Query 042756
Match_columns 425
No_of_seqs 226 out of 2770
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 1.3E-52 2.9E-57 436.3 35.2 374 31-423 381-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.4E-51 3E-56 428.8 36.8 376 31-423 448-875 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 2.3E-48 4.9E-53 409.4 32.9 362 34-422 166-616 (857)
4 PLN03081 pentatricopeptide (PP 100.0 9.3E-48 2E-52 395.8 29.8 368 29-422 96-489 (697)
5 PLN03081 pentatricopeptide (PP 100.0 1.3E-46 2.8E-51 387.4 30.8 366 27-422 125-521 (697)
6 PLN03077 Protein ECB2; Provisi 100.0 3.6E-46 7.7E-51 392.7 33.0 363 29-422 60-516 (857)
7 PRK11788 tetratricopeptide rep 99.8 8.1E-17 1.8E-21 155.4 30.2 305 30-396 45-354 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 5.8E-16 1.3E-20 164.9 31.4 362 33-422 512-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 99.7 3.8E-15 8.2E-20 158.6 33.4 334 29-383 440-798 (899)
10 PRK11788 tetratricopeptide rep 99.7 1.7E-15 3.8E-20 146.2 24.3 289 90-422 50-349 (389)
11 KOG4422 Uncharacterized conser 99.6 4.6E-13 1E-17 121.7 21.9 323 27-423 122-461 (625)
12 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-14 2.4E-19 95.8 6.1 50 257-306 1-50 (50)
13 PF13041 PPR_2: PPR repeat fam 99.5 2.1E-14 4.6E-19 94.5 6.5 50 187-236 1-50 (50)
14 PRK15174 Vi polysaccharide exp 99.4 1.5E-10 3.2E-15 118.4 29.8 315 25-383 47-380 (656)
15 TIGR00990 3a0801s09 mitochondr 99.4 1.2E-09 2.7E-14 111.6 33.4 337 29-383 136-570 (615)
16 KOG4626 O-linked N-acetylgluco 99.4 8.3E-11 1.8E-15 111.8 20.1 337 32-397 128-491 (966)
17 PRK15174 Vi polysaccharide exp 99.3 2.8E-09 6.1E-14 109.1 30.4 269 28-313 84-371 (656)
18 KOG4422 Uncharacterized conser 99.3 1.1E-08 2.5E-13 93.6 29.1 321 52-383 205-589 (625)
19 PRK11447 cellulose synthase su 99.3 6.6E-09 1.4E-13 113.5 32.3 336 30-383 279-665 (1157)
20 PRK11447 cellulose synthase su 99.2 5.7E-09 1.2E-13 114.0 29.3 333 30-383 361-739 (1157)
21 PRK10049 pgaA outer membrane p 99.2 3.8E-08 8.2E-13 102.9 32.0 132 27-165 22-166 (765)
22 TIGR00990 3a0801s09 mitochondr 99.2 6.6E-08 1.4E-12 99.0 32.7 292 57-383 130-495 (615)
23 KOG4318 Bicoid mRNA stability 99.1 1.3E-09 2.8E-14 107.7 14.6 207 97-309 12-286 (1088)
24 PRK10747 putative protoheme IX 99.1 2.1E-07 4.5E-12 89.9 29.5 271 28-313 92-380 (398)
25 PF13429 TPR_15: Tetratricopep 99.1 8.6E-10 1.9E-14 101.4 11.9 247 31-314 19-268 (280)
26 PRK09782 bacteriophage N4 rece 99.1 2.8E-07 6.1E-12 97.4 30.2 273 20-313 376-662 (987)
27 KOG4626 O-linked N-acetylgluco 99.0 8E-07 1.7E-11 85.3 29.1 251 33-303 231-499 (966)
28 PF12854 PPR_1: PPR repeat 99.0 3.1E-10 6.6E-15 67.3 4.0 33 253-285 1-33 (34)
29 PRK10049 pgaA outer membrane p 99.0 2.7E-06 5.8E-11 89.2 34.3 105 30-136 59-175 (765)
30 TIGR00540 hemY_coli hemY prote 99.0 1.3E-06 2.8E-11 84.8 28.8 273 28-313 92-389 (409)
31 TIGR02521 type_IV_pilW type IV 99.0 3.9E-07 8.4E-12 80.6 22.9 193 109-313 29-222 (234)
32 PF12854 PPR_1: PPR repeat 99.0 9.2E-10 2E-14 65.3 3.9 34 218-251 1-34 (34)
33 COG2956 Predicted N-acetylgluc 98.9 3.5E-06 7.7E-11 75.0 26.9 264 28-303 43-324 (389)
34 KOG1840 Kinesin light chain [C 98.9 1E-06 2.2E-11 85.6 26.0 258 28-302 207-499 (508)
35 TIGR02521 type_IV_pilW type IV 98.9 8.1E-07 1.8E-11 78.5 23.8 202 53-287 30-231 (234)
36 KOG1126 DNA-binding cell divis 98.9 1.5E-07 3.3E-12 90.9 18.4 268 91-383 335-619 (638)
37 PRK14574 hmsH outer membrane p 98.9 2.8E-06 6.2E-11 88.1 28.7 367 28-421 42-510 (822)
38 KOG4318 Bicoid mRNA stability 98.9 9.5E-08 2.1E-12 94.9 16.5 227 41-274 11-286 (1088)
39 PRK10747 putative protoheme IX 98.8 4E-06 8.7E-11 81.0 27.3 238 31-286 129-388 (398)
40 PF13429 TPR_15: Tetratricopep 98.8 5.5E-08 1.2E-12 89.4 13.7 220 32-286 56-275 (280)
41 PRK09782 bacteriophage N4 rece 98.8 4.9E-06 1.1E-10 88.1 29.4 245 30-294 448-710 (987)
42 PRK12370 invasion protein regu 98.8 3.7E-06 8.1E-11 84.8 27.2 242 35-304 276-519 (553)
43 PRK14574 hmsH outer membrane p 98.8 1.2E-05 2.5E-10 83.6 30.3 341 34-383 116-512 (822)
44 KOG1155 Anaphase-promoting com 98.8 2.4E-06 5.2E-11 79.5 21.6 165 110-287 329-494 (559)
45 KOG1840 Kinesin light chain [C 98.8 6.1E-06 1.3E-10 80.3 25.4 199 116-314 246-470 (508)
46 PRK12370 invasion protein regu 98.8 4.3E-06 9.4E-11 84.3 25.0 204 89-308 275-489 (553)
47 COG2956 Predicted N-acetylgluc 98.7 7.6E-06 1.7E-10 72.9 22.5 212 69-287 50-277 (389)
48 COG3071 HemY Uncharacterized e 98.7 3.5E-05 7.5E-10 70.7 26.8 286 12-313 74-380 (400)
49 KOG1126 DNA-binding cell divis 98.7 2.6E-06 5.6E-11 82.7 20.2 266 28-313 327-610 (638)
50 TIGR00540 hemY_coli hemY prote 98.7 3.5E-06 7.5E-11 81.8 20.8 192 90-295 99-297 (409)
51 KOG2076 RNA polymerase III tra 98.6 0.00028 6.1E-09 71.1 31.7 276 31-313 150-468 (895)
52 TIGR00756 PPR pentatricopeptid 98.6 1E-07 2.2E-12 57.1 4.3 34 260-293 1-34 (35)
53 TIGR00756 PPR pentatricopeptid 98.5 1.9E-07 4.1E-12 55.9 4.2 33 191-223 2-34 (35)
54 KOG1129 TPR repeat-containing 98.5 8.8E-06 1.9E-10 72.6 15.8 228 30-294 233-462 (478)
55 KOG2003 TPR repeat-containing 98.5 0.00013 2.8E-09 67.9 23.2 265 28-308 427-708 (840)
56 PF13812 PPR_3: Pentatricopept 98.5 2.9E-07 6.4E-12 54.7 4.2 33 260-292 2-34 (34)
57 KOG2003 TPR repeat-containing 98.5 4E-05 8.7E-10 71.3 19.8 334 28-384 284-689 (840)
58 COG3063 PilF Tfp pilus assembl 98.4 0.00012 2.6E-09 62.6 21.1 185 113-309 37-222 (250)
59 KOG1155 Anaphase-promoting com 98.4 0.00013 2.8E-09 68.3 23.0 194 107-313 258-485 (559)
60 PRK11189 lipoprotein NlpI; Pro 98.4 0.00042 9.2E-09 64.1 26.8 230 34-303 40-279 (296)
61 PF13812 PPR_3: Pentatricopept 98.4 5E-07 1.1E-11 53.7 4.2 32 191-222 3-34 (34)
62 COG3071 HemY Uncharacterized e 98.4 0.00057 1.2E-08 62.9 25.4 277 89-383 98-389 (400)
63 PF08579 RPM2: Mitochondrial r 98.3 8.4E-06 1.8E-10 61.4 10.5 81 226-306 27-116 (120)
64 PF12569 NARP1: NMDA receptor- 98.3 0.00076 1.6E-08 66.6 26.6 249 32-292 16-295 (517)
65 PF01535 PPR: PPR repeat; Int 98.3 1.1E-06 2.4E-11 50.9 3.4 30 261-290 2-31 (31)
66 PRK11189 lipoprotein NlpI; Pro 98.3 0.00017 3.8E-09 66.7 19.7 93 190-286 99-192 (296)
67 PF10037 MRP-S27: Mitochondria 98.3 1.6E-05 3.4E-10 75.7 12.9 137 133-272 50-186 (429)
68 KOG0547 Translocase of outer m 98.2 0.00014 3.1E-09 68.5 18.4 234 32-305 338-578 (606)
69 PF08579 RPM2: Mitochondrial r 98.2 1.1E-05 2.5E-10 60.7 8.8 82 191-272 27-117 (120)
70 KOG1128 Uncharacterized conser 98.2 7.3E-05 1.6E-09 73.6 16.2 249 7-306 384-635 (777)
71 COG3063 PilF Tfp pilus assembl 98.2 0.0014 3E-08 56.2 21.8 163 112-284 70-232 (250)
72 PF01535 PPR: PPR repeat; Int 98.2 2.2E-06 4.7E-11 49.6 3.3 30 191-220 2-31 (31)
73 PF10037 MRP-S27: Mitochondria 98.1 6.1E-05 1.3E-09 71.8 13.0 120 188-307 65-186 (429)
74 KOG1173 Anaphase-promoting com 98.1 0.0018 3.8E-08 62.4 22.5 247 31-313 255-508 (611)
75 TIGR03302 OM_YfiO outer membra 98.0 0.0018 3.8E-08 57.7 20.7 174 109-288 31-232 (235)
76 PF12569 NARP1: NMDA receptor- 98.0 0.011 2.4E-07 58.5 27.1 271 31-314 49-368 (517)
77 PF06239 ECSIT: Evolutionarily 98.0 6.2E-05 1.3E-09 63.9 9.8 91 223-313 46-157 (228)
78 KOG2002 TPR-containing nuclear 98.0 0.0034 7.3E-08 64.2 22.9 244 52-314 450-736 (1018)
79 cd05804 StaR_like StaR_like; a 97.9 0.0053 1.2E-07 58.3 23.5 233 29-289 52-294 (355)
80 PF04733 Coatomer_E: Coatomer 97.9 0.00019 4.2E-09 65.7 12.5 82 204-287 182-264 (290)
81 KOG2076 RNA polymerase III tra 97.9 0.011 2.4E-07 60.1 25.1 276 34-314 187-503 (895)
82 KOG1129 TPR repeat-containing 97.9 0.00065 1.4E-08 61.0 14.8 228 115-383 227-457 (478)
83 KOG0495 HAT repeat protein [RN 97.9 0.033 7.2E-07 54.9 31.6 330 36-386 422-784 (913)
84 KOG0547 Translocase of outer m 97.9 0.0039 8.5E-08 59.1 20.4 222 123-383 338-565 (606)
85 cd05804 StaR_like StaR_like; a 97.9 0.011 2.3E-07 56.2 24.5 160 119-288 51-215 (355)
86 KOG2002 TPR-containing nuclear 97.9 0.0076 1.6E-07 61.7 23.6 247 35-291 511-801 (1018)
87 KOG1173 Anaphase-promoting com 97.8 0.0092 2E-07 57.6 22.6 263 90-403 259-530 (611)
88 PF06239 ECSIT: Evolutionarily 97.8 0.00024 5.3E-09 60.4 10.8 88 188-275 46-154 (228)
89 KOG1070 rRNA processing protei 97.8 0.007 1.5E-07 64.2 22.6 210 53-294 1457-1669(1710)
90 KOG0985 Vesicle coat protein c 97.8 0.019 4.1E-07 59.2 24.7 144 151-313 1106-1268(1666)
91 KOG2047 mRNA splicing factor [ 97.8 0.048 1E-06 53.7 28.3 344 35-399 153-588 (835)
92 KOG1174 Anaphase-promoting com 97.7 0.037 8.1E-07 51.6 23.1 263 33-314 209-491 (564)
93 KOG2053 Mitochondrial inherita 97.7 0.055 1.2E-06 55.2 25.9 240 27-306 16-269 (932)
94 KOG1915 Cell cycle control pro 97.6 0.056 1.2E-06 51.4 23.5 184 90-288 88-273 (677)
95 KOG1174 Anaphase-promoting com 97.6 0.057 1.2E-06 50.5 23.1 267 96-383 217-499 (564)
96 KOG3785 Uncharacterized conser 97.6 0.058 1.3E-06 49.4 22.8 48 265-313 399-447 (557)
97 PRK15359 type III secretion sy 97.6 0.0067 1.5E-07 49.5 15.7 104 191-298 26-129 (144)
98 PRK10370 formate-dependent nit 97.6 0.012 2.6E-07 50.8 17.7 163 117-305 22-188 (198)
99 TIGR02552 LcrH_SycD type III s 97.5 0.0038 8.3E-08 50.1 13.8 110 190-303 18-127 (135)
100 KOG1070 rRNA processing protei 97.5 0.053 1.1E-06 58.0 24.4 220 26-281 1464-1693(1710)
101 PF04733 Coatomer_E: Coatomer 97.5 0.0071 1.5E-07 55.5 16.4 195 41-253 53-265 (290)
102 TIGR03302 OM_YfiO outer membra 97.5 0.029 6.3E-07 49.8 20.2 137 112-253 71-232 (235)
103 COG5010 TadD Flp pilus assembl 97.5 0.039 8.4E-07 48.4 19.5 129 110-249 99-227 (257)
104 KOG1156 N-terminal acetyltrans 97.5 0.12 2.6E-06 51.1 24.3 227 27-268 14-261 (700)
105 PLN02789 farnesyltranstransfer 97.4 0.08 1.7E-06 49.3 22.7 204 90-306 52-267 (320)
106 PRK15179 Vi polysaccharide bio 97.4 0.034 7.5E-07 57.2 21.9 146 107-266 82-229 (694)
107 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0079 1.7E-07 57.3 15.5 121 116-251 174-295 (395)
108 PF09976 TPR_21: Tetratricopep 97.3 0.0095 2E-07 48.6 13.8 129 151-285 14-144 (145)
109 KOG0495 HAT repeat protein [RN 97.3 0.19 4.2E-06 49.8 28.1 332 30-383 526-879 (913)
110 cd00189 TPR Tetratricopeptide 97.3 0.004 8.7E-08 45.4 10.9 96 191-288 2-97 (100)
111 PRK15179 Vi polysaccharide bio 97.3 0.013 2.8E-07 60.3 17.4 189 61-273 75-269 (694)
112 PRK04841 transcriptional regul 97.3 0.29 6.2E-06 53.0 28.3 170 118-287 459-640 (903)
113 COG5010 TadD Flp pilus assembl 97.3 0.036 7.8E-07 48.6 16.6 154 117-283 72-226 (257)
114 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.014 3.1E-07 45.3 13.4 98 191-288 4-105 (119)
115 KOG3785 Uncharacterized conser 97.2 0.16 3.5E-06 46.6 21.2 180 116-310 290-477 (557)
116 PRK15359 type III secretion sy 97.2 0.0075 1.6E-07 49.2 11.7 94 114-217 27-120 (144)
117 PF09295 ChAPs: ChAPs (Chs5p-A 97.2 0.018 3.8E-07 55.0 15.6 93 191-286 202-295 (395)
118 KOG1128 Uncharacterized conser 97.2 0.057 1.2E-06 54.0 19.2 221 107-383 394-615 (777)
119 PRK10370 formate-dependent nit 97.2 0.084 1.8E-06 45.6 18.7 117 90-218 54-173 (198)
120 KOG3081 Vesicle coat complex C 97.2 0.058 1.3E-06 47.5 17.1 63 191-254 171-237 (299)
121 PF14938 SNAP: Soluble NSF att 97.1 0.14 2.9E-06 47.1 20.6 172 113-286 77-264 (282)
122 PRK04841 transcriptional regul 97.1 0.3 6.6E-06 52.8 26.6 265 31-313 463-750 (903)
123 PF09976 TPR_21: Tetratricopep 97.1 0.034 7.3E-07 45.4 14.9 131 112-249 13-143 (145)
124 KOG1915 Cell cycle control pro 97.1 0.27 5.9E-06 46.9 27.6 336 33-383 154-535 (677)
125 PRK14720 transcript cleavage f 97.1 0.11 2.4E-06 54.5 21.4 30 53-82 30-59 (906)
126 TIGR02552 LcrH_SycD type III s 97.1 0.021 4.4E-07 45.8 13.0 63 190-253 52-114 (135)
127 COG4783 Putative Zn-dependent 97.0 0.32 7E-06 46.6 22.4 90 192-284 343-433 (484)
128 PF14938 SNAP: Soluble NSF att 97.0 0.14 3.1E-06 46.9 19.7 114 191-305 116-246 (282)
129 PF12921 ATP13: Mitochondrial 96.9 0.013 2.8E-07 46.3 10.1 78 191-268 4-97 (126)
130 PF12895 Apc3: Anaphase-promot 96.9 0.0019 4.2E-08 47.2 5.0 81 202-284 2-83 (84)
131 PF12921 ATP13: Mitochondrial 96.9 0.04 8.6E-07 43.6 12.6 103 53-164 1-103 (126)
132 PRK14720 transcript cleavage f 96.8 0.14 3.1E-06 53.7 19.5 159 107-288 27-198 (906)
133 KOG3060 Uncharacterized conser 96.8 0.3 6.4E-06 42.9 20.1 156 125-288 26-183 (289)
134 COG4783 Putative Zn-dependent 96.8 0.32 6.8E-06 46.7 19.9 166 113-308 309-476 (484)
135 KOG4340 Uncharacterized conser 96.8 0.35 7.7E-06 43.4 22.1 154 90-251 159-337 (459)
136 CHL00033 ycf3 photosystem I as 96.8 0.031 6.7E-07 46.9 12.1 94 191-285 37-139 (168)
137 PF05843 Suf: Suppressor of fo 96.7 0.039 8.4E-07 50.6 13.3 145 151-304 3-150 (280)
138 KOG3617 WD40 and TPR repeat-co 96.7 0.47 1E-05 48.4 20.9 43 34-81 742-784 (1416)
139 PRK02603 photosystem I assembl 96.7 0.076 1.7E-06 44.7 13.9 84 190-274 36-121 (172)
140 TIGR02795 tol_pal_ybgF tol-pal 96.7 0.12 2.6E-06 39.9 14.2 102 113-218 4-105 (119)
141 PLN03088 SGT1, suppressor of 96.7 0.056 1.2E-06 51.4 14.2 104 197-304 10-113 (356)
142 KOG1914 mRNA cleavage and poly 96.6 0.31 6.6E-06 47.4 18.4 119 191-312 368-490 (656)
143 KOG2047 mRNA splicing factor [ 96.5 1 2.2E-05 44.9 25.1 184 33-234 88-291 (835)
144 PF14559 TPR_19: Tetratricopep 96.5 0.012 2.6E-07 40.7 6.5 62 236-300 3-64 (68)
145 KOG1914 mRNA cleavage and poly 96.5 0.35 7.5E-06 47.0 17.8 204 90-304 308-520 (656)
146 PRK10866 outer membrane biogen 96.4 0.6 1.3E-05 41.7 18.5 57 230-286 181-239 (243)
147 cd00189 TPR Tetratricopeptide 96.4 0.033 7.2E-07 40.3 9.1 94 114-217 3-96 (100)
148 KOG4340 Uncharacterized conser 96.4 0.43 9.4E-06 42.9 16.7 181 90-290 25-209 (459)
149 KOG3941 Intermediate in Toll s 96.4 0.029 6.3E-07 49.7 9.2 70 239-308 87-172 (406)
150 PF05843 Suf: Suppressor of fo 96.3 0.061 1.3E-06 49.3 11.6 146 112-269 2-150 (280)
151 KOG1125 TPR repeat-containing 96.3 0.52 1.1E-05 46.1 17.9 238 31-280 296-563 (579)
152 KOG0985 Vesicle coat protein c 96.3 1.5 3.2E-05 46.1 21.6 52 110-166 1132-1183(1666)
153 PLN02789 farnesyltranstransfer 96.2 1 2.3E-05 42.0 23.3 168 90-272 87-268 (320)
154 PRK10153 DNA-binding transcrip 96.2 0.27 5.8E-06 49.1 16.4 72 223-298 419-490 (517)
155 PF14559 TPR_19: Tetratricopep 96.2 0.022 4.8E-07 39.4 6.4 63 200-266 2-65 (68)
156 KOG3616 Selective LIM binding 96.2 0.59 1.3E-05 47.1 17.9 166 195-382 738-909 (1636)
157 PRK10153 DNA-binding transcrip 96.1 0.52 1.1E-05 47.1 17.9 124 187-314 335-473 (517)
158 PF03704 BTAD: Bacterial trans 96.1 0.043 9.4E-07 44.7 8.6 70 226-296 64-138 (146)
159 PRK02603 photosystem I assembl 96.0 0.32 6.9E-06 40.9 14.0 96 110-212 34-129 (172)
160 PF04840 Vps16_C: Vps16, C-ter 96.0 1.4 3E-05 41.1 22.6 57 187-249 206-262 (319)
161 PF12688 TPR_5: Tetratrico pep 96.0 0.38 8.3E-06 37.6 13.0 105 195-305 7-117 (120)
162 CHL00033 ycf3 photosystem I as 95.9 0.15 3.3E-06 42.6 11.4 98 110-214 34-138 (168)
163 PF13432 TPR_16: Tetratricopep 95.9 0.043 9.4E-07 37.5 6.7 55 232-287 5-59 (65)
164 KOG1127 TPR repeat-containing 95.9 1.3 2.9E-05 46.3 19.3 217 50-285 471-697 (1238)
165 KOG3941 Intermediate in Toll s 95.8 0.066 1.4E-06 47.5 8.9 88 188-275 66-174 (406)
166 PLN03088 SGT1, suppressor of 95.8 0.1 2.2E-06 49.6 11.1 100 119-230 10-109 (356)
167 KOG1125 TPR repeat-containing 95.7 1.1 2.3E-05 44.0 17.1 154 122-287 296-492 (579)
168 KOG1156 N-terminal acetyltrans 95.6 2.7 5.9E-05 42.0 27.0 258 27-290 150-470 (700)
169 PF12895 Apc3: Anaphase-promot 95.6 0.045 9.7E-07 39.8 6.3 81 124-214 2-83 (84)
170 PF03704 BTAD: Bacterial trans 95.6 0.09 2E-06 42.8 8.6 71 191-262 64-139 (146)
171 PF04840 Vps16_C: Vps16, C-ter 95.5 2.1 4.5E-05 39.9 22.3 103 191-313 179-281 (319)
172 KOG3081 Vesicle coat complex C 95.5 1.7 3.6E-05 38.7 18.9 147 90-253 123-271 (299)
173 KOG3616 Selective LIM binding 95.5 0.81 1.7E-05 46.2 15.8 129 90-249 747-875 (1636)
174 PRK10803 tol-pal system protei 95.3 0.34 7.4E-06 43.8 12.0 102 190-295 144-251 (263)
175 PF13424 TPR_12: Tetratricopep 95.3 0.085 1.8E-06 37.6 6.6 59 191-249 7-71 (78)
176 PF13414 TPR_11: TPR repeat; P 95.3 0.12 2.6E-06 35.7 7.2 60 225-285 4-64 (69)
177 PF13432 TPR_16: Tetratricopep 95.2 0.1 2.2E-06 35.7 6.6 56 196-253 4-60 (65)
178 KOG4162 Predicted calmodulin-b 95.2 4.3 9.3E-05 41.4 26.7 177 98-286 311-540 (799)
179 PF13170 DUF4003: Protein of u 95.1 1.1 2.4E-05 41.2 14.8 68 90-158 77-150 (297)
180 KOG0624 dsRNA-activated protei 95.0 2.8 6.2E-05 38.7 19.8 184 90-288 170-370 (504)
181 PRK15363 pathogenicity island 95.0 0.7 1.5E-05 37.8 11.6 93 192-287 38-131 (157)
182 KOG3617 WD40 and TPR repeat-co 94.8 1.1 2.4E-05 46.0 14.5 132 110-281 911-1057(1416)
183 PF13414 TPR_11: TPR repeat; P 94.8 0.18 3.8E-06 34.9 6.9 63 189-252 3-66 (69)
184 smart00299 CLH Clathrin heavy 94.7 1.8 3.9E-05 34.8 14.5 124 117-271 13-137 (140)
185 PRK10866 outer membrane biogen 94.7 3 6.5E-05 37.2 20.6 160 90-252 47-240 (243)
186 KOG0553 TPR repeat-containing 94.6 0.21 4.6E-06 44.9 8.5 101 121-233 91-191 (304)
187 KOG2376 Signal recognition par 94.4 5.8 0.00013 39.3 22.6 151 151-307 341-505 (652)
188 PF13424 TPR_12: Tetratricopep 94.4 0.27 5.9E-06 34.9 7.3 60 111-170 5-67 (78)
189 PF13371 TPR_9: Tetratricopept 94.4 0.34 7.4E-06 33.8 7.7 56 232-288 3-58 (73)
190 KOG4162 Predicted calmodulin-b 94.3 7 0.00015 40.0 27.2 340 26-383 329-782 (799)
191 PRK15363 pathogenicity island 94.3 0.77 1.7E-05 37.5 10.4 92 117-218 41-132 (157)
192 PLN03098 LPA1 LOW PSII ACCUMUL 94.1 1.2 2.6E-05 42.9 12.7 63 189-253 75-141 (453)
193 KOG2376 Signal recognition par 94.1 6.8 0.00015 38.9 24.3 141 205-369 357-510 (652)
194 PF09205 DUF1955: Domain of un 94.0 2.4 5.2E-05 33.5 13.5 138 123-290 14-151 (161)
195 COG5107 RNA14 Pre-mRNA 3'-end 93.9 4.5 9.8E-05 38.8 15.7 144 151-304 399-545 (660)
196 KOG2041 WD40 repeat protein [G 93.7 7.5 0.00016 39.4 17.5 41 35-80 678-718 (1189)
197 PF13525 YfiO: Outer membrane 93.7 4.3 9.3E-05 35.1 19.0 157 117-288 11-170 (203)
198 KOG0553 TPR repeat-containing 93.7 1 2.2E-05 40.6 10.7 101 199-305 91-193 (304)
199 COG4235 Cytochrome c biogenesi 93.5 5 0.00011 36.4 14.9 128 168-303 138-269 (287)
200 KOG3060 Uncharacterized conser 93.2 5.7 0.00012 35.2 20.5 30 188-217 153-182 (289)
201 PF04053 Coatomer_WDAD: Coatom 93.1 4.2 9E-05 39.8 15.0 156 28-215 269-428 (443)
202 PF10300 DUF3808: Protein of u 92.9 8.2 0.00018 38.2 17.1 166 115-286 192-374 (468)
203 PLN03098 LPA1 LOW PSII ACCUMUL 92.7 0.99 2.1E-05 43.4 9.8 65 222-288 73-141 (453)
204 PF13170 DUF4003: Protein of u 92.6 8.3 0.00018 35.6 15.5 134 127-265 78-223 (297)
205 KOG1538 Uncharacterized conser 92.6 13 0.00027 37.6 17.5 88 191-289 749-847 (1081)
206 PF07079 DUF1347: Protein of u 92.6 3.3 7.1E-05 39.7 12.8 140 123-271 18-179 (549)
207 COG3629 DnrI DNA-binding trans 92.5 1.7 3.7E-05 39.3 10.6 78 225-303 154-236 (280)
208 PRK10803 tol-pal system protei 92.5 4.1 8.8E-05 36.9 13.1 100 151-253 145-246 (263)
209 PF13371 TPR_9: Tetratricopept 92.3 1.1 2.3E-05 31.2 7.6 57 197-254 3-59 (73)
210 PF10602 RPN7: 26S proteasome 92.1 2.4 5.2E-05 35.8 10.6 97 190-286 37-140 (177)
211 PF13512 TPR_18: Tetratricopep 91.8 1.9 4.2E-05 34.6 9.1 86 112-204 12-97 (142)
212 PF12688 TPR_5: Tetratrico pep 91.8 5.1 0.00011 31.3 13.7 111 117-235 7-117 (120)
213 COG5107 RNA14 Pre-mRNA 3'-end 91.7 1.9 4.1E-05 41.2 10.1 117 190-310 398-518 (660)
214 KOG2280 Vacuolar assembly/sort 91.5 7.6 0.00016 39.7 14.5 52 31-82 518-574 (829)
215 KOG2796 Uncharacterized conser 91.4 7.2 0.00016 34.8 12.7 235 54-306 69-331 (366)
216 PF13525 YfiO: Outer membrane 91.2 9.2 0.0002 33.0 20.2 166 90-279 20-198 (203)
217 smart00299 CLH Clathrin heavy 91.2 6.7 0.00014 31.4 14.9 125 153-305 11-136 (140)
218 KOG1127 TPR repeat-containing 91.0 6.9 0.00015 41.4 14.0 180 92-286 475-657 (1238)
219 PF13281 DUF4071: Domain of un 91.0 15 0.00032 35.0 20.8 180 100-288 132-334 (374)
220 PF13762 MNE1: Mitochondrial s 89.9 5.7 0.00012 32.1 10.1 50 190-239 80-130 (145)
221 PF10602 RPN7: 26S proteasome 89.9 4.9 0.00011 33.9 10.4 102 112-216 37-140 (177)
222 COG3629 DnrI DNA-binding trans 89.7 4.3 9.3E-05 36.8 10.3 78 191-269 155-237 (280)
223 COG1729 Uncharacterized protei 89.6 4.8 0.0001 36.0 10.3 98 152-253 145-244 (262)
224 PF13512 TPR_18: Tetratricopep 89.4 5.2 0.00011 32.2 9.5 76 199-274 20-97 (142)
225 KOG2796 Uncharacterized conser 89.3 16 0.00034 32.7 16.4 98 191-288 179-281 (366)
226 KOG4570 Uncharacterized conser 88.8 3.4 7.5E-05 37.6 8.9 96 153-253 68-164 (418)
227 PF04053 Coatomer_WDAD: Coatom 88.6 7.5 0.00016 38.1 11.9 133 111-284 295-427 (443)
228 PF13176 TPR_7: Tetratricopept 88.0 1.3 2.7E-05 26.1 4.0 26 261-286 1-26 (36)
229 PF07079 DUF1347: Protein of u 87.9 16 0.00035 35.3 13.0 145 160-308 17-181 (549)
230 COG4105 ComL DNA uptake lipopr 87.6 20 0.00043 31.9 18.7 84 111-201 35-118 (254)
231 PF13176 TPR_7: Tetratricopept 87.2 1.4 3E-05 26.0 3.9 24 192-215 2-25 (36)
232 COG4235 Cytochrome c biogenesi 87.0 16 0.00035 33.2 12.1 102 110-218 155-256 (287)
233 PF00637 Clathrin: Region in C 86.6 0.33 7.1E-06 39.3 1.2 85 194-285 12-96 (143)
234 KOG0548 Molecular co-chaperone 86.4 35 0.00077 33.6 17.2 165 114-287 227-420 (539)
235 PF13281 DUF4071: Domain of un 86.4 31 0.00067 32.8 20.8 133 117-253 185-334 (374)
236 PF13762 MNE1: Mitochondrial s 86.2 16 0.00035 29.5 10.8 79 227-306 42-127 (145)
237 PF09205 DUF1955: Domain of un 86.1 15 0.00033 29.1 13.1 119 168-313 18-139 (161)
238 PF08631 SPO22: Meiosis protei 85.4 29 0.00063 31.6 25.0 230 31-284 4-271 (278)
239 KOG1538 Uncharacterized conser 85.1 45 0.00099 33.9 14.8 62 192-255 776-848 (1081)
240 PRK15331 chaperone protein Sic 84.7 11 0.00024 31.1 9.1 87 199-287 47-133 (165)
241 PF13428 TPR_14: Tetratricopep 84.7 3.3 7.3E-05 25.5 4.9 28 261-288 3-30 (44)
242 KOG0276 Vesicle coat complex C 84.5 5.6 0.00012 39.6 8.4 150 29-214 595-746 (794)
243 KOG2114 Vacuolar assembly/sort 84.4 24 0.00052 36.7 13.1 114 117-250 403-516 (933)
244 KOG2053 Mitochondrial inherita 84.3 59 0.0013 34.3 23.0 197 30-255 53-257 (932)
245 KOG2610 Uncharacterized conser 84.2 23 0.0005 32.9 11.6 156 35-216 118-274 (491)
246 KOG1585 Protein required for f 83.9 30 0.00066 30.7 12.5 156 125-306 72-240 (308)
247 COG1729 Uncharacterized protei 83.6 33 0.00072 30.8 12.6 96 190-288 143-244 (262)
248 PF13929 mRNA_stabil: mRNA sta 83.2 34 0.00073 31.1 12.3 136 168-304 144-288 (292)
249 KOG4570 Uncharacterized conser 83.1 11 0.00023 34.6 9.0 95 191-289 66-165 (418)
250 PF13428 TPR_14: Tetratricopep 83.0 3.9 8.5E-05 25.2 4.7 28 113-140 3-30 (44)
251 COG4649 Uncharacterized protei 83.0 27 0.00058 29.3 13.1 126 90-222 73-200 (221)
252 PF13374 TPR_10: Tetratricopep 82.9 3.2 7E-05 24.8 4.3 28 259-286 2-29 (42)
253 COG2909 MalT ATP-dependent tra 82.6 69 0.0015 33.8 19.1 97 121-218 425-526 (894)
254 COG3118 Thioredoxin domain-con 82.5 28 0.00061 31.7 11.5 122 157-287 142-264 (304)
255 KOG0543 FKBP-type peptidyl-pro 81.8 26 0.00056 33.3 11.4 93 191-286 259-353 (397)
256 KOG2114 Vacuolar assembly/sort 81.4 16 0.00034 38.0 10.5 140 121-286 378-517 (933)
257 cd00923 Cyt_c_Oxidase_Va Cytoc 81.3 11 0.00024 27.9 7.0 33 219-251 37-69 (103)
258 PF10300 DUF3808: Protein of u 81.3 60 0.0013 32.2 18.3 191 34-252 171-375 (468)
259 PF13374 TPR_10: Tetratricopep 81.2 4.3 9.3E-05 24.2 4.4 29 111-139 2-30 (42)
260 PRK15331 chaperone protein Sic 81.0 14 0.0003 30.6 8.3 89 119-217 45-133 (165)
261 KOG0543 FKBP-type peptidyl-pro 80.7 49 0.0011 31.5 12.8 80 224-306 257-336 (397)
262 KOG1941 Acetylcholine receptor 80.4 52 0.0011 31.0 15.8 235 30-284 16-271 (518)
263 COG4700 Uncharacterized protei 80.3 35 0.00077 28.9 16.9 128 109-245 87-214 (251)
264 KOG4555 TPR repeat-containing 79.9 28 0.00062 27.6 10.2 94 120-219 52-145 (175)
265 PF13929 mRNA_stabil: mRNA sta 79.9 48 0.001 30.2 13.4 119 192-313 134-257 (292)
266 PF07163 Pex26: Pex26 protein; 79.8 14 0.00031 33.2 8.5 89 116-212 88-181 (309)
267 PRK11906 transcriptional regul 79.7 64 0.0014 31.5 16.2 165 115-286 257-434 (458)
268 PF02284 COX5A: Cytochrome c o 79.1 25 0.00054 26.5 8.7 35 217-251 38-72 (108)
269 COG4700 Uncharacterized protei 79.0 39 0.00085 28.7 20.8 126 153-287 93-225 (251)
270 PF00515 TPR_1: Tetratricopept 77.4 5.5 0.00012 22.6 3.8 27 191-217 3-29 (34)
271 KOG2041 WD40 repeat protein [G 77.3 24 0.00052 36.0 10.1 87 191-286 811-905 (1189)
272 PF00515 TPR_1: Tetratricopept 77.2 7.2 0.00016 22.1 4.3 28 260-287 2-29 (34)
273 KOG4555 TPR repeat-containing 77.2 35 0.00076 27.1 11.3 90 198-289 52-145 (175)
274 PF02284 COX5A: Cytochrome c o 76.4 30 0.00066 26.0 8.9 78 226-304 10-89 (108)
275 PF09613 HrpB1_HrpK: Bacterial 76.3 42 0.00092 27.6 12.1 90 200-295 21-113 (160)
276 KOG1130 Predicted G-alpha GTPa 75.8 65 0.0014 30.9 11.9 136 151-286 197-342 (639)
277 PF04184 ST7: ST7 protein; In 75.7 33 0.00071 33.7 10.3 67 90-158 274-340 (539)
278 COG2909 MalT ATP-dependent tra 73.7 1.3E+02 0.0028 32.0 19.4 241 26-284 421-684 (894)
279 PF08631 SPO22: Meiosis protei 73.4 73 0.0016 29.0 22.9 142 113-259 38-192 (278)
280 COG4455 ImpE Protein of avirul 71.2 51 0.0011 28.8 9.4 81 231-312 8-90 (273)
281 COG3898 Uncharacterized membra 70.8 1E+02 0.0022 29.5 21.2 215 64-294 75-298 (531)
282 COG4455 ImpE Protein of avirul 70.3 17 0.00038 31.5 6.4 77 115-198 5-81 (273)
283 PF11848 DUF3368: Domain of un 69.5 19 0.00041 22.8 5.1 31 271-301 14-44 (48)
284 PF07035 Mic1: Colon cancer-as 69.2 66 0.0014 26.8 15.9 28 42-69 16-44 (167)
285 PF11848 DUF3368: Domain of un 68.7 18 0.0004 22.9 4.9 31 236-266 14-44 (48)
286 PF04184 ST7: ST7 protein; In 68.4 1.3E+02 0.0028 29.8 14.1 56 230-285 265-321 (539)
287 TIGR02508 type_III_yscG type I 68.2 49 0.0011 24.9 8.0 87 205-299 21-107 (115)
288 COG4105 ComL DNA uptake lipopr 67.8 91 0.002 27.9 21.7 173 90-287 49-232 (254)
289 COG5108 RPO41 Mitochondrial DN 67.7 30 0.00065 35.2 8.2 75 194-271 33-115 (1117)
290 COG3947 Response regulator con 67.6 1E+02 0.0022 28.3 13.3 71 191-262 281-356 (361)
291 PRK10564 maltose regulon perip 67.2 11 0.00024 34.4 4.9 29 263-291 261-289 (303)
292 KOG0276 Vesicle coat complex C 67.2 1.4E+02 0.0031 30.3 12.5 132 113-285 616-747 (794)
293 PF11838 ERAP1_C: ERAP1-like C 67.1 1.1E+02 0.0023 28.4 20.9 125 153-284 133-262 (324)
294 PF07719 TPR_2: Tetratricopept 66.9 17 0.00037 20.3 4.3 28 260-287 2-29 (34)
295 PF11663 Toxin_YhaV: Toxin wit 66.7 6.1 0.00013 31.3 2.8 27 239-267 110-136 (140)
296 KOG1464 COP9 signalosome, subu 66.0 1E+02 0.0022 27.8 14.0 161 126-286 42-218 (440)
297 PF07721 TPR_4: Tetratricopept 65.4 11 0.00023 20.2 2.9 21 263-283 5-25 (26)
298 COG3947 Response regulator con 64.6 47 0.001 30.3 8.2 73 226-299 281-358 (361)
299 PF11207 DUF2989: Protein of u 64.0 68 0.0015 27.6 8.8 82 121-209 117-198 (203)
300 PF13181 TPR_8: Tetratricopept 64.0 21 0.00046 20.0 4.3 27 261-287 3-29 (34)
301 PRK15180 Vi polysaccharide bio 63.3 54 0.0012 32.1 8.8 117 162-286 302-418 (831)
302 PF11846 DUF3366: Domain of un 62.7 42 0.00091 28.5 7.7 32 256-287 141-172 (193)
303 KOG2610 Uncharacterized conser 62.4 1.4E+02 0.003 28.0 16.9 151 123-284 115-272 (491)
304 PF10366 Vps39_1: Vacuolar sor 60.9 49 0.0011 25.2 6.9 27 261-287 41-67 (108)
305 PF07035 Mic1: Colon cancer-as 60.8 98 0.0021 25.8 15.5 129 101-252 20-148 (167)
306 KOG1585 Protein required for f 60.4 1.3E+02 0.0027 27.0 17.6 223 36-282 9-250 (308)
307 PF10475 DUF2450: Protein of u 60.4 1.3E+02 0.0028 27.7 10.9 84 191-279 129-217 (291)
308 PF00637 Clathrin: Region in C 60.1 6.2 0.00013 31.7 2.0 85 117-216 13-97 (143)
309 PF13431 TPR_17: Tetratricopep 59.9 9.9 0.00021 22.0 2.3 22 258-279 12-33 (34)
310 PF10579 Rapsyn_N: Rapsyn N-te 59.8 28 0.0006 24.8 4.8 46 201-246 18-65 (80)
311 PF13174 TPR_6: Tetratricopept 59.1 9.2 0.0002 21.3 2.1 21 267-287 8-28 (33)
312 TIGR03504 FimV_Cterm FimV C-te 57.2 21 0.00047 22.2 3.5 25 265-289 5-29 (44)
313 PF11846 DUF3366: Domain of un 57.2 50 0.0011 28.1 7.2 53 201-253 120-173 (193)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 57.1 80 0.0017 23.6 9.0 72 232-304 13-86 (103)
315 KOG4648 Uncharacterized conser 57.1 35 0.00077 31.8 6.2 77 199-285 107-184 (536)
316 PRK10564 maltose regulon perip 56.7 21 0.00046 32.6 4.8 47 185-231 252-299 (303)
317 PF07163 Pex26: Pex26 protein; 56.2 1.5E+02 0.0033 27.0 9.8 88 155-247 89-181 (309)
318 TIGR03504 FimV_Cterm FimV C-te 55.6 22 0.00049 22.1 3.4 25 230-254 5-29 (44)
319 cd08819 CARD_MDA5_2 Caspase ac 55.2 80 0.0017 23.0 6.9 62 94-165 21-82 (88)
320 PF08311 Mad3_BUB1_I: Mad3/BUB 54.6 1E+02 0.0023 24.2 10.8 43 93-135 81-123 (126)
321 PF11207 DUF2989: Protein of u 54.3 1.4E+02 0.0031 25.7 10.1 80 198-279 116-198 (203)
322 KOG0550 Molecular chaperone (D 54.0 2.1E+02 0.0047 27.6 12.2 162 199-377 259-436 (486)
323 KOG4567 GTPase-activating prot 53.7 80 0.0017 29.1 7.8 58 209-271 263-320 (370)
324 PF14689 SPOB_a: Sensor_kinase 52.6 52 0.0011 22.1 5.2 25 262-286 26-50 (62)
325 TIGR03581 EF_0839 conserved hy 52.0 55 0.0012 28.3 6.2 83 168-250 137-234 (236)
326 KOG2280 Vacuolar assembly/sort 51.8 3.1E+02 0.0066 28.8 19.3 107 33-140 450-575 (829)
327 KOG1130 Predicted G-alpha GTPa 51.8 86 0.0019 30.2 8.0 140 112-252 196-343 (639)
328 PF11663 Toxin_YhaV: Toxin wit 51.6 18 0.00039 28.7 3.1 33 200-234 106-138 (140)
329 KOG0548 Molecular co-chaperone 51.6 2.6E+02 0.0057 27.9 23.0 231 35-306 239-471 (539)
330 TIGR02561 HrpB1_HrpK type III 51.3 1.3E+02 0.0029 24.5 10.2 49 202-254 23-74 (153)
331 PF02847 MA3: MA3 domain; Int 51.0 80 0.0017 23.9 6.8 22 194-215 7-28 (113)
332 PF10366 Vps39_1: Vacuolar sor 50.3 1.1E+02 0.0024 23.3 8.6 27 191-217 41-67 (108)
333 PF09613 HrpB1_HrpK: Bacterial 50.0 1.5E+02 0.0032 24.5 9.4 68 231-304 17-87 (160)
334 COG5159 RPN6 26S proteasome re 49.7 2.1E+02 0.0045 26.2 10.1 131 118-250 10-151 (421)
335 cd00280 TRFH Telomeric Repeat 49.6 1.6E+02 0.0035 25.0 12.4 25 155-179 19-43 (200)
336 COG0457 NrfG FOG: TPR repeat [ 49.5 1.5E+02 0.0032 24.5 21.1 168 111-288 59-231 (291)
337 KOG4521 Nuclear pore complex, 47.7 4.4E+02 0.0095 29.3 15.9 130 112-248 984-1126(1480)
338 PF02607 B12-binding_2: B12 bi 47.2 85 0.0018 21.9 6.0 42 271-312 13-54 (79)
339 PF09477 Type_III_YscG: Bacter 47.0 1.3E+02 0.0028 23.0 8.1 86 204-297 21-106 (116)
340 PF02847 MA3: MA3 domain; Int 46.1 96 0.0021 23.5 6.6 66 228-295 6-73 (113)
341 KOG0624 dsRNA-activated protei 46.0 2.6E+02 0.0057 26.4 27.1 169 194-383 160-335 (504)
342 PHA02875 ankyrin repeat protei 46.0 2.2E+02 0.0048 27.4 10.6 17 196-212 72-88 (413)
343 cd08326 CARD_CASP9 Caspase act 44.7 80 0.0017 22.8 5.4 59 94-164 18-76 (84)
344 smart00028 TPR Tetratricopepti 44.5 38 0.00083 17.5 3.2 27 261-287 3-29 (34)
345 PF03745 DUF309: Domain of unk 44.3 95 0.0021 20.9 5.4 49 234-282 9-62 (62)
346 PF14689 SPOB_a: Sensor_kinase 44.0 38 0.00082 22.8 3.4 26 115-140 27-52 (62)
347 KOG4279 Serine/threonine prote 43.0 1.1E+02 0.0024 31.9 7.6 109 110-225 200-321 (1226)
348 COG2178 Predicted RNA-binding 42.8 1.5E+02 0.0032 25.4 7.3 96 191-287 31-149 (204)
349 PF10579 Rapsyn_N: Rapsyn N-te 42.4 1.3E+02 0.0027 21.6 6.3 44 123-167 18-61 (80)
350 COG5108 RPO41 Mitochondrial DN 42.3 1.5E+02 0.0032 30.5 8.4 83 116-201 33-115 (1117)
351 PF12926 MOZART2: Mitotic-spin 41.8 1.4E+02 0.0029 21.8 8.0 42 245-286 29-70 (88)
352 PF12793 SgrR_N: Sugar transpo 41.5 1.3E+02 0.0028 23.3 6.4 43 94-136 36-95 (115)
353 cd08332 CARD_CASP2 Caspase act 41.4 1.4E+02 0.003 21.9 7.0 59 94-164 22-80 (90)
354 KOG4077 Cytochrome c oxidase, 40.1 1.9E+02 0.0041 22.9 7.0 37 216-252 76-112 (149)
355 PF12926 MOZART2: Mitotic-spin 40.1 1.5E+02 0.0031 21.7 7.7 63 189-253 10-72 (88)
356 PHA02875 ankyrin repeat protei 39.1 1.8E+02 0.0039 28.0 8.8 52 193-248 36-89 (413)
357 KOG1586 Protein required for f 38.9 2.8E+02 0.0062 24.7 12.0 24 270-293 165-188 (288)
358 PRK09857 putative transposase; 38.6 2.2E+02 0.0048 26.2 8.6 66 227-293 209-274 (292)
359 PRK11639 zinc uptake transcrip 37.9 1.8E+02 0.0038 24.3 7.3 60 250-310 17-76 (169)
360 PF10963 DUF2765: Protein of u 37.6 1.5E+02 0.0033 21.4 5.8 34 50-83 12-45 (83)
361 PF11123 DNA_Packaging_2: DNA 37.4 1.5E+02 0.0031 20.9 5.7 37 31-67 8-44 (82)
362 KOG1550 Extracellular protein 36.5 4.8E+02 0.01 26.6 18.1 188 91-290 228-428 (552)
363 PF11817 Foie-gras_1: Foie gra 36.5 2.7E+02 0.0058 24.8 8.8 61 191-251 180-245 (247)
364 KOG3364 Membrane protein invol 35.4 1.7E+02 0.0037 23.5 6.2 64 154-218 37-100 (149)
365 PF09454 Vps23_core: Vps23 cor 34.5 1.5E+02 0.0033 20.2 5.7 51 255-306 4-54 (65)
366 PRK00423 tfb transcription ini 33.8 3.9E+02 0.0085 24.8 10.3 33 73-105 125-157 (310)
367 PRK14958 DNA polymerase III su 33.6 5.1E+02 0.011 26.1 12.2 77 215-294 191-280 (509)
368 PF08311 Mad3_BUB1_I: Mad3/BUB 33.5 2.4E+02 0.0051 22.1 9.7 42 207-248 81-123 (126)
369 KOG0890 Protein kinase of the 33.2 5.8E+02 0.013 30.8 12.0 112 117-243 1389-1502(2382)
370 KOG2297 Predicted translation 32.6 4.1E+02 0.0089 24.7 13.7 71 199-279 265-341 (412)
371 PRK08691 DNA polymerase III su 32.6 5.5E+02 0.012 27.0 11.0 73 218-293 194-279 (709)
372 PF13934 ELYS: Nuclear pore co 32.5 3.5E+02 0.0075 23.8 15.9 105 152-270 79-183 (226)
373 PF12862 Apc5: Anaphase-promot 32.4 1.8E+02 0.0038 21.3 5.8 21 197-217 49-69 (94)
374 smart00777 Mad3_BUB1_I Mad3/BU 32.4 2.5E+02 0.0054 22.1 9.9 44 128-173 80-123 (125)
375 PRK15180 Vi polysaccharide bio 31.4 3.3E+02 0.0071 27.0 8.5 87 159-252 333-419 (831)
376 KOG2063 Vacuolar assembly/sort 30.9 3.9E+02 0.0085 28.9 9.8 193 113-307 506-745 (877)
377 cd08819 CARD_MDA5_2 Caspase ac 30.9 2.1E+02 0.0046 20.9 7.2 65 208-278 21-85 (88)
378 smart00804 TAP_C C-terminal do 30.9 41 0.00089 22.8 1.9 23 202-224 38-61 (63)
379 COG3898 Uncharacterized membra 30.6 5E+02 0.011 25.1 24.5 251 33-303 97-371 (531)
380 KOG4077 Cytochrome c oxidase, 30.4 2.8E+02 0.006 22.0 10.1 46 97-143 71-116 (149)
381 PF06552 TOM20_plant: Plant sp 30.3 2.6E+02 0.0057 23.7 6.9 37 276-314 97-133 (186)
382 PF09454 Vps23_core: Vps23 cor 30.3 74 0.0016 21.7 3.1 33 187-219 6-38 (65)
383 KOG0687 26S proteasome regulat 30.2 4.7E+02 0.01 24.6 9.7 119 175-295 56-180 (393)
384 PF02607 B12-binding_2: B12 bi 29.3 1.2E+02 0.0026 21.1 4.4 34 202-235 14-47 (79)
385 COG0819 TenA Putative transcri 29.2 3.9E+02 0.0085 23.4 9.4 101 215-315 100-211 (218)
386 KOG2297 Predicted translation 29.2 4.1E+02 0.0089 24.7 8.3 20 191-210 323-342 (412)
387 PF12862 Apc5: Anaphase-promot 29.1 2.3E+02 0.005 20.7 8.2 41 266-306 48-89 (94)
388 cd08323 CARD_APAF1 Caspase act 29.1 2.2E+02 0.0047 20.7 5.6 59 94-164 16-74 (86)
389 PF12796 Ank_2: Ankyrin repeat 28.6 99 0.0022 21.9 3.9 55 230-293 29-86 (89)
390 cd07153 Fur_like Ferric uptake 28.6 1.7E+02 0.0038 22.1 5.5 43 196-238 7-49 (116)
391 PF14853 Fis1_TPR_C: Fis1 C-te 28.4 1.4E+02 0.003 19.4 4.0 32 196-229 8-39 (53)
392 COG2976 Uncharacterized protei 28.1 3.9E+02 0.0085 23.0 8.7 97 60-161 95-207 (207)
393 KOG3807 Predicted membrane pro 27.3 5.3E+02 0.011 24.2 11.6 49 90-138 290-338 (556)
394 PRK11639 zinc uptake transcrip 27.2 2.6E+02 0.0056 23.3 6.6 65 211-276 13-77 (169)
395 smart00386 HAT HAT (Half-A-TPR 27.2 1.1E+02 0.0024 16.3 3.9 28 35-62 2-29 (33)
396 TIGR02561 HrpB1_HrpK type III 27.0 3.5E+02 0.0076 22.1 12.1 67 235-306 21-88 (153)
397 KOG0403 Neoplastic transformat 26.5 5.4E+02 0.012 25.4 9.0 29 191-219 545-573 (645)
398 PF04090 RNA_pol_I_TF: RNA pol 26.1 3.8E+02 0.0082 23.1 7.4 64 224-287 41-104 (199)
399 KOG1920 IkappaB kinase complex 25.7 9.8E+02 0.021 26.8 25.8 110 29-139 686-820 (1265)
400 TIGR02508 type_III_yscG type I 25.7 1.8E+02 0.0039 22.0 4.5 33 185-219 66-98 (115)
401 COG2178 Predicted RNA-binding 25.6 4.3E+02 0.0094 22.7 8.5 41 28-68 37-81 (204)
402 KOG1550 Extracellular protein 25.3 7.3E+02 0.016 25.2 17.2 152 127-289 228-394 (552)
403 TIGR01503 MthylAspMut_E methyl 25.3 4.9E+02 0.011 25.7 8.6 46 90-139 69-114 (480)
404 PF06552 TOM20_plant: Plant sp 24.6 4.4E+02 0.0095 22.4 10.2 76 168-255 51-138 (186)
405 cd08810 CARD_BCL10 Caspase act 24.2 2.8E+02 0.0061 20.1 5.6 58 94-164 18-75 (84)
406 KOG1498 26S proteasome regulat 24.1 6.6E+02 0.014 24.3 16.3 183 109-302 50-256 (439)
407 COG0735 Fur Fe2+/Zn2+ uptake r 23.9 3.1E+02 0.0067 22.1 6.3 61 244-305 6-66 (145)
408 TIGR03581 EF_0839 conserved hy 23.8 2.3E+02 0.0049 24.7 5.5 83 204-286 136-235 (236)
409 PLN03025 replication factor C 23.7 5.9E+02 0.013 23.6 11.3 75 217-294 173-259 (319)
410 cd01041 Rubrerythrin Rubreryth 23.7 3.5E+02 0.0077 21.2 6.6 70 205-286 47-116 (134)
411 KOG3636 Uncharacterized conser 23.5 7.1E+02 0.015 24.4 14.1 89 217-306 176-272 (669)
412 cd07153 Fur_like Ferric uptake 23.3 1.9E+02 0.004 22.0 4.8 47 265-311 6-52 (116)
413 COG1466 HolA DNA polymerase II 22.5 6.4E+02 0.014 23.6 9.4 93 210-305 148-253 (334)
414 KOG1464 COP9 signalosome, subu 22.4 6E+02 0.013 23.2 15.2 193 90-285 42-258 (440)
415 PF14669 Asp_Glu_race_2: Putat 22.1 5.2E+02 0.011 22.3 15.6 84 191-284 109-206 (233)
416 KOG2066 Vacuolar assembly/sort 22.1 9.7E+02 0.021 25.5 18.7 42 22-63 452-493 (846)
417 PF01475 FUR: Ferric uptake re 21.8 2.2E+02 0.0047 21.9 4.9 45 193-237 11-55 (120)
418 PF04637 Herpes_pp85: Herpesvi 21.6 7.8E+02 0.017 24.7 9.5 115 24-138 66-192 (501)
419 COG5187 RPN7 26S proteasome re 21.5 6.5E+02 0.014 23.3 16.4 96 149-251 115-219 (412)
420 KOG2582 COP9 signalosome, subu 21.4 7.2E+02 0.016 23.7 12.0 140 123-289 195-346 (422)
421 PRK09462 fur ferric uptake reg 21.4 4.4E+02 0.0094 21.2 7.4 61 249-310 7-68 (148)
422 PRK11906 transcriptional regul 21.2 8.1E+02 0.018 24.2 16.7 114 90-214 319-432 (458)
423 cd08785 CARD_CARD9-like Caspas 21.1 3.3E+02 0.0073 19.8 5.7 54 94-159 18-74 (86)
424 PF14669 Asp_Glu_race_2: Putat 20.8 2.4E+02 0.0052 24.2 5.0 59 191-249 134-206 (233)
425 PF11838 ERAP1_C: ERAP1-like C 20.7 6.6E+02 0.014 23.0 20.1 153 117-285 135-305 (324)
426 PRK09857 putative transposase; 20.6 6.7E+02 0.014 23.1 9.7 96 159-258 179-274 (292)
427 PF11817 Foie-gras_1: Foie gra 20.5 6.1E+02 0.013 22.5 9.8 70 91-164 161-233 (247)
428 KOG1920 IkappaB kinase complex 20.5 1.2E+03 0.027 26.1 21.5 87 187-285 933-1025(1265)
429 PRK14951 DNA polymerase III su 20.5 9.7E+02 0.021 24.9 13.6 93 207-303 187-293 (618)
430 PF10345 Cohesin_load: Cohesin 20.4 9.5E+02 0.021 24.7 16.9 180 127-307 37-236 (608)
431 PF02259 FAT: FAT domain; Int 20.3 6.9E+02 0.015 23.1 20.1 66 222-287 144-212 (352)
432 PRK14963 DNA polymerase III su 20.2 8.9E+02 0.019 24.3 11.0 85 206-293 178-275 (504)
433 PF02184 HAT: HAT (Half-A-TPR) 20.0 1.4E+02 0.0029 17.2 2.4 22 205-228 3-24 (32)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-52 Score=436.32 Aligned_cols=374 Identities=11% Similarity=0.120 Sum_probs=328.0
Q ss_pred HHHhhHHHHHHHHHHhHHh--cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC----------CCchhhhHHHHH
Q 042756 31 LTARLTKQGQRFLSSLALA--VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT----------HPRLSSLAFPLY 98 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~--~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~----------~~~~~~~a~~lf 98 (425)
+..|++++|.++|+.|... ..++..+++.++.+|++.|....|+.++..|..++.. ..+.++.|.++|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf 460 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVL 460 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4557999999999999988 6788899999999999999999999888887542211 124678999999
Q ss_pred HHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 99 ~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
++|.+.+ +.||..+|+.||.+|++.|++++|.++|++|.+.+..+. ..+|+++|.+|++.|+ .+++++.+.+|
T Consensus 461 ~~M~~~G-l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd---vvTynaLI~gy~k~G~---~eeAl~lf~~M 533 (1060)
T PLN03218 461 RLVQEAG-LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN---VHTFGALIDGCARAGQ---VAKAFGAYGIM 533 (1060)
T ss_pred HHHHHcC-CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHCcC---HHHHHHHHHHH
Confidence 9999887 789999999999999999999999999999998766544 4589999999999999 66777777777
Q ss_pred hhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV--KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 179 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
...+ +.||..+||+||.+|++.|++++|.++|++|.. .|+.||..||+++|.+|++.|++++|.++|+.|.+.|+.
