BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042756
(425 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GWA9|PP157_ARATH Pentatricopeptide repeat-containing protein At2g17033
OS=Arabidopsis thaliana GN=At2g17033 PE=2 SV=1
Length = 505
Score = 478 bits (1229), Expect = e-134, Method: Compositional matrix adjust.
Identities = 236/392 (60%), Positives = 298/392 (76%), Gaps = 3/392 (0%)
Query: 35 LTKQGQRFLSSLA-LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL 93
L K G RFLSSL+ A+ D A +R I KFVA+SP+ +ALN LSHLLS T+HP LS
Sbjct: 89 LMKHGDRFLSSLSSPALAGDPSAINRHIKKFVAASPKSVALNVLSHLLSDQTSHPHLSFF 148
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A LY ITE SWF WNPKL+AE+IA L+KQ + +E+ETL+ +S+L S ER+ LF C
Sbjct: 149 ALSLYSEITEASWFDWNPKLIAELIALLNKQERFDESETLLSTAVSRLKSNERDFTLFLC 208
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
NL++S K S +GF + RL +++ SSSVYVK QA KSM+SGLC M QPH+AE +IE
Sbjct: 209 NLVESNSKQGSIQGFSEASFRLREIIQRSSSVYVKTQAYKSMVSGLCNMDQPHDAERVIE 268
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
EMR++ ++P FEYK ++YGYGRLGL +DM R+V++M ++G ++DTVCSNMVLSSYG H+
Sbjct: 269 EMRMEKIKPGLFEYKSVLYGYGRLGLFDDMNRVVHRMGTEGHKIDTVCSNMVLSSYGAHD 328
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEE 333
L +M WLQK+K +PFS+RTYNSVLNSC TI+SML+DL+S P+S+ EL LNE+
Sbjct: 329 ALPQMGSWLQKLKGFNVPFSIRTYNSVLNSCPTIISMLKDLDS--CPVSLSELRTFLNED 386
Query: 334 EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIP 393
E +V EL SSVLDEA++W++ E KLDLHGMHL S+Y I+LQWMDE R RF+ EK VIP
Sbjct: 387 EALLVHELTQSSVLDEAIEWNAVEGKLDLHGMHLSSSYLILLQWMDETRLRFSEEKCVIP 446
Query: 394 AEITVVCGSGKHSTVRGESSVKAMVKKMMVRT 425
AEI VV GSGKHS VRGES VKA+VKK+MVRT
Sbjct: 447 AEIVVVSGSGKHSNVRGESPVKALVKKIMVRT 478
>sp|Q9LKU8|PP401_ARATH Pentatricopeptide repeat-containing protein At5g28460
OS=Arabidopsis thaliana GN=At5g28460 PE=2 SV=1
Length = 766
Score = 72.0 bits (175), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 82/158 (51%), Gaps = 8/158 (5%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LI++ CK R D+ Q+ + + + ++I GLC++G+ EAE
Sbjct: 335 LINTLCK---SRRVDEALEVFEQMRGKRTDDGNVIKADSIHFNTLIDGLCKVGRLKEAEE 391
Query: 211 LIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L+ M+++ P+ Y C+I GY R G LE + +V++M+ D + + V N ++
Sbjct: 392 LLVRMKLEERCVPNAVTYNCLIDGYCRAGKLETAKEVVSRMKEDEIKPNVVTVNTIVGGM 451
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 452 CRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I C + +A E+M G P Y +I G ++ D R+V +++
Sbjct: 481 TLIHACCSVSNVEKAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEG 540
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G +D + NM++ + D N ++ L M+ G TYN++++
Sbjct: 541 GFSLDLLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNAEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>sp|Q9FMQ1|PP376_ARATH Pentatricopeptide repeat-containing protein At5g12100,
mitochondrial OS=Arabidopsis thaliana GN=At5g12100 PE=2
SV=1
Length = 816
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 97/203 (47%), Gaps = 8/203 (3%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD 163
+S + N + ++ L K+G+ E+AE ++ ++K G E++ Y +ID +C+
Sbjct: 347 DSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAK-GLVPNEVI--YNTMIDGYCRKG 403
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
G AR+ + A +I CE+G+ AE + +M++KG+ PS
Sbjct: 404 DLVG-----ARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPS 458
Query: 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283
Y +I GYGR + I+ +ME +GT + V +++ ++L + +
Sbjct: 459 VETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKR 518
Query: 284 KMKDSGIPFSVRTYNSVLNSCST 306
M+D G+ VR YN +++ C +
Sbjct: 519 DMEDRGVSPKVRIYNMLIDGCCS 541
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDDTYAR--LNQLVNSSSSVYVKRQALKSMISGLCEM 202
V Y LID CK +D+++ FD+ AR L L+ ++ +I G C+
Sbjct: 214 VFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNT-----------LIDGYCKA 262
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G P ++ + E M+ +EPS + ++ G + G++ED E ++ +M+ G D
Sbjct: 263 GNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTF 322
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ Y + + + + DSG+ + T + +LN+
Sbjct: 323 SILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNA 363
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LI+ CK G A++ + V K + +I G C G+ +A
Sbjct: 494 VVSYGTLINCLCK-----GSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDA 548
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+EM KG+E + Y +I G G L + E ++ ++ G + D N ++S
Sbjct: 549 FRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISG 608
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
YG + R + ++MK SGI +++TY+ +++ C+
Sbjct: 609 YGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISLCT 645
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 36/184 (19%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y LID C SK +D + +++ + + ++I GL G+ EA
Sbjct: 529 VRIYNMLIDGCC---SKGKIEDAFRFSKEMLKKG--IELNLVTYNTLIDGLSMTGKLSEA 583
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-------LLEDMER------------IVNQ 249
E+L+ E+ KGL+P F Y +I GYG G L E+M+R +++
Sbjct: 584 EDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPTLKTYHLLISL 643
Query: 250 MESDGTRV------------DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
+G + D + N VL Y H ++ + ++M + I TY
Sbjct: 644 CTKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKAFNLQKQMIEKSIGLDKTTY 703
Query: 298 NSVL 301
NS++
Sbjct: 704 NSLI 707
>sp|Q9M316|PP292_ARATH Pentatricopeptide repeat-containing protein At3g61520,
mitochondrial OS=Arabidopsis thaliana GN=At3g61520 PE=2
SV=1
Length = 766
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 68/117 (58%), Gaps = 1/117 (0%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I GLC++G+ EAE L+ M+++ P+ Y C+I GY R G LE + +V++M
Sbjct: 373 FNTLIDGLCKVGRLKEAEELLVRMKLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRM 432
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ D + + V N ++ H+ L+ V++ M+ G+ +V TY +++++C ++
Sbjct: 433 KEDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSV 489
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ISGLC++ + H+A ++E+++ G Y +I + E + ++ ME +
Sbjct: 516 ALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLIGLFCDKNNTEKVYEMLTDMEKE 575
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
G + D++ N ++S +G H + + +++M++ G+ +V TY +V+++ CS
Sbjct: 576 GKKPDSITYNTLISFFGKHKDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSV 629
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 7/129 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +I C+ + ++ +M +G +P Y +I +G+ E +ER++ QM
Sbjct: 548 AYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLISFFGKHKDFESVERMMEQM 607
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306
DG V+ +Y EL L+ KD G+ V YN ++N+ S
Sbjct: 608 REDGLDPTVTTYGAVIDAYCSVGELDEA---LKLFKDMGLHSKVNPNTVIYNILINAFSK 664
Query: 307 IMSMLQDLN 315
+ + Q L+
Sbjct: 665 LGNFGQALS 673
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 32/216 (14%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ +EAE L++ KL R + Y LID +C+ + +R+
Sbjct: 376 LIDGLCKVGRLKEAEELLVRM--KLEERCAPNAVTYNCLIDGYCRAGKLETAKEVVSRMK 433
Query: 177 Q--------LVNSSSSVYVKRQALK----------------------SMISGLCEMGQPH 206
+ VN+ + L ++I C +
Sbjct: 434 EDEIKPNVVTVNTIVGGMCRHHGLNMAVVFFMDMEKEGVKGNVVTYMTLIHACCSVSNVE 493
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
+A E+M G P Y +I G ++ D R+V +++ G +D + NM++
Sbjct: 494 KAMYWYEKMLEAGCSPDAKIYYALISGLCQVRRDHDAIRVVEKLKEGGFSLDLLAYNMLI 553
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ D N ++ L M+ G TYN++++
Sbjct: 554 GLFCDKNNTEKVYEMLTDMEKEGKKPDSITYNTLIS 589
Score = 38.1 bits (87), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+L Y LI FC ++ + + + S+ ++IS +
Sbjct: 546 LLAYNMLIGLFCDKNNTEKVYEMLTDMEKEGKKPDSI-----TYNTLISFFGKHKDFESV 600
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLS 267
E ++E+MR GL+P+ Y +I Y +G L++ ++ M +TV N++++
Sbjct: 601 ERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVIYNILIN 660
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ + + ++MK + +V TYN++
Sbjct: 661 AFSKLGNFGQALSLKEEMKMKMVRPNVETYNALF 694
>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560,
mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2
SV=1
Length = 660
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 97/202 (48%), Gaps = 9/202 (4%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
+E Q P + +I L K+G+ E T + E + + GS+ V Y LID + K
Sbjct: 319 DEKGIQVPPHAFSLVIGGLCKEGKLNEGYT-VFENMIRKGSKPN--VAIYTVLIDGYAKS 375
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S +D L+++++ V ++ +++GLC+ G+ EA + R GL
Sbjct: 376 GS---VEDAIRLLHRMIDEGFKPDVVTYSV--VVNGLCKNGRVEEALDYFHTCRFDGLAI 430
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ Y +I G G+ G +++ ER+ +M G D+ C N ++ ++ H ++ +
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALF 490
Query: 283 QKM-KDSGIPFSVRTYNSVLNS 303
++M ++ G +V TY +L+
Sbjct: 491 KRMEEEEGCDQTVYTYTILLSG 512
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 88/182 (48%), Gaps = 10/182 (5%)
Query: 123 KQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181
K GQ ++A +E L + +R E + Y +I + C DS G + L Q ++
Sbjct: 269 KAGQTQKA----MEKLRDMETRGHEADKITYMTMIQA-CYADSDFG---SCVALYQEMDE 320
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+ V A +I GLC+ G+ +E + E M KG +P+ Y +I GY + G +E
Sbjct: 321 KG-IQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVE 379
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D R++++M +G + D V ++V++ + + + + + G+ + Y+S++
Sbjct: 380 DAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLI 439
Query: 302 NS 303
+
Sbjct: 440 DG 441
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC--NLIDSFCKHDSKRG 167
N + +I L K G+ +EAE L E K +R+ YC LID+F KH R
Sbjct: 431 NSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDS-----YCYNALIDAFTKH---RK 482
Query: 168 FDDTYA---RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ A R+ + +VY ++SG+ + + EA L + M KG+ P+
Sbjct: 483 VDEAIALFKRMEEEEGCDQTVYT----YTILLSGMFKEHRNEEALKLWDMMIDKGITPTA 538
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
++ + G G + +I++++ G +D C +M+
Sbjct: 539 ACFRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMI 579
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 52/114 (45%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A ++I ++G E + +M+ G+EP+ + Y ++ G ++ ER+ M
Sbjct: 189 AANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVM 248
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
ES + D V N ++ Y + + + L+ M+ G TY +++ +C
Sbjct: 249 ESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQAC 302
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL AE + E M ++P Y +I GY + G + + ME+ G
Sbjct: 228 LMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRG 287
Query: 255 TRVDTVCS-NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + M+ + Y D + S + L+ Q+M + GI ++ V+
Sbjct: 288 HEADKITYMTMIQACYADSDFGSCVALY-QEMDEKGIQVPPHAFSLVIGG 336
>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670,
mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2
SV=1
Length = 741
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 9/197 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
II+ + G EA L E K E + V F LI+ +CK + D + N
Sbjct: 392 IISGFCQIGDMVEAGKLFHEMFCK--GLEPDSVTF-TELINGYCKAGHMK---DAFRVHN 445
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++ + S V ++I GLC+ G A L+ EM GL+P+ F Y I+ G +
Sbjct: 446 HMIQAGCSPNV--VTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCK 503
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G +E+ ++V + E+ G DTV ++ +Y E+ + L++M G+ ++ T
Sbjct: 504 SGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVT 563
Query: 297 YNSVLNSCSTIMSMLQD 313
+N ++N + ML+D
Sbjct: 564 FNVLMNG-FCLHGMLED 579
Score = 69.3 bits (168), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
N + II L + + EAE E + + G +V Y LID FCK R
Sbjct: 315 NSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ-GILPDTVV--YTTLIDGFCKRGDIRAAS 371
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
+ ++ S + ++ISG C++G EA L EM KGLEP +
Sbjct: 372 KFFYEMH-----SRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 426
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
+I GY + G ++D R+ N M G + V ++ +L L +M G
Sbjct: 427 LINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIG 486
Query: 290 IPFSVRTYNSVLNS 303
+ ++ TYNS++N
Sbjct: 487 LQPNIFTYNSIVNG 500
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 109/243 (44%), Gaps = 23/243 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K+G + A L+ E + K+G + + Y ++++ CK + ++ +
Sbjct: 462 LIDGLCKEGDLDSANELLHE-MWKIGLQPN--IFTYNSIVNGLCKSGN---IEEAVKLVG 515
Query: 177 QL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
+ +N+ + Y +++ C+ G+ +A+ +++EM KGL+P+ + ++
Sbjct: 516 EFEAAGLNADTVTYT------TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ G+LED E+++N M + G + N ++ Y N L + M G+
Sbjct: 570 GFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGP 629
Query: 293 SVRTYNSVLNSCSTIMSM------LQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSV 346
+TY +++ +M Q++ F +S+ VL + + K LE V
Sbjct: 630 DGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSV-STYSVLIKGFLKRKKFLEAREV 688
Query: 347 LDE 349
D+
Sbjct: 689 FDQ 691
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 56/119 (47%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C G+ + LIE M+ KGL+P+ + Y II R+ L + E ++M
Sbjct: 286 TVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ 345
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
G DTV ++ + ++ + +M I V TY ++++ I M++
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVE 404
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I +C++G+ EA +L+ M +KG P Y ++ GY R G L+ + +++ M+ G
Sbjct: 252 VIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKG 311
Query: 255 TR 256
+
Sbjct: 312 LK 313
>sp|Q9FKC3|PP424_ARATH Pentatricopeptide repeat-containing protein At5g48730,
chloroplastic OS=Arabidopsis thaliana GN=At5g48730 PE=2
SV=2
Length = 508
Score = 69.3 bits (168), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 109/225 (48%), Gaps = 12/225 (5%)
Query: 84 DTTHPRLSSL----AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLS 139
++ H R+++L A ++ + E+ W++ N + ++I L K Q E+A L E ++
Sbjct: 119 ESLHERITALRWESAIQVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMIN 178
Query: 140 KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL 199
+ E+ Y L+ ++ + FD + L ++ SS + +I
Sbjct: 179 EGCVVNHEV---YTALVSAYSRSGR---FDAAFTLLERM-KSSHNCQPDVHTYSILIKSF 231
Query: 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVD 258
++ + ++L+ +MR +G+ P+ Y +I YG+ + +ME + QM D + D
Sbjct: 232 LQVFAFDKVQDLLSDMRRQGIRPNTITYNTLIDAYGKAKMFVEMESTLIQMLGEDDCKPD 291
Query: 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ N L ++G + ++ M +K + SGI ++RT+N +L+S
Sbjct: 292 SWTMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDS 336
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 6/117 (5%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
+ S + GQ EN E+ + G+EP+ + ++ YG+ G + M ++ M
Sbjct: 294 TMNSTLRAFGGNGQIEMMENCYEKFQSSGIEPNIRTFNILLDSYGKSGNYKKMSAVMEYM 353
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
+ V N+V+ ++G +L +M + M+ S R + S + CS +
Sbjct: 354 QKYHYSWTIVTYNVVIDAFGRAGDLKQMEYLFRLMQ------SERIFPSCVTLCSLV 404
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + E L M+ + + PS ++ YGR + + ++ +E+
Sbjct: 368 VIDAFGRAGDLKQMEYLFRLMQSERIFPSCVTLCSLVRAYGRASKADKIGGVLRFIENSD 427
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R+D V N ++ +YG + + M L+ M+ G TY +++ +
Sbjct: 428 IRLDLVFFNCLVDAYGRMEKFAEMKGVLELMEKKGFKPDKITYRTMVKA 476
>sp|Q9SCP4|PP279_ARATH Pentatricopeptide repeat-containing protein At3g53170
OS=Arabidopsis thaliana GN=At3g53170 PE=2 SV=1
Length = 447
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 101/211 (47%), Gaps = 8/211 (3%)
Query: 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYC 153
A ++ + ++ W++ K ++ L Q ++A +L+ E + L + + Y
Sbjct: 77 ALKIFNLLRKQHWYEPRCKTYTKLFKVLGNCKQPDQA-SLLFEVM--LSEGLKPTIDVYT 133
Query: 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
+LI + K + D ++ L + + S S +IS C++G+ ++++
Sbjct: 134 SLISVYGKSEL---LDKAFSTL-EYMKSVSDCKPDVFTFTVLISCCCKLGRFDLVKSIVL 189
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS-NMVLSSYGDH 272
EM G+ S Y II GYG+ G+ E+ME ++ M DG + VC+ N ++ SYG+
Sbjct: 190 EMSYLGVGCSTVTYNTIIDGYGKAGMFEEMESVLADMIEDGDSLPDVCTLNSIIGSYGNG 249
Query: 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +M W + + G+ + T+N ++ S
Sbjct: 250 RNMRKMESWYSRFQLMGVQPDITTFNILILS 280
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 86/183 (46%), Gaps = 7/183 (3%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ + ++++LE +S LG + Y +ID + K F++ + L ++
Sbjct: 177 KLGRFDLVKSIVLE-MSYLGVGCSTVT--YNTIIDGYGKAGM---FEEMESVLADMIEDG 230
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S+ L S+I + E+ ++ G++P + +I +G+ G+ +
Sbjct: 231 DSL-PDVCTLNSIIGSYGNGRNMRKMESWYSRFQLMGVQPDITTFNILILSFGKAGMYKK 289
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
M +++ ME + TV N+V+ ++G + +M +KMK G+ + TY S++N
Sbjct: 290 MCSVMDFMEKRFFSLTTVTYNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYCSLVN 349
Query: 303 SCS 305
+ S
Sbjct: 350 AYS 352
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLN-QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +I++F K DD + ++ Q V +S Y S+++ + G + ++
Sbjct: 309 YNIVIETFGKAGRIEKMDDVFRKMKYQGVKPNSITYC------SLVNAYSKAGLVVKIDS 362
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ ++ + + CII YG+ G L M+ + QME + D + ++ +Y
