct: 289 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 336
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E + N + +I+ L G+ +A L+ + + K LV F LID+F K
Sbjct: 249 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTFNA-LIDAFVKE 305
Query: 163 ----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
++++ +DD R S+ S+++G C + +A+ + E M K
Sbjct: 306 GKFVEAEKLYDDMIKR---------SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 356
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
P Y +I G+ + +ED + +M G DTV ++ +
Sbjct: 357 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 416
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
++M G+P + TY+ +L+
Sbjct: 417 QKVFKQMVSDGVPPDIMTYSILLDG 441
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA L +EM+ G+ P+ Y +I+G+ R G LED + + N+M G
Sbjct: 826 IIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQG 885
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+++ V ++++ + ++ + + QKM+
Sbjct: 886 VQLNAVTYSVMIHGFCKEGQIDKAL--FQKME 915
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 11/183 (6%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSS 184
R T + ++ KLG R + Y L+ C+ G + +L+Q ++N +
Sbjct: 103 HRISEATWLFMSMQKLGCRPDAIT--YGTLMKGLCQ----TGNINIALQLHQEMLNDTGR 156
Query: 185 VYVKRQ----ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+K + + +I GLC+ + EA L +EM+ +G+ P Y +I+G+ G
Sbjct: 157 YGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKW 216
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E + + N+M G + D S +++ + ++ L+ M G + TY+++
Sbjct: 217 EKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTL 276
Query: 301 LNS 303
+
Sbjct: 277 IKG 279
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 56/262 (21%), Positives = 114/262 (43%), Gaps = 32/262 (12%)
Query: 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-- 87
C+ R+++ Q F+S L D+ A L+ + IAL+ +L+ + +
Sbjct: 281 CMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGI 340
Query: 88 ----PRLSSLAFPLYMRITEESWFQWNPKL--------VAEIIAF------LDKQGQREE 129
P +++ + + + E + N L + +I+ + L + + E
Sbjct: 341 KCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISE 400
Query: 130 AETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSSVYVK 188
A T + ++ KLG R + Y L+ C+ G + +L+Q ++N + +K
Sbjct: 401 A-TWLFMSMQKLGCRPDAIT--YGTLMKGLCQ----TGNINIALQLHQEMLNDTGRYGIK 453
Query: 189 RQ----ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + +I GLC+ + EA L EEM+ +G+ P Y +I+G+ G E +
Sbjct: 454 CKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK 513
Query: 245 RIVNQMESDGTRVDTVCSNMVL 266
+ N+M G + D S++++
Sbjct: 514 CLFNEMLDVGIQPDVTTSSVLI 535
Score = 45.8 bits (107), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC+ G+ EA L +EM+ G+ P Y +I+G+ R G +D + + N+M G
Sbjct: 645 IIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIG 704
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
+ D ++++ ++ L+ M G IP +V TY +++
Sbjct: 705 VQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTV-TYTTLVKG 753
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + G+ + V+ Y +ID CKH + + + + L V +
Sbjct: 805 MLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKAL-----GVIPNVISYT 859
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G C G+ +A++L EM +G++ + Y +I+G+ + G ++ + + +ME++
Sbjct: 860 SLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQID--KALFQKMEAN 917
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 32/240 (13%)
Query: 26 TLVQ--CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLS- 82
TLV+ C+ R++K Q FL L + + L+ S IAL ++LS
Sbjct: 568 TLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSD 627
Query: 83 --PDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK 140
P + + +++++ + II L K G+ +EA L E +
Sbjct: 628 TSPYGINCKPNAISYSI-------------------IIDGLCKCGREDEARELFKE-MKA 667
Query: 141 LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
LG V+ Y +LI FC+ + D N++V+ V +I LC
Sbjct: 668 LGVIPD--VISYTSLIHGFCRSGK---WKDAKYLFNEMVDIG--VQPDVTTFSVLIDMLC 720
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G+ EA L+E M +G P+ Y ++ G + + ++ +M+ G D V
Sbjct: 721 KEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVV 780
>gi|224121504|ref|XP_002318601.1| predicted protein [Populus trichocarpa]
gi|222859274|gb|EEE96821.1| predicted protein [Populus trichocarpa]
Length = 485
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 75/162 (46%), Gaps = 32/162 (19%)
Query: 117 IIAFLDKQGQREEAET--LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+I+ L K+G+ + +T L+ ETL KLG RE E + + NL C D GF
Sbjct: 129 LISDLRKEGRVMDPQTFALVAETLVKLG-REDEALGIFKNLEKFKCPQD---GF------ 178
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI---EEMRVKGLEPSGFEYKCII 231
A+ ++IS LC G +A+ + + ++ GLEP Y+C++
Sbjct: 179 ----------------AVTAIISALCAKGHAKKAQGVFSHHKNNKISGLEPC-VVYRCLL 221
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
YG+ +++ +I+ +M+ DG D C N L + N
Sbjct: 222 YGWSVQENVKEARKIIQEMKGDGLIPDLFCYNTFLKCLCERN 263
>gi|255686078|gb|ACU28528.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 147
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 10 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 69
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 70 GYFPDIFTFNILIHGYSTQLKIENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 123
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 41 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKIENALEILDV 100
Query: 250 MESDGTRVDTVCSNMVLSS 268
M +G D N +L+
Sbjct: 101 MLDNGVDPDVYTYNSLLNG 119
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 86/194 (44%), Gaps = 16/194 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ +EA L+ + + Y +LI C++ R D + +
Sbjct: 203 MINILCKKGKVQEA-VLVFNKIFQFDLCPDAFT--YTSLILGHCRN---RKLDKAFEVFD 256
Query: 177 QLV----NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++V N +S Y ++I+GLC G+ EA +++EEM KG+EP+ + Y I
Sbjct: 257 RMVKDGCNPNSVTY------STLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPIS 310
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
+G ++D +V M G ++S ++ + KM G+
Sbjct: 311 SLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVP 370
Query: 293 SVRTYNSVLNSCST 306
+ TYN+++N T
Sbjct: 371 NTVTYNALINELCT 384
Score = 45.1 bits (105), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
SS V +MI+ LC+ G+ EA + ++ L P F Y +I G+ R L+
Sbjct: 190 SSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLD 249
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ ++M DG ++V + +++ + + + L++M + GI +V TY +
Sbjct: 250 KAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPI 309
Query: 302 NSCSTI 307
+S I
Sbjct: 310 SSLCDI 315
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 39/235 (16%)
Query: 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLID 157
++ + +ES + + + E+I+ K G+ + A + E L K G + Y +ID
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEML-KCGISPNQWT--YTAMID 520
Query: 158 SFCKHDS------------KRGFDDTYARLNQLVNSSSS-----------VYVKRQALK- 193
+CK + G + N +++ S + Q L+
Sbjct: 521 GYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQP 580
Query: 194 ------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
S+I+GLC+ + A + EM K P+ Y +IYG + G ++ ER+
Sbjct: 581 NTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERLT 640
Query: 248 -NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N E T+ S L G NE S++V + MK+ G+ S+ Y S+L
Sbjct: 641 ENGCEPTIDTYSTLVSG--LCREGRSNEASQLV---ENMKEKGLSPSMEIYCSLL 690
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 16/237 (6%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N L H L R+S A L+ ++ E + + N ++ L ++G+
Sbjct: 147 PDVVTFNTLLHGLC---VEDRVSE-ALNLFHQMFETTC-RPNVVTFTTLMNGLCREGRIV 201
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL--VNSSSSVY 186
EA L L+ + + G + ++ Y ++D CK DT + LN L + S +
Sbjct: 202 EAVAL-LDRMMEDGLQPTQIT--YGTIVDGMCKKG------DTVSALNLLRKMEEVSHII 252
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++I LC+ G+ +A+NL EM+ KG+ P F Y +I G+ G D E++
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M D V N +++++ + +M GI + TY+S+++
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 24/258 (9%)
Query: 53 DSKAASRLISKFVASS---PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
D+ +A L+ K S P + +A+ L D H +L + + F +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +V G+ +AE L+ E L + S + V+ Y LI++F K +++
Sbjct: 294 NSMIVG-----FCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAE 345
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+D+ R + SMI G C+ + AE++ M KG P+
Sbjct: 346 ELYDEMLPR---------GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +I GY ++D ++++M G DT N ++ + +L+ + LQ+M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 286 KDSGIPFSVRTYNSVLNS 303
SG+ + T +++L+
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYA 173
+I+ L +G+ EAE L E R +V + Y ++ID CK D+
Sbjct: 517 LISGLINEGKFLEAEELYEEM------PHRGIVPDTITYSSMIDGLCKQSR---LDEATQ 567
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S S V ++I+G C+ G+ + L EM +G+ + Y +I G
Sbjct: 568 MFDSMGSKSFSPNV--VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++G + I +M S G DT+ +L+ EL R V L+K++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678
Score = 45.8 bits (107), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A I AF+ K+G+ EAE L E L + G + Y ++ID FCK + + +
Sbjct: 330 ALINAFV-KEGKFFEAEELYDEMLPR-GIIPNTIT--YSSMIDGFCKQNRLDAAEHMFYL 385
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ S + + ++I G C + + L+ EM GL Y +I+G+
Sbjct: 386 MATKGCSPNLI-----TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS---RMVLWLQKMK---DS 288
+G L ++ +M S G D V + +L D+ +L M +QK K D+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500