T Consensus 534 ~~~G--v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~ 611 (1060)
T PLN03218 534 RSKN--VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611 (1060)
T ss_pred HHcC--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 7666 789999999999999999999999999999986 678999999999999999999999999999999999999
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-------------cCCchhhH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN-------------SNDFPLSI 323 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~-------------~~~~~~~~ 323 (425)
|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|++.|+++.++. ...|+.++
T Consensus 612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI 691 (1060)
T PLN03218 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691 (1060)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888877742 34567778
Q ss_pred HHHHhhcchhhHHHHHH-HHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeecc
Q 042756 324 LELTEVLNEEEVSVVKE-LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGS 402 (425)
Q Consensus 324 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~ 402 (425)
..|++.+..+++..+++ +.+.+..||..+||+||.+|++.|++++| +++|++|.+ .|+.||..||++++
T Consensus 692 ~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA-----lelf~eM~~-----~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA-----LEVLSEMKR-----LGLCPNTITYSILL 761 (1060)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHH-----cCCCCCHHHHHHHH
Confidence 88888888777765554 44688999999999999999999999999 999999998 89999999999999
Q ss_pred ccccccccchHHHHHHHHHhh
Q 042756 403 GKHSTVRGESSVKAMVKKMMV 423 (425)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~ 423 (425)
.+|++.+..+...++.++|..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 999998888888888888764
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-51 Score=428.78 Aligned_cols=376 Identities=11% Similarity=0.126 Sum_probs=322.1
Q ss_pred HHHhhHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC--------------CchhhhHH
Q 042756 31 LTARLTKQGQRFLSSLALA-VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH--------------PRLSSLAF 95 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~--------------~~~~~~a~ 95 (425)
...|+++.|.++|+.|.+. +.||..+||.||++|++.|..+.|..+|.+|...+..+ .+.+++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 3445888899999999999 99999999999999999999999999999998765432 23578999
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 96 PLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 96 ~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
++|++|.+.+ +.||..+|+.||.+|++.|++++|.++|++|.+.+....|+ ..+|+++|.+|++.|+ ++++.+++
T Consensus 528 ~lf~~M~~~G-v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~---ldeA~elf 602 (1060)
T PLN03218 528 GAYGIMRSKN-VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ---VDRAKEVY 602 (1060)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC---HHHHHHHH
Confidence 9999999887 88999999999999999999999999999998743322333 4589999999999999 66777777
Q ss_pred HHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
.+|...+ +.|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|++.|++++|.++|++|.+.|+
T Consensus 603 ~~M~e~g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 603 QMIHEYN--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHcC--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7776665 77899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-------------cCCchhh
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN-------------SNDFPLS 322 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~-------------~~~~~~~ 322 (425)
.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++++. ..+|..+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888887743 2345566
Q ss_pred HHHHHhhcchhhHH-HHHHHHhCCCCcccceeeccccchhc----c-------------------cCcchhHHHHHHHHH
Q 042756 323 ILELTEVLNEEEVS-VVKELEDSSVLDEAMKWDSGETKLDL----H-------------------GMHLGSAYFIILQWM 378 (425)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~----~-------------------~~~~~a~~~~~~~~~ 378 (425)
+.++.+.+..+.+. .+.++.+.|+.||..+|+++|..|.+ . +..++| +.+|
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~A-----l~lf 835 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWA-----LMVY 835 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHH-----HHHH
Confidence 66777777766665 44555688999999999999865432 1 122456 8999
Q ss_pred HHHHhhccCCCCCCCCeeeeeeccccccccccchHHHHHHHHHhh
Q 042756 379 DEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMMV 423 (425)
Q Consensus 379 ~~m~~~~~~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~ 423 (425)
++|++ .|+.||..||++++.++++.++...+..|.++|.+
T Consensus 836 ~eM~~-----~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~ 875 (1060)
T PLN03218 836 RETIS-----AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI 875 (1060)
T ss_pred HHHHH-----CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc
Confidence 99999 99999999999999777778888899999988764
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.3e-48 Score=409.35 Aligned_cols=362 Identities=14% Similarity=0.117 Sum_probs=292.8
Q ss_pred hhHHHHHHHHHHhHHh-cCCCHHH-----------------------------------HHHHHHHHHhcCChHHHHHHH
Q 042756 34 RLTKQGQRFLSSLALA-VTRDSKA-----------------------------------ASRLISKFVASSPQFIALNAL 77 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~-~~~d~~~-----------------------------------~~~ll~~~~~~~~~~~a~~~~ 77 (425)
|.+++|.++|++|... +.||..| ||.||++|++.|+.+.|..+|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 3566777777777665 5565554 466677777778888888888
Q ss_pred HhhhCCCCC----------CCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchh
Q 042756 78 SHLLSPDTT----------HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERE 147 (425)
Q Consensus 78 ~~~l~~~~~----------~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~ 147 (425)
.+|..++.. ..+..++|+++|++|.+.+ +.||..||+.+|.+|++.|+++.|.+++..|.+.+..++
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d-- 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD-- 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc--
Confidence 887654332 2346788999999998877 789999999999999999999999999999988776554
Q ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 042756 148 LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227 (425)
Q Consensus 148 ~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 227 (425)
..+|++||.+|++.|+ ++++.+++.+|. .||..+||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 323 -~~~~n~Li~~y~k~g~---~~~A~~vf~~m~------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 323 -VSVCNSLIQMYLSLGS---WGEAEKVFSRME------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred -hHHHHHHHHHHHhcCC---HHHHHHHHhhCC------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 4489999999999999 566666666663 467779999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------------
Q 042756 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS------------------- 288 (425)
Q Consensus 228 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~------------------- 288 (425)
+++|.+|++.|+++.|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.+.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~ 472 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCF 472 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHH
Confidence 9999999999999999999998888888888777777777777777777766666665432
Q ss_pred -----------CCCCCHHHHHHHHHHHHHHHHHHHhhc-------------cCCchhhHHHHHhhcchhhHHHHHHHHhC
Q 042756 289 -----------GIPFSVRTYNSVLNSCSTIMSMLQDLN-------------SNDFPLSILELTEVLNEEEVSVVKELEDS 344 (425)
Q Consensus 289 -----------g~~pd~~t~~~ll~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (425)
++.||..||+++|.+|++.|.++.+.+ ...++.++..|.++|..+++..+++ .
T Consensus 473 eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~---~ 549 (857)
T PLN03077 473 EALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN---S 549 (857)
T ss_pred HHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH---h
Confidence 578999999999999999998887743 4456788889999998877765443 3
Q ss_pred CCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccccccchHHHHHHHHHh
Q 042756 345 SVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKMM 422 (425)
Q Consensus 345 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~~ 422 (425)
. .||..+||+||.+|+++|+.++| +++|++|.+ .|+.||.+||++++.+|++.+..+....+.++|.
T Consensus 550 ~-~~d~~s~n~lI~~~~~~G~~~~A-----~~lf~~M~~-----~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 550 H-EKDVVSWNILLTGYVAHGKGSMA-----VELFNRMVE-----SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred c-CCChhhHHHHHHHHHHcCCHHHH-----HHHHHHHHH-----cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 3 79999999999999999999999 999999998 9999999999999999998766666555555554
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.3e-48 Score=395.84 Aligned_cols=368 Identities=13% Similarity=0.114 Sum_probs=273.1
Q ss_pred HHHHHhhHHHHHHHHHHhHHh--cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC--------------Cchhh
Q 042756 29 QCLTARLTKQGQRFLSSLALA--VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH--------------PRLSS 92 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~--~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~--------------~~~~~ 92 (425)
.....|++++|.++|+.|... ..||..+|+.++.+|++.+..+.+..++..|...+..+ .+.++
T Consensus 96 ~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~ 175 (697)
T PLN03081 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLI 175 (697)
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHH
Confidence 334567899999999999876 68999999999999999998888888887776554322 13567
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
.|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.+..++ ..+|+.++.+|++.|.. ..+.
T Consensus 176 ~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~---~~t~~~ll~a~~~~~~~---~~~~ 244 (697)
T PLN03081 176 DARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE---PRTFVVMLRASAGLGSA---RAGQ 244 (697)
T ss_pred HHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHhcCCcH---HHHH
Confidence 78888887754 4666777788888888888888888888876655443 33677788888877773 3444
Q ss_pred HHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
++...+...+ +.||..+||+||++|++.|++++|.++|++|. .+|..+||+||.+|++.|++++|.++|++|.+
T Consensus 245 ~l~~~~~~~g--~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 245 QLHCCVLKTG--VVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred HHHHHHHHhC--CCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4444444333 56777788888888888888888888888774 35777888888888888888888888888887
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cCCchhhH
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SNDFPLSI 323 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~~~~~~~ 323 (425)
.|+.||..||+++|.+|++.|++++|.+++.+|.+.|+.||..+|++|+++|++.|+++.+.. ..+|+.++
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 788888888888888888888888888888888888888888888888888888777766632 45667777
Q ss_pred HHHHhhcchhhHH-HHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeecc
Q 042756 324 LELTEVLNEEEVS-VVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGS 402 (425)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~ 402 (425)
.+|.+.+..+++. .+.++.+.|+.||..||+++|.+|++.|+.++| .++|++|.+ ..|+.||..+|++++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a-----~~~f~~m~~----~~g~~p~~~~y~~li 469 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG-----WEIFQSMSE----NHRIKPRAMHYACMI 469 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH-----HHHHHHHHH----hcCCCCCccchHhHH
Confidence 7777777655554 444455677777777788888878777777777 777777765 257777777787777
Q ss_pred ccccccccchHHHHHHHHHh
Q 042756 403 GKHSTVRGESSVKAMVKKMM 422 (425)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~ 422 (425)
.++++.+..+.+.+++++|.
T Consensus 470 ~~l~r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHhcCCHHHHHHHHHHCC
Confidence 77777777777777776654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.3e-46 Score=387.39 Aligned_cols=366 Identities=14% Similarity=0.136 Sum_probs=289.5
Q ss_pred HHHHHHHh-----hHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC----------CCch
Q 042756 27 LVQCLTAR-----LTKQGQRFLSSLALA-VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT----------HPRL 90 (425)
Q Consensus 27 ~~~~l~~~-----~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~----------~~~~ 90 (425)
+|..++.+ ..+.|.+++..|.+. +.||..+||.||+.|++.|..+.|..+|.+|..++.. ..+.
T Consensus 125 t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~ 204 (697)
T PLN03081 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGN 204 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcC
Confidence 45554444 667799999999999 9999999999999999999999999999999765432 2246
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHH
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~ 170 (425)
.++|+++|++|.+.+ +.|+..+|+.++.+|++.|+.+.+.+++..+.+.+..+. ..+|++||++|++.|+ +++
T Consensus 205 ~~~A~~lf~~M~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d---~~~~n~Li~~y~k~g~---~~~ 277 (697)
T PLN03081 205 YREAFALFREMWEDG-SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD---TFVSCALIDMYSKCGD---IED 277 (697)
T ss_pred HHHHHHHHHHHHHhC-CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc---ceeHHHHHHHHHHCCC---HHH
Confidence 899999999999877 778888888888888888888888888888777665543 3367888888888888 556
Q ss_pred HHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
+.+.+.+|. .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++++.|
T Consensus 278 A~~vf~~m~------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 278 ARCVFDGMP------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHhCC------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 666666652 35666888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-------------cC
Q 042756 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN-------------SN 317 (425)
Q Consensus 251 ~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~-------------~~ 317 (425)
.+.|+.||..+||+||++|++.|++++|.++|++|. .||..|||+||.+|++.|+.++++. ..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 888888888888888888888888888888888775 3677788888888887777666632 22
Q ss_pred CchhhHHHHHhhcchhhHHHHHHHH-h-CCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCe
Q 042756 318 DFPLSILELTEVLNEEEVSVVKELE-D-SSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAE 395 (425)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~ 395 (425)
+|..++.++.+.+..+++..+++.+ + .++.|+..+|++||.+|++.|++++| .+++++| +++||.
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA-----~~~~~~~--------~~~p~~ 494 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA-----YAMIRRA--------PFKPTV 494 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH-----HHHHHHC--------CCCCCH
Confidence 3444455555666666666666655 3 68999999999999999999999999 8887764 568999
Q ss_pred eeeeeccccccccccchHHHHHHHHHh
Q 042756 396 ITVVCGSGKHSTVRGESSVKAMVKKMM 422 (425)
Q Consensus 396 ~t~~~l~~~~~~~~~~~~~~~~~~~~~ 422 (425)
.+|++++.+|+..+..+..+.+.+++.
T Consensus 495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 495 NMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 999999999999888888888777654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.6e-46 Score=392.70 Aligned_cols=363 Identities=15% Similarity=0.154 Sum_probs=249.7
Q ss_pred HHHHHhhHHHHHHHHHHhHHh-cCCCHHHH-----------------------------------HHHHHHHHhcCChHH
Q 042756 29 QCLTARLTKQGQRFLSSLALA-VTRDSKAA-----------------------------------SRLISKFVASSPQFI 72 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~-~~~d~~~~-----------------------------------~~ll~~~~~~~~~~~ 72 (425)
.....|.+++|.++|+.|... ..||..+| |.||+.|++.|+.+.
T Consensus 60 ~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~ 139 (857)
T PLN03077 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH 139 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH
Confidence 344556777777777777765 55555444 556666666666667
Q ss_pred HHHHHHhhhCCCCC----------CCchhhhHHHHHHHhhhcCCCccCHHHHHHHH------------------------
Q 042756 73 ALNALSHLLSPDTT----------HPRLSSLAFPLYMRITEESWFQWNPKLVAEII------------------------ 118 (425)
Q Consensus 73 a~~~~~~~l~~~~~----------~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll------------------------ 118 (425)
|+.+|.+|..++.. ..+.+++|+++|++|...+ +.||..||+.+|
T Consensus 140 A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~ 218 (857)
T PLN03077 140 AWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-VRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF 218 (857)
T ss_pred HHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence 77777666443321 1234677777777776655 556655554444
Q ss_pred -----------HHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 119 -----------AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 119 -----------~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
.+|++.|++++|.++|++|.. ++ ..+||++|.+|++.|+ .+++++.+.+|...+ +.|
T Consensus 219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~------~d-~~s~n~li~~~~~~g~---~~eAl~lf~~M~~~g--~~P 286 (857)
T PLN03077 219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR------RD-CISWNAMISGYFENGE---CLEGLELFFTMRELS--VDP 286 (857)
T ss_pred CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC------CC-cchhHHHHHHHHhCCC---HHHHHHHHHHHHHcC--CCC
Confidence 444444455555555554431 11 2245555555555555 444444555554443 455
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
|..||+++|.+|++.|+.+.|.+++..|.+.|+.||..+||++|.+|++.|++++|.++|++|.+ ||.++||+||.
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~ 362 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMIS 362 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHH
Confidence 55566666666666566666666666666666666666666666666666666666666666653 57777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc-------------cCCchhhHHHHHhhcchhh
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN-------------SNDFPLSILELTEVLNEEE 334 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 334 (425)
+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.+.+ ...++.++..|.+.+..++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 888888888999999999999999999999999999999999888743 2345667778888887766
Q ss_pred HHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccccccchHH
Q 042756 335 VSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSV 414 (425)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~~~~~~~~ 414 (425)
+. ++++.+..+|.++||+||.+|++.|+.++| +++|++|.. +++||..||++++.+|++.+..+..
T Consensus 443 A~---~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA-----~~lf~~m~~------~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 443 AL---EVFHNIPEKDVISWTSIIAGLRLNNRCFEA-----LIFFRQMLL------TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HH---HHHHhCCCCCeeeHHHHHHHHHHCCCHHHH-----HHHHHHHHh------CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 66 555566679999999999999999999999 999999975 6999999999999999998777777
Q ss_pred HHHHHHHh
Q 042756 415 KAMVKKMM 422 (425)
Q Consensus 415 ~~~~~~~~ 422 (425)
+++...+.
T Consensus 509 ~~i~~~~~ 516 (857)
T PLN03077 509 KEIHAHVL 516 (857)
T ss_pred HHHHHHHH
Confidence 76665543
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=8.1e-17 Score=155.44 Aligned_cols=305 Identities=9% Similarity=-0.028 Sum_probs=229.1
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCcc
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~ 109 (425)
.+..|.+++|.+.|..+....+.+..++..+...+...|+++.|...+..++.... .. ...
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------------------~~-~~~ 105 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPD------------------LT-REQ 105 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCC------------------CC-HHH
Confidence 35567899999999999887445677899999999999988888877777654310 00 001
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc--c
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY--V 187 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--p 187 (425)
+...+..+...|.+.|++++|.++|+++.+. .+....++..+...+.+.|+++++.+.++ ++....+... .
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~ 178 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKDWQKAIDVAE---RLEKLGGDSLRVE 178 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhchHHHHHHHHH---HHHHhcCCcchHH
Confidence 2356788899999999999999999999864 22224478899999999999655544444 4433321110 0
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
....|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+-.....+++.++.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~ 257 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLME 257 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHH
Confidence 12246678888899999999999999998753 22456888888999999999999999999987643333567899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCC
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVL 347 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (425)
+|...|++++|..+++++.+. .|+...+..+...+.+.|+.+++ ...+.+.++. .
T Consensus 258 ~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A---------------------~~~l~~~l~~--~ 312 (389)
T PRK11788 258 CYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAA---------------------QALLREQLRR--H 312 (389)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH---------------------HHHHHHHHHh--C
Confidence 999999999999999999876 57777778888888887776553 2233344443 4
Q ss_pred cccceeeccccchhc---ccCcchhHHHHHHHHHHHHHhhccCCCCCCCCee
Q 042756 348 DEAMKWDSGETKLDL---HGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEI 396 (425)
Q Consensus 348 ~~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~ 396 (425)
|+..+++.++..+.. +|+.+++ +.+|++|.+ .+++|+..
T Consensus 313 P~~~~~~~l~~~~~~~~~~g~~~~a-----~~~~~~~~~-----~~~~~~p~ 354 (389)
T PRK11788 313 PSLRGFHRLLDYHLAEAEEGRAKES-----LLLLRDLVG-----EQLKRKPR 354 (389)
T ss_pred cCHHHHHHHHHHhhhccCCccchhH-----HHHHHHHHH-----HHHhCCCC
Confidence 888888888877664 5688899 999999998 78877776
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.76 E-value=5.8e-16 Score=164.86 Aligned_cols=362 Identities=8% Similarity=-0.010 Sum_probs=228.4
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC-------------CchhhhHHHHHH
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-------------PRLSSLAFPLYM 99 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~-------------~~~~~~a~~lf~ 99 (425)
.|++++|.+.|+.+....+.+..++..+...+.+.|+.+.+...+.+++...... .+..++|..+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3456666666666655544456666666666666667667766666664432211 124566777777
Q ss_pred HhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 042756 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179 (425)
Q Consensus 100 ~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~ 179 (425)
.+.... +.+..+|..+...+.+.|++++|.+.|+++.+... .....+..+...+.+.|++ +++...+.+..
T Consensus 592 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~ 662 (899)
T TIGR02917 592 EAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP----DSALALLLLADAYAVMKNY---AKAITSLKRAL 662 (899)
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCH---HHHHHHHHHHH
Confidence 765432 23566677777777777777777777777765421 1122456677777777774 34444444443
Q ss_pred hcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH
Q 042756 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT 259 (425)
Q Consensus 180 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~ 259 (425)
... ..+..+|..+...+...|++++|.++++.+.+.+ .++...+..+...+.+.|++++|.+.|+.+.+.+ |+.
T Consensus 663 ~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 736 (899)
T TIGR02917 663 ELK---PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS 736 (899)
T ss_pred hcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc
Confidence 221 1124577777777777777777777777777654 3456677777777778888888888888777653 444
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc--------cCCchhhH----HHHH
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN--------SNDFPLSI----LELT 327 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~--------~~~~~~~~----~~~~ 327 (425)
.++..+..++.+.|+.++|.+.+.++.+.. ..+...+..+...|...|+.+++.. .+...... ..+.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 667777778888888888888888777642 3456677777777777777666632 11111111 1233
Q ss_pred hhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccc
Q 042756 328 EVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHST 407 (425)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~ 407 (425)
..+..+....+.+.++.. .-+..++..+...|...|++++| .++|+++.+ .+.. |..++..+...+..
T Consensus 816 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A-----~~~~~~a~~-----~~~~-~~~~~~~l~~~~~~ 883 (899)
T TIGR02917 816 ELKDPRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRA-----LPLLRKAVN-----IAPE-AAAIRYHLALALLA 883 (899)
T ss_pred hcCcHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH-----HHHHHHHHh-----hCCC-ChHHHHHHHHHHHH
Confidence 334422222333333321 22345677778888899999999 999999987 4432 67777777777777
Q ss_pred cccchHHHHHHHHHh
Q 042756 408 VRGESSVKAMVKKMM 422 (425)
Q Consensus 408 ~~~~~~~~~~~~~~~ 422 (425)
.+..+....+++++.
T Consensus 884 ~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 884 TGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHh
Confidence 777777777777764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.74 E-value=3.8e-15 Score=158.63 Aligned_cols=334 Identities=8% Similarity=-0.016 Sum_probs=216.5
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC-------------CchhhhHH
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-------------PRLSSLAF 95 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~-------------~~~~~~a~ 95 (425)
..+..|..++|.++++.+....+.+..+++.+...+...|+.+.|...+.+++...... .+..++|.
T Consensus 440 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 519 (899)
T TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519 (899)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 34456678888888888877666678888999999999999999999998887544321 23567788
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 96 PLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 96 ~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
+.|+.+...+ +.+..++..+...+.+.|+.++|..+|+++.+... .....+..+...|.+.|+ .+++...+
T Consensus 520 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~---~~~A~~~~ 590 (899)
T TIGR02917 520 QRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP----QEIEPALALAQYYLGKGQ---LKKALAIL 590 (899)
T ss_pred HHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc----cchhHHHHHHHHHHHCCC---HHHHHHHH
Confidence 8888877654 23666777788888888888888888888765421 112345667777888877 44444444
Q ss_pred HHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
.++.... ..+...|..+..+|.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+|+.+.+..
T Consensus 591 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 665 (899)
T TIGR02917 591 NEAADAA---PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK- 665 (899)
T ss_pred HHHHHcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 4443322 1234577788888888888888888888777642 2345667777777777788888888877776643
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cC--CchhhHH
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SN--DFPLSIL 324 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~--~~~~~~~ 324 (425)
+.+..+|..+...+...|++++|.++++.+.+.+ .++...+..+...+...|+++.++. +. .+..+..
T Consensus 666 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 744 (899)
T TIGR02917 666 PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHR 744 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHH
Confidence 2346777777777777777777777777776654 3455566666666666666655532 00 0111122
Q ss_pred HHHhhcchhhHHH-HHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 325 ELTEVLNEEEVSV-VKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 325 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+...+..+++.. +.+.++ ....+..+++.+...|...|+.++| .++|+++.+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~~~~ 798 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLK-THPNDAVLRTALAELYLAQKDYDKA-----IKHYRTVVK 798 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCcCHHHH-----HHHHHHHHH
Confidence 3344444444332 222222 2233455666666666667777777 777777665
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=1.7e-15 Score=146.15 Aligned_cols=289 Identities=11% Similarity=0.053 Sum_probs=211.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+++|+..|.++.+.+ +.+..++..+...+.+.|++++|.++++.+..............+..+...|.+.|++ +
T Consensus 50 ~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~---~ 124 (389)
T PRK11788 50 QPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL---D 124 (389)
T ss_pred ChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH---H
Confidence 4455666666655543 1356688889999999999999999999988753322222234678899999999994 5
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS----GFEYKCIIYGYGRLGLLEDMER 245 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~a~~ 245 (425)
++...+.++.... .++..+++.++..+.+.|++++|.+.|+.+...+-.++ ...|..+...+.+.|++++|.+
T Consensus 125 ~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 125 RAEELFLQLVDEG---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHcCC---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 5555555554321 23456999999999999999999999999988653332 2245677788899999999999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHH
Q 042756 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILE 325 (425)
Q Consensus 246 ~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 325 (425)
+|+++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+-.....+++.+..+|.+.|+.+++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~----------- 269 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL----------- 269 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH-----------
Confidence 999998753 23467888899999999999999999999987532222456788888888877765542
Q ss_pred HHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccc
Q 042756 326 LTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKH 405 (425)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~ 405 (425)
..+.++.+. .|+...++.+...+.+.|++++| .++|+++.+ ..|+..++..++..+
T Consensus 270 ----------~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A-----~~~l~~~l~-------~~P~~~~~~~l~~~~ 325 (389)
T PRK11788 270 ----------EFLRRALEE--YPGADLLLALAQLLEEQEGPEAA-----QALLREQLR-------RHPSLRGFHRLLDYH 325 (389)
T ss_pred ----------HHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHH-----HHHHHHHHH-------hCcCHHHHHHHHHHh
Confidence 222333332 36666678889999999999999 999999887 369999888777644
Q ss_pred cc-------cccchHHHHHHHHHh
Q 042756 406 ST-------VRGESSVKAMVKKMM 422 (425)
Q Consensus 406 ~~-------~~~~~~~~~~~~~~~ 422 (425)
.. .+....+++++++..
T Consensus 326 ~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 326 LAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred hhccCCccchhHHHHHHHHHHHHH
Confidence 32 234445666665443
No 11
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4.6e-13 Score=121.68 Aligned_cols=323 Identities=13% Similarity=0.194 Sum_probs=212.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcC
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA-VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~ 105 (425)
....+..|-++++.-+++.|.+. ...+...--.|+..-+-.++...-+. -++-|-.|.+.+
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~------------------E~~~Fv~~~~~~ 183 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFA------------------EWEEFVGMRNFG 183 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcch------------------hHHHHhhccccc
Confidence 56667778888888888888888 55555555555444333221111010 122333443332
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCC
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 185 (425)
.- +..+ -+.|++.+ ++-+.. +..+ .+|.+||.++|+-.. .+.+.+++.+..... .
T Consensus 184 E~--S~~s--------WK~G~vAd---L~~E~~----PKT~---et~s~mI~Gl~K~~~---~ERA~~L~kE~~~~k--~ 238 (625)
T KOG4422|consen 184 ED--STSS--------WKSGAVAD---LLFETL----PKTD---ETVSIMIAGLCKFSS---LERARELYKEHRAAK--G 238 (625)
T ss_pred cc--cccc--------cccccHHH---HHHhhc----CCCc---hhHHHHHHHHHHHHh---HHHHHHHHHHHHHhh--h
Confidence 11 1111 12355443 333332 1122 378889999988876 666666666665554 4
Q ss_pred ccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHCCCCcCHHh
Q 042756 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED----MERIVNQMESDGTRVDTVC 261 (425)
Q Consensus 186 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~ 261 (425)
..+..+||.+|.+-.-... .++..+|.+..+.||..|||+++++.++.|+++. |.+++.+|++-|+.|...+
T Consensus 239 kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsS 314 (625)
T KOG4422|consen 239 KVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSS 314 (625)
T ss_pred eeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhh
Confidence 5677799999887664433 7889999999999999999999999999998765 6778889999999999999
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHH----hCCCCC----CHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcch
Q 042756 262 SNMVLSSYGDHNELSR-MVLWLQKMK----DSGIPF----SVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE 332 (425)
Q Consensus 262 yn~li~~~~~~g~~~~-A~~l~~~M~----~~g~~p----d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (425)
|..+|..+++.++..+ |..+..+.. ...++| |..-|...|+.|.+..+.+.+.+ ++++.+.+..
T Consensus 315 yh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~-------v~~ll~tg~N 387 (625)
T KOG4422|consen 315 YHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQ-------VHGLLKTGDN 387 (625)
T ss_pred HHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHH-------HHHHHHcCCc
Confidence 9999999999888755 444444432 233343 55678888888888777655433 3333333321
Q ss_pred hhHHHHHHHHhCCCCccc---ceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccccc
Q 042756 333 EEVSVVKELEDSSVLDEA---MKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVR 409 (425)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~~~ 409 (425)
.. .+.|+. .-|.-+....|.....+.- +.+|+.|.- .-+-|+..|-..+++|....+
T Consensus 388 ~~----------~ig~~~~~~fYyr~~~~licq~es~~~~-----~~~Y~~lVP-----~~y~p~~~~m~~~lrA~~v~~ 447 (625)
T KOG4422|consen 388 WK----------FIGPDQHRNFYYRKFFDLICQMESIDVT-----LKWYEDLVP-----SAYFPHSQTMIHLLRALDVAN 447 (625)
T ss_pred hh----------hcChHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcc-----ceecCCchhHHHHHHHHhhcC
Confidence 11 011221 2344455566666666776 888999887 778899999999999888888
Q ss_pred cchHHHHHHHHHhh
Q 042756 410 GESSVKAMVKKMMV 423 (425)
Q Consensus 410 ~~~~~~~~~~~~~~ 423 (425)
..+.+.+++.++..
T Consensus 448 ~~e~ipRiw~D~~~ 461 (625)
T KOG4422|consen 448 RLEVIPRIWKDSKE 461 (625)
T ss_pred cchhHHHHHHHHHH
Confidence 88999988888753
No 12
>PF13041 PPR_2: PPR repeat family
Probab=99.55 E-value=1.1e-14 Score=95.85 Aligned_cols=50 Identities=26% Similarity=0.391 Sum_probs=37.6
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
||+++||++|++|++.|++++|.++|++|.+.|+.||..||++||++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777763
No 13
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=2.1e-14 Score=94.47 Aligned_cols=50 Identities=30% Similarity=0.644 Sum_probs=33.1
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 236 (425)
||+.+||++|++|++.|++++|+++|++|++.|++||..||+++|++|+|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56666666666666666666666666666666666666666666666654
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.44 E-value=1.5e-10 Score=118.44 Aligned_cols=315 Identities=13% Similarity=0.063 Sum_probs=212.8
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chh
Q 042756 25 LTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLS 91 (425)
Q Consensus 25 ~~~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~ 91 (425)
..+..++.+|...+|+.+++......+-+......+.-+....|+.+.|...+.+++......+ +..
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 3467778889999999999999888444455555566677778999999999999876544322 356
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~ 171 (425)
++|...|++..... +-+...+..+...+...|+.++|.+.++.+...... .+. .+..+ ..+.+.|++ .++
T Consensus 127 ~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~---a~~~~-~~l~~~g~~---~eA 196 (656)
T PRK15174 127 ATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGD---MIATC-LSFLNKSRL---PED 196 (656)
T ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHH---HHHHH-HHHHHcCCH---HHH
Confidence 77888888876643 135667777888888889999999888877654221 221 22233 336777884 444
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH----HHHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED----MERIV 247 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~----a~~~~ 247 (425)
...+.+..... ..++...+..+..++.+.|++++|...|++..... +.+...+..+-.++...|++++ |...|
T Consensus 197 ~~~~~~~l~~~--~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 197 HDLARALLPFF--ALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHhcC--CCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 44454443332 11233455566778888899999999999888753 2346677788888888898875 78888
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHhhccCCchhhHHHH
Q 042756 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV-RTYNSVLNSCSTIMSMLQDLNSNDFPLSILEL 326 (425)
Q Consensus 248 ~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
+...+.. +.+...+..+...+...|++++|...+++..+. .|+. ..+..+..++.+.|+++.+.
T Consensus 274 ~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~------------ 338 (656)
T PRK15174 274 RHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAAS------------ 338 (656)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHH------------
Confidence 8877653 225678888888888999999999998887764 4543 44555556666666654442
Q ss_pred HhhcchhhHHHHHHHHhCCCCcccce-eeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 327 TEVLNEEEVSVVKELEDSSVLDEAMK-WDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+.++++. .|+... +..+..++...|+.++| .+.|++..+
T Consensus 339 ---------~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA-----~~~l~~al~ 380 (656)
T PRK15174 339 ---------DEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA-----ESVFEHYIQ 380 (656)
T ss_pred ---------HHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH-----HHHHHHHHH
Confidence 222333332 244322 33345667888999998 888888776
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.40 E-value=1.2e-09 Score=111.62 Aligned_cols=337 Identities=10% Similarity=-0.073 Sum_probs=220.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHH
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAF 95 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~ 95 (425)
.....|.++.|.+.|+.... ..|+...|..+-.+|.+.|+++.|...+.+.+..+.... +.+++|+
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~-~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~ 214 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE-CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADAL 214 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34556789999999988765 467888899999999999999999999988876543321 2355555
Q ss_pred HHHHHhhhcCCC-------------------------------ccCHHHHHHH---------------------------
Q 042756 96 PLYMRITEESWF-------------------------------QWNPKLVAEI--------------------------- 117 (425)
Q Consensus 96 ~lf~~m~~~~~~-------------------------------~~~~~~~~~l--------------------------- 117 (425)
.-|......+.+ .|........
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (615)
T TIGR00990 215 LDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQ 294 (615)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccch
Confidence 444322111100 0110000000
Q ss_pred HHHH------HhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 118 IAFL------DKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 118 l~~~------~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
+... ...+++++|.+.|++..+.+.. .+.....|..+-..+...|++ +++...+.+.....+. ....
T Consensus 295 ~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-~~~~a~a~~~lg~~~~~~g~~---~eA~~~~~kal~l~P~---~~~~ 367 (615)
T TIGR00990 295 LQLGLKSPESKADESYEEAARAFEKALDLGKL-GEKEAIALNLRGTFKCLKGKH---LEALADLSKSIELDPR---VTQS 367 (615)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCC---cHHH
Confidence 0000 1225788999999988765422 233344677777888888984 4555555555443321 2347
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
|..+...+...|++++|...|++..+.. +-+..+|..+...+...|++++|...|+...+.. +.+...|..+...+.+
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYK 445 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHH
Confidence 8888888899999999999999887752 2246788888888999999999999999887753 2256777888888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHhhc--------cCCc-------hhhHH----HHHhhcc
Q 042756 272 HNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQDLN--------SNDF-------PLSIL----ELTEVLN 331 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~~~--------~~~~-------~~~~~----~~~~~~~ 331 (425)
.|++++|+..|++..+. .| +...|+.+-..+...|+++++.. .+.. .+++. .+...+.
T Consensus 446 ~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 446 EGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred CCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999988764 34 45677778888888887777642 1110 01111 1111233
Q ss_pred hhhHHHH-HHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 332 EEEVSVV-KELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 332 ~~~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+++... .+.++.. ..+...|..+...+...|++++| +++|++..+
T Consensus 524 ~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eA-----i~~~e~A~~ 570 (615)
T TIGR00990 524 FIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEA-----LKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHH-----HHHHHHHHH
Confidence 3333332 2223321 22335688899999999999999 999999876
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=8.3e-11 Score=111.79 Aligned_cols=337 Identities=12% Similarity=0.018 Sum_probs=225.8
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC-------------CCchhhhHHHHH
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT-------------HPRLSSLAFPLY 98 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~-------------~~~~~~~a~~lf 98 (425)
.+|.+.+|+.+++.+.+.-+-.+..|..+-.++...|+.+.|...+.+.+.-... ..|++++|...|
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 3568999999999998864447899999999999999999999999888654321 224577788877
Q ss_pred HHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 99 ~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
.+..+... .=++.|+.|-..|-.+|++..|.+-|++..+- +|...-.|-.|-+.|...+.++.+..++.....+
T Consensus 208 lkAi~~qp--~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl----dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQP--CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL----DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCC--ceeeeehhcchHHhhcchHHHHHHHHHHhhcC----CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 77554431 13446777888888899999999999987753 3333346778888888888876666666555554
Q ss_pred hhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 179 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
.+.. ..++..|-..|-..|.+|-|++.|++..+ +.|+ ...|+.|-+++-..|++.+|...++....... -
T Consensus 282 rpn~------A~a~gNla~iYyeqG~ldlAI~~Ykral~--~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~ 352 (966)
T KOG4626|consen 282 RPNH------AVAHGNLACIYYEQGLLDLAIDTYKRALE--LQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-N 352 (966)
T ss_pred CCcc------hhhccceEEEEeccccHHHHHHHHHHHHh--cCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-c
Confidence 3222 23666666777777888888888877776 4555 45777887787777888888877777665432 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHhhc----cCCchhhHH-HHHhhcc
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV-RTYNSVLNSCSTIMSMLQDLN----SNDFPLSIL-ELTEVLN 331 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~ 331 (425)
.....|.|-..|...|.+++|..+|....+ +.|.- ..++.|-..|-..|++.+++. .-...|... .|.++|.
T Consensus 353 hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGn 430 (966)
T KOG4626|consen 353 HADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGN 430 (966)
T ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence 355667777777777777777777777654 34443 466777777777777776643 111112211 3333332
Q ss_pred h----hhHHHHHHHHhCCCC--cc-cceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeee
Q 042756 332 E----EEVSVVKELEDSSVL--DE-AMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEIT 397 (425)
Q Consensus 332 ~----~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t 397 (425)
. ++...+.+...+.+. |. +...+-|-+.|...|+..+| ++-+++... ++||..-
T Consensus 431 t~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A-----I~sY~~aLk-------lkPDfpd 491 (966)
T KOG4626|consen 431 TYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA-----IQSYRTALK-------LKPDFPD 491 (966)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH-----HHHHHHHHc-------cCCCCch
Confidence 1 111112222222222 22 34678888999999999999 999998765 7888643
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.33 E-value=2.8e-09 Score=109.11 Aligned_cols=269 Identities=8% Similarity=-0.060 Sum_probs=180.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC-------------CchhhhH
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-------------PRLSSLA 94 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~-------------~~~~~~a 94 (425)
...+..|+.++|.+.|+.+...-+.+...+..+...+...|+.+.|...+.+.+...... .+..++|
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA 163 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQA 163 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHH
Confidence 555678889999999999887655567788888888899999999999998887643322 1346778
Q ss_pred HHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 042756 95 FPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174 (425)
Q Consensus 95 ~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~ 174 (425)
...++.+..... .+...+..+ ..+.+.|++++|..+++.+.+...... ...+..+..++.+.|++++ +...
T Consensus 164 ~~~~~~~~~~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~---~~~~~~l~~~l~~~g~~~e---A~~~ 234 (656)
T PRK15174 164 ISLARTQAQEVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALER---QESAGLAVDTLCAVGKYQE---AIQT 234 (656)
T ss_pred HHHHHHHHHhCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHCCCHHH---HHHH
Confidence 888887755431 123333333 347778888888888888765422111 1233455667778888444 4444
Q ss_pred HHHHhhcCCCCccChhHHHHHHHHHHhcCChhH----HHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE----AENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
+.+.....+ -+...+..+-..+.+.|++++ |...|++..+. .| +...+..+...+.+.|++++|...++.
T Consensus 235 ~~~al~~~p---~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 235 GESALARGL---DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHhcCC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 444433221 124477778888888888875 78888887764 34 456778888888888888888888888
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHHHHHHHHh
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT-YNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-~~~ll~~~~~~~~~~~~ 313 (425)
..+..- -+...+..+...|.+.|++++|...|+++.+. .|+... +..+..++...|+.+.+
T Consensus 310 al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA 371 (656)
T PRK15174 310 SLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEA 371 (656)
T ss_pred HHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHH
Confidence 776532 24556777778888888888888888887764 455433 22334456666665555
No 18
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=1.1e-08 Score=93.59 Aligned_cols=321 Identities=11% Similarity=0.047 Sum_probs=208.9
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCc----------hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHH
Q 042756 52 RDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPR----------LSSLAFPLYMRITEESWFQWNPKLVAEIIAFL 121 (425)
Q Consensus 52 ~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~----------~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~ 121 (425)
-+..+|..||.++|+....+.|++++.+.-...+.... -+....++..+|.... .+||..|+|+++++.
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqk-m~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQK-MTPNLFTFNALLSCA 283 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhh-cCCchHhHHHHHHHH
Confidence 45566777777777766666677666665333222111 1333467788888776 889999999999999
Q ss_pred HhcCChhH----HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc--CCCCcc----ChhH
Q 042756 122 DKQGQREE----AETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYV----KRQA 191 (425)
Q Consensus 122 ~~~g~~~~----A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~p----~~~~ 191 (425)
++.|+++. |.+++.+|++-|..|.- .+|..+|.-+++.++..+ -+...+.+...+ |...+| |..-
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsL---sSyh~iik~f~re~dp~k--~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSL---SSYHLIIKNFKRESDPQK--VASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcch---hhHHHHHHHhcccCCchh--hhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 99998876 45677888888776663 489999999999998643 233333333222 212333 3456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKG----LEPSG---FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~---~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~ 264 (425)
|-.-+..|.+..+.+-|.++-...+... +.|+. +=|..+..+.|....++...+.++.|.-+-+-|+..+..-
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7778888889999999999988776532 44442 3467788888999999999999999998888899999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-------------------HH--HH------HHhhccC
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST-------------------IM--SM------LQDLNSN 317 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~-------------------~~--~~------~~~~~~~ 317 (425)
++.+.-..|.++-.-+++.+|+..|..-....-.-++.-+|+ +. .+ ...+...
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 999999999988888888888776633222222222222222 10 00 0012233
Q ss_pred Cch-----hhHHHHHhhcchhhHHHHHHHH-hCCCC-cccceeeccc---cchhcccCcchhHHHHHHHHHHHHHh
Q 042756 318 DFP-----LSILELTEVLNEEEVSVVKELE-DSSVL-DEAMKWDSGE---TKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 318 ~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~li---~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
+++ ...-.+.+.|...++..+..++ +++.+ |-....|.|+ .+-.+.+.+..| +.++.-|..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA-----~~~lQ~a~~ 589 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQA-----IEVLQLASA 589 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHH-----HHHHHHHHH
Confidence 333 2223456666667777666666 44433 4444556444 444456677777 666666643
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.29 E-value=6.6e-09 Score=113.46 Aligned_cols=336 Identities=10% Similarity=-0.023 Sum_probs=212.1
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC----------------------
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH---------------------- 87 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~---------------------- 87 (425)
.+..|++++|.+.|+...+.-+-|..++..+-..+.+.|+.++|...|.+.+......
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g 358 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQG 358 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHH
Confidence 3456789999999999887655588999999999999999999999999988644322
Q ss_pred -----CchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc
Q 042756 88 -----PRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162 (425)
Q Consensus 88 -----~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~ 162 (425)
.+.+++|.+.|++....+. .+...+..+-..+...|++++|++.|++..+... +....+..+...|. .
T Consensus 359 ~~~~~~g~~~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p----~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 359 DAALKANNLAQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP----GNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHH-h
Confidence 1246778888988877642 3566777788999999999999999999886522 11224455666664 3
Q ss_pred CCcccHHHHHHHHHHHhhcCCC-C-----ccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 042756 163 DSKRGFDDTYARLNQLVNSSSS-V-----YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYG 235 (425)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~-~-----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~ 235 (425)
++ .+++...+.+....... . ......+..+...+...|++++|.+.|++..+. .| +...+..+...|.
T Consensus 432 ~~---~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 432 QS---PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLR 506 (1157)
T ss_pred cC---HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 44 34444444433221100 0 001124566778888899999999999999874 45 4567788888999
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---------HHHHHHHHH
Q 042756 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY---------NSVLNSCST 306 (425)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~---------~~ll~~~~~ 306 (425)
+.|++++|...++...+..- -+...+..+...+...|+.++|...++++......++...+ ..+.+.+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999876431 24444444555566788888888888776543333322211 122233444
Q ss_pred HHHHHHhhc-----cCCch---hhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHH
Q 042756 307 IMSMLQDLN-----SNDFP---LSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWM 378 (425)
Q Consensus 307 ~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 378 (425)
.|+.+++.. +.... .+...+...+..+++....+..-.....+...+..+...|...|+.++| .+.+
T Consensus 586 ~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA-----~~~l 660 (1157)
T PRK11447 586 SGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA-----RAQL 660 (1157)
T ss_pred CCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH-----HHHH
Confidence 444444321 11111 1111334444444444333222222223445566666777777777777 6666
Q ss_pred HHHHh
Q 042756 379 DEMRN 383 (425)
Q Consensus 379 ~~m~~ 383 (425)
+...+
T Consensus 661 ~~ll~ 665 (1157)
T PRK11447 661 AKLPA 665 (1157)
T ss_pred HHHhc
Confidence 65543
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.25 E-value=5.7e-09 Score=113.96 Aligned_cols=333 Identities=11% Similarity=0.015 Sum_probs=205.6
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCc------------hhhhHHHH
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPR------------LSSLAFPL 97 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~------------~~~~a~~l 97 (425)
.+..|++++|.+.|++.....+.+...+..+-..+...|+++.|...+.+.+........ ..++|+..
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~ 440 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAF 440 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHH
Confidence 345678999999999998875567788888999999999999999999999865433221 23455555
Q ss_pred HHHhhhcCCC-------ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHH
Q 042756 98 YMRITEESWF-------QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170 (425)
Q Consensus 98 f~~m~~~~~~-------~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~ 170 (425)
++.+.....- ......+..+...+...|++++|.+.|++..+.. |+....+..+...|.+.|+++++.+
T Consensus 441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~----P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD----PGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5554322100 0012234556677888999999999999987652 2223356678888999999555444
Q ss_pred HHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHcCCCHH
Q 042756 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF---------EYKCIIYGYGRLGLLE 241 (425)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---------ty~~ll~~~~~~g~~~ 241 (425)
.++.+.+..+. +...+..+.-.+.+.++.++|+..++.+......++.. .+......+...|+.+
T Consensus 517 ~l~~al~~~P~------~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~ 590 (1157)
T PRK11447 517 LMRRLAQQKPN------DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA 590 (1157)
T ss_pred HHHHHHHcCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence 44444332211 12244444445667788888888887764332222221 1223455677778888
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc------
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN------ 315 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~------ 315 (425)
+|.++++. .+.+...+..+-..|.+.|+.++|+..|++..+.. .-+...+..+...+...|+..++..
T Consensus 591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll 664 (1157)
T PRK11447 591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP 664 (1157)
T ss_pred HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 88777762 13345566677777777888888888888776642 2245667777777777666666532
Q ss_pred -c--CCchh---hHHHHHhhcchhhHHHHHHH-HhCCCC-c----ccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 316 -S--NDFPL---SILELTEVLNEEEVSVVKEL-EDSSVL-D----EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 316 -~--~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
. ..... +...+...+..+++..+.+. +..... | +...+..+-..+...|++++| ++.|++...
T Consensus 665 ~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A-----~~~y~~Al~ 739 (1157)
T PRK11447 665 ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA-----LETYKDAMV 739 (1157)
T ss_pred ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHh
Confidence 1 11111 11133444555555444333 332211 1 123455556778889999999 999988764
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.21 E-value=3.8e-08 Score=102.93 Aligned_cols=132 Identities=7% Similarity=0.033 Sum_probs=91.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhh
Q 042756 27 LVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSL 93 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~ 93 (425)
+--....|+.++|++++......-+.+...+..+...+...|++..|...+.+.+......+ +..++
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 34445677888888888887754445566788888888888999999999988776543322 35778
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCc
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~ 165 (425)
|+..+++..... +-+.. +..+-..+...|+.++|...+++..+.... . ...+..+..++...+..