Sbjct: 363 VLRQIVNSDVVLDTPFFNCIINAYGQAGDLATMKELYIQMEERKCKPDKITFATMIKTYT 422
Query: 271 DHN 273
H
Sbjct: 423 AHG 425
>sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690
OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1
Length = 566
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 17/209 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLG--SRERELV 149
+F L + +TE F ++P +V +I K+G+ E+A+ L E + KLG + ER
Sbjct: 182 SFDLLIELTE---FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFE-MGKLGLVANERT-- 235
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
Y LI+ K+ K+ + Y ++ + V+ +++ LC+ G+ +A
Sbjct: 236 --YTVLINGLFKNGVKKQGFEMYEKMQE-----DGVFPNLYTYNCVMNQLCKDGRTKDAF 288
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
+ +EMR +G+ + Y +I G R L + ++V+QM+SDG + + N ++ +
Sbjct: 289 QVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGF 348
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+L + + + +K G+ S+ TYN
Sbjct: 349 CGVGKLGKALSLCRDLKSRGLSPSLVTYN 377
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 98/215 (45%), Gaps = 19/215 (8%)
Query: 94 AFPLYMRITEESWFQWNPKLVAE--IIAFLDKQGQREEAETLILETLSKLGSREREL--- 148
F +Y ++ E+ F P L ++ L K G+ ++A + E RER +
Sbjct: 252 GFEMYEKMQEDGVF---PNLYTYNCVMNQLCKDGRTKDAFQVFDEM------RERGVSCN 302
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LI C+ + ++ ++Q+ S + ++I G C +G+ +A
Sbjct: 303 IVTYNTLIGGLCR---EMKLNEANKVVDQM--KSDGINPNLITYNTLIDGFCGVGKLGKA 357
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
+L +++ +GL PS Y ++ G+ R G ++V +ME G + V +++ +
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + + + M++ G+ V TY+ +++
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHG 452
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++SG C G A +++EM +G++PS Y +I + R +E ++ ME G
Sbjct: 379 LVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELG 438
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRM 278
D ++++ + G NE SR+
Sbjct: 439 LVPDVHTYSVLIHGFCIKGQMNEASRL 465
>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320,
mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2
SV=1
Length = 730
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Query: 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH 206
E+V+F LI F H DD A L+ +V +S + S+I G + G
Sbjct: 352 EIVIFN-TLIHGFVTHGR---LDDAKAVLSDMV-TSYGIVPDVCTYNSLIYGYWKEGLVG 406
Query: 207 EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266
A ++ +MR KG +P+ + Y ++ G+ +LG +++ ++N+M +DG + +TV N ++
Sbjct: 407 LALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLI 466
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S++ + + V ++M G V T+NS+++
Sbjct: 467 SAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISG 503
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C++G+ EA N++ EM GL+P+ + C+I + + + + I +M G
Sbjct: 430 LVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKG 489
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ D N ++S + +E+ + L+ M G+ + TYN+++N+
Sbjct: 490 CKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 69/151 (45%), Gaps = 5/151 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI++F + + + +N++V S + S+I GLC G+ +A +L
Sbjct: 532 YNTLINAFLRRGEIK---EARKLVNEMVFQGSPL--DEITYNSLIKGLCRAGEVDKARSL 586
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E+M G PS +I G R G++E+ +M G+ D V N +++
Sbjct: 587 FEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCR 646
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + +K++ GIP T+N++++
Sbjct: 647 AGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 82/181 (45%), Gaps = 8/181 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
K G+ +EA +L +S G + V F C LI +FCK + + + +
Sbjct: 436 KLGKIDEAYN-VLNEMSADGLKPNT-VGFNC-LISAFCKEHRIPEAVEIFREMPR-KGCK 491
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
VY S+ISGLCE+ + A L+ +M +G+ + Y +I + R G +++
Sbjct: 492 PDVY----TFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKE 547
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++VN+M G+ +D + N ++ E+ + +KM G S + N ++N
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILIN 607
Query: 303 S 303
Sbjct: 608 G 608
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/286 (18%), Positives = 114/286 (39%), Gaps = 37/286 (12%)
Query: 31 LTARLTKQGQRFLSSLALAVTRDSKAA------SRLI---SKFVASSPQFIALNALSHLL 81
L ++ +G F SL +++ RD A +RL+ + P F + N + +L
Sbjct: 133 LLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLEIL 192
Query: 82 SPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL 141
H +++ + + R + F + + A ++ +L ++K
Sbjct: 193 VSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAV------NEIDSALSLLRDMTKH 246
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV-----KRQALKSMI 196
G ++ Y LI S K + R+N+ + +++ + +I
Sbjct: 247 GCVPNSVI--YQTLIHSLSKCN----------RVNEALQLLEEMFLMGCVPDAETFNDVI 294
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
GLC+ + +EA ++ M ++G P Y ++ G ++G ++ + + ++ +
Sbjct: 295 LGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI----PK 350
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS-GIPFSVRTYNSVL 301
+ V N ++ + H L L M S GI V TYNS++
Sbjct: 351 PEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLI 396
>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010
OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1
Length = 642
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 8/163 (4%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQ-LVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
YC+LI++ K ++ + L + N SS VY MI + G+ EA +
Sbjct: 447 YCSLINALGKAKRYEAANELFKELKENFGNVSSRVYA------VMIKHFGKCGKLSEAVD 500
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
L EM+ +G P + Y ++ G + G++ + ++ +ME +G R D N++L+ +
Sbjct: 501 LFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADINSHNIILNGFA 560
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
R + + +K SGI TYN++L C M ++
Sbjct: 561 RTGVPRRAIEMFETIKHSGIKPDGVTYNTLL-GCFAHAGMFEE 602
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ + +A L+EEM KG P Y +I G+ E + +++ +
Sbjct: 415 LIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENF 474
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
V + +++ +G +LS V +MK+ G V YN+++ S M+ +
Sbjct: 475 GNVSSRVYAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALM-SGMVKAGMINEA 533
Query: 315 NS 316
NS
Sbjct: 534 NS 535
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 17/192 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL- 175
+I L ++GQ E+ + E ++ + Y LI S+ K G +D+ RL
Sbjct: 203 VILMLMQEGQHEKVHEVYTEMCNEGDCFPDTIT--YSALISSY----EKLGRNDSAIRLF 256
Query: 176 ----NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
+ + + +Y +++ ++G+ +A +L EEM+ G P+ + Y +I
Sbjct: 257 DEMKDNCMQPTEKIYT------TLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTELI 310
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G G+ G +++ M DG D V N +++ G + + +M
Sbjct: 311 KGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRCT 370
Query: 292 FSVRTYNSVLNS 303
+V +YN+V+ +
Sbjct: 371 PTVVSYNTVIKA 382
>sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630
OS=Arabidopsis thaliana GN=At2g32630 PE=3 SV=1
Length = 624
Score = 62.4 bits (150), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 16/184 (8%)
Query: 123 KQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFC-KHDSKRGFDDTYARLNQL 178
K G+ +AE L E RER + V Y +LI C K + KR F +
Sbjct: 306 KNGKMSDAEKLFDEM------RERGIESDVHVYTSLISWNCRKGNMKRAFLLFDELTEKG 359
Query: 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
++ SS Y ++I G+C++G+ AE L+ EM+ KG+ + + +I GY R G
Sbjct: 360 LSPSSYTY------GALIDGVCKVGEMGAAEILMNEMQSKGVNITQVVFNTLIDGYCRKG 413
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
++++ I + ME G + D N + S + WL +M + G+ S +Y
Sbjct: 414 MVDEASMIYDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYT 473
Query: 299 SVLN 302
++++
Sbjct: 474 NLID 477
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V + +L ++ GLC G+ +++ LI+E VKG++P + Y II Y +
Sbjct: 218 SGVKITVYSLTIVVEGLCRRGEVEKSKKLIKEFSVKGIKPEAYTYNTIINAYVKQRDFSG 277
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+E ++ M+ DG + V +++ + ++S +M++ GI V Y S+++
Sbjct: 278 VEGVLKVMKKDGVVYNKVTYTLLMELSVKNGKMSDAEKLFDEMRERGIESDVHVYTSLIS 337
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 8/137 (5%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
++G +EA ++I + + + G + +F CN I S C + KR +D+ L +++
Sbjct: 411 RKGMVDEA-SMIYDVMEQKGFQAD---VFTCNTIAS-CFNRLKR-YDEAKQWLFRMM--E 462
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
V + + ++I C+ G EA+ L EM KG++P+ Y +IY Y + G +++
Sbjct: 463 GGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 243 MERIVNQMESDGTRVDT 259
++ ME++G D+
Sbjct: 523 ARKLRANMEANGMDPDS 539
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 13/156 (8%)
Query: 152 YCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
Y NLID +CK ++KR F + SS V MI C+ G+ E
Sbjct: 472 YTNLIDVYCKEGNVEEAKRLFVEM---------SSKGVQPNAITYNVMIYAYCKQGKIKE 522
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L M G++P + Y +I+G +++ R+ ++M G ++V +++S
Sbjct: 523 ARKLRANMEANGMDPDSYTYTSLIHGECIADNVDEAMRLFSEMGLKGLDQNSVTYTVMIS 582
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +MK G + Y +++ S
Sbjct: 583 GLSKAGKSDEAFGLYDEMKRKGYTIDNKVYTALIGS 618
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 5/150 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LID CK + +N++ S V + + ++I G C G EA +
Sbjct: 367 YGALIDGVCKVGEMGAAE---ILMNEM--QSKGVNITQVVFNTLIDGYCRKGMVDEASMI 421
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ M KG + F I + RL ++ ++ + +M G ++ TV ++ Y
Sbjct: 422 YDVMEQKGFQADVFTCNTIASCFNRLKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCK 481
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ +M G+ + TYN ++
Sbjct: 482 EGNVEEAKRLFVEMSSKGVQPNAITYNVMI 511
>sp|Q940A6|PP325_ARATH Pentatricopeptide repeat-containing protein At4g19440,
chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2
SV=2
Length = 838
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 58/108 (53%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G+ + + EA+ L EEMR++GLEP+ F Y +I GYG+LG + +E ++ +M S
Sbjct: 698 SLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLLREMHSK 757
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + +++ Y ++ L +M++ GI TY +
Sbjct: 758 NVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYKEFI 805
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
Query: 170 DTYARLNQLVN--------SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
D Y +L Q+V S +V+ + MI G G EA L+ EMR KG+
Sbjct: 736 DGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIV 795
Query: 222 PSGFEYKCIIYGYGRLG 238
P YK IYGY + G
Sbjct: 796 PDSITYKEFIYGYLKQG 812
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G ++GQ + E L+ EM K + P+ Y +I GY R G + + R++N+M
Sbjct: 733 ALIDGYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREK 792
Query: 254 GTRVDTVCSNMVLSSY 269
G D++ + Y
Sbjct: 793 GIVPDSITYKEFIYGY 808
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V + I++FCK ++++ + + V ++I GL G+ EA
Sbjct: 273 VYLFTTAINAFCKGGKVEEAVKLFSKMEE-----AGVAPNVVTFNTVIDGLGMCGRYDEA 327
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E+M +G+EP+ Y ++ G R + D ++ +M G + + N ++ S
Sbjct: 328 FMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDS 387
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + L++ + M G+ + TYN+++
Sbjct: 388 FIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 422
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 61/154 (39%), Gaps = 35/154 (22%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY-------------- 234
R + ++ISG C + EA ++EM +GL+P + Y +I G
Sbjct: 553 RVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWD 612
Query: 235 --GRLGLLEDM-------------------ERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
R G+L D+ + ++M S + +TV N ++ +Y
Sbjct: 613 DCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSG 672
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
LS + + MK GI + TY S++ S I
Sbjct: 673 RLSMALELREDMKHKGISPNSATYTSLIKGMSII 706
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 73/161 (45%), Gaps = 17/161 (10%)
Query: 149 VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ Y NLIDSF + S + + +++ ++ +SS Y ++I G C+ GQ
Sbjct: 378 VIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTY------NTLIKGYCKNGQADN 431
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ-----MESDGTRVDTVCS 262
AE L++EM G + + +I + + R V + M G + T+ S
Sbjct: 432 AERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLIS 491
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
L +G H++ + LW Q + + G RT N++L+
Sbjct: 492 G--LCKHGKHSK--ALELWFQFL-NKGFVVDTRTSNALLHG 527
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 51/110 (46%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L ++ISGLC+ G+ +A L + KG +++G G L++ RI ++
Sbjct: 486 LTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL 545
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G +D V N ++S +L ++L +M G+ TY+ ++
Sbjct: 546 GRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILI 595
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/118 (19%), Positives = 51/118 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G C+ + E + +EM K ++P+ Y +I Y R G L + M+ G
Sbjct: 629 MIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKG 688
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312
++ ++ + + L ++M+ G+ +V Y ++++ + M++
Sbjct: 689 ISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLGQMVK 746
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277
KG+ P + + I + + G +E+ ++ ++ME G + V N V+ G
Sbjct: 267 KGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDE 326
Query: 278 MVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM------LQDLNSNDFPLSIL 324
++ +KM + G+ ++ TY+ ++ + + L+++ FP +++
Sbjct: 327 AFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVI 379
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 5/153 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI +CK+ D+ L +++ S V + + S+I LC A
Sbjct: 416 YNTLIKGYCKNGQA---DNAERLLKEML--SIGFNVNQGSFTSVICLLCSHLMFDSALRF 470
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+ EM ++ + P G +I G + G + Q + G VDT SN +L +
Sbjct: 471 VGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCE 530
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+L +++ G +YN++++ C
Sbjct: 531 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGC 563
>sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900
OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1
Length = 907
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/242 (25%), Positives = 110/242 (45%), Gaps = 38/242 (15%)
Query: 94 AFPLYMRITEESWFQWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLF 151
A L R+ + F +P L +I L K + EAE L+ + + K+G R ++
Sbjct: 351 ALNLVKRVVD---FGVSPNLFVYNALIDSLCKGRKFHEAE-LLFDRMGKIGLRPNDVT-- 404
Query: 152 YCNLIDSFC---KHDSKRGF----DDTYARL-----NQLVN--------SSSSVYVKRQA 191
Y LID FC K D+ F DT +L N L+N S++ ++
Sbjct: 405 YSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMI 464
Query: 192 LK----------SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
K S++ G C G+ ++A L EM KG+ PS + + ++ G R GL+
Sbjct: 465 NKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIR 524
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D ++ N+M + + V N+++ Y + ++S+ +L++M + GI +Y ++
Sbjct: 525 DAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLI 584
Query: 302 NS 303
+
Sbjct: 585 HG 586
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 76/155 (49%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ YC L+ CK F+ +++++ S A+ S++ GL + G+ EA
Sbjct: 297 VVTYCTLVYGLCKVQE---FEIGLEMMDEMLCLRFSP--SEAAVSSLVEGLRKRGKIEEA 351
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
NL++ + G+ P+ F Y +I + + E + ++M G R + V ++++
Sbjct: 352 LNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDM 411
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +L + +L +M D+G+ SV YNS++N
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLING 446
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 53/111 (47%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
+ +I GLC GQ EA+ ++ + E + Y +++G+ R G LE+ + +M
Sbjct: 581 RPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQ 640
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D VC +++ H + L++M D G+ Y S++++
Sbjct: 641 RGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDA 691
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 50/115 (43%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R MI G CE G +A ++EM KG+ P + Y+ +I+G G + + V+
Sbjct: 542 RVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVD 601
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++ +C +L + +L + Q+M G+ + Y +++
Sbjct: 602 GLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDG 656
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/197 (19%), Positives = 77/197 (39%), Gaps = 42/197 (21%)
Query: 150 LFYCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+ Y ++ID+ SK G F + + + ++N ++I+GLC+ G +EA
Sbjct: 683 VIYTSMIDA----KSKTGDFKEAFGIWDLMINEGC--VPNEVTYTAVINGLCKAGFVNEA 736
Query: 209 ENLIEEMR-----------------------------------VKGLEPSGFEYKCIIYG 233
E L +M+ +KGL + Y +I G
Sbjct: 737 EVLCSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRG 796
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
+ R G +E+ ++ +M DG D + +++ N++ + + M + GI
Sbjct: 797 FCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPD 856
Query: 294 VRTYNSVLNSCSTIMSM 310
YN++++ C M
Sbjct: 857 RVAYNTLIHGCCVAGEM 873