Query: 289 GIPFS-----VRTYNSVLNS 303
PF+ V+TYN +++
Sbjct: 501 SHPFNGVEPDVQTYNILISG 520
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI GLC+ + EA + + M K P+ + +I GY + G ++D + +M
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR 610
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + ++ + ++ + Q+M SG+
Sbjct: 611 GIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Score = 38.1 bits (87), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +ISGL G+ EAE L EEM +G+ P Y +I G + L++ ++ +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
M S + V +++ Y + + +M GI + TY +++
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
>gi|115463377|ref|NP_001055288.1| Os05g0355200 [Oryza sativa Japonica Group]
gi|55168028|gb|AAV43896.1| unknown protein [Oryza sativa Japonica Group]
gi|55168069|gb|AAV43937.1| unknown protein [Oryza sativa Japonica Group]
gi|113578839|dbj|BAF17202.1| Os05g0355200 [Oryza sativa Japonica Group]
Length = 632
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI GL + EA + E M+ KG P+ + Y +I + + G ++ R +M+
Sbjct: 364 TMIEGLLRGQRRPEAVKMFELMKAKGPAPNVWTYTMLIRDHCKRGKMDMAMRCFEEMQDV 423
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + D +L YG+ + R+ L++M G P RTYN+++
Sbjct: 424 GCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKGCPPDGRTYNALI 471
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C+ G+ A EEM+ G +P Y C++ GYG ++ + ++ +M G
Sbjct: 400 LIRDHCKRGKMDMAMRCFEEMQDVGCQPDVATYTCLLVGYGNAKRMDRVTALLEEMTQKG 459
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++ + N +KM G+ ++ TYN ++ S
Sbjct: 460 CPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKS 508
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 47/114 (41%), Gaps = 13/114 (11%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY- 269
L+EEM KG P G Y +I + +D RI +M G NM++ SY
Sbjct: 451 LLEEMTQKGCPPDGRTYNALIKLLTNRNMPDDAARIYKKMIKKGLEPTIHTYNMMMKSYF 510
Query: 270 -GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN----------SCSTIMSMLQ 312
G N + +W ++M GI V +Y +N +C I M+Q
Sbjct: 511 LGGRNYMMGCAVW-EEMHRKGICPDVNSYTVFINGHIRHGRPEEACKYIEEMIQ 563
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 85/186 (45%), Gaps = 8/186 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G+ EAE ++ + S + V Y +LI C++ R D + +
Sbjct: 204 LINILSKKGKVREAELILSQIFQYDLSPD---VFTYTSLILGHCRN---RNLDLAFGVFD 257
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++V ++I+GLC G+ EA +++EEM KG+EP+ + Y I
Sbjct: 258 RMVKEGCDP--NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCA 315
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
+ E+ +V +M+ G R + ++S +L + KM G+ + T
Sbjct: 316 IEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVT 375
Query: 297 YNSVLN 302
YN+++N
Sbjct: 376 YNALIN 381
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 21/205 (10%)
Query: 117 IIAFLDKQGQREEAETL--ILETLSKLGSRERELVLF--------------YCNLIDSFC 160
++A + K+G R +T ++ LS+LG E + L+ Y LI+ C
Sbjct: 325 LVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELC 384
Query: 161 KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL 220
G T ++ + S+ Q +I GLC G +A L E+M G
Sbjct: 385 VG----GRFSTALKIFHWMEGHGSL-ANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGP 439
Query: 221 EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y +I GY G + + R+++ M+ +G D N ++S + +L
Sbjct: 440 LPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASF 499
Query: 281 WLQKMKDSGIPFSVRTYNSVLNSCS 305
+ Q+M + G+ + +Y ++++ S
Sbjct: 500 YFQEMVECGLNPNPVSYTALIDGHS 524
Score = 45.4 bits (106), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+G G + A L++ M+ G EP + Y ++ G+ + G LE +M
Sbjct: 448 TLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G + V ++ + ++ + L++M++ G +V +YN+V+N S
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559
Score = 43.5 bits (101), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 84/205 (40%), Gaps = 16/205 (7%)
Query: 107 FQW--------NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158
F W N + EII L G E+A L E + K+G V+ Y LI+
Sbjct: 396 FHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVL-FEKMLKMGPLPT--VVTYNTLING 452
Query: 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
+ +G + ARL L+ + ++SG + G+ A +EM
Sbjct: 453 YLT----KGNVNNAARLLDLM-KENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVEC 507
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
GL P+ Y +I G+ + G ++ ++ +ME G + N V++ N S
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
KM + G+ +V TY ++++
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDG 592
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 80/191 (41%), Gaps = 24/191 (12%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----SKRGFDDTY 172
+I L K+ + EAE I + + + G V+ Y LID C++ + + F D
Sbjct: 554 VINGLSKENRFSEAEK-ICDKMVEQGLLPN--VITYTTLIDGLCRNGRTQFAFKIFHDME 610
Query: 173 AR--LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230
R L L SS +Y GLC+ G+ EAE + E G EP+ Y +
Sbjct: 611 KRKCLPNLYTYSSLIY-----------GLCQEGKADEAERMSE----IGCEPTLDTYSTL 655
Query: 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ G R G + E++V M+ G D +L ++ + E+ + ++ G
Sbjct: 656 VSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGF 715
Query: 291 PFSVRTYNSVL 301
+ Y +++
Sbjct: 716 QLHLSIYRALI 726
Score = 38.1 bits (87), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNS 181
K + EE + + L+++ L+ CN L+ K + G + Y Q++NS
Sbjct: 136 KACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLY---KQMLNS 192
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ ++I+ L + G+ EAE ++ ++ L P F Y +I G+ R L+
Sbjct: 193 G--IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLD 250
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+ ++M +G ++V + +++ + + + L++M + GI +V TY
Sbjct: 251 LAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTY 306
>gi|255686016|gb|ACU28497.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686018|gb|ACU28498.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686020|gb|ACU28499.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686022|gb|ACU28500.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686024|gb|ACU28501.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686026|gb|ACU28502.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686028|gb|ACU28503.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686030|gb|ACU28504.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686036|gb|ACU28507.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686038|gb|ACU28508.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686040|gb|ACU28509.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686042|gb|ACU28510.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686044|gb|ACU28511.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686048|gb|ACU28513.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686050|gb|ACU28514.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686052|gb|ACU28515.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686054|gb|ACU28516.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686056|gb|ACU28517.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 12 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 71
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 72 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 125
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 43 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 102
Query: 250 MESDGTRVDTVCSNMVLSS 268
M +G D N +L+
Sbjct: 103 MMDNGVDPDVYTYNSLLNG 121
>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 562
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/154 (20%), Positives = 71/154 (46%), Gaps = 5/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y +IDS CK D Y+ + S ++ ++I+G C +G+ +A
Sbjct: 241 LVMYNTIIDSMCKDKLDNDAFDLYSEM-----VSKRIFPDVNTYNALINGFCIVGKLKDA 295
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L +M + + P + + ++ + + G +++ + + M G + D V N ++
Sbjct: 296 IGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDR 355
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
Y NE+++ M G+ +VR+Y+ ++N
Sbjct: 356 YCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMIN 389
Score = 46.2 bits (108), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 149 VLFYCNLIDSFCKHD----SKRGFDDTYARLNQLVNSSSSVYVKRQALKS-------MIS 197
V+ Y +LID CK + D+ + R Q + + +K Q ++ +I
Sbjct: 416 VITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILID 475
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
GLC+ G+ +A N+ E++ VKG + Y +I+G+ GL ++ ++++M+ +
Sbjct: 476 GLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIP 535
Query: 258 DTVCSNMVLSSYGDHNE 274
+ V +++ S D++E
Sbjct: 536 NAVTYEIIIRSLFDNDE 552
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 194 SMISGLCEMGQPHEAENLIEEM----------------RVKGLEPSGFEYKCIIYGYGRL 237
S+I GLC+ G+ A L +EM + +G+ P+ F Y +I G +
Sbjct: 421 SLIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKG 480
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS-GIPFSVRT 296
G LED I + G + +++ + + + L KMKD+ IP +V T
Sbjct: 481 GRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDNCCIPNAV-T 539
Query: 297 YNSVLNS 303
Y ++ S
Sbjct: 540 YEIIIRS 546
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 5/159 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y L++ FC+ + +D + + + + ++I G C+ G+ A +
Sbjct: 385 YNALVNGFCRVRDMKAANDIVEEMRK-----DGLKPDKVTYTTLIDGCCKEGELDTAMEM 439
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM +G+ Y +I G + G D ERI+ +M G + D MV+ ++
Sbjct: 440 KQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCK 499
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ ++ L++M++ G + TYN V+N ++ M