T Consensus 102 A~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~---~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 102 ALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-T---QQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-C---HHHHHHHHHHHHHCCCh
Confidence 888888877654 23455 777788888889999999999988775221 1 22334455566555553
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.20 E-value=6.6e-08 Score=98.99 Aligned_cols=292 Identities=10% Similarity=-0.079 Sum_probs=155.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhhhCCCCCC------------CchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhc
Q 042756 57 ASRLISKFVASSPQFIALNALSHLLSPDTTH------------PRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQ 124 (425)
Q Consensus 57 ~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~------------~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~ 124 (425)
+...-..+.+.|+++.|...+.+.+...... -+.+++|++.++...+.+ +-+...+..+-.+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHc
Confidence 4455667777888888888888876543210 124677787777766544 12556777788888888
Q ss_pred CChhHHHHHHHHHHHhcCCCchhHHHHHHHH-------------------------HHHHHh------------------
Q 042756 125 GQREEAETLILETLSKLGSRERELVLFYCNL-------------------------IDSFCK------------------ 161 (425)
Q Consensus 125 g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~l-------------------------i~~~~~------------------ 161 (425)
|++++|..-|.................+..+ +..|..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 8888887766544322111110000000000 000000
Q ss_pred ----------------cCCcccHHHHHHHHHHHhhcCCCCcc-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-
Q 042756 162 ----------------HDSKRGFDDTYARLNQLVNSSSSVYV-KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS- 223 (425)
Q Consensus 162 ----------------~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 223 (425)
....+..+++...+.+....+. ..| +...|+.+-..+...|++++|+..|++..+. .|+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~-~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGK-LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 0000112233333333332221 112 2235555555666666666666666665543 343
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHH
Q 042756 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNSVLN 302 (425)
Q Consensus 224 ~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~ 302 (425)
..+|..+...+...|++++|...|+...+.. +-+..+|..+...|...|++++|...|++..+. .|+ ...+..+-.
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~ 441 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHH
Confidence 3355555566666666666666666555432 123555666666666666666666666665543 232 233333333
Q ss_pred HHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHH
Q 042756 303 SCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMR 382 (425)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~ 382 (425)
.+.+.|+ .+++....+-.......+...|+.+-..+...|++++| ++.|++..
T Consensus 442 ~~~~~g~----------------------~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A-----~~~~~~Al 494 (615)
T TIGR00990 442 TQYKEGS----------------------IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEA-----IEKFDTAI 494 (615)
T ss_pred HHHHCCC----------------------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH-----HHHHHHHH
Confidence 3333333 33333333322222233456788888999999999999 99999987
Q ss_pred h
Q 042756 383 N 383 (425)
Q Consensus 383 ~ 383 (425)
+
T Consensus 495 ~ 495 (615)
T TIGR00990 495 E 495 (615)
T ss_pred h
Confidence 6
No 23
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.12 E-value=1.3e-09 Score=107.71 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=148.7
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc---------------------CCCchhHHHHHHHH
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL---------------------GSRERELVLFYCNL 155 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~---------------------~~~~~~~~~~y~~l 155 (425)
++-.+...| +.||-.||..+|..||..|+++.|- +|..|..+. ..+..+...+|..|
T Consensus 12 fla~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~L 89 (1088)
T KOG4318|consen 12 FLALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNL 89 (1088)
T ss_pred HHHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCCCchhHHHHH
Confidence 344566666 7899999999999999999999998 888876321 11222234589999
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhhc----CC---------------CCccCh----------hHHHHHHHHHHhcC---
Q 042756 156 IDSFCKHDSKRGFDDTYARLNQLVNS----SS---------------SVYVKR----------QALKSMISGLCEMG--- 203 (425)
Q Consensus 156 i~~~~~~g~~~~~~~~~~~~~~~~~~----~~---------------~~~p~~----------~~~~~li~~~~~~g--- 203 (425)
.++|...||...++.+-+.+.+...+ +. ..-||. ..|..+++-..+.-
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 99999999977655554434443322 10 111332 24555555543321
Q ss_pred --------------ChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 204 --------------QPHEAENLIEEMRVKGL-EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 204 --------------~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..+-..++.+.. ..+. .||..+|..++++-..+|+++.|..++.+|++.|+..+.+-|..|+-+
T Consensus 170 ~~~p~~vfLrqnv~~ntpvekLl~~c-ksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 170 WNAPFQVFLRQNVVDNTPVEKLLNMC-KSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred ccchHHHHHHHhccCCchHHHHHHHH-HHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 111122222222 2222 599999999999999999999999999999999999999988888877
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
.+...-++.+++-|.+.|+.|+..|+..-+-.+.+.|.
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 78888999999999999999999999988877777444
No 24
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.11 E-value=2.1e-07 Score=89.86 Aligned_cols=271 Identities=9% Similarity=-0.017 Sum_probs=194.3
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC--------------Cchhhh
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH--------------PRLSSL 93 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~--------------~~~~~~ 93 (425)
...+..|++++|++.+..-.....-....|-....+..+.|+.+.+...+.++....... .+..+.
T Consensus 92 l~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 92 LLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 334556899999988877554311123334333445477899999999999987654332 235788
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHH----HHHHHHHHHHHhcCCcccHH
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV----LFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~y~~li~~~~~~g~~~~~~ 169 (425)
|...++...+.+ +-++.....+...|.+.|++++|.+++..+.+....++.... ..|..++....+..+ .+
T Consensus 172 Al~~l~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~---~~ 246 (398)
T PRK10747 172 ARHGVDKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG---SE 246 (398)
T ss_pred HHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC---HH
Confidence 999999987765 236778889999999999999999999999987655333222 133333444333333 34
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.....+.+.... ...+......+..++...|+.++|.+++++..+. .||.. -.++.+....++.+++.+..+.
T Consensus 247 ~l~~~w~~lp~~---~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 247 GLKRWWKNQSRK---TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHhCCHH---HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHH
Confidence 444444443322 1124458889999999999999999999999874 45542 2244555677999999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
..+.. +-|...+.++-..+.+.|++++|.+.|+...+. .|+..+|..+-..+.+.|+.+.+
T Consensus 320 ~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A 380 (398)
T PRK10747 320 QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEA 380 (398)
T ss_pred HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 88763 235667888999999999999999999999875 79999999999998888877665
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.10 E-value=8.6e-10 Score=101.40 Aligned_cols=247 Identities=12% Similarity=0.110 Sum_probs=108.7
Q ss_pred HHHhhHHHHHHHHHHhHHhc-CCCHHHHHHHHHHHHh-cCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 31 LTARLTKQGQRFLSSLALAV-TRDSKAASRLISKFVA-SSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~-~~d~~~~~~ll~~~~~-~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
+..|+++.|.++++...... +|+-..|-.++..++. .++ .+.|.+.++.+...+..
T Consensus 19 ~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~---------------------~~~A~~ay~~l~~~~~~- 76 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD---------------------YDEAIEAYEKLLASDKA- 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccc---------------------ccccccccccccccccc-
Confidence 34667788888886544442 4444444433333333 343 44555555555444423
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
++..+..++.. ...++.++|.+++.+.-++.. .+ ..+...+..+.+.++++.+.++++.+.+.. ...++
T Consensus 77 -~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~--~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 145 (280)
T PF13429_consen 77 -NPQDYERLIQL-LQDGDPEEALKLAEKAYERDG--DP---RYLLSALQLYYRLGDYDEAEELLEKLEELP----AAPDS 145 (280)
T ss_dssp ------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------T-
T ss_pred -ccccccccccc-ccccccccccccccccccccc--cc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc----CCCCC
Confidence 45556667766 688999999999887655432 22 246778888899999666666665554321 13356
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
...|..+...+.+.|+.++|++.|++..+. .|+ ....+.++..+...|+.+++.++++...+.. ..|...|..+..
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~ 222 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAA 222 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 678999999999999999999999999884 564 6788899999999999999999999887754 456778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
+|...|+.++|+.+|++..+.. +.|..+...+..++...|+.+.+.
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT---------
T ss_pred Hhcccccccccccccccccccc-cccccccccccccccccccccccc
Confidence 9999999999999999987642 347788888888888888887664
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.06 E-value=2.8e-07 Score=97.37 Aligned_cols=273 Identities=8% Similarity=-0.059 Sum_probs=166.7
Q ss_pred cccchhHHHHHHHHhhHHHHHHHHHHhHHh---cCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhhhCCCCC-CCchhh
Q 042756 20 LRQQRLTLVQCLTARLTKQGQRFLSSLALA---VTRDSKAASRLISKFVASSP---QFIALNALSHLLSPDTT-HPRLSS 92 (425)
Q Consensus 20 ~~~~~~~~~~~l~~~~~~~a~~~~~~m~~~---~~~d~~~~~~ll~~~~~~~~---~~~a~~~~~~~l~~~~~-~~~~~~ 92 (425)
+..+-+.+|..+..|+.++|.++|+..... ..++....+.++..|.+... ...+..+...+-..+.. .-+...
T Consensus 376 ~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 455 (987)
T PRK09782 376 LTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLP 455 (987)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhh
Confidence 333445689999999999999999998874 44466677799999999866 44444443222111100 001111
Q ss_pred h---HHHHHHHhhhcCCCcc--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc
Q 042756 93 L---AFPLYMRITEESWFQW--NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167 (425)
Q Consensus 93 ~---a~~lf~~m~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~ 167 (425)
+ +...+....... +. +...|..+-.++.. ++.++|...|.+..... |+.. ....+...+...|++
T Consensus 456 ~~~~~~~~~~~al~~~--p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~----Pd~~-~~L~lA~al~~~Gr~-- 525 (987)
T PRK09782 456 GIADNCPAIVRLLGDM--SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ----PDAW-QHRAVAYQAYQVEDY-- 525 (987)
T ss_pred hhhhhHHHHHHhcccC--CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC----CchH-HHHHHHHHHHHCCCH--
Confidence 1 222233322211 12 55666666666665 77888888777766542 1211 122233444577884
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
+++...+.+.... .|+...+..+..++.+.|++++|...|++..+.. |+ ...+..+.....+.|++++|...
T Consensus 526 -eeAi~~~rka~~~----~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 526 -ATALAAWQKISLH----DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred -HHHHHHHHHHhcc----CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4444444444322 1233356666777888888888888888887753 43 33333444445566888888888
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHh
Q 042756 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV-RTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 247 ~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~~~~~~~~~ 313 (425)
++...+. .|+...|..+...+.+.|+.++|+..|++..+. .|+. ..++.+-..+...|+.+++
T Consensus 599 ~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 599 LTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 8887765 366778888888888888888888888887765 4544 4555555566666665544
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.04 E-value=8e-07 Score=85.30 Aligned_cols=251 Identities=13% Similarity=0.062 Sum_probs=185.0
Q ss_pred HhhHHHHHHHHHHhHHhcCCC-HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC-------------CCchhhhHHHHH
Q 042756 33 ARLTKQGQRFLSSLALAVTRD-SKAASRLISKFVASSPQFIALNALSHLLSPDTT-------------HPRLSSLAFPLY 98 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~-------------~~~~~~~a~~lf 98 (425)
+|.+-.|++.|++.... .|+ ..+|-.|-..|...+.++.|...+.+.+..... ..|.+|.|+.-|
T Consensus 231 ~Gei~~aiq~y~eAvkl-dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 231 QGEIWLAIQHYEEAVKL-DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred cchHHHHHHHHHHhhcC-CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 45667777777776543 443 578888888999999999999988888654332 335788899999
Q ss_pred HHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 99 ~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
++-.+...- =+..|+.|-.++-..|++.+|+..|.+...- .+...+ .-+.|-+.|...|.++ ++..++...
T Consensus 310 kral~~~P~--F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l-~p~had---am~NLgni~~E~~~~e---~A~~ly~~a 380 (966)
T KOG4626|consen 310 KRALELQPN--FPDAYNNLANALKDKGSVTEAVDCYNKALRL-CPNHAD---AMNNLGNIYREQGKIE---EATRLYLKA 380 (966)
T ss_pred HHHHhcCCC--chHHHhHHHHHHHhccchHHHHHHHHHHHHh-CCccHH---HHHHHHHHHHHhccch---HHHHHHHHH
Confidence 887654421 2457999999999999999999999886643 222322 4578888898888854 444444444
Q ss_pred hhcCCCCccC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 179 VNSSSSVYVK-RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG-FEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 179 ~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
.. +.|. ...+|.|-..|-..|++++|+..|++..+ +.|+. ..|+.+-+.|-..|+++.|.+.+...+..+
T Consensus 381 l~----v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n-- 452 (966)
T KOG4626|consen 381 LE----VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-- 452 (966)
T ss_pred Hh----hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--
Confidence 32 3343 24788899999999999999999998877 78874 489999999999999999999988877653
Q ss_pred cC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 042756 257 VD-TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNS 303 (425)
Q Consensus 257 ~~-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~ 303 (425)
|. ....+.|-..|-..|++.+|++-|++..+ ++||.. .|-.++.+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 43 67888899999999999999999998765 467653 34444443
No 28
>PF12854 PPR_1: PPR repeat
Probab=99.03 E-value=3.1e-10 Score=67.33 Aligned_cols=33 Identities=18% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
+|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 366666666666666666666666666666666
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.99 E-value=2.7e-06 Score=89.16 Aligned_cols=105 Identities=10% Similarity=-0.034 Sum_probs=70.7
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC------------chhhhHHHH
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP------------RLSSLAFPL 97 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~------------~~~~~a~~l 97 (425)
....|.+.+|.++|+.....-+.+...+..+...+...|+.+.|...+.+.+......+ +..++|+..
T Consensus 59 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~ 138 (765)
T PRK10049 59 YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRA 138 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 34556788888888887766455566777788888888888888888888876543322 235667778
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILE 136 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~ 136 (425)
+++..+... -+...+..+...+.+.|..+.|.+.++.
T Consensus 139 l~~al~~~P--~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 139 MTQALPRAP--QTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 877766541 2444555566666666777766666653
No 30
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.97 E-value=1.3e-06 Score=84.82 Aligned_cols=273 Identities=7% Similarity=-0.046 Sum_probs=185.7
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCC-HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC--------------Cchhh
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRD-SKAASRLISKFVASSPQFIALNALSHLLSPDTTH--------------PRLSS 92 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d-~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~--------------~~~~~ 92 (425)
.-.+..|+++.|++.+....+. .|+ ...|-..-.+....|+.+.+...+.+........ .+..+
T Consensus 92 lla~~~g~~~~A~~~l~~~~~~-~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 92 LLKLAEGDYAKAEKLIAKNADH-AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHHhCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3346677999999999776554 454 3444555677777899999999999975543221 24578
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH---HhcCCcccHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF---CKHDSKRGFD 169 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~---~~~g~~~~~~ 169 (425)
.|...++.+.+... -++.+...+...+.+.|++++|.+++..+.+.+...+.... ..-..++ ...+..+
T Consensus 171 ~Al~~l~~l~~~~P--~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~---~l~~~a~~~~l~~~~~~--- 242 (409)
T TIGR00540 171 AARHGVDKLLEMAP--RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFA---DLEQKAEIGLLDEAMAD--- 242 (409)
T ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHh---
Confidence 89999999988752 26678889999999999999999999999987554333211 1111111 2222211
Q ss_pred HHHHHHHHHhhcCCC-CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCHHHHHH
Q 042756 170 DTYARLNQLVNSSSS-VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE---YKCIIYGYGRLGLLEDMER 245 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~g~~~~a~~ 245 (425)
+..+.+.+.....+. ...+...+-.+...+...|+.++|.+++++..+. .||... .....-.....++.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 111222222221110 1124568899999999999999999999999985 454432 1222222344578888999
Q ss_pred HHHHHHHCCCCcCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 246 IVNQMESDGTRVDT---VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 246 ~~~~m~~~g~~~~~---~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.++...+. .|+. ....++-..+.+.|++++|.+.|+........||...+..+...+.+.|+.+.+
T Consensus 321 ~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A 389 (409)
T TIGR00540 321 LIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEA 389 (409)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHH
Confidence 99877664 3443 556688889999999999999999655545589999999998888887776554
No 31
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.96 E-value=3.9e-07 Score=80.56 Aligned_cols=193 Identities=12% Similarity=0.066 Sum_probs=143.8
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.....+..+...+...|++++|.+.+++..+.. +.....+..+...+...|+++.+.+.++...+..+ .+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~ 98 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD----PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP------NN 98 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CC
Confidence 456678888999999999999999999987642 22234677788889999995554444444433321 23
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
...+..+...+...|++++|.+.|++.......| ....+..+...+.+.|++++|.+.++...+.. +.+...+..+..
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 177 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAE 177 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHH
Confidence 3478888999999999999999999998753323 34567778888999999999999999988753 225678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.+...|++++|...+++..+. ...+...+..+...+...|+...+
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999998876 234455665566666555655443
No 32
>PF12854 PPR_1: PPR repeat
Probab=98.95 E-value=9.2e-10 Score=65.27 Aligned_cols=34 Identities=26% Similarity=0.607 Sum_probs=24.3
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 218 ~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
+|+.||.+|||+||++||+.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3667777777777777777777777777777663
No 33
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.93 E-value=3.5e-06 Score=74.98 Aligned_cols=264 Identities=12% Similarity=0.115 Sum_probs=156.0
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC-----------------Cch
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-----------------PRL 90 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~-----------------~~~ 90 (425)
.+.+++...+.|.++|-.|.+.-+-+..+--+|=+.|-+.|..+.|..+-...+.+-... .|.
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhh
Confidence 677888899999999999987533445555567777777888888888777766543321 234
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHhcCCcccHH
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
+|.|+.+|..+...+.+ -....-.|+..|-...+|++|.++-+++.+.++.+. ......|.-|-..+.-..+ .+
T Consensus 123 ~DRAE~~f~~L~de~ef--a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~---~d 197 (389)
T COG2956 123 LDRAEDIFNQLVDEGEF--AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD---VD 197 (389)
T ss_pred hhHHHHHHHHHhcchhh--hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh---HH
Confidence 67777777776664434 333455677777777777777777776665433322 1222334444444433444 44
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.+...+.+.......+. ..=-.+-+.+...|++++|.+.++...+.+..--..+...+..+|...|+.++....+..
T Consensus 198 ~A~~~l~kAlqa~~~cv---RAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 198 RARELLKKALQADKKCV---RASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHhhCccce---ehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45555555544443321 111122344566677777777777777765444455667777777777777777777777
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
+.+.. ++...-++|-+--....-.+.|...+.+-... +|+..-+.-+|..
T Consensus 275 ~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 275 AMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 66642 22223333333333333345555555554433 5777766666654
No 34
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.93 E-value=1e-06 Score=85.63 Aligned_cols=258 Identities=13% Similarity=0.052 Sum_probs=179.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHh-------cCCCHHHHHH-HHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHH
Q 042756 28 VQCLTARLTKQGQRFLSSLALA-------VTRDSKAASR-LISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYM 99 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~-------~~~d~~~~~~-ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~ 99 (425)
..+..+|+++.|++++++.... ..|++.+... +-..|...+++.+|..++.+ |+.+++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~--------------AL~i~e 272 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEE--------------ALTIRE 272 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHH--------------HHHHHH
Confidence 4556788999999999887765 2344433322 44556666777777766666 445555
Q ss_pred HhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLS----KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 100 ~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
.....+ -+--+.+++.|-..|.+.|++++|...+++..+ ..+...+.....++.+...++..++++.+...+...
T Consensus 273 ~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a 351 (508)
T KOG1840|consen 273 EVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA 351 (508)
T ss_pred HhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 554443 223445788888899999999999998887654 233345555556677888888889877666655555
Q ss_pred HHHhhcCCCCccC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCC-CHHHHHHHHHHHHcCCCHHHHH
Q 042756 176 NQLVNSSSSVYVK----RQALKSMISGLCEMGQPHEAENLIEEMRVKG------LEP-SGFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 176 ~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p-~~~ty~~ll~~~~~~g~~~~a~ 244 (425)
.+..... +.++ ..+++.|-..|...|++++|.++|++..... ..+ ....++.|-.+|.+.+...+|.
T Consensus 352 l~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~ 429 (508)
T KOG1840|consen 352 LKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE 429 (508)
T ss_pred HHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence 5544422 2222 2599999999999999999999999987541 223 3557888999999999999999
Q ss_pred HHHHHHHH----CCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH---h---CCCCCCHHHHHHHHH
Q 042756 245 RIVNQMES----DGT--RVDTVCSNMVLSSYGDHNELSRMVLWLQKMK---D---SGIPFSVRTYNSVLN 302 (425)
Q Consensus 245 ~~~~~m~~----~g~--~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~---~---~g~~pd~~t~~~ll~ 302 (425)
++|.+-.. .|. +-...+|-.|...|.+.|++++|+++.+... + .+..|+.........
T Consensus 430 ~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 430 QLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 99987543 332 1236889999999999999999999988764 2 233455555444443
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.92 E-value=8.1e-07 Score=78.48 Aligned_cols=202 Identities=10% Similarity=0.059 Sum_probs=146.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
....+..+...+...|+++.|...+.+.+ ..+ +.+...+..+...+...|++++|.+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l---------------------~~~--p~~~~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL---------------------EHD--PDDYLAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------HhC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34566667777777776666666555543 222 1245677788889999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
.|++..+.... . ...+..+...+...|++ +++...+.+...... .......+..+..++...|++++|...|
T Consensus 87 ~~~~al~~~~~-~---~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 87 SFRRALTLNPN-N---GDVLNNYGTFLCQQGKY---EQAMQQFEQAIEDPL-YPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred HHHHHHhhCCC-C---HHHHHHHHHHHHHcccH---HHHHHHHHHHHhccc-cccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99988765322 2 22566778888889984 445555555443211 1112346777888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
++..... +.+...+..+...+...|++++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus 159 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 159 TRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9988753 224668888899999999999999999998876 344667778888899999999999998887764
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=1.5e-07 Score=90.90 Aligned_cols=268 Identities=10% Similarity=-0.036 Sum_probs=191.5
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHH
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~ 170 (425)
..+|..+|..+... +.-+..+...+-.+|...+++++|+.+|+...+.......+ ...|.+.+=-+-+.=. +..
T Consensus 335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~-meiyST~LWHLq~~v~---Ls~ 408 (638)
T KOG1126|consen 335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG-MEIYSTTLWHLQDEVA---LSY 408 (638)
T ss_pred HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-hhHHHHHHHHHHhhHH---HHH
Confidence 57788888885543 33355677778899999999999999999998753332222 3356666544433211 233
Q ss_pred HHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 171 TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 171 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
..+.+-+..+.. |. +|.++-++|.-.++.+.|++.|++..+ +.| ..++|+-+-.-+....++|.|...|+.
T Consensus 409 Laq~Li~~~~~s----Pe--sWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 409 LAQDLIDTDPNS----PE--SWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHhhCCCC----cH--HHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 333333333322 33 999999999999999999999999987 456 678999888888999999999999987
Q ss_pred HHHCCCCcCHHhHHHHH---HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHhhc---------c
Q 042756 250 MESDGTRVDTVCSNMVL---SSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQDLN---------S 316 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li---~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~~~---------~ 316 (425)
... .|...||++- -.|.+.++.+.|+-.|++..+- .| +.+....+...+-+.|.-+++++ .
T Consensus 481 Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 481 ALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 665 5788888865 5688999999999999998764 45 44555666666677777777643 3
Q ss_pred CCchhhHH---HHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 317 NDFPLSIL---ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 317 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
....+..+ .+...+..+++.+..|.++....-+..+|-.+-..|.+.|+.+.| +.-|--|.+
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~A-----l~~f~~A~~ 619 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLA-----LLHFSWALD 619 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHH-----HHhhHHHhc
Confidence 33334444 345555566666666666665555667788888999999999999 777766655
No 37
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.87 E-value=2.8e-06 Score=88.12 Aligned_cols=367 Identities=11% Similarity=0.045 Sum_probs=231.7
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCH--HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC-------------CCchhh
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDS--KAASRLISKFVASSPQFIALNALSHLLSPDTT-------------HPRLSS 92 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~--~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~-------------~~~~~~ 92 (425)
.....+|+...|++.|++..+. .|+. ..+ .++..+...|+.+.|...+.+.+.+... ..+.++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~-~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKA-GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhh-CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 4446677899999999998876 3432 333 8888888999999999999998844322 113578
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
+|+++|+++.+.+.- |+..+..++..+...++.++|++.++++... .+. ...| +..++...+ ..+..+++
T Consensus 120 ~Aiely~kaL~~dP~--n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~-~~~~--l~layL~~~-~~~~~~AL 189 (822)
T PRK14574 120 QALALWQSSLKKDPT--NPDLISGMIMTQADAGRGGVVLKQATELAER----DPT-VQNY--MTLSYLNRA-TDRNYDAL 189 (822)
T ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----Ccc-hHHH--HHHHHHHHh-cchHHHHH
Confidence 999999999887633 4566677889999999999999999998764 222 2234 334544433 22244467
Q ss_pred HHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHH---------------------------------------
Q 042756 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE--------------------------------------- 213 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------------------------------------- 213 (425)
..++++....+. +...+.-++.+..+.|-...|.++..
T Consensus 190 ~~~ekll~~~P~---n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~ 266 (822)
T PRK14574 190 QASSEAVRLAPT---SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDI 266 (822)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 777776654321 22345555555555554444433333
Q ss_pred ---------HHHHc-CCCCCHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 214 ---------EMRVK-GLEPSGF-----EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 214 ---------~m~~~-g~~p~~~-----ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
.+... +-.|... ..--.+-++.+.|+..++.+-++.+...|.+....+--.+.++|...+++++|
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA 346 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKA 346 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 22221 1223211 22234567888999999999999999888776677888999999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHHHHHHHHhhc------c-CCc----------------h----hhHHHH
Q 042756 279 VLWLQKMKDSG-----IPFSVRTYNSVLNSCSTIMSMLQDLN------S-NDF----------------P----LSILEL 326 (425)
Q Consensus 279 ~~l~~~M~~~g-----~~pd~~t~~~ll~~~~~~~~~~~~~~------~-~~~----------------~----~~~~~~ 326 (425)
+.+|+...... ..++......|.-++...++++++.. . ..+ . ..+..+
T Consensus 347 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~ 426 (822)
T PRK14574 347 APILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSL 426 (822)
T ss_pred HHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHH
Confidence 99999986532 22344446778888888888777732 1 111 0 012234
Q ss_pred HhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeecc-ccc
Q 042756 327 TEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGS-GKH 405 (425)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~-~~~ 405 (425)
...+..+.++...+-+...-.-|...+..+-..+...|++.+| .+.++.... +.|+........ .+.
T Consensus 427 ~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A-----~~~~k~a~~-------l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 427 VALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKA-----EQELKAVES-------LAPRSLILERAQAETA 494 (822)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHhh-------hCCccHHHHHHHHHHH
Confidence 4555555554333333222224556777777888888999888 888855543 466654433222 233
Q ss_pred cccccchHHHHHHHHH
Q 042756 406 STVRGESSVKAMVKKM 421 (425)
Q Consensus 406 ~~~~~~~~~~~~~~~~ 421 (425)
...+.....+.++++.
T Consensus 495 l~l~e~~~A~~~~~~l 510 (822)
T PRK14574 495 MALQEWHQMELLTDDV 510 (822)
T ss_pred HhhhhHHHHHHHHHHH
Confidence 3334444444444443
No 38
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.87 E-value=9.5e-08 Score=94.85 Aligned_cols=227 Identities=11% Similarity=0.102 Sum_probs=149.1
Q ss_pred HHHHHhHHh-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHH----HHHhhhcCCCccCHHHHH
Q 042756 41 RFLSSLALA-VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPL----YMRITEESWFQWNPKLVA 115 (425)
Q Consensus 41 ~~~~~m~~~-~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~l----f~~m~~~~~~~~~~~~~~ 115 (425)
.++..+... +.|+.+||.++|..||..|+.+.|- +|.-|-.+.....+.+-.++.. -.++..+. .|.+.+|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--ep~aDtyt 87 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--EPLADTYT 87 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--CCchhHHH
Confidence 456666667 9999999999999999999988877 7766655544333221111111 01233333 47889999
Q ss_pred HHHHHHHhcCChh---HHHHHHHHHHHh---cCCCchhH---------------H----------HHHHHHHHHHHhcCC
Q 042756 116 EIIAFLDKQGQRE---EAETLILETLSK---LGSREREL---------------V----------LFYCNLIDSFCKHDS 164 (425)
Q Consensus 116 ~ll~~~~~~g~~~---~A~~l~~~m~~~---~~~~~~~~---------------~----------~~y~~li~~~~~~g~ 164 (425)
.|+.+|.+.||+. .+++.+..+... .+..++.. . ..|.-++..+.+...
T Consensus 88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pv 167 (1088)
T KOG4318|consen 88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPV 167 (1088)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999999999854 444433332221 01111110 0 011112222211100
Q ss_pred c--ccHHH-----------HHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 165 K--RGFDD-----------TYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 165 ~--~~~~~-----------~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
. ..-.. -++.+..+...... .|+..+|.+++.+-..+|+.+.|..+..+|+++|+..+.+-|-.++
T Consensus 168 sa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 168 SAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred ccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhh
Confidence 0 00000 01122222222222 4788899999999999999999999999999999999999888887
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
.+ .++...++.+...|.+.|+.|+..||...+-.+..+|.
T Consensus 247 ~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 247 LG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 76 88999999999999999999999999999998888666
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.85 E-value=4e-06 Score=80.97 Aligned_cols=238 Identities=8% Similarity=0.013 Sum_probs=174.4
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHH--HHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHH
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAAS--RLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAF 95 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~--~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~ 95 (425)
...|+.+.|.+.|..+.+. .||...+- .....+...|+++.|...+.+........+ +.+++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 5667888999999998764 45543332 446678888999999999999987766554 3578899
Q ss_pred HHHHHhhhcCCCccCH------HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 96 PLYMRITEESWFQWNP------KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 96 ~lf~~m~~~~~~~~~~------~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
+++..+.+.....+.. ..|..++..-.+..+.+...++++.+.+.. +..+ .....+..++...|+ .+
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~-~~~~---~~~~~~A~~l~~~g~---~~ 280 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT-RHQV---ALQVAMAEHLIECDD---HD 280 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH-hCCH---HHHHHHHHHHHHCCC---HH
Confidence 9999998887553332 123334444444455666666666654432 1222 245778899999999 56
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
++...+.+..... || .--.++.+....++.+++++..+...+. .|+ ...+..+-..|.+.|++++|.+.|+
T Consensus 281 ~A~~~L~~~l~~~----~~--~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le 352 (398)
T PRK10747 281 TAQQIILDGLKRQ----YD--ERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFR 352 (398)
T ss_pred HHHHHHHHHHhcC----CC--HHHHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666666665432 22 2233456666779999999999999875 454 5568888999999999999999999
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 249 ~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
...+. .|+..+|-.|...+.+.|+.++|.++|++-.
T Consensus 353 ~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 353 AALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99876 5999999999999999999999999999764
No 40
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.85 E-value=5.5e-08 Score=89.43 Aligned_cols=220 Identities=12% Similarity=0.100 Sum_probs=98.5
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCH
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNP 111 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~ 111 (425)
..++.+.|.+.++.+....+-+...+..++.. ...+++..|..++.....+ . +++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~---------------------~---~~~ 110 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYER---------------------D---GDP 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccc-ccccccccccccccccccc---------------------c---ccc
Confidence 34577788888888876633356667777776 5666666666555554321 1 345
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..+..++..+.+.++++++.+++++.......+ .....|..+...+.+.|+.+.+.+.++...+..+. |...
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~------~~~~ 182 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELPAAP--DSARFWLALAEIYEQLGDPDKALRDYRKALELDPD------DPDA 182 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-----T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHH
Confidence 556668888888899999999999877532222 22345777778888889855444444444444222 2347
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
.+.++..+...|+.+++.++++...... ..|...+..+-.+|...|+.++|...|+...+.. +.|......+.+++..
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQ 260 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccc
Confidence 8888999999999999888888887764 4455677888888999999999999999877643 2377888888899999
Q ss_pred cCCHHHHHHHHHHHH
Q 042756 272 HNELSRMVLWLQKMK 286 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~ 286 (425)
.|+.++|.++..+..
T Consensus 261 ~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 261 AGRKDEALRLRRQAL 275 (280)
T ss_dssp ---------------
T ss_pred ccccccccccccccc
Confidence 999999998877653
No 41
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.84 E-value=4.9e-06 Score=88.14 Aligned_cols=245 Identities=9% Similarity=-0.019 Sum_probs=164.8
Q ss_pred HHHHhhHHHHHHHHHHhHHh---cCC--CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC------------CCchhh
Q 042756 30 CLTARLTKQGQRFLSSLALA---VTR--DSKAASRLISKFVASSPQFIALNALSHLLSPDTT------------HPRLSS 92 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~---~~~--d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~------------~~~~~~ 92 (425)
|...|....+...++..... -++ +...|..+-.++.. +....|...+.+.+..... ..+.++
T Consensus 448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~e 526 (987)
T PRK09782 448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYA 526 (987)
T ss_pred HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHH
Confidence 44455555555555555444 234 66777777777766 5666777766665443221 123477
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
+|...|+.+.... |+...+..+...+.+.|++++|.+.|++..+.. ++....+..+.....+.|+ .+++.
T Consensus 527 eAi~~~rka~~~~---p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~----P~~~~l~~~La~~l~~~Gr---~~eAl 596 (987)
T PRK09782 527 TALAAWQKISLHD---MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG----LGDNALYWWLHAQRYIPGQ---PELAL 596 (987)
T ss_pred HHHHHHHHHhccC---CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CccHHHHHHHHHHHHhCCC---HHHHH
Confidence 7888888764432 333445556777888899999999998887642 1111123333334445588 45555
Q ss_pred HHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
..+.+... ..|+...|..+-..+.+.|++++|...|++.... .| +...++.+-.++...|+.++|...++...
T Consensus 597 ~~~~~AL~----l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 597 NDLTRSLN----IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHH----hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55555543 2345568888889999999999999999998875 45 45577777788999999999999999887
Q ss_pred HCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 252 SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 252 ~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
+..- -+...+..+-.++...|++++|+..|++..+. .|+.
T Consensus 671 ~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 671 KGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 7532 35778888999999999999999999988754 3543
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.82 E-value=3.7e-06 Score=84.77 Aligned_cols=242 Identities=8% Similarity=-0.026 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~ 114 (425)
..++|.++|++..+.-+-+...|..+-.++...+... .....+..++|...+++..+.+. -++..+
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g------------~~~~~~~~~~A~~~~~~Al~ldP--~~~~a~ 341 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMG------------IFDKQNAMIKAKEHAIKATELDH--NNPQAL 341 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcC------------CcccchHHHHHHHHHHHHHhcCC--CCHHHH
Confidence 3456777777766542223445554444333221100 00122356778888888766552 266777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
..+-..+...|++++|...|++..+.. |+....+..+-..+...|++ +++...+.+...-.+. .| ..+..
T Consensus 342 ~~lg~~~~~~g~~~~A~~~~~~Al~l~----P~~~~a~~~lg~~l~~~G~~---~eAi~~~~~Al~l~P~-~~--~~~~~ 411 (553)
T PRK12370 342 GLLGLINTIHSEYIVGSLLFKQANLLS----PISADIKYYYGWNLFMAGQL---EEALQTINECLKLDPT-RA--AAGIT 411 (553)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhcCCC-Ch--hhHHH
Confidence 778788889999999999999987752 22233567788889999995 4555555555433321 11 13344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
+...+...|++++|...+++..... .| +...+..+-.++...|+.++|...+..+.... .-+....+.+...|+..|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4555677899999999999987653 34 34557777888899999999999999876542 124455666667778777
Q ss_pred CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 042756 274 ELSRMVLWLQKMKD-SGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 274 ~~~~A~~l~~~M~~-~g~~pd~~t~~~ll~~~ 304 (425)
++|...++++.+ .+-.|...-+..++.++
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~ 519 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGLLPLVLVA 519 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence 478887887754 22344444444444443
No 43
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.80 E-value=1.2e-05 Score=83.63 Aligned_cols=341 Identities=10% Similarity=-0.006 Sum_probs=195.4
Q ss_pred hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC------------chhhhHHHHHHHh
Q 042756 34 RLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP------------RLSSLAFPLYMRI 101 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~------------~~~~~a~~lf~~m 101 (425)
|+++.|.++|+.+.+..+-+...+..++..+...++.++|+..+.++....+... ....+|++.++++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 5666666666666655333455555556666666666666666666655443211 1122355556665
Q ss_pred hhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHH----HHHHHHHHH-----HhcCCcccHHHHH
Q 042756 102 TEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL----FYCNLIDSF-----CKHDSKRGFDDTY 172 (425)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~----~y~~li~~~-----~~~g~~~~~~~~~ 172 (425)
.+.+ +-+...+..++.++.+.|-...|.++..+-..-.. +.+... ....+|+.- ....++..++.++
T Consensus 196 l~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~--~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 196 VRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVS--AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccC--HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 5543 12455555566666666666666555444221100 000000 001111110 0122333456666
Q ss_pred HHHHHHhhcCCCCccC----hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 173 ARLNQLVNSSSSVYVK----RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
..+..+...-....+. ....--.+-++...|+++++++-|+.+...|.+.-.++-..+.++|...+..++|+.++.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666665432222121 123335667888899999999999999988866456788899999999999999999999
Q ss_pred HHHHCC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------------CCCCHHH-HHHHHHHHHHHHH
Q 042756 249 QMESDG-----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-------------IPFSVRT-YNSVLNSCSTIMS 309 (425)
Q Consensus 249 ~m~~~g-----~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-------------~~pd~~t-~~~ll~~~~~~~~ 309 (425)
...... ..++......|.-+|...+++++|..+++++.+.. -.||-.. +..+...+.-.|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 886532 23345556788999999999999999999998621 1123232 2334455566666
Q ss_pred HHHhhc-------cCCchhhHH-----HHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHH
Q 042756 310 MLQDLN-------SNDFPLSIL-----ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQW 377 (425)
Q Consensus 310 ~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 377 (425)
+.++.. ...-++.+. .+...+...++....+....-..-+..+.-.....+...|++.+| ..+
T Consensus 432 l~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A-----~~~ 506 (822)
T PRK14574 432 LPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQM-----ELL 506 (822)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHH-----HHH
Confidence 666532 111111111 344555556665444443333223345566677777888999998 777
Q ss_pred HHHHHh
Q 042756 378 MDEMRN 383 (425)
Q Consensus 378 ~~~m~~ 383 (425)
.++...
T Consensus 507 ~~~l~~ 512 (822)
T PRK14574 507 TDDVIS 512 (822)
T ss_pred HHHHHh
Confidence 766655
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=2.4e-06 Score=79.48 Aligned_cols=165 Identities=12% Similarity=0.126 Sum_probs=137.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
.+.|...+-+.|+-.++.++|...|+...+- .|.....|+.+-+-|........+-++++...++ ...|-
T Consensus 329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkL----Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi------~p~Dy 398 (559)
T KOG1155|consen 329 RPETCCIIANYYSLRSEHEKAVMYFKRALKL----NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI------NPRDY 398 (559)
T ss_pred CccceeeehhHHHHHHhHHHHHHHHHHHHhc----CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc------CchhH
Confidence 3446777888999999999999999998763 4444567888999999998865566666665554 33456
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..|-.+-.+|.-.+...-|+-.|++... ++| |...|.+|-++|.+.++.++|++.|......|= .+...|..|-+.
T Consensus 399 RAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakL 475 (559)
T KOG1155|consen 399 RAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKL 475 (559)
T ss_pred HHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHH
Confidence 7999999999999999999999999887 566 688999999999999999999999999988763 366899999999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042756 269 YGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~ 287 (425)
|-+.++.++|.+.|.+-++
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999998887654
No 45
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.77 E-value=6.1e-06 Score=80.32 Aligned_cols=199 Identities=15% Similarity=0.096 Sum_probs=148.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC-CccCh-
Q 042756 116 EIIAFLDKQGQREEAETLILETLS----KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS-VYVKR- 189 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~~- 189 (425)
.+-..|...+++++|.-+|+++.+ ..+...+....+++.|-.+|.+.|+++++...++...+....... ..|.+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 356678888999999999999865 344556666778888888999999988877666655555444211 12332
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C--C
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK---GLEPS----GFEYKCIIYGYGRLGLLEDMERIVNQMESD-----G--T 255 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~----~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-----g--~ 255 (425)
.-++.+...|...+++++|..++.+..+. -..++ ..+|+.|-..|-+.|++++|+++|+..... | .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 36777888888899999999999977653 12222 459999999999999999999999987642 1 1
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCH-HHHHHHHHHHHHHHHHHHhh
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMK----DSGI-PFSV-RTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~----~~g~-~pd~-~t~~~ll~~~~~~~~~~~~~ 314 (425)
.-....+|.|-..|.+.+..++|.++|.+-. ..|. .||. .||..|...|...|+++.+.
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~ 470 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE 470 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH
Confidence 2235678889999999999999999999853 3332 3333 67888888888888887764
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=98.75 E-value=4.3e-06 Score=84.31 Aligned_cols=204 Identities=11% Similarity=-0.073 Sum_probs=136.3
Q ss_pred chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 042756 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD---------KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159 (425)
Q Consensus 89 ~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~ 159 (425)
...++|..+|++..+.+.- ++..|..+-.++. ..+++++|...+++..+. .|+....+..+-..+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~--~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l----dP~~~~a~~~lg~~~ 348 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN--SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL----DHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 3567888888887765511 3445554444433 234578999999988764 222234567777778
Q ss_pred HhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcCC
Q 042756 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG-FEYKCIIYGYGRLG 238 (425)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~ty~~ll~~~~~~g 238 (425)
...|+++++.+.++...+..+. +...|..+-..+...|++++|...+++..+. .|+. ..+..++..+...|
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPI------SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhcc
Confidence 8889955544444444443211 2347888889999999999999999999885 4542 23334455577789
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHHHH
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS-VLNSCSTIM 308 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~-ll~~~~~~~ 308 (425)
++++|...+++..+..-.-+...+..+-..|...|+.++|...+.++... .|+..+... +...++..|
T Consensus 421 ~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 421 GIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred CHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 99999999998876532224556777888889999999999999987654 455444433 333445544
No 47
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.73 E-value=7.6e-06 Score=72.90 Aligned_cols=212 Identities=11% Similarity=0.044 Sum_probs=94.2
Q ss_pred ChHHHHHHHHhhhCCCCCC-------------CchhhhHHHHHHHhhhcCCCccCHHHH--HHHHHHHHhcCChhHHHHH
Q 042756 69 PQFIALNALSHLLSPDTTH-------------PRLSSLAFPLYMRITEESWFQWNPKLV--AEIIAFLDKQGQREEAETL 133 (425)
Q Consensus 69 ~~~~a~~~~~~~l~~~~~~-------------~~~~~~a~~lf~~m~~~~~~~~~~~~~--~~ll~~~~~~g~~~~A~~l 133 (425)
+.++|.+.|.+|+..+... .|.+|.|+++...+.++...+.+-... --|-.-|...|-+|.|+++
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~ 129 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDI 129 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 5566666666665433211 123455555555544332232222221 1233344455555555555
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHH
Q 042756 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213 (425)
Q Consensus 134 ~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (425)
|..+.+.+...+. .-..|+.-|-...+++++.++.+.+..+.+....+. =..-|.-+-..+....+++.|..++.
T Consensus 130 f~~L~de~efa~~----AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e-IAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 130 FNQLVDEGEFAEG----ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE-IAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHhcchhhhHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH-HHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5555543222111 234455555555554444444444433322211100 00122222233333445555555555
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 214 EMRVKGLEPSGF-EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 214 ~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+..+.+ |+.+ .--.+-+.+...|+++.|.+.++...+.+...-..+-..|..+|...|+.++...++.++.+
T Consensus 205 kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 205 KALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 555432 2211 22222344555555555555555555554333445555555555555555555555555544
No 48
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.72 E-value=3.5e-05 Score=70.72 Aligned_cols=286 Identities=11% Similarity=0.011 Sum_probs=187.8
Q ss_pred CCCccccccccchhHH--HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-
Q 042756 12 PWNSRCCRLRQQRLTL--VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP- 88 (425)
Q Consensus 12 ~~~~~~~~~~~~~~~~--~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~- 88 (425)
+|.++.+..+...... --.+..|++.+|+++...-.+...-....|..-.++--..|+.+.+-..+.+.-...+...
T Consensus 74 ~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l 153 (400)
T COG3071 74 GWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL 153 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH
Confidence 3544444333333322 2336678999999999886555444556677777777788899999888888755422211
Q ss_pred -------------chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHH----HH
Q 042756 89 -------------RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV----LF 151 (425)
Q Consensus 89 -------------~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~----~~ 151 (425)
+.++.|..-.+...+.. +-++.+......+|.+.|++..+..++.++.+.+...++... .+
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~--pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a 231 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMT--PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQA 231 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhC--cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHH
Confidence 23455666666665554 236778999999999999999999999999987776554432 25
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 152 y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
|..+++-....+. .+.......+...+- .-+...--+++.-+.++|+.++|.++.++-.+++.-|+.. .+
T Consensus 232 ~~glL~q~~~~~~---~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~ 301 (400)
T COG3071 232 WEGLLQQARDDNG---SEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RL 301 (400)
T ss_pred HHHHHHHHhcccc---chHHHHHHHhccHHh---hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HH
Confidence 5566665555555 444333444433221 1122266778888999999999999999999887766622 22
Q ss_pred HHHHcCCCHHHHHHHHHHHH-HCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQME-SDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~ 310 (425)
-.+.+-++...-.+..+.-. ..+-.| -.+.+|-..|.+.+.+.+|.+.|+...+ ..|+..+|+.+-.++.+.|+.
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~ 377 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEP 377 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCCh
Confidence 34455566655555555433 333333 5677777777788888888888885554 367888888888888777766
Q ss_pred HHh
Q 042756 311 LQD 313 (425)
Q Consensus 311 ~~~ 313 (425)
..+
T Consensus 378 ~~A 380 (400)
T COG3071 378 EEA 380 (400)
T ss_pred HHH
Confidence 655
No 49
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=2.6e-06 Score=82.65 Aligned_cols=266 Identities=9% Similarity=0.026 Sum_probs=184.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-c--h---------hhhHH
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-R--L---------SSLAF 95 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-~--~---------~~~a~ 95 (425)
|..+..-.+++|...|..+.....-+.-....+-.+|..-+.++++..+|...-......- + . -+-++
T Consensus 327 ~~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L 406 (638)
T KOG1126|consen 327 YRSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL 406 (638)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH
Confidence 4555556888899999995554333345556677788888899999999988743322110 0 0 01111
Q ss_pred HHH-HHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 042756 96 PLY-MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174 (425)
Q Consensus 96 ~lf-~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~ 174 (425)
..+ +++...+ +-.+.+|..+-++|+-+++.+.|++.|+...+. ++....+|+.+-+-+..... .+.+..-
T Consensus 407 s~Laq~Li~~~--~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~faYayTLlGhE~~~~ee---~d~a~~~ 477 (638)
T KOG1126|consen 407 SYLAQDLIDTD--PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPRFAYAYTLLGHESIATEE---FDKAMKS 477 (638)
T ss_pred HHHHHHHHhhC--CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCccchhhhhcCChhhhhHH---HHhHHHH
Confidence 111 1122222 235678999999999999999999999988763 55445566666666666555 4455555
Q ss_pred HHHHhhcCCCCccChhHHH---HHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 175 LNQLVNSSSSVYVKRQALK---SMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
++.. +..|...|| .+--.|.|.++++.|+-.|+...+ +.| +.+....+...+-+.|+.++|.+++++.
T Consensus 478 fr~A------l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 478 FRKA------LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHhh------hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 5554 334444555 567789999999999999998877 556 5667778888899999999999999998
Q ss_pred HHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHHh
Q 042756 251 ESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 251 ~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~~~~~~~~~ 313 (425)
.-..-+ |..+---....+...++.++|+..|++.++. .|+.. .|-.+-..|.+.|+-..+
T Consensus 550 ~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 550 IHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred HhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHH
Confidence 766543 5555555677778889999999999999874 77765 455555667776665554
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.68 E-value=3.5e-06 Score=81.80 Aligned_cols=192 Identities=10% Similarity=0.014 Sum_probs=123.9
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKL-VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
.++.|.+.+....+.. |++.. |-....+..+.|+.+.|.+.+.+..+... .+. ....-.....+...|+++.+
T Consensus 99 ~~~~A~~~l~~~~~~~---~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p--~~~-l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 99 DYAKAEKLIAKNADHA---AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG--NDN-ILVEIARTRILLAQNELHAA 172 (409)
T ss_pred CHHHHHHHHHHHhhcC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--cCc-hHHHHHHHHHHHHCCCHHHH
Confidence 6777777776654432 45433 33345666778999999999999876432 221 11223346677788996655
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HcCCCHHHHHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMER 245 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~---~~~g~~~~a~~ 245 (425)
.+.++.+.+..+.. ..++..+...+...|++++|.+++....+.+..+.......-..++ ...+..+.+.+
T Consensus 173 l~~l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 173 RHGVDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 55555555543222 2488899999999999999999999999987543332211111222 22233333333
Q ss_pred HHHHHHHCC---CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 246 IVNQMESDG---TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 246 ~~~~m~~~g---~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
.+..+.+.. .+.+...+-.+...+...|+.++|.+++++..+. .||..
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~ 297 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDR 297 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcc
Confidence 444444331 1137889999999999999999999999999875 45543
No 51
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.60 E-value=0.00028 Score=71.12 Aligned_cols=276 Identities=13% Similarity=0.022 Sum_probs=183.6
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhh--hCCCCC-----------CCchhhhHHHH
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHL--LSPDTT-----------HPRLSSLAFPL 97 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~--l~~~~~-----------~~~~~~~a~~l 97 (425)
..+|+.++|.+++.++.+..+.....|-+|-..|-..|+.++++....-+ +.+... ..+.++.|.-.
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 44589999999999999987788899999999999999999888766544 332211 11245666666
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
|.+..+.+. ++...+---...|-+.|+...|.+-|.++-+...+.+-.- ...--..++.+...++ -+.+++.+.
T Consensus 230 y~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le 304 (895)
T KOG2076|consen 230 YSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALE 304 (895)
T ss_pred HHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 666555442 3444444456778888999999999999887533211110 0111234556666666 355666666
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---------------------------CHHHHHH
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP---------------------------SGFEYKC 229 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---------------------------~~~ty~~ 229 (425)
....... -..+...+|+++..|.+...++.|......+.....++ +...+ -
T Consensus 305 ~~~s~~~-~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 305 GALSKEK-DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHhhcc-ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 6554221 22344489999999999999999999999888732222 22221 2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDG--TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~ 307 (425)
++-++......+...-+..-..+.. +.-+...|--+.++|-+.|++.+|+.+|.........-+...|--+-++|-..
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2334445555555555555555555 33457889999999999999999999999998765444566676676666666
Q ss_pred HHHHHh
Q 042756 308 MSMLQD 313 (425)
Q Consensus 308 ~~~~~~ 313 (425)
+..+.+
T Consensus 463 ~e~e~A 468 (895)
T KOG2076|consen 463 GEYEEA 468 (895)
T ss_pred hhHHHH
Confidence 665444
No 52
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.56 E-value=1e-07 Score=57.07 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=28.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888888888888888888888888888887
No 53
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=1.9e-07 Score=55.88 Aligned_cols=33 Identities=39% Similarity=0.782 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
+||++|++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 677777777777777777777777777777776
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.48 E-value=8.8e-06 Score=72.58 Aligned_cols=228 Identities=11% Similarity=0.001 Sum_probs=164.1
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCcc
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~ 109 (425)
-+.-|..++|++.|..-+.. .|-+.||-.|-+.|.+-+++..|+.++.+.+.. ++.
T Consensus 233 ylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-----------------------fP~ 288 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-----------------------FPF 288 (478)
T ss_pred HHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----------------------CCc
Confidence 35556888888888877666 444556666888899888888888888776532 333
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
|.....-+...+-..++.++|.++|+...+.... ++.....+-..|.-.++++-+...++.+.+|....+.
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~----nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe----- 359 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPI----NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE----- 359 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCc----cceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH-----
Confidence 4433334555666678899999999988764222 1223344555666677777677777777777544432
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF--EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
.|+.+--+|.-.+++|-++.-|.+....--.|+.. +|-.+-...+.-||+..|.+.|+....+.- -+...+|.|--
T Consensus 360 -Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLav 437 (478)
T KOG1129|consen 360 -LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAV 437 (478)
T ss_pred -HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHH
Confidence 88888888888999999999999988775556543 666666677788999999999998776543 26788999988
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
.-.+.|++++|..++..... +.|+.
T Consensus 438 L~~r~G~i~~Arsll~~A~s--~~P~m 462 (478)
T KOG1129|consen 438 LAARSGDILGARSLLNAAKS--VMPDM 462 (478)
T ss_pred HHhhcCchHHHHHHHHHhhh--hCccc
Confidence 88999999999999988664 35553
No 55
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=0.00013 Score=67.95 Aligned_cols=265 Identities=10% Similarity=-0.025 Sum_probs=180.3
Q ss_pred HHHHHHhhHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHhhhCCCCC-------------CCchh
Q 042756 28 VQCLTARLTKQGQRFLSSLALA-VTRDSKAASRLISKFVA-SS-PQFIALNALSHLLSPDTT-------------HPRLS 91 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~-~~-~~~~a~~~~~~~l~~~~~-------------~~~~~ 91 (425)
...+.+|+++.|.+++.-+.+. -+.-..+.|.|--.+.- .| ++..|-..-...+..+.. ..+.+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4457788999999998887766 33333333333322222 22 455565555555544322 23568
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~ 171 (425)
++|.+.|++....+ .+.....||+=+ .+-+.|++++|++.|-++..-... ...+.--+.+-|-...+ ..++
T Consensus 507 dka~~~ykeal~nd-asc~ealfnigl-t~e~~~~ldeald~f~klh~il~n----n~evl~qianiye~led---~aqa 577 (840)
T KOG2003|consen 507 DKAAEFYKEALNND-ASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLN----NAEVLVQIANIYELLED---PAQA 577 (840)
T ss_pred HHHHHHHHHHHcCc-hHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhC---HHHH
Confidence 99999999988777 555666777444 456679999999999887653221 12233345555555555 4455
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.+++.+.. ..+.-|.....-|-..|-+.|+-..|++.+-+--.- .+-|..|..-+-.-|....-++.+..+|+...