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ + HEAE L + M GL P+ Y +I + R G L+ + +M
Sbjct: 372 ALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDT 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CS 305
G ++ N +++ + ++S ++ +M + + +V TY S++ CS
Sbjct: 432 GLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMGGYCS 484
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNS 181
+QG+ EEA LI + S + + Y +I+ C+ +D K+ +L NS
Sbjct: 799 RQGRIEEASELITRMIGDGVSPD---CITYTTMINELCRRNDVKKAI--------ELWNS 847
Query: 182 SSSVYVK--RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223
+ ++ R A ++I G C G+ +A L EM +GL P+
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
>sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protein At1g64580
OS=Arabidopsis thaliana GN=At1g64580 PE=2 SV=1
Length = 523
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 88/202 (43%), Gaps = 17/202 (8%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSK 165
N +I K+G EA L E + + V Y +LI+ FC H D+K
Sbjct: 253 NVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPN---VFTYNSLINGFCIHGCLGDAK 309
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
FD + S + ++I+G C+ + + L EM +GL F
Sbjct: 310 YMFD---------LMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAF 360
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+GY + G L +++ N+M G D V N++L ++ ++ + ++ ++ +
Sbjct: 361 TYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDL 420
Query: 286 KDSGIPFSVRTYNSVLNS-CST 306
+ S + + TYN ++ C T
Sbjct: 421 QKSEMDVDIITYNIIIQGLCRT 442
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GLC + EA L + KG++P Y +I G R GL + +++ +M+ DG
Sbjct: 435 IIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKEDG 494
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 44/216 (20%)
Query: 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSS 182
QG R + +++++ G V+ Y +I+ CK+ D + Y + + +
Sbjct: 161 QGNRFQEAVSLVDSMDGFGFVPN--VVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRAD 218
Query: 183 SSVYVKRQALKSMISGLCEMGQ-----------------PH------------------E 207
+ Y ++ISGL G+ P+ E
Sbjct: 219 AVTY------NTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLE 272
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A NL +EM + + P+ F Y +I G+ G L D + + + M S G D V N +++
Sbjct: 273 ARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLIT 332
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + +M G+ TYN++++
Sbjct: 333 GFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHG 368
>sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310,
mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2
SV=1
Length = 709
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 85/187 (45%), Gaps = 11/187 (5%)
Query: 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
FY +ID+F K + T+ R+ S + R ++I C+ G+ AE
Sbjct: 446 FYNVVIDTFGKFNCLDHAMTTFDRM-----LSEGIEPDRVTWNTLIDCHCKHGRHIVAEE 500
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
+ E M +G P Y +I YG +DM+R++ +M+S G + V ++ YG
Sbjct: 501 MFEAMERRGCLPCATTYNIMINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYG 560
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS------TIMSMLQDLNSNDFPLSIL 324
+ + L++MK G+ S YN+++N+ + ++ + + S+ S+L
Sbjct: 561 KSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLL 620
Query: 325 ELTEVLN 331
L ++N
Sbjct: 621 ALNSLIN 627
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ + K L S+IS L + G+ EAE L EE+R G++P Y ++ GY + G L+
Sbjct: 297 ATGLSAKTATLVSIISALADSGRTLEAEALFEELRQSGIKPRTRAYNALLKGYVKTGPLK 356
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHN--ELSRMVL 280
D E +V++ME G D ++++ +Y + E +R+VL
Sbjct: 357 DAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVL 397
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 96/208 (46%), Gaps = 11/208 (5%)
Query: 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI-LETLSKLGSRERELVLFYCNL 155
LY I E + + +LV +II K G +A L+ + + L ++ LV L
Sbjct: 256 LYKEI-ERDKLELDVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISAL 314
Query: 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215
DS +++ F++ L Q S + + +A +++ G + G +AE+++ EM
Sbjct: 315 ADSGRTLEAEALFEE----LRQ-----SGIKPRTRAYNALLKGYVKTGPLKDAESMVSEM 365
Query: 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275
+G+ P Y +I Y G E ++ +ME+ + ++ + +L+ + D E
Sbjct: 366 EKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGFRDRGEW 425
Query: 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ L++MK G+ + YN V+++
Sbjct: 426 QKTFQVLKEMKSIGVKPDRQFYNVVIDT 453
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%)
Query: 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262
G+ ++A +EEM+ GL+PS Y +I Y + GL E M SDG + +
Sbjct: 563 GRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLAL 622
Query: 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++++G+ + LQ MK++G+ V TY +++ +
Sbjct: 623 NSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTTLMKA 663
>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620
OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1
Length = 621
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 125/300 (41%), Gaps = 33/300 (11%)
Query: 17 CCRLRQQRLTLVQCLTARLTKQGQR----FLSSLALAVTRDSKA--ASRLISKFV--ASS 68
CCR R +L+L ++ K G S+L + + + A L+ + V
Sbjct: 117 CCRCR--KLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK 174
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P I LNAL + L + S A L R+ E + FQ N ++ + K GQ
Sbjct: 175 PTLITLNALVNGLCLNGK----VSDAVLLIDRMVE-TGFQPNEVTYGPVLKVMCKSGQ-- 227
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQL----VNSSS 183
L +E L K+ R+ +L + Y +ID CK S D+ + N++ +
Sbjct: 228 --TALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGS---LDNAFNLFNEMEIKGFKADI 282
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
+Y ++I G C G+ + L+ +M + + P + +I + + G L +
Sbjct: 283 IIYT------TLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREA 336
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E + +M G DTV ++ + N+L + L M G ++RT+N ++N
Sbjct: 337 EELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILING 396
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 92/214 (42%), Gaps = 25/214 (11%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ + LID F K R ++ + + Q S +V S+I G C+ Q +A
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTV-----TYTSLIDGFCKENQLDKA 371
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++++ M KG P+ + +I GY + L++D + +M G DTV N ++
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTE 328
+ + +L Q+M + + +Y +L+ L N P LE+ E
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG----------LCDNGEPEKALEIFE 481
Query: 329 VLNEEEVS--------VVKELEDSSVLDEAMKWD 354
+ + ++ ++ + ++S +D+A WD
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDA--WD 513
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/178 (19%), Positives = 80/178 (44%), Gaps = 8/178 (4%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E A+ L E +S+ R R ++ Y L+D C + + + ++ + S
Sbjct: 436 GKLEVAKELFQEMVSR---RVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEK-----SK 487
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+ + +I G+C + +A +L + +KG++P Y +I G + G L + +
Sbjct: 488 MELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEAD 547
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +ME DG + N+++ ++ + ++ ++++K G T V++
Sbjct: 548 LLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605
Score = 39.7 bits (91), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 51/111 (45%)
Query: 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
K ++ GLC+ G+P +A + E++ +E Y II+G ++D + +
Sbjct: 461 KILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPL 520
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D N+++ LS L +KM++ G + TYN ++ +
Sbjct: 521 KGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRA 571
Score = 35.8 bits (81), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI GLC+ G EA+ L +M G P+G Y +I + G +++ +++ G
Sbjct: 533 MIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592
Query: 255 TRVDTVCSNMVLSSYGD 271
VD MV+ D
Sbjct: 593 FSVDASTVKMVVDMLSD 609
>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930,
chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2
SV=2
Length = 629
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 89/194 (45%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 320 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 375
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 376 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G + G + ++I +M SDG D + +++L + +L + ++ +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEY 490
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 491 LQKSKMEPDIYTYN 504
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 56/108 (51%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y +I G+ R GL E+ + + +M+ DG
Sbjct: 506 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDG 565
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
T ++ N ++ + + + +++M+ G T + V+N
Sbjct: 566 TLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
++I GL + EA LI+ M +G +P F Y ++ G + G ++ ++ +ME
Sbjct: 188 FNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKME 247
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
D V ++ + ++ ++ + +M + GI +V TYNS++
Sbjct: 248 KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLI 297
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 64/155 (41%), Gaps = 21/155 (13%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLN- 176
+++L+ L K G E+ LV+F Y +I+ CK D + L+
Sbjct: 469 SILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSL 528
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ V + +Y +MISG C G EA+ L EM+ G P+ Y +I R
Sbjct: 529 KGVKPNVIIYT------TMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLR 582
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
G ++ +M S G D +MV++ D
Sbjct: 583 DGDKAASAELIKEMRSCGFVGDASTISMVINMLHD 617
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 69/159 (43%), Gaps = 13/159 (8%)
Query: 149 VLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204
V+ + LID+F K ++++ +D+ R S+ S+I+G C +
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKR---------SIDPDIFTYSSLINGFCMHDR 375
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
EA+++ E M K P+ Y +I G+ + +E+ + +M G +TV N
Sbjct: 376 LDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +KM G+P + TY+ +L+
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 474
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 53/112 (47%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C + EA L+++M V +P+ + +I+G + ++++M
Sbjct: 153 LSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMV 212
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ G + D V++ ++ + L+KM+ I V Y +++++
Sbjct: 213 ARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264
Score = 35.8 bits (81), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC ++A NL EM KG+ P+ Y +I G D R+++ M
Sbjct: 260 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 319
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ +L +M I + TY+S++N
Sbjct: 320 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 369
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 47/109 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A ++ +M G EP ++ GY + + +V+QM
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ +TV N ++ HN+ S V + +M G + TY +V+N
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNG 229
>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920
OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1
Length = 871
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 8/191 (4%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L K G+ ++A + + L S R + Y +LI +F H K +D +
Sbjct: 453 LIDGLGKVGRVDDAYKVYEKMLD---SDCRTNSIVYTSLIKNFFNHGRK---EDGHKIYK 506
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
++N + S + Q L + + + + G+P + + EE++ + P Y +I+G +
Sbjct: 507 DMINQNCSPDL--QLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIK 564
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296
G + + M+ G +DT N+V+ + ++++ L++MK G +V T
Sbjct: 565 AGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVT 624
Query: 297 YNSVLNSCSTI 307
Y SV++ + I
Sbjct: 625 YGSVIDGLAKI 635
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 62/114 (54%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+A +I G C+ G+ ++A L+EEM+ KG EP+ Y +I G ++ L++ + +
Sbjct: 588 RAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEE 647
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+S ++ V + ++ +G + L L+++ G+ ++ T+NS+L++
Sbjct: 648 AKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDA 701
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+GLC++ + ++A +EM+ +G++PS Y +I G + G + + + ++ +++G
Sbjct: 733 LINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFKANG 792
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D+ C N ++ + N ++ + G+P +T +L++
Sbjct: 793 GVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDT 841
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 100/234 (42%), Gaps = 14/234 (5%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P F A L S H S + L+ ++ +E ++ L +I K+G+ +
Sbjct: 166 PAFSAYTTLIGAFSA-VNH---SDMMLTLFQQM-QELGYEPTVHLFTTLIRGFAKEGRVD 220
Query: 129 EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188
A +L+ E K S + ++VL Y IDSF K D + +++ ++ +
Sbjct: 221 SALSLLDEM--KSSSLDADIVL-YNVCIDSFGKVGK---VDMAWKFFHEI--EANGLKPD 272
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
SMI LC+ + EA + E + P + Y +I GYG G ++ ++
Sbjct: 273 EVTYTSMIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLE 332
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + G+ + N +L+ ++ + ++MK P ++ TYN +++
Sbjct: 333 RQRAKGSIPSVIAYNCILTCLRKMGKVDEALKVFEEMKKDAAP-NLSTYNILID 385
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y +ID FCK + Y L ++ V S+I GL ++ + EA L
Sbjct: 590 YNIVIDGFCKCGK---VNKAYQLLEEMKTKGFEPTVVTYG--SVIDGLAKIDRLDEAYML 644
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
EE + K +E + Y +I G+G++G +++ I+ ++ G + N +L +
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
E++ ++ Q MK+ + TY ++N
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILING 736
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 130 AETLILETLSKLGSRERELVLF-------------YCNLIDSFCKHDSKRGFDDTYARLN 176
A IL L K+G + L +F Y LID C+ G DT L
Sbjct: 345 AYNCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRA----GKLDTAFELR 400
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+ + ++ + + M+ LC+ + EA + EEM K P + +I G G+
Sbjct: 401 DSM-QKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGK 459
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272
+G ++D ++ +M R +++ ++ ++ +H
Sbjct: 460 VGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNH 495
>sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400
OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1
Length = 577
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 325 KINPNVVTFNALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 380
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I+G C+ + E L EM +GL +
Sbjct: 381 ---LDEAKHMFELMI--SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNT 435
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I+G+ + ++ + + QM SDG + + N +L + +L + ++ +
Sbjct: 436 VTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEY 495
Query: 285 MKDSGIPFSVRTYN 298
++ S + ++ TYN
Sbjct: 496 LQRSKMEPTIYTYN 509
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P Y +I G+ R GL E+ + + +M DG
Sbjct: 511 MIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMREDG 570
Query: 255 TRVDT 259
D+
Sbjct: 571 PLPDS 575
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 93/215 (43%), Gaps = 17/215 (7%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFY 152
LAF L ++ E + + N + + +I L K ++A L E +K G R V+ Y
Sbjct: 243 LAFNLLNKM-EAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENK-GVRPN--VITY 298
Query: 153 CNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
+LI C + D+ R D R +N + + ++I + G+ EA
Sbjct: 299 SSLISCLCNYERWSDASRLLSDMIERK---INPNVVTF------NALIDAFVKEGKLVEA 349
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E L +EM + ++P F Y +I G+ L++ + + M S + V N +++
Sbjct: 350 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLING 409
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V ++M G+ + TY ++++
Sbjct: 410 FCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHG 444
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 68/168 (40%), Gaps = 11/168 (6%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R DT+ ++ HN+ S V + +M G ++ TY V+N L
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-------LCKR 238
Query: 315 NSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDL 362
D ++L E E V+ S+V+D K+ + L+L
Sbjct: 239 GDIDLAFNLLNKMEAAKIEANVVIY----STVIDSLCKYRHEDDALNL 282
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI F + R D+ Q+V S V+ +++ GLC+ G+ +A +
Sbjct: 438 YTTLIHGFFQ---ARDCDNAQMVFKQMV--SDGVHPNIMTYNTLLDGLCKNGKLEKAMVV 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E ++ +EP+ + Y +I G + G +ED + + G + D + N ++S +
Sbjct: 493 FEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCR 552
Query: 272 HNELSRMVLWLQKMKDSG 289
+KM++ G
Sbjct: 553 KGLKEEADALFRKMREDG 570
Score = 35.8 bits (81), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G A NL+ +M +E + Y +I + +D + +ME+ G
Sbjct: 231 VVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 290
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R + + + ++S ++ S L M + I +V T+N+++++