Sbjct: 500 NGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQM 538
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 83/175 (47%), Gaps = 7/175 (4%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
+A I+E + K G + ++ Y LID CK G DT + Q + S V +
Sbjct: 399 KAANDIVEEMRKDGLKPDKVT--YTTLIDGCCKE----GELDTAMEMKQEM-SDEGVALD 451
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
++ISGL + G+ +AE ++ EM GL+P Y +I + + G ++ + +
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 511
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M++ G V N+V++ + ++ + L M + G+ + TYN +L+
Sbjct: 512 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDG 566
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 10/131 (7%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARL 175
+I+ L K G+ +AE ++ E + + G + Y +ID+FCK+ D K GF
Sbjct: 458 LISGLSKAGRSVDAERILCEMM-EAGLQPDNTT--YTMVIDAFCKNGDVKTGFKHLKEMQ 514
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
N+ N Y +++G C +GQ A+ L+ M G+ P+ Y ++ G+
Sbjct: 515 NKGKNPGIVTY------NVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHC 568
Query: 236 RLGLLEDMERI 246
+ G + D E +
Sbjct: 569 KHGKVRDTEEL 579
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 50/114 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++I C+ G L EM +G++ Y ++ G+ R+ ++ IV +M
Sbjct: 350 LTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMR 409
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
DG + D V ++ EL + Q+M D G+ TY ++++ S
Sbjct: 410 KDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLS 463
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 52/119 (43%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+++SG+C+ + A L M G+ P + Y I G + G ++D + +M
Sbjct: 280 FNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMC 339
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
G +TV ++ ++ +++ + +M G+ + YN+++N + M
Sbjct: 340 ERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDM 398
>gi|18396782|ref|NP_566222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|79312733|ref|NP_001030630.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|218546763|sp|Q9M8W9.2|PP211_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04130, mitochondrial; Flags: Precursor
gi|332640519|gb|AEE74040.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332640520|gb|AEE74041.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 508
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLC 200
G R V+ Y +I +C+ F Y L+++ N S + +++S L
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFE---FIKVYEMLSEMEANGSPPNSI---TYTTIMSSLN 305
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMESDGTRVDT 259
+ EA + M+ G +P Y C+I+ R G LE+ ER+ +M G ++T
Sbjct: 306 AQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINT 365
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI--PFSVRTYNSVLNSC 304
N +++ Y H+E + + L++M+ S + P V TY +L SC
Sbjct: 366 STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNP-DVHTYQPLLRSC 411
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
VA+I+ G+ EEA I + L + G + + L+D+ CK ++ +
Sbjct: 158 VAKIMRRFAGAGEWEEA-VGIFDRLGEFGLEKNTESMNL--LLDTLCK---EKRVEQARV 211
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L QL S + I G C+ + EA I+EM+ G P Y II
Sbjct: 212 VLLQL---KSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC 268
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + + ++++ME++G+ +++ ++SS E + +MK SG
Sbjct: 269 YCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPD 328
Query: 294 VRTYNSVLNS 303
YN ++++
Sbjct: 329 SLFYNCLIHT 338
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 9/185 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I+ + +QG + A L L + G + ++ Y L+ C D ++ +++
Sbjct: 127 VISGMCEQGHVDSALEL-LSNMQSFGCKPD--IVTYNTLLKGLCSADQWEDAEELMIKMS 183
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
Q + ++IS LC+ G +A + ++M KG P+ Y II G +
Sbjct: 184 Q-----NDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAK 238
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E ++N+M S G D + ++ S +++ +V + K++DSGI
Sbjct: 239 AGKMEQALELLNEMASKGYNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVL 297
Query: 297 YNSVL 301
+N+VL
Sbjct: 298 FNTVL 302
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 72/155 (46%), Gaps = 9/155 (5%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK--SMISGLCEMGQPH 206
V+ Y +ID+ C R D AR +L+NS S K + +++ GLC + +
Sbjct: 16 VVTYNVIIDAMC-----REGDVDQAR--ELLNSLPSRGCKPNTVNYNTVLKGLCSIERWV 68
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+AE L++EM + P+ I+ R GLL+ + R + +M G + V N V+
Sbjct: 69 DAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVI 128
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
S + + + L M+ G + TYN++L
Sbjct: 129 SGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLL 163
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 74/166 (44%), Gaps = 13/166 (7%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISG+CE G A L+ M+ G +P Y ++ G ED E ++ +M +
Sbjct: 126 AVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQN 185
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST------I 307
D V N ++S + + ++M + G + TY++++ +
Sbjct: 186 DCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQA 245
Query: 308 MSMLQDLNSNDFPLSILE--LTEVLN-----EEEVSVVKELEDSSV 346
+ +L ++ S + + LTE LN EE V VV +L+DS +
Sbjct: 246 LELLNEMASKGYNTDKMYQLLTESLNKEDKIEEVVQVVHKLQDSGI 291
>gi|224576643|gb|ACN56995.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + R G + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCRXNGXAINSXFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMTLFKRMEEEEGCDQTVYTYTILISG 172
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q + +G + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCRXNGXAINSXFYSSLIDG 101
>gi|302826107|ref|XP_002994593.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
gi|300137364|gb|EFJ04344.1| hypothetical protein SELMODRAFT_138846 [Selaginella moellendorffii]
Length = 521
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 13/236 (5%)
Query: 68 SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR 127
SP +A N H+L + R +L R E+ + N +I K G+
Sbjct: 171 SPGPLACNTFLHVLEDAKEYRRAEAL-----FRDLEKYECEPNIDTYNRMIVIYGKAGEP 225
Query: 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187
+AE L + + + L+++F + R + + +L +
Sbjct: 226 SKAEMLYRSMRRAMCPPN---ICTFTALMNAFARQGLYREAERYFDKLQEFDYKPDHY-- 280
Query: 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
A +++ + G P A + + M+ G P + +I YGR GL ED E+I
Sbjct: 281 ---AYNALMEAYSQGGSPAGALEIFQTMQRNGCFPDTVSHNILINAYGRAGLYEDAEKIF 337
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M+S G + + ++LS+Y + + M+ G YNS++N+
Sbjct: 338 KSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDGTKPDTLIYNSLINA 393
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 56/110 (50%), Gaps = 3/110 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ G +AE + + M+ G P+ ++ Y R G +E+ E +V+ ME DG
Sbjct: 320 LINAYGRAGLYEDAEKIFKSMQSAGFSPNLKSNMLLLSAYARAGRVEEAEELVSAMERDG 379
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
T+ DT+ N ++++Y G H ++ ++ + K + TYN+++
Sbjct: 380 TKPDTLIYNSLINAYGVSGRHEDMEALLAKMVKSSSKQTKPDIGTYNTLI 429
>gi|224576649|gb|ACN56998.1| At1g03560-like protein [Capsella grandiflora]
Length = 196
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+ E + + GS+ V Y LID + K S +D L+++++ V ++
Sbjct: 9 VFENMIRKGSKPN--VAIYTVLIDGYAKSGS---VEDAIRLLHRMIDEGFKPDVVTYSV- 62
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++GLC+ G+ EA + + GL + Y +I G G+ G +++ ER+ +M
Sbjct: 63 -VVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDGLGKAGRIDEAERLFEEMSEK 121
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-KDSGIPFSVRTYNSVLNS 303
G D+ C N ++ + H ++ + ++M ++ G +V TY +++
Sbjct: 122 GCTRDSYCYNALIDALTKHGKVDEAMXLFKRMEEEEGCDQTVYTYTILISG 172
Score = 41.2 bits (95), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ +E + E M KG +P+ Y +I GY + G +ED R++++M +G + D V
Sbjct: 1 GKLNEGYAVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTY 60
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++V++ + + + + Q +G+ + Y+S+++
Sbjct: 61 SVVVNGLCKNGRVEEALDYFQTCXFNGLAINSMFYSSLIDG 101
>gi|357129397|ref|XP_003566348.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Brachypodium distachyon]
Length = 649
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI GL + EA + E M+ KG P+ + Y +I + + G L+ R +M+
Sbjct: 381 TMIDGLLRGQRRPEAVKMFELMKAKGPPPNVWTYTMLIRDHCKQGKLDMAMRCFEEMQVA 440
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + + +L YG+ + R+ L++M G P RTYN+++
Sbjct: 441 GCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKGCPPDGRTYNALI 488
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I C+ G+ A EEM+V G +P Y C++ GYG ++ + ++ +M G
Sbjct: 417 LIRDHCKQGKLDMAMRCFEEMQVAGCQPEVATYTCLLVGYGNAKRMDRVTAMLEEMAQKG 476
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N ++ + N V +KM G+ ++ TYN ++ S
Sbjct: 477 CPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKS 525
Score = 39.7 bits (91), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY- 269
++EEM KG P G Y +I + +D RI +M + G NM++ SY
Sbjct: 468 MLEEMAQKGCPPDGRTYNALIKLLTNRNMPDDAVRIYKKMITKGLEPTIHTYNMMMKSYF 527
Query: 270 -GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G N +W ++M GI V +Y +N
Sbjct: 528 LGGRNYAMGCAVW-EEMHRKGICPDVNSYTVFING 561
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 109/259 (42%), Gaps = 43/259 (16%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156
+Y ++ + N ++ L K + EEA L L+T+S G ++V Y LI
Sbjct: 595 MYFKLDDNDCETPNIITYGALVDGLCKANRVEEAHEL-LDTMSVNGCEPNQIV--YDALI 651
Query: 157 DSFCKHD------------SKRGFDDTYARLNQLVNS------------------SSSVY 186