T Consensus 578 ie~~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 578 IELLMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 55554442 223335568889999999999999999877654332 34467777777777888888899999999754
Q ss_pred HCCCCcCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 042756 252 SDGTRVDTVCSNMVLSSYG-DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 252 ~~g~~~~~~~yn~li~~~~-~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~ 308 (425)
- +.|+..-|..||..|. +.|++.+|.++|+..... +.-|......|++.|..+|
T Consensus 654 l--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 654 L--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred h--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 3 5799999999998775 789999999999998654 5667778888888776644
No 56
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=2.9e-07 Score=54.71 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
.+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 466666667766666666666666666666665
No 57
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4e-05 Score=71.26 Aligned_cols=334 Identities=13% Similarity=0.043 Sum_probs=192.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhH
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLA 94 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a 94 (425)
+..+..|..+.|..-|+...+. .|+..+--.|+-.+..-|+-++..+.|.+++.--+.+. ..+.++
T Consensus 284 vtfiq~gqy~dainsfdh~m~~-~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE-APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh-CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 4556778899999999887664 67766555555555556688888888888854322111 112222
Q ss_pred H--HHHHHhhhcC-----------------CCccCHH---------------------HHHHHHHHHHhcCChhHHHHHH
Q 042756 95 F--PLYMRITEES-----------------WFQWNPK---------------------LVAEIIAFLDKQGQREEAETLI 134 (425)
Q Consensus 95 ~--~lf~~m~~~~-----------------~~~~~~~---------------------~~~~ll~~~~~~g~~~~A~~l~ 134 (425)
+ ..++.|.+.+ ++.|+-. .--.-...+.+.|+++.|.+++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 2 1222222211 1111110 0001234567889999999998
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH-----HHHHhcCChhHH
Q 042756 135 LETLSKLGSRERELVLFYCNLIDS-FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI-----SGLCEMGQPHEA 208 (425)
Q Consensus 135 ~~m~~~~~~~~~~~~~~y~~li~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~~~a 208 (425)
.-..+...... +. .-+.|-.. |.+.|+ + +.++-......... .-||.-. +.-..+|++++|
T Consensus 443 kv~~~kdnk~~-sa--aa~nl~~l~flqggk-~-~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka 509 (840)
T KOG2003|consen 443 KVFEKKDNKTA-SA--AANNLCALRFLQGGK-D-FADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKA 509 (840)
T ss_pred HHHHhccchhh-HH--HhhhhHHHHHHhccc-c-hhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHH
Confidence 88776533222 11 12233222 223332 1 22222222222111 1333211 112236899999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 209 ~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
.+.|++.....-.-....||+=+ .+-+.|++++|.+.|-.+..-= .-++.+.-.+...|-...+...|++++......
T Consensus 510 ~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl 587 (840)
T KOG2003|consen 510 AEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL 587 (840)
T ss_pred HHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc
Confidence 99999987753222233344333 4667899999999988765421 125666667777888888888899888665432
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhc-----cCCchhhHHHHHhhcc-------hhhHHHHHHHHhCCCCcccceeecc
Q 042756 289 GIPFSVRTYNSVLNSCSTIMSMLQDLN-----SNDFPLSILELTEVLN-------EEEVSVVKELEDSSVLDEAMKWDSG 356 (425)
Q Consensus 289 g~~pd~~t~~~ll~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l 356 (425)
+..|....+.|-..|-+.|+-.++++ -.-+++.++.+..++. .+.+-..++. ...+.|+.+-|..|
T Consensus 588 -ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek-aaliqp~~~kwqlm 665 (840)
T KOG2003|consen 588 -IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK-AALIQPNQSKWQLM 665 (840)
T ss_pred -CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH-HHhcCccHHHHHHH
Confidence 33466788888888888888777765 2234455554333322 1222222221 24456999999999
Q ss_pred ccch-hcccCcchhHHHHHHHHHHHHHhh
Q 042756 357 ETKL-DLHGMHLGSAYFIILQWMDEMRNR 384 (425)
Q Consensus 357 i~~~-~~~~~~~~a~~~~~~~~~~~m~~~ 384 (425)
|..| .+.|++.+| ++++++..+.
T Consensus 666 iasc~rrsgnyqka-----~d~yk~~hrk 689 (840)
T KOG2003|consen 666 IASCFRRSGNYQKA-----FDLYKDIHRK 689 (840)
T ss_pred HHHHHHhcccHHHH-----HHHHHHHHHh
Confidence 9655 567999999 9999999873
No 58
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.45 E-value=0.00012 Score=62.55 Aligned_cols=185 Identities=12% Similarity=0.068 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
+.--+--+|.+.|+...|.+-+++..+. +|+...+|..+-..|.+.|..+.+++.++...++.+.... +.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~----DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------VL 106 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH----DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------VL 106 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc------hh
Confidence 4555778899999999999999998875 4444557888999999999988888887777776554433 88
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
|..-..+|..|++++|...|++....---|. ..||..+--+..+.|+.+.|+..|+.-.+..-. ...+.-.+-.....
T Consensus 107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~ 185 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYK 185 (250)
T ss_pred hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHh
Confidence 9999999999999999999999988643332 458999988999999999999999988775321 34567778888889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 272 HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
.|++-.|..+++.....+. ++..+.-..|+---..|+
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd 222 (250)
T COG3063 186 AGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred cccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhcc
Confidence 9999999999999887765 776666655554444444
No 59
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=0.00013 Score=68.27 Aligned_cols=194 Identities=9% Similarity=-0.015 Sum_probs=106.4
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
++-+...-+....+.-...+++.|+++|+++.+.... .-+...+|+.++-.-..... +.-......+.- ...
T Consensus 258 f~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPY-Rl~dmdlySN~LYv~~~~sk---Ls~LA~~v~~id----KyR 329 (559)
T KOG1155|consen 258 FPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPY-RLDDMDLYSNVLYVKNDKSK---LSYLAQNVSNID----KYR 329 (559)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cchhHHHHhHHHHHHhhhHH---HHHHHHHHHHhc----cCC
Confidence 5444444444444455678999999999999876332 22334466665544332222 111112221111 111
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----------
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDG----------- 254 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g----------- 254 (425)
|- |+.++-+-|+-.++.|+|...|++..+.+ |. ...|+-|-.-|....+-..|.+-++...+-.
T Consensus 330 ~E--TCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLG 405 (559)
T KOG1155|consen 330 PE--TCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLG 405 (559)
T ss_pred cc--ceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhh
Confidence 21 66666666666666666666666666532 22 3344444444444444444444444433311
Q ss_pred ---------------------CCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042756 255 ---------------------TRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312 (425)
Q Consensus 255 ---------------------~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~ 312 (425)
++| |...|.+|-.+|.+.++.++|+++|++....| ..+...|..|-+.+-+.++..+
T Consensus 406 QaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e 484 (559)
T KOG1155|consen 406 QAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE 484 (559)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH
Confidence 122 67777777777777777777777777777655 2345666666666666666555
Q ss_pred h
Q 042756 313 D 313 (425)
Q Consensus 313 ~ 313 (425)
+
T Consensus 485 A 485 (559)
T KOG1155|consen 485 A 485 (559)
T ss_pred H
Confidence 4
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.44 E-value=0.00042 Score=64.07 Aligned_cols=230 Identities=11% Similarity=0.006 Sum_probs=143.7
Q ss_pred hhHHHHHHHHHHhHHh--cCCC--HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCcc
Q 042756 34 RLTKQGQRFLSSLALA--VTRD--SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~--~~~d--~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~ 109 (425)
+..+.+..-+.++... ..|+ ...|..+-..+...|..+.|...+.+.+ +.+ +-
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al---------------------~l~--P~ 96 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQAL---------------------ALR--PD 96 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------HcC--CC
Confidence 3455666667666654 2332 3556666666777776666655555543 322 13
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++..|+.+-..+...|++++|.+.|+...+. .|+...+|..+..++...|+++++.+.++...+. . |+.
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~----P~~ 165 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---D----PND 165 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---C----CCC
Confidence 6788999999999999999999999998764 2222346777888888899955544444444433 2 222
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CC--C-cCHHhHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD---GT--R-VDTVCSN 263 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~---g~--~-~~~~~yn 263 (425)
.........+...++.++|...|.+.... ..|+...+ .+ .....|+...+ +.+..+.+. .+ . .....|.
T Consensus 166 ~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 166 PYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 11222222344567899999999776543 23433222 22 23335655544 355555431 11 1 1346899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
.+-..+.+.|++++|...|++..+.. .||..-+...+--
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~~e 279 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYALLE 279 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHHHH
Confidence 99999999999999999999998764 3465555554433
No 61
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=5e-07 Score=53.70 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 222 (425)
+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 66666666666666666666666666666665
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.39 E-value=0.00057 Score=62.95 Aligned_cols=277 Identities=11% Similarity=-0.012 Sum_probs=188.9
Q ss_pred chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 89 ~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
|.+..|+++..+-.+.+. -....|-.-..+--+.|+.+.+-.++.+..+..+. +....+-+........|+...+
T Consensus 98 G~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~---~~l~v~ltrarlll~~~d~~aA 172 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD---DTLAVELTRARLLLNRRDYPAA 172 (400)
T ss_pred CcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC---chHHHHHHHHHHHHhCCCchhH
Confidence 377788888777544431 12334555556666779999999999998775222 2233566777778888997777
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHcCCCHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG-------FEYKCIIYGYGRLGLLE 241 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~~ll~~~~~~g~~~ 241 (425)
.+-...+.++.+... .+......+|.+.|++..+..+...|.+.|+--|. .+|+.++.-....+..+
T Consensus 173 ~~~v~~ll~~~pr~~------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 173 RENVDQLLEMTPRHP------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred HHHHHHHHHhCcCCh------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 777777777654442 38999999999999999999999999999865443 47888888888888888
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H-HHHHHHHHhhccCC
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS--C-STIMSMLQDLNSND 318 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~--~-~~~~~~~~~~~~~~ 318 (425)
.-...|+..... .+-+...--+++.-+.++|+.++|.++..+-.+.+..|...++---+.. . -.....++....++
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 777777776542 3446677778888999999999999999998888877762222111110 0 00122233333444
Q ss_pred chhhHH-HH----HhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 319 FPLSIL-EL----TEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 319 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
-.+.+. .+ .+-..-..+..+++ ..-...|+..+|+.+-.++.+.|+..+| .+.+++-..
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~le-aAl~~~~s~~~~~~la~~~~~~g~~~~A-----~~~r~e~L~ 389 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALE-AALKLRPSASDYAELADALDQLGEPEEA-----EQVRREALL 389 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHH-HHHhcCCChhhHHHHHHHHHHcCChHHH-----HHHHHHHHH
Confidence 444444 11 11111233443333 2333559999999999999999999999 888888765
No 63
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.34 E-value=8.4e-06 Score=61.39 Aligned_cols=81 Identities=17% Similarity=0.111 Sum_probs=60.0
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGT-RVDTVCSNMVLSSYGDHN--------ELSRMVLWLQKMKDSGIPFSVRT 296 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~yn~li~~~~~~g--------~~~~A~~l~~~M~~~g~~pd~~t 296 (425)
|-...|..+...+++.....+|+.++.+|+ .|+..+||.++.+.++.. ++-+.+.+|.+|...+++|+..|
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556666666788888888888888888 778888888887777543 24456778888888888888888
Q ss_pred HHHHHHHHHH
Q 042756 297 YNSVLNSCST 306 (425)
Q Consensus 297 ~~~ll~~~~~ 306 (425)
|+.++.++.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888887654
No 64
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.32 E-value=0.00076 Score=66.59 Aligned_cols=249 Identities=8% Similarity=-0.016 Sum_probs=164.5
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC------------------chhhh
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP------------------RLSSL 93 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~------------------~~~~~ 93 (425)
-.|..++|+++++.-...+.-...........+.+.|+.++|..++..++.++.... ...+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 356888999999775554555567777788888888999999998888876653211 12344
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChh-HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQRE-EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~-~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
...+|+++...- |.+.....+.-.+..-..+. .+.+.+..+..+|.| ++|+.|-..|......+-+.+.+
T Consensus 96 ~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP------slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 96 LLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP------SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred HHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc------hHHHHHHHHHcChhHHHHHHHHH
Confidence 455566554432 33322222222222212222 334444444445432 26777777777554433344444
Q ss_pred HHHHHHhhcCC---------CCccChhHH--HHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCH
Q 042756 173 ARLNQLVNSSS---------SVYVKRQAL--KSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLL 240 (425)
Q Consensus 173 ~~~~~~~~~~~---------~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~ 240 (425)
..+........ .-.|+...| .-+-..|-..|++++|+++.++..++ .|+ +.-|..--..+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence 44433332211 123555444 55677788999999999999999886 576 55888888899999999
Q ss_pred HHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 241 EDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 241 ~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
++|.+.++...+.... |...=+-.+..+.++|++++|.+++....+.+..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 9999999998887543 77777788888899999999999999988777644
No 65
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.25 E-value=1.1e-06 Score=50.89 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~ 290 (425)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777766653
No 66
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.25 E-value=0.00017 Score=66.66 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..|+.+-..+...|++++|.+.|++..+ +.|+ ..+|..+-.++...|++++|.+.|+...+.. |+..........
T Consensus 99 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l 174 (296)
T PRK11189 99 DAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYL 174 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 3666666666666666666666666665 2343 4455666666666666666666666665542 332211222222
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~ 286 (425)
+...++.++|...|.+..
T Consensus 175 ~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 175 AESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHccCCHHHHHHHHHHHH
Confidence 334556666666665543
No 67
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.25 E-value=1.6e-05 Score=75.71 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=103.1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
++..|.+......+........+++.+....+.+.+.+.+..++...... .+.|. |..++|+.|.+.|..++++.+.
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~-~~~~~--t~ha~vR~~l~~~~~~~~l~~L 126 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS-YLLPS--THHALVRQCLELGAEDELLELL 126 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc-cccCc--cHHHHHHHHHhcCCHHHHHHHH
Confidence 66666654333333333456778888777777555555555554443222 12233 6679999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
+.=...|+-||.+|||.+|+.+.+.|++..|.++...|...+...+..|+.--+.+|.+.
T Consensus 127 ~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 127 KNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999887777888888888877766
No 68
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.00014 Score=68.45 Aligned_cols=234 Identities=9% Similarity=-0.014 Sum_probs=158.6
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCH
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNP 111 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~ 111 (425)
+.|+...|.+-|+...+..+.+...|-.+-..|....+.++.+..|.....- +. -|+
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l---------------------dp--~n~ 394 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL---------------------DP--ENP 394 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc---------------------CC--CCC
Confidence 4556666777777777662223333777777777777777777666665432 21 255
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
.+|-.--..+.-.+++++|..=|++-.+- .|.....|--+-.+.-|.+. ..++...|.+.....+.+ ..+
T Consensus 395 dvYyHRgQm~flL~q~e~A~aDF~Kai~L----~pe~~~~~iQl~~a~Yr~~k---~~~~m~~Fee~kkkFP~~---~Ev 464 (606)
T KOG0547|consen 395 DVYYHRGQMRFLLQQYEEAIADFQKAISL----DPENAYAYIQLCCALYRQHK---IAESMKTFEEAKKKFPNC---PEV 464 (606)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHhhc----ChhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCCCC---chH
Confidence 56666666666778899999888887652 45545556556666667776 666777777666544322 249
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc-----CCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVK-----GLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~--p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~ 264 (425)
||..-..+...+++++|.+.|+...+. ++. +...+--.++-.- -.+++..|.+++....+..-+ ....|-.
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~t 542 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYET 542 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHH
Confidence 999999999999999999999998763 111 2222333333333 338999999999998876432 5688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
|-..-.+.|++++|+++|++-... ..|-.-++++|+
T Consensus 543 laq~~lQ~~~i~eAielFEksa~l-----Art~~E~~~a~s 578 (606)
T KOG0547|consen 543 LAQFELQRGKIDEAIELFEKSAQL-----ARTESEMVHAYS 578 (606)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH-----HHhHHHHHHHHH
Confidence 999999999999999999986532 234444555543
No 69
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.22 E-value=1.1e-05 Score=60.68 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCcCHHh
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGL-EPSGFEYKCIIYGYGRLG--------LLEDMERIVNQMESDGTRVDTVC 261 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g--------~~~~a~~~~~~m~~~g~~~~~~~ 261 (425)
|--..|..+...+++.....+|..+++.|+ .|+..+|+.++.+-+++. ++-....++++|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334456666667999999999999999999 899999999999988775 24557889999999999999999
Q ss_pred HHHHHHHHHhc
Q 042756 262 SNMVLSSYGDH 272 (425)
Q Consensus 262 yn~li~~~~~~ 272 (425)
||.++..+.+.
T Consensus 107 Ynivl~~Llkg 117 (120)
T PF08579_consen 107 YNIVLGSLLKG 117 (120)
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 70
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=7.3e-05 Score=73.58 Aligned_cols=249 Identities=12% Similarity=0.029 Sum_probs=167.1
Q ss_pred ccCCCCCCccccccccchhH-HHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCC
Q 042756 7 MRIPPPWNSRCCRLRQQRLT-LVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDT 85 (425)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~ 85 (425)
.|.|-++.+.-+...+.+.. .--.+.-|.++.|..+|+++. .|..+|.+|+..|...+|..+..+-+.
T Consensus 384 nRlsy~ya~~lpp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le--- 452 (777)
T KOG1128|consen 384 NRLSYIYAPHLPPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE--- 452 (777)
T ss_pred hcccccccCCCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc---
Confidence 44555554433333333222 233455689999999999964 588999999999977777666666442
Q ss_pred CCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCc
Q 042756 86 THPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165 (425)
Q Consensus 86 ~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~ 165 (425)
++ |++..|..+........-+++|.++++....+. . .++-....+.++
T Consensus 453 ------------------k~---~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA-------~---r~~~~~~~~~~~- 500 (777)
T KOG1128|consen 453 ------------------KD---PDPRLYCLLGDVLHDPSLYEKAWELSNYISARA-------Q---RSLALLILSNKD- 500 (777)
T ss_pred ------------------CC---CcchhHHHhhhhccChHHHHHHHHHhhhhhHHH-------H---Hhhccccccchh-
Confidence 22 678778777777777777888888888765430 0 111122223566
Q ss_pred ccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHH
Q 042756 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~ 244 (425)
+.++.+-++....-.+ ..+ .+|-..-.+..+.+++..|.+.|..-.. ..|| ...||++-.+|.+.|+-.+|.
T Consensus 501 --fs~~~~hle~sl~~np-lq~--~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 501 --FSEADKHLERSLEINP-LQL--GTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred --HHHHHHHHHHHhhcCc-cch--hHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4444444444332221 223 3888888889999999999999988776 4676 448999999999999999999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHH
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNSCST 306 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~~ 306 (425)
..+.+..+.. .-+...|..-+....+.|.+++|.+.+.+|.+.. -.-|......++....+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 9999888776 3466778888888889999999999988875421 11255555555554433
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.19 E-value=0.0014 Score=56.20 Aligned_cols=163 Identities=9% Similarity=0.001 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
.++..+-..|.+.|+.+.|.+-|++..+.... . -.+.|..---+|..|. .+++...|.+.+.......| ..+
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~---GdVLNNYG~FLC~qg~---~~eA~q~F~~Al~~P~Y~~~-s~t 141 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPN-N---GDVLNNYGAFLCAQGR---PEEAMQQFERALADPAYGEP-SDT 141 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-c---cchhhhhhHHHHhCCC---hHHHHHHHHHHHhCCCCCCc-chh
Confidence 34445555555555555555555554432111 0 1122333344444554 34444444444433222111 125
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
|..+.-+..+.|+++.|...|++-.+.. +-...+.-.+.....+.|++-.|..+++.....|. ++..+--..|..--+
T Consensus 142 ~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~ 219 (250)
T COG3063 142 LENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKR 219 (250)
T ss_pred hhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHH
Confidence 5555555555666666666666555531 11123455555555566666666666666555544 555555555555555
Q ss_pred cCCHHHHHHHHHH
Q 042756 272 HNELSRMVLWLQK 284 (425)
Q Consensus 272 ~g~~~~A~~l~~~ 284 (425)
.|+.+.|-+.=..
T Consensus 220 ~gd~~~a~~Y~~q 232 (250)
T COG3063 220 LGDRAAAQRYQAQ 232 (250)
T ss_pred hccHHHHHHHHHH
Confidence 6665555444333
No 72
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.16 E-value=2.2e-06 Score=49.61 Aligned_cols=30 Identities=47% Similarity=0.828 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGL 220 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 220 (425)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666666553
No 73
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.08 E-value=6.1e-05 Score=71.78 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=106.3
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
+......+++.+....+++++..++.+.+... ..--..|..++|..|.+.|..+.+..++..=..-||-||..+||.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 44577888888888899999999999998762 2223467789999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI 307 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~ 307 (425)
|+.+.+.|++..|.++..+|..++...+..|+.-.+.+|.+.
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999888888889999999998876
No 74
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0018 Score=62.36 Aligned_cols=247 Identities=9% Similarity=-0.061 Sum_probs=132.4
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccC
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWN 110 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~ 110 (425)
...+++++..++++.+.+..++....+..-|.++...|+..+.+.+=.+++... + -.
T Consensus 255 y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-----------------P------~~ 311 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-----------------P------SK 311 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-----------------C------CC
Confidence 344477777777777777756666666666777777776555544444443322 1 22
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
+.+|=++--.|.-.|..++|+..|.+-......-. ..|-.+-+.|+-.|.-|++-.++....+.++..+. |.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg----paWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl--P~-- 383 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG----PAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL--PS-- 383 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc----HHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc--hH--
Confidence 33344455556666777777777777554322211 13556666666666655555565555555544322 21
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----C--CCcCHHhHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----G--TRVDTVCSN 263 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g--~~~~~~~yn 263 (425)
.| +---|.+.++++.|.++|.+... +.| |+..++-+--.....+.+.+|..+|+.-... + ...-..+++
T Consensus 384 LY--lgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~ 459 (611)
T KOG1173|consen 384 LY--LGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLN 459 (611)
T ss_pred HH--HHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHH
Confidence 22 22234555666666666665543 333 4455555554455555666666666544311 0 001233455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.|-.+|.+.++.++|+..|+...... .-|..||.++--.|...|+++.+
T Consensus 460 NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~A 508 (611)
T KOG1173|consen 460 NLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKA 508 (611)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHH
Confidence 55566666666666666666554431 33555555555555555555554
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.02 E-value=0.0018 Score=57.73 Aligned_cols=174 Identities=11% Similarity=-0.048 Sum_probs=119.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.....+-.+...+.+.|++++|...|++....... .+.....+..+..++.+.|+++.+.+.++.+.+..+.....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~--- 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA--- 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---
Confidence 45666777888889999999999999998764322 22222345677788889999655555555555443322111
Q ss_pred hhHHHHHHHHHHhc--------CChhHHHHHHHHHHHcCCCCCHH-HH-----------------HHHHHHHHcCCCHHH
Q 042756 189 RQALKSMISGLCEM--------GQPHEAENLIEEMRVKGLEPSGF-EY-----------------KCIIYGYGRLGLLED 242 (425)
Q Consensus 189 ~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~~-ty-----------------~~ll~~~~~~g~~~~ 242 (425)
..++..+-.++.+. |+.++|.+.|+..... .|+.. .+ -.+-..+.+.|++++
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 11344444555543 7889999999999875 33321 11 134456788899999
Q ss_pred HHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 243 MERIVNQMESDG--TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 243 a~~~~~~m~~~g--~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
|...++...+.. -......+..+..++...|+.++|..+++.+...
T Consensus 185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999988752 1224578899999999999999999999888754
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.99 E-value=0.011 Score=58.51 Aligned_cols=271 Identities=11% Similarity=0.105 Sum_probs=175.8
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHhhhCCCCC--CCc----------h-hh
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASS-----PQFIALNALSHLLSPDTT--HPR----------L-SS 92 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~-----~~~~a~~~~~~~l~~~~~--~~~----------~-~~ 92 (425)
+..|+.++|..++..+...-+-|..-|..+..++.... .......++.+....... .+. . -.
T Consensus 49 ~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~ 128 (517)
T PF12569_consen 49 LKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKE 128 (517)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHH
Confidence 34479999999999998875555666666666663332 345566666665333211 111 1 22
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC-----------CCchhHH--HHHHHHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLG-----------SRERELV--LFYCNLIDSF 159 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~-----------~~~~~~~--~~y~~li~~~ 159 (425)
.+......+..+| + |+ +|+.|-..|......+-..+++..+..... ...++.. .++.-+-..|
T Consensus 129 ~~~~yl~~~l~Kg-v-Ps--lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 129 RLDEYLRPQLRKG-V-PS--LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHHHHHHhcC-C-ch--HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHH
Confidence 3444444555666 4 33 677787878766666667777777654311 0122222 2334445557
Q ss_pred HhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042756 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239 (425)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~ 239 (425)
-..|+ .+++++.+.+.+...+.. +..|-.-.+.|-..|++++|.+..+..+.... -|.+.-+...+.+.++|+
T Consensus 205 d~~g~---~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~ 277 (517)
T PF12569_consen 205 DYLGD---YEKALEYIDKAIEHTPTL---VELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGR 277 (517)
T ss_pred HHhCC---HHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCC
Confidence 78898 667888888777655322 34888888999999999999999999988643 378888999999999999
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhH--------HHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHH---HH
Q 042756 240 LEDMERIVNQMESDGTRVDTVCS--------NMVLSSYGDHNELSRMVLWLQKM-------KDSGIPFSVRTYNS---VL 301 (425)
Q Consensus 240 ~~~a~~~~~~m~~~g~~~~~~~y--------n~li~~~~~~g~~~~A~~l~~~M-------~~~g~~pd~~t~~~---ll 301 (425)
+++|.+++......+..|-...+ .-.-.+|.+.|++..|++-|... .+. +.|-++|.. .+
T Consensus 278 ~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~D--QfDFH~Yc~RK~t~ 355 (517)
T PF12569_consen 278 IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEED--QFDFHSYCLRKMTL 355 (517)
T ss_pred HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHhhccH
Confidence 99999999999887654432222 33457888999988887765554 333 445555531 34
Q ss_pred HHHHHHHHHHHhh
Q 042756 302 NSCSTIMSMLQDL 314 (425)
Q Consensus 302 ~~~~~~~~~~~~~ 314 (425)
++|...-++++.+
T Consensus 356 r~Y~~~L~~ed~l 368 (517)
T PF12569_consen 356 RAYVDMLRWEDKL 368 (517)
T ss_pred HHHHHHHHHHHHh
Confidence 5555555555543
No 77
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.99 E-value=6.2e-05 Score=63.93 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC----------------CHHHHHHH
Q 042756 223 SGFEYKCIIYGYGRL-----GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN----------------ELSRMVLW 281 (425)
Q Consensus 223 ~~~ty~~ll~~~~~~-----g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g----------------~~~~A~~l 281 (425)
|-.+|..+++.|.+. |.++-....+..|.+.|+..|..+||.|++.+=+.. +.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 455555555555433 455666666666666666666666666666554321 45678999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 282 LQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 282 ~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+++|...|+.||..|+..|++.+.+.+...+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K 157 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHPMKK 157 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999998776554443
No 78
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.95 E-value=0.0034 Score=64.15 Aligned_cols=244 Identities=10% Similarity=-0.001 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCC----CC-------------------CchhhhHHHHHHHhhhcCCCc
Q 042756 52 RDSKAASRLISKFVASSPQFIALNALSHLLSPDT----TH-------------------PRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 52 ~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~----~~-------------------~~~~~~a~~lf~~m~~~~~~~ 108 (425)
+-+...|.+-......|.+..|...|...+.... .. .+.++.|.+.|..+.+..
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--- 526 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--- 526 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC---
Confidence 5556666666666666777777777776655410 00 012445556666665543
Q ss_pred cCHHHHHHHHHHHHhc-------CChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc
Q 042756 109 WNPKLVAEIIAFLDKQ-------GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~-------g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (425)
|+- |.+|.+. +.+.+|...+.+....... .|+ .++.+-+.|.+...+..+.+-+....+....
T Consensus 527 p~Y------Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~---arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~ 596 (1018)
T KOG2002|consen 527 PGY------IDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPN---ARSLLGNLHLKKSEWKPAKKKFETILKKTST 596 (1018)
T ss_pred chh------HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcH---HHHHHHHHHHhhhhhcccccHHHHHHhhhcc
Confidence 332 2333322 4555666666665543222 222 3333444666655554455544444443322
Q ss_pred CCCCccChhHHHHHHHHHHh------------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 182 SSSVYVKRQALKSMISGLCE------------MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 182 ~~~~~p~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.+|..+.-+|-+.|.+ .+..++|+++|.+..... +-|.+.=|-+--.++..|++.+|..+|..
T Consensus 597 ----~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsq 671 (1018)
T KOG2002|consen 597 ----KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQ 671 (1018)
T ss_pred ----CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHH
Confidence 2454333334443322 246678888888877642 23566667777788899999999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK-MKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~-M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
..+... -+..+|-.+-++|+..|++..|++.|+. |.+..-.-+......|-+++-..|.+..++
T Consensus 672 VrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak 736 (1018)
T KOG2002|consen 672 VREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAK 736 (1018)
T ss_pred HHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHH
Confidence 988654 2456788899999999999999999997 455555667888888888888888776664
No 79
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.92 E-value=0.0053 Score=58.32 Aligned_cols=233 Identities=9% Similarity=-0.038 Sum_probs=129.9
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
.....|+.++|.+.++......+.|...+.. ...+...|.... ..+.+.+.+... ... ..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~-----------------~~~~~~~~l~~~-~~~-~~ 111 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSG-----------------MRDHVARVLPLW-APE-NP 111 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhccccc-----------------CchhHHHHHhcc-CcC-CC
Confidence 4455667777777777766653334433332 222222221111 222333333331 111 22
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
........+-..+...|++++|.+.+++..+.... ....+..+-..|...|+ .+++...+.+....... .|+
T Consensus 112 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~----~~~~~~~la~i~~~~g~---~~eA~~~l~~~l~~~~~-~~~ 183 (355)
T cd05804 112 DYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD----DAWAVHAVAHVLEMQGR---FKEGIAFMESWRDTWDC-SSM 183 (355)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHcCC---HHHHHHHHHhhhhccCC-Ccc
Confidence 23344455667788899999999999998875322 13356778888999999 45555555555443211 123
Q ss_pred --hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHcCCCHHHHHHH---HHHHHHCCC-CcC
Q 042756 189 --RQALKSMISGLCEMGQPHEAENLIEEMRVKGL-EPSGFEY-K--CIIYGYGRLGLLEDMERI---VNQMESDGT-RVD 258 (425)
Q Consensus 189 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~ty-~--~ll~~~~~~g~~~~a~~~---~~~m~~~g~-~~~ 258 (425)
...|-.+...+...|++++|.++|++...... .+..... + .++.-+-..|....+.+. ...-....- ...
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~ 263 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGL 263 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccc
Confidence 23566788899999999999999999864322 1222211 1 333334444543333322 222111100 111
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 259 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
....-....++...|+.++|..++..+....
T Consensus 264 ~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 264 AFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 2222356677788999999999999987643
No 80
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.90 E-value=0.00019 Score=65.74 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=40.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH-HHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL-SRMVLWL 282 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~-~~A~~l~ 282 (425)
.+.+|..+|+++.+. ..++..+.+.+..++...|++++|++++.+..+..- -+..+.-.+|-.....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 456666666665443 345555666666666666666666666655443321 1334444455554555544 4455555
Q ss_pred HHHHh
Q 042756 283 QKMKD 287 (425)
Q Consensus 283 ~~M~~ 287 (425)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 55543
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.89 E-value=0.011 Score=60.08 Aligned_cols=276 Identities=11% Similarity=0.039 Sum_probs=167.9
Q ss_pred hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHHHHHHH
Q 042756 34 RLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAFPLYMR 100 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~~lf~~ 100 (425)
|+...+...+-......+-|...|-.+-+-....|++..|.-.+.+.+.-.+..- |....|..-|.+
T Consensus 187 Gd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 187 GDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3555555544333222555889999999999999999999999988876554322 234556666776
Q ss_pred hhhcCC---CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 042756 101 ITEESW---FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177 (425)
Q Consensus 101 m~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~ 177 (425)
+..... +.+.....-.+++.|...++-+.|.+.++........ ......++.+...|.+....+.+.........
T Consensus 267 l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~--~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 267 LLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD--EASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc--cccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 655431 1112334445677788888888888888887662111 11112456777777776664433333333322
Q ss_pred ----------------------HhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 042756 178 ----------------------LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP--SGFEYKCIIYG 233 (425)
Q Consensus 178 ----------------------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~ 233 (425)
....+....++..++. ++-++...+..+...-+..-....++.| +..-|.-+.++
T Consensus 345 r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r-l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 345 RESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR-LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred cccCCChhhhhhhhhccccccccccCCCCCCccchhHh-HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 1111112222222311 2223333344444444444444555333 56688889999
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHH
Q 042756 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNSCSTIMSMLQ 312 (425)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~~~~~~~~ 312 (425)
|...|++++|..+|..+.+....-+...|--+-.+|...|..++|.+.|+..... .||.. .-.+|-+.+-+.|+.++
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ek 501 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEK 501 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHH
Confidence 9999999999999999988755557889999999999999999999999988753 45432 22223333455666666
Q ss_pred hh
Q 042756 313 DL 314 (425)
Q Consensus 313 ~~ 314 (425)
++
T Consensus 502 al 503 (895)
T KOG2076|consen 502 AL 503 (895)
T ss_pred HH
Confidence 64
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00065 Score=60.97 Aligned_cols=228 Identities=11% Similarity=0.015 Sum_probs=140.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH-
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK- 193 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 193 (425)
+-+-.+|.+.|...+|++.|+.-.+... .++ ||-.|-++|.+..+ -..++..+.+-.+ .+|-.+||-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~--~~d---TfllLskvY~ridQ---P~~AL~~~~~gld----~fP~~VT~l~ 294 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPD---TFLLLSKVYQRIDQ---PERALLVIGEGLD----SFPFDVTYLL 294 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC--chh---HHHHHHHHHHHhcc---HHHHHHHHhhhhh----cCCchhhhhh
Confidence 3467777888888888887777655322 222 67777788887777 3445555544433 334444443
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
-+-+.+-..++.++|.++|++..+.. .-++....++-..|.-.++.+-|..++.++.+.|+. +...|+.+--+|.-.+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 34455566678888888888776641 124456666677777778888888888888888875 7777888877777888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcccc
Q 042756 274 ELSRMVLWLQKMKDSGIPFSVRT--YNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~g~~pd~~t--~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (425)
++|-++..|.+...---.|+... |-.+=......|++-. +...+++.-..-.-+..
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nl----------------------A~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNL----------------------AKRCFRLALTSDAQHGE 430 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHH----------------------HHHHHHHHhccCcchHH
Confidence 88888887777665433444322 2222111122222211 11122222111112345
Q ss_pred eeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 352 KWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 352 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+|.|----.+.|+.++| ..+++....
T Consensus 431 alnNLavL~~r~G~i~~A-----rsll~~A~s 457 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGA-----RSLLNAAKS 457 (478)
T ss_pred HHHhHHHHHhhcCchHHH-----HHHHHHhhh
Confidence 666666666788999999 888888765
No 83
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.88 E-value=0.033 Score=54.94 Aligned_cols=330 Identities=9% Similarity=-0.038 Sum_probs=210.0
Q ss_pred HHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCc------hhhhHHH------------H
Q 042756 36 TKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPR------LSSLAFP------------L 97 (425)
Q Consensus 36 ~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~------~~~~a~~------------l 97 (425)
.+.|..+++..++.++.|...|.+--..=-..|+.+...+++.+.+..-..... -+.+|.. +
T Consensus 422 YenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAI 501 (913)
T KOG0495|consen 422 YENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAI 501 (913)
T ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHH
Confidence 344667777777667777888877666666678888888777776433111100 0112221 1
Q ss_pred HHHhhhcCCC-ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 98 YMRITEESWF-QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 98 f~~m~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
......-+.- .---.++..--..|.+.+.++-|+.+|....+-.. ...+.|......=-..|..+.++..++...
T Consensus 502 i~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp----~k~slWlra~~~ek~hgt~Esl~Allqkav 577 (913)
T KOG0495|consen 502 IRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP----CKKSLWLRAAMFEKSHGTRESLEALLQKAV 577 (913)
T ss_pred HHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 1111111100 00123566666777788888888888888776422 222356555555555677554444444443
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
...+. ....|--..+-+..+|+...|..++.+.-+.+-. +...|-..++.-..+..++.|..+|..-.. ..
T Consensus 578 ~~~pk------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~s 648 (913)
T KOG0495|consen 578 EQCPK------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--IS 648 (913)
T ss_pred HhCCc------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cC
Confidence 33222 2237777778888899999999999999886422 567888899999999999999999998766 45
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHHhhc---------cCCchhhHHHH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNSCSTIMSMLQDLN---------SNDFPLSILEL 326 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~~~~~~~~~~~~---------~~~~~~~~~~~ 326 (425)
|+...|.--+...--.|+.++|.+++++-.+. -|+.. .|-.+=+.+-+.++++.+.. +++.+.++. +
T Consensus 649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll-L 725 (913)
T KOG0495|consen 649 GTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL-L 725 (913)
T ss_pred CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH-H
Confidence 78888888888888889999999999887764 56664 44444455666677766632 333333333 2
Q ss_pred Hhhcch-hhHHHHHHHHhC---CCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhcc
Q 042756 327 TEVLNE-EEVSVVKELEDS---SVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFN 386 (425)
Q Consensus 327 ~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~ 386 (425)
.+.-.. .....+..++++ ....|...|-..|+.=.+.|+.+.| ..+..+..+.++
T Consensus 726 akleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a-----~~lmakALQecp 784 (913)
T KOG0495|consen 726 AKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQA-----ELLMAKALQECP 784 (913)
T ss_pred HHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHH-----HHHHHHHHHhCC
Confidence 222221 122233344433 3335678899999999999999999 777777766444
No 84
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.88 E-value=0.0039 Score=59.07 Aligned_cols=222 Identities=9% Similarity=0.040 Sum_probs=148.7
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc
Q 042756 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 202 (425)
-.|+.-+|.+-|+...+-...+ +..|--+-.+|....+.+.....+....+.-+.. || +|..--..+.-.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~----~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n----~d--vYyHRgQm~flL 407 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF----NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPEN----PD--VYYHRGQMRFLL 407 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc----chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCC----Cc--hhHhHHHHHHHH
Confidence 4588889999999987642221 2225556667777777444444444443333222 44 888777777778
Q ss_pred CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 042756 203 GQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l 281 (425)
+++++|..=|++..+ +.| +++.|..+-.+.-|.+.+++++..|++.+++ ++.-..+||-.-..+...++++.|.+-
T Consensus 408 ~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 408 QQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 899999999998877 455 4678888888889999999999999998875 444588999999999999999999999
Q ss_pred HHHHHhCCCCCCHH-HHHHHHHHHHHHHHHHHhhccCCchhhHH-HHHhhcchhhHHHHHHHHhCCCCccc---ceeecc
Q 042756 282 LQKMKDSGIPFSVR-TYNSVLNSCSTIMSMLQDLNSNDFPLSIL-ELTEVLNEEEVSVVKELEDSSVLDEA---MKWDSG 356 (425)
Q Consensus 282 ~~~M~~~g~~pd~~-t~~~ll~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l 356 (425)
|+..++. .|+.. ++... .++++ ++.-....++.....+++.+-+..|. ..|..|
T Consensus 485 YD~ai~L--E~~~~~~~v~~-------------------~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 485 YDKAIEL--EPREHLIIVNA-------------------APLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHhh--ccccccccccc-------------------hhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 9997653 33311 11110 01111 00001112334444455544444443 467788
Q ss_pred ccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 357 ETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 357 i~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
-.--...|+.++| +++|++-..
T Consensus 544 aq~~lQ~~~i~eA-----ielFEksa~ 565 (606)
T KOG0547|consen 544 AQFELQRGKIDEA-----IELFEKSAQ 565 (606)
T ss_pred HHHHHHHhhHHHH-----HHHHHHHHH
Confidence 8888899999999 999987644
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.87 E-value=0.011 Score=56.21 Aligned_cols=160 Identities=11% Similarity=-0.038 Sum_probs=105.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHhhcCCCCccCh-hHHHHHH
Q 042756 119 AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-FDDTYARLNQLVNSSSSVYVKR-QALKSMI 196 (425)
Q Consensus 119 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~p~~-~~~~~li 196 (425)
..+...|++++|.+++++..+.. |.. ...+.. ...+...|+..+ ...+...+... . ...|+. .....+-
T Consensus 51 ~~~~~~g~~~~A~~~~~~~l~~~--P~~--~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~-~---~~~~~~~~~~~~~a 121 (355)
T cd05804 51 LSAWIAGDLPKALALLEQLLDDY--PRD--LLALKL-HLGAFGLGDFSGMRDHVARVLPLW-A---PENPDYWYLLGMLA 121 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCc--HHHHHH-hHHHHHhcccccCchhHHHHHhcc-C---cCCCCcHHHHHHHH
Confidence 34566799999999999987652 121 122332 223333333221 22222222221 1 122332 3444555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-CcC--HHhHHHHHHHHHhcC
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT-RVD--TVCSNMVLSSYGDHN 273 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~-~~~--~~~yn~li~~~~~~g 273 (425)
..+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...++......- .|+ ...|..+...+...|
T Consensus 122 ~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G 200 (355)
T cd05804 122 FGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG 200 (355)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence 67888999999999999999863 33466788888999999999999999998776421 233 245667888999999
Q ss_pred CHHHHHHHHHHHHhC
Q 042756 274 ELSRMVLWLQKMKDS 288 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~ 288 (425)
++++|..+|++....
T Consensus 201 ~~~~A~~~~~~~~~~ 215 (355)
T cd05804 201 DYEAALAIYDTHIAP 215 (355)
T ss_pred CHHHHHHHHHHHhcc
Confidence 999999999998643
No 86
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.86 E-value=0.0076 Score=61.71 Aligned_cols=247 Identities=13% Similarity=0.044 Sum_probs=159.8
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCch-------------hhhHHHHHHHh
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRL-------------SSLAFPLYMRI 101 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~-------------~~~a~~lf~~m 101 (425)
.+..|.+.+..+.+..+-=+..|-.+....-..++...|...+.+.+.-+...|.. +..|.+-|..+
T Consensus 511 ~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 511 DTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 56667788888877633334445555422233467888999998888766655531 22344444444
Q ss_pred hhcCCCccCHHHHHHHHHHHHh------------cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 102 TEESWFQWNPKLVAEIIAFLDK------------QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~~------------~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
..+....+|+++.-.|-+.|.+ .+..++|+++|.+..+. .|.+...-|=+-..++..|++..+.
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~----dpkN~yAANGIgiVLA~kg~~~~A~ 666 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN----DPKNMYAANGIGIVLAEKGRFSEAR 666 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc----CcchhhhccchhhhhhhccCchHHH
Confidence 3332233455554445454432 24467788888887653 3332333344666677888876666
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
++|..+++..... +| +|=.+-++|...|++..|+++|+...+. .-.-+..+.+.|-.++-++|.+.+|.+..-
T Consensus 667 dIFsqVrEa~~~~----~d--v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll 740 (1018)
T KOG2002|consen 667 DIFSQVREATSDF----ED--VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALL 740 (1018)
T ss_pred HHHHHHHHHHhhC----Cc--eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6666666655432 22 8889999999999999999999987765 444567788999999999999999988877
Q ss_pred HHHHCCCCcCHHhHHHHHHHH------------------HhcCCHHHHHHHHHHHHhCCCC
Q 042756 249 QMESDGTRVDTVCSNMVLSSY------------------GDHNELSRMVLWLQKMKDSGIP 291 (425)
Q Consensus 249 ~m~~~g~~~~~~~yn~li~~~------------------~~~g~~~~A~~l~~~M~~~g~~ 291 (425)
........-..+-||..+-.. ...+..+.|.++|.+|...+-.
T Consensus 741 ~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 741 KARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666554444556777665433 1133567788899999876543
No 87
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0092 Score=57.62 Aligned_cols=263 Identities=13% Similarity=0.010 Sum_probs=166.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+.+..++++.+.+.+.+ +...+..=|.++...|+..+-..+=.++.+... +...+|=++-..|-..|....++
T Consensus 259 ~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP----~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 259 RFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP----SKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred hHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhCC----CCCcchhhHHHHHHHhcCcHHHH
Confidence 456667777776665544 444455556677777777666655556655422 22234556666666667755555
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHcCCCHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK--GL-EPSGFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p~~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
..+..-..+-+. ..| .|=..-.+|+-.|+.|.|+..+...-+. |. .| .-|..+ -|.+.+.++.|.++
T Consensus 333 ry~SKat~lD~~---fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP--~LYlgm--ey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 333 RYFSKATTLDPT---FGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP--SLYLGM--EYMRTNNLKLAEKF 402 (611)
T ss_pred HHHHHHhhcCcc---ccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch--HHHHHH--HHHHhccHHHHHHH
Confidence 555544444222 223 7778888888888888888877766543 32 23 233332 47788899999999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCC----CCHHHHHHHHHHHHHHHHHHHhhccCCch
Q 042756 247 VNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD--SGIP----FSVRTYNSVLNSCSTIMSMLQDLNSNDFP 320 (425)
Q Consensus 247 ~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~--~g~~----pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 320 (425)
|.+..... +-|+...|-+--.....+.+.+|..+|..-.. ..+. ....|++.|-.+|.+.+..+.+
T Consensus 403 f~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA------- 474 (611)
T KOG1173|consen 403 FKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA------- 474 (611)
T ss_pred HHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH-------
Confidence 98765532 23667777776666778889999999988652 1111 1334566666666666655433
Q ss_pred hhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeee
Q 042756 321 LSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVC 400 (425)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~ 400 (425)
....+-.-.....+..++.++--.|...|+++.| ++.|.+.. .+.||..+.+.
T Consensus 475 ---------------I~~~q~aL~l~~k~~~~~asig~iy~llgnld~A-----id~fhKaL-------~l~p~n~~~~~ 527 (611)
T KOG1173|consen 475 ---------------IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKA-----IDHFHKAL-------ALKPDNIFISE 527 (611)
T ss_pred ---------------HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHH-----HHHHHHHH-------hcCCccHHHHH
Confidence 2222333334456778888888889999999999 99999865 47888877776
Q ss_pred ccc
Q 042756 401 GSG 403 (425)
Q Consensus 401 l~~ 403 (425)
+++
T Consensus 528 lL~ 530 (611)
T KOG1173|consen 528 LLK 530 (611)
T ss_pred HHH
Confidence 664
No 88
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.83 E-value=0.00024 Score=60.40 Aligned_cols=88 Identities=17% Similarity=0.212 Sum_probs=73.9
Q ss_pred ChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC----------------CHHHHHHH
Q 042756 188 KRQALKSMISGLCE-----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG----------------LLEDMERI 246 (425)
Q Consensus 188 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g----------------~~~~a~~~ 246 (425)
|..+|..+|..|.+ .|..+-....++.|.+-|+.-|..+|+.||+.+=+.. +-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 33477777777765 4788999999999999999999999999999976532 24669999
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 247 VNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 247 ~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
+++|+..|+.||..|+..|+..|.+.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999877753
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.80 E-value=0.007 Score=64.20 Aligned_cols=210 Identities=10% Similarity=0.006 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+...|-.-+.-....+..++|.++..+.|..-.. .++. + --.+|.++++.-...|.-+...+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~----REee--------E------KLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINF----REEE--------E------KLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCc----chhH--------H------HHHHHHHHHhHHHhhCcHHHHHH
Confidence 3455666666666666666666666665532210 0000 0 11245556666666777888889
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
+|++.++-. ++ ..+|..|..-|.+....+.+.+.++.+.+.-... ..+|...+.++.+..+-+.|.+++
T Consensus 1519 VFeRAcqyc---d~--~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~vW~~y~~fLl~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1519 VFERACQYC---DA--YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RKVWIMYADFLLRQNEAEAARELL 1587 (1710)
T ss_pred HHHHHHHhc---ch--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hhHHHHHHHHHhcccHHHHHHHHH
Confidence 999988742 21 2378899999999999766666666665554322 239999999999999999999999
Q ss_pred HHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 213 EEMRVKGLEPS---GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 213 ~~m~~~g~~p~---~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
.+..+. -|- ..........-.+.||.+.+..+|+.....-- --...|+..|+.=.++|+.+.+..+|++.+..+
T Consensus 1588 ~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1588 KRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 998874 343 33455556667889999999999998887532 256789999999999999999999999999998
Q ss_pred CCCCH
Q 042756 290 IPFSV 294 (425)
Q Consensus 290 ~~pd~ 294 (425)
+.|-.
T Consensus 1665 l~~kk 1669 (1710)
T KOG1070|consen 1665 LSIKK 1669 (1710)
T ss_pred CChhH
Confidence 87743
No 90
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.019 Score=59.20 Aligned_cols=144 Identities=14% Similarity=0.109 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
+|+.+-.+=.+.|. +.++.+-+-+.- |...|--+|....+.|.+|+-.+++...+++.-+|. .=+.+
T Consensus 1106 vWsqlakAQL~~~~---v~dAieSyikad--------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~--id~eL 1172 (1666)
T KOG0985|consen 1106 VWSQLAKAQLQGGL---VKDAIESYIKAD--------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPY--IDSEL 1172 (1666)
T ss_pred HHHHHHHHHHhcCc---hHHHHHHHHhcC--------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCcc--chHHH
Confidence 57777777777776 455555443321 223888888888888888888888877777766664 44577
Q ss_pred HHHHHcCCCHHHHHHHHHH------------HHHCC-------CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042756 231 IYGYGRLGLLEDMERIVNQ------------MESDG-------TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~------------m~~~g-------~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~ 291 (425)
|-+|++.+++.+.+++..- .-+.| +-.++.-|..|...++..|++..|...-++.-
T Consensus 1173 i~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAn----- 1247 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKAN----- 1247 (1666)
T ss_pred HHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 8888888887776655421 00111 01144556777777788888888776655432
Q ss_pred CCHHHHHHHHHHHHHHHHHHHh
Q 042756 292 FSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 292 pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+..||.-+-.+|...+.+..+
T Consensus 1248 -s~ktWK~VcfaCvd~~EFrlA 1268 (1666)
T KOG0985|consen 1248 -STKTWKEVCFACVDKEEFRLA 1268 (1666)
T ss_pred -chhHHHHHHHHHhchhhhhHH
Confidence 667888888888887766655
No 91
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.78 E-value=0.048 Score=53.74 Aligned_cols=344 Identities=12% Similarity=0.093 Sum_probs=192.4
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhh----HHHHHHHhhh-------
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL----AFPLYMRITE------- 103 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~----a~~lf~~m~~------- 103 (425)
..+.+.+++++.++ .++..-+.-|.-+++.++.++|-..+.+.+.++...+..... ..++++-+.+
T Consensus 153 lPets~rvyrRYLk---~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 153 LPETSIRVYRRYLK---VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred ChHHHHHHHHHHHh---cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 44556666666653 555567888888999999999999999988765443322111 2222222111
Q ss_pred --------cCCCc-cC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh-----------
Q 042756 104 --------ESWFQ-WN--PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----------- 161 (425)
Q Consensus 104 --------~~~~~-~~--~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----------- 161 (425)
.|.-. +| ...|++|...|.+.|.+++|..+|++-.+.-.. .++ |+.+.++|..
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~t-vrD----Ft~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMT-VRD----FTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhee-hhh----HHHHHHHHHHHHHHHHHHHHh
Confidence 11000 11 136888999999999999999999997653221 222 3334444432
Q ss_pred -----cCCc---ccHHHHHHHHHHHhhcCCCCc---------cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CC
Q 042756 162 -----HDSK---RGFDDTYARLNQLVNSSSSVY---------VKRQALKSMISGLCEMGQPHEAENLIEEMRVKG---LE 221 (425)
Q Consensus 162 -----~g~~---~~~~~~~~~~~~~~~~~~~~~---------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~ 221 (425)
.|+. .+++-.+..+...+...+... -++..|..-++ +..|+..+...+|.+....- ..
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka 382 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKA 382 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccC
Confidence 1111 112333444444444332110 01223333333 33677788888888877541 11
Q ss_pred C-C-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------
Q 042756 222 P-S-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD---TVCSNMVLSSYGDHNELSRMVLWLQKMKDS-------- 288 (425)
Q Consensus 222 p-~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-------- 288 (425)
| . ..-|..+-+.|-..|+++.|..+|+.-.+-.++.- ..+|......=.++.+++.|+++.++....
T Consensus 383 ~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~ 462 (835)
T KOG2047|consen 383 VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEY 462 (835)
T ss_pred CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhh
Confidence 1 1 23567777888888888888888888776544332 567777777777888888888887775421
Q ss_pred --CCCC-------CHHHHHHHHHHHHHHHHHHHhhc--------cCCchhhHHHHHhhcc-hhhHHHHHHHHhCCCC---
Q 042756 289 --GIPF-------SVRTYNSVLNSCSTIMSMLQDLN--------SNDFPLSILELTEVLN-EEEVSVVKELEDSSVL--- 347 (425)
Q Consensus 289 --g~~p-------d~~t~~~ll~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 347 (425)
|-.| +...|+..++---..|-++.... .-.-+.++..|..... ..--+..++..++|+.