Sbjct: 291 VRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDA 339
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 53/113 (46%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L S+++G C + +A L+++M G P + +I+G + +V++M
Sbjct: 157 TLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRM 216
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + + V +V++ ++ L KM+ + I +V Y++V++S
Sbjct: 217 VQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDS 269
>sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400,
chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2
SV=1
Length = 918
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 81/374 (21%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSREREL--VLFYCNLIDSFCKHDSKRGFDDTYAR 174
++ KQG+ +E + + E RE L +L Y LID + SK G Y
Sbjct: 485 LLGGYGKQGKYDEVKKVFTEM-----KREHVLPNLLTYSTLIDGY----SKGGL---YKE 532
Query: 175 LNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
++ S ++ + ++I LC+ G A +LI+EM +G+ P+ Y II
Sbjct: 533 AMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSIID 592
Query: 233 GYGRLGLLEDMERIVNQ-------------MESDGTRVDTVCSNMVLSSYG--------D 271
+GR ++ N E++G RV + + S
Sbjct: 593 AFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQLFGQLTTESNNRTTKDCEEG 652
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS------MLQDLNSNDFPLSILE 325
ELS ++ +KM I +V T++++LN+CS S +L++L D + +
Sbjct: 653 MQELSCILEVFRKMHQLEIKPNVVTFSAILNACSRCNSFEDASMLLEELRLFDNKVYGVV 712
Query: 326 LTEVLNEEE---------VSVVKELEDS--SVLDEA---MKWDSGETK------------ 359
++ + E V E++ S S A M W G+ +
Sbjct: 713 HGLLMGQRENVWLQAQSLFDKVNEMDGSTASAFYNALTDMLWHFGQKRGAELVALEGRSR 772
Query: 360 -----------LDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTV 408
LDLH M G+A ++ W+ +R+ E H +P ++++ G GKHS V
Sbjct: 773 QVWENVWSDSCLDLHLMSSGAARAMVHAWLLNIRS-IVYEGHELPKVLSILTGWGKHSKV 831
Query: 409 RGESSVKAMVKKMM 422
G+ +++ V+ ++
Sbjct: 832 VGDGALRRAVEVLL 845
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 77/162 (47%), Gaps = 5/162 (3%)
Query: 183 SSVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+SV +K+ + +++ G + G+ E + + EM+ + + P+ Y +I GY + GL
Sbjct: 471 ASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLY 530
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
++ I + +S G R D V + ++ + + + V + +M GI +V TYNS+
Sbjct: 531 KEAMEIFREFKSAGLRADVVLYSALIDALCKNGLVGSAVSLIDEMTKEGISPNVVTYNSI 590
Query: 301 LNSC--STIMSMLQDL-NSNDFPLSILELTEVLNEEEVSVVK 339
+++ S M D N P S L+ + E V++
Sbjct: 591 IDAFGRSATMDRSADYSNGGSLPFSSSALSALTETEGNRVIQ 632
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
++A + G E A L E ++ R + V Y L+D+ CK D + L
Sbjct: 345 LLAVCSRGGLWEAARNLFDEMTNR---RIEQDVFSYNTLLDAICKGGQ---MDLAFEILA 398
Query: 177 QLVNSSSSVYVKR-----QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231
Q+ VKR + ++I G + G+ EA NL EMR G+ Y ++
Sbjct: 399 QMP-------VKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLL 451
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
Y ++G E+ I+ +M S G + D V N +L YG + + +MK +
Sbjct: 452 SIYTKVGRSEEALDILREMASVGIKKDVVTYNALLGGYGKQGKYDEVKKVFTEMKREHVL 511
Query: 292 FSVRTYNSVLNSCS 305
++ TY+++++ S
Sbjct: 512 PNLLTYSTLIDGYS 525
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MIS L G+ A+ + E G + + + +I YGR GL E+ + N M+
Sbjct: 238 AMISTLGRYGKVTIAKRIFETAFAGGYGNTVYAFSALISAYGRSGLHEEAISVFNSMKEY 297
Query: 254 GTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G R + V N V+ + G E ++ + +M+ +G+ T+NS+L CS
Sbjct: 298 GLRPNLVTYNAVIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCS 350
>sp|Q6NKW7|PP164_ARATH Pentatricopeptide repeat-containing protein At2g19280
OS=Arabidopsis thaliana GN=At2g19280 PE=2 SV=2
Length = 693
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G C +G+ +A + G PS +I R G + D E + M+++
Sbjct: 413 TMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTE 472
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G ++D V N ++ YG ++L+++ + +M+ +GI V TYN +++S
Sbjct: 473 GLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHS 522
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I + G EA +I E+ +G PS + +I G+ + G ++ + M
Sbjct: 519 LIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLR 578
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
+ D V + +L Y + + ++ K+ D+G+ V YN++++ CS
Sbjct: 579 MKPDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSV 631
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LIDS C SK D+ L Q+ S + V ++I G C+ + EAE +
Sbjct: 438 YNMLIDSLC---SKGKLDEALNMLKQMELSGCARSVI--TYNTLIDGFCKANKTREAEEI 492
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
+EM V G+ + Y +I G + +ED ++++QM +G + D N +L+ +
Sbjct: 493 FDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCR 552
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++ + +Q M +G + TY ++++
Sbjct: 553 GGDIKKAADIVQAMTSNGCEPDIVTYGTLISG 584
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 10/188 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
+I+ L K G+ +EA +E L ++ +R+ + Y LI + CK + + AR
Sbjct: 336 VISGLCKLGEVKEA----VEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE-LAR- 389
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
V +S + S+I GLC A L EEMR KG EP F Y +I
Sbjct: 390 ---VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLC 446
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
G L++ ++ QME G + N ++ + N+ +M+ G+ +
Sbjct: 447 SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSV 506
Query: 296 TYNSVLNS 303
TYN++++
Sbjct: 507 TYNTLIDG 514
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/147 (21%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214
++ FCK +D + ++ N + + ++++GLC+ G A +++
Sbjct: 265 IVHGFCKEGR---VEDALNFIQEMSNQDG-FFPDQYTFNTLVNGLCKAGHVKHAIEIMDV 320
Query: 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274
M +G +P + Y +I G +LG +++ +++QM + +TV N ++S+ N+
Sbjct: 321 MLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQ 380
Query: 275 LSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + + GI V T+NS++
Sbjct: 381 VEEATELARVLTSKGILPDVCTFNSLI 407
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 1/110 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC Q A ++E+M GL P + ++ GY G L+ RI QM G
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNS 303
V N+++ + + + ++Q+M + F + T+N+++N
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNG 304
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 48/115 (41%), Gaps = 1/115 (0%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
+ +++ G E G A + E+M G S I++G+ + G +ED + +
Sbjct: 225 KTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQE 284
Query: 250 MES-DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
M + DG D N +++ + + + M G V TYNSV++
Sbjct: 285 MSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISG 339
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 152 YCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +L+ FC+ D K+ D A + Y ++ISGLC+ G+ A
Sbjct: 543 YNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY------GTLISGLCKAGRVEVASK 596
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGR 236
L+ +++KG+ + Y +I G R
Sbjct: 597 LLRSIQMKGINLTPHAYNPVIQGLFR 622
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/196 (22%), Positives = 95/196 (48%), Gaps = 12/196 (6%)
Query: 111 PKLVAE--IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168
P L++ +I L ++G+ +E + +L +++ G E+ Y LI +CK +
Sbjct: 273 PNLISYNVVINGLCREGRMKEV-SFVLTEMNRRGYSLDEVT--YNTLIKGYCKEGNFHQA 329
Query: 169 DDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
+A L + S Y S+I +C+ G + A +++MRV+GL P+ Y
Sbjct: 330 LVMHAEMLRHGLTPSVITYT------SLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTY 383
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
++ G+ + G + + R++ +M +G V N +++ + ++ + L+ MK+
Sbjct: 384 TTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Query: 288 SGIPFSVRTYNSVLNS 303
G+ V +Y++VL+
Sbjct: 444 KGLSPDVVSYSTVLSG 459
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 57/110 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G C++ + + L+ M +KGLEP+ Y +I G R G ++++ ++ +M
Sbjct: 245 TLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRR 304
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G +D V N ++ Y + ++ +M G+ SV TY S+++S
Sbjct: 305 GYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 76/153 (49%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y L+D F S++G+ ++ Y L ++ ++ S V ++I+G C G+ +A
Sbjct: 383 YTTLVDGF----SQKGYMNEAYRVLREMNDNGFSPSV--VTYNALINGHCVTGKMEDAIA 436
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++E+M+ KGL P Y ++ G+ R +++ R+ +M G + DT+ + ++ +
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ ++M G+P TY +++N+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINA 529
Score = 52.8 bits (125), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
S+I G CE + EA +L EEM GL P F Y +I Y G LE ++ N+M
Sbjct: 490 SLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK 549
Query: 254 GTRVDTVCSNMVLSSYGDHN---ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307
G D V +++++ + E R++L L + +P V TY++++ +CS I
Sbjct: 550 GVLPDVVTYSVLINGLNKQSRTREAKRLLLKL--FYEESVPSDV-TYHTLIENCSNI 603
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID +CK R DD + L + + + + +I+GLC G+ E
Sbjct: 240 VVTYNTLIDGYCK---LRKIDDGFKLLRSM--ALKGLEPNLISYNVVINGLCREGRMKEV 294
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ EM +G Y +I GY + G + +M G + ++ S
Sbjct: 295 SFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHS 354
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM------LQDLNSNDFPLS 322
++R + +L +M+ G+ + RTY ++++ S M L+++N N F S
Sbjct: 355 MCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPS 414
Query: 323 ILELTEVLNEEEVSVVKELEDSSVLDEAMK 352
++ ++N V ++ED+ + E MK
Sbjct: 415 VVTYNALINGH--CVTGKMEDAIAVLEDMK 442
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C G A L ++M KG P+ Y +I GY +L ++D +++ M G
Sbjct: 211 LIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKG 270
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ + N+V++ + + L +M G TYN+++
Sbjct: 271 LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 31/169 (18%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L+KQ + EA+ L+L+ LFY + S D TY +
Sbjct: 561 LINGLNKQSRTREAKRLLLK-------------LFYEESVPS----------DVTY---H 594
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
L+ + S++ K ++ S+I G C G EA+ + E M K +P G Y +I+G+ R
Sbjct: 595 TLIENCSNIEFK--SVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCR 652
Query: 237 LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY---GDHNELSRMVLWL 282
G + + +M G + TV ++ + G NEL+ +++ +
Sbjct: 653 AGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHV 701
Score = 40.0 bits (92), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 47/96 (48%)
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
AEN+ +EM + P+ F Y +I G+ G ++ + ++ME+ G + V N ++
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y ++ L+ M G+ ++ +YN V+N
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000
OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1
Length = 536
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 7/179 (3%)
Query: 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184
G+ E+A L L +S G E ++V Y LI FCK + + + V S S
Sbjct: 220 GKAEKALEL-LGVMSGFGC-EPDIVT-YNTLIQGFCKSNELNKASEMFKD----VKSGSV 272
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
SMISG C+ G+ EA +L+++M G+ P+ + ++ GY + G + E
Sbjct: 273 CSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAE 332
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
I +M S G D V ++ Y ++S+ ++M G+ + TY+ ++N+
Sbjct: 333 EIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINA 391
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 54/115 (46%), Gaps = 6/115 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G C+ G+ +EA ++EEM K +P + +I G+ G + + I ++M + G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-----IPFSVRTYNSVLNSC 304
D + + +LS +++ L ++ G +P +T N+ L +C
Sbjct: 483 CSPDKITVSSLLSCLLKAG-MAKEAYHLNQIARKGQSNNVVPLETKTANATLAAC 536
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 70/157 (44%), Gaps = 8/157 (5%)
Query: 149 VLFYCNLIDSFCK-HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ + +LID +C+ +GF RL + +N+ ++ +I+ LC + +
Sbjct: 347 VVTFTSLIDGYCRVGQVSQGF-----RLWEEMNARG-MFPNAFTYSILINALCNENRLLK 400
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A L+ ++ K + P F Y +I G+ + G + + IV +ME + D + +++
Sbjct: 401 ARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILII 460
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ + V KM G T +S+L SC
Sbjct: 461 GHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLL-SC 496
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSK 165
N +L+ +++ ++G+ A L+L++ G + +L+++ K D+
Sbjct: 137 NNRLLGFLVSSFAEKGKLHFATALLLQSFEVEGC-----CMVVNSLLNTLVKLDRVEDAM 191
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
+ FD+ + R Q N + + + +I GLC +G+ +A L+ M G EP
Sbjct: 192 KLFDE-HLRF-QSCNDTKTFNI-------LIRGLCGVGKAEKALELLGVMSGFGCEPDIV 242
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGT-RVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G+ + L + ++S D V ++S Y ++ L
Sbjct: 243 TYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDD 302
Query: 285 MKDSGIPFSVRTYNSVLNSCSTIMSML 311
M GI + T+N +++ + ML
Sbjct: 303 MLRLGIYPTNVTFNVLVDGYAKAGEML 329
>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775,
mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2
SV=1
Length = 644
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/278 (23%), Positives = 116/278 (41%), Gaps = 42/278 (15%)
Query: 57 ASRLISKFV--ASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
A L+ + V P I LN L + L + ++S A L R+ E + FQ N
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLC---LNGKVSD-AVVLIDRMVE-TGFQPNEVTY 231
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDS--------- 164
++ + K GQ L +E L K+ R +L + Y +ID CK S
Sbjct: 232 GPVLNVMCKSGQ----TALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFN 287
Query: 165 ---KRGFDDTYARLNQLVNSSSSV------------YVKRQ------ALKSMISGLCEMG 203
+GF N L+ + +KR+ +I + G
Sbjct: 288 EMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEG 347
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA+ L++EM +G+ P+ Y +I G+ + LE+ ++V+ M S G D + N
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++++ Y N + + ++M G+ + TYN+++
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLV 445
Score = 49.3 bits (116), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query: 187 VKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+K A+K +I GLC+ G A NL EM +KG + Y +I G+ G +D
Sbjct: 259 IKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGA 318
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ M + V ++++ S+ +L L++M GI + TYNS+++
Sbjct: 319 KLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDG 377
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 102/280 (36%), Gaps = 74/280 (26%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS------------KRGFDD 170
K+G+ EA+ L+ E + + G + Y +LID FCK + +G D
Sbjct: 345 KEGKLREADQLLKEMMQR-GIAPNTIT--YNSLIDGFCKENRLEEAIQMVDLMISKGCDP 401
Query: 171 TYARLNQLVN------------------SSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212
N L+N S V +++ G C+ G+ A+ L
Sbjct: 402 DIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLF 461
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD------------------- 253
+EM + + P YK ++ G G LE I ++E
Sbjct: 462 QEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNA 521
Query: 254 ----------------GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297
G ++D N+++S + LS+ + +KM + G TY
Sbjct: 522 SKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTY 581
Query: 298 NSVL------NSCSTIMSMLQDLNSNDFPLSILELTEVLN 331
N ++ + +T +++++ S+ FP + + V+N
Sbjct: 582 NILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182
+ G+ E A+ L E +S+ R R ++ Y L+D C + + + ++ +
Sbjct: 450 QSGKLEVAKKLFQEMVSR---RVRPDIVSYKILLDGLCDNGELEKALEIFGKIEK----- 501
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S + + +I G+C + +A +L + +KG++ Y +I R L
Sbjct: 502 SKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSK 561
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ + +M +G D + N+++ ++ ++ + +++MK SG P V T V+N
Sbjct: 562 ADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKMVIN 621
Query: 303 SCST 306
S+
Sbjct: 622 MLSS 625
>sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710,
mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2
SV=1
Length = 987
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------HD 163
A LD K + EEA L L+ +S G ++V Y LID CK
Sbjct: 644 ALLDGFCKSHRVEEARKL-LDAMSMEGCEPNQIV--YDALIDGLCKVGKLDEAQEVKTEM 700
Query: 164 SKRGFDDTYARLNQLVNSSSSVYVKRQALKS--------------------MISGLCEMG 203
S+ GF T + L++ V KRQ L S MI GLC++G
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKV--KRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVG 758
Query: 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263
+ EA L++ M KG +P+ Y +I G+G +G +E ++ +M S G + V
Sbjct: 759 KTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYR 818
Query: 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+++ + L L++MK + P Y V+
Sbjct: 819 VLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVI 856
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ISGLCE EA + + MR P+ Y ++ G L +R++N M +G
Sbjct: 308 LISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEG 367
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++ +Y GDH+ ++ L+KM G YN ++ S