D FCK S+RG+ + L+NS +S
Sbjct: 652 DGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCT 711
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
MI GLC++G+ EA L+ +M G P+ Y +I G+G++G +E +
Sbjct: 712 PNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGKIEQCLEL 771
Query: 247 VNQMESDGTRVDTVCSNMVLS---SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M S G + + ++++ S G +E R+ L +MK + P + +Y ++
Sbjct: 772 YRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRL---LDEMKQTYWPRHISSYRKIIEG 828
Query: 304 CS----TIMSMLQDLNSND 318
+ T + +L +L+ N+
Sbjct: 829 FNREFITSIGLLDELSENE 847
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVKRQ----------ALKSMIS 197
V+ Y LID CK YAR+ + SS +Y K +++
Sbjct: 558 VVTYTALIDGHCKAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVD 617
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
GLC+ + EA L++ M V G EP+ Y +I G+ + G LE+ + + +M G
Sbjct: 618 GLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCP 677
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +++S L ++ L KM ++ +V Y +++
Sbjct: 678 NLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDG 723
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 5/146 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+SGLCE EA ++++ MR P+ Y+ ++ G G L +RI++ M ++G
Sbjct: 278 MVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEG 337
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST---IMSM 310
+ N ++ +Y + S +KM G YN + S CS S
Sbjct: 338 CYPNREMFNSLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSD 397
Query: 311 LQDLNSNDFPLSILELTEVLNEEEVS 336
L +L + +L+L VLN+ VS
Sbjct: 398 LLELAEKAYS-EMLDLGVVLNKVNVS 422
Score = 38.5 bits (88), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/143 (23%), Positives = 62/143 (43%), Gaps = 22/143 (15%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ + +A L EEM+ G+ PS + Y +I + + GL++ ++M D
Sbjct: 459 VIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDN 518
Query: 255 TRVDTVCSNMVLSSY------GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN------ 302
+ V ++ +Y D N+L M+L G +V TY ++++
Sbjct: 519 CTPNVVTYTSLIHAYLKARKVFDANKLFEMMLL------EGSKPNVVTYTALIDGHCKAG 572
Query: 303 ----SCSTIMSMLQDLNSNDFPL 321
+C M D+ S+D +
Sbjct: 573 QIDKACQIYARMQGDIESSDIDM 595
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/200 (24%), Positives = 83/200 (41%), Gaps = 23/200 (11%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNL-IDSFCK----------------HDSK 165
K+G+ EAE E L K+ + + CN+ ID C H S
Sbjct: 352 KEGRISEAE----ELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSA 407
Query: 166 R--GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
++Y L +S + ++ISGLC+ G+ EA+ EM K L+P
Sbjct: 408 ALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPD 467
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y I+ + + G + R++ ME G N ++ G N++ + +
Sbjct: 468 SAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLID 527
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
+M++ G+ V YN+VL+S
Sbjct: 528 EMRERGVSPDVSIYNNVLSS 547
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 77/161 (47%), Gaps = 8/161 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ EA+ L+L+ + +G V Y ++D CK+ FD AR+ + +SS
Sbjct: 249 GKLLEAQ-LVLKEMVDMGMEPN--VYSYNIVMDGLCKNGVL--FD---ARMLMRLMTSSG 300
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V +++ G C G+ EA N++ EM G P+ + ++Y + G + + E
Sbjct: 301 VLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAE 360
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
++ +M G +DTV N+V+ ++ +L + + + M
Sbjct: 361 ELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAIEIVNGM 401
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 1/126 (0%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S V + +I LC+ G +A L ++M KG EP+ + + ++ GY R G
Sbjct: 49 ASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTS 108
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ +M G + V N ++SS+ + + +M+ G+ V T+N+ +
Sbjct: 109 KGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARI 168
Query: 302 NS-CST 306
++ CS+
Sbjct: 169 SALCSS 174
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ G +A L+ M G+ P Y +++GY G + + ++ +M DG
Sbjct: 276 VMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDG 335
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N++L S +S LQKM + G T N V++
Sbjct: 336 CSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDG 384
Score = 44.7 bits (104), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 23/197 (11%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
+ R++ + GL +G+ EA+ +++EM G+EP+ + Y ++ G + G+L D +
Sbjct: 233 MNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARML 292
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS--- 303
+ M S G DTV +L Y ++S L++M G + T N +L S
Sbjct: 293 MRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWK 352
Query: 304 ---CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMK-----WDS 355
S +LQ +N + + + V+ L ++ LD+A++ W
Sbjct: 353 EGRISEAEELLQKMNEKGYVIDTVTCN--------IVIDGLCNNGKLDKAIEIVNGMWTH 404
Query: 356 GETKLDLHGMHLGSAYF 372
G L +LG++Y
Sbjct: 405 GSAALG----NLGNSYI 417
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 81/174 (46%), Gaps = 11/174 (6%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
+L + +LG ++V Y LI SFCK DD ++++ S V
Sbjct: 113 LLGEMRRLGFSPNKVV--YNTLISSFCKEGKT---DDAEKLVDEMRKDGLSPDV--VTFN 165
Query: 194 SMISGLCEMGQPHEAENLIEEMRVK---GL-EPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+ IS LC G+ EA + +M++ GL +P+ Y ++ G+ + G+LE+ + +
Sbjct: 166 ARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEK 225
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M+ ++ N+ L +L L L++M D G+ +V +YN V++
Sbjct: 226 MKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDG 279
>gi|222423065|dbj|BAH19514.1| AT3G04130 [Arabidopsis thaliana]
Length = 508
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLC 200
G R V+ Y +I +C+ F Y L+++ N S + +++S L
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFE---FIKVYEMLSEMEANGSPPNSI---TYTTIMSSLN 305
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMESDGTRVDT 259
+ EA + M+ G +P Y C+I+ R G LE+ ER+ +M G ++T
Sbjct: 306 AQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINT 365
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI--PFSVRTYNSVLNSC 304
N +++ Y H+E + + L++M+ S + P V TY +L SC
Sbjct: 366 STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNP-DVHTYQPLLRSC 411
Score = 45.4 bits (106), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
VA+I+ G+ EEA I + L + G + + L+D+ CK ++ +
Sbjct: 158 VAKIMRRFAGAGEWEEA-VGIFDRLGEFGLEKNTESMNL--LLDTLCK---EKRVEQARV 211
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L QL S + I G C+ + EA I+EM+ G P Y II
Sbjct: 212 VLLQL---KSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC 268
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + + ++++ME++G+ +++ ++SS E + +MK SG
Sbjct: 269 YCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPD 328
Query: 294 VRTYNSVLNS 303
YN ++++
Sbjct: 329 SLFYNCLIHT 338
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 16/237 (6%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P + N L H L R+S A L+ ++ E + + N ++ L ++G+
Sbjct: 147 PDVVTFNTLLHGLC---VEDRVSE-ALNLFHQMFETTC-RPNVVTFTTLMNGLCREGRIV 201
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL--VNSSSSVY 186
EA L L+ + + G + ++ Y ++D CK DT + LN L + S +
Sbjct: 202 EAVAL-LDRMMEDGLQPTQIT--YGTIVDGMCKKG------DTVSALNLLRKMEEVSHII 252
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++I LC+ G+ +A+NL EM+ KG+ P F Y +I G+ G D E++
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M D V N +++++ + +M GI + TY+S+++
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDG 369
Score = 52.4 bits (124), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 24/258 (9%)
Query: 53 DSKAASRLISKFVASS---PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109
D+ +A L+ K S P + +A+ L D H +L + + F +
Sbjct: 234 DTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTY 293
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +V G+ +AE L+ E L + S + V+ Y LI++F K +++
Sbjct: 294 NSMIVG-----FCSSGRWSDAEQLLQEMLERKISPD---VVTYNALINAFVKEGKFFEAE 345
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+D+ R + SMI G C+ + AE++ M KG P+
Sbjct: 346 ELYDEMLPR---------GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLI 396
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
+ +I GY ++D ++++M G DT N ++ + +L+ + LQ+M
Sbjct: 397 TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEM 456
Query: 286 KDSGIPFSVRTYNSVLNS 303
SG+ + T +++L+
Sbjct: 457 ISSGLCPDIVTCDTLLDG 474
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 14/173 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV---LFYCNLIDSFCKHDSKRGFDDTYA 173
+I+ L +G+ EAE L E R +V + Y ++ID CK D+
Sbjct: 517 LISGLINEGKFLEAEELYEEM------PHRGIVPDTITYSSMIDGLCKQSR---LDEATQ 567
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S S V ++I+G C+ G+ + L EM +G+ + Y +I G
Sbjct: 568 MFDSMGSKSFSPNV--VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICG 625
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ ++G + I +M S G DT+ +L+ EL R V L+K++
Sbjct: 626 FRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678
Score = 45.4 bits (106), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 20/200 (10%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A I AF+ K+G+ EAE L E L + G + Y ++ID FCK + + +
Sbjct: 330 ALINAFV-KEGKFFEAEELYDEMLPR-GIIPNTIT--YSSMIDGFCKQNRLDAAEHMFYL 385
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ S + + ++I G C + + L+ EM GL Y +I+G+