T Consensus 463 yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 463 YDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred hcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 1112 23344444443222222222210 0011112222333322 2233345666788876
Q ss_pred -ccc-ceeeccccchhcc---cCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeee
Q 042756 348 -DEA-MKWDSGETKLDLH---GMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVV 399 (425)
Q Consensus 348 -~~~-~~~~~li~~~~~~---~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~ 399 (425)
|++ ..||..+..+.+. ..++.| .++|++..+ |..|...-+.
T Consensus 543 ~p~v~diW~tYLtkfi~rygg~klEra-----RdLFEqaL~------~Cpp~~aKti 588 (835)
T KOG2047|consen 543 WPNVYDIWNTYLTKFIKRYGGTKLERA-----RDLFEQALD------GCPPEHAKTI 588 (835)
T ss_pred CccHHHHHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHh------cCCHHHHHHH
Confidence 554 3688887776653 356677 899999885 6767665444
No 92
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.037 Score=51.64 Aligned_cols=263 Identities=9% Similarity=-0.040 Sum_probs=134.8
Q ss_pred HhhHHHHHHHHHHhHHh--cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcC-CCc-
Q 042756 33 ARLTKQGQRFLSSLALA--VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES-WFQ- 108 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~--~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~-~~~- 108 (425)
.+.-..|.+.+-.+... ++-|......+-+.+...|+...+...|.+..+-+. ..-+++++|-.+.... ...
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp----y~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP----DNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh----hhhhhHHHHHHHHHhccCHhh
Confidence 34334444444333333 888999999999999999999999999999866543 2223333333322211 010
Q ss_pred -------------cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 109 -------------WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 109 -------------~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
.+..-|-.-.......++++.|+.+-++-.+. .++. +..|-.--+++...++. .++.-.|
T Consensus 285 ~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~---~~r~-~~alilKG~lL~~~~R~---~~A~IaF 357 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDS---EPRN-HEALILKGRLLIALERH---TQAVIAF 357 (564)
T ss_pred HHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc---Cccc-chHHHhccHHHHhccch---HHHHHHH
Confidence 01111111122223345677777666554432 1221 22232222345566774 4444444
Q ss_pred HHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHcCCC-HHHHHHHHHHHHHC
Q 042756 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI-IYGYGRLGL-LEDMERIVNQMESD 253 (425)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l-l~~~~~~g~-~~~a~~~~~~m~~~ 253 (425)
+....-. .-+..+|..|+.+|...|++.+|.-+-+.-... +.-+..+.+-+ -..|.-.-. -++|.++++.-...
T Consensus 358 R~Aq~La---p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~ 433 (564)
T KOG1174|consen 358 RTAQMLA---PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI 433 (564)
T ss_pred HHHHhcc---hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc
Confidence 4433211 013358999999999999988887665544321 11233333332 122222211 24455555543322
Q ss_pred CCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 254 GTRVD-TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 254 g~~~~-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
.|+ ...-+.+...+...|..+.++.++++-... .||..-.+.|-+.+.....+.++|
T Consensus 434 --~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 434 --NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred --CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHH
Confidence 333 333444555555666666666666665432 566666666666655555554444
No 93
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.66 E-value=0.055 Score=55.25 Aligned_cols=240 Identities=14% Similarity=0.068 Sum_probs=155.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhc--CChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 27 LVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~--~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
+|..+-.+.++.|.+..+.+.++ .|+. .|..++.++... |+.++|+..++. ....
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk-~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~---------------------~~~~ 72 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKK-HPNA-LYAKVLKALSLFRLGKGDEALKLLEA---------------------LYGL 72 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHH-CCCc-HHHHHHHHHHHHHhcCchhHHHHHhh---------------------hccC
Confidence 89999999999999999998876 4443 366777777654 555555544433 3333
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (425)
. .. |..|...+-..|-+.|+.++|..+|++..+.... . . --..+..+|.|.+.+....++.-.+.+..++...
T Consensus 73 ~-~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e-e---ll~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 73 K-GT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E-E---LLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred C-CC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 2 22 7778888999999999999999999999876433 2 1 2346778888888876666655555554444322
Q ss_pred CccChhHHHHHHHHHHhcC----------ChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHH-HHHH
Q 042756 185 VYVKRQALKSMISGLCEMG----------QPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVN-QMES 252 (425)
Q Consensus 185 ~~p~~~~~~~li~~~~~~g----------~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~a~~~~~-~m~~ 252 (425)
.+=++|+-....- -..-|.+.++.+.+.+ -.-+..-.---+...-..|++++|..++. ..-+
T Consensus 146 ------yfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~ 219 (932)
T KOG2053|consen 146 ------YFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE 219 (932)
T ss_pred ------hHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 4444555554431 1234556666666554 21222222222344556788999999994 4444
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
.-..-+...-|--++.+...+++.+..++-.+....| +|. |.+.++++++
T Consensus 220 ~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~k 269 (932)
T KOG2053|consen 220 KLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFK 269 (932)
T ss_pred hccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHH
Confidence 4444456666677888889999999999888888775 343 5555554444
No 94
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.61 E-value=0.056 Score=51.38 Aligned_cols=184 Identities=13% Similarity=0.026 Sum_probs=139.2
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+..|.++|++...-+ . -+...|---+.+=.+..++..|..+++..... .++... .|-..+..=-..|+..++.
T Consensus 88 e~~RARSv~ERALdvd-~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdq-lWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD-Y-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQ-LWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHhcc-c-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHH-HHHHHHHHHHHhcccHHHH
Confidence 4567888888876655 2 25556666777778889999999999997764 222222 3445555556678877777
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
++++..-+ ..||...|++.|+.=.+-.+++.|..++++..- +.|+..+|--...---+.|.+..|..+|+.
T Consensus 162 qiferW~~-------w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 162 QIFERWME-------WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HHHHHHHc-------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 77776654 779999999999999999999999999999987 679999999999999999999999999998
Q ss_pred HHHC-CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 250 MESD-GT-RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 250 m~~~-g~-~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
..+. |- .-+...|++...-=.++..++.|.-+|+-..+.
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7653 21 123455555555556778888998888887754
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.057 Score=50.47 Aligned_cols=267 Identities=9% Similarity=-0.032 Sum_probs=165.1
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 96 PLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 96 ~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
..|--......++.|......+-..+...|+.+.|+..|++.... +|.+...-...--.+.+.|+.+........+
T Consensus 217 ~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~L 292 (564)
T KOG1174|consen 217 QTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----NPDNVEAMDLYAVLLGQEGGCEQDSALMDYL 292 (564)
T ss_pred hHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----ChhhhhhHHHHHHHHHhccCHhhHHHHHHHH
Confidence 333333333457789999999999999999999999999997643 3322211111222345677766666666666
Q ss_pred HHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 176 NQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 176 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
+...... ...|-+-.......++++.|+.+-++..+.+ |+ ...|-.=-.++...|++++|.--|+..+...
T Consensus 293 f~~~~~t------a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La 364 (564)
T KOG1174|consen 293 FAKVKYT------ASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA 364 (564)
T ss_pred Hhhhhcc------hhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence 6653222 2367777777788899999999998887642 22 2233222345677899999999999877642
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHH-------HHHHH-HHhhc-cCCchhhHH
Q 042756 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV-LNSCS-------TIMSM-LQDLN-SNDFPLSIL 324 (425)
Q Consensus 255 ~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l-l~~~~-------~~~~~-~~~~~-~~~~~~~~~ 324 (425)
+.+..+|.-|+.+|...|++.||.-+-+..... +.-+..|...+ ...|. +...+ ++++. .++|.+.+.
T Consensus 365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~ 442 (564)
T KOG1174|consen 365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN 442 (564)
T ss_pred -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH
Confidence 247899999999999999999998876664321 12233333333 11111 12222 22332 666766665
Q ss_pred HHHhh---cc--hhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 325 ELTEV---LN--EEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 325 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+..+ .+ .+....++.-+. ..||...-+.|-.-+.-.+.+.+| ++.|....+
T Consensus 443 ~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~a-----m~~y~~ALr 499 (564)
T KOG1174|consen 443 LIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKA-----MEYYYKALR 499 (564)
T ss_pred HHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHH-----HHHHHHHHh
Confidence 33222 22 233333444333 237777777777777777778887 777766554
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=0.058 Score=49.39 Aligned_cols=48 Identities=8% Similarity=-0.013 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHHHHHHHHh
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVL-NSCSTIMSMLQD 313 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll-~~~~~~~~~~~~ 313 (425)
+..+++..|.+.+|+++|-......++ |..+|-+++ ++|.+.+....+
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 456667788888888888776544443 555665554 445555554444
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.59 E-value=0.0067 Score=49.46 Aligned_cols=104 Identities=6% Similarity=-0.191 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.+...-.++...|++++|...|++..... +.+...|..+-.++.+.|++++|...|+...... ..+...+..+-.++.
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 35567778889999999999999988752 3367789999999999999999999999999864 347889999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042756 271 DHNELSRMVLWLQKMKDSGIPFSVRTYN 298 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 298 (425)
..|+.++|...|+...+. .|+...+.
T Consensus 104 ~~g~~~eAi~~~~~Al~~--~p~~~~~~ 129 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKM--SYADASWS 129 (144)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 999999999999998764 56554443
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.56 E-value=0.012 Score=50.80 Aligned_cols=163 Identities=7% Similarity=-0.017 Sum_probs=115.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
-+..|...|+++.+..-.+.+.. +.. .|+ ..++ .+++...+.+..... ..|...|..+-
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~----~~~----~~~-------~~~~---~~~~i~~l~~~L~~~---P~~~~~w~~Lg 80 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLAD----PLH----QFA-------SQQT---PEAQLQALQDKIRAN---PQNSEQWALLG 80 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhC----ccc----ccc-------Cchh---HHHHHHHHHHHHHHC---CCCHHHHHHHH
Confidence 45678888998887554422211 110 111 1233 455555555554433 13556999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHcCCC--HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYG-YGRLGL--LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~-~~~~g~--~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
..|...|++++|...|++.... .| +...+..+-.+ +...|+ .++|.+++++..+..-. +...+..+-..+...
T Consensus 81 ~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~ 157 (198)
T PRK10370 81 EYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHc
Confidence 9999999999999999998885 45 56677777776 467777 59999999999987543 778899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
|++++|+..|+++.+.. .|+..-+..+ .+-.
T Consensus 158 g~~~~Ai~~~~~aL~l~-~~~~~r~~~i-~~i~ 188 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN-SPRVNRTQLV-ESIN 188 (198)
T ss_pred CCHHHHHHHHHHHHhhC-CCCccHHHHH-HHHH
Confidence 99999999999998763 5666555444 6533
No 99
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.55 E-value=0.0038 Score=50.09 Aligned_cols=110 Identities=10% Similarity=-0.053 Sum_probs=88.1
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.....+...+.+.|++++|.+.|+.....+ ..+...+..+-..+.+.|++++|..+++...+.+ +.+...|..+-..|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 356677788888999999999999988753 3367788888999999999999999999887764 34677788888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
...|+.++|...|++..+. .|+...+..+..-
T Consensus 96 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~ 127 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI--CGENPEYSELKER 127 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh--ccccchHHHHHHH
Confidence 9999999999999988764 5776665555443
No 100
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.53 E-value=0.053 Score=57.96 Aligned_cols=220 Identities=10% Similarity=0.064 Sum_probs=151.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHhcCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHH
Q 042756 26 TLVQCLTARLTKQGQRFLSSLALAVTRD-----SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMR 100 (425)
Q Consensus 26 ~~~~~l~~~~~~~a~~~~~~m~~~~~~d-----~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~ 100 (425)
++..-+..+..+.|++++++.+..+.+. .-.|.++++.-.-.|+. +...++|++
T Consensus 1464 YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~e---------------------esl~kVFeR 1522 (1710)
T KOG1070|consen 1464 YMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTE---------------------ESLKKVFER 1522 (1710)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcH---------------------HHHHHHHHH
Confidence 3455567778888999999988763322 23344444444433432 345556666
Q ss_pred hhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 042756 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180 (425)
Q Consensus 101 m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~ 180 (425)
..+-. -.-.+|..|...|.+.+.+++|-++|+.|.++-+. .+ .+|...+..+.+..+ ++++-.++.+.+.
T Consensus 1523 Acqyc---d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q-~~---~vW~~y~~fLl~~ne---~~aa~~lL~rAL~ 1592 (1710)
T KOG1070|consen 1523 ACQYC---DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQ-TR---KVWIMYADFLLRQNE---AEAARELLKRALK 1592 (1710)
T ss_pred HHHhc---chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcc-hh---hHHHHHHHHHhcccH---HHHHHHHHHHHHh
Confidence 55432 12346889999999999999999999999998662 32 378889999998887 5555555555543
Q ss_pred cCCCCccCh---hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 181 SSSSVYVKR---QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 181 ~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
.- |.. ..-.-.+..=.+.|+.+.+..+|+.....- +--...|+..|++-.+.|+.+.++.+|++....++.|
T Consensus 1593 ~l----Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1593 SL----PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hc----chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 21 321 122333333456899999999999988752 1134689999999999999999999999999988766
Q ss_pred C--HHhHHHHHHHHHhcCCHHHHHHH
Q 042756 258 D--TVCSNMVLSSYGDHNELSRMVLW 281 (425)
Q Consensus 258 ~--~~~yn~li~~~~~~g~~~~A~~l 281 (425)
- -..|...+.-=-+.|+-..++.+
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 4 56777777777777775554444
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.51 E-value=0.0071 Score=55.52 Aligned_cols=195 Identities=19% Similarity=0.192 Sum_probs=122.4
Q ss_pred HHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC---------------CchhhhHHHHHHHhhhcC
Q 042756 41 RFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH---------------PRLSSLAFPLYMRITEES 105 (425)
Q Consensus 41 ~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~---------------~~~~~~a~~lf~~m~~~~ 105 (425)
.++.++.....|.......+..-+...+.-+.+...+.+.+...... .+.+++|++++..-
T Consensus 53 ~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~---- 128 (290)
T PF04733_consen 53 SVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG---- 128 (290)
T ss_dssp HHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----
T ss_pred HHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----
Confidence 34455544445666655444333333234445555555554443221 12345555554331
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh--cCCcccHHHHHHHHHHHhhcCC
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK--HDSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~--~g~~~~~~~~~~~~~~~~~~~~ 183 (425)
-+.......+..|.+.++++.|.+.++.|.+.. +.. +-..+..++.. .|. +...+++..+.++...
T Consensus 129 ---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~---~l~qLa~awv~l~~g~-e~~~~A~y~f~El~~~-- 196 (290)
T PF04733_consen 129 ---GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDS---ILTQLAEAWVNLATGG-EKYQDAFYIFEELSDK-- 196 (290)
T ss_dssp ---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCH---HHHHHHHHHHHHHHTT-TCCCHHHHHHHHHHCC--
T ss_pred ---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcH---HHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHhc--
Confidence 356677788999999999999999999998642 222 22334444433 232 3467888888887543
Q ss_pred CCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHC
Q 042756 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL-EDMERIVNQMESD 253 (425)
Q Consensus 184 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~-~~a~~~~~~m~~~ 253 (425)
..++..+.|.+..++...|++++|.+++.+..... +-|..|...++.+....|+. +.+.+++.+++..
T Consensus 197 -~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 197 -FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 34667799999999999999999999999977543 22566888888888888887 7788999998864
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.50 E-value=0.029 Score=49.82 Aligned_cols=137 Identities=12% Similarity=0.023 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc--------CCcccHHHHHHHHHHHhhcCC
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH--------DSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~--------g~~~~~~~~~~~~~~~~~~~~ 183 (425)
..+..+..++.+.|++++|...|+++.+.... .+.....+..+-..+.+. |+ .+++.+.+.+.....+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~g~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~p 146 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAYYLRGLSNYNQIDRVDRDQTA---AREAFEAFQELIRRYP 146 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHHHHHHHHHHHhcccccCCHHH---HHHHHHHHHHHHHHCC
Confidence 45666788888999999999999998765332 221111233333334332 33 4555555555543321
Q ss_pred CCccCh-hH--------------HHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 042756 184 SVYVKR-QA--------------LKSMISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 184 ~~~p~~-~~--------------~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
.. +.. .. .-.+-..|.+.|++++|...|.+..... -+.....+..+..++.+.|+.++|..+
T Consensus 147 ~~-~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 147 NS-EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred CC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11 000 00 1134566788999999999999998752 122356889999999999999999999
Q ss_pred HHHHHHC
Q 042756 247 VNQMESD 253 (425)
Q Consensus 247 ~~~m~~~ 253 (425)
++.+..+
T Consensus 226 ~~~l~~~ 232 (235)
T TIGR03302 226 AAVLGAN 232 (235)
T ss_pred HHHHHhh
Confidence 9988765
No 103
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.48 E-value=0.039 Score=48.42 Aligned_cols=129 Identities=15% Similarity=0.052 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+............+.|++..|...|.+.... .|+....|+.+--+|-+.|+.++++..+....+.....+.
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~----- 169 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARL----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS----- 169 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch-----
Confidence 3334444666666677777777777775542 2222346666777777777766666666666665444432
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.+|.|.-.|.-.|+++.|..++..-...+- -|..+-..+.-.....|++++|+++-..
T Consensus 170 -~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 170 -IANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred -hhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 666666666667777777777776665432 2455556666666677777777666554
No 104
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.46 E-value=0.12 Score=51.07 Aligned_cols=227 Identities=11% Similarity=0.003 Sum_probs=107.2
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh--cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chh
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA--VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLS 91 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~--~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~ 91 (425)
...|.-.++.+.++++.+.+++. -++++.+. .--.+..-|+.++|+..+...+..+...+ ..+
T Consensus 14 ~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAm--kGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y 91 (700)
T KOG1156|consen 14 ALKCYETKQYKKGLKLIKQILKKFPEHGESLAM--KGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY 91 (700)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhCCccchhHHh--ccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH
Confidence 45666677778888888888777 33444322 22223344677788888777765443211 135
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~ 171 (425)
++|++.|.....-+ +-|..++.-+--.-++.|+++.....-.+..+. .+.....|..+.-++.-.|....+.+.
T Consensus 92 ~eaiKcy~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 92 DEAIKCYRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred HHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555543322 114444444444444445555444444433331 222233445555555555553333333
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHH------HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGL------CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~------~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~ 245 (425)
.+.+.+... ..|+...|.-...-+ .++|..++|.+....-... +.-....-.+--+.+.+.+++++|..
T Consensus 166 l~ef~~t~~----~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 166 LEEFEKTQN----TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHhhc----cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 333333321 123333444333222 3345555555444433221 11111122333444566666666666
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHH
Q 042756 246 IVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 246 ~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
++..+..+ .||-.-|+-....
T Consensus 241 ~y~~Ll~r--nPdn~~Yy~~l~~ 261 (700)
T KOG1156|consen 241 VYRRLLER--NPDNLDYYEGLEK 261 (700)
T ss_pred HHHHHHhh--CchhHHHHHHHHH
Confidence 66666655 3555555444433
No 105
>PLN02789 farnesyltranstransferase
Probab=97.45 E-value=0.08 Score=49.33 Aligned_cols=204 Identities=8% Similarity=-0.046 Sum_probs=126.7
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG-QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
..++|+.+.+...+.+.- +..+|+.--..+.+.| ++++++..++++.+. .+....+|+.---.+.+.|.. ..
T Consensus 52 ~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~----npknyqaW~~R~~~l~~l~~~-~~ 124 (320)
T PLN02789 52 RSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAED----NPKNYQIWHHRRWLAEKLGPD-AA 124 (320)
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH----CCcchHHhHHHHHHHHHcCch-hh
Confidence 344555555555443311 2334444444555566 689999999998765 222223455443344445542 12
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCH----H
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL---GLL----E 241 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---g~~----~ 241 (425)
.+......++....+ -|-.+|+..--++.+.|+++++++.++++.+.+.. |...|+.....+.+. |.. +
T Consensus 125 ~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 125 NKELEFTRKILSLDA---KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred HHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHH
Confidence 344555555543321 24469999999999999999999999999987533 455666655555443 322 4
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDH----NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~----g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
++.++....+... +-|...|+-+-..|... ++..+|.+.+.+....+ ..+......|++.|+.
T Consensus 201 ~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 201 SELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 5667766666543 23788999999988873 34467888888876643 3366778888888875
No 106
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.44 E-value=0.034 Score=57.22 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=81.6
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
...++..+-.|.....+.|..++|+.+++...+. .|+.......+...+.+.++ .+++....++.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----~Pd~~~a~~~~a~~L~~~~~---~eeA~~~~~~~l~~~---- 150 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR----FPDSSEAFILMLRGVKRQQG---IEAGRAEIELYFSGG---- 150 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHhcc---HHHHHHHHHHHhhcC----
Confidence 3344666666666666666777776666666553 33333445556666666666 344444444443322
Q ss_pred cC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH
Q 042756 187 VK-RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM 264 (425)
Q Consensus 187 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~ 264 (425)
|+ ....+.+-.++.+.|++++|..+|++.... .|+ ..++...-.++-+.|+.++|...|+...+.- .+....||-
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~ 227 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTR 227 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHH
Confidence 22 235555566666666666777766666652 232 5566666666666666666666666655431 233445554
Q ss_pred HH
Q 042756 265 VL 266 (425)
Q Consensus 265 li 266 (425)
.+
T Consensus 228 ~~ 229 (694)
T PRK15179 228 RL 229 (694)
T ss_pred HH
Confidence 43
No 107
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.39 E-value=0.0079 Score=57.29 Aligned_cols=121 Identities=17% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
.++..+...++++.|.++|+++.+.. |. +...+...+...++ -.++.+.+.+.....+ -|....+.-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~----pe---v~~~LA~v~l~~~~---E~~AI~ll~~aL~~~p---~d~~LL~~Q 240 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD----PE---VAVLLARVYLLMNE---EVEAIRLLNEALKENP---QDSELLNLQ 240 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC----Cc---HHHHHHHHHHhcCc---HHHHHHHHHHHHHhCC---CCHHHHHHH
Confidence 34455555566777777777766542 22 12335555554443 3455555555553321 123344444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGF-EYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
...+.+.++.+.|+.+.+++.. +.|+.+ +|..|..+|.+.|+++.|...++.+.
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5555566666666666666555 345433 56666666666666666655555543
No 108
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.35 E-value=0.0095 Score=48.65 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG--FEYK 228 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~ 228 (425)
.|..++..+. .++...+.+.++.+.+. .+.........=.+-..+...|++++|...|+......-.|+. ...-
T Consensus 14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~---~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQALQ-AGDPAKAEAAAEQLAKD---YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 5666666664 66654455544444443 2222111123334557788899999999999999997633322 2444
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 229 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
.+-..+...|++++|...++......+ ....+...-+.|.+.|+.++|...|++.
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 567788999999999999987554433 4557778889999999999999999863
No 109
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.35 E-value=0.19 Score=49.81 Aligned_cols=332 Identities=10% Similarity=-0.026 Sum_probs=194.5
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHHH
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAFP 96 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~~ 96 (425)
|...+.++.|+.+|....+-++.+...|......=-..|..+....+|.+.+......+ +.+..|..
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 34444666777888877766777778888777777777888888888877765544332 23555666
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
+++..-+... -+..++-.-+..-....+++.|+.+|.+.....+.. .+|..-++.---.+. .+++.++++
T Consensus 606 il~~af~~~p--nseeiwlaavKle~en~e~eraR~llakar~~sgTe-----Rv~mKs~~~er~ld~---~eeA~rllE 675 (913)
T KOG0495|consen 606 ILDQAFEANP--NSEEIWLAAVKLEFENDELERARDLLAKARSISGTE-----RVWMKSANLERYLDN---VEEALRLLE 675 (913)
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcc-----hhhHHHhHHHHHhhh---HHHHHHHHH
Confidence 6666555431 255566677777778888888888888876643321 133333333323333 667777776
Q ss_pred HHhhcCCCCccCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 177 QLVNSSSSVYVKR-QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 177 ~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
+.... +|+- ..|-.+-..+-+.++++.|.+.|..-... ++-.+--|-.+.+.=-+.|.+..|..+++.-.-.+-
T Consensus 676 e~lk~----fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP 750 (913)
T KOG0495|consen 676 EALKS----FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP 750 (913)
T ss_pred HHHHh----CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence 66543 3332 24444444555556666666665543332 222344677777777888899999999998776653
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH---HHHhhc--cCCchhhHHHHHhhc
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS---MLQDLN--SNDFPLSILELTEVL 330 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~---~~~~~~--~~~~~~~~~~~~~~~ 330 (425)
-+...|-..|..=.+.|..+.|..+..+..+. +.-+..-|.--|-...+.++ ..+++. .+....++..-.-+-
T Consensus 751 -k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw 828 (913)
T KOG0495|consen 751 -KNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFW 828 (913)
T ss_pred -CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHH
Confidence 37889999999999999999998887776543 33344455544443322211 111111 122222222111111
Q ss_pred chhhHHHHHHHHhCCCC--cc-cceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 331 NEEEVSVVKELEDSSVL--DE-AMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 331 ~~~~~~~~~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.........+.+.+-+. || -.+|--+..-+.++|.-++- .++++.-..
T Consensus 829 ~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~-----kev~~~c~~ 879 (913)
T KOG0495|consen 829 SEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQ-----KEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHH-----HHHHHHHhc
Confidence 11222233333333222 33 25677777777888876666 667766544
No 110
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.35 E-value=0.004 Score=45.44 Aligned_cols=96 Identities=14% Similarity=0.036 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
+|..+...+...|++++|..+|++..+.. ..+...+..+...+...|++++|.+.|+...+... .+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHH
Confidence 46667778888999999999999987752 22346777888888999999999999998877542 34468888888999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 042756 271 DHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~ 288 (425)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999998887643
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.33 E-value=0.013 Score=60.27 Aligned_cols=189 Identities=11% Similarity=0.060 Sum_probs=132.6
Q ss_pred HHHHHhcCC-hHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042756 61 ISKFVASSP-QFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWN-PKLVAEIIAFLDKQGQREEAETLILETL 138 (425)
Q Consensus 61 l~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 138 (425)
+..|++.-+ ...++-.+-++....+ .+++|..+++...+-. |+ ......+...+.+.+++++|+..+++..
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g----~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l 147 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAH----RSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYF 147 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcC----CcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 344555444 3677777777776664 8999999999998765 44 4556678889999999999999999987
Q ss_pred HhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 139 SKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 139 ~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
+. .|+.......+-.++.+.|+.+++.++++.+.. .+. -+..++-.+-.++-+.|+.++|...|++..+.
T Consensus 148 ~~----~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---~~p---~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 148 SG----GSSSAREILLEAKSWDEIGQSEQADACFERLSR---QHP---EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred hc----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---cCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 333344567788889999995555555544443 221 12458899999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcCHHhHHHHHHHHHhcC
Q 042756 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 219 g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~~yn~li~~~~~~g 273 (425)
..|....|+..+ +++..-..+++++.-. |..........+|.-|.+..
T Consensus 218 -~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (694)
T PRK15179 218 -IGDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRR 269 (694)
T ss_pred -hCcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcC
Confidence 345556666664 3455556666666533 44445667777777777654
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.29 E-value=0.29 Score=52.96 Aligned_cols=170 Identities=15% Similarity=0.046 Sum_probs=108.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCch-hHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 118 IAFLDKQGQREEAETLILETLSKLGSRER-ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 118 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
-..+...|++++|...+++..+....... ......+.+-..+...|+++.+...+..............+-..+++.+-
T Consensus 459 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 459 AQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34456789999999999987653211111 11223455566677889966555554444443332211212233556667
Q ss_pred HHHHhcCChhHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCc--CHHhHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVK----GLE--P-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD--GTRV--DTVCSNMV 265 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~----g~~--p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~--~~~~yn~l 265 (425)
..+...|++++|...+++.... +.. | ....+..+-..+...|++++|...+.+.... ...+ ....+..+
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 618 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAML 618 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence 7788899999999999887653 221 1 2334555566677889999999999876542 1112 24455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 042756 266 LSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~ 287 (425)
...+...|+.++|...+.+...
T Consensus 619 a~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 619 AKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6778899999999999988754
No 113
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.036 Score=48.61 Aligned_cols=154 Identities=11% Similarity=0.056 Sum_probs=88.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
.-..+--.|+-+....+....... ...+ ...-.......++.|+ ..++...+++.... -.+|...||.+-
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~---~~~d-~~ll~~~gk~~~~~g~---~~~A~~~~rkA~~l---~p~d~~~~~~lg 141 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA---YPKD-RELLAAQGKNQIRNGN---FGEAVSVLRKAARL---APTDWEAWNLLG 141 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc---Cccc-HHHHHHHHHHHHHhcc---hHHHHHHHHHHhcc---CCCChhhhhHHH
Confidence 444444455555554444443221 1111 1123446666667777 34444444444322 224566777777
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
-+|.+.|++++|..-|.+..+- .| +...+|.+--.+.-.||.+.|..++..-...+-. |...-+.|.-.....|++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 7777777777777777776663 22 3456666666777777777777777776665432 556666666667777777
Q ss_pred HHHHHHHH
Q 042756 276 SRMVLWLQ 283 (425)
Q Consensus 276 ~~A~~l~~ 283 (425)
++|.++-.
T Consensus 219 ~~A~~i~~ 226 (257)
T COG5010 219 REAEDIAV 226 (257)
T ss_pred HHHHhhcc
Confidence 77765543
No 114
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.014 Score=45.27 Aligned_cols=98 Identities=10% Similarity=-0.071 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCcCHHhHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGL--EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--TRVDTVCSNMVL 266 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~yn~li 266 (425)
++......+.+.|++++|.+.|+++.+..- ......+..+..++.+.|+++.|.+.|+...... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 677788888999999999999999987521 1123466778889999999999999999988642 112256688888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC
Q 042756 267 SSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
..+...|+.++|.+.|++..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 8899999999999999999876
No 115
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.16 Score=46.59 Aligned_cols=180 Identities=13% Similarity=0.087 Sum_probs=116.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH--Hhc----CCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF--CKH----DSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~--~~~----g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
.|+-.|.+.+++++|..+..++. |..+ |.-++.+. ... |..+ -....+.++++..+....--++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~-----PttP----~EyilKgvv~aalGQe~gSre-HlKiAqqffqlVG~Sa~ecDTI 359 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLD-----PTTP----YEYILKGVVFAALGQETGSRE-HLKIAQQFFQLVGESALECDTI 359 (557)
T ss_pred hheeeecccccHHHHHHHHhhcC-----CCCh----HHHHHHHHHHHHhhhhcCcHH-HHHHHHHHHHHhcccccccccc
Confidence 36777889999999998877753 2222 23344442 222 3322 2344555566654432211112
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH-HH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL-SS 268 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li-~~ 268 (425)
----++-+++.-..++|+++-.++.++.-=..-|.+-|| +..+++..|.+.+|+++|-.+....++ |..+|-+++ ++
T Consensus 360 pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArC 437 (557)
T KOG3785|consen 360 PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARC 437 (557)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHH
Confidence 234466677777888999999999988764444555554 668999999999999999988776665 677777655 67
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV-LNSCSTIMSM 310 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l-l~~~~~~~~~ 310 (425)
|.+++.++-|.++|-+|...+ +..+.--+ .+-|-+.+.+
T Consensus 438 yi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eF 477 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEF 477 (557)
T ss_pred HHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHH
Confidence 889999999988877765432 33343333 3456666665
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.21 E-value=0.0075 Score=49.19 Aligned_cols=94 Identities=12% Similarity=-0.091 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (425)
+...-..+...|++++|...|+..... .|.....|..+-.++.+.|+++++.+.++......+ .+...+.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p------~~~~a~~ 96 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA----QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA------SHPEPVY 96 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------CCcHHHH
Confidence 334556667777777777777776653 222233566677777777774433333333333211 1234677
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
.+-.++.+.|++++|...|++...
T Consensus 97 ~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 97 QTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777666
No 117
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.20 E-value=0.018 Score=54.96 Aligned_cols=93 Identities=11% Similarity=-0.096 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD-TVCSNMVLSSY 269 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~yn~li~~~ 269 (425)
..-.+.+.+...++-.+|.++.++.... .+-|......-...+.+.++.+.|.++.+...+. .|+ -.+|..|..+|
T Consensus 202 v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 202 VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECY 278 (395)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHH
Confidence 3344555555555555666665555542 1123334444444555666666666666655554 233 33666666666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042756 270 GDHNELSRMVLWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~ 286 (425)
...|++++|+-.++.+.
T Consensus 279 i~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 279 IQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHhcCc
Confidence 66666666665555543
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.20 E-value=0.057 Score=53.98 Aligned_cols=221 Identities=7% Similarity=-0.064 Sum_probs=157.5
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
++|-...=..+...+.+.|-+..|..+|+... .|.-+|..|+..|+..+ +-.+..+... -.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~k---aeei~~q~le----k~ 454 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGK---AEEINRQELE----KD 454 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccch---HHHHHHHHhc----CC
Confidence 44444455567788888999999999998863 57788999999997444 4444444443 23
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
||...|..+.+......-+++|.++++....+ .-..+-....+++++.++.+.|+.-.+.+ ..-..+|-.+-
T Consensus 455 ~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G 526 (777)
T KOG1128|consen 455 PDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLG 526 (777)
T ss_pred CcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhcc
Confidence 67779999999998888999999999876543 11111112234789999999998655432 12456777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCC
Q 042756 267 SSYGDHNELSRMVLWLQKMKDSGIPFSV-RTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSS 345 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (425)
-+..+.++++.|.+.|..-.. ..||. ..||.+-.+|.+.++-.++ -..+.+..+..
T Consensus 527 ~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra---------------------~~~l~EAlKcn 583 (777)
T KOG1128|consen 527 CAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRA---------------------FRKLKEALKCN 583 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHH---------------------HHHHHHHhhcC
Confidence 777789999999999998764 36766 5899999998887765332 22334444444
Q ss_pred CCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 346 VLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 346 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.-+...|.-.+..-.+.|.+++| ++.+.+|..
T Consensus 584 -~~~w~iWENymlvsvdvge~eda-----~~A~~rll~ 615 (777)
T KOG1128|consen 584 -YQHWQIWENYMLVSVDVGEFEDA-----IKAYHRLLD 615 (777)
T ss_pred -CCCCeeeechhhhhhhcccHHHH-----HHHHHHHHH
Confidence 56667888888888899999999 888888765
No 119
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.19 E-value=0.084 Score=45.57 Aligned_cols=117 Identities=12% Similarity=0.025 Sum_probs=65.3
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH-HhcCCc--c
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF-CKHDSK--R 166 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~-~~~g~~--~ 166 (425)
..+++...++...+.+ +.|...|..+-..|...|++++|...|++..+... +....+..+-.++ ...|+. +
T Consensus 54 ~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P----~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG----ENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHhcCCCCcH
Confidence 3445555555544433 13666777777777777777777777777665321 1122445555543 455542 3
Q ss_pred cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
++.+.++...+..+. +..++..+-..+.+.|++++|...|+++.+.
T Consensus 128 ~A~~~l~~al~~dP~------~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 128 QTREMIDKALALDAN------EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHHhCCC------ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 333333333332221 2236677777777777777777777777664
No 120
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.058 Score=47.53 Aligned_cols=63 Identities=16% Similarity=0.180 Sum_probs=36.0
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 191 ALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 191 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
+.+-|-.+|.+ .+.+.+|+-+|++|.++ ..|+..+.+-...++...|++++|+.++++..++.
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 55544444444 23555666666666543 45566666666666666666666666666655543
No 121
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.14 E-value=0.14 Score=47.07 Aligned_cols=172 Identities=14% Similarity=0.093 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSK---LGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~~~~~y~~li~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.|......|-+. ++++|.+.|++.... .+. .......+..+-..|-.. |+++.+.+.+....+.....+...--
T Consensus 77 ~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a 154 (282)
T PF14938_consen 77 AYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSA 154 (282)
T ss_dssp HHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhH
Confidence 344444444333 555555555554331 111 111122333444444444 55444444444333333222211111
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCcC--
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGL-----EPSGF-EYKCIIYGYGRLGLLEDMERIVNQMESD--GTRVD-- 258 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~-- 258 (425)
..++.-+...+.+.|++++|.++|++....-. +++.. .|-..+-++...||...|.+.|+...+. ++..+
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E 234 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSRE 234 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 23666777778888888888888888765432 22222 2233344556678888888888887643 33222
Q ss_pred HHhHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 042756 259 TVCSNMVLSSYGD--HNELSRMVLWLQKMK 286 (425)
Q Consensus 259 ~~~yn~li~~~~~--~g~~~~A~~l~~~M~ 286 (425)
...-..||.+|-. ...+.+|+.-|+.+.
T Consensus 235 ~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 235 YKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3445556666643 234555555555544
No 122
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.14 E-value=0.3 Score=52.76 Aligned_cols=265 Identities=8% Similarity=-0.062 Sum_probs=149.7
Q ss_pred HHHhhHHHHHHHHHHhHHh-cCCCH----HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcC
Q 042756 31 LTARLTKQGQRFLSSLALA-VTRDS----KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~-~~~d~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~ 105 (425)
...|++.+|...++..... ...+. .+.+.+-..+...|+.+.+...+.+.+ ..+... +
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al--------------~~~~~~---g 525 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTE--------------QMARQH---D 525 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHHhhh---c
Confidence 4567888888888876654 22221 233444455555676666666655543 122211 1
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK----LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (425)
...+-..++..+-..+...|++++|.+.+++.... +....+.....+..+-..+...|+++.+.+.+.........
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 11122334556677788899999999998886552 11111111223444555667779966655555544444332
Q ss_pred CCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEPSGFEY--KCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 182 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~ty--~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
.. .......+..+...+...|+.++|.+.+.+.... +..+..... ...+..+...|+.+.|.+.+........
T Consensus 606 ~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 606 YQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred cC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 21 1112335556677888899999999999888653 111111011 1123445668999999999877554221
Q ss_pred CcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHHHHHHHHh
Q 042756 256 RVD---TVCSNMVLSSYGDHNELSRMVLWLQKMKDS----GIPFSV-RTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 256 ~~~---~~~yn~li~~~~~~g~~~~A~~l~~~M~~~----g~~pd~-~t~~~ll~~~~~~~~~~~~ 313 (425)
... ...+..+..++...|+.++|..++.+.... |..++. .+...+-.++...|+..++
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 111 112456677788999999999999987542 322221 3444444455565655444
No 123
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.13 E-value=0.034 Score=45.36 Aligned_cols=131 Identities=15% Similarity=0.087 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..|..++..+. .++...+.+.++.+.+........ ....-.+-..+...|++++ +...+................
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya-~~A~l~lA~~~~~~g~~~~---A~~~l~~~~~~~~d~~l~~~a 87 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYA-ALAALQLAKAAYEQGDYDE---AKAALEKALANAPDPELKPLA 87 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhCCCHHHHHHH
Confidence 34555666653 677888888888887753332221 1122234456777788444 444444443332111001124
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.--+-..+...|++++|+..++...... .....+...-+.|.+.|+.++|...|+.
T Consensus 88 ~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 88 RLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4446677778888888888886643322 2334566667778888888888888764
No 124
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.11 E-value=0.27 Score=46.94 Aligned_cols=336 Identities=10% Similarity=0.019 Sum_probs=210.8
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC------------CchhhhHHHHHHH
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH------------PRLSSLAFPLYMR 100 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~------------~~~~~~a~~lf~~ 100 (425)
-|.+.-|.++|++-.+ ..||..+|++.|+-=.+-...+.|.+++...+.-.... .|.+..|.++|..
T Consensus 154 LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred hcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 3456667777776443 68899999999888888888888888888875433221 1244556666665
Q ss_pred hhhcCCCccCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 101 ITEESWFQWNPKLVAEIIAFLD----KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 101 m~~~~~~~~~~~~~~~ll~~~~----~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
..+.- -|...-..+..+|+ ++..++.|.-+|.-...... .......|..+..-=-+.|+..+.+++..-=+
T Consensus 233 Aie~~---~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p--k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 233 AIEFL---GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP--KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 43321 02222223334443 45667778777777655422 22112345556555566788887777654333
Q ss_pred HHhhcCC--CCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH-------HHHH---HHHHHHHcCCCHHHHH
Q 042756 177 QLVNSSS--SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG-------FEYK---CIIYGYGRLGLLEDME 244 (425)
Q Consensus 177 ~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~ty~---~ll~~~~~~g~~~~a~ 244 (425)
++..+.. ...-|=.+|--.++.--..|+.+...++|++.... ++|-. +.|- -.+-.-....|++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3321110 01112347778888888889999999999998864 55521 1221 2222234568899999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh------
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYG----DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL------ 314 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~----~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~------ 314 (425)
++++...+ =|+....||.-+=-.|+ ++.++..|.+++...+ |.-|-..+|..-|.-=.+++.++...
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99998888 34445666666555554 6778899998888765 77899999888888766666665542
Q ss_pred ---ccCCchhhHH--HH-HhhcchhhHHHHHHHHhCCCC--cccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 315 ---NSNDFPLSIL--EL-TEVLNEEEVSVVKELEDSSVL--DEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 315 ---~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
++..+.++.. .+ ..+|..+.+..++++--+... .....|...|.-=...|.+++| ..+++...+
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka-----R~LYerlL~ 535 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA-----RALYERLLD 535 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH-----HHHHHHHHH
Confidence 1222223322 22 445556777777776533322 3346788888888889999999 899998887
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.11 E-value=0.11 Score=54.49 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhC
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLS 82 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~ 82 (425)
+...+..|+..+...++++.+..++...+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~ 59 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLK 59 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 126
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.08 E-value=0.021 Score=45.78 Aligned_cols=63 Identities=10% Similarity=-0.104 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..|..+-.++.+.|++++|..+|++....+ +.+..++..+-..|...|+++.|.+.|+...+.
T Consensus 52 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 52 RYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555555666666666666666554432 223445555555566666666666666655543
No 127
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.04 E-value=0.32 Score=46.59 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
+......+.+.++.++|.+.|+.+... .|+ ....-.+-.+|.+.|+.++|.++++....+. +-|...|..|-.+|.
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~ 419 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYA 419 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHH
Confidence 334444455555555555555555442 333 2233334445555555555555555544332 224455555555555
Q ss_pred hcCCHHHHHHHHHH
Q 042756 271 DHNELSRMVLWLQK 284 (425)
Q Consensus 271 ~~g~~~~A~~l~~~ 284 (425)
..|+..+|..-.-+
T Consensus 420 ~~g~~~~a~~A~AE 433 (484)
T COG4783 420 ELGNRAEALLARAE 433 (484)
T ss_pred HhCchHHHHHHHHH
Confidence 55544444443333
No 128
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.03 E-value=0.14 Score=46.93 Aligned_cols=114 Identities=14% Similarity=0.080 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhc-CChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-----CcC
Q 042756 191 ALKSMISGLCEM-GQPHEAENLIEEMRVK----GLEPS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGT-----RVD 258 (425)
Q Consensus 191 ~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~-----~~~ 258 (425)
++..+-..|-+. |++++|++.|++..+. | .+. ..++..+...+.+.|++++|.++|++....-. +.+
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~ 194 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS 194 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence 555566666666 8899999998887653 3 221 33667788889999999999999998876432 223
Q ss_pred HH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHH
Q 042756 259 TV-CSNMVLSSYGDHNELSRMVLWLQKMKDS--GIPFS--VRTYNSVLNSCS 305 (425)
Q Consensus 259 ~~-~yn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd--~~t~~~ll~~~~ 305 (425)
+. .|-..+-++...|++..|.+.|++.... ++..+ ......||.+|-
T Consensus 195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 32 2223344666788999999999998643 33322 345555565553
No 129
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.92 E-value=0.013 Score=46.33 Aligned_cols=78 Identities=17% Similarity=0.164 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHH---------------HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMR---------------VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-G 254 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~---------------~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-g 254 (425)
++.++|.++++.|+++....+.+..= ...+.||..+..+++.+|+.+|++..|.++.+...+. +
T Consensus 4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~ 83 (126)
T PF12921_consen 4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP 83 (126)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence 44555555555555555544443321 1123345555555555555555555555555544432 4
Q ss_pred CCcCHHhHHHHHHH
Q 042756 255 TRVDTVCSNMVLSS 268 (425)
Q Consensus 255 ~~~~~~~yn~li~~ 268 (425)
++.+..+|..|+.-
T Consensus 84 I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 84 IPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHH
Confidence 44444455544443
No 130
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.91 E-value=0.0019 Score=47.17 Aligned_cols=81 Identities=11% Similarity=0.064 Sum_probs=55.0
Q ss_pred cCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 042756 202 MGQPHEAENLIEEMRVKGL-EPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~-~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~ 280 (425)
.|+++.|+.+|+++.+..- .|+...+-.+-.+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 5788889999998887632 22444455578888999999999999887 222111 22333355677888999999988
Q ss_pred HHHH
Q 042756 281 WLQK 284 (425)
Q Consensus 281 l~~~ 284 (425)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8875
No 131
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.89 E-value=0.04 Score=43.56 Aligned_cols=103 Identities=14% Similarity=0.017 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
|..++..+|-++++.|+.+...+++...-.-+......-.. ........|+..+..+++.+|+..|++..|.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~-------~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~ 73 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD-------YPPSSPLYPTSRLLIAIVHSFGYNGDIFSALK 73 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc-------cCCCCCCCCCHHHHHHHHHHHHhcccHHHHHH
Confidence 56788999999999999999999998775432111000000 33345578999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+.+...+....+-+. .+|..|+.-.....+
T Consensus 74 ~vd~fs~~Y~I~i~~--~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 74 LVDFFSRKYPIPIPK--EFWRRLLEWAYVLSS 103 (126)
T ss_pred HHHHHHHHcCCCCCH--HHHHHHHHHHHHhcC
Confidence 999999987755553 478888887665544
No 132
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=96.85 E-value=0.14 Score=53.70 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=101.5
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC--
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS-- 184 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-- 184 (425)
-+.+...+..|+..+-..+++++|.++.++-.+. . |.. ...|-.+-..+.+.++.+.+..+ .+.+.......
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~-P~~--i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-H-KKS--ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C-Ccc--eehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 3456677888999999999999999998865543 1 121 11232233355555553322222 11111111100
Q ss_pred -----------CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 185 -----------VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 185 -----------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..-+...+-.+..+|-+.|+.++|..+|++..+.. .-|+.+.|.+-..|+.. ++++|.+++......
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 00011366677788888899999999999999876 44678899999999999 999999988877664
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 254 g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
|....++.++.+++.++.+.
T Consensus 179 ---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 179 ---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred ---------------HHhhhcchHHHHHHHHHHhc
Confidence 45555666666666666554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.3 Score=42.90 Aligned_cols=156 Identities=15% Similarity=0.066 Sum_probs=97.0
Q ss_pred CChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc
Q 042756 125 GQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202 (425)
Q Consensus 125 g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 202 (425)
.+.++.++++.++... .+...++....|.-++-+....|+.+.+..+++.+.+..+.... +.-..+| -+-..
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~R----V~~lkam--~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKR----VGKLKAM--LLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChh----HHHHHHH--HHHHh
Confidence 4567777777776542 11123333445666666666677766677777777665432211 1111111 12335
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 042756 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~ 282 (425)
|+.++|+++++...+.. +-|.++|.-=+-..-..|+--+|++-+....+. +.-|...|.-+-..|...|++++|.-++
T Consensus 100 ~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 100 GNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred hchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 78888888888888765 335666655444444555555666666666553 3458888888888888888888888888
Q ss_pred HHHHhC
Q 042756 283 QKMKDS 288 (425)
Q Consensus 283 ~~M~~~ 288 (425)
++|.-.
T Consensus 178 EE~ll~ 183 (289)
T KOG3060|consen 178 EELLLI 183 (289)
T ss_pred HHHHHc
Confidence 888753
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=96.82 E-value=0.32 Score=46.66 Aligned_cols=166 Identities=11% Similarity=0.109 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
-|..-+. +...|+.++|+..++++... .|+++.........+.+.++ +.++.+.+.+.....+.. ...+
T Consensus 309 ~YG~A~~-~~~~~~~d~A~~~l~~L~~~----~P~N~~~~~~~~~i~~~~nk---~~~A~e~~~kal~l~P~~---~~l~ 377 (484)
T COG4783 309 QYGRALQ-TYLAGQYDEALKLLQPLIAA----QPDNPYYLELAGDILLEANK---AKEAIERLKKALALDPNS---PLLQ 377 (484)
T ss_pred HHHHHHH-HHHhcccchHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhcCCCc---cHHH
Confidence 4443333 33557888888888887654 33334444556666778887 444444454444433221 1266
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
-.+-.+|.+.|++.+|.+++++-... .+-|...|..+-.+|...|+..++..-.. .+|...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~ 438 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALA 438 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhC
Confidence 67778888888888888888877664 34567788888888888888777765443 345567
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHH
Q 042756 273 NELSRMVLWLQKMKDSG--IPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g--~~pd~~t~~~ll~~~~~~~ 308 (425)
|+++.|...+....+.. -.|+..=+...|+......
T Consensus 439 G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~~~ 476 (484)
T COG4783 439 GRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQQN 476 (484)
T ss_pred CCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH
Confidence 88888888877776542 2455555666666655433
No 135
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.35 Score=43.43 Aligned_cols=154 Identities=11% Similarity=0.032 Sum_probs=84.8
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH------------------HHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL------------------VLF 151 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~------------------~~~ 151 (425)
.++.|++-|....+-+++.|- ..||..+ +..+.|+.+.|++...++.++|....|.. ...
T Consensus 159 qyEaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 467788888877666656543 3666444 44455778888888888877654433221 011
Q ss_pred HHHHHHH-------HHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 042756 152 YCNLIDS-------FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG 224 (425)
Q Consensus 152 y~~li~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 224 (425)
-+.++.+ +.+.|+ .+.+-+.+.+|++... ...|.+|...+--.-. .+++.+..+-+.-+.+.+- -..
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n---~eAA~eaLtDmPPRaE-~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ 310 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRN---YEAAQEALTDMPPRAE-EELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPP 310 (459)
T ss_pred HHHHHHHhhhhhhhhhhccc---HHHHHHHhhcCCCccc-ccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CCh
Confidence 1223333 233455 4455555666654432 3345556555432222 2334444443444443321 134
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 225 FEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 225 ~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.||..++-.|||+.-++.|..++.+-.
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCc
Confidence 688888888888888888877776543
No 136
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.79 E-value=0.031 Score=46.86 Aligned_cols=94 Identities=11% Similarity=-0.057 Sum_probs=68.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP--SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
.|..+...+...|++++|+..|++.....-.| ...++..+-..+.+.|+.++|.+.++...... +....+++.+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 67777788888899999999998887653222 23578888888899999999999998877642 2234556666666
Q ss_pred HH-------hcCCHHHHHHHHHHH
Q 042756 269 YG-------DHNELSRMVLWLQKM 285 (425)
Q Consensus 269 ~~-------~~g~~~~A~~l~~~M 285 (425)
|. ..|++++|...+++-
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHH
Confidence 66 778887666666654
No 137
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.74 E-value=0.039 Score=50.55 Aligned_cols=145 Identities=5% Similarity=-0.038 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
+|..+++..-+.+..+.+. .+|.+... ...+..++....++|.-+ ..++.+.|.++|+...+. ..-+...|...
T Consensus 3 v~i~~m~~~~r~~g~~~aR---~vF~~a~~-~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAAR---KVFKRARK-DKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHC-CCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHH---HHHHHHHc-CCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHH
Confidence 6788888888877744444 44444432 222433434444444333 256777799999999876 45567788888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 231 IYGYGRLGLLEDMERIVNQMESDGTRV---DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
++.+.+.|+.+.|..+|+..... +.+ ....|...+.-=.+.|+.+.+.++.+++.+. -|+..++..+++-|
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 99999999999999999998865 322 2359999999999999999999999998874 55655555555443
No 138
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.70 E-value=0.47 Score=48.45 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhh
Q 042756 34 RLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLL 81 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l 81 (425)
|..+.|.+-...+ -+-..|..|.+.|.+..+.+.|---+-+|-
T Consensus 742 G~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~ 784 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMK 784 (1416)
T ss_pred ccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence 3444454444443 345679999999999998888887777773
No 139
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.69 E-value=0.076 Score=44.67 Aligned_cols=84 Identities=14% Similarity=-0.013 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
..|..+...+...|++++|...|++.....-.+. ...+..+...+.+.|++++|...++...+..- -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3667777777888888888888888876533222 35777778888888888888888887776421 24555666666
Q ss_pred HHHhcCC
Q 042756 268 SYGDHNE 274 (425)
Q Consensus 268 ~~~~~g~ 274 (425)
.|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 6666665
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.67 E-value=0.12 Score=39.91 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
++-.+...+.+.|++++|.+.|+++.+...... .....+..+...+.+.|+++ ++...+.+.....+........+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST-YAPNAHYWLGEAYYAQGKYA---DAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc-ccHHHHHHHHHHHHhhccHH---HHHHHHHHHHHHCCCCCcccHHH
Confidence 344456666677777777777777765422111 10113344666666666633 33333333322211110112345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..+..++.+.|+.++|.+.+++....
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 56666666667777777777666664
No 141
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=96.66 E-value=0.056 Score=51.38 Aligned_cols=104 Identities=10% Similarity=-0.077 Sum_probs=79.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~ 276 (425)
..+...|++++|++.|++..+.. .-+...|..+-.+|.+.|++++|...++...+..- .+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 44566788999999999888742 22466788888888999999999999988877532 25677888888888999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 277 RMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 277 ~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
+|...|++..+. .|+.......+..|
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~~~ 113 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999988764 56666666665554
No 142
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.63 E-value=0.31 Score=47.35 Aligned_cols=119 Identities=11% Similarity=0.043 Sum_probs=96.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH-HHHCCCCcCHHhHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQ-MESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~-m~~~g~~~~~~~yn~li~~ 268 (425)
+|...|+.-.+..-+..|..+|.+..+.+..+ ++++++++|.-|| .+|.+-|.++|+. |+..|- +..--+..++-
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d--~p~yv~~Yldf 444 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGD--SPEYVLKYLDF 444 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCC--ChHHHHHHHHH
Confidence 89999999999999999999999999998877 8889999998777 4678899999995 445432 34445677888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMKDSGIPFSV--RTYNSVLNSCSTIMSMLQ 312 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~~~~~~~~ 312 (425)
+...++-..|..+|++....++.||. ..|..+|+-=+..|++..