Sbjct: 368 CYPSPKIFNSLVHAYCTSGDHSYAYKL---LKKMVKCGHMPGYVVYNILIGS 416
Score = 35.8 bits (81), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/109 (21%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++ LC + A L EEM+ GL + Y ++ + + GL+E + N+M G
Sbjct: 489 VLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVG 548
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V ++ +Y ++S + M G ++ TY+++++
Sbjct: 549 CTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/122 (18%), Positives = 54/122 (44%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++ V + + + S LC G+ +A ++I EM +G P Y ++ +E
Sbjct: 441 AAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKME 500
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+ +M+ G D +++ S+ + + W +M++ G +V TY +++
Sbjct: 501 LAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALI 560
Query: 302 NS 303
++
Sbjct: 561 HA 562
>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150
OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1
Length = 761
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 59/109 (54%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI +C+ G A L EEM+ +GL P Y +I G+G++G L+D +M+
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
D + N +++ + +L + + ++MK +G+ +V +Y++++++
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDA 376
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 56/118 (47%)
Query: 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
V+ K ++ ++ ++G+ + + ++M G P+ F Y +I + G +E
Sbjct: 223 VFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAAR 282
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+ +M+ G DTV N ++ +G L V + ++MKD V TYN+++N
Sbjct: 283 GLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALIN 340
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ +C LID CK+ D + R +++ + +MI GLC+ Q A
Sbjct: 577 VVTFCVLIDGLCKNKLVSKAVDYFNR----ISNDFGLQANAAIFTAMIDGLCKDNQVEAA 632
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L E+M KGL P Y ++ G + G + + + ++M G ++D + ++
Sbjct: 633 TTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWG 692
Query: 269 YGDHNELSRMVLWLQKMKDSGI 290
N+L + +L++M GI
Sbjct: 693 LSHCNQLQKARSFLEEMIGEGI 714
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/155 (18%), Positives = 73/155 (47%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y LID C + + ++ + +++ ++ V + ++I G + A
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMD-----TAGVIPNLASYNALIHGFVKAKNMDRA 491
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L+ E++ +G++P Y I+G L +E + ++N+M+ G + +++ ++ +
Sbjct: 492 LELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDA 551
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
Y + + L +MK+ I +V T+ +++
Sbjct: 552 YFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 50/110 (45%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ C+ G +A +MR GL P+ + Y +I ++G L D R+ N+M
Sbjct: 372 TLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQV 431
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + V ++ D + KM +G+ ++ +YN++++
Sbjct: 432 GVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHG 481
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 72/166 (43%), Gaps = 11/166 (6%)
Query: 141 LGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197
+G+ R V Y +ID CK ++ RG + + LV + + SMI
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEE-MKFRGLVPDTVT-------YNSMID 305
Query: 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257
G ++G+ + EEM+ EP Y +I + + G L +M+ +G +
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365
Query: 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ + + + + M+ G+ + TY S++++
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDA 411
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 67/160 (41%), Gaps = 5/160 (3%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
G+ + V+ Y L+D+FCK + Y + ++ + S+I C+
Sbjct: 360 GNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRV-----GLVPNEYTYTSLIDANCK 414
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
+G +A L EM G+E + Y +I G +++ E + +M++ G +
Sbjct: 415 IGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLAS 474
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
N ++ + + R + L ++K GI + Y + +
Sbjct: 475 YNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFI 514
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 48/113 (42%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++ S L ++G EA +M+ + P +++ + +LG +D++R M
Sbjct: 194 VFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM 253
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R N+++ ++ ++MK G+ TYNS+++
Sbjct: 254 IGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306
>sp|Q9SHK2|PPR17_ARATH Pentatricopeptide repeat-containing protein At1g06580
OS=Arabidopsis thaliana GN=At1g06580 PE=2 SV=1
Length = 500
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 84/189 (44%), Gaps = 8/189 (4%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
+ +I K+GQ EA+ E + + + ++ Y +LI+ C H D+
Sbjct: 258 SALIDVYGKEGQLLEAKKQYNEMIQRSVNPN---IVTYNSLINGLCIHGL---LDEAKKV 311
Query: 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
LN LV S + ++I+G C+ + + ++ M G++ F Y + GY
Sbjct: 312 LNVLV--SKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGY 369
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+ G E+++ +M S G D N++L DH ++ + ++ L+ ++ S +
Sbjct: 370 CQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGI 429
Query: 295 RTYNSVLNS 303
TYN ++
Sbjct: 430 ITYNIIIKG 438
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 30/182 (16%)
Query: 152 YCNLIDSFCKHDS------------KRGFDDTYARLNQLVNSSSSVYVKRQAL------- 192
+ LID FC+ K GF+ + LVN V +A+
Sbjct: 117 FTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIV 176
Query: 193 -----------KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
++I LCE GQ + A ++++ M+ G+ P Y +I G
Sbjct: 177 GLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWG 236
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
RI++ M G D + + ++ YG +L +M + ++ TYNS++
Sbjct: 237 VSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLI 296
Query: 302 NS 303
N
Sbjct: 297 NG 298
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 61/155 (39%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +IDS C+ D + ++ V S+I+ L G +
Sbjct: 184 VVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVV-----TYNSLITRLFHSGTWGVS 238
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
++ +M G+ P + +I YG+ G L + ++ N+M + V N +++
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLING 298
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
H L L + G + TYN+++N
Sbjct: 299 LCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLING 333
>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580
OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1
Length = 763
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 71/158 (44%), Gaps = 10/158 (6%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSMISGLCEMGQPHEAE 209
Y +LID C H+ + R L N + +K + ++I GL G EA
Sbjct: 359 YRSLIDGLC-HEGETN------RALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAA 411
Query: 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269
L EM KGL P + ++ G ++G + D + +V M S G D N+++ Y
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST 306
++ + L M D+G+ V TYNS+LN C T
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKT 509
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 81/168 (48%), Gaps = 6/168 (3%)
Query: 135 LETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
L L+ + S+ E+ V+ YC ++ F + + K + Y +++ S S+ +
Sbjct: 166 LRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKA---EGYELFGKMLASGVSLCL--STFN 220
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++ LC+ G E E L++++ +G+ P+ F Y I G + G L+ R+V +
Sbjct: 221 KLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQ 280
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G + D + N ++ +++ ++L KM + G+ TYN+++
Sbjct: 281 GPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 54/112 (48%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ + EAE + +M +GLEP + Y +I GY + G+++ ERIV +
Sbjct: 291 NLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFN 350
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D ++ E +R + + GI +V YN+++ S
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLS 402
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 177 QLVN--SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
QL N S + + Q +++GLC+MG +A+ L++ M KG P F + +I+GY
Sbjct: 412 QLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGY 471
Query: 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294
+E+ I++ M +G D N +L+ ++ ++ + M + G ++
Sbjct: 472 STQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNL 531
Query: 295 RTYNSVLNS 303
T+N +L S
Sbjct: 532 FTFNILLES 540
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 64/155 (41%), Gaps = 5/155 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y NLI CK+ F + L ++VN + ++I+G C+ G A
Sbjct: 286 VITYNNLIYGLCKNSK---FQEAEVYLGKMVNEG--LEPDSYTYNTLIAGYCKGGMVQLA 340
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E ++ + G P F Y+ +I G G + N+ G + + + N ++
Sbjct: 341 ERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKG 400
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +M + G+ V+T+N ++N
Sbjct: 401 LSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNG 435
Score = 32.7 bits (73), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 14/191 (7%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V Y +L++ CK F+D +V + + ++ LC + EA
Sbjct: 496 VYTYNSLLNGLCKTSK---FEDVMETYKTMVEKGCAPNL--FTFNILLESLCRYRKLDEA 550
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV--DTVCSNMVL 266
L+EEM+ K + P + +I G+ + G L+ + +ME + +V T N+++
Sbjct: 551 LGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKME-EAYKVSSSTPTYNIII 609
Query: 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS-CST-----IMSMLQDLNSNDFP 320
++ + ++ Q+M D + TY +++ C T L ++ N F
Sbjct: 610 HAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFI 669
Query: 321 LSILELTEVLN 331
S+ L V+N
Sbjct: 670 PSLTTLGRVIN 680
>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910
OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1
Length = 632
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 89/192 (46%), Gaps = 12/192 (6%)
Query: 110 NPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 325 NPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR-- 378
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 379 -LDEAKHMFELMI--SKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVT 435
Query: 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286
Y +I+G+ + ++ + + QM S G + + N++L + +L++ ++ + ++
Sbjct: 436 YTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 495
Query: 287 DSGIPFSVRTYN 298
S + + TYN
Sbjct: 496 RSTMEPDIYTYN 507
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C + +A L+++M G +P F + +I+G + +V+QM
Sbjct: 156 LSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMV 215
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311
G + D V V++ ++ + L+KM+ I V YN++++ M
Sbjct: 216 QRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMD 275
Query: 312 QDLN 315
LN
Sbjct: 276 DALN 279
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + L + +KG+ P+ Y +I G+ R G E+ + ++ +M+ DG
Sbjct: 509 MIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDG 568
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
++ N ++ + GD + ++ ++M+ G T V N
Sbjct: 569 PLPNSGTYNTLIRARLRDGDREASAELI---KEMRSCGFAGDASTIGLVTN 616
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLC+ +A NL EM KG+ P F Y +I G D R+++ M
Sbjct: 263 TIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIER 322
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ +L +M I + TY+S++N
Sbjct: 323 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 372
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
A +MISG C G EA++L+++M+ G P+ Y +I R G E ++ +M
Sbjct: 540 AYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASAELIKEM 599
Query: 251 ESDGTRVDT 259
S G D
Sbjct: 600 RSCGFAGDA 608
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 45/109 (41%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
I+ C Q A ++ +M G EP ++ GY + D +V+QM G
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ DT ++ HN+ S V + +M G + TY +V+N
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH----DSKRGFDDTY 172
II L K ++A L E +K G R V Y +LI C + D+ R D
Sbjct: 264 IIDGLCKYKHMDDALNLFTEMDNK-GIRPD--VFTYSSLISCLCNYGRWSDASRLLSDMI 320
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
R +N + + ++I + G+ EAE L +EM + ++P F Y +I
Sbjct: 321 ERK---INPNVVTF------SALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLIN 371
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G+ L++ + + M S + V + ++ + + + ++M G+
Sbjct: 372 GFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVG 431
Query: 293 SVRTYNSVLNS 303
+ TY ++++
Sbjct: 432 NTVTYTTLIHG 442
>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130,
mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2
SV=1
Length = 630
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 90/194 (46%), Gaps = 12/194 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP +V A I AF+ K+G+ EAE L E + + + + Y +LI+ FC HD
Sbjct: 321 KINPNVVTFSALIDAFV-KEGKLVEAEKLYDEMIKRSIDPD---IFTYSSLINGFCMHDR 376
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D+ ++ S + ++I G C+ + E L EM +GL +
Sbjct: 377 ---LDEAKHMFELMI--SKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNT 431
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I+G+ + ++ + + QM SDG D + +++L ++ ++ ++ +
Sbjct: 432 VTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEY 491
Query: 285 MKDSGIPFSVRTYN 298
++ S + + TYN
Sbjct: 492 LQRSKMEPDIYTYN 505
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 56/113 (49%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
L S+++G C + +A +L+ +M G +P F + +I+G R + +V++M
Sbjct: 153 TLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRM 212
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V +V++ ++ + L+KM+ I V YN+++++
Sbjct: 213 VVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 43/75 (57%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G+C+ G+ + +L + +KG++P+ Y ++ G+ R GL E+ + + +M+ +G
Sbjct: 507 MIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEG 566
Query: 255 TRVDTVCSNMVLSSY 269
D+ N ++ ++
Sbjct: 567 PLPDSGTYNTLIRAH 581
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GLC+ G A +L+++M +EP Y II + D + +M++ G
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKG 286
Query: 255 TRVDTVCSNMV---LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R + V N + L +YG ++ SR+ L M + I +V T+++++++
Sbjct: 287 IRPNVVTYNSLIRCLCNYGRWSDASRL---LSDMIERKINPNVVTFSALIDA 335
Score = 35.8 bits (81), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 47/110 (42%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC ++A NL EM KG+ P+ Y +I G D R+++ M
Sbjct: 261 TIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIER 320
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V + ++ ++ +L +M I + TY+S++N
Sbjct: 321 KINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLING 370
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 5/152 (3%)
Query: 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
Y LI F + R D+ Q+V S V ++ GLC G+ A +
Sbjct: 434 YTTLIHGFFQ---ARECDNAQIVFKQMV--SDGVLPDIMTYSILLDGLCNNGKVETALVV 488
Query: 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271
E ++ +EP + Y +I G + G +ED + + G + + V ++S +
Sbjct: 489 FEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCR 548
Query: 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++MK+ G TYN+++ +
Sbjct: 549 KGLKEEADALFREMKEEGPLPDSGTYNTLIRA 580
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/113 (19%), Positives = 50/113 (44%)
Query: 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250
++I + G+ EAE L +EM + ++P F Y +I G+ L++ + + M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELM 387
Query: 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
S + V N ++ + + + ++M G+ + TY ++++
Sbjct: 388 ISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHG 440
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
+++L+ L G E LV+F Y +I+ CK D + L
Sbjct: 470 SILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSL-- 527
Query: 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237
S V +M+SG C G EA+ L EM+ +G P Y +I + R
Sbjct: 528 ---SLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584
Query: 238 GLLEDMERIVNQMES 252
G ++ +M S
Sbjct: 585 GDKAASAELIREMRS 599
>sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475
OS=Arabidopsis thaliana GN=At5g18475 PE=2 SV=1
Length = 506
Score = 56.2 bits (134), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 60/112 (53%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+G C G+ A+ +++ M+ G P+ + Y ++ G+ ++G +++ ++ ++++ G
Sbjct: 274 MINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTG 333
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306
++DTV +++ + + E + L +MK S TYN +L S+
Sbjct: 334 LKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSS 385
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 17/220 (7%)
Query: 86 THPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE 145
H R S A L+ + + +P +I + G+ E A+ IL+ + K G
Sbjct: 244 AHSR-SKEAVELFEDMISKEGISPDPVTFNVMINGFCRAGEVERAKK-ILDFMKKNGCNP 301
Query: 146 RELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
V Y L++ FCK ++K+ FD+ + + + ++++ C