Sbjct: 386 MATKGCSPNLI-----TFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS---RMVLWLQKMK---DS 288
+G L ++ +M S G D V + +L D+ +L M +QK K D+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500
Query: 289 GIPFS-----VRTYNSVLNS 303
PF+ V+TYN +++
Sbjct: 501 SHPFNGVEPDVQTYNILISG 520
Score = 38.5 bits (88), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 44/97 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
SMI GLC+ + EA + + M K P+ + +I GY + G ++D + +M
Sbjct: 551 SMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRR 610
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
G + + ++ + ++ + Q+M SG+
Sbjct: 611 GIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647
Score = 38.1 bits (87), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +ISGL G+ EAE L EEM +G+ P Y +I G + L++ ++ +
Sbjct: 512 QTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDS 571
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
M S + V +++ Y + + +M GI + TY +++
Sbjct: 572 MGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLI 623
>gi|15240649|ref|NP_199839.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170477|sp|Q9FGR7.1|PP426_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g50280, chloroplastic; AltName: Full=Protein EMBRYO
DEFECTIVE 1006; Flags: Precursor
gi|9759030|dbj|BAB09399.1| unnamed protein product [Arabidopsis thaliana]
gi|332008538|gb|AED95921.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 723
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILET-LSKLGSRERELVLFYCNLIDSFCKH 162
E +W+ + ++ +G +EEA L+++T + K G R +V Y L+D++ K
Sbjct: 337 EKGVKWSQDVFGGLVKSFCDEGLKEEA--LVIQTEMEKKGIRSNTIV--YNTLMDAYNKS 392
Query: 163 DSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
+ + + + ++ + S++ Y ++ QP E L+ EM GLE
Sbjct: 393 NHIEEVEGLFTEMRDKGLKPSAATY------NILMDAYARRMQPDIVETLLREMEDLGLE 446
Query: 222 PSGFEYKCIIYGYGRLGLLEDMER-IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y C+I YGR + DM +M+ G + + ++ +Y +
Sbjct: 447 PNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYA 506
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
++M GI SV TY SVL++
Sbjct: 507 SFEEMCKEGIKPSVETYTSVLDA 529
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 10/193 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A +I L K G+ + I E +S+ G + + V + L+ SFC K
Sbjct: 312 AILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDV--FGGLVKSFCDEGLKEEALVIQTE 369
Query: 175 LNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S++ VY +++ + E E L EMR KGL+PS Y ++
Sbjct: 370 MEKKGIRSNTIVY------NTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDA 423
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL-WLQKMKDSGIPF 292
Y R + +E ++ +ME G + ++S+YG ++S M +MK G+
Sbjct: 424 YARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKP 483
Query: 293 SVRTYNSVLNSCS 305
S +Y +++++ S
Sbjct: 484 SSHSYTALIHAYS 496
Score = 45.4 bits (106), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 184 SVYVKRQALKSMISGLCEMGQ-PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+VY +I+ L + G+ E + E+M KG++ S + ++ + GL E+
Sbjct: 303 NVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEE 362
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
I +ME G R +T+ N ++ +Y N + + +M+D G+ S TYN +++
Sbjct: 363 ALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMD 422
Query: 303 SCSTIM 308
+ + M
Sbjct: 423 AYARRM 428
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S V + ++ C+ G EA + EM KG+ + Y ++ Y + +
Sbjct: 336 SEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHI 395
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E++E + +M G + N+++ +Y + + L++M+D G+ +V++Y +
Sbjct: 396 EEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCL 455
Query: 301 LNSCSTIMSMLQDLNSNDF 319
+++ M D+ ++ F
Sbjct: 456 ISAYGRTKKM-SDMAADAF 473
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 51/112 (45%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +++ G + G EA +++ E GL+PS Y ++ Y R G + +++
Sbjct: 555 RITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLK 614
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+M + + D++ + ++ ++ + R + + M SG R+Y +
Sbjct: 615 EMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKL 666
>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 546
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G C+ EA NL +EM K + P Y +I G + G + + ++++M G
Sbjct: 345 LINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRG 404
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-C-----STIM 308
+ + N ++ + L R + KMKD GI T+ +L+ C
Sbjct: 405 IPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQ 464
Query: 309 SMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELEDSSVLDEAMKWD 354
QDL + + L + + ++N EE ++++ ++E++ + A+ +D
Sbjct: 465 EAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFD 518
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I GLC+ G A L +M+ +G+ P F + ++ G + G L+D + + +
Sbjct: 414 SLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTK 473
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D N++++ + L + L KM+++G + T++ ++N+
Sbjct: 474 GYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAVTFDIIINA 523
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 144 REREL---VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200
R+R + V+ Y +LID CK+ D A N++ + ++ GLC
Sbjct: 401 RDRGIPANVITYNSLIDGLCKNGH---LDRAIALFNKM--KDQGIRPCSFTFTILLDGLC 455
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV 260
+ G+ +A+ +++ KG ++Y +I G+ + GLLE+ ++++ME +G + V
Sbjct: 456 KGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNAV 515
Query: 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
++++++ +E + L++M G+
Sbjct: 516 TFDIIINALFKKDENDKAEKLLRQMICRGL 545
>gi|255686008|gb|ACU28493.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 145
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 12 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 71
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 72 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKT 125
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 43 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDV 102
Query: 250 MESDGTRVDTVCSNMVLSS 268
M +G D N +L+
Sbjct: 103 MMDNGVDPDVYTYNSLLNG 121
>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
Length = 975
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 10/197 (5%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKR 166
Q N ++ + K GQ L +E L K+ R +L + Y +ID CKH S
Sbjct: 323 QPNAVTYGPVLNVMCKSGQ----TALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGS-- 376
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ + N++ + +I G C G+ + L+ +M + + P+
Sbjct: 377 -LDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVT 433
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
+ +I + + G L + E + +M G DT+ ++ + N L + + M
Sbjct: 434 FSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMV 493
Query: 287 DSGIPFSVRTYNSVLNS 303
G ++RT+N ++N
Sbjct: 494 SKGCDPNIRTFNILING 510
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ + LIDSF K R ++ + + ++ + + Y S+I G C+ +
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT------SLIDGFCKENHLDK 484
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +++ M KG +P+ + +I GY + ++D + +M G DTV N ++
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +L+ Q+M +P ++ TY +L+
Sbjct: 545 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 580
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 90/226 (39%), Gaps = 35/226 (15%)
Query: 110 NPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS--- 164
NP +V + +I K+G+ EAE L E + + + + + Y +LID FCK +
Sbjct: 428 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD---TITYTSLIDGFCKENHLDK 484
Query: 165 ---------KRGFDDTYARLNQLVN------------------SSSSVYVKRQALKSMIS 197
+G D N L+N S V ++I
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G CE+G+ + A+ L +EM + + P+ YK ++ G G E I ++E +
Sbjct: 545 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 604
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D N+++ + +++ + G+ V+TYN ++
Sbjct: 605 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 650
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G+C + +A +L + +KG++P Y +I G + G L + E + +ME DG
Sbjct: 612 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 671
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
D N+++ ++ + ++ V ++++K G T V++ ML D
Sbjct: 672 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID-------MLSDD 724
Query: 315 NSNDF 319
+N F
Sbjct: 725 KANYF 729
>gi|168055632|ref|XP_001779828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668740|gb|EDQ55341.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 730
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
+MIS + G +A + +R GLEP Y C++ YGR G+ E + +
Sbjct: 541 FNAMISMYGKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECM 600
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ G D V N V+ SY H +LS +M +GI TYN+ +
Sbjct: 601 AAGQTPDLVSYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVG 651
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++S G + A + + M KG+EP F Y ++ Y R G +E I NQM +
Sbjct: 264 LLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAYSRAGKVEQAMEIYNQMRTSN 323
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ N ++ +G + S M++ + M+ G+ + T+NS+L +
Sbjct: 324 CTPNSFTFNALIGMHGKNKNFSEMMVIFEDMQACGVEPDIVTWNSLLGA 372
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 20/170 (11%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EEM+ +G++P + Y I L E+ + QM+S D V N +L YG
Sbjct: 175 LFEEMKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLDVYG 234
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDFPLSIL 324