T Consensus 445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~s 490 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNS 490 (656)
T ss_pred HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHH
Confidence 88899999999999999988777665 689998887666665543
No 143
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.53 E-value=1 Score=44.93 Aligned_cols=184 Identities=13% Similarity=0.098 Sum_probs=106.1
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC---------------chhhhHHHH
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP---------------RLSSLAFPL 97 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~---------------~~~~~a~~l 97 (425)
+.+++.++.+...|.. .|-.-+..+.+.+....+..+|...+..-.... +..+-+.++
T Consensus 88 n~c~er~lv~mHkmpR-------Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rv 160 (835)
T KOG2047|consen 88 NNCFERCLVFMHKMPR-------IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRV 160 (835)
T ss_pred HHHHHHHHHHHhcCCH-------HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHH
Confidence 4556666655444432 244444444445555555555555443221110 123456666
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCC---CchhHHHHHHHHHHHHHhcCCcccHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGS---RERELVLFYCNLIDSFCKHDSKRGFDDTYAR 174 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~---~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~ 174 (425)
+++..+- ++..-+--|..+++.+++++|-+.+......... ..+++...|.-+-+..++..+.-.-...-.+
T Consensus 161 yrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 161 YRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHH
Confidence 6665432 3334566788999999999999998887542111 1122244567777777766553322223333
Q ss_pred HHHHhhcCCCCccCh--hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042756 175 LNQLVNSSSSVYVKR--QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234 (425)
Q Consensus 175 ~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 234 (425)
++.. ...++|. ..|++|-.-|.+.|.+|+|.++|++-.+.- -+..-|+.+.++|
T Consensus 236 iR~g----i~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Y 291 (835)
T KOG2047|consen 236 IRGG----IRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAY 291 (835)
T ss_pred HHhh----cccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHH
Confidence 3333 3355664 599999999999999999999999987642 2334455554444
No 144
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.49 E-value=0.012 Score=40.74 Aligned_cols=62 Identities=6% Similarity=0.129 Sum_probs=34.6
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042756 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300 (425)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 300 (425)
+.|++++|.++|+.+.+..- -+...+-.+..+|.+.|++++|.+++++.... .|+...|..+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 45666666666666654421 14555556666666666666666666666544 3554444443
No 145
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.48 E-value=0.35 Score=46.99 Aligned_cols=204 Identities=9% Similarity=0.074 Sum_probs=127.6
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcc
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG---QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 166 (425)
..+++.++++.....- ..-+..+|..+...=-..- ..+...+.+++....... .+ ..+|..+|+.--|..-++
T Consensus 308 ~t~e~~~~yEr~I~~l-~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-~~--tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 308 LTDEAASIYERAIEGL-LKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-DL--TLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-CC--ceehhHHHHHHHHhhhHH
Confidence 4566666666644332 2123333333222211111 255566666666554222 22 346888888877766544
Q ss_pred cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHH
Q 042756 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF-EYKCIIYGYGRLGLLEDMER 245 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~a~~ 245 (425)
.+..+|...++..... =.+.+++++|.-|| .++.+-|.++|+.-..+ -+|.- --...++-+...|+=..|.-
T Consensus 384 aaR~iF~kaR~~~r~~----hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~ 456 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTR----HHVFVAAALMEYYC-SKDKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARA 456 (656)
T ss_pred HHHHHHHHHhhccCCc----chhhHHHHHHHHHh-cCChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHH
Confidence 4444444444433222 15569999999888 67788999999986654 23433 33566778888999999999
Q ss_pred HHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHH
Q 042756 246 IVNQMESDGTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDS---GIPFSVRTYNSVLNSC 304 (425)
Q Consensus 246 ~~~~m~~~g~~~~--~~~yn~li~~~~~~g~~~~A~~l~~~M~~~---g~~pd~~t~~~ll~~~ 304 (425)
+|+.....++.|| ...|+.+|+-=..-|+...+.++=+++... ...|...+-..+++-|
T Consensus 457 LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY 520 (656)
T KOG1914|consen 457 LFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRY 520 (656)
T ss_pred HHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHH
Confidence 9999998876665 589999999999999999999998887532 1333334444444443
No 146
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.44 E-value=0.6 Score=41.70 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=41.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
+..-|.+.|.+..|..=|+.+.++ +-+......-.++.+|...|..++|.+......
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 345578888888888888888765 333345666678888888888888877665543
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.42 E-value=0.033 Score=40.33 Aligned_cols=94 Identities=15% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (425)
+..+...+...|++++|..++++..+.... . ..++..+...+...++++ ++...+.+.....+ .+..++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~---~a~~~~~~~~~~~~---~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-N---ADAYYNLAAAYYKLGKYE---EALEDYEKALELDP---DNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-c---HHHHHHHHHHHHHHHHHH---HHHHHHHHHHhCCC---cchhHHH
Confidence 445667778889999999999988764221 1 234566777777778744 44444444332221 1224788
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
.+...+...|+.++|...|.+...
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHc
Confidence 888888889999999988887765
No 148
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.43 Score=42.89 Aligned_cols=181 Identities=13% Similarity=0.026 Sum_probs=116.0
Q ss_pred hhhhHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 90 LSSLAFPLYMRITEESWFQW-NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
+++.|++++..-.++. | +....+.+-.+|-...++..|-+.|+++... .|....-..| --..+-+.+.+
T Consensus 25 ry~DaI~~l~s~~Er~---p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY--~AQSLY~A~i~--- 94 (459)
T KOG4340|consen 25 RYADAIQLLGSELERS---PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY--QAQSLYKACIY--- 94 (459)
T ss_pred hHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH--HHHHHHHhccc---
Confidence 6677777777766654 3 5556777888888889999999999998763 1121111111 22334455553
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLC--EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
.+++.++..+... |+...-..-+.+-. ..+++..+..+.++.-..| +..+.+..-....+.|+++.|.+=
T Consensus 95 ADALrV~~~~~D~-----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence 3455555555432 11112222223322 3578888888888776443 445555555566789999999999
Q ss_pred HHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042756 247 VNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290 (425)
Q Consensus 247 ~~~m~~~-g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~ 290 (425)
|+...+. |+. ....||.-+.-| +.|+.+.|+++..+.+++|+
T Consensus 167 FqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 167 FQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGI 209 (459)
T ss_pred HHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence 9987765 555 567898877655 56778899999999988775
No 149
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.029 Score=49.73 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC----------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN----------------ELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g----------------~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 302 (425)
.++-....++.|.+-|+..|..+|+.||..+=+.. +-+-+++++++|...|+.||..+-..|++
T Consensus 87 HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn 166 (406)
T KOG3941|consen 87 HVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVN 166 (406)
T ss_pred hHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHH
Confidence 34444444444444455555555555444443221 23457889999999999999999999999
Q ss_pred HHHHHH
Q 042756 303 SCSTIM 308 (425)
Q Consensus 303 ~~~~~~ 308 (425)
++.+-+
T Consensus 167 ~FGr~~ 172 (406)
T KOG3941|consen 167 AFGRWN 172 (406)
T ss_pred Hhcccc
Confidence 887743
No 150
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.29 E-value=0.061 Score=49.25 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
.+|-.++...-+.+.++.|+++|.+..+.... ... +.+..+++..++ .++.+.+..+++...+. ..-+...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~-vy~~~A~~E~~~-~~d~~~A~~Ife~glk~------f~~~~~~ 72 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYH-VYVAYALMEYYC-NKDPKRARKIFERGLKK------FPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--TH-HHHHHHHHHHHT-CS-HHHHHHHHHHHHHH------HTT-HHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHHh-CCCHHHHHHHHHHHHHH------CCCCHHH
Confidence 46778888888888999999999998754222 222 233344443332 34433344444443333 2234568
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG---FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
|...|+.+.+.|+.+.|..+|++.... +.++. ..|...++-=.+.|+++.+.++.+.+.+. .|+......+++-
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~r 149 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDR 149 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCC
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHH
Confidence 999999999999999999999999876 33333 49999999999999999999999998874 3454444444444
Q ss_pred H
Q 042756 269 Y 269 (425)
Q Consensus 269 ~ 269 (425)
|
T Consensus 150 y 150 (280)
T PF05843_consen 150 Y 150 (280)
T ss_dssp T
T ss_pred h
Confidence 4
No 151
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.52 Score=46.13 Aligned_cols=238 Identities=12% Similarity=0.033 Sum_probs=109.0
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCC-------------CchhhhHHHH
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTH-------------PRLSSLAFPL 97 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~-------------~~~~~~a~~l 97 (425)
+.+|.+..|.=.|+.-.+.-+-+..+|-.|=-.-+..++...+...|.+.+.-+..- .+.-..|++.
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 445566666666666555444456666666555555555555666665554432210 0112223333
Q ss_pred HHH-hhhc---CCCcc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 98 YMR-ITEE---SWFQW---NPKLVAEIIAFLDKQGQREEAETLILETLSKLGS-RERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 98 f~~-m~~~---~~~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~-~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
++. +... ....+ +...-+. ..+.....+....++|-++...... .+++ ++..|--.|--.|.++.+.
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd---vQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPD---VQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChh---HHhhhHHHHhcchHHHHHH
Confidence 332 1111 00000 0000000 1222223344555555555433221 2233 3344444455555544444
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
++|+...+..+. |...||-|-..++...+.++|+.-|.+.++..=.--.+=||.-| .|...|.+++|.+.|-.
T Consensus 451 Dcf~~AL~v~Pn------d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI-S~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 451 DCFEAALQVKPN------DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI-SCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHhcCCc------hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh-hhhhhhhHHHHHHHHHH
Confidence 444444443222 22366666666666666666666666666553222223333333 45566666666655553
Q ss_pred HHH---C------CCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 042756 250 MES---D------GTRVDTVCSNMVLSSYGDHNELSRMVL 280 (425)
Q Consensus 250 m~~---~------g~~~~~~~yn~li~~~~~~g~~~~A~~ 280 (425)
... . +-.++...|.+|=.++.-.++.|-+.+
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 321 1 112244566666666666666554433
No 152
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=1.5 Score=46.11 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcc
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 166 (425)
|+..|.-++....+.|.+++-...+.-.+++...+.- =+.||-+|++.++..
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i-----d~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI-----DSELIFAYAKTNRLT 1183 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc-----hHHHHHHHHHhchHH
Confidence 5556777888888888888887766555554443332 256888888888743
No 153
>PLN02789 farnesyltranstransferase
Probab=96.23 E-value=1 Score=41.96 Aligned_cols=168 Identities=8% Similarity=-0.008 Sum_probs=99.4
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQ--REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~--~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~ 167 (425)
.+++++..++.+.+.+. -+..+|+.--..+.+.|+ .+++.++++++.+. .+.+..+|+..--++.+.|++
T Consensus 87 ~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~~-- 158 (320)
T PLN02789 87 DLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGGW-- 158 (320)
T ss_pred hHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhhH--
Confidence 34666777776665542 244455544444455554 36677777777654 333345677777777777774
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc---CCh----hHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcC--
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM---GQP----HEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRL-- 237 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~----~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~-- 237 (425)
+++++.+.+++.... -|...|+.....+.+. |.. ++.+++..+.... .| |...|+.+-..+...
T Consensus 159 -~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 159 -EDELEYCHQLLEEDV---RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred -HHHHHHHHHHHHHCC---CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCc
Confidence 455555555544321 1233777766655554 222 4566666565553 34 556777777777663
Q ss_pred --CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 238 --GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 238 --g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
+...+|.+++.+..+.++ .+......|++.|+..
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHhh
Confidence 344567788877666543 3677888888888753
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.21 E-value=0.27 Score=49.08 Aligned_cols=72 Identities=7% Similarity=-0.124 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 042756 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYN 298 (425)
Q Consensus 223 ~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~ 298 (425)
+...|..+--.....|++++|...+++..+.+ |+...|..+-..+...|+.++|...|++.... .|...||.
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt~~ 490 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENTLY 490 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCchHH
Confidence 34555555444555677777777777766654 56667777777777777777777777765432 45444443
No 155
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.18 E-value=0.022 Score=39.36 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=48.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 200 CEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
.+.|++++|+++|++.... .| +...+-.+..+|.+.|++++|.++++.+... .|+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence 4678899999999999875 34 6677778999999999999999999988876 46655555554
No 156
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.17 E-value=0.59 Score=47.12 Aligned_cols=166 Identities=10% Similarity=0.068 Sum_probs=93.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
-|.+-..++++.+|+.+.+.++..+.. ..-|.-+.+.|+..|+++.|+++|-+-- .++--|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 345556677888888888877776543 3457777788888888888888876422 35667788888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc----cCCchhhHHHHHhhcchhhHHHHHHHHhCCCCccc
Q 042756 275 LSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN----SNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEA 350 (425)
Q Consensus 275 ~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (425)
++.|.++-.+-. |-......|-+=..-+-+.|++..+.+ .......|..|-+.+..++.. .++++-. |+-
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmi---rlv~k~h-~d~ 880 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMI---RLVEKHH-GDH 880 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHH---HHHHHhC-hhh
Confidence 888887765533 212233334333333444555444422 112223344555555444432 2222211 221
Q ss_pred --ceeeccccchhcccCcchhHHHHHHHHHHHHH
Q 042756 351 --MKWDSGETKLDLHGMHLGSAYFIILQWMDEMR 382 (425)
Q Consensus 351 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~ 382 (425)
.|-..+-.-|-..|+...| .+-|-+..
T Consensus 881 l~dt~~~f~~e~e~~g~lkaa-----e~~flea~ 909 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAA-----EEHFLEAG 909 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHH-----HHHHHhhh
Confidence 2334444556667777777 55554443
No 157
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.12 E-value=0.52 Score=47.10 Aligned_cols=124 Identities=11% Similarity=-0.039 Sum_probs=76.7
Q ss_pred cChhHHHHHHHHHHh--c---CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcC--------CCHHHHHHHHHHHHH
Q 042756 187 VKRQALKSMISGLCE--M---GQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRL--------GLLEDMERIVNQMES 252 (425)
Q Consensus 187 p~~~~~~~li~~~~~--~---g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~--------g~~~~a~~~~~~m~~ 252 (425)
.|...|...+.+... . ++.+.|.++|++..+ ..|| ...|..+..++... +++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 444466666666432 2 346677777777776 3554 33444433332221 123444454444333
Q ss_pred C-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 253 D-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 253 ~-g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
. ....+...|.++--.+...|++++|...|++..+.+ |+...|..+-..+...|+.+.+.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence 2 233455778877666667899999999999988764 78888888888888888877764
No 158
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.06 E-value=0.043 Score=44.71 Aligned_cols=70 Identities=11% Similarity=0.131 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK-----DSGIPFSVRT 296 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~t 296 (425)
+...++..+...|+++.|.++...+.... +.|...|-.+|.+|...|+..+|.++|+++. +-|+.|+..|
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555666666666666666666543 2356667777777777777777777666653 3466666554
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.03 E-value=0.32 Score=40.86 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=61.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
....|..+-..+...|++++|...|++..+....+. .....+..+...+.+.|+++.+.+ .+.+.....+ -+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~---~~~~al~~~p---~~~ 106 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-DRSYILYNMGIIYASNGEHDKALE---YYHQALELNP---KQP 106 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCc---ccH
Confidence 445677788888899999999999999876432211 112357788888999999554444 4444443221 123
Q ss_pred hHHHHHHHHHHhcCChhHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
..+..+...|...|+...+..-+
T Consensus 107 ~~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 107 SALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHHcCChHhHhhCH
Confidence 46777777887777755444333
No 160
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.97 E-value=1.4 Score=41.08 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=25.3
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
||..-|-..|.+++..+++++..++... ...| .-|-..+.+|.+.|...+|.++...
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP--IGyepFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKS----KKSP--IGYEPFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC--CChHHHHHHHHHCCCHHHHHHHHHh
Confidence 4444455555555555555444443221 1122 4444445555555554444444443
No 161
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.96 E-value=0.38 Score=37.61 Aligned_cols=105 Identities=11% Similarity=0.116 Sum_probs=76.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC----HHhHHHHHHH
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD----TVCSNMVLSS 268 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~yn~li~~ 268 (425)
+-.++-..|+.++|+.+|++-...|+..+ ...+-.+-+++...|++++|..+|+...... |+ ......+-.+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHH
Confidence 44567778999999999999999887765 3467777888999999999999999887642 33 2222223457
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
+...|+.++|++.+-.... ++...|.--|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 7889999999998877553 23346666666554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=95.89 E-value=0.15 Score=42.57 Aligned_cols=98 Identities=14% Similarity=0.017 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
....|..+...+...|++++|...|++....... +.....+|..+-..+...|+.+. +...+.+...... ...
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-~~~~~~~~~~lg~~~~~~g~~~e---A~~~~~~Al~~~~---~~~ 106 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-PYDRSYILYNIGLIHTSNGEHTK---ALEYYFQALERNP---FLP 106 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCc---CcH
Confidence 3456677777788889999999999988654222 12223467778888888898544 4444444432211 112
Q ss_pred hHHHHHHHHHH-------hcCChhHHHHHHHH
Q 042756 190 QALKSMISGLC-------EMGQPHEAENLIEE 214 (425)
Q Consensus 190 ~~~~~li~~~~-------~~g~~~~a~~~~~~ 214 (425)
.+++.+...+. +.|+++.|...+++
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 35666666666 55666555544443
No 163
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.89 E-value=0.043 Score=37.54 Aligned_cols=55 Identities=4% Similarity=-0.011 Sum_probs=34.8
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
..+.+.|++++|.+.|+...+.. +-+...+..+-..+...|++++|..+|++..+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677777777777766654 12556666666666777777777777776654
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=95.87 E-value=1.3 Score=46.30 Aligned_cols=217 Identities=11% Similarity=0.001 Sum_probs=130.3
Q ss_pred cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhH
Q 042756 50 VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREE 129 (425)
Q Consensus 50 ~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 129 (425)
.+.....+..+|+++-.--....++..+-+...... ....|.+.|+..-+-+.- +..........|++..+++.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~----Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~ 544 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD----DMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEE 544 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHH
Confidence 344556667777777666666667766666654321 345577777776555422 55567778999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHH--HHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhH
Q 042756 130 AETLILETLSKLGSRERELVLFYCNLID--SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207 (425)
Q Consensus 130 A~~l~~~m~~~~~~~~~~~~~~y~~li~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 207 (425)
|..+.-...+. .+.....++-.-. .|-+.+. ...+...+....... .-|...|-.+..+|.++|++..
T Consensus 545 a~~I~l~~~qk----a~a~~~k~nW~~rG~yyLea~n---~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sGry~~ 614 (1238)
T KOG1127|consen 545 AFEICLRAAQK----APAFACKENWVQRGPYYLEAHN---LHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESGRYSH 614 (1238)
T ss_pred HHHHHHHHhhh----chHHHHHhhhhhccccccCccc---hhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcCceeh
Confidence 99983332221 1111111222211 2334444 455666666655433 1356799999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHH--HHHcCCCHHHHHHHHHHHHHC------CCCcCHHhHHHHHHHHHhcCCHHHHH
Q 042756 208 AENLIEEMRVKGLEPSGFEYKCIIY--GYGRLGLLEDMERIVNQMESD------GTRVDTVCSNMVLSSYGDHNELSRMV 279 (425)
Q Consensus 208 a~~~~~~m~~~g~~p~~~ty~~ll~--~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~yn~li~~~~~~g~~~~A~ 279 (425)
|+++|.+... +.|+ .+|...-. .-+..|.+++|...+...... +-.--..++--+...+...|-..+|.
T Consensus 615 AlKvF~kAs~--LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav 691 (1238)
T KOG1127|consen 615 ALKVFTKASL--LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV 691 (1238)
T ss_pred HHHhhhhhHh--cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999998766 4564 34443332 356778888888888776542 11112344444444444455555555
Q ss_pred HHHHHH
Q 042756 280 LWLQKM 285 (425)
Q Consensus 280 ~l~~~M 285 (425)
..|++-
T Consensus 692 d~~eks 697 (1238)
T KOG1127|consen 692 DFFEKS 697 (1238)
T ss_pred HHHHHH
Confidence 555543
No 165
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.84 E-value=0.066 Score=47.54 Aligned_cols=88 Identities=15% Similarity=0.193 Sum_probs=71.3
Q ss_pred ChhHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----------------HHHHHHH
Q 042756 188 KRQALKSMISGLCE-----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL----------------LEDMERI 246 (425)
Q Consensus 188 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~----------------~~~a~~~ 246 (425)
|..+|-+++..|.. .+.+|-..-.++.|.+-|++-|..+|+.||+.+-|-.- -+=+.++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 33466666666654 36778888888999999999999999999998766532 2338899
Q ss_pred HHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 247 VNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 247 ~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
+++|+..|+.||-.+-..|+.+|.+.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 99999999999999999999999988864
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=95.84 E-value=0.1 Score=49.65 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=60.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHH
Q 042756 119 AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG 198 (425)
Q Consensus 119 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 198 (425)
..+...|++++|.++|++..+... .....|..+-.+|.+.|+++. +...+.+.....+ .+...|..+-.+
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P----~~~~a~~~~a~~~~~~g~~~e---Al~~~~~Al~l~P---~~~~a~~~lg~~ 79 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP----NNAELYADRAQANIKLGNFTE---AVADANKAIELDP---SLAKAYLRKGTA 79 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhCc---CCHHHHHHHHHH
Confidence 344566788888888888776422 223356667777777787444 4444433332221 123467777777
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
|...|++++|...|++... +.|+.......
T Consensus 80 ~~~lg~~~eA~~~~~~al~--l~P~~~~~~~~ 109 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGAS--LAPGDSRFTKL 109 (356)
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 8888888888888887776 34544444333
No 167
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.68 E-value=1.1 Score=44.05 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=80.2
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hhHHHHHHHHHH
Q 042756 122 DKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQALKSMISGLC 200 (425)
Q Consensus 122 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 200 (425)
.+.|++.+|.-+|+...+. .|.....|.-|-......++- ..+...+.+...- .|+ ....-+|--.|.
T Consensus 296 m~nG~L~~A~LafEAAVkq----dP~haeAW~~LG~~qaENE~E---~~ai~AL~rcl~L----dP~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQ----DPQHAEAWQKLGITQAENENE---QNAISALRRCLEL----DPTNLEALMALAVSYT 364 (579)
T ss_pred HhcCCchHHHHHHHHHHhh----ChHHHHHHHHhhhHhhhccch---HHHHHHHHHHHhc----CCccHHHHHHHHHHHh
Confidence 5678888888888876654 333344565555555555542 2233333333221 121 223333334444
Q ss_pred hcCChhHHHHHHHHH-----------------------------------------HH-cCCCCCHHHHHHHHHHHHcCC
Q 042756 201 EMGQPHEAENLIEEM-----------------------------------------RV-KGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m-----------------------------------------~~-~g~~p~~~ty~~ll~~~~~~g 238 (425)
..|.=..|+..++.- .. .+..+|..++..|--.|--.|
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 444444444444333 22 233344455555555555666
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+++.|...|+...... +-|..+||-|-..++...+.++|+.-|.+..+
T Consensus 445 efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 6666666666555432 12456666666666666666666666666554
No 168
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=95.65 E-value=2.7 Score=41.98 Aligned_cols=258 Identities=13% Similarity=0.020 Sum_probs=151.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh--cCCCHHHHHHHHHHHH------hcCChHHHHHHHHhhhCCCCC------------
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA--VTRDSKAASRLISKFV------ASSPQFIALNALSHLLSPDTT------------ 86 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~--~~~d~~~~~~ll~~~~------~~~~~~~a~~~~~~~l~~~~~------------ 86 (425)
..+..+.|....|.++++...+. -.|+...|.....-+- ++|..+.+++.+..--.+-..
T Consensus 150 Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~ 229 (700)
T KOG1156|consen 150 AVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLL 229 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHH
Confidence 45556677888899999988888 3688877766655443 446666666666543111000
Q ss_pred -CCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHH-hcCChhHHH-HHHHHHHHhcCCCchh----------------
Q 042756 87 -HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD-KQGQREEAE-TLILETLSKLGSRERE---------------- 147 (425)
Q Consensus 87 -~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~-~~g~~~~A~-~l~~~m~~~~~~~~~~---------------- 147 (425)
.-+++++|..+|..+..++ ||..-|...+..+. +..+.-++. .+|....+.......+
T Consensus 230 ~kl~~lEeA~~~y~~Ll~rn---Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~ 306 (700)
T KOG1156|consen 230 MKLGQLEEAVKVYRRLLERN---PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI 306 (700)
T ss_pred HHHhhHHhHHHHHHHHHhhC---chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH
Confidence 0125789999999998886 67666665444443 443333333 6666554321100000
Q ss_pred ------------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC---------CCCccChhHHH--HHHHHHHhcCC
Q 042756 148 ------------LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---------SSVYVKRQALK--SMISGLCEMGQ 204 (425)
Q Consensus 148 ------------~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~---------~~~~p~~~~~~--~li~~~~~~g~ 204 (425)
.+.++..+...|-.-...+-.++..-.+....... ..-.|....|. .++..|-+.|+
T Consensus 307 vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~ 386 (700)
T KOG1156|consen 307 VDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD 386 (700)
T ss_pred HHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence 00133334333332221111122222222211111 01135555444 56778888999
Q ss_pred hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 205 PHEAENLIEEMRVKGLEPSGF-EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
++.|..+.+....+ .|+.+ -|-.=-..+..+|++++|...+++..+... +|...=.--..-..+..++++|.++..
T Consensus 387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999988764 55533 444445778889999999999998877542 344333345555667889999999988
Q ss_pred HHHhCCC
Q 042756 284 KMKDSGI 290 (425)
Q Consensus 284 ~M~~~g~ 290 (425)
...+.|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 8887775
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=95.64 E-value=0.045 Score=39.81 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=44.0
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hhHHHHHHHHHHhc
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQALKSMISGLCEM 202 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~ 202 (425)
.|+++.|+.+|+++.+.....+ +.. .+-.+-.+|.+.|+ ..+++..+.+. . ..|+ ....-.+-.+|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~-~~~-~~~~la~~~~~~~~---y~~A~~~~~~~-~----~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP-NSA-YLYNLAQCYFQQGK---YEEAIELLQKL-K----LDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH-HHH-HHHHHHHHHHHTTH---HHHHHHHHHCH-T----HHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHCCCCh-hHH-HHHHHHHHHHHCCC---HHHHHHHHHHh-C----CCCCCHHHHHHHHHHHHHh
Confidence 4677778887777776533211 222 23336777777777 44455555441 1 1111 12333446777777
Q ss_pred CChhHHHHHHHH
Q 042756 203 GQPHEAENLIEE 214 (425)
Q Consensus 203 g~~~~a~~~~~~ 214 (425)
|++++|+++|++
T Consensus 72 ~~y~eAi~~l~~ 83 (84)
T PF12895_consen 72 GKYEEAIKALEK 83 (84)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 888888777764
No 170
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.57 E-value=0.09 Score=42.79 Aligned_cols=71 Identities=17% Similarity=0.192 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCcCHHhH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-----DGTRVDTVCS 262 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~y 262 (425)
+...++..+...|++++|.++........ +-|...|..+|.+|...|+...|.++|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 66777788888999999999999888752 33677999999999999999999999987753 4888876553
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.54 E-value=2.1 Score=39.94 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=76.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
+.+..|.-+...|+...|.++-.+.+ .||..-|-..+.++++.++|++-+++... +.+++-|-..+..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 66667778888888888888877663 47888888999999999999888876432 235678899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+.|+..+|..+..++ ++.--+..|.+.|.+..+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEA 281 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHH
Confidence 999999888887771 223445556666666554
No 172
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=1.7 Score=38.66 Aligned_cols=147 Identities=18% Similarity=0.103 Sum_probs=100.3
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc-CCcccH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGF 168 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~-g~~~~~ 168 (425)
..++|++...... +......=+..+.+..+++-|.+.++.|.+. +.+ .|.+-|-.++.+. +.-+++
T Consensus 123 ~~deAl~~~~~~~-------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded--~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 123 DFDEALKALHLGE-------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DED--ATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred ChHHHHHHHhccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chH--HHHHHHHHHHHHHhccchhh
Confidence 4566666554411 3334444466677888999999999999864 222 2445566666542 112238
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-HHHHHHHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL-LEDMERIV 247 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~-~~~a~~~~ 247 (425)
.+++-++.++..+ ..|+..+.|....++...|++++|..++++...+.-. +..|...+|-+--..|. .+...+..
T Consensus 190 qdAfyifeE~s~k---~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 190 QDAFYIFEELSEK---TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhHHHHHHHHhcc---cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 8899999988653 5577779999999999999999999999999987432 45666666655555554 45567777
Q ss_pred HHHHHC
Q 042756 248 NQMESD 253 (425)
Q Consensus 248 ~~m~~~ 253 (425)
.+++..
T Consensus 266 ~QLk~~ 271 (299)
T KOG3081|consen 266 SQLKLS 271 (299)
T ss_pred HHHHhc
Confidence 777664
No 173
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=95.49 E-value=0.81 Score=46.21 Aligned_cols=129 Identities=24% Similarity=0.261 Sum_probs=78.8
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+.+|+.+.+.+..+. . .+.-|..+..-|+..|+++.|+++|-+-. .++--|..|.+.|++ +
T Consensus 747 ew~kai~ildniqdqk-~--~s~yy~~iadhyan~~dfe~ae~lf~e~~------------~~~dai~my~k~~kw---~ 808 (1636)
T KOG3616|consen 747 EWKKAISILDNIQDQK-T--ASGYYGEIADHYANKGDFEIAEELFTEAD------------LFKDAIDMYGKAGKW---E 808 (1636)
T ss_pred hhhhhHhHHHHhhhhc-c--ccccchHHHHHhccchhHHHHHHHHHhcc------------hhHHHHHHHhccccH---H
Confidence 4667888888877665 2 33457778888999999999999887731 346678889999984 4
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
+++++..+... .......|-+--.-.-+.|++.+|.++|-... .|+ ..|.+|-+.|..++..++.+.
T Consensus 809 da~kla~e~~~----~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 809 DAFKLAEECHG----PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHhcC----chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 55555544422 22233455555555556666666666554321 122 234455555555555555443
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.32 E-value=0.34 Score=43.77 Aligned_cols=102 Identities=9% Similarity=-0.050 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCcCHHhHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG----FEYKCIIYGYGRLGLLEDMERIVNQMESDG--TRVDTVCSN 263 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~yn 263 (425)
..|+.-+.-+.+.|++++|...|+.+... .|+. ..+--+-.+|...|++++|...|+.+.+.- -......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46777676667789999999999999885 3442 466677788999999999999999998641 111244455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
.+...+...|+.++|.+.|++.++. .|+..
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 5566777899999999999998875 45543
No 175
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.28 E-value=0.085 Score=37.60 Aligned_cols=59 Identities=22% Similarity=0.191 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK----G-LEPS-GFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
+|+.+-..|...|++++|+..|++..+. | -.|+ ..++..+-.+|.+.|++++|.+++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4444555555555555555555544422 1 1121 33444555555555555555555544
No 176
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.26 E-value=0.12 Score=35.75 Aligned_cols=60 Identities=8% Similarity=-0.064 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHH
Q 042756 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKM 285 (425)
Q Consensus 225 ~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g-~~~~A~~l~~~M 285 (425)
.+|..+-..+...|++++|...|+...+.. +-+...|..+-.+|...| ++++|++.|++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444445555555555555444432 113444444444555554 355555554443
No 177
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.21 E-value=0.1 Score=35.66 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=44.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
-..+.+.|++++|.+.|++..+.. | +...+..+-.++...|++++|..+|+...+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456778889999999999988864 5 4567778888888999999999998888654
No 178
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=95.18 E-value=4.3 Score=41.43 Aligned_cols=177 Identities=11% Similarity=0.027 Sum_probs=106.1
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~ 177 (425)
+.++.... +.|++.+|..+.-+..+.|+++.+-+.|++....-.. . ...|..+-..|...|. -..+..+++.
T Consensus 311 ~~k~r~~~-~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~---~e~w~~~als~saag~---~s~Av~ll~~ 382 (799)
T KOG4162|consen 311 LRKLRLKK-FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-E---HERWYQLALSYSAAGS---DSKAVNLLRE 382 (799)
T ss_pred HHHHHHhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-h---HHHHHHHHHHHHHhcc---chHHHHHHHh
Confidence 34444444 7799999999999999999999999999987632111 1 1134444444444444 2334444444
Q ss_pred HhhcCCCCccCh-----------------------------------------hHHHHHHHHHHhc-----------CCh
Q 042756 178 LVNSSSSVYVKR-----------------------------------------QALKSMISGLCEM-----------GQP 205 (425)
Q Consensus 178 ~~~~~~~~~p~~-----------------------------------------~~~~~li~~~~~~-----------g~~ 205 (425)
...... .|+. ..|-.+--+|... ...
T Consensus 383 ~~~~~~--~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h 460 (799)
T KOG4162|consen 383 SLKKSE--QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALH 460 (799)
T ss_pred hccccc--CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHH
Confidence 433221 1211 1222222222211 122
Q ss_pred hHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 206 HEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 206 ~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
.++++.+++..+.+ -.|+..-|-++ -|+-.++++.|.+...+..+.+-.-+...|.-|.-.+...+++.+|+.+.+.
T Consensus 461 ~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 34444444444332 23433333333 3666788999999999888876667899999999999999999999998887
Q ss_pred HH
Q 042756 285 MK 286 (425)
Q Consensus 285 M~ 286 (425)
..
T Consensus 539 al 540 (799)
T KOG4162|consen 539 AL 540 (799)
T ss_pred HH
Confidence 53
No 179
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.12 E-value=1.1 Score=41.24 Aligned_cols=68 Identities=13% Similarity=0.138 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHh--c----CChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDK--Q----GQREEAETLILETLSKLGSRERELVLFYCNLIDS 158 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~ 158 (425)
.+++.+.+++.|.+.+ +.-+..+|-+....... . -...+|.++|+.|++.-.....+.-..+..|+..
T Consensus 77 ~~~~~~~~y~~L~~~g-Fk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~ 150 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAG-FKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM 150 (297)
T ss_pred HHHHHHHHHHHHHHhc-cCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc
Confidence 4566677777777776 55455444332222222 1 1255677788888775333332222344444433
No 180
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=95.04 E-value=2.8 Score=38.65 Aligned_cols=184 Identities=8% Similarity=0.009 Sum_probs=121.3
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+..|+.....+.+- .+|++..|..-..+|...|+...|..=+....+- ...++. .+--+-..+-..|+ ++
T Consensus 170 D~~~ai~~i~~llEi--~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL---s~DnTe-~~ykis~L~Y~vgd---~~ 240 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEI--QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKL---SQDNTE-GHYKISQLLYTVGD---AE 240 (504)
T ss_pred chhhHHHHHHHHHhc--CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccchH-HHHHHHHHHHhhhh---HH
Confidence 455566667776653 4599999999999999999999887655554332 222222 22345556667888 67
Q ss_pred HHHHHHHHHhhcCCCCccChh----HHHHH---------HHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQ----ALKSM---------ISGLCEMGQPHEAENLIEEMRVKGLEPSGF---EYKCIIYG 233 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~----~~~~l---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---ty~~ll~~ 233 (425)
..+..+++...- -||.. .|-.| +....+.+++.++++-.+...+..-.-..+ .+..+-.+
T Consensus 241 ~sL~~iRECLKl----dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 241 NSLKEIRECLKL----DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHcc----CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 777777776542 24432 22211 123344677777777777776653221223 34456667
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 234 YGRLGLLEDMERIVNQMESDGTRVD-TVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~~~-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
+...|.+.+|.+.-.+..+. .|| +.++.-=..+|.-..+++.|+.=|+...+.
T Consensus 317 ~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 77888899999988887764 344 778888888898888899999988887764
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.95 E-value=0.7 Score=37.79 Aligned_cols=93 Identities=8% Similarity=-0.096 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.-.+-.-+...|++++|..+|+-...- -|. ..-|-.+--++-..|++++|...|........ -|...+-.+-.++.
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 334445566789999999999988773 343 34555666677778899999999998887764 47888888888999
Q ss_pred hcCCHHHHHHHHHHHHh
Q 042756 271 DHNELSRMVLWLQKMKD 287 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~ 287 (425)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999987664
No 182
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=94.78 E-value=1.1 Score=45.95 Aligned_cols=132 Identities=11% Similarity=0.110 Sum_probs=87.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+...|...-..+-..|+.+.|+.+|...+. |-++++-.|-.|. .+++..+.++.. |.
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------~fs~VrI~C~qGk---~~kAa~iA~esg--------d~ 967 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD------------YFSMVRIKCIQGK---TDKAARIAEESG--------DK 967 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh------------hhhheeeEeeccC---chHHHHHHHhcc--------cH
Confidence 556677777777788999999998887542 4578888888888 455555555432 23
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---------------CCHHHHHHHHHHHHHCC
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL---------------GLLEDMERIVNQMESDG 254 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---------------g~~~~a~~~~~~m~~~g 254 (425)
...-.+-+.|-+.|++.+|..+|.+. .+|.+.|..|-.+ .+.-.|.++|++. |
T Consensus 968 AAcYhlaR~YEn~g~v~~Av~FfTrA---------qafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g 1035 (1416)
T KOG3617|consen 968 AACYHLARMYENDGDVVKAVKFFTRA---------QAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---G 1035 (1416)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH---------HHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---c
Confidence 37778899999999999999999976 4455555443222 2233344444432 2
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 042756 255 TRVDTVCSNMVLSSYGDHNELSRMVLW 281 (425)
Q Consensus 255 ~~~~~~~yn~li~~~~~~g~~~~A~~l 281 (425)
.. +.--+..|-+.|.+.+|+++
T Consensus 1036 ~~-----~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1036 GY-----AHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred hh-----hhHHHHHHHhhcchHHHHHH
Confidence 11 23345567788888888775
No 183
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.77 E-value=0.18 Score=34.88 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=53.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-LLEDMERIVNQMES 252 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~a~~~~~~m~~ 252 (425)
..+|..+-..+.+.|++++|+..|++..+.. +-+...|..+-.+|.+.| ++++|.+.|+...+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4588999999999999999999999999863 225668889999999999 79999999988765
No 184
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.73 E-value=1.8 Score=34.78 Aligned_cols=124 Identities=17% Similarity=0.121 Sum_probs=83.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
++..+.+.+.......+++.+...+. ..+ ..++.++..|++... .+..+.+... . +......++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~---~~~~~li~ly~~~~~----~~ll~~l~~~---~-----~~yd~~~~~ 76 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENP---ALQTKLIELYAKYDP----QKEIERLDNK---S-----NHYDIEKVG 76 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cch---hHHHHHHHHHHHHCH----HHHHHHHHhc---c-----ccCCHHHHH
Confidence 88888888899999999998877642 232 367889999998754 3444444421 1 112556688
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL-GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
+.|.+.+.++++.-++.++.. |...+..+... ++++.|.+++..- -+...|..++..+..
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 888888888888888887633 23334444444 7888888877751 255678777776654
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.69 E-value=3 Score=37.23 Aligned_cols=160 Identities=11% Similarity=0.066 Sum_probs=102.5
Q ss_pred hhhhHHHHHHHhhhcCCCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh-------
Q 042756 90 LSSLAFPLYMRITEESWFQWNP-KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------- 161 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~------- 161 (425)
.++.|.+.|+.+......++-. ...-.+..++.+.+++++|...|++..+.....+ .. -|...+.+.+.
T Consensus 47 ~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~-~~--~~a~Y~~g~~~~~~~~~~ 123 (243)
T PRK10866 47 NWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NI--DYVLYMRGLTNMALDDSA 123 (243)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC-ch--HHHHHHHHHhhhhcchhh
Confidence 6778888888877654221111 1123466788899999999999999987533322 21 23444555431
Q ss_pred ----------cCCcccHHHHHHHHHHHhhcCCC--CccChhH------------HHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 162 ----------HDSKRGFDDTYARLNQLVNSSSS--VYVKRQA------------LKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 162 ----------~g~~~~~~~~~~~~~~~~~~~~~--~~p~~~~------------~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
..|...+.+++..+.+....-+. ..|+... --.+.+.|.+.|.+.-|..=|+.+.+
T Consensus 124 ~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~ 203 (243)
T PRK10866 124 LQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLR 203 (243)
T ss_pred hhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 11333355666666666543221 1122211 11344668889999999999999987
Q ss_pred c--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 218 K--GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 218 ~--g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
. +........-.+..+|.+.|..++|.++...+..
T Consensus 204 ~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 204 DYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 6 4445566788899999999999999988876654
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.21 Score=44.88 Aligned_cols=101 Identities=17% Similarity=0.169 Sum_probs=73.1
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHH
Q 042756 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200 (425)
Q Consensus 121 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 200 (425)
+.+.+++++|+..|.+..+- .|.+.+-|..=-.+|++.|..+.+.+..+.....-+.. ..+|..|-.+|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~y------skay~RLG~A~~ 160 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHY------SKAYGRLGLAYL 160 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHH------HHHHHHHHHHHH
Confidence 66788999999999998763 33334467888889999998544443333332221111 248999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 042756 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG 233 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~ 233 (425)
..|++++|.+.|++-.+ +.|+..+|-.=|+.
T Consensus 161 ~~gk~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred ccCcHHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 99999999999998877 78888887766544
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.42 E-value=5.8 Score=39.34 Aligned_cols=151 Identities=10% Similarity=0.048 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHH--------HHHHcCCCC
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE--------EMRVKGLEP 222 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~--------~m~~~g~~p 222 (425)
.+.+++....+.... ....+...+.+.....+. -...+--+++......|+++.|.+++. .+.+.+-.|
T Consensus 341 ~~~~ll~~~t~~~~~-~~~ka~e~L~~~~~~~p~--~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P 417 (652)
T KOG2376|consen 341 LFPILLQEATKVREK-KHKKAIELLLQFADGHPE--KSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP 417 (652)
T ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHHhccCCc--hhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh
Confidence 456777776655432 244455555544333211 112355566777788999999999999 555555555
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042756 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESD--GTRVD----TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296 (425)
Q Consensus 223 ~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~----~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 296 (425)
.+...+...+.+.++-+.|..++.+-..- .-.+. ..++--+...-.+.|+.++|..+++++.+.. .+|..+
T Consensus 418 --~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~ 494 (652)
T KOG2376|consen 418 --GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDL 494 (652)
T ss_pred --hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHH
Confidence 67777888888888877787777765431 11122 2334444444567899999999999998753 678999
Q ss_pred HHHHHHHHHHH
Q 042756 297 YNSVLNSCSTI 307 (425)
Q Consensus 297 ~~~ll~~~~~~ 307 (425)
...++.+|++.
T Consensus 495 l~~lV~a~~~~ 505 (652)
T KOG2376|consen 495 LVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHhc
Confidence 99999999873
No 188
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.37 E-value=0.27 Score=34.91 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHhcCCcccHHH
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSK---LGSRERELVLFYCNLIDSFCKHDSKRGFDD 170 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~~~~~y~~li~~~~~~g~~~~~~~ 170 (425)
..+|+.+-..|...|++++|++.|++..+. .+...+....++..+-..|...|+++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 457888999999999999999999987642 222223335566667777777777443333
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.35 E-value=0.34 Score=33.79 Aligned_cols=56 Identities=7% Similarity=-0.127 Sum_probs=35.7
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
..|.+.+++++|.++++.+...+- .+...|...-..|.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 355666677777777776666532 25556666666667777777777777776643
No 190
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.35 E-value=7 Score=39.99 Aligned_cols=340 Identities=9% Similarity=-0.047 Sum_probs=183.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCc----------------
Q 042756 26 TLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPR---------------- 89 (425)
Q Consensus 26 ~~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~---------------- 89 (425)
.++.....|.+..+-+.|++......-....|+.+-..|..+|....|.+++...+.....+++
T Consensus 329 Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~ 408 (799)
T KOG4162|consen 329 LTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLK 408 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchh
Confidence 3677788889999999999987665566788999999999999999999999988766532221
Q ss_pred ----hhhhHHHHHHHhh-hcCCCccCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHhcCCCchhHHHHHH
Q 042756 90 ----LSSLAFPLYMRIT-EESWFQWNPKLVAEIIAFLDKQ-----------GQREEAETLILETLSKLGSRERELVLFYC 153 (425)
Q Consensus 90 ----~~~~a~~lf~~m~-~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~A~~l~~~m~~~~~~~~~~~~~~y~ 153 (425)
-.+.|.++.+... +.+.+.|- .|-.+--+|... ....++++.+++-.+.+..++ . +..|-
T Consensus 409 ~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp-~-~if~l 484 (799)
T KOG4162|consen 409 LVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP-L-VIFYL 484 (799)
T ss_pred hhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc-h-HHHHH
Confidence 1344445544322 22333333 333333333321 124467777777766544322 2 33444
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCC-----------
Q 042756 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLE----------- 221 (425)
Q Consensus 154 ~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~----------- 221 (425)
++-.+.. ++ +.+|.+...+...-++. -+...|..+.-.+...+++.+|+.+.+.-... |..
T Consensus 485 alq~A~~--R~---l~sAl~~~~eaL~l~~~--~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 485 ALQYAEQ--RQ---LTSALDYAREALALNRG--DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred HHHHHHH--Hh---HHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 4444433 34 45555555555444322 23347877777777778888887776655432 220
Q ss_pred -------CCHHHHHHHHHHHHc---------C--------------CCHHHHHHHHHHH--------HHCC---------
Q 042756 222 -------PSGFEYKCIIYGYGR---------L--------------GLLEDMERIVNQM--------ESDG--------- 254 (425)
Q Consensus 222 -------p~~~ty~~ll~~~~~---------~--------------g~~~~a~~~~~~m--------~~~g--------- 254 (425)
--..|...++...-+ . ++..+|.+....+ +..|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 011122222211110 0 0111111111110 1111
Q ss_pred CCc--C------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cC
Q 042756 255 TRV--D------TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SN 317 (425)
Q Consensus 255 ~~~--~------~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~ 317 (425)
+.| + ...|......+.+.+..++|..++.+....- .-....|.-.-..+...|.++.++. +.
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 111 1 2345556667778888888887777765431 1122333333233444555555533 22
Q ss_pred Cch---hhHHHHHhhcchhhHH---HHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 318 DFP---LSILELTEVLNEEEVS---VVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 318 ~~~---~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.++ .+-..+...|...-+. .+.+.++.+ .-+...|-.+-..+-+.|+.+.| .++|....+
T Consensus 717 hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~A-----aecf~aa~q 782 (799)
T KOG4162|consen 717 HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQA-----AECFQAALQ 782 (799)
T ss_pred CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHH-----HHHHHHHHh
Confidence 222 2222455555433222 233333332 13446788899999999999999 899987765
No 191
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=94.33 E-value=0.77 Score=37.55 Aligned_cols=92 Identities=11% Similarity=-0.074 Sum_probs=67.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
+-.-+...|++++|.++|+....- ++....-|-.|--.+-..|+++++.+++.....+.++.. ..+-.+-
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp------~~~~~ag 110 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP------QAPWAAA 110 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc------hHHHHHH
Confidence 455566789999999999998764 222233455677777788887777777777666544332 3778888
Q ss_pred HHHHhcCChhHHHHHHHHHHHc
Q 042756 197 SGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
.++...|+.+.|.+-|+.....
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8999999999999999877654
No 192
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.12 E-value=1.2 Score=42.92 Aligned_cols=63 Identities=13% Similarity=0.010 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG----FEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
...|+.+-.+|.+.|++++|+..|++..+ +.|+. .+|..+-.+|.+.|++++|...++...+.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46888899999999999999999998877 45663 46889999999999999999999887774
No 193
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=6.8 Score=38.89 Aligned_cols=141 Identities=12% Similarity=-0.036 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHH--------HHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 205 PHEAENLIEEMRVKGLEPS--GFEYKCIIYGYGRLGLLEDMERIVN--------QMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~--------~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
..++.+++...-+. .|. ..+--.++......|+++.|.+++. .+.+.+..|-. -.+++..|.+.++
T Consensus 357 ~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 357 HKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKD 432 (652)
T ss_pred HhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccC
Confidence 45555555555443 222 2344455566777788888877777 55555554443 3455666666666
Q ss_pred HHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcch-hhHHHHHHHHhCCCCcccc
Q 042756 275 LSRMVLWLQKMKD--SGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE-EEVSVVKELEDSSVLDEAM 351 (425)
Q Consensus 275 ~~~A~~l~~~M~~--~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 351 (425)
.+.|..++++.+. ..-.+......+++.-.+. |+ .+.|.. ++...++++++. ..+|..
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~---f~---------------lr~G~~~ea~s~leel~k~-n~~d~~ 493 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE---FK---------------LRHGNEEEASSLLEELVKF-NPNDTD 493 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH---HH---------------HhcCchHHHHHHHHHHHHh-CCchHH
Confidence 6667777766542 1112333333333332221 11 112333 333445555542 235666
Q ss_pred eeeccccchhcccCcchh
Q 042756 352 KWDSGETKLDLHGMHLGS 369 (425)
Q Consensus 352 ~~~~li~~~~~~~~~~~a 369 (425)
+.-.++.+|++.. +++|
T Consensus 494 ~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 494 LLVQLVTAYARLD-PEKA 510 (652)
T ss_pred HHHHHHHHHHhcC-HHHH
Confidence 6777777777543 4555
No 194
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.04 E-value=2.4 Score=33.48 Aligned_cols=138 Identities=12% Similarity=0.133 Sum_probs=72.2
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc
Q 042756 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 202 (425)
-.|.+++..++..+...... ..-||=+|.-....-+ .+..++.+.....-.. +.| ..-.-.++++|++.
T Consensus 14 ldG~V~qGveii~k~v~Ssn------i~E~NWvICNiiDaa~---C~yvv~~LdsIGkiFD-is~-C~NlKrVi~C~~~~ 82 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSSN------IKEYNWVICNIIDAAD---CDYVVETLDSIGKIFD-ISK-CGNLKRVIECYAKR 82 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS-------HHHHTHHHHHHHHH-----HHHHHHHHHHHGGGS--GGG--S-THHHHHHHHHT
T ss_pred HhchHHHHHHHHHHHcCcCC------ccccceeeeecchhhc---hhHHHHHHHHHhhhcC-chh-hcchHHHHHHHHHh
Confidence 34788888888888775421 1123445555544444 5566666666543321 111 01223445555544
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 042756 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~ 282 (425)
|-. ..-+...++...++|+-+.-.++..++.+.+ .+++...-.+-.+|.+.|+..++-+++
T Consensus 83 n~~------------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 83 NKL------------------SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp T---------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cch------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 422 2334455666777777777777777766422 456666666777777777777777777
Q ss_pred HHHHhCCC
Q 042756 283 QKMKDSGI 290 (425)
Q Consensus 283 ~~M~~~g~ 290 (425)
++.-+.|+
T Consensus 144 ~~ACekG~ 151 (161)
T PF09205_consen 144 KEACEKGL 151 (161)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhch
Confidence 77777665
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.89 E-value=4.5 Score=38.78 Aligned_cols=144 Identities=10% Similarity=0.050 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH-HH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY-KC 229 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty-~~ 229 (425)
+|...|++.-+..- +..+-.+|.+....+ .+.+++..++++|..++ .|+..-|.++|+.-... -||...| +.
T Consensus 399 v~C~~~N~v~r~~G---l~aaR~~F~k~rk~~-~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 399 VFCVHLNYVLRKRG---LEAARKLFIKLRKEG-IVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred HHHHHHHHHHHHhh---HHHHHHHHHHHhccC-CCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHH
Confidence 34445555444333 333333333332222 34455566666666555 34555666666554332 3343333 33
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
.+.-+.+.++-+.|..+|+.-..+ +..+ ...|..+|+-=..-|+...|..+=++|.+. .|-..+.....+.|
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 445555566666666666632221 0011 345666666666666666666665555542 45555555544444
No 196
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.71 E-value=7.5 Score=39.42 Aligned_cols=41 Identities=10% Similarity=-0.027 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhh
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHL 80 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~ 80 (425)
-+++|.++.+. .|-...|..+.......-..+.|...|.+.
T Consensus 678 gledA~qfiEd-----nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 678 GLEDAIQFIED-----NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred chHHHHHHHhc-----CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 34455555444 588888888877777666666666666554
No 197
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.66 E-value=4.3 Score=35.09 Aligned_cols=157 Identities=13% Similarity=0.083 Sum_probs=71.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
.-..+.+.|++++|.+.|+.+.......+.. ....-.+..++.+.|+++.+...++.+.+.-+.+... .+-..+
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a-~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-----~~A~Y~ 84 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYA-PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-----DYALYM 84 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-----HHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-----hhHHHH
Confidence 3444556677888888888877653332222 2233456777777777666666666666654444221 222222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLE---PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
.+.+.-....... ....... --...|..++.-|-...-..+|.+.+..+.+. =...--.+..-|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 2222111111110 0000000 00124444555555555555665555555432 1111122445566677
Q ss_pred CHHHHHHHHHHHHhC
Q 042756 274 ELSRMVLWLQKMKDS 288 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~ 288 (425)
.+..|..-|+.+++.