Sbjct: 302 N--VYNYSALMNGFCKVGKIQEAKQTFDEV---------KKTGLKLDTVGYTTLMNCFCR 350
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G+ EA L+ EM+ Y I+ G G E+ ++++Q S+G ++
Sbjct: 351 NGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGS 410
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++L++ + EL + V +L M + GI T+N ++
Sbjct: 411 YRIILNALCCNGELEKAVKFLSVMSERGIWPHHATWNELV 450
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/110 (20%), Positives = 55/110 (50%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++G C++G+ EA+ +E++ GL+ Y ++ + R G ++ +++ +M++
Sbjct: 308 ALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGETDEAMKLLGEMKAS 367
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R DT+ N++L + L + G+ + +Y +LN+
Sbjct: 368 RCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVHLNKGSYRIILNA 417
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +LI+ FC HD
Sbjct: 250 KINPNLVTFNALIDAFV-KEGKFVEAEKLHDDMIKRSIDPD---IFTYNSLINGFCMHDR 305
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 306 ---LDKAKQMFEFMV--SKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 360
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 361 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 420
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 421 MQKSEIKLDIYIYTTMI 437
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 51 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 110
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
R DT+ ++ HN+ S V + +M G ++ TY V+N
Sbjct: 111 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 159
Score = 40.4 bits (93), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 57/287 (19%), Positives = 108/287 (37%), Gaps = 42/287 (14%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNAL 77
C R+ +++L L ++ K G S + L+ + + IS VA Q + +
Sbjct: 54 CFCRRSQISLALALLGKMMKLGYE-PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG-- 110
Query: 78 SHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILET 137
PDT ++L L++ +E +A +D+ QR L+
Sbjct: 111 ---YRPDTI--TFTTLIHGLFLH-----------NKASEAVALVDRMVQRGCQPNLVT-- 152
Query: 138 LSKLGSRERELVLFYCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKRQALKSMI 196
Y +++ CK RG D + LN++ ++ + ++I
Sbjct: 153 --------------YGVVVNGLCK----RGDIDLAFNLLNKM--EAAKIEADVVIFNTII 192
Query: 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
LC+ +A NL +EM KG+ P+ Y +I G D ++++ M
Sbjct: 193 DSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKIN 252
Query: 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ + M I + TYNS++N
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLING 299
Score = 38.9 bits (89), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 42/76 (55%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G+C+ G+ + +L + +KG++P+ Y +I G LL++ ++ +M+ D
Sbjct: 435 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 494
Query: 254 GTRVDTVCSNMVLSSY 269
G D+ N ++ ++
Sbjct: 495 GPLPDSGTYNTLIRAH 510
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G+ +A + + M+ ++ + Y +I G + G ++D + + G
Sbjct: 401 LLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKG 460
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + V N ++S L L+KMK+ G TYN+++ +
Sbjct: 461 VKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRA 509
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LI+ FCK+D + D + V +V R +I C++G+ +
Sbjct: 366 LITYNALINGFCKNDMLKEALDMFGS----VKGQGAVPTTRM-YNMLIDAYCKLGKIDDG 420
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L EEM +G+ P Y C+I G R G +E +++ +Q+ S G D V ++++
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTFHILMEG 479
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
Y E + + L++M G+ TYN V+
Sbjct: 480 YCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVM 512
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 71/148 (47%), Gaps = 7/148 (4%)
Query: 155 LIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213
LID F K D+ G + L+Q V + Y S+I+GLC G+ EA ++ +
Sbjct: 302 LIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISY------NSLINGLCNGGKISEAISMRD 355
Query: 214 EMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273
+M G++P+ Y +I G+ + +L++ + ++ G T NM++ +Y
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
++ ++M+ GI V TYN ++
Sbjct: 416 KIDDGFALKEEMEREGIVPDVGTYNCLI 443
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM---ERIVNQME 251
+I+ LC+ G+ ++A +++E+M+V G P+ Y +I GY +LG M + ++ +M
Sbjct: 229 VINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMV 288
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + N+++ + + L + ++M D + +V +YNS++N
Sbjct: 289 ENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLING 340
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 1/107 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD- 253
++ G C G+ +A L++EM GL+P Y ++ GY + G L+ + QME +
Sbjct: 476 LMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKER 535
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
R++ N++L Y +L + L +M + G+ + TY V
Sbjct: 536 RLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIV 582
>sp|P0C7Q9|PPR56_ARATH Pentatricopeptide repeat-containing protein At1g22960,
mitochondrial OS=Arabidopsis thaliana GN=At1g22960 PE=2
SV=1
Length = 718
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 54/109 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G E GQ A NL +EM K L PS Y +IYG+ + G LE + +M+
Sbjct: 555 TVIRGYLENGQFKMARNLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKR 614
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
G R + + N +L + +L KM++ GIP + +Y +++
Sbjct: 615 GVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEGIPPNKYSYTMLIS 663
Score = 38.9 bits (89), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Query: 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
S V + +I G C+ G +A + +EM G+ P+ Y I G ++D
Sbjct: 302 SGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDD 361
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
+++ M + D V N ++ Y + L ++ I S+ TYN++++
Sbjct: 362 ARELLSSMAAP----DVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLID 417
Query: 303 S 303
Sbjct: 418 G 418
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 32/165 (19%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQLVN-------SSSSVYV-----------KRQALKSM- 195
LI+ +CK FDD + ++++N S+ ++Y+ R+ L SM
Sbjct: 314 LIEGYCKQGL---FDDAWGVTDEMLNAGIYPTTSTYNIYICALCDFGRIDDARELLSSMA 370
Query: 196 ----------ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245
+ G +MG+ EA L +++R + PS Y +I G G LE +R
Sbjct: 371 APDVVSYNTLMHGYIKMGKFVEASLLFDDLRAGDIHPSIVTYNTLIDGLCESGNLEGAQR 430
Query: 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ +M + D + ++ + + LS +M GI
Sbjct: 431 LKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRKGI 475
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G + G+ +A EM+ +G+ P+ + ++YG + G +++ R + +ME +G
Sbjct: 591 LIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGMCKAGNIDEAYRYLCKMEEEG 650
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
+ M++S D + +V ++M D I
Sbjct: 651 IPPNKYSYTMLISKNCDFEKWEEVVKLYKEMLDKEI 686
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 61/143 (42%), Gaps = 10/143 (6%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G + G+ EA +MR G + + + +I GY + GL +D + ++M + G
Sbjct: 279 LINGFSKNGKMEEARRFHGDMRRSGFAVTPYSFNPLIEGYCKQGLFDDAWGVTDEMLNAG 338
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ-- 312
T N+ + + D + L M V +YN++++ + ++
Sbjct: 339 IYPTTSTYNIYICALCDFGRIDDARELLSSMAAP----DVVSYNTLMHGYIKMGKFVEAS 394
Query: 313 ----DLNSNDFPLSILELTEVLN 331
DL + D SI+ +++
Sbjct: 395 LLFDDLRAGDIHPSIVTYNTLID 417
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I GLCE G A+ L EEM + + P Y ++ G+ + G L + ++M
Sbjct: 414 TLIDGLCESGNLEGAQRLKEEMTTQLIFPDVITYTTLVKGFVKNGNLSMATEVYDEMLRK 473
Query: 254 GTRVD 258
G + D
Sbjct: 474 GIKPD 478
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 66/154 (42%), Gaps = 6/154 (3%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
++ Y LID C+ + G RL + + ++ ++ +++ G + G A
Sbjct: 409 IVTYNTLIDGLCESGNLEG----AQRLKEEM-TTQLIFPDVITYTTLVKGFVKNGNLSMA 463
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-ESDGTRVDTVCSNMVLS 267
+ +EM KG++P G+ Y G RLG + R+ +M +D D N+ +
Sbjct: 464 TEVYDEMLRKGIKPDGYAYTTRAVGELRLGDSDKAFRLHEEMVATDHHAPDLTIYNVRID 523
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
L + + + +K+ G+ TY +V+
Sbjct: 524 GLCKVGNLVKAIEFQRKIFRVGLVPDHVTYTTVI 557
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 57/109 (52%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+++GL + + +AE + EMR KG+ P F Y +I G+ +LG ++ I ++M +G
Sbjct: 598 LMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEG 657
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + NM+L + E+ + L +M G+ + TY ++++
Sbjct: 658 LTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDG 706
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 1/108 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ G C G+ +A+ L++EM VKGL P+ Y II GY + G L + R+ ++M+ G
Sbjct: 668 LLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKG 727
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D+ ++ N++ R + K G S +N+++N
Sbjct: 728 LVPDSFVYTTLVDGCCRLNDVERAITIFGTNK-KGCASSTAPFNALIN 774
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%)
Query: 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241
+S + + QA S+I G C + L+ EM+ + + S + Y ++ G G L+
Sbjct: 375 ASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLD 434
Query: 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
IV +M + G R + V ++ ++ ++ + L++MK+ GI + YNS++
Sbjct: 435 GAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLI 494
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/110 (21%), Positives = 54/110 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+G ++G +A ++ +EM +GL P+ Y ++ G+ R G +E + ++++M G
Sbjct: 633 LINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKG 692
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
+ V ++ Y +L+ +MK G+ Y ++++ C
Sbjct: 693 LHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGC 742
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 78/194 (40%), Gaps = 8/194 (4%)
Query: 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169
+P ++ + G + A ++ E ++ S R V+ Y LI +F ++ F
Sbjct: 416 SPYTYGTVVKGMCSSGDLDGAYNIVKEMIA---SGCRPNVVIYTTLIKTFLQNSR---FG 469
Query: 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229
D L ++ + S+I GL + + EA + + EM GL+P+ F Y
Sbjct: 470 DAMRVLKEM--KEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGA 527
Query: 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289
I GY ++ V +M G + V +++ Y ++ + M D G
Sbjct: 528 FISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQG 587
Query: 290 IPFSVRTYNSVLNS 303
I +TY ++N
Sbjct: 588 ILGDAKTYTVLMNG 601
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIV 247
++I G C+ G EA L +EM++KGL P F Y ++ G R L D+ER +
Sbjct: 702 TIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR---LNDVERAI 752
Score = 40.8 bits (94), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/143 (20%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 175 LNQLVNSSSSVYVKRQALKS--MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
LN+L++ S + K + MI LC+ G A+ L +M+ L P+ Y ++
Sbjct: 789 LNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLN 848
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KD 287
GY ++G +M + ++ + G D + +++++++ ++ ++ + +M D
Sbjct: 849 GYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVD 908
Query: 288 SGIPFSVRTYNSVLNSCSTIMSM 310
G S+ T ++L+ + + M
Sbjct: 909 DGCKLSISTCRALLSGFAKVGEM 931
>sp|Q9LVD3|PP434_ARATH Pentatricopeptide repeat-containing protein At5g57250,
mitochondrial OS=Arabidopsis thaliana GN=At5g57250 PE=2
SV=2
Length = 971
Score = 55.5 bits (132), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 55/109 (50%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I GL + G EA L+ +M +G+EP+ Y II G ++G LE+ + N++ S G
Sbjct: 283 LIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVG 342
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
VD ++ L+R L M+ GI S+ TYN+V+N
Sbjct: 343 IEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVING 391
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY-----GYGRLGLLEDMERIVN 248
+++S LC++G+ E +L V+ LE GFE+ C+ Y GY + G L D
Sbjct: 212 TLVSALCQLGKVDEVRDL-----VRRLEDEGFEFDCVFYSNWIHGYFKGGALVDALMQDR 266
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M G D V ++++ + + L KM G+ ++ TY +++
Sbjct: 267 EMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAII 319
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ G +AE L++ M KGL P+ Y I+ GY +LG ED R+V++
Sbjct: 731 LIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGR 790
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D + ++ Y ++ + + KD I
Sbjct: 791 VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNI 826
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 4/157 (2%)
Query: 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209
L +C+LI F + K D+ L + N + + ++ISG C++G+P A
Sbjct: 135 LTFCSLIYRFVE---KGEMDNAIEVLEMMTNKNVNYPFDNFVCSAVISGFCKIGKPELAL 191
Query: 210 NLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
E G L P+ Y ++ +LG ++++ +V ++E +G D V + +
Sbjct: 192 GFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDEGFEFDCVFYSNWIHG 251
Query: 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
Y L ++ ++M + G+ V +Y+ +++ S
Sbjct: 252 YFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLS 288
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
V+ Y +I+ CK GF L S V + S+I+GLC+ G EA
Sbjct: 655 VIDYTIIINGLCKE----GFLVKALNLCSFAKSRG-VTLNTITYNSLINGLCQQGCLVEA 709
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268
L + + GL PS Y +I + GL D E++++ M S G + + N ++
Sbjct: 710 LRLFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 769
Query: 269 Y 269
Y
Sbjct: 770 Y 770
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 21/191 (10%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELV----LFYCNLIDSFCKHDSKRGFDDTY 172
+I L K+G EEA L LG +E V + Y +I CK ++ +
Sbjct: 283 LIDGLSKEGNVEEA-------LGLLGKMIKEGVEPNLITYTAIIRGLCKMGK---LEEAF 332
Query: 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232
N+++ S + V ++I G+C G + A +++ +M +G++PS Y +I
Sbjct: 333 VLFNRIL--SVGIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVIN 390
Query: 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292
G G + + + + S G D + + +L SY + ++ ++ ++ IP
Sbjct: 391 GLCMAGRVSEADEV-----SKGVVGDVITYSTLLDSYIKVQNIDAVLEIRRRFLEAKIPM 445
Query: 293 SVRTYNSVLNS 303
+ N +L +
Sbjct: 446 DLVMCNILLKA 456
Score = 36.2 bits (82), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Query: 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176
+I L +QG EA L ++L +G E+ Y LID+ CK F D L+
Sbjct: 696 LINGLCQQGCLVEALRL-FDSLENIGLVPSEVT--YGILIDNLCKEGL---FLDAEKLLD 749
Query: 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236
+V S + S++ G C++GQ +A ++ + + P F +I GY +
Sbjct: 750 SMV--SKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCK 807
Query: 237 LGLLEDMERIVNQMESDGTRVD 258
G +E+ + + + D
Sbjct: 808 KGDMEEALSVFTEFKDKNISAD 829
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
MG EA+ L M L P Y +I GY + G +E+ + N++ VC
Sbjct: 460 MGAYGEADALYRAMPEMDLTPDTATYATMIKGYCKTGQIEEALEMFNELRKSSVSA-AVC 518
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N ++ + L L ++ + G+ + T ++L+S
Sbjct: 519 YNRIIDALCKKGMLDTATEVLIELWEKGLYLDIHTSRTLLHS 560
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 56/108 (51%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++++GLC+ G+ EA+NL EM + L+P Y I+ + + G + R++ ME
Sbjct: 529 TLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKK 588
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G N ++ G N++ + + +MK+ GI ++ TYN+ +
Sbjct: 589 GCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAI 636
Score = 55.5 bits (132), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I LC+ A L +EM KG +P+ F + ++ GY + GL + ++N MES G
Sbjct: 153 LIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAMESFG 212
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++SS+ G +++ +MV +KM++ G+ + T+NS +++
Sbjct: 213 VLPNKVIYNTIVSSFCREGRNDDSEKMV---EKMREEGLVPDIVTFNSRISA 261
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 21/192 (10%)
Query: 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249
Q+ + GL G+ EAE ++++M KG+ PS + Y ++ G +LG+L D + IV
Sbjct: 327 QSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGL 386
Query: 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS------ 303
M+ +G D V +L Y ++ LQ+M + + T N +L+S
Sbjct: 387 MKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR 446
Query: 304 CSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLH 363
S +L+ +N + L + +V L S LD+A++ G + +H
Sbjct: 447 ISEAEELLRKMNEKGYGLDTVTCN--------IIVDGLCGSGELDKAIEIVKG---MRVH 495
Query: 364 GM----HLGSAY 371
G +LG++Y
Sbjct: 496 GSAALGNLGNSY 507
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 72/178 (40%), Gaps = 42/178 (23%)
Query: 177 QLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234
+L+N+ S V + +++S C G+ ++E ++E+MR +GL P + I
Sbjct: 203 ELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262
Query: 235 GRLGLLEDMERIVNQMESDG----TRVDTVCSNMVLSSY-------------------GD 271
+ G + D RI + ME D R +++ N++L + D
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 272 HNELSRMVLWLQ----------------KMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313
L +WLQ +M D GI S+ +YN +++ + ML D
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCK-LGMLSD 379