+ L++M+ +G ++ TYN +L++ C+ M + S +
Sbjct: 235 KAGWYNEAANVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVF 294
Query: 325 ELTEVLN--------EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMH 366
T +L+ E+ + + ++ S+ + +++ L GMH
Sbjct: 295 TYTSLLSAYSRAGKVEQAMEIYNQMRTSNCTPNSFTFNA------LIGMH 338
Score = 45.4 bits (106), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 6/121 (4%)
Query: 186 YVKRQALKSMISG-LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
Y A+ + SG LCE EA L +M+ P Y ++ YG+ G +
Sbjct: 189 YTYNTAITACASGSLCE-----EATELFTQMKSSNCTPDRVTYNALLDVYGKAGWYNEAA 243
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
++ +MES G + V N +LS++G + M GI V TY S+L++
Sbjct: 244 NVLKEMESAGCLPNIVTYNELLSAFGRAGLCNAAAEMKDSMVSKGIEPDVFTYTSLLSAY 303
Query: 305 S 305
S
Sbjct: 304 S 304
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A L ++G+ E AE LIL+ L++ + ++ Y +++ ++ +L
Sbjct: 439 LLAALAREGRWEHAE-LILDELNRSSYKPNDIA--YASMLHAYANGGELE-------KLK 488
Query: 177 QLVNSSSSVYV--KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
++V++ ++YV + LK+ + + EAE+ MR G + +I Y
Sbjct: 489 EMVDTLHTIYVPFTKILLKTFVLVYSKCSLVDEAEDAFLAMRHHGYLSDTSTFNAMISMY 548
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
G+ G+++ + S G D V N ++ YG + L++ +G +
Sbjct: 549 GKKGMMDKATDTFALLRSTGLEPDVVTYNCLMGMYGREGMYRKCEATLRECMAAGQTPDL 608
Query: 295 RTYNSVLNSCS 305
+YN+V+ S S
Sbjct: 609 VSYNTVIFSYS 619
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMERIVNQ 249
A S+IS L + EA E+M+ G +PS Y II YG+ G E++ + +
Sbjct: 119 AYTSLISALSRNRKFKEALGFFEQMKEAGPQPSLVTYNVIIDLYGKKGRSWENILELFEE 178
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M++ G + D N +++ + +MK S TYN++L+
Sbjct: 179 MKAQGIQPDEYTYNTAITACASGSLCEEATELFTQMKSSNCTPDRVTYNALLD 231
Score = 38.9 bits (89), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ ++I + GQ A + EM G++P F Y + Y G+ + +V M
Sbjct: 610 SYNTVIFSYSKHGQLSSATRIFHEMVSNGIQPDSFTYNTFVGCYVNGGMFPEALSVVKHM 669
Query: 251 ESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
G + D V ++ +Y G E+ R+ L+ +K S FS Y +
Sbjct: 670 HKTGCKPDEVTYRTLVDAYCKIGKFEEVERI---LKFIKSSDPNFSKAAYRRI 719
>gi|168024876|ref|XP_001764961.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683770|gb|EDQ70177.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 743
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 82/181 (45%), Gaps = 9/181 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I K G E A L+ + GS ++ + + L+ ++ K K+ F + A L
Sbjct: 542 MIDLYGKAGMPERAHK-ALKLAQQFGSADK---ISFSTLVHAYAK---KQDFPNMEAALW 594
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ N+ + +A S++ + GQ + +++ M G+ Y +I YG+
Sbjct: 595 EMQNAGYGSSL--EAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINTYGK 652
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
++ +ME + M+ +G D N ++ +YG + R V W + M+D+GI T
Sbjct: 653 NYMIAEMETLFRTMQEEGVVPDRWTYNTIIRTYGFADYPDRAVYWFKAMQDAGISPDRVT 712
Query: 297 Y 297
Y
Sbjct: 713 Y 713
Score = 52.8 bits (125), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 18/153 (11%)
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E + EM+ G S Y I+ YG+ G +E + ++ +ME+ G R+D N+++++
Sbjct: 590 EAALWEMQNAGYGSSLEAYNSILDAYGKAGQMEKVSDVLARMENSGMRMDLASYNILINT 649
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
YG + ++ M + M++ G+ TYN+++ + D+P + +
Sbjct: 650 YGKNYMIAEMETLFRTMQEEGVVPDRWTYNTIIRT----------YGFADYPDRAVYWFK 699
Query: 329 VLNEEEVS--------VVKELEDSSVLDEAMKW 353
+ + +S +V E + +DEA +W
Sbjct: 700 AMQDAGISPDRVTYMILVSTFERAGNIDEAARW 732
Score = 44.3 bits (103), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+ ++NS V A MI+ G ++E ++ EMR + P + + Y
Sbjct: 105 FSHMLNSGVQAVV---AYSVMIALYNREGLFEKSEQIVTEMRRNNVTPDRDNWLKQLNTY 161
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFS 293
G+ G +E+ ERI++ +E G + V N ++++YG + ++KM++ +P S
Sbjct: 162 GQQGKIEEAERIMDTVEESGMSLGLVGYNSMITAYGKACLYDKAARLVEKMREEDLVPDS 221
Query: 294 VRTYNSVLNSCSTIMSMLQDLN 315
+ TY+ ++ +C + + + L+
Sbjct: 222 I-TYSCMIGACGRVGKLKEALS 242
Score = 38.1 bits (87), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E L +EM G P + +I YG+ G+ E + + + G+ D + + ++
Sbjct: 519 EMHKLFQEMIDVGYVPYNITFNVMIDLYGKAGMPERAHKALKLAQQFGS-ADKISFSTLV 577
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+Y + M L +M+++G S+ YNS+L++
Sbjct: 578 HAYAKKQDFPNMEAALWEMQNAGYGSSLEAYNSILDA 614
>gi|449466949|ref|XP_004151188.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLS--KLGSRERELVLFYCNLIDSFCKHDSKRG 167
+P + ++I +QG E+A I+E + K+G + +C +++ + ++RG
Sbjct: 329 DPAMFLKLILMYVQQGSLEKALE-IVEVMKDFKIGVSD----CIFCAIVNGYA---TRRG 380
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
++ +L+ + S I+ C +G +AE++ EM KG + Y
Sbjct: 381 YEAAVKVYEKLIEDGCEP--GQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAY 438
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I YG+ G L+D R++ +M+ G + + N+++ +G L ++ ++MK
Sbjct: 439 SSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKR 498
Query: 288 SGIPFSVRTYNSVLNS 303
I +Y S++++
Sbjct: 499 KKIAPDKVSYTSIISA 514
Score = 42.4 bits (98), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 40/209 (19%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HDSKRGFDDTYARLN 176
EA + E L + G ++ Y + I+++C+ ++GFD +
Sbjct: 382 EAAVKVYEKLIEDGCEPGQVT--YASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYS 439
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMG----QPH------------------EAENLIEE 214
L+ S+Y K LK + L +M QP+ + E L +E
Sbjct: 440 SLI----SMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKE 495
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ K + P Y II Y + E E+ + +G +D +++ + +
Sbjct: 496 MKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSR 555
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +V L+ MK G R Y + LN+
Sbjct: 556 VDELVKLLRDMKLEGTRLDERLYRTALNA 584
>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g32630-like [Vitis vinifera]
Length = 625
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 28/189 (14%)
Query: 114 VAEIIAFLDKQGQREEA--ETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171
VAEI+ ++K+G TL++ S +G E LF + ++G +
Sbjct: 279 VAEILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLF---------EEMREKGIE-- 327
Query: 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ VYV S+IS C G A L +EM KGL PS Y +I
Sbjct: 328 -----------ADVYV----YTSIISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALI 372
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
+G + G +E + +VN+M+ G ++ V N ++ Y + + + M+ G+
Sbjct: 373 HGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLE 432
Query: 292 FSVRTYNSV 300
V YNS+
Sbjct: 433 SDVFAYNSI 441
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 83/181 (45%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K GQ E A+ L+ E K + V+F LID +C+ G D RL Q+V
Sbjct: 377 KAGQMEAAQMLVNEMQGK--GIDLNPVIFN-TLIDGYCE----SGMVDEALRL-QVVMEK 428
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+ A S+ SGLC++ + EA+ L+ M +G+ P+ + +I Y + G +
Sbjct: 429 KGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVE 488
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+R+ +ME G + + N+++ Y + ++++ G+ V T S+++
Sbjct: 489 AKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIH 548
Query: 303 S 303
Sbjct: 549 G 549
Score = 48.5 bits (114), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V V +L ++ GLC+ G L++E+ KG++ + Y I GY + L +
Sbjct: 221 VEVTVYSLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVA 280
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
I+ ME +G + V +++ + + ++ ++M++ GI V Y S++ SC
Sbjct: 281 EILTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSII-SC 339
Query: 305 S 305
+
Sbjct: 340 N 340
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I G CE G EA L M KGLE F Y I G +L ++ + ++ M
Sbjct: 403 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 462
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G +T+ ++ Y ++M++ G ++ TYN +++ S
Sbjct: 463 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 516
>gi|242075674|ref|XP_002447773.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
gi|241938956|gb|EES12101.1| hypothetical protein SORBIDRAFT_06g015370 [Sorghum bicolor]
Length = 380
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 10/169 (5%)
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
DS+R D+ + L+ ++ V+ + +++ G C+ G+ EAE L++ M G P
Sbjct: 161 DSQR-LDEAWGVLDSMLEEGICPTVR--SYTAILHGYCKQGRVLEAERLVDTMIQVGCAP 217
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
Y +I G R+G +ERI+ + E+ G + V N+ +S+ L +
Sbjct: 218 DVISYSVLIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQV 277
Query: 283 QKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
M G+ ++ T N +L C SM + +S+LE +E LN
Sbjct: 278 DVMLSRGVSMTIETVN-ILFDCLCRDSMFSE------AVSLLEYSEELN 319
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 55/259 (21%), Positives = 100/259 (38%), Gaps = 14/259 (5%)
Query: 40 QRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM 99
R L+S AVT + A S S + P + A + L+S + R + +
Sbjct: 14 DRRLTSFLSAVTSLADARSPPASPPAGAVPAALTPTAYNALMSAYSRAGRHDEV-----L 68
Query: 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159
R+ F L +I+ L G + A S LG ID+
Sbjct: 69 RLFRSLPFSPTAPLFTTLISSLAASGSKSAALDAFSLLASGLGPTTSAFTALL-KSIDAA 127
Query: 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219
R F T A + ++++ +I LC+ + EA +++ M +G
Sbjct: 128 PSESVYRAFFGTMAAMGCAPDAAT--------YNCLIWMLCDSQRLDEAWGVLDSMLEEG 179
Query: 220 LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279
+ P+ Y I++GY + G + + ER+V+ M G D + ++++ E ++
Sbjct: 180 ICPTVRSYTAILHGYCKQGRVLEAERLVDTMIQVGCAPDVISYSVLIQGLCRVGEFGKVE 239
Query: 280 LWLQKMKDSGIPFSVRTYN 298
L + + G + TYN