T Consensus 156 ~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 156 KYKAAIIRFQYVIEN 170 (203)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 776676666666654
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.66 E-value=1 Score=40.62 Aligned_cols=101 Identities=18% Similarity=0.121 Sum_probs=82.2
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHhcCCHH
Q 042756 199 LCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELS 276 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~~g~~~ 276 (425)
+.+.+++++|+..|.+... +.| |.+-|..=--+|.+.|.++.|.+=.+.-.+- .| -..+|..|-.+|...|+++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence 5678999999999999987 455 5677778888999999999998877766653 23 3678999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 277 RMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 277 ~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
+|++.|++..+ +.|+-.+|-.=+..-.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHHHHH
Confidence 99999999775 5898888877766543
No 199
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=5 Score=36.38 Aligned_cols=128 Identities=8% Similarity=-0.005 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH---cCCCHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYG---RLGLLEDM 243 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~---~~g~~~~a 243 (425)
+++....++......+ -|...|-.|-..|.+.|+++.|..-|..-.+. |-. ...+..+-.++. ...+-.++
T Consensus 138 ~~~l~a~Le~~L~~nP---~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n--~~~~~g~aeaL~~~a~~~~ta~a 212 (287)
T COG4235 138 MEALIARLETHLQQNP---GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDN--PEILLGLAEALYYQAGQQMTAKA 212 (287)
T ss_pred HHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCCcccHHH
Confidence 4444555555444432 25569999999999999999999999998874 333 344444444433 33346779
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 244 ~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
..+|++...... -|+.+-.-|-..+...|++.+|...++.|.+. -|.......+|+.
T Consensus 213 ~~ll~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 213 RALLRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 999999987642 36677777778899999999999999999976 4555566666654
No 200
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=5.7 Score=35.16 Aligned_cols=30 Identities=17% Similarity=0.181 Sum_probs=14.8
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
|...|.-+-..|...|++++|.-.++++.-
T Consensus 153 D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 153 DQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred cHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 333555555555555555555555555444
No 201
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.08 E-value=4.2 Score=39.83 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=94.6
Q ss_pred HHHHHHhhHHHHHHHHH--HhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHH--HHHhhh
Q 042756 28 VQCLTARLTKQGQRFLS--SLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPL--YMRITE 103 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~--~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~l--f~~m~~ 103 (425)
-.++++++.+++.++.+ .+...+ +..-.+.+++-+-+.|-.+.|+.+...-- .+++.|+++ ++.-.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD-------HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------HHHHHHHHCT-HHHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH-------HHhHHHHhcCCHHHHHH
Confidence 44577888888766664 222112 25557889999999999999988765531 134444433 111111
Q ss_pred cCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC
Q 042756 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (425)
--.-..+...|..|-....+.|+++-|++.|.+.. -|..|+-.|.-.|+.+++.+..+.... .+
T Consensus 340 ~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------------d~~~L~lLy~~~g~~~~L~kl~~~a~~---~~- 403 (443)
T PF04053_consen 340 IAKELDDPEKWKQLGDEALRQGNIELAEECYQKAK------------DFSGLLLLYSSTGDREKLSKLAKIAEE---RG- 403 (443)
T ss_dssp HCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------------HHHHHHHHHHCT-HHHHHHHHHHHHH---TT-
T ss_pred HHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------------CccccHHHHHHhCCHHHHHHHHHHHHH---cc-
Confidence 11122477789999999999999999999998853 156788888888985444444333222 22
Q ss_pred CCccChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 042756 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 184 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (425)
-+|....++.-.|+.++..+++.+-
T Consensus 404 -------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 -------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp --------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred -------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 6788888888899999988887653
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.92 E-value=8.2 Score=38.22 Aligned_cols=166 Identities=12% Similarity=0.065 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHhc--CCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKH--DSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~y~~li~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
..+++..+=.||-+.+++++.+-.+..+...+-. ..+|...+..++.. +.. ....+-+.+..+.. .+|+.
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~-~~~~a~~lL~~~~~----~yP~s 266 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV-PLEEAEELLEEMLK----RYPNS 266 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC-CHHHHHHHHHHHHH----hCCCc
Confidence 3356666666888999998888655333222211 12455555555544 221 14555555555543 34665
Q ss_pred hHHHHHH-HHHHhcCChhHHHHHHHHHHHcCC-C--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 190 QALKSMI-SGLCEMGQPHEAENLIEEMRVKGL-E--PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 190 ~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~-~--p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
..|...- +.+...|++++|++.|++...... . .....+=-+.-.+.-.++|++|.+.|..+.+.. ..+...|.-+
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~ 345 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYL 345 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHH
Confidence 5555444 334457999999999997654211 1 122233334455788899999999999998743 2356666666
Q ss_pred HHHH-HhcCCH-------HHHHHHHHHHH
Q 042756 266 LSSY-GDHNEL-------SRMVLWLQKMK 286 (425)
Q Consensus 266 i~~~-~~~g~~-------~~A~~l~~~M~ 286 (425)
..+| ...|+. ++|.++|.+..
T Consensus 346 ~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 346 AAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6555 367777 88888888864
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=92.70 E-value=0.99 Score=43.43 Aligned_cols=65 Identities=6% Similarity=-0.125 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT----VCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 222 p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
.+...++.+-.+|.+.|++++|...|+...+. .|+. .+|..+--+|...|+.++|+..|++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35779999999999999999999999997775 4553 46999999999999999999999998875
No 204
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.64 E-value=8.3 Score=35.56 Aligned_cols=134 Identities=7% Similarity=0.028 Sum_probs=82.3
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHH--HHHHHHhcCCc-ccHHHHHHHHHHHhhcCCCCc-cChhHHHHHHHHHHhc
Q 042756 127 REEAETLILETLSKLGSRERELVLFYCN--LIDSFCKHDSK-RGFDDTYARLNQLVNSSSSVY-VKRQALKSMISGLCEM 202 (425)
Q Consensus 127 ~~~A~~l~~~m~~~~~~~~~~~~~~y~~--li~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~li~~~~~~ 202 (425)
+++...+++.|.+.+.....- +|-+ +|.......++ +.+..+..++..|....+.++ ++-.++.+|+.. ..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y---~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~ 152 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEY---LYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TS 152 (297)
T ss_pred HHHHHHHHHHHHHhccCccCh---HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cc
Confidence 556777888888876654421 2212 22222222222 225566777777766654443 566788888776 33
Q ss_pred C----ChhHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 203 G----QPHEAENLIEEMRVKGLEPS-G-FEYKCIIYGYGRLGL--LEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 203 g----~~~~a~~~~~~m~~~g~~p~-~-~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
+ -.+.+..+|+.+...|...+ . ...+.++..+-.... +..+.++++.+.+.|+++....|..+
T Consensus 153 ~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 153 EDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 3 33677888999999887764 3 344444433333222 45789999999999999888887655
No 205
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.62 E-value=13 Score=37.58 Aligned_cols=88 Identities=10% Similarity=0.052 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH-----------
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT----------- 259 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~----------- 259 (425)
+.-.+-.-+.+...+.-|-++|..|-. ..+++......++|.+|+.+-+...+. .||+
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 555555666667788889999988743 356788899999999999988876553 3332
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
.-|.--=.+|.+.|+-.||..+++.+....
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 223344568889999999999998876443
No 206
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.62 E-value=3.3 Score=39.72 Aligned_cols=140 Identities=13% Similarity=0.109 Sum_probs=70.8
Q ss_pred hcCChhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHH
Q 042756 123 KQGQREEAETLILETLSKLGSRER--ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 200 (425)
+.+++.+|+++|.++-+.....+. .-...-+.+|+||.... .+.++.....+++..++. .|-.+..+..
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s--------~~l~LF~~L~ 88 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKS--------AYLPLFKALV 88 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCc--------hHHHHHHHHH
Confidence 456677777777666543221110 00112345666666443 222333333343332211 4444444432
Q ss_pred --hcCChhHHHHHHHHHHHc--CCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcCHH
Q 042756 201 --EMGQPHEAENLIEEMRVK--GLEP------------SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRVDTV 260 (425)
Q Consensus 201 --~~g~~~~a~~~~~~m~~~--g~~p------------~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~~~ 260 (425)
+.+.+++|.+.+..-.++ +-.| |..-=++.+..+...|++.+++.+++.|..+ ....+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 356666776666665544 2221 2222244556667777777777777766654 3336677
Q ss_pred hHHHHHHHHHh
Q 042756 261 CSNMVLSSYGD 271 (425)
Q Consensus 261 ~yn~li~~~~~ 271 (425)
+||-++-.+.+
T Consensus 169 ~yd~~vlmlsr 179 (549)
T PF07079_consen 169 MYDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHHhH
Confidence 77775555544
No 207
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.48 E-value=1.7 Score=39.32 Aligned_cols=78 Identities=9% Similarity=-0.027 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 042756 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD-----SGIPFSVRTYNS 299 (425)
Q Consensus 225 ~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t~~~ 299 (425)
.++..++..+...|+.+.+...++++.... +.+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|-..+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 466777777888888888888888887654 34778888888888888888888888887753 678887777666
Q ss_pred HHHH
Q 042756 300 VLNS 303 (425)
Q Consensus 300 ll~~ 303 (425)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6555
No 208
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=92.46 E-value=4.1 Score=36.85 Aligned_cols=100 Identities=9% Similarity=-0.062 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCC-CHHHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEP-SGFEYK 228 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-~~~ty~ 228 (425)
.|..-+..+.+.|+++++..+++.+.+..+... ..|+ .+--+-.+|...|++++|...|+.+...- -.| ....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~-~a~~--A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST-YQPN--ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc-chHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 344444444444554433334443333333221 1122 44445555555666666666666655421 000 122333
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 229 CIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 229 ~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
.+...+...|+.+.|.++|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3344455566666666666665554
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=92.32 E-value=1.1 Score=31.16 Aligned_cols=57 Identities=11% Similarity=-0.095 Sum_probs=44.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
..|.+.+++++|.++++++...+ +.+...+...-.++.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 46788889999999999988852 2245677777788889999999999999888653
No 210
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.09 E-value=2.4 Score=35.79 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCcCHHhHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG--FEYKCIIYGYGRLGLLEDMERIVNQMESD---GTRVDTVCSNM 264 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~ty~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~yn~ 264 (425)
..+..+...|++.|+.++|++.|.++.+....|.. ..+-.+|....-.+++..+.......... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 37888999999999999999999999987655543 36778888899999999988888766543 22222221112
Q ss_pred HHHHH--HhcCCHHHHHHHHHHHH
Q 042756 265 VLSSY--GDHNELSRMVLWLQKMK 286 (425)
Q Consensus 265 li~~~--~~~g~~~~A~~l~~~M~ 286 (425)
...|+ ...|++.+|-++|-+..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 22222 35788999999888765
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.84 E-value=1.9 Score=34.60 Aligned_cols=86 Identities=19% Similarity=0.125 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..|+.- ....+.|++++|.+.|+.+..+....+.. ...--.|+.+|.+.++++.+..+++.|.++-+.+..+ .
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya-~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-----d 84 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYA-EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-----D 84 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCccc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-----c
Confidence 344433 33445689999999999998865544433 2345678899999999888888888888887776554 6
Q ss_pred HHHHHHHHHhcCC
Q 042756 192 LKSMISGLCEMGQ 204 (425)
Q Consensus 192 ~~~li~~~~~~g~ 204 (425)
|--.+.+++.-..
T Consensus 85 Ya~Y~~gL~~~~~ 97 (142)
T PF13512_consen 85 YAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665443
No 212
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=91.80 E-value=5.1 Score=31.30 Aligned_cols=111 Identities=19% Similarity=0.156 Sum_probs=58.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
+-.++-..|+.++|+.+|++-...+.. .......+-.+-..+...|+ .+++...+.+.....+.-.-+....-.+-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~~~~~~a~i~lastlr~LG~---~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLS-GADRRRALIQLASTLRNLGR---YDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 345566778888888888887765433 22222234445556667777 45555555555433211000111122222
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 235 (425)
-++...|+.++|++.+-.... ++...|.--|..|+
T Consensus 83 l~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 355667777777777765543 23335555555544
No 213
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=91.70 E-value=1.9 Score=41.20 Aligned_cols=117 Identities=14% Similarity=0.069 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH-HHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS-NMVLS 267 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~y-n~li~ 267 (425)
.+|.+.|++-.+..-++.|..+|-+....| +.++++.++++|.-++ .||...|.++|+.=... .||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 389999999999999999999999999999 6789999999998776 57788899999854332 2454444 55667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFS--VRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd--~~t~~~ll~~~~~~~~~ 310 (425)
-+.+-++-+.|..+|+.-++. +.-+ ...|..+|+-=+..|++
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~l 518 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSL 518 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcch
Confidence 778889989999999965432 2222 45777777765665554
No 214
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=7.6 Score=39.66 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=35.0
Q ss_pred HHHhhHHHHHHHHHHhHHh-----cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhC
Q 042756 31 LTARLTKQGQRFLSSLALA-----VTRDSKAASRLISKFVASSPQFIALNALSHLLS 82 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~-----~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~ 82 (425)
...|+.+-|..+++.=... .-.+...+...+.....+|+++....++.++..
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 4456677777666543222 112456677888888889999999988888744
No 215
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=7.2 Score=34.79 Aligned_cols=235 Identities=11% Similarity=0.021 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC----------CC----chhhhHHHHHHH-hhhcCCCccCHHHHHHHH
Q 042756 54 SKAASRLISKFVASSPQFIALNALSHLLSPDTT----------HP----RLSSLAFPLYMR-ITEESWFQWNPKLVAEII 118 (425)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~----------~~----~~~~~a~~lf~~-m~~~~~~~~~~~~~~~ll 118 (425)
...|+.-+..+.+-...+.+..-+...-.-++. .| ..+.-+++++.- +...-+.+|+.-.--..+
T Consensus 69 lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L 148 (366)
T KOG2796|consen 69 LQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKL 148 (366)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 455666677777776666666665554222221 11 134555555443 444333445543221222
Q ss_pred HHHH-------hcCCh-hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 119 AFLD-------KQGQR-EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 119 ~~~~-------~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
..+. +.|.. +...+++++-.. .+-+.++..+.-.+.+. -....+.+..... ..-+..
T Consensus 149 ~~~V~~ii~~~e~~~~~ESsv~lW~KRl~----------~Vmy~~~~~llG~kEy~---iS~d~~~~vi~~~--~e~~p~ 213 (366)
T KOG2796|consen 149 KTVVSKILANLEQGLAEESSIRLWRKRLG----------RVMYSMANCLLGMKEYV---LSVDAYHSVIKYY--PEQEPQ 213 (366)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHH----------HHHHHHHHHHhcchhhh---hhHHHHHHHHHhC--CcccHH
Confidence 2222 22333 555566655322 12345666655555532 2333333433333 334445
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII-----YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll-----~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
.-..+.+.-.+.|+.+.|...|++..+..-+.|..+++.++ ..|.-.+++.+|...|.+.....- .|...-|.-
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnK 292 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNK 292 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC-CchhhhchH
Confidence 88999999999999999999999888775556666666554 346667789999999988876532 255666665
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
.-+..-.|+...|++....|... .|...+-++++--++.
T Consensus 293 ALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~nL~t 331 (366)
T KOG2796|consen 293 ALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLFNLTT 331 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHHHHHH
Confidence 55566679999999999999875 6777777766655554
No 216
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.19 E-value=9.2 Score=33.01 Aligned_cols=166 Identities=12% Similarity=0.030 Sum_probs=98.9
Q ss_pred hhhhHHHHHHHhhhcCC-CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC----
Q 042756 90 LSSLAFPLYMRITEESW-FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS---- 164 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~---- 164 (425)
.+++|.+.|+.+...-. ........-.+..++-+.|+++.|...|++..+.....+ .. -+...+.+.+....
T Consensus 20 ~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~-~~--~~A~Y~~g~~~~~~~~~~ 96 (203)
T PF13525_consen 20 DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP-KA--DYALYMLGLSYYKQIPGI 96 (203)
T ss_dssp -HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T-TH--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc-ch--hhHHHHHHHHHHHhCccc
Confidence 67777777777765421 122334455688899999999999999999887533322 11 23334444332111
Q ss_pred ------cccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042756 165 ------KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 165 ------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 238 (425)
.....+++ ..+..+|.-|-.....++|......+.+.- ..---.+.+-|.+.|
T Consensus 97 ~~~~~D~~~~~~A~-----------------~~~~~li~~yP~S~y~~~A~~~l~~l~~~l----a~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 97 LRSDRDQTSTRKAI-----------------EEFEELIKRYPNSEYAEEAKKRLAELRNRL----AEHELYIARFYYKRG 155 (203)
T ss_dssp H-TT---HHHHHHH-----------------HHHHHHHHH-TTSTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHCTT
T ss_pred hhcccChHHHHHHH-----------------HHHHHHHHHCcCchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcc
Confidence 11112222 266777777777777788877776665430 111123567799999
Q ss_pred CHHHHHHHHHHHHHC--CCCcCHHhHHHHHHHHHhcCCHHHHH
Q 042756 239 LLEDMERIVNQMESD--GTRVDTVCSNMVLSSYGDHNELSRMV 279 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~--g~~~~~~~yn~li~~~~~~g~~~~A~ 279 (425)
.+..|..-++.+.+. +........-.|+.+|-+.|..+.|.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999999876 22222355678888999999877543
No 217
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.17 E-value=6.7 Score=31.39 Aligned_cols=125 Identities=10% Similarity=0.169 Sum_probs=84.8
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~ 232 (425)
..+|..+.+.+. ...++..+......+. .+....|.+|..|++.+ .++.++.+.. .++.+....++.
T Consensus 11 ~~vv~~~~~~~~---~~~l~~yLe~~~~~~~---~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~ 77 (140)
T smart00299 11 SEVVELFEKRNL---LEELIPYLESALKLNS---ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHHhCCc---HHHHHHHHHHHHccCc---cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHH
Confidence 457777776666 5677777777766542 34459999999999874 3455555553 234566777888
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 233 GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH-NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~-g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
.|-+.+.++++.-++..+.. |.-.+..+... ++++.|.+++.+- -+...|..+++.+.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 99999999988888877644 33344444444 7888888887761 25567777776553
No 218
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=91.01 E-value=6.9 Score=41.38 Aligned_cols=180 Identities=8% Similarity=-0.038 Sum_probs=106.9
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~ 171 (425)
..++..|-+..+.+ .. -...|..|-..|...-+...|.+.|+..-+- ++.....+....+.|++..+++.+.
T Consensus 475 ~~al~ali~alrld-~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL----Datdaeaaaa~adtyae~~~we~a~-- 546 (1238)
T KOG1127|consen 475 ALALHALIRALRLD-VS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL----DATDAEAAAASADTYAEESTWEEAF-- 546 (1238)
T ss_pred HHHHHHHHHHHhcc-cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CchhhhhHHHHHHHhhccccHHHHH--
Confidence 34444444444433 21 2336777777777777777788888776542 3333445677888888888854433
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
........... ...-...|--.--.|.+.++.-+|..-|..-.+. -| |...|..+..+|...|++..|.++|...
T Consensus 547 -~I~l~~~qka~-a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 547 -EICLRAAQKAP-AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred -HHHHHHhhhch-HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--CchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 33222221110 0011112223333456677888888888776653 34 5568888899999999999999999877
Q ss_pred HHCCCCcCHHhHHHHHH--HHHhcCCHHHHHHHHHHHH
Q 042756 251 ESDGTRVDTVCSNMVLS--SYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 251 ~~~g~~~~~~~yn~li~--~~~~~g~~~~A~~l~~~M~ 286 (425)
... .|+ .+|...-. .-|..|++.+|+..+....
T Consensus 623 s~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 623 SLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred Hhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 654 233 33333322 2356777888877777654
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.00 E-value=15 Score=34.99 Aligned_cols=180 Identities=9% Similarity=-0.034 Sum_probs=108.5
Q ss_pred HhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh---cCCcccHHHHHHHHH
Q 042756 100 RITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK---HDSKRGFDDTYARLN 176 (425)
Q Consensus 100 ~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~---~g~~~~~~~~~~~~~ 176 (425)
++......+++. .-.++-+|-...+++...++++.+..-..........+--...-|+.+ .|+ -++|.+.+.
T Consensus 132 rLd~~~~ls~di--v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd---re~Al~il~ 206 (374)
T PF13281_consen 132 RLDDPELLSPDI--VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD---REKALQILL 206 (374)
T ss_pred hhCCHhhcChhH--HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC---HHHHHHHHH
Confidence 343334444443 334666788999999999999999864221111111122234455666 666 677888877
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----HHHH
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCE---------MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL----LEDM 243 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~----~~~a 243 (425)
..........|| +|..+-..|-. ...+++|.+.|.+--+. .||.++=-.+...+...|. -.+.
T Consensus 207 ~~l~~~~~~~~d--~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 207 PVLESDENPDPD--TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEEL 282 (374)
T ss_pred HHHhccCCCChH--HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHH
Confidence 755555444444 77777766643 23577888888876553 4665543333333333332 2233
Q ss_pred HHHH----HHHHHCCC---CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 244 ERIV----NQMESDGT---RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 244 ~~~~----~~m~~~g~---~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
.++- ...-+.|. ..|=.-+.++..++.-.|+.++|.+.+++|.+.
T Consensus 283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3433 22223343 235566778899999999999999999999976
No 220
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=89.91 E-value=5.7 Score=32.06 Aligned_cols=50 Identities=14% Similarity=0.214 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Q 042756 190 QALKSMISGLCEMGQ-PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL 239 (425)
Q Consensus 190 ~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~ 239 (425)
.+|++++++.++... ---+..+|+-|++.+.+++..-|..+|+++.+-..
T Consensus 80 ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 80 SSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRGYF 130 (145)
T ss_pred chHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC
Confidence 378888888876665 45667788888887778888888888887766543
No 221
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.88 E-value=4.9 Score=33.88 Aligned_cols=102 Identities=12% Similarity=0.044 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc--cCh
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY--VKR 189 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--p~~ 189 (425)
..+..+...|++.|+.+.|.+.|.++.+....+... ...+-.+|....-.+++..+.............+.... .-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-IDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 457778999999999999999999988754443332 34566788888888998888888888887776643210 001
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMR 216 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (425)
.+|..+- +...|++.+|-+.|-+..
T Consensus 116 k~~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHH--HHHhchHHHHHHHHHccC
Confidence 1222221 122466777777666553
No 222
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.66 E-value=4.3 Score=36.81 Aligned_cols=78 Identities=14% Similarity=0.085 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCcCHHhHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-----DGTRVDTVCSNMV 265 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~yn~l 265 (425)
++..++..+...|+++.+.+.++++...- +-|...|..+|.+|.+.|+...|...++.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 88888999999999999999999998752 33778999999999999999999999887765 5999998888887
Q ss_pred HHHH
Q 042756 266 LSSY 269 (425)
Q Consensus 266 i~~~ 269 (425)
....
T Consensus 234 ~~~~ 237 (280)
T COG3629 234 EEIL 237 (280)
T ss_pred HHHh
Confidence 7773
No 223
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.55 E-value=4.8 Score=36.01 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCC-HHHHHH
Q 042756 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPS-GFEYKC 229 (425)
Q Consensus 152 y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-~~ty~~ 229 (425)
|+.-+..| +.|++..+.++|..+.+..+.+. ..|+ .+-=|-.++...|++++|..+|..+.+. +-.|- ..++-.
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~-~~~n--A~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNST-YTPN--AYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCc-ccch--hHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 44444433 34445555555555555544432 3344 4444566666666666666666666543 11221 134444
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+-....+.|+.++|..+|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 445555666666666666666554
No 224
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.42 E-value=5.2 Score=32.18 Aligned_cols=76 Identities=13% Similarity=0.045 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 199 LCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
..+.|++++|.+.|+.+..+= -+-....--.++.+|.+.|++++|...+++.++..-.-.-+-|-..+.|++.-..
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 345788888888888887751 1113345666788888888888888888888876433334567777777664443
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.29 E-value=16 Score=32.74 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH---
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS--- 267 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~--- 267 (425)
+.++++.++.-.|++.-.+.++++..+..-+-+..-...+...-...||++.|..+|++.++..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 78899999999999999999999999977666788888899999999999999999998887554566666776664
Q ss_pred --HHHhcCCHHHHHHHHHHHHhC
Q 042756 268 --SYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 268 --~~~~~g~~~~A~~l~~~M~~~ 288 (425)
.|.-..++.+|...|++....
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRM 281 (366)
T ss_pred hhheecccchHHHHHHHhhcccc
Confidence 445567888888899887654
No 226
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.85 E-value=3.4 Score=37.64 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=60.5
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC-CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS-VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
..+++.-....+ .+++...+.+.....+. ..|+. +-.+++.-+. .-+.++++.+...=.+-|+-||.++++.+|
T Consensus 68 d~~V~v~~~~~~---idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 68 DRLVDVISSREE---IDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLM 142 (418)
T ss_pred hhhhhccccccc---hhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHH
Confidence 344444333333 55555555555433221 11221 2222333333 345778888888888889999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHC
Q 042756 232 YGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+.+.+.+++.+|.++.-.|...
T Consensus 143 D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999888887776654
No 227
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.55 E-value=7.5 Score=38.08 Aligned_cols=133 Identities=16% Similarity=0.181 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
..-.+.++..+-+.|..+.|+++-..-. .-.....+.|+ ++.|++...+. .+..
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~---L~~A~~~a~~~--------~~~~ 348 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGN---LDIALEIAKEL--------DDPE 348 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT----HHHHHHHCCCC--------STHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCC---HHHHHHHHHhc--------CcHH
Confidence 3446778888888888888887654421 23344556787 55555554332 2445
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.|..|-+...+.|+++-|.+.|.+.. -|..++-.|.-.|+.+...++-+....+|- +|....++.
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~ 413 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAAL 413 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHH
Confidence 89999999999999999999998753 467788888888988888888877777652 777777777
Q ss_pred hcCCHHHHHHHHHH
Q 042756 271 DHNELSRMVLWLQK 284 (425)
Q Consensus 271 ~~g~~~~A~~l~~~ 284 (425)
-.|++++..+++.+
T Consensus 414 ~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 414 LLGDVEECVDLLIE 427 (443)
T ss_dssp HHT-HHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 78888888877765
No 228
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.96 E-value=1.3 Score=26.11 Aligned_cols=26 Identities=8% Similarity=0.187 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
+|+.|-..|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47778888888888888888888843
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=87.89 E-value=16 Score=35.28 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=98.7
Q ss_pred HhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHcC
Q 042756 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG--YGRL 237 (425)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~--~~~~ 237 (425)
-+.++...+++++..+.+...+++...-..+.-+-+|+||... +++.......+..+. .| ...|-.+..+ +-+.
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHh
Confidence 4567777777888777776655543322345667888888854 466666666666553 22 3445555554 4578
Q ss_pred CCHHHHHHHHHHHHHC--CCCc------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHHHH
Q 042756 238 GLLEDMERIVNQMESD--GTRV------------DTVCSNMVLSSYGDHNELSRMVLWLQKMKD----SGIPFSVRTYNS 299 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~--g~~~------------~~~~yn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~t~~~ 299 (425)
+++..|.+.+..-.++ +-.| |-.-=+..++++...|++.++..++++|.. +.+..+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 8899998888877654 3322 445557778889999999999999998864 445689999999
Q ss_pred HHHHHHHHH
Q 042756 300 VLNSCSTIM 308 (425)
Q Consensus 300 ll~~~~~~~ 308 (425)
++-.+++.-
T Consensus 173 ~vlmlsrSY 181 (549)
T PF07079_consen 173 AVLMLSRSY 181 (549)
T ss_pred HHHHHhHHH
Confidence 776666643
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.59 E-value=20 Score=31.91 Aligned_cols=84 Identities=15% Similarity=0.033 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
...|+--+ .-.+.|++++|.+.|+.+..+....+-. ..+--.++-++-+.++.+.+...++.|.+.-+..+.+
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----- 107 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----- 107 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-----
Confidence 33454333 3445688888888888887653332222 3333456667778888777777777777766555443
Q ss_pred HHHHHHHHHHh
Q 042756 191 ALKSMISGLCE 201 (425)
Q Consensus 191 ~~~~li~~~~~ 201 (425)
-|-.-|.+++.
T Consensus 108 dY~~YlkgLs~ 118 (254)
T COG4105 108 DYAYYLKGLSY 118 (254)
T ss_pred hHHHHHHHHHH
Confidence 56666666654
No 231
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.21 E-value=1.4 Score=25.96 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m 215 (425)
|+.|-..|.+.|++++|+++|++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555666666666666666553
No 232
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=86.96 E-value=16 Score=33.19 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
|...|-.|-..|...|+.+.|..-|.+-.+..+. .++ .+..+-.++....+...-.++-..+.+.....+ -|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~---~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---~~i 227 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPE---ILLGLAEALYYQAGQQMTAKARALLRQALALDP---ANI 227 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHH---HHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC---ccH
Confidence 5555666666677777777776666665543222 222 233333333222222212333334444332221 123
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
.+..-+-..+...|++.+|...|+.|.+.
T Consensus 228 ral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 228 RALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 34444555556666666666666666654
No 233
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.62 E-value=0.33 Score=39.29 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
.+|+.+.+.+.++....+++.+...+..-+....+.++..|++.++.+...++++. . +..-...++..|-+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~--~-----~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT--S-----NNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS--S-----SSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc--c-----cccCHHHHHHHHHhcc
Confidence 45666777777777777888777766556677778888888888777777777661 1 1122345566666666
Q ss_pred CHHHHHHHHHHH
Q 042756 274 ELSRMVLWLQKM 285 (425)
Q Consensus 274 ~~~~A~~l~~~M 285 (425)
.+++|.-+|.++
T Consensus 85 l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 85 LYEEAVYLYSKL 96 (143)
T ss_dssp SHHHHHHHHHCC
T ss_pred hHHHHHHHHHHc
Confidence 666666666654
No 234
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=35 Score=33.61 Aligned_cols=165 Identities=10% Similarity=-0.024 Sum_probs=89.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh----
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR---- 189 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~---- 189 (425)
+..+.++.-+..+++.|.+-++...... ....-++..-.+|...|... ++...-.+....+.....|.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~-----~~it~~~n~aA~~~e~~~~~---~c~~~c~~a~E~gre~rad~klIa 298 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA-----TDITYLNNIAAVYLERGKYA---ECIELCEKAVEVGRELRADYKLIA 298 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh-----hhhHHHHHHHHHHHhccHHH---HhhcchHHHHHHhHHHHHHHHHHH
Confidence 4457777777888888888888776542 11222344555577766632 22222222221111110000
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH-------------------------HHHHHcCCCHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI-------------------------IYGYGRLGLLEDME 244 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l-------------------------l~~~~~~g~~~~a~ 244 (425)
..+.-+-++|.+.++++.+...|.+....-..||..+=... -+.+.+.|++..|.
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av 378 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAV 378 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHH
Confidence 12222334666678889999999887665444443322111 12255666666666
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+.+.+++++. +-|...|..--.+|.+.|.+.+|++--+.-++
T Consensus 379 ~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie 420 (539)
T KOG0548|consen 379 KHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIE 420 (539)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 6666666654 23566666666666666666666655444433
No 235
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=86.35 E-value=31 Score=32.84 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=77.5
Q ss_pred HHHHHHh---cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----c--CCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 117 IIAFLDK---QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----H--DSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 117 ll~~~~~---~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~--g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
..-++-+ .|+.++|++++..+......+.++ +|..+-..|-. . .+.+..+++.+.+.+--...+...|
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d---~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~ 261 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPDPD---TLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYS 261 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCChH---HHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccc
Confidence 3445556 799999999999966655555655 56665555432 2 2333456666666655433322222
Q ss_pred ChhHHHHHHHHHHhcC-ChhHHHHHH---HH-HHHcC---CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 188 KRQALKSMISGLCEMG-QPHEAENLI---EE-MRVKG---LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g-~~~~a~~~~---~~-m~~~g---~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
.+ -+-+|+....... .-.+..++- .. ..++| -..|-..+.+++.++.-.|+.++|.+..+.|...
T Consensus 262 GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 262 GI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred hH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 11 2222333222211 111222222 22 22334 3357778999999999999999999999999976
No 236
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.20 E-value=16 Score=29.49 Aligned_cols=79 Identities=13% Similarity=0.277 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHC------CCCcCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHH
Q 042756 227 YKCIIYGYGRLGLLEDMERIVNQMESD------GTRVDTVCSNMVLSSYGDHNE-LSRMVLWLQKMKDSGIPFSVRTYNS 299 (425)
Q Consensus 227 y~~ll~~~~~~g~~~~a~~~~~~m~~~------g~~~~~~~yn~li~~~~~~g~-~~~A~~l~~~M~~~g~~pd~~t~~~ 299 (425)
.|+++.-.+..+++.....+++.+.-. | ..+-..|++++.+.++..- ---+..+|+-|++.+.+++..-|..
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~-~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIG-WLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhh-hcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 345555555555555555554444211 1 1244566777777655554 3345566666666666677777777
Q ss_pred HHHHHHH
Q 042756 300 VLNSCST 306 (425)
Q Consensus 300 ll~~~~~ 306 (425)
||+++.+
T Consensus 121 li~~~l~ 127 (145)
T PF13762_consen 121 LIKAALR 127 (145)
T ss_pred HHHHHHc
Confidence 7766654
No 237
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=86.15 E-value=15 Score=29.13 Aligned_cols=119 Identities=10% Similarity=0.087 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCCHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY---KCIIYGYGRLGLLEDME 244 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty---~~ll~~~~~~g~~~~a~ 244 (425)
+++..+++.+...+.+. .-||=+|.-....-+.+-..++++.. |--.|.... ..++.+|++.|.
T Consensus 18 V~qGveii~k~v~Ssni-----~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDis~C~NlKrVi~C~~~~n~----- 84 (161)
T PF09205_consen 18 VKQGVEIIEKTVNSSNI-----KEYNWVICNIIDAADCDYVVETLDSI---GKIFDISKCGNLKRVIECYAKRNK----- 84 (161)
T ss_dssp HHHHHHHHHHHHHHS-H-----HHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-GGG-S-THHHHHHHHHTT------
T ss_pred HHHHHHHHHHHcCcCCc-----cccceeeeecchhhchhHHHHHHHHH---hhhcCchhhcchHHHHHHHHHhcc-----
Confidence 45556666666544432 24555555444444445555555544 323333222 223333333332
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+..-.+.-++.+...|+-+.-.+++.+..+. -.|+......+-++|.+.|+..++
T Consensus 85 -------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~ 139 (161)
T PF09205_consen 85 -------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREA 139 (161)
T ss_dssp ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHH
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhH
Confidence 4455677888899999999999999998764 378888999999999998876654
No 238
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.39 E-value=29 Score=31.63 Aligned_cols=230 Identities=10% Similarity=0.077 Sum_probs=125.3
Q ss_pred HHHhhHHHHHHHHHHhHHhc-CCCHHH--------HHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHh
Q 042756 31 LTARLTKQGQRFLSSLALAV-TRDSKA--------ASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI 101 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~-~~d~~~--------~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m 101 (425)
...|+.+.|.-++....... ..++.. ||.=...+.+..+.+.|...+.+ |.++++.-
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~--------------a~~~l~~~ 69 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQR--------------AYDILEKP 69 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH--------------HHHHHHhh
Confidence 45678888888888877662 333333 33333333333244444444433 44444331
Q ss_pred hhcCCCccCH-----HHHHHHHHHHHhcCChh---HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHH
Q 042756 102 TEESWFQWNP-----KLVAEIIAFLDKQGQRE---EAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173 (425)
Q Consensus 102 ~~~~~~~~~~-----~~~~~ll~~~~~~g~~~---~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~ 173 (425)
.+.+...++. .+...++.+|...+..+ +|.++++.+....+. .+. +|-.-+..+.+.++ .+++.+
T Consensus 70 ~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~---~~~L~l~il~~~~~---~~~~~~ 142 (278)
T PF08631_consen 70 GKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPE---VFLLKLEILLKSFD---EEEYEE 142 (278)
T ss_pred hhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcH---HHHHHHHHHhccCC---hhHHHH
Confidence 1112233333 46677888887777644 566777777555443 222 45556677777666 566777
Q ss_pred HHHHHhhcCCCCccChhHHHHHHHHHHhc--CChhHHHHHHHHHHHcCCCCCHH-HH-HHHHH---HHHcC------CCH
Q 042756 174 RLNQLVNSSSSVYVKRQALKSMISGLCEM--GQPHEAENLIEEMRVKGLEPSGF-EY-KCIIY---GYGRL------GLL 240 (425)
Q Consensus 174 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~p~~~-ty-~~ll~---~~~~~------g~~ 240 (425)
.+.+|..+..... ..+..++..+... ...+.|...+..+....+.|... -. ..++. ..... +.+
T Consensus 143 ~L~~mi~~~~~~e---~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i 219 (278)
T PF08631_consen 143 ILMRMIRSVDHSE---SNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKI 219 (278)
T ss_pred HHHHHHHhccccc---chHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHH
Confidence 7777766543222 3677777766332 34567778887777766666553 11 11111 12221 126
Q ss_pred HHHHHHHHHHHHC-CCCcCHHhHHHHH-------HHHHhcCCHHHHHHHHHH
Q 042756 241 EDMERIVNQMESD-GTRVDTVCSNMVL-------SSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 241 ~~a~~~~~~m~~~-g~~~~~~~yn~li-------~~~~~~g~~~~A~~l~~~ 284 (425)
+...++++..... +-+.+..+-.++. ..+.+.+++++|.++|+-
T Consensus 220 ~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 220 ESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 6666677754432 3333433333332 334567889999999874
No 239
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.08 E-value=45 Score=33.85 Aligned_cols=62 Identities=16% Similarity=0.227 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-H----------HHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF-E----------YKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t----------y~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
...++......+++++|+.+-++.-+ ..||.+ - |.-.=++|.|+|+-.+|.++++++....+
T Consensus 776 ~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav 848 (1081)
T KOG1538|consen 776 LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV 848 (1081)
T ss_pred HHHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence 35677788889999999998887655 345443 2 33445789999999999999999877543
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=84.75 E-value=11 Score=31.13 Aligned_cols=87 Identities=6% Similarity=-0.132 Sum_probs=60.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
+-..|++++|..+|.-+...+.. |..-+..|-.+|-..+++++|...|...-..+. -|...+--.-.+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44578888888888888774321 233345555566667888888888887665443 2455555667788888888899
Q ss_pred HHHHHHHHh
Q 042756 279 VLWLQKMKD 287 (425)
Q Consensus 279 ~~l~~~M~~ 287 (425)
...|...++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 888888776
No 241
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.68 E-value=3.3 Score=25.51 Aligned_cols=28 Identities=7% Similarity=-0.024 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
+|..+-..|.+.|++++|.++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566667777777777777777777654
No 242
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=5.6 Score=39.58 Aligned_cols=150 Identities=10% Similarity=0.004 Sum_probs=76.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCC--CCCCchhhhHHHHHHHhhhcCC
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPD--TTHPRLSSLAFPLYMRITEESW 106 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~--~~~~~~~~~a~~lf~~m~~~~~ 106 (425)
+.+++|+++.|..++..+. ...-+.+.+-+.+.|-.+.|+++--.--.+- ...-++++.|.++-.+..
T Consensus 595 t~vmrrd~~~a~~vLp~I~------k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~---- 664 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP------KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEAN---- 664 (794)
T ss_pred HHhhhccccccccccccCc------hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhc----
Confidence 4566778888887766653 3344566666777766555554321100000 000013444444433321
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
+..-|..|-.+..+.|++..|.+.|.... -|..|+-.+...|+.+++..+...-.+. +
T Consensus 665 ---s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------------d~~~LlLl~t~~g~~~~l~~la~~~~~~---g---- 722 (794)
T KOG0276|consen 665 ---SEVKWRQLGDAALSAGELPLASECFLRAR------------DLGSLLLLYTSSGNAEGLAVLASLAKKQ---G---- 722 (794)
T ss_pred ---chHHHHHHHHHHhhcccchhHHHHHHhhc------------chhhhhhhhhhcCChhHHHHHHHHHHhh---c----
Confidence 22233346666677777777766666532 1455666666666643333332222221 1
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEE 214 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (425)
..|.-.-+|...|+++++.+++.+
T Consensus 723 ----~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 ----KNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----ccchHHHHHHHcCCHHHHHHHHHh
Confidence 335555566666777776666554
No 243
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.44 E-value=24 Score=36.74 Aligned_cols=114 Identities=11% Similarity=0.114 Sum_probs=55.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
+|.-|.....+..--.+++.+.+.+...... + ..|+++|.+.++.++..+..+.. ..+... - -....+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gla~~dh---t-tlLLncYiKlkd~~kL~efI~~~----~~g~~~-f---d~e~al 470 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGLANSDH---T-TLLLNCYIKLKDVEKLTEFISKC----DKGEWF-F---DVETAL 470 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHcccccchh---H-HHHHHHHHHhcchHHHHHHHhcC----CCccee-e---eHHHHH
Confidence 5666655555555555666665555443322 1 46777777777744333332221 111111 0 234555
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
..+.+.+-.++|..+-..... +......++ -..|++++|.+++..+
T Consensus 471 ~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 471 EILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 555556666665555544332 122333332 2345555555555544
No 244
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=84.30 E-value=59 Score=34.29 Aligned_cols=197 Identities=11% Similarity=0.060 Sum_probs=106.9
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCcc
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~ 109 (425)
.+..|..++|..+++........|..|...+-..|-..+ ..++|..+|++..... |
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~---------------------~~d~~~~~Ye~~~~~~---P 108 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG---------------------KLDEAVHLYERANQKY---P 108 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh---------------------hhhHHHHHHHHHHhhC---C
Confidence 344455666666666655443336666666666666666 4555555665555443 6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC-cccH-----HHHHHH-HHHHhhcC
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS-KRGF-----DDTYAR-LNQLVNSS 182 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~-~~~~-----~~~~~~-~~~~~~~~ 182 (425)
+......+..+|.|.+++.+-.+.=-++-+. .|... ...| +++..+..... .+.+ ....+. ..++.+.+
T Consensus 109 ~eell~~lFmayvR~~~yk~qQkaa~~LyK~--~pk~~-yyfW-sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~ 184 (932)
T KOG2053|consen 109 SEELLYHLFMAYVREKSYKKQQKAALQLYKN--FPKRA-YYFW-SVISLILQSIFSENELLDPILLALAEKMVQKLLEKK 184 (932)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCccc-chHH-HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccC
Confidence 6777777888888888776533333333222 12222 1223 34444433211 1111 112222 22222222
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMR-VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
+..-+..-...-...+-..|..++|++++..=. +.-...+...-+--++.+.+.+++.+..++-.++...|-
T Consensus 185 -gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 185 -GKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred -CccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 111122222233334455788999999994433 333334555666778888888999888888888887763
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.18 E-value=23 Score=32.89 Aligned_cols=156 Identities=9% Similarity=-0.070 Sum_probs=85.9
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~ 114 (425)
...+|-..++.++...+.|..+++..=+++.-.|+.+...+.+.+++.+= ..+ ++..+.+-
T Consensus 118 ~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w------------------n~d-lp~~sYv~ 178 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW------------------NAD-LPCYSYVH 178 (491)
T ss_pred cccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc------------------CCC-CcHHHHHH
Confidence 34445556666666666677777777777777776666666666554321 112 32233333
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC-CCccChhHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVKRQALK 193 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~ 193 (425)
+..--++...|-+++|++.-++-.+-. ..+ .-.-.++-+.+--.|+ ..+..+.+.+....-. ..-.-...|=
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN---~~D-~Wa~Ha~aHVlem~~r---~Keg~eFM~~ted~Wr~s~mlasHNyW 251 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQIN---RFD-CWASHAKAHVLEMNGR---HKEGKEFMYKTEDDWRQSWMLASHNYW 251 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCC---Ccc-hHHHHHHHHHHHhcch---hhhHHHHHHhcccchhhhhHHHhhhhH
Confidence 334444557899999998877766532 222 1122455555666677 4455555544321110 0000112333
Q ss_pred HHHHHHHhcCChhHHHHHHHHHH
Q 042756 194 SMISGLCEMGQPHEAENLIEEMR 216 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~ 216 (425)
..--.+...++++.|+++|++=.
T Consensus 252 H~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 252 HTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHhhhcccchhHHHHHHHHHH
Confidence 33445566789999999998654
No 246
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.93 E-value=30 Score=30.66 Aligned_cols=156 Identities=12% Similarity=0.022 Sum_probs=86.1
Q ss_pred CChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCC
Q 042756 125 GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ 204 (425)
Q Consensus 125 g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 204 (425)
...+.|--+.++|.+- +..+..|+.-...|..+|.++.+..+++..-++.++ + +
T Consensus 72 KayEqaamLake~~kl-----sEvvdl~eKAs~lY~E~GspdtAAmaleKAak~len---v------------------~ 125 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKL-----SEVVDLYEKASELYVECGSPDTAAMALEKAAKALEN---V------------------K 125 (308)
T ss_pred HHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhc---C------------------C
Confidence 3455565666666542 222445777788888888887777777776666544 2 2
Q ss_pred hhHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC----CcC-HHhHHHHHHHHHhcCC
Q 042756 205 PHEAENLIEEMRVKGLE-----PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT----RVD-TVCSNMVLSSYGDHNE 274 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~-----p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~----~~~-~~~yn~li~~~~~~g~ 274 (425)
+++|+++|.+-..--.. --..-|...-..+++...+++|-..|..-..... -++ -..|-+.|-.|.-..+
T Consensus 126 Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D 205 (308)
T KOG1585|consen 126 PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD 205 (308)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH
Confidence 35555555554321000 0112334444566677777776655543322110 111 1335555556666778
Q ss_pred HHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHH
Q 042756 275 LSRMVLWLQKMKDS---GIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 275 ~~~A~~l~~~M~~~---g~~pd~~t~~~ll~~~~~ 306 (425)
+..|.++|++--+. .-.-|..+...||.+|-.
T Consensus 206 yv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~ 240 (308)
T KOG1585|consen 206 YVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE 240 (308)
T ss_pred HHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc
Confidence 88888888874321 112356777777777744
No 247
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.57 E-value=33 Score=30.80 Aligned_cols=96 Identities=17% Similarity=0.077 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCc-CHHhHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKG----LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRV-DTVCSN 263 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~yn 263 (425)
..|+.-+..|. .|++.+|...|....+.. ..||. +=-|-.++...|++++|..+|..+.+.- =.| -....-
T Consensus 143 ~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 36888887665 666999999999999863 33433 3447889999999999999999998752 111 246777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
-|-.+..+.|+.++|...|.+..+.
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 7888889999999999999999875
No 248
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=83.25 E-value=34 Score=31.15 Aligned_cols=136 Identities=5% Similarity=-0.039 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh-cC-ChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE-MG-QPHEAENLIEEMRV-KGLEPSGFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~g~~~~a~ 244 (425)
+.++++.+...-.+ ..+.-|..+-..+++.... .+ ...--.++.+-+.. .|-.++..+..++|+.+++.+++..-.
T Consensus 144 Vv~aL~L~~~~~~~-~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPD-ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcc-cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 55666666643332 2244566666666666665 22 22233333333333 356788899999999999999999999
Q ss_pred HHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHHHHHH
Q 042756 245 RIVNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 245 ~~~~~m~~~-g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M-----~~~g~~pd~~t~~~ll~~~ 304 (425)
++++..... +..-|...|..+|..-...|+..-+.++.++= ++.|+.-+...-..+-+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999988765 66678999999999999999998888877763 3567776666655554444
No 249
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.05 E-value=11 Score=34.63 Aligned_cols=95 Identities=6% Similarity=0.008 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKG---LEPS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
+-...+..-....+++.+...+-.++... ..|+ .+++.-++. .-+.++++-+...=+.-|+.||-++++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 44555555555678888888888877542 2233 334333332 33567888888888899999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
|+.+.+.+++.+|.++.-.|..+.
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999888876543
No 250
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.99 E-value=3.9 Score=25.18 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSK 140 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 140 (425)
++..+-..|.+.|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4666888999999999999999999875
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.96 E-value=27 Score=29.27 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=75.4
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--HHhcCCccc
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS--FCKHDSKRG 167 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~--~~~~g~~~~ 167 (425)
..++|+.-|.++.+.+.-..-.-.---+-...+..|+...|+..|+++-.....|...- -..-|=.+ +...|.
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r--d~ARlraa~lLvD~gs--- 147 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR--DLARLRAAYLLVDNGS--- 147 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh--HHHHHHHHHHHhcccc---
Confidence 46789999999888764332222222234455678999999999999876433333210 01122222 345666
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP 222 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 222 (425)
.+++...++.+...++.. -...-.+|--+-.+.|++.+|.+.|.++..--..|
T Consensus 148 y~dV~srvepLa~d~n~m--R~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPM--RHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhhhccCCCChh--HHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 455555665554444322 12244566667778899999999999887644444
No 252
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.87 E-value=3.2 Score=24.78 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=22.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 259 TVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 259 ~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
..+++.|-..|...|++++|..++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4578888888888999999999888865
No 253
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=82.61 E-value=69 Score=33.83 Aligned_cols=97 Identities=19% Similarity=0.123 Sum_probs=62.8
Q ss_pred HHhcCChhHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 121 LDKQGQREEAETLILETLSKLGS----RERELVLFYCNLIDSFC-KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 121 ~~~~g~~~~A~~l~~~m~~~~~~----~~~~~~~~y~~li~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
.....++++|..++.+....-.. ........|+.|-.-.. ..|+++.+.+..+...++.+... ..+....+.++
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~-~~~r~~~~sv~ 503 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA-YRSRIVALSVL 503 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc-chhhhhhhhhh
Confidence 34567899999999887664332 12222234444433322 34665666666666666555443 44677788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..+..-.|++++|..+..+..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHH
Confidence 89999999999998888777654
No 254
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.53 E-value=28 Score=31.69 Aligned_cols=122 Identities=8% Similarity=0.056 Sum_probs=75.9
Q ss_pred HHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 042756 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR 236 (425)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~ 236 (425)
......|+...+...+....+..+++.. .--.+..+|...|+.+.|..++..+-..--.........-|..+.+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3455666655555555555555444422 5667788888888888888888877544222222333334555556
Q ss_pred CCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 237 LGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 237 ~g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.....+...+-...-.. | |...--.+-..|...|+.++|.+.+-.+.+
T Consensus 216 aa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 216 AAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66655555555555553 4 566666677788888888888887776654
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=81.78 E-value=26 Score=33.32 Aligned_cols=93 Identities=8% Similarity=-0.110 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
+++.+.-+|.+.+++.+|++.-++.+... ++|....=-=-.+|...|+++.|+..|+.+.+. .|+-..-+.=|..|.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 67777777778888888877777776642 233443333345677777888888888877765 354444444343333
Q ss_pred -hcCCH-HHHHHHHHHHH
Q 042756 271 -DHNEL-SRMVLWLQKMK 286 (425)
Q Consensus 271 -~~g~~-~~A~~l~~~M~ 286 (425)
+..+. +...++|..|-
T Consensus 336 ~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 33333 33466777774
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.38 E-value=16 Score=38.03 Aligned_cols=140 Identities=14% Similarity=0.216 Sum_probs=88.3
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHH
Q 042756 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200 (425)
Q Consensus 121 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 200 (425)
+-+.|++++|..-|-+-.. ..+++ .+|.-|-...+ ..+....+..+...+- .+...-..||.+|.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~---~le~s------~Vi~kfLdaq~---IknLt~YLe~L~~~gl---a~~dhttlLLncYi 442 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIG---FLEPS------EVIKKFLDAQR---IKNLTSYLEALHKKGL---ANSDHTTLLLNCYI 442 (933)
T ss_pred HHhcCCHHHHHHHHHHHcc---cCChH------HHHHHhcCHHH---HHHHHHHHHHHHHccc---ccchhHHHHHHHHH
Confidence 4467899998876655432 23332 35555544444 5566666666655542 23447788999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHH
Q 042756 201 EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVL 280 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~ 280 (425)
+.++.++..++.+... .|.. .+-....+..|-+.+-.++|..+-..... +...-+.++ -..|++++|++
T Consensus 443 Klkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~ 511 (933)
T KOG2114|consen 443 KLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALR 511 (933)
T ss_pred HhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHH
Confidence 9999999888877655 4433 12355667777777777777766554433 333334443 45578889988
Q ss_pred HHHHHH
Q 042756 281 WLQKMK 286 (425)
Q Consensus 281 l~~~M~ 286 (425)
.+..|.
T Consensus 512 yi~slp 517 (933)
T KOG2114|consen 512 YISSLP 517 (933)
T ss_pred HHhcCC
Confidence 877763
No 257
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.30 E-value=11 Score=27.95 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=14.4
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 219 g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.+.|+.....+.++||-+.+|+..|.++|+..+
T Consensus 37 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 37 DLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=81.28 E-value=60 Score=32.20 Aligned_cols=191 Identities=13% Similarity=0.046 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHH
Q 042756 34 RLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKL 113 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~ 113 (425)
+.+.-+.-+|..+.+.++|.. ..++....=.|+=+..+..+.+.....+........++- .
T Consensus 171 sgv~~G~G~f~L~lSlLPp~~---~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL----------------~ 231 (468)
T PF10300_consen 171 SGVYFGFGLFNLVLSLLPPKV---LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLL----------------W 231 (468)
T ss_pred HhHHHHHHHHHHHHHhCCHHH---HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHH----------------H
Confidence 334444555666655554433 345555555566556666665544332222222222222 3
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCchhHHHHHHH-HHHHHHhcCCcccHHHHHHHHHHHhhcCCC-Ccc
Q 042756 114 VAEIIAFLDK----QGQREEAETLILETLSKLGSRERELVLFYCN-LIDSFCKHDSKRGFDDTYARLNQLVNSSSS-VYV 187 (425)
Q Consensus 114 ~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~-li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p 187 (425)
|..++..++. ..+.+.|.++++.+.++.. .. . .|.- --+.+...|+ ++++.+.+.+....... ...