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 23/130 (17%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLE-----------------------PSGFEYKCII 231
++ GLC G+ +A +++ MRV G P Y ++
Sbjct: 472 IVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLL 531
Query: 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291
G + G + + + +M + + D+V N+ + + ++S L+ M+ G
Sbjct: 532 NGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCH 591
Query: 292 FSVRTYNSVL 301
S+ TYNS++
Sbjct: 592 KSLETYNSLI 601
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 59/122 (48%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S S + +MI G C+ G + A+ L+ +MRV L+PS F+Y C++ + G L
Sbjct: 486 SDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSL 545
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ R+ +M+ D D V N+++ ++ L M +G+ + TY+ +
Sbjct: 546 DQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKL 605
Query: 301 LN 302
+N
Sbjct: 606 IN 607
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 91/214 (42%), Gaps = 37/214 (17%)
Query: 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-HDSKRG---FDDT------- 171
K G+ +EA + E K E +LV+ Y +LI FC + RG FD+
Sbjct: 224 KAGKMDEAMGFLKEM--KFMGLEADLVV-YTSLIRGFCDCGELDRGKALFDEVLERGDSP 280
Query: 172 -----------YARLNQLVNSSS--------SVYVKRQALKSMISGLCEMGQPHEAENLI 212
+ +L QL +S V +I GLC +G+ EA L+
Sbjct: 281 CAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLL 340
Query: 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS---SY 269
M K EP+ Y II + GL+ D IV M+ TR D + N++L +
Sbjct: 341 NLMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAK 400
Query: 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
GD +E S+++ + K P V +YN++++
Sbjct: 401 GDLDEASKLLYLMLKDSSYTDP-DVISYNALIHG 433
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 52/107 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC + +A +L+ EMR L P F Y +I G+ LE + N+M+ G
Sbjct: 148 LLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSG 207
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
V +++ ++ ++ + +L++MK G+ + Y S++
Sbjct: 208 CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLI 254
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 155 LIDSFCKHDSKRGFDDTYARLNQL----VNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
LID+FCK D+ L ++ + + VY S+I G C+ G+ +
Sbjct: 218 LIDAFCKAGK---MDEAMGFLKEMKFMGLEADLVVYT------SLIRGFCDCGELDRGKA 268
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256
L +E+ +G P Y +I G+ +LG L++ I M G R
Sbjct: 269 LFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVR 314
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 42/96 (43%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI G + G AE+L+ M GL P F Y +I + +LG L++ ++M G
Sbjct: 570 MIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSG 629
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290
D + VL E ++ ++K+ D I
Sbjct: 630 FEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDI 665
Score = 35.4 bits (80), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 48/108 (44%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G CE + +A L EM+ G S + +I + + G +++ + +M+
Sbjct: 182 TVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFM 241
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G D V ++ + D EL R ++ + G TYN+++
Sbjct: 242 GLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLI 289
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 47/197 (23%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 108 QWNPKLV---AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164
+ NP LV A I AF+ K+G+ EAE L + + + + + Y +L++ FC HD
Sbjct: 325 KINPNLVTFNALIDAFV-KEGKFVEAEKLYDDMIKRSIDPD---IFTYNSLVNGFCMHDR 380
Query: 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224
D +V S + ++I G C+ + + L EM +GL
Sbjct: 381 ---LDKAKQMFEFMV--SKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDT 435
Query: 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284
Y +I G G ++ +++ QM SDG D + +++L ++ +L + +
Sbjct: 436 VTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDY 495
Query: 285 MKDSGIPFSVRTYNSVL 301
M+ S I + Y +++
Sbjct: 496 MQKSEIKLDIYIYTTMI 512
Score = 42.0 bits (97), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 62/151 (41%), Gaps = 8/151 (5%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ C Q A L+ +M G EPS ++ GY + D +V+QM G
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314
R DT+ ++ HN+ S V + +M G ++ TY V+N L
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG-------LCKR 238
Query: 315 NSNDFPLSILELTEVLN-EEEVSVVKELEDS 344
D L++L E E +V + + DS
Sbjct: 239 GDTDLALNLLNKMEAAKIEADVVIFNTIIDS 269
Score = 41.2 bits (95), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/288 (20%), Positives = 110/288 (38%), Gaps = 44/288 (15%)
Query: 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNAL 77
C R+ +++L L ++ K G S + L+ + + IS VA Q + +
Sbjct: 129 CFCRRSQISLALALLGKMMKLGYE-PSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG-- 185
Query: 78 SHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILET 137
PDT ++L L++ +E +A +D+ QR L+
Sbjct: 186 ---YRPDTI--TFTTLIHGLFLH-----------NKASEAVALVDRMVQRGCQPNLVT-- 227
Query: 138 LSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL--KSM 195
Y +++ CK RG DT LN L+N + ++ + ++
Sbjct: 228 --------------YGVVVNGLCK----RG--DTDLALN-LLNKMEAAKIEADVVIFNTI 266
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I LC+ +A NL +EM KG+ P+ Y +I G D ++++ M
Sbjct: 267 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 326
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ + M I + TYNS++N
Sbjct: 327 NPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNG 374
Score = 40.0 bits (92), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 83/205 (40%), Gaps = 16/205 (7%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
E + N + +I+ L G+ +A L+ + + K LV F LID+F K
Sbjct: 287 ETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEK--KINPNLVTFNA-LIDAFVKE 343
Query: 163 ----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218
++++ +DD R S+ S+++G C + +A+ + E M K
Sbjct: 344 GKFVEAEKLYDDMIKR---------SIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSK 394
Query: 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278
P Y +I G+ + +ED + +M G DTV ++ +
Sbjct: 395 DCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNA 454
Query: 279 VLWLQKMKDSGIPFSVRTYNSVLNS 303
++M G+P + TY+ +L+
Sbjct: 455 QKVFKQMVSDGVPPDIMTYSILLDG 479
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+MI G+C+ G+ + +L + +KG++P+ Y +I G LL++ ++ +M+ D
Sbjct: 510 TMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKED 569
Query: 254 G 254
G
Sbjct: 570 G 570
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 55/279 (19%), Positives = 103/279 (36%), Gaps = 40/279 (14%)
Query: 57 ASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114
AS+L+S + +P + NAL + L + R + F +N
Sbjct: 314 ASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN---- 369
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------------- 161
++ + ++A+ + +SK + V+ Y LI FCK
Sbjct: 370 -SLVNGFCMHDRLDKAKQMFEFMVSKDCFPD---VVTYNTLIKGFCKSKRVEDGTELFRE 425
Query: 162 --HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS---------------GLCEMGQ 204
H G TY L Q + ++ K M+S GLC G+
Sbjct: 426 MSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGK 485
Query: 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264
+A + + M+ ++ + Y +I G + G ++D + + G + + V N
Sbjct: 486 LEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNT 545
Query: 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
++S L L+KMK+ G + TYN+++ +
Sbjct: 546 MISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIRA 584
>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950
OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2
Length = 483
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +MI G CE G A L EM KG+ P+ F Y +I+G+ + G + +E N
Sbjct: 318 RVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVMIHGHFKRGEISLVEAFYN 377
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
+M +G + N ++ + H + + M ++G+ + TYN+++
Sbjct: 378 EMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALI 430
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 153 CN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211
CN +I FC H D+ + + S + V ++I G C+ + + L
Sbjct: 391 CNTMIKGFCSHGKS---DEAFEIFKNM--SETGVTPNAITYNALIKGFCKENKVEKGLKL 445
Query: 212 IEEMRVKGLEPSGFEYKCII 231
+E++ GL+PSG Y ++
Sbjct: 446 YKELKALGLKPSGMAYAALV 465
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166
F+ P L+ + + L ++G EEA + L +G + CN + C R
Sbjct: 141 FKPEPTLLEQYVKCLSEEGLVEEA-IEVYNVLKDMGISSSVVT---CNSVLLGCL--KAR 194
Query: 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226
D + ++V S + ++ +I LC+ G E L+++ +GL+P +
Sbjct: 195 KLDRFWELHKEMVESE----FDSERIRCLIRALCDGGDVSEGYELLKQGLKQGLDPGQYV 250
Query: 227 YKCIIYGYGRLGLLEDMERIVNQM 250
Y +I G+ +G M +++ M
Sbjct: 251 YAKLISGFCEIGNYACMSEVLHTM 274
>sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130,
mitochondrial OS=Arabidopsis thaliana GN=At3g04130 PE=2
SV=2
Length = 508
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 77/167 (46%), Gaps = 11/167 (6%)
Query: 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL-VNSSSSVYVKRQALKSMISGLC 200
G R V+ Y +I +C+ F Y L+++ N S + +++S L
Sbjct: 252 GHGFRPCVISYTTIIRCYCQQFE---FIKVYEMLSEMEANGSPPNSI---TYTTIMSSLN 305
Query: 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMESDGTRVDT 259
+ EA + M+ G +P Y C+I+ R G LE+ ER+ +M G ++T
Sbjct: 306 AQKEFEEALRVATRMKRSGCKPDSLFYNCLIHTLARAGRLEEAERVFRVEMPELGVSINT 365
Query: 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGI--PFSVRTYNSVLNSC 304
N +++ Y H+E + + L++M+ S + P V TY +L SC
Sbjct: 366 STYNSMIAMYCHHDEEDKAIELLKEMESSNLCNP-DVHTYQPLLRSC 411
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 81/190 (42%), Gaps = 9/190 (4%)
Query: 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173
VA+I+ G+ EEA I + L + G + + L+D+ CK ++ +
Sbjct: 158 VAKIMRRFAGAGEWEEA-VGIFDRLGEFGLEKNTESMNL--LLDTLCK---EKRVEQARV 211
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
L QL S + I G C+ + EA I+EM+ G P Y II
Sbjct: 212 VLLQL---KSHITPNAHTFNIFIHGWCKANRVEEALWTIQEMKGHGFRPCVISYTTIIRC 268
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
Y + + ++++ME++G+ +++ ++SS E + +MK SG
Sbjct: 269 YCQQFEFIKVYEMLSEMEANGSPPNSITYTTIMSSLNAQKEFEEALRVATRMKRSGCKPD 328
Query: 294 VRTYNSVLNS 303
YN ++++
Sbjct: 329 SLFYNCLIHT 338
>sp|Q9FGR7|PP426_ARATH Pentatricopeptide repeat-containing protein At5g50280,
chloroplastic OS=Arabidopsis thaliana GN=EMB1006 PE=2
SV=1
Length = 723
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 91/203 (44%), Gaps = 13/203 (6%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILET-LSKLGSRERELVLFYCNLIDSFCKH 162
E +W+ + ++ +G +EEA L+++T + K G R +V Y L+D++ K
Sbjct: 337 EKGVKWSQDVFGGLVKSFCDEGLKEEA--LVIQTEMEKKGIRSNTIV--YNTLMDAYNKS 392
Query: 163 DSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221
+ + + + ++ + S++ Y ++ QP E L+ EM GLE
Sbjct: 393 NHIEEVEGLFTEMRDKGLKPSAATY------NILMDAYARRMQPDIVETLLREMEDLGLE 446
Query: 222 PSGFEYKCIIYGYGRLGLLEDMER-IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280
P+ Y C+I YGR + DM +M+ G + + ++ +Y +
Sbjct: 447 PNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKPSSHSYTALIHAYSVSGWHEKAYA 506
Query: 281 WLQKMKDSGIPFSVRTYNSVLNS 303
++M GI SV TY SVL++
Sbjct: 507 SFEEMCKEGIKPSVETYTSVLDA 529
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 10/193 (5%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174
A +I L K G+ + I E +S+ G + + V + L+ SFC K
Sbjct: 312 AILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDV--FGGLVKSFCDEGLKEEALVIQTE 369
Query: 175 LNQL-VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + + S++ VY +++ + E E L EMR KGL+PS Y ++
Sbjct: 370 MEKKGIRSNTIVY------NTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMDA 423
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL-WLQKMKDSGIPF 292
Y R + +E ++ +ME G + ++S+YG ++S M +MK G+
Sbjct: 424 YARRMQPDIVETLLREMEDLGLEPNVKSYTCLISAYGRTKKMSDMAADAFLRMKKVGLKP 483
Query: 293 SVRTYNSVLNSCS 305
S +Y +++++ S
Sbjct: 484 SSHSYTALIHAYS 496
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 61/126 (48%), Gaps = 1/126 (0%)
Query: 184 SVYVKRQALKSMISGLCEMGQ-PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED 242
+VY +I+ L + G+ E + E+M KG++ S + ++ + GL E+
Sbjct: 303 NVYPDNVTCAILITTLRKAGRSAKEVWEIFEKMSEKGVKWSQDVFGGLVKSFCDEGLKEE 362
Query: 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
I +ME G R +T+ N ++ +Y N + + +M+D G+ S TYN +++
Sbjct: 363 ALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHIEEVEGLFTEMRDKGLKPSAATYNILMD 422
Query: 303 SCSTIM 308
+ + M
Sbjct: 423 AYARRM 428
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
S V + ++ C+ G EA + EM KG+ + Y ++ Y + +
Sbjct: 336 SEKGVKWSQDVFGGLVKSFCDEGLKEEALVIQTEMEKKGIRSNTIVYNTLMDAYNKSNHI 395
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
E++E + +M G + N+++ +Y + + L++M+D G+ +V++Y +
Sbjct: 396 EEVEGLFTEMRDKGLKPSAATYNILMDAYARRMQPDIVETLLREMEDLGLEPNVKSYTCL 455
Query: 301 LNSCSTIMSMLQDLNSNDF 319
+++ M D+ ++ F
Sbjct: 456 ISAYGRTKKM-SDMAADAF 473
Score = 40.0 bits (92), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 22/112 (19%), Positives = 51/112 (45%)
Query: 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248
R +++ G + G EA +++ E GL+PS Y ++ Y R G + +++
Sbjct: 555 RITYNTLLDGFAKQGLYIEARDVVSEFSKMGLQPSVMTYNMLMNAYARGGQDAKLPQLLK 614
Query: 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+M + + D++ + ++ ++ + R + + M SG R+Y +
Sbjct: 615 EMAALNLKPDSITYSTMIYAFVRVRDFKRAFFYHKMMVKSGQVPDPRSYEKL 666
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 56/116 (48%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC G+P+EA+ ++ M G P+ + Y ++ G+ + GL E+ ++ +M+ G
Sbjct: 403 LVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTG 462
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ C ++++ + ++ KM GI Y+S++ I SM
Sbjct: 463 CSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSM 518
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 114/269 (42%), Gaps = 44/269 (16%)
Query: 103 EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162
EE + N + + +I+ L K+G+ EEA +L +++ G + ++ Y L+D C+
Sbjct: 354 EERGYHLNQHIYSVLISGLFKEGKAEEAMSL-WRKMAEKGCKPN--IVVYSVLVDGLCRE 410
Query: 163 DSKRGFDDTYARL-------NQLVNSS------------SSVYVKRQALKS--------- 194
+ R+ N SS +V V ++ K+
Sbjct: 411 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCY 470
Query: 195 --MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM-- 250
+I GLC +G+ EA + +M G++P Y II G +G ++ ++ ++M
Sbjct: 471 SVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLC 530
Query: 251 -ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309
E ++ D V N++L ++SR V L M D G V T N+ LN+ S
Sbjct: 531 QEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLS---- 586
Query: 310 MLQDLNSNDFPLSILE--LTEVLNEEEVS 336
+ NS D S LE + +L + VS
Sbjct: 587 --EKSNSCDKGRSFLEELVVRLLKRQRVS 613
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 2/111 (1%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GLC+ + EA L++EM+ +G PS Y +I G + G L + ++V+ M
Sbjct: 227 TLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLK 286
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNS 303
G + V N ++ +L + V L++M S IP V TY +++N
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDV-TYGTLING 336
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 77/190 (40%), Gaps = 27/190 (14%)
Query: 132 TLILETLSKLGSRERELVLF--------------YCNLIDSFCKHDSKRGFDDTYARLNQ 177
L+++ L KL +R + +F YC L+D CK + D+ L++
Sbjct: 191 NLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEER---IDEAVLLLDE 247
Query: 178 L----VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
+ + S +Y +I GLC+ G L++ M +KG P+ Y +I+G
Sbjct: 248 MQSEGCSPSPVIY------NVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G L+ ++ +M S + V +++ + V L M++ G +
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN 361
Query: 294 VRTYNSVLNS 303
Y+ +++
Sbjct: 362 QHIYSVLISG 371
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 13/181 (7%)
Query: 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--S 183
+R + L+L+ + G ++ Y LID CK R+ +LV++
Sbjct: 236 ERIDEAVLLLDEMQSEGCSPSPVI--YNVLIDGLCKKGD-------LTRVTKLVDNMFLK 286
Query: 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243
++I GLC G+ +A +L+E M P+ Y +I G + D
Sbjct: 287 GCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDA 346
Query: 244 ERIVNQMESDGTRVDTVCSNMVLSS-YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
R+++ ME G ++ ++++S + + M LW +KM + G ++ Y+ +++
Sbjct: 347 VRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLW-RKMAEKGCKPNIVVYSVLVD 405
Query: 303 S 303
Sbjct: 406 G 406
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 12/192 (6%)
Query: 119 AFLD---KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175
A LD K G+ EA+ L E + S + ++V Y +LI+ C HD D+
Sbjct: 265 ALLDAFVKNGKVLEAKELFEEMVRM--SIDPDIVT-YSSLINGLCLHDR---IDEANQMF 318
Query: 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235
+ +V S + ++I+G C+ + + L EM +GL + Y +I G+
Sbjct: 319 DLMV--SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF 376
Query: 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295
+ G ++ + +QM+ G D N++L D+ EL + ++ + M+ + +
Sbjct: 377 QAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIV 436
Query: 296 TYNSVLNS-CST 306
TY +V+ C T
Sbjct: 437 TYTTVIRGMCKT 448
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I G+C+ G+ EA +L + +KGL+P Y ++ G GLL ++E + +M+ +
Sbjct: 440 TVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQE 499
Query: 254 G 254
G
Sbjct: 500 G 500