Sbjct: 240 RILGESEAKGWTPNAVTYN 258
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 9/125 (7%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC +G+ + E ++ E KG P+ Y + R+G L++ R V+ M S G
Sbjct: 225 LIQGLCRVGEFGKVERILGESEAKGWTPNAVTYNIYMSALCRMGFLDEAFRQVDVMLSRG 284
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
+ N++ + S V L+ ++ V YN T+MS L D
Sbjct: 285 VSMTIETVNILFDCLCRDSMFSEAVSLLEYSEELNWNVDVFCYN-------TLMSRLCD- 336
Query: 315 NSNDF 319
+ DF
Sbjct: 337 -AGDF 340
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 76/172 (44%), Gaps = 16/172 (9%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y L+D CKH + ++ +A ++ S+V +I LC+ G+ +
Sbjct: 307 IMTYGVLLDGLCKHGN---LEEAFALFQEM--QRSTVKPNLVIYTILIDSLCKCGKIKDG 361
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L + +GL+P+ + Y ++ + GL+ + ++ +ME DG D N+++
Sbjct: 362 KELFSRLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQG 421
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFP 320
+ H + S +++M + G T ++L D +ND P
Sbjct: 422 FLQHKDPSMARQLVEEMVNRGFSADAAT-----------RALLNDFPTNDIP 462
Score = 46.2 bits (108), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-FDDTYARL 175
II L K G+ EA L+ + K+G V+ Y LID +C RG D+ +
Sbjct: 173 IINSLSKSGKANEALGF-LKQMEKVGCVPN--VVNYSTLIDGYCL----RGQMDEARSVF 225
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ +V+ + V S+++G C++ + EA L++E KGL P + II G
Sbjct: 226 DLMVSKGCTPNV--YTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLC 283
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
R G +++ + + G + + ++L H L Q+M+ S + ++
Sbjct: 284 RAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLV 343
Query: 296 TYNSVLNS 303
Y +++S
Sbjct: 344 IYTILIDS 351
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC G+ + L ++M V+GL+P+ + Y II + G + + QME
Sbjct: 137 TLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKV 196
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G + V + ++ Y ++ M G +V TY S++N I
Sbjct: 197 GCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKI 250
>gi|357153691|ref|XP_003576535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30825,
chloroplastic-like [Brachypodium distachyon]
Length = 936
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Query: 190 QALKSMISGLCEMGQP-HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
+A+ + I C P E + +EM G S ++ YG+ GL +++ N
Sbjct: 689 EAMNNCIINCCGPAIPVDELTRIFDEMIQLGHMASTITLNVLLDIYGKAGLFNRAQKVFN 748
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D + N ++++Y + M ++QKM+D+G P S+ YN +LN+
Sbjct: 749 MARKQG-QADIISYNTIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAYNCMLNA 802
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 86/195 (44%), Gaps = 9/195 (4%)
Query: 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167
Q N V ++ K G EAE T +K+ + + Y +I + ++ G
Sbjct: 267 QPNVSTVGMLMGLYQKTGNLSEAEF----TFAKMRECNVKCINAYSAMITLY----TRSG 318
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
D + L+N V + ++ + G+ EA+ +++ M +G+ P+ +
Sbjct: 319 LFDKSEEVIVLMNDDK-VIANLENWLVQLNAYSQQGKMEEAKLILQSMVDEGVSPNVVAF 377
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I GYG++ ++ + + N +E G D ++ +G ++ +L+ +K+K+
Sbjct: 378 NTLITGYGKVSDMQKAKEVFNSLEKAGLAPDETTYRSMIEGFGRADKYDEALLYYRKLKE 437
Query: 288 SGIPFSVRTYNSVLN 302
SG + + +++N
Sbjct: 438 SGFQPNASNFYTMIN 452
Score = 44.7 bits (104), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 56/115 (48%)
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
V +A M++ + GQ E ++++MR + + Y ++ YGR G +E + +
Sbjct: 791 VSLEAYNCMLNAYGKAGQLEEFAAVLQKMRRAKCDFDHYTYNIMLNIYGRKGWIEGVAYV 850
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++++S G D N ++ +YG V +Q+M+ GI TY +++
Sbjct: 851 LSELKSRGVEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRLKGINADRITYTNLI 905
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/120 (21%), Positives = 55/120 (45%), Gaps = 1/120 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+ G +++M+ G S Y C++ YG+ G LE+ ++ +M
Sbjct: 763 TIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAYNCMLNAYGKAGQLEEFAAVLQKMRRA 822
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
D N++L+ YG + + L ++K G+ + +YN+++ + I M +D
Sbjct: 823 KCDFDHYTYNIMLNIYGRKGWIEGVAYVLSELKSRGVEPDLYSYNTLIKAYG-IAGMPED 881
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G + A+ + R +G + Y II Y G M V +M+ G V
Sbjct: 738 GLFNRAQKVFNMARKQG-QADIISYNTIIAAYAHSGDFRSMTYFVQKMQDAGFPVSLEAY 796
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
N +L++YG +L LQKM+ + F TYN +LN
Sbjct: 797 NCMLNAYGKAGQLEEFAAVLQKMRRAKCDFDHYTYNIMLN 836
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%)
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ E++ +G+EP + Y +I YG G+ ED +++ +M G D + ++++
Sbjct: 850 VLSELKSRGVEPDLYSYNTLIKAYGIAGMPEDAVKLMQEMRLKGINADRITYTNLIAALQ 909
Query: 271 DHNELSRMVLWLQKMKDSGI 290
+ V W MK +G+
Sbjct: 910 RNENFLEAVKWSLWMKQTGV 929
>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 527
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 92/200 (46%), Gaps = 18/200 (9%)
Query: 110 NPKLVAEIIAF--LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC----KHD 163
NP + I L K+G+ +EA+ L L ++K G + V+ Y L+D +C +
Sbjct: 217 NPNVYTYTILMDALCKEGKVKEAKNL-LAVMTKEGVKPN--VVSYNTLMDGYCLIGEVQN 273
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+K+ F + + + VN + Y MI LC+ + EA NL+ E+ K + P+
Sbjct: 274 AKQMF---HTMVQKGVNPNVYSY------NIMIDRLCKSKRVDEAMNLLREVLHKNMVPN 324
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I G+ +LG + ++ +M G D V +L + + L +
Sbjct: 325 TVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFM 384
Query: 284 KMKDSGIPFSVRTYNSVLNS 303
KMK+ GI + TY ++++
Sbjct: 385 KMKERGIQPNKYTYTALIDG 404
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 7/141 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +L+D+ CK+ + D A ++ + + ++I GLC+ G+ A
Sbjct: 360 VVTYTSLLDALCKN---QNLDKATALFMKM--KERGIQPNKYTYTALIDGLCKGGRHKNA 414
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+ L + + VKG + + Y +I G + G+L++ + ++ME +G D V +++ S
Sbjct: 415 QKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRS 474
Query: 269 Y--GDHNELSRMVLWLQKMKD 287
D N+ + +L KD
Sbjct: 475 LFEKDQNDKAEKLLHEMIAKD 495
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLV--NSSSSVYVKRQALKSMISGLCEMGQPH 206
V+ Y LI FC + + LN+++ N + +VY ++ LC+ G+
Sbjct: 185 VITYSTLIYGFCLAGQ---LMEAFGLLNEMILKNINPNVY----TYTILMDALCKEGKVK 237
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
EA+NL+ M +G++P+ Y ++ GY +G +++ +++ + M G + N+++
Sbjct: 238 EAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMI 297
Query: 267 SSYGDHNELSR-MVLWLQKMKDSGIPFSVRTYNSVLNS------CSTIMSMLQDLNSNDF 319
+ M L + + + +P +V TY+S+++ ++ + +L+++
Sbjct: 298 DRLCKSKRVDEAMNLLREVLHKNMVPNTV-TYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356
Query: 320 PLSILELTEVLN 331
P ++ T +L+
Sbjct: 357 PADVVTYTSLLD 368
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/158 (22%), Positives = 73/158 (46%), Gaps = 17/158 (10%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ-----ALKSMISGLCEMGQPH 206
Y +LID FCK R+ ++ +Y + Q S++ LC+
Sbjct: 328 YSSLIDGFCK----------LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLD 377
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A L +M+ +G++P+ + Y +I G + G ++ +++ + G R++ N+++
Sbjct: 378 KATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMI 437
Query: 267 SSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
S L + KM+++G IP +V T+ ++ S
Sbjct: 438 SGLCKEGMLDEALAMKSKMEENGCIPDAV-TFEIIIRS 474
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 53/110 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ +EA +L EM +G+ P+ Y +IYG+ G L + ++N+M
Sbjct: 155 TIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILK 214
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +++ + ++ L M G+ +V +YN++++
Sbjct: 215 NINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDG 264
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 36/154 (23%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE-------DM 243
A S+I GLC+ G+ EA L +EMR KGL F + II G+ R G ++ DM
Sbjct: 599 AYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDM 658
Query: 244 ER----------------------------IVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+R IVN+M S G D N + Y ++
Sbjct: 659 QRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKM 718
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS-CSTIM 308
++ V+ L ++ +GI TYN++L+ CS I+
Sbjct: 719 NQAVIILDQLISAGIVPDTVTYNTMLSGICSDIL 752
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G + + +A L EEMR G+ P + +++G+ + G +ED +R++ +
Sbjct: 357 TLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVS 416
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G +D+ ++++SS L + LQ++ + G+ SV +NS++ + S
Sbjct: 417 GLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYS 468
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S +++ M+S LC G+ EA L++E+ KGL S + +I Y R GL +
Sbjct: 416 SGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDK 475
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M G + N +L L + L +M + G P + Y +L+
Sbjct: 476 AFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLD 535
Query: 303 S 303
Sbjct: 536 G 536
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/237 (24%), Positives = 108/237 (45%), Gaps = 12/237 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ I+ L K G+ EA+ L+ E + K+G + Y LIDS K S + +A
Sbjct: 277 SSIVNGLCKDGRLSEAQELLRE-MKKMGVDPNHVA--YTTLIDSLFKAGSAW---EAFAC 330
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+QLV + + +++ GL + +P EAE++ + L P+ Y +I GY
Sbjct: 331 QSQLV--VRGMTLDLVMCTTLVDGLFKSSKPKEAEDMFRALSKLNLIPNSITYTALIDGY 388
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
++G +E +E ++ +ME + + + +++ Y L + ++KM D I +
Sbjct: 389 CKVGDMERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNA 448
Query: 295 RTYNSVLNS-CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEA 350
Y +++ C + N+ LS L++ VL + +V L+ +DEA
Sbjct: 449 YVYAILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFD---VLVNNLKRGKRMDEA 502
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 18/186 (9%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR-----LNQ 177
K G E E+L+ E K V+ Y ++I+ + +K+G D L+Q
Sbjct: 390 KVGDMERVESLLQEMEEK---HINPNVITYSSIINGY----TKKGILDEAINVMKKMLDQ 442
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
+ ++ VY +I G C+ G+ A +L EM++ GL+ + + ++ R
Sbjct: 443 NIIPNAYVYA------ILIDGYCKAGKQEIATDLYNEMKLSGLKVNNVLFDVLVNNLKRG 496
Query: 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+++ E ++ + S G +D V ++ + + S + +++M + IPF V TY
Sbjct: 497 KRMDEAEELLKDVTSRGLLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKSIPFDVVTY 556
Query: 298 NSVLNS 303
N ++N
Sbjct: 557 NVLING 562
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 58/119 (48%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V V ++I G C+ G ++A + M K ++ G+ R+GL + E
Sbjct: 73 VEVDTVTYNTVIWGFCQHGLVNQAFGFLSIMVKKDTCFDTITCNILVKGFCRIGLAKYGE 132
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
RI++ + S GT D + N ++ Y E+S + +++M+ G+ + +YN+++N
Sbjct: 133 RIMDNLVSGGTCKDVIGFNTLIDGYCKAGEMSLALDLVERMRKEGLLSDIVSYNTLING 191
Score = 45.8 bits (107), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 48/92 (52%)
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
E + L ++M+ GL P Y +I GYG++G ++ R+ +M + G T N+++
Sbjct: 780 ERDELFDKMKENGLNPDASTYDTLISGYGKIGNKKESIRLYCEMVAQGFVPKTSTYNVLI 839
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
S + ++ + L +M+ G+P S TY+
Sbjct: 840 SDFAKVGKMDQARELLNEMQVRGVPPSSSTYD 871
>gi|449530158|ref|XP_004172063.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13770,
chloroplastic-like [Cucumis sativus]
Length = 608
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 92/196 (46%), Gaps = 12/196 (6%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLS--KLGSRERELVLFYCNLIDSFCKHDSKRG 167
+P + ++I +QG E+A I+E + K+G + +C +++ + ++RG
Sbjct: 329 DPAMFLKLILMYVQQGSLEKALE-IVEVMKDFKIGVSD----CIFCAIVNGYA---TRRG 380
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
++ +L+ + S I+ C +G +AE++ EM KG + Y
Sbjct: 381 YEAAVKVYEKLIEDGCEP--GQVTYASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAY 438
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I YG+ G L+D R++ +M+ G + + N+++ +G L ++ ++MK
Sbjct: 439 SSLISMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKEMKR 498
Query: 288 SGIPFSVRTYNSVLNS 303
I +Y S++++
Sbjct: 499 KKIAPDKVSYTSIISA 514
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 40/209 (19%)
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HDSKRGFDDTYARLN 176
EA + E L + G ++ Y + I+++C+ ++GFD +
Sbjct: 382 EAAVKVYEKLIEDGCEPGQVT--YASAINAYCRVGLYSKAEDIFGEMEEKGFDKCVVAYS 439
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMG----QPH------------------EAENLIEE 214
L+ S+Y K LK + L +M QP+ + E L +E
Sbjct: 440 SLI----SMYGKTGRLKDAMRLLAKMKEKGCQPNVWIYNILMEMHGKAKNLKQVEKLWKE 495
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M+ K + P Y II Y + E E+ + +G +D +++ + +
Sbjct: 496 MKRKKIAPDKVSYTSIISAYVKASEFEKCEQYYREFRMNGGTIDKAFGGIMVGVFSKTSR 555
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +V L+ MK G R Y + LN+
Sbjct: 556 VDELVKLLRDMKLEGTRLDERLYRTALNA 584
>gi|255686068|gb|ACU28523.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686070|gb|ACU28524.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686072|gb|ACU28525.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686074|gb|ACU28526.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
gi|255686076|gb|ACU28527.1| At1g74580-like protein [Arabidopsis lyrata subsp. petraea]
Length = 149
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GL G EA L EM KGL P + ++ G ++G + D + +V M S
Sbjct: 12 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 71
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G D N+++ Y ++ + L M D+G+ V TYNS+LN C T
Sbjct: 72 GYFPDIFTFNILIHGYSTQLKIENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 125
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q +++GLC+MG +A+ L++ M KG P F + +I+GY +E+ I++
Sbjct: 43 QTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKIENALEILDV 102
Query: 250 MESDGTRVDTVCSNMVLSS 268
M +G D N +L+
Sbjct: 103 MLDNGVDPDVYTYNSLLNG 121
>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]
Length = 658
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/201 (20%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
EE + P + +I L K G+ E + + E ++K G + V Y LID++ K+
Sbjct: 322 EERGLEIPPHAYSLVIGGLCKDGRTVEGSS-VFENMNKKGCKAN--VAIYTALIDAYGKN 378
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
+ + + R+ V +++GLC+ G+ EA E + +
Sbjct: 379 GNVNEAINLFERMKGEGFEPDDV-----TYGVIVNGLCKSGRLDEAVEYFEFCKDNEVAV 433
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ E+ +M G D+ C N ++ + ++ ++
Sbjct: 434 NAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDALAKSGKMEEALVLF 493
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
++M+ G +V TY +++
Sbjct: 494 KRMEKEGCDQTVYTYTILISG 514
>gi|413949009|gb|AFW81658.1| hypothetical protein ZEAMMB73_233967 [Zea mays]
Length = 637
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 52/108 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI GL + HEA + E M+ KG P+ + Y +I + + G ++ +M+
Sbjct: 369 TMIEGLLRGQRQHEAVKMFELMKAKGPPPNVWTYTMLICNHCKRGKMDMAMECFEEMQEA 428
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ D +L YG+ + R+ L++M G P RTYN+++
Sbjct: 429 RCQPDVATYTCLLVGYGNAKRMDRVTAVLEEMTQKGCPPDARTYNALI 476
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/195 (24%), Positives = 87/195 (44%), Gaps = 9/195 (4%)
Query: 111 PKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L+ + +I L G+ +EA L E +SK + L Y LI+ FC H K
Sbjct: 277 PNLITYSTLINGLCGSGRLKEAIELFEEMVSK--DQILPDALTYNALINGFC-HGXKVDR 333
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
+ + +V+ ++++G C+ G+ EA+ + +EM+ GL+P Y
Sbjct: 334 ALKIMEFMKKNGCNPNVF----NYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYT 389
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+I + R G +++ ++ M + R DTV N++L L+++
Sbjct: 390 TLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLERLPYE 449
Query: 289 GIPFSVRTYNSVLNS 303
G+ + +Y VLNS
Sbjct: 450 GVYLNKASYRIVLNS 464
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 68/176 (38%), Gaps = 36/176 (20%)
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----- 218
+K G D+ + + + S Y ++I+GLC G+ EA L EEM K
Sbjct: 254 AKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILP 313
Query: 219 -------------------------------GLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
G P+ F Y ++ G+ + G LE+ + +
Sbjct: 314 DALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVF 373
Query: 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++M+S G + DTV +++ + + + L+ M ++ T+N +L
Sbjct: 374 DEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGG 429
>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
pusilla]
Length = 431
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 86/178 (48%), Gaps = 13/178 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVL 150
LA +Y R+ +S P L+ +I L K+G ++A LI E + K G + ++
Sbjct: 265 LAMEIYKRMLSQSLL---PDLITYNTLIYGLCKKGDLKQANDLIDEMVMK-GLKPDKIT- 319
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y LID CK D + +++ + + + A ++ISGLC+ G+ +AE
Sbjct: 320 -YTTLIDGCCKEGD---LDTAFEHRKRMIQEN--IRLDDVAYTALISGLCQEGRSVDAEK 373
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM GL+P Y II + + G + R++ +M+ +G V N++++
Sbjct: 374 MLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
+ LID CK + Y R+ S S+ ++I GLC+ G +A +L
Sbjct: 250 FTTLIDGHCKKGRVDLAMEIYKRM-----LSQSLLPDLITYNTLIYGLCKKGDLKQANDL 304
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLE------------------------------ 241
I+EM +KGL+P Y +I G + G L+
Sbjct: 305 IDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQ 364
Query: 242 -----DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
D E+++ +M S G + DT M+++ + ++ + L++M+ +G SV T
Sbjct: 365 EGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVT 424
Query: 297 YNSVLNS 303
YN ++N
Sbjct: 425 YNVLMNG 431
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNS 181
K G A++ + + ++K G R V+ Y L++ + + D GF A L V
Sbjct: 154 KDGDIRVAQS-VFDAITKWGLRPS--VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQP 210
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
Y +I+GLC+ + +A L +EM VKGL P+G + +I G+ + G ++
Sbjct: 211 DXYTY------SVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVD 264
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
I +M S D + N ++ +L + + +M G+ TY +++
Sbjct: 265 LAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLI 324
Query: 302 NSC 304
+ C
Sbjct: 325 DGC 327
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,086,689,619
Number of Sequences: 23463169
Number of extensions: 235226498
Number of successful extensions: 724911
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3746
Number of HSP's successfully gapped in prelim test: 972
Number of HSP's that attempted gapping in prelim test: 693646
Number of HSP's gapped (non-prelim): 25657
length of query: 425
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 280
effective length of database: 8,957,035,862
effective search space: 2507970041360
effective search space used: 2507970041360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 78 (34.7 bits)