Score = 37.0 bits (84), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 79/183 (43%), Gaps = 30/183 (16%)
Query: 149 VLFYCNLIDSFCK----HDSKRGFDD-----------TY-ARLNQLVNSSS--------S 184
++ Y +IDS CK +D+ F + TY A +N L NSS S
Sbjct: 190 IVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLS 249
Query: 185 VYVKRQALKSMIS------GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238
+K++ ++I+ + G+ EA+ L EEM ++P Y +I G
Sbjct: 250 DMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHD 309
Query: 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298
+++ ++ + M S G D V N +++ + + + ++M G+ + TYN
Sbjct: 310 RIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYN 369
Query: 299 SVL 301
+++
Sbjct: 370 TLI 372
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 7/170 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
IL + KLG + + +L++ FC+ + D + ++++V + A
Sbjct: 142 ILGKMLKLGYEPDRVTIG--SLVNGFCRRNR---VSDAVSLVDKMVEIGYKPDI--VAYN 194
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ + ++A + +E+ KG+ P+ Y ++ G D R+++ M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + + +L ++ + ++ ++M I + TY+S++N
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 13/135 (9%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ G+ +A + E+M+ + ++ Y +I G + G +E+ + + G
Sbjct: 406 LLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKG 465
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG------------IPFSVRTYNSVLN 302
+ D V ++S L + KMK G I S +L
Sbjct: 466 LKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKML- 524
Query: 303 SCSTIMSMLQDLNSN 317
SC S+L+D+ S
Sbjct: 525 SCGYAPSLLKDIKSG 539
>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300,
mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2
SV=1
Length = 637
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 10/201 (4%)
Query: 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKH 162
E Q N ++ + K GQ L +E L K+ R +L + Y +ID CKH
Sbjct: 221 EYGCQPNAVTYGPVLNVMCKSGQ----TALAMELLRKMEERNIKLDAVKYSIIIDGLCKH 276
Query: 163 DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222
S D+ + N++ + +I G C G+ + L+ +M + + P
Sbjct: 277 GS---LDNAFNLFNEM--EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331
Query: 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282
+ + +I + + G L + E + +M G DT+ ++ + N L + +
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391
Query: 283 QKMKDSGIPFSVRTYNSVLNS 303
M G ++RT+N ++N
Sbjct: 392 DLMVSKGCDPNIRTFNILING 412
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/156 (22%), Positives = 72/156 (46%), Gaps = 7/156 (4%)
Query: 149 VLFYCNLIDSFCKHDSKRGFDDTYARL-NQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
V+ + LIDSF K R ++ + + ++ + + Y S+I G C+ +
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYT------SLIDGFCKENHLDK 386
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A +++ M KG +P+ + +I GY + ++D + +M G DTV N ++
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ + +L+ Q+M +P ++ TY +L+
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 91/228 (39%), Gaps = 35/228 (15%)
Query: 108 QWNPKLV--AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS- 164
+ NP +V + +I K+G+ EAE L E + + + + + Y +LID FCK +
Sbjct: 328 KINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD---TITYTSLIDGFCKENHL 384
Query: 165 -----------KRGFDDTYARLNQLVN------------------SSSSVYVKRQALKSM 195
+G D N L+N S V ++
Sbjct: 385 DKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTL 444
Query: 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255
I G CE+G+ + A+ L +EM + + P+ YK ++ G G E I ++E
Sbjct: 445 IQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKM 504
Query: 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+D N+++ + +++ + G+ V+TYN ++
Sbjct: 505 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGG 552
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 53/108 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I G+C + +A +L + +KG++P Y +I G + G L + E + +ME DG
Sbjct: 514 IIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDG 573
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D N+++ ++ + ++ V ++++K G T V++
Sbjct: 574 HAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621
Score = 37.0 bits (84), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI GLC+ G EAE L +M G P G+ Y +I + G +++ +++ G
Sbjct: 549 MIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608
Query: 255 TRVDTVCSNMVLSSYGD 271
VD MV+ D
Sbjct: 609 FSVDASTIKMVIDMLSD 625
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 79/168 (47%), Gaps = 7/168 (4%)
Query: 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193
I++ + + G R ++ Y LID FC RG D A + + + + R
Sbjct: 402 IVDGMIRRGLRPDKIT--YTTLIDGFC-----RGGDVETALEIRKEMDQNGIELDRVGFS 454
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ G+C+ G+ +AE + EM G++P Y ++ + + G + +++ +M+SD
Sbjct: 455 ALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSD 514
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
G V N++L+ ++ + L M + G+ TYN++L
Sbjct: 515 GHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 11/165 (6%)
Query: 149 VLFYCNLIDSFCKHD---SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205
++ Y L++ FCK+ + R D R + + ++I G C G
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIR--------RGLRPDKITYTTLIDGFCRGGDV 431
Query: 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265
A + +EM G+E + ++ G + G + D ER + +M G + D V M+
Sbjct: 432 ETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMM 491
Query: 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310
+ ++ + L++M+ G SV TYN +LN + M
Sbjct: 492 MDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQM 536
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 78/179 (43%), Gaps = 30/179 (16%)
Query: 155 LIDSFCKH----DSKRGFDDTYAR--------LNQLVNSSSSV-------YVKRQALKS- 194
L++ FCK D+++ FD+ R N L+N V +K Q KS
Sbjct: 246 LMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSR 305
Query: 195 ----------MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244
+I+ LC+ + A L +EM +GL P+ + +I+G+ R G ++ M+
Sbjct: 306 TRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMK 365
Query: 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+M S G + D V N +++ + + +L + M G+ TY ++++
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDG 424
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 54/108 (50%), Gaps = 3/108 (2%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M+ C+ G L++EM+ G PS Y ++ G +LG +++ + +++ M + G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNIG 550
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302
D + N +L + H S+ ++QK + GI + +Y S++N
Sbjct: 551 VVPDDITYNTLLEGHHRHANSSKR--YIQK-PEIGIVADLASYKSIVN 595
>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080,
mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2
SV=1
Length = 614
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 88/193 (45%), Gaps = 10/193 (5%)
Query: 108 QWNPKLVA--EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165
+ NP +V +I K+G+ EAE L E + + S + +V Y +LI+ FC HD
Sbjct: 305 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR--SIDPNIVT-YNSLINGFCMHDR- 360
Query: 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225
D+ +V S ++I+G C+ + + L +M +GL +
Sbjct: 361 --LDEAQQIFTLMV--SKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416
Query: 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285
Y +I+G+ + ++ + + QM SDG + + N +L + +L + ++ + +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476
Query: 286 KDSGIPFSVRTYN 298
+ S + + TYN
Sbjct: 477 QKSKMEPDIYTYN 489
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
+++ GL + + EA L+E M VKG +P Y +I G + G + ++N+ME
Sbjct: 175 TLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKG 234
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304
D V + V+ S + + + +M + GI V TY+S++ SC
Sbjct: 235 KIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLI-SC 284
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I LC+ +A NL EM KG+ P F Y +I G D R+++ M
Sbjct: 245 TVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLER 304
Query: 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ V N ++ ++ +L +M I ++ TYNS++N
Sbjct: 305 KINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLING 354
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 6/113 (5%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253
++I+GLC+ G+P A NL+ +M +E Y +I + ++D + +M++
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNK 269
Query: 254 GTRVDTVCSNMVLS---SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G R D + ++S +YG ++ SR+ L M + I +V T+NS++++
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRL---LSDMLERKINPNVVTFNSLIDA 319
Score = 40.8 bits (94), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228
D+ Q+V S V+ +++ GLC+ G+ +A + E ++ +EP + Y
Sbjct: 432 DNAQMVFKQMV--SDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489
Query: 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288
+ G + G +ED + + G + D + N ++S + KMK+
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549
Query: 289 GIPFSVRTYNSVLNS 303
G TYN+++ +
Sbjct: 550 GPLPDSGTYNTLIRA 564
Score = 39.7 bits (91), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 50/106 (47%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
M G+C+ G+ + +L + +KG++P Y +I G+ + GL E+ + +M+ DG
Sbjct: 491 MSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDG 550
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
D+ N ++ ++ + + +++M+ TY V
Sbjct: 551 PLPDSGTYNTLIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLV 596
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 51/112 (45%)
Query: 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251
L S+++G C + EA L+++M G +P + +++G + + +V +M
Sbjct: 138 LNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMV 197
Query: 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
G + D V V++ E + L KM+ I V Y++V++S
Sbjct: 198 VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDS 249
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 85/196 (43%), Gaps = 22/196 (11%)
Query: 115 AEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKH----DSKRG 167
+ +I+ L G+ +A L+ + L ER++ V+ + +LID+F K ++++
Sbjct: 279 SSLISCLCNYGRWSDASRLLSDML------ERKINPNVVTFNSLIDAFAKEGKLIEAEKL 332
Query: 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227
FD+ R S+ S+I+G C + EA+ + M K P Y
Sbjct: 333 FDEMIQR---------SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287
+I G+ + + D + M G +TV ++ + ++ + ++M
Sbjct: 384 NTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 288 SGIPFSVRTYNSVLNS 303
G+ ++ TYN++L+
Sbjct: 444 DGVHPNIMTYNTLLDG 459
Score = 38.5 bits (88), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
MI+ LC Q A ++ +M G PS ++ G+ + + +V+QM G
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+ DTV ++ HN+ S V +++M G + TY +V+N
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVING 214
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 70/162 (43%), Gaps = 13/162 (8%)
Query: 146 RELVLFYCNLIDSFCKH----DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201
R V Y +LI C + D+ R D L + +N + + S+I +
Sbjct: 272 RPDVFTYSSLISCLCNYGRWSDASRLLSDM---LERKINPNVVTF------NSLIDAFAK 322
Query: 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261
G+ EAE L +EM + ++P+ Y +I G+ L++ ++I M S D V
Sbjct: 323 EGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVT 382
Query: 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
N +++ + ++ + + M G+ + TY ++++
Sbjct: 383 YNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHG 424
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 152 YCNLIDSFCKHDSKRGF-DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAEN 210
Y +ID CK+ GF D+ LN++ S + ++I+G C++G+ A+
Sbjct: 406 YTGMIDGLCKN----GFLDEAVVLLNEM--SKDGIDPDIVTYSALINGFCKVGRFKTAKE 459
Query: 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270
++ + GL P+G Y +IY R+G L++ RI M +G D N++++S
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLC 519
Query: 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
+++ +++ M GI + +++ ++N
Sbjct: 520 KAGKVAEAEEFMRCMTSDGILPNTVSFDCLING 552
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 11/106 (10%)
Query: 152 YCNLIDSFCKH---DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEA 208
Y L+D CK+ D RGF Y R+ + + V V R MI GLC+ G EA
Sbjct: 371 YGVLLDGLCKNAEFDLARGF---YMRMKR-----NGVCVGRITYTGMIDGLCKNGFLDEA 422
Query: 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
L+ EM G++P Y +I G+ ++G + + IV ++ G
Sbjct: 423 VVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVG 468
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 91/214 (42%), Gaps = 19/214 (8%)
Query: 93 LAFPLYMRITEESWFQWNPKLVAEI-----IAFLDKQGQREEAETLILETLSKLGSRERE 147
LA YMR+ + N V I I L K G +EA ++L +SK G
Sbjct: 386 LARGFYMRM------KRNGVCVGRITYTGMIDGLCKNGFLDEA-VVLLNEMSKDGIDPD- 437
Query: 148 LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207
++ Y LI+ FCK + + R+ ++ S + + ++I C MG E
Sbjct: 438 -IVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGI-----IYSTLIYNCCRMGCLKE 491
Query: 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267
A + E M ++G F + ++ + G + + E + M SDG +TV + +++
Sbjct: 492 AIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLIN 551
Query: 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301
YG+ E + +M G + TY S+L
Sbjct: 552 GYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLL 585
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 55/111 (49%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+I+ LC G ++ L+++M G P+ Y +++ Y + G + +++ M+S G
Sbjct: 199 LINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKG 258
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
D NM++ N +++ L L+ M+ I + TYN+++N S
Sbjct: 259 VDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFS 309
Score = 42.0 bits (97), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%)
Query: 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL 240
+S + + +I+G G+ +A ++ +EM G P+ F Y ++ G + G L
Sbjct: 535 TSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHL 594
Query: 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300
+ E+ + + + VDTV N +L++ L++ V +M I TY S+
Sbjct: 595 REAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSL 654
Query: 301 LNS 303
++
Sbjct: 655 ISG 657
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 1/113 (0%)
Query: 194 SMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252
S+ISGLC G+ A +E +G + P+ Y C + G + G + QM++
Sbjct: 653 SLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN 712
Query: 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305
G D V +N ++ Y ++ + L +M + ++ TYN +L+ S
Sbjct: 713 LGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYS 765
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/237 (19%), Positives = 97/237 (40%), Gaps = 17/237 (7%)
Query: 69 PQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE 128
P N L ++L + + + S L M+ E+S + ++ + K+G+ +
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYL-----MQKMEKSGYAPTIVTYNTVLHWYCKKGRFK 245
Query: 129 EAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDS-KRGFDDTYARLNQLVNSSSSVY 186
A +E L + S+ + V Y LI C+ + +G+ ++++ + Y
Sbjct: 246 AA----IELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTY 301
Query: 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246
++I+G G+ A L+ EM GL P+ + +I G+ G ++ ++
Sbjct: 302 ------NTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKM 355
Query: 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303
ME+ G V ++L + E + +MK +G+ TY +++
Sbjct: 356 FYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDG 412
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 5/115 (4%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
++ GLC+ + A M+ G+ Y +I G + G L++ ++N+M DG
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 433
Query: 255 TRVDTVCSNMVLSSY---GDHNELSRMV--LWLQKMKDSGIPFSVRTYNSVLNSC 304
D V + +++ + G +V ++ + +GI +S YN C
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488
Score = 33.5 bits (75), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 174 RLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233
RL L + SVY L S++ G+ + ++EM + + P + +I
Sbjct: 147 RLMGLYGFNPSVYTCNAILGSVVKS----GEDVSVWSFLKEMLKRKICPDVATFNILINV 202
Query: 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293
G E ++ +ME G V N VL Y + L MK G+
Sbjct: 203 LCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDAD 262
Query: 294 VRTYNSVLN 302
V TYN +++
Sbjct: 263 VCTYNMLIH 271
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 1/115 (0%)
Query: 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254
+ G+ + GQ E+M G P +I GY R+G +E ++ +M +
Sbjct: 690 FVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQN 749
Query: 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFSVRTYNSVLNSCSTIM 308
+ N++L Y ++S L + + +GI P + ++ VL C + M
Sbjct: 750 GGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNM 804
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,538,138
Number of Sequences: 539616
Number of extensions: 5714532
Number of successful extensions: 19065
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 127
Number of HSP's that attempted gapping in prelim test: 17044
Number of HSP's gapped (non-prelim): 1761
length of query: 425
length of database: 191,569,459
effective HSP length: 120
effective length of query: 305
effective length of database: 126,815,539
effective search space: 38678739395
effective search space used: 38678739395
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)