T Consensus 232 y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP--~s--~-lfl~~~gR~~~~~g~---~~~Ai~~~~~a~~~q~~~~Ql 303 (468)
T PF10300_consen 232 YHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYP--NS--A-LFLFFEGRLERLKGN---LEEAIESFERAIESQSEWKQL 303 (468)
T ss_pred HHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCC--Cc--H-HHHHHHHHHHHHhcC---HHHHHHHHHHhccchhhHHhH
Confidence 4444444433 4568899999999987622 21 2 2211 1223445677 66666666654432111 112
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHcCCCH-------HHHHHHHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY-GYGRLGLL-------EDMERIVNQMES 252 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~-~~~~~g~~-------~~a~~~~~~m~~ 252 (425)
....+--+.-++.-..++++|.+.|.++.+.+-. +..+|.-+.- ++...|+. ++|.++|.+...
T Consensus 304 ~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 304 HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2335555666678889999999999999986422 3344443332 23445655 777788776654
No 259
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.16 E-value=4.3 Score=24.20 Aligned_cols=29 Identities=28% Similarity=0.328 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLS 139 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 139 (425)
..+++.|-..|...|++++|.+++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45788899999999999999999998765
No 260
>PRK15331 chaperone protein SicA; Provisional
Probab=80.95 E-value=14 Score=30.60 Aligned_cols=89 Identities=16% Similarity=-0.009 Sum_probs=60.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHH
Q 042756 119 AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG 198 (425)
Q Consensus 119 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 198 (425)
.-+-..|++++|..+|.-+..-... .+. -|..|-.++-..+.++.+.+++.....+...++. .+--.-.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~---Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~------p~f~agqC 114 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPD---YTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR------PVFFTGQC 114 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC------ccchHHHH
Confidence 3345679999999999998764332 222 2455666666677766666666666655443322 45566778
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 042756 199 LCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~ 217 (425)
|...|+.+.|...|.....
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888999999998888776
No 261
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.69 E-value=49 Score=31.52 Aligned_cols=80 Identities=10% Similarity=-0.169 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 224 ~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
..++..+.-+|.|.+++..|.+.-+.....+ .+|.-.---=-.+|...|+++.|...|+++++. .|+-..-..=+..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIK 333 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 4678888999999999999999999887754 235555555567899999999999999999864 7887777666666
Q ss_pred HHH
Q 042756 304 CST 306 (425)
Q Consensus 304 ~~~ 306 (425)
|.+
T Consensus 334 l~~ 336 (397)
T KOG0543|consen 334 LKQ 336 (397)
T ss_pred HHH
Confidence 644
No 262
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=80.41 E-value=52 Score=30.99 Aligned_cols=235 Identities=10% Similarity=0.074 Sum_probs=120.9
Q ss_pred HHHHhhHHHHHHHHHHhHHh---cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCC
Q 042756 30 CLTARLTKQGQRFLSSLALA---VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESW 106 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~---~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~ 106 (425)
.+...+..+|+..+.....+ ..--..+|..+..+.++.|.++.++..-.. .++.|.+.....
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~s--------------qi~~a~~~~ds~- 80 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVS--------------QIDTARELEDSD- 80 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHH--------------HHHHHHHHHHHH-
Confidence 34445666677666665554 233456667777777777765554432211 122233322222
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCc-hhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh---hcC
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE-RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV---NSS 182 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~-~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~---~~~ 182 (425)
.-...|-.+-.++-+.-++.+++++=..-..-.+... ...-..-.++-+++...+.+ +++++-|+... .+.
T Consensus 81 --~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~f---q~~Lesfe~A~~~A~~~ 155 (518)
T KOG1941|consen 81 --FLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVF---QKALESFEKALRYAHNN 155 (518)
T ss_pred --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHH---HHHHHHHHHHHHHhhcc
Confidence 1233455555555555555555553322211111100 00011223455555555553 34444444333 222
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHH----cCCCCCHHHHHHH-----HHHHHcCCCHHHHHHHHHHHHH-
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV----KGLEPSGFEYKCI-----IYGYGRLGLLEDMERIVNQMES- 252 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~ty~~l-----l~~~~~~g~~~~a~~~~~~m~~- 252 (425)
........+|-.|-+.|.+..++++|.-+.....+ -++.-=..-|..+ --++-..|++.+|.+.-++-.+
T Consensus 156 ~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 156 DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 22223345888899999999999988876655543 2222212233333 2345666777666666665443
Q ss_pred ---CCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 253 ---DGTRV-DTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 253 ---~g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
.|-.+ -+.+.-.+-+.|-..|+.+.|..=|+.
T Consensus 236 al~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 236 ALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 33222 245556677888889998888776665
No 263
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=80.29 E-value=35 Score=28.94 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=69.3
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
|+..---.|-.+..+.|+..+|+..|++......-.++. ..-.+-++....+++..+...++.+.+..+.+ -+||
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a---~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~--r~pd 161 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA---MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF--RSPD 161 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH---HHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc--CCCC
Confidence 344444446677777777777777777765543332322 33455566666666433333333333333222 2354
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMER 245 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~ 245 (425)
+--.+-+.|...|..+.|..-|+..... -|+...-.-.-..+.+.|+.+++..
T Consensus 162 --~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 162 --GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred --chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 4445566677777777777777777774 3443333333334556665555443
No 264
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=79.91 E-value=28 Score=27.61 Aligned_cols=94 Identities=17% Similarity=0.074 Sum_probs=54.2
Q ss_pred HHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHH
Q 042756 120 FLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL 199 (425)
Q Consensus 120 ~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 199 (425)
+++..|+++.|++.|.+...- -|...+.||.--.++--.|+.+++.+-++...+..... ...-...|----..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQAFVQRGLLY 125 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHH
Confidence 466778888888888876543 12223478888888888888544433333333332111 111112333333445
Q ss_pred HhcCChhHHHHHHHHHHHcC
Q 042756 200 CEMGQPHEAENLIEEMRVKG 219 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g 219 (425)
...|+-|.|..=|+..-+.|
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 66778888887777766655
No 265
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=79.90 E-value=48 Score=30.21 Aligned_cols=119 Identities=7% Similarity=-0.021 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHH-CCCCcCHHhHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRV-KGLEPSGFEYKCIIYGYGRLG--LLEDMERIVNQMES-DGTRVDTVCSNMVLS 267 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~g--~~~~a~~~~~~m~~-~g~~~~~~~yn~li~ 267 (425)
|..|+. ++..+-+|+++|+.... ..+--|..+...+++...... ....-.++.+-+.+ .|-.++..+--.+|.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555553 24456788888884433 346678888888888887732 34455666665553 356778888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 268 SYGDHNELSRMVLWLQKMKDS-GIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~-g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.++..+++.+-.++.+.-... +-.-|..-|...|+.....|+..-.
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~ 257 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVM 257 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHH
Confidence 999999999988888876554 5566888999999999888875443
No 266
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=79.79 E-value=14 Score=33.25 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=65.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
.=|.+++..+++.++....-+.-+.-...++. +-...|-.|+|.+.+..+.++.....+...+... | .|.++
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk---IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~l--p---~y~~v 159 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK---ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSL--P---EYGTV 159 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCc--h---hhHHH
Confidence 35899999999999887665544332222332 4577888999999988888887777776555433 3 68888
Q ss_pred HHHHHh-----cCChhHHHHHH
Q 042756 196 ISGLCE-----MGQPHEAENLI 212 (425)
Q Consensus 196 i~~~~~-----~g~~~~a~~~~ 212 (425)
..-|.. .|.+++|.++.
T Consensus 160 aELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 160 AELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhccccHHHHHHHH
Confidence 888877 59999998887
No 267
>PRK11906 transcriptional regulator; Provisional
Probab=79.72 E-value=64 Score=31.54 Aligned_cols=165 Identities=14% Similarity=0.043 Sum_probs=97.9
Q ss_pred HHHHHHHHhcC-----ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh-----c-CCcccHHHHHHHHHHHhhcCC
Q 042756 115 AEIIAFLDKQG-----QREEAETLILETLSKLGSRERELVLFYCNLIDSFCK-----H-DSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 115 ~~ll~~~~~~g-----~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~-----~-g~~~~~~~~~~~~~~~~~~~~ 183 (425)
...+.+..... ..+.|..+|.+....... +|.....|..+--++.. - .......++.+.......-+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l-dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~ 335 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI-QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT 335 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC-CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC
Confidence 55666666532 356788888887632111 33223334333333221 1 122335556666666554432
Q ss_pred CCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHh
Q 042756 184 SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF-EYKCIIYGYGRLGLLEDMERIVNQMESDG-TRVDTVC 261 (425)
Q Consensus 184 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~ 261 (425)
-|......+-.+..-.++++.|..+|++... +.||.. +|-..--.++-+|+.++|.+.++.-.+.. .+.-...
T Consensus 336 ---~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 336 ---VDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred ---CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 2444555555556777889999999999887 456532 44444445566899999999999855542 2223444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 262 SNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 262 yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
---.|+.|+..+ .++|.++|-+-.
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~ 434 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKET 434 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhcc
Confidence 455566787776 688888877643
No 268
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.12 E-value=25 Score=26.48 Aligned_cols=35 Identities=14% Similarity=0.094 Sum_probs=14.8
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 217 ~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
...+.|+..+..+.++||-+.+|+..|.++|+..+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 269
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=79.04 E-value=39 Score=28.70 Aligned_cols=126 Identities=10% Similarity=0.069 Sum_probs=86.3
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC---CCCCHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG---LEPSGFEYKC 229 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~ty~~ 229 (425)
-.|-.++.+.|+ ..|+...+.+....- .--|....-.+-++....+++..|...++.+.+.+ -.|| +.-.
T Consensus 93 ~rLa~al~elGr---~~EA~~hy~qalsG~--fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll 165 (251)
T COG4700 93 YRLANALAELGR---YHEAVPHYQQALSGI--FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLL 165 (251)
T ss_pred HHHHHHHHHhhh---hhhhHHHHHHHhccc--cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHH
Confidence 468888999999 566666666654321 33455677778888888999999999999998864 2333 4445
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHh
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM----VLWLQKMKD 287 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A----~~l~~~M~~ 287 (425)
+-..+...|...+|+.-|+...+.--.|...+|- -..+++.|+.++| ..+++...+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y--~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYY--AEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 5678889999999999999988864333333333 2345566666555 445555544
No 270
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.36 E-value=5.5 Score=22.63 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
+|..+-.+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 566666677777777777777766655
No 271
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=77.28 E-value=24 Score=36.03 Aligned_cols=87 Identities=7% Similarity=0.036 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK--------GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~y 262 (425)
.|..-...|.+.|+.+.-.+.+-+...- .++-|..-.-.|-+++.+.|.-++|.+.|-+-.. |
T Consensus 811 ~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p----- 881 (1189)
T KOG2041|consen 811 EWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P----- 881 (1189)
T ss_pred HHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----
Confidence 5555666666666555444433333221 2333455566677777777777777666543222 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 263 NMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 263 n~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
-+-++.|....++.+|.++-++..
T Consensus 882 kaAv~tCv~LnQW~~avelaq~~~ 905 (1189)
T KOG2041|consen 882 KAAVHTCVELNQWGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Confidence 234566777778888877766543
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=77.20 E-value=7.2 Score=22.11 Aligned_cols=28 Identities=7% Similarity=0.068 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.+|..+-..|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4678888888889999999998888765
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=77.16 E-value=35 Score=27.12 Aligned_cols=90 Identities=13% Similarity=-0.031 Sum_probs=53.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-CCCcCH---HhHHHHHHHHHhcC
Q 042756 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-GTRVDT---VCSNMVLSSYGDHN 273 (425)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~---~~yn~li~~~~~~g 273 (425)
+.+..|++++|++.|.+.... .+-....||.-..++--.|+.++|.+=+++..+. |-+ +. ..|..=-..|-..|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 456677777777777776653 2235667777777777777777777766665543 322 21 12222223344566
Q ss_pred CHHHHHHHHHHHHhCC
Q 042756 274 ELSRMVLWLQKMKDSG 289 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~g 289 (425)
+-+.|..=|....+-|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6677766666665554
No 274
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.43 E-value=30 Score=26.04 Aligned_cols=78 Identities=15% Similarity=0.078 Sum_probs=54.2
Q ss_pred HHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 226 EYKCIIYGYGRLGL--LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 226 ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
.|..=-..|....+ .-+..+-++.+....+.|+.....+.+.+|-+.+++..|+++|+-.+.. +.+....|..+++-
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHH
Confidence 34444445555444 4467888888888899999999999999999999999999999987643 23333388888875
Q ss_pred H
Q 042756 304 C 304 (425)
Q Consensus 304 ~ 304 (425)
+
T Consensus 89 l 89 (108)
T PF02284_consen 89 L 89 (108)
T ss_dssp H
T ss_pred H
Confidence 4
No 275
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.30 E-value=42 Score=27.64 Aligned_cols=90 Identities=19% Similarity=0.192 Sum_probs=52.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 042756 200 CEMGQPHEAENLIEEMRVKGLEPSGF---EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g~~p~~~---ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~ 276 (425)
.+.++.+++..++..+.. +.|... ++..+ .+..+|+|.+|..+|+++.+.+ |....-.+|+..|.....-.
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence 456788888888888876 455433 44433 4678899999999999987763 33333344444443332222
Q ss_pred HHHHHHHHHHhCCCCCCHH
Q 042756 277 RMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 277 ~A~~l~~~M~~~g~~pd~~ 295 (425)
.=...-.++.+.+-.|+..
T Consensus 95 ~Wr~~A~evle~~~d~~a~ 113 (160)
T PF09613_consen 95 SWRRYADEVLESGADPDAR 113 (160)
T ss_pred HHHHHHHHHHhcCCChHHH
Confidence 2223344556655444443
No 276
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=75.81 E-value=65 Score=30.94 Aligned_cols=136 Identities=8% Similarity=-0.073 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----G-LEPSGF 225 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~ 225 (425)
.|..|-+.|--.|+++.+....+.=.....+...--.-...+..+-+++.-.|+++.|.+.|+.-... | -.....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45666666666777655443333222222221111122347888899999999999999999876532 2 122344
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH----C-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMES----D-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~----~-g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
+.-++-++|.-..+++.|+.++..-.. . ...-....|-+|-.+|...|..++|+.+...-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566777888888899999999885432 1 112256788899999999999999988776654
No 277
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=75.67 E-value=33 Score=33.71 Aligned_cols=67 Identities=10% Similarity=0.011 Sum_probs=42.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS 158 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~ 158 (425)
+.++|++.|++|.+.....-+-.+...|+.++...+...++..++.+..+...+ .+....|++.+-.
T Consensus 274 r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lp--kSAti~YTaALLk 340 (539)
T PF04184_consen 274 RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLP--KSATICYTAALLK 340 (539)
T ss_pred ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCC--chHHHHHHHHHHH
Confidence 467788888887654312123446667888888888888888888887532222 2223456664433
No 278
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=73.73 E-value=1.3e+02 Score=31.98 Aligned_cols=241 Identities=9% Similarity=-0.003 Sum_probs=123.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHhHHh-cCCCHH-------HHHHHHHHHHh-cCChHHHHHHHHhhhCCCCCCCchhhhHHH
Q 042756 26 TLVQCLTARLTKQGQRFLSSLALA-VTRDSK-------AASRLISKFVA-SSPQFIALNALSHLLSPDTTHPRLSSLAFP 96 (425)
Q Consensus 26 ~~~~~l~~~~~~~a~~~~~~m~~~-~~~d~~-------~~~~ll~~~~~-~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~ 96 (425)
+.+......++.+|..++++.... ..|+.. .++.|=.-... .|+++.+.++...
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~----------------- 483 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARL----------------- 483 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHH-----------------
Confidence 356777778888999988888877 443322 12211111111 1233333333222
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH--HHhcCC--cccHHHHH
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS--FCKHDS--KRGFDDTY 172 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~--~~~~g~--~~~~~~~~ 172 (425)
....+.+. ...+....+..+..+..-.|++++|..+..+..+....-+......|..+..+ +...|. ....+.++
T Consensus 484 al~~L~~~-~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 484 ALVQLPEA-AYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred HHHhcccc-cchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22223222 24456667777888888999999999887776553221121112234444333 233442 11223334
Q ss_pred HHHHHHhhcC-CCCccChhHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHH
Q 042756 173 ARLNQLVNSS-SSVYVKRQALKSMISGLCEM-GQPHEAENLIEEMRVKGLEPSGFE--YKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 173 ~~~~~~~~~~-~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~t--y~~ll~~~~~~g~~~~a~~~~~ 248 (425)
.......... ..-.+-..++.-++.++.+. +...++..-++.-......|-..- +..|.......|+.++|....+
T Consensus 563 ~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 563 NLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4433332111 11112234666677777662 122223323333223222332222 2367888899999999999999
Q ss_pred HHHHCCCCc----CHHhHHHHHHH--HHhcCCHHHHHHHHHH
Q 042756 249 QMESDGTRV----DTVCSNMVLSS--YGDHNELSRMVLWLQK 284 (425)
Q Consensus 249 ~m~~~g~~~----~~~~yn~li~~--~~~~g~~~~A~~l~~~ 284 (425)
++......+ +-.+--..+.. ....|+..+|.....+
T Consensus 643 ~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 643 ELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 988653333 32222223332 2457777777766655
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=73.44 E-value=73 Score=29.01 Aligned_cols=142 Identities=11% Similarity=0.033 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh----c--CCCchh----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSK----L--GSRERE----LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~--~~~~~~----~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (425)
.|+.-...+.+..+++.|...+++..+- + ....++ ...+...++.+|...+..+..+++.+.+..+..+.
T Consensus 38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~ 117 (278)
T PF08631_consen 38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY 117 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC
Confidence 4555555555544788877777664332 1 111111 13466778889999999888888888877775443
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHCCCCcCH
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY---GRLGLLEDMERIVNQMESDGTRVDT 259 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~---~~~g~~~~a~~~~~~m~~~g~~~~~ 259 (425)
+. .| .++-.-|+.+.+.++.+.+.+++.+|...-. -....+..++..+ .... ...|...++.+...-+.|..
T Consensus 118 ~~-~~--~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 118 GN-KP--EVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred CC-Cc--HHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCCh
Confidence 22 12 3666778888889999999999999998632 1334555555554 3333 34566666666655445544
No 280
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.23 E-value=51 Score=28.76 Aligned_cols=81 Identities=7% Similarity=0.021 Sum_probs=34.0
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH--hCCCCCCHHHHHHHHHHHHHHH
Q 042756 231 IYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK--DSGIPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~--~~g~~pd~~t~~~ll~~~~~~~ 308 (425)
++.+.+.+.+.+|.+...+-.+.. +.|.-+-..+++.||-.|++++|..=++-.- +....+-..+|..+|.+-.--.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~R~ 86 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAARN 86 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHH
Confidence 344444445555554444433321 1233444445555555555555543333221 1122334445555554433333
Q ss_pred HHHH
Q 042756 309 SMLQ 312 (425)
Q Consensus 309 ~~~~ 312 (425)
.++.
T Consensus 87 evfa 90 (273)
T COG4455 87 EVFA 90 (273)
T ss_pred HHhc
Confidence 3333
No 281
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=70.84 E-value=1e+02 Score=29.54 Aligned_cols=215 Identities=13% Similarity=0.067 Sum_probs=112.9
Q ss_pred HHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHhc
Q 042756 64 FVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLD--KQGQREEAETLILETLSKL 141 (425)
Q Consensus 64 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~--~~g~~~~A~~l~~~m~~~~ 141 (425)
|.+..+-+..++.+..-+.-.+ .+.-+.|.++-.+-. +.+.-|..-.-.++.+-. -.|+.++|.+-|+.|...
T Consensus 75 yfr~rKRdrgyqALStGliAag--AGda~lARkmt~~~~--~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d- 149 (531)
T COG3898 75 YFRERKRDRGYQALSTGLIAAG--AGDASLARKMTARAS--KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD- 149 (531)
T ss_pred HHHHHHhhhHHHHHhhhhhhhc--cCchHHHHHHHHHHH--hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-
Confidence 3344444455555544332211 123344544444322 123334444444555544 359999999999999753
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-C
Q 042756 142 GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-L 220 (425)
Q Consensus 142 ~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~ 220 (425)
|+-... -..-|.-.--+.|+.+.+. +...+........ | =.+.+.+...|..|+++.|+++.+.-++.. +
T Consensus 150 --PEtRll-GLRgLyleAqr~GareaAr---~yAe~Aa~~Ap~l-~--WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi 220 (531)
T COG3898 150 --PETRLL-GLRGLYLEAQRLGAREAAR---HYAERAAEKAPQL-P--WAARATLEARCAAGDWDGALKLVDAQRAAKVI 220 (531)
T ss_pred --hHHHHH-hHHHHHHHHHhcccHHHHH---HHHHHHHhhccCC-c--hHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence 221111 1122222334556643332 2222222222111 1 178899999999999999999999887654 5
Q ss_pred CCCHHH--HHHHHHHHH--c-CCCHHHHHHHHHHHHHCCCCcCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 221 EPSGFE--YKCIIYGYG--R-LGLLEDMERIVNQMESDGTRVDTVCSN-MVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 221 ~p~~~t--y~~ll~~~~--~-~g~~~~a~~~~~~m~~~g~~~~~~~yn-~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
.+|..- -..|+.+-+ . ..|...|...-.+ ...+.||.+--. .--.+|.+.|+..++-++++.+=+..=.|+.
T Consensus 221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~--a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i 298 (531)
T COG3898 221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALE--ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI 298 (531)
T ss_pred chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH--HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH
Confidence 565442 223332211 1 1234444443333 233455533322 2346778888888888888888777556665
No 282
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.26 E-value=17 Score=31.51 Aligned_cols=77 Identities=12% Similarity=-0.024 Sum_probs=46.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
+.-++.+.+.+.+++|+...++-.+.. |.....-..++..||-.|+++++..-++..-++.++ ..+....|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak----Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~---~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK----PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ---DTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC----CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc---cchHHHHHHH
Confidence 335667777788888888776655431 111223456788888888877766666666665433 2234456666
Q ss_pred HHHH
Q 042756 195 MISG 198 (425)
Q Consensus 195 li~~ 198 (425)
+|.+
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 6654
No 283
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=69.52 E-value=19 Score=22.85 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=15.2
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 042756 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVL 301 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll 301 (425)
+.|-+.++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555554444444443
No 284
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=69.23 E-value=66 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHhHHh-cCCCHHHHHHHHHHHHhcCC
Q 042756 42 FLSSLALA-VTRDSKAASRLISKFVASSP 69 (425)
Q Consensus 42 ~~~~m~~~-~~~d~~~~~~ll~~~~~~~~ 69 (425)
.+..+... ++|+...|..+|+.+.+.|.
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Confidence 33333333 55555566666666666554
No 285
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=68.65 E-value=18 Score=22.89 Aligned_cols=31 Identities=19% Similarity=0.508 Sum_probs=17.0
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
+.|-+.++..+++.|.+.|+..+...|+.++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555555555555555555444
No 286
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=68.39 E-value=1.3e+02 Score=29.81 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=31.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC-CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESD-GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
+-.++-+.|+.++|.+.|.+|.+. ...-+......||.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 344445566666666666666532 11112334555666666666666666666654
No 287
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.16 E-value=49 Score=24.89 Aligned_cols=87 Identities=14% Similarity=0.046 Sum_probs=54.9
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
.++|.-+-+-+...+-. ...+--+=+..+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 34555555544443321 1222222344567789999999888776 3689888877754 366777778888888
Q ss_pred HHhCCCCCCHHHHHH
Q 042756 285 MKDSGIPFSVRTYNS 299 (425)
Q Consensus 285 M~~~g~~pd~~t~~~ 299 (425)
|...| .|...+|..
T Consensus 94 la~sg-~p~lq~Faa 107 (115)
T TIGR02508 94 LAASG-DPRLQTFVA 107 (115)
T ss_pred HHhCC-CHHHHHHHH
Confidence 88776 565555543
No 288
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=67.80 E-value=91 Score=27.87 Aligned_cols=173 Identities=9% Similarity=0.010 Sum_probs=97.8
Q ss_pred hhhhHHHHHHHhhhcCCC-ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcC-----
Q 042756 90 LSSLAFPLYMRITEESWF-QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHD----- 163 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g----- 163 (425)
.+++|.+-|+.+..+... ++...+.-.++.++-+.++.+.|+..+++........ ++ .-|..-|.+++..-
T Consensus 49 n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~-~n--~dY~~YlkgLs~~~~i~~~ 125 (254)
T COG4105 49 NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTH-PN--ADYAYYLKGLSYFFQIDDV 125 (254)
T ss_pred CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCC-CC--hhHHHHHHHHHHhccCCcc
Confidence 678888888888765432 3456667778888999999999999999988754432 22 13556666666432
Q ss_pred --CcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 042756 164 --SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241 (425)
Q Consensus 164 --~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~ 241 (425)
|...+.+++..|.+.... |=+..-...|.......... =..-=-.+-+-|.+.|.+.
T Consensus 126 ~rDq~~~~~A~~~f~~~i~r-----------------yPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 126 TRDQSAARAAFAAFKELVQR-----------------YPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLKRGAYV 184 (254)
T ss_pred ccCHHHHHHHHHHHHHHHHH-----------------CCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcChH
Confidence 222344555555444432 22222222222222222111 0011123445577777777
Q ss_pred HHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 242 DMERIVNQMESDGTRVD---TVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~---~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.|..-++.|.+. ..-+ ....-.|..+|-..|..++|.+.-.-+..
T Consensus 185 AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 185 AAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 777777777765 2222 23344455677777777777666444443
No 289
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=67.67 E-value=30 Score=35.18 Aligned_cols=75 Identities=11% Similarity=0.036 Sum_probs=36.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHcCCCHH------HHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKG--LEPSGFEYKCIIYGYGRLGLLE------DMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~ty~~ll~~~~~~g~~~------~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
+++.+|..+|++-.+.++++.+...+ -+-=...||..|+.+.++|.++ .|.++++.- -+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 56666666666666666666655442 1222334555555555555432 122222222 233455555555
Q ss_pred HHHHHh
Q 042756 266 LSSYGD 271 (425)
Q Consensus 266 i~~~~~ 271 (425)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 555444
No 290
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.62 E-value=1e+02 Score=28.28 Aligned_cols=71 Identities=20% Similarity=0.164 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCcCHHhH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-----DGTRVDTVCS 262 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~y 262 (425)
+++.+-+.|..+|.+.+|.++-++...-. +.+...+-.++..++..||--.+.+-++.+.+ -|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 55666677777777777777777666532 23556666777777777776555555555532 3555544433
No 291
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=67.23 E-value=11 Score=34.37 Aligned_cols=29 Identities=10% Similarity=0.199 Sum_probs=14.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042756 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIP 291 (425)
Q Consensus 263 n~li~~~~~~g~~~~A~~l~~~M~~~g~~ 291 (425)
|..|..-++.|++++|++|++|.++.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34444444455555555555554444443
No 292
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.17 E-value=1.4e+02 Score=30.30 Aligned_cols=132 Identities=14% Similarity=0.177 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
.-+.+.+.+.++|..++|+++- ++++ .-.....+.|+ ++.|+++..+... ..-|
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d------~rFelal~lgr---l~iA~~la~e~~s--------~~Kw 669 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPD------QRFELALKLGR---LDIAFDLAVEANS--------EVKW 669 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChh------hhhhhhhhcCc---HHHHHHHHHhhcc--------hHHH
Confidence 3444666666777776666541 1222 11223335666 5566665555422 2389
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
..|-++..+.|++..|.+.|.+. .-|..|+-.+...|+-+....+-..-++.|. .|.-.-+|...
T Consensus 670 ~~Lg~~al~~~~l~lA~EC~~~a---------~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~ 734 (794)
T KOG0276|consen 670 RQLGDAALSAGELPLASECFLRA---------RDLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLS 734 (794)
T ss_pred HHHHHHHhhcccchhHHHHHHhh---------cchhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHc
Confidence 99999999999999999988865 4467788888888888877777777777664 34444567778
Q ss_pred CCHHHHHHHHHHH
Q 042756 273 NELSRMVLWLQKM 285 (425)
Q Consensus 273 g~~~~A~~l~~~M 285 (425)
|+++++.+++.+-
T Consensus 735 g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 735 GDYEECLELLIST 747 (794)
T ss_pred CCHHHHHHHHHhc
Confidence 9999888877653
No 293
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=67.12 E-value=1.1e+02 Score=28.37 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC--CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS--VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
..++...| |+.+-..++.+.+.+....... ...+...-..++....+.|..+.-..+++..... ++..--..+
T Consensus 133 ~~~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~---~~~~~k~~~ 207 (324)
T PF11838_consen 133 ALLLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNS---TSPEEKRRL 207 (324)
T ss_dssp HHHHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTT---STHHHHHHH
T ss_pred HHHHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhcc---CCHHHHHHH
Confidence 33455555 7766667777777776654221 1233346666777777777766655555555542 366777888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcCCH--HHHHHHHHH
Q 042756 231 IYGYGRLGLLEDMERIVNQMESDG-TRVDTVCSNMVLSSYGDHNEL--SRMVLWLQK 284 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~yn~li~~~~~~g~~--~~A~~l~~~ 284 (425)
+.+.+...+.+...++++.....+ +++. .. ..++.++...+.. +.+.+.+.+
T Consensus 208 l~aLa~~~d~~~~~~~l~~~l~~~~v~~~-d~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 208 LSALACSPDPELLKRLLDLLLSNDKVRSQ-DI-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHCTSTS-TT-TH-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHcCCcccccH-HH-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 888888888888888888877754 4433 23 3444444433332 555555443
No 294
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=66.93 E-value=17 Score=20.27 Aligned_cols=28 Identities=7% Similarity=0.093 Sum_probs=20.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
..|..+-..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566677788888888888888888764
No 295
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=66.70 E-value=6.1 Score=31.26 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=12.6
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
.-.+|..+|..|.++|-.|| .|+.|+.
T Consensus 110 sk~DaY~VF~kML~~G~pPd--dW~~Ll~ 136 (140)
T PF11663_consen 110 SKTDAYAVFRKMLERGNPPD--DWDALLK 136 (140)
T ss_pred cCCcHHHHHHHHHhCCCCCc--cHHHHHH
Confidence 33444555555555554444 3444443
No 296
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.99 E-value=1e+02 Score=27.83 Aligned_cols=161 Identities=10% Similarity=0.059 Sum_probs=70.9
Q ss_pred ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCCh
Q 042756 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205 (425)
Q Consensus 126 ~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 205 (425)
..++|+.-|++..+..+....-..-...-+|.-+.+.++++++.+.+..+.....+.-.-.-+..+-|+++.--+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 44555555555544322211111112233455555555544333333333332222100001123555665555555554
Q ss_pred hHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----CC------CcCHHhHHHHHHHH
Q 042756 206 HEAENLIEEMRVK-----GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-----GT------RVDTVCSNMVLSSY 269 (425)
Q Consensus 206 ~~a~~~~~~m~~~-----g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-----g~------~~~~~~yn~li~~~ 269 (425)
+..-++|+.-... +-+.=-.|-+.+-+.|...|++....+++.++... |- .--...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 4444443332211 10111124455556666667776666666666542 10 00134566666666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042756 270 GDHNELSRMVLWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~ 286 (425)
-...+-.+-..+|+...
T Consensus 202 T~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhcccHHHHHHHHHHH
Confidence 65555555555666543
No 297
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.40 E-value=11 Score=20.20 Aligned_cols=21 Identities=5% Similarity=-0.061 Sum_probs=11.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 042756 263 NMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 263 n~li~~~~~~g~~~~A~~l~~ 283 (425)
..+-..+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344455555666666655543
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.55 E-value=47 Score=30.28 Aligned_cols=73 Identities=7% Similarity=0.017 Sum_probs=57.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK-----DSGIPFSVRTYNS 299 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~t~~~ 299 (425)
+++..-..|..+|.+.+|.++.+...... +.+...|-.||..|+..|+--.|.+-|++|. +-|+..|...++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieew 358 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEW 358 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHH
Confidence 44556678999999999999999877653 3478889999999999999888888888874 3577777665543
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.99 E-value=68 Score=27.57 Aligned_cols=82 Identities=17% Similarity=0.118 Sum_probs=51.8
Q ss_pred HHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHH
Q 042756 121 LDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLC 200 (425)
Q Consensus 121 ~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 200 (425)
..+.| -+.|.+.|-++...+...++. ..-.|-..|. ..+.+++...+....+....+.. +|...+.+|.+.|-
T Consensus 117 Wsr~~-d~~A~~~fL~~E~~~~l~t~e---lq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~--~n~eil~sLas~~~ 189 (203)
T PF11207_consen 117 WSRFG-DQEALRRFLQLEGTPELETAE---LQYALATYYT-KRDPEKTIQLLLRALELSNPDDN--FNPEILKSLASIYQ 189 (203)
T ss_pred hhccC-cHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHHH
Confidence 34444 455777777776655544433 3334555555 44556677777777777666643 45558888888888
Q ss_pred hcCChhHHH
Q 042756 201 EMGQPHEAE 209 (425)
Q Consensus 201 ~~g~~~~a~ 209 (425)
+.|+++.|.
T Consensus 190 ~~~~~e~AY 198 (203)
T PF11207_consen 190 KLKNYEQAY 198 (203)
T ss_pred Hhcchhhhh
Confidence 888888775
No 300
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=63.98 E-value=21 Score=20.00 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+|..+-..|...|+.++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777788888888888877653
No 301
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.31 E-value=54 Score=32.08 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=79.0
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 042756 162 HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241 (425)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~ 241 (425)
.|+ ...+-+.++......+.. |+..-..+.| +...|++|.++......... +.....+..+++....+.|+++
T Consensus 302 ~gd---~~aas~~~~~~lr~~~~~-p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 302 DGD---IIAASQQLFAALRNQQQD-PVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred ccC---HHHHHHHHHHHHHhCCCC-chhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHH
Confidence 456 555555666555544332 6654444444 45679999999888766543 4456778999999999999999
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
+|..+-+.|....|. +.....+-...--..|-++++.-.+++..
T Consensus 375 ~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 375 EALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 999999999988876 33333333334445566777777776654
No 302
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.75 E-value=42 Score=28.55 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=20.3
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.|+..+|..++..+...|+.++|.++..++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46666666666666666666666666666553
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.38 E-value=1.4e+02 Score=28.03 Aligned_cols=151 Identities=11% Similarity=-0.009 Sum_probs=96.1
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh--HHHHHHH--H
Q 042756 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ--ALKSMIS--G 198 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~li~--~ 198 (425)
..|++.+|-..++++.+. -|.....+.-.=++|.-.|..++...+++.+... ..||.- +|-.=|. +
T Consensus 115 ~~g~~h~a~~~wdklL~d----~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~------wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD----YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK------WNADLPCYSYVHGMYAFG 184 (491)
T ss_pred ccccccHHHHHHHHHHHh----CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc------cCCCCcHHHHHHHHHHhh
Confidence 346777777778888765 2222334566667888888865555555444332 123321 3322233 3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCcCHHhHHHHHHHHHhcCCH
Q 042756 199 LCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD---GTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~yn~li~~~~~~g~~ 275 (425)
+..+|-+++|.+.-++-.+-+ +-|...-.+....+--.|+++++.++...-.+. +--.-.+-|--..-.+...+++
T Consensus 185 L~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccch
Confidence 345899999999988887753 346667777777788889999999887765432 2222234444455556677999
Q ss_pred HHHHHHHHH
Q 042756 276 SRMVLWLQK 284 (425)
Q Consensus 276 ~~A~~l~~~ 284 (425)
+.|+++|++
T Consensus 264 e~aleIyD~ 272 (491)
T KOG2610|consen 264 EKALEIYDR 272 (491)
T ss_pred hHHHHHHHH
Confidence 999999996
No 304
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=60.95 E-value=49 Score=25.24 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 499999999999999999999998876
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=60.75 E-value=98 Score=25.78 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=62.0
Q ss_pred hhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 042756 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180 (425)
Q Consensus 101 m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~ 180 (425)
+.+.+ +.|....|..++..+.+.|++....+++.- ...++.. . .-..|+. +... . ..+.+.-.+|..
T Consensus 20 l~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi~DSk-~-lA~~LLs-~~~~-~----~~~~Ql~lDMLk 86 (167)
T PF07035_consen 20 LNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVIPDSK-P-LACQLLS-LGNQ-Y----PPAYQLGLDMLK 86 (167)
T ss_pred HHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----cccCCcH-H-HHHHHHH-hHcc-C----hHHHHHHHHHHH
Confidence 33344 667777777777777777776655444333 1111211 1 1112222 1111 1 123333333332
Q ss_pred cCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 181 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
.-+. .+..+++.+...|++-+|+++.+..... +......++.+-.+.+|...=..+|+-..+
T Consensus 87 RL~~------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 RLGT------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred Hhhh------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2111 5666667777777777777776654221 112234455565566665554444444444
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=1.3e+02 Score=26.95 Aligned_cols=223 Identities=12% Similarity=0.027 Sum_probs=128.1
Q ss_pred HHHHHHHHHHhHHhcCCCH----HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC------chhhhHHHHHHHhhhcC
Q 042756 36 TKQGQRFLSSLALAVTRDS----KAASRLISKFVASSPQFIALNALSHLLSPDTTHP------RLSSLAFPLYMRITEES 105 (425)
Q Consensus 36 ~~~a~~~~~~m~~~~~~d~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~------~~~~~a~~lf~~m~~~~ 105 (425)
..+|.++...-...++||- ..|..--.+|-.+.+++++-..+.+...-.-... ..++.|.-+.++|.+-.
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kls 88 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLS 88 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455555555444466764 4555666677777888888887777642111000 13455556666665432
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (425)
--...|+-....|...|..+.|-..+++.-+......|+. ...|.--+...-..++ ...+++++.+
T Consensus 89 ---Evvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr---~~ma~el~gk------- 155 (308)
T KOG1585|consen 89 ---EVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDR---DQMAFELYGK------- 155 (308)
T ss_pred ---HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch---HHHHHHHHHH-------
Confidence 2345677778888888888877777766554333333332 2334333333333333 4444444433
Q ss_pred CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---CC
Q 042756 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL----EPSG-FEYKCIIYGYGRLGLLEDMERIVNQMESDG---TR 256 (425)
Q Consensus 185 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~-~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g---~~ 256 (425)
+-..+.+...+++|--.|.+-..... -|+. ..|...|-.|.-..|+..|++.++.-.+.+ -.
T Consensus 156 ----------~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~s 225 (308)
T KOG1585|consen 156 ----------CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKS 225 (308)
T ss_pred ----------hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccCh
Confidence 33445666667776666554433211 1222 246666777778889999999999855431 12
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWL 282 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~ 282 (425)
-+..+...|+.+|- .|+.+++.+++
T Consensus 226 ed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 226 EDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 35778888898884 56677665543
No 307
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.36 E-value=1.3e+02 Score=27.66 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-----CCcCHHhHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-----TRVDTVCSNMV 265 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g-----~~~~~~~yn~l 265 (425)
.-...|..+...|++.+|+++..+..+.- . +..-|+++=.. ..++++.....+.+.+.. ..-|...|..+
T Consensus 129 ~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L---~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v 203 (291)
T PF10475_consen 129 QTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHL---SSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKV 203 (291)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44556666777888888888877776531 0 00011111000 012333333333322210 13467777777
Q ss_pred HHHHHhcCCHHHHH
Q 042756 266 LSSYGDHNELSRMV 279 (425)
Q Consensus 266 i~~~~~~g~~~~A~ 279 (425)
+.||.-.|+...+.
T Consensus 204 ~~AY~lLgk~~~~~ 217 (291)
T PF10475_consen 204 QEAYQLLGKTQSAM 217 (291)
T ss_pred HHHHHHHhhhHHHH
Confidence 77777777655543
No 308
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=60.06 E-value=6.2 Score=31.66 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
+|..|.+.+.++...++++.+...+....+ ...+.++..|++.++.+.+.+.++ ..... -...++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~---~~~~~L~~ly~~~~~~~~l~~~L~-------~~~~y-----d~~~~~ 77 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNP---DLHTLLLELYIKYDPYEKLLEFLK-------TSNNY-----DLDKAL 77 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SH---HHHHHHHHHHHCTTTCCHHHHTTT-------SSSSS------CTHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCH---HHHHHHHHHHHhcCCchHHHHHcc-------ccccc-----CHHHHH
Confidence 788888889999998988888865443333 356889999999877443333322 11111 335566
Q ss_pred HHHHhcCChhHHHHHHHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMR 216 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~ 216 (425)
..|-+.|.+++|.-++.++.
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKLG 97 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCCT
T ss_pred HHHHhcchHHHHHHHHHHcc
Confidence 66666776666666666543
No 309
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=59.92 E-value=9.9 Score=21.97 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHH
Q 042756 258 DTVCSNMVLSSYGDHNELSRMV 279 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~ 279 (425)
|...|+.+-..|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 4555555555555555555553
No 310
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=59.76 E-value=28 Score=24.84 Aligned_cols=46 Identities=11% Similarity=-0.006 Sum_probs=28.2
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CH-HHHHHHHHHHHcCCCHHHHHHH
Q 042756 201 EMGQPHEAENLIEEMRVKGLEP-SG-FEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~g~~p-~~-~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
...+.++|+..|....+.-..| +. .++..++.+|+..|++.++.++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777776653332 22 2666777777777777665554
No 311
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=59.13 E-value=9.2 Score=21.25 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=11.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 042756 267 SSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.+|.+.|+.++|.+.|++.++
T Consensus 8 ~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 8 RCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 344455556666666555544
No 312
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.20 E-value=21 Score=22.16 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5577888888888888888877554
No 313
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=57.15 E-value=50 Score=28.09 Aligned_cols=53 Identities=17% Similarity=0.082 Sum_probs=34.3
Q ss_pred hcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 201 EMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
...+.+......+..++. ...|+..+|..++.++...|+.++|.+...++...
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444444443332 35688888888888888888888888887777654
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=57.11 E-value=80 Score=23.61 Aligned_cols=72 Identities=15% Similarity=0.067 Sum_probs=56.4
Q ss_pred HHHHcCC--CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 232 YGYGRLG--LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 232 ~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
..|...- |.-++.+-++.+....+.|+....++-+++|-+.+++..|+++|+-.+.. +..+...|..+++-.
T Consensus 13 e~~F~~~~iD~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 13 ETYFNRPDIDGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHhCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 3444443 56678888888888899999999999999999999999999999977632 222555788887653
No 315
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=57.06 E-value=35 Score=31.77 Aligned_cols=77 Identities=9% Similarity=0.002 Sum_probs=51.6
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH
Q 042756 199 LCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~ 277 (425)
|.+.|.+++|++.|..-.. +-| |.++|..-..+|.+..++..|+.=.+..... =...+.+|.+.|...+
T Consensus 107 yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL--------d~~Y~KAYSRR~~AR~ 176 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL--------DKLYVKAYSRRMQARE 176 (536)
T ss_pred hhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh--------hHHHHHHHHHHHHHHH
Confidence 7788899999998887655 456 7888888888999888887766555444332 1234566666665555
Q ss_pred HHHHHHHH
Q 042756 278 MVLWLQKM 285 (425)
Q Consensus 278 A~~l~~~M 285 (425)
++.-..+.
T Consensus 177 ~Lg~~~EA 184 (536)
T KOG4648|consen 177 SLGNNMEA 184 (536)
T ss_pred HHhhHHHH
Confidence 54444444
No 316
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.67 E-value=21 Score=32.57 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=31.5
Q ss_pred CccChh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 185 VYVKRQ-ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 185 ~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
+.||.. =||.-|..-.+.|++++|+++.++.++.|+.--..||-.-+
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 335544 34578888888888888888888888877654444554433
No 317
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=56.16 E-value=1.5e+02 Score=26.97 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=43.3
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042756 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234 (425)
Q Consensus 155 li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 234 (425)
=|.+++..+++ .+++..+.+.......+.|.+.-. -|--|.|.+++..+.++-..-....-.-+...|.++...|
T Consensus 89 GIQALAEmnrW---reVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELy 163 (309)
T PF07163_consen 89 GIQALAEMNRW---REVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELY 163 (309)
T ss_pred hHHHHHHHhhH---HHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHH
Confidence 35566666663 444444444444433444543333 3333566666666666555555432222223355554444
Q ss_pred H-----cCCCHHHHHHHH
Q 042756 235 G-----RLGLLEDMERIV 247 (425)
Q Consensus 235 ~-----~~g~~~~a~~~~ 247 (425)
. =.|.+++|+++.
T Consensus 164 Ll~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 164 LLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHhccccHHHHHHHH
Confidence 3 346666666655
No 318
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=55.57 E-value=22 Score=22.07 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=19.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
+-.+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4567888888888888888887654
No 319
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.23 E-value=80 Score=23.04 Aligned_cols=62 Identities=10% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCc
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK 165 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~ 165 (425)
+.++++...+++.++.+ ....+-.+=...|+.+.|+++++.+. ++ +. +|..++.++-..|.-
T Consensus 21 ~~~v~d~ll~~~ilT~~--d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~---aF~~Fl~aLreT~~~ 82 (88)
T cd08819 21 TRDVCDKCLEQGLLTEE--DRNRIEAATENHGNESGARELLKRIV-QK----EG---WFSKFLQALRETEHH 82 (88)
T ss_pred HHHHHHHHHhcCCCCHH--HHHHHHHhccccCcHHHHHHHHHHhc-cC----Cc---HHHHHHHHHHHcCch
Confidence 55677777778866443 33333333345689999999999987 31 22 789999999988873
No 320
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.59 E-value=1e+02 Score=24.17 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=20.6
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 135 (425)
.+.++|..|...+...--+..|...-..+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4445555555444444444445555555555555555555543
No 321
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=54.34 E-value=1.4e+02 Score=25.67 Aligned_cols=80 Identities=9% Similarity=-0.036 Sum_probs=54.2
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC---CCCcCHHhHHHHHHHHHhcCC
Q 042756 198 GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD---GTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 198 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~yn~li~~~~~~g~ 274 (425)
-+.+.|+ +.|.+.|-++...+.--|+..--.+..-|. ..|.+++.+++....+. +-.+|+..+.+|...|-+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 3444454 578888888888776656555555555555 55677777777665542 335678888888888888888
Q ss_pred HHHHH
Q 042756 275 LSRMV 279 (425)
Q Consensus 275 ~~~A~ 279 (425)
.+.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 87774
No 322
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.97 E-value=2.1e+02 Score=27.62 Aligned_cols=162 Identities=11% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHhcCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH---HHHHhc
Q 042756 199 LCEMGQPHEAENLIEEMRVK---GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL---SSYGDH 272 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~~~---g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li---~~~~~~ 272 (425)
..+.|++.+|.+.|.+-... ++.|+...|-..-.+..+.|+.++|..--++..+ .|..-.-+++ .++...
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLAL 334 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcccc
Q 042756 273 NELSRMVLWLQKMKDSGIPFSV-RTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAM 351 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (425)
+++++|++-|++..+..-.+.. .|+.-...++-+..+.+.- .+-+..+....++.......+.-...||..
T Consensus 335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~y--------kilGi~~~as~~eikkayrk~AL~~Hpd~~ 406 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWY--------KILGISRNASDDEIKKAYRKLALVHHPDKN 406 (486)
T ss_pred HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHH--------HHhhhhhhcccchhhhHHHHHHHHhCCCcC
Q ss_pred eee---------ccccchhcccCcchhHHHHHHHH
Q 042756 352 KWD---------SGETKLDLHGMHLGSAYFIILQW 377 (425)
Q Consensus 352 ~~~---------~li~~~~~~~~~~~a~~~~~~~~ 377 (425)
+.+ -+-.+|...+++.++ .+.
T Consensus 407 agsq~eaE~kFkevgeAy~il~d~~kr-----~r~ 436 (486)
T KOG0550|consen 407 AGSQKEAEAKFKEVGEAYTILSDPMKR-----VRF 436 (486)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCHHHH-----hhc
No 323
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=53.66 E-value=80 Score=29.08 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=46.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 209 ENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 209 ~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
.++|+.|++.++.|.-+.|.-+.-.+...=.+.+...+|+.+.+. ..-|..|+..||.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcs 320 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCS 320 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHH
Confidence 568888888899999888888888888888889999999988873 3337777777764
No 324
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=52.62 E-value=52 Score=22.11 Aligned_cols=25 Identities=4% Similarity=0.064 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 262 SNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 262 yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
-=.+|.||...|++++|.++.+++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3345666666666666666665554
No 325
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=51.96 E-value=55 Score=28.33 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhhcCCCCcc-----ChhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYV-----KRQALKSMISGLCEMG---------QPHEAENLIEEMRVKGLEP-SGFEYKCIIY 232 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~ 232 (425)
++.+...+.+|..+.-..+| ...-|-.+-.+|++.| +.+.-.++.+..++.|++- =.+.|+++|+
T Consensus 137 vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiID 216 (236)
T TIGR03581 137 IETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIID 216 (236)
T ss_pred HHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccc
Confidence 67788888888766543444 2346777888888876 3344455555555555331 1245555555
Q ss_pred HHHcCCCHHHHHHHHHHH
Q 042756 233 GYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m 250 (425)
--.-.-+.++..+++..+
T Consensus 217 k~tG~TrpedV~~l~~~~ 234 (236)
T TIGR03581 217 KETGNTRVEDVKQLLAIV 234 (236)
T ss_pred cccCCCCHHHHHHHHHHh
Confidence 444444555555555544
No 326
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.82 E-value=3.1e+02 Score=28.76 Aligned_cols=107 Identities=12% Similarity=0.009 Sum_probs=60.7
Q ss_pred HhhHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHhc--CChHHHHHHHHhhhCCCC-------------CCCchhhhHHH
Q 042756 33 ARLTKQGQRFLSSLALA-VTRDSKAASRLISKFVAS--SPQFIALNALSHLLSPDT-------------THPRLSSLAFP 96 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~~--~~~~~a~~~~~~~l~~~~-------------~~~~~~~~a~~ 96 (425)
.+....|.++-..+... ... ...|.....-+.+. -+.+.+++.+.+-++.-. ...|+.+.|.+
T Consensus 450 r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~k 528 (829)
T KOG2280|consen 450 RHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARK 528 (829)
T ss_pred cchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHH
Confidence 33566677777776543 222 45666666666665 234455555555444311 12235666666
Q ss_pred HHHHhhhcCC---CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 042756 97 LYMRITEESW---FQWNPKLVAEIIAFLDKQGQREEAETLILETLSK 140 (425)
Q Consensus 97 lf~~m~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~ 140 (425)
+.+.=+..+. +-.+..-+...+.-+.+.|+.+-..+++-++.+.
T Consensus 529 Lle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~ 575 (829)
T KOG2280|consen 529 LLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK 575 (829)
T ss_pred HHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 6654322211 1123334666788888889999888888887653
No 327
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=51.76 E-value=86 Score=30.17 Aligned_cols=140 Identities=10% Similarity=-0.079 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLS---KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
..|..|-+.|.-.|+++.|+...++-.. ..+. ...-...+..+-+++.-.|.++.+.+-++.-..+..+-..-...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vE 274 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVE 274 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHH
Confidence 3566777777788999999886655322 1111 11112357788889988899777666555443332221112233
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVK----G-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..++-+|-++|.-..++++|+.++.+-..- + ..-....|=++-++|...|..+.|..+.+.-.+
T Consensus 275 AQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 275 AQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 457778888998889999999998876532 1 223456788888999999999998887775543
No 328
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=51.65 E-value=18 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=25.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042756 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 234 (425)
.+-|.-..|..+|..|...|-.|| .|+.|+...
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 345677889999999999999985 566666543
No 329
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=51.57 E-value=2.6e+02 Score=27.88 Aligned_cols=231 Identities=9% Similarity=-0.006 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~ 114 (425)
.+..|++-++.....- -|+.-++..-.+|...|............+..+. +...-|.- =...+
T Consensus 239 ~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-------e~rad~kl---------Iak~~ 301 (539)
T KOG0548|consen 239 DFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-------ELRADYKL---------IAKAL 301 (539)
T ss_pred hHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-------HHHHHHHH---------HHHHH
Confidence 4445555555544433 5555566666666666665555444444322211 11111111 11222
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh-hHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR-QALK 193 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 193 (425)
..+-.+|.+.++.+.|.+.|.+....... ++ +++. ... ++++.....+... +.|+. .-.-
T Consensus 302 ~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--~~-------~ls~---lk~---~Ek~~k~~e~~a~----~~pe~A~e~r 362 (539)
T KOG0548|consen 302 ARLGNAYTKREDYEGAIKYYQKALTEHRT--PD-------LLSK---LKE---AEKALKEAERKAY----INPEKAEEER 362 (539)
T ss_pred HHhhhhhhhHHhHHHHHHHHHHHhhhhcC--HH-------HHHH---HHH---HHHHHHHHHHHHh----hChhHHHHHH
Confidence 33445677778899999988886543222 11 1111 111 3333333333221 11221 1112
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhc
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD-TVCSNMVLSSYGDH 272 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~yn~li~~~~~~ 272 (425)
.=-+.+.+.|++..|+..|.++.... +-|...|..---+|.+.|.+..|.+=-+.-.+. .|+ ...|--=..++...
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~m 439 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAM 439 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHH
Confidence 22566788999999999999999875 446889999999999999999988876666664 233 22222222333334
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
.++++|++.|.+-.+. .|+..-+.--+.-|..
T Consensus 440 k~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 440 KEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 4677888888877654 3655544444444433
No 330
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=51.32 E-value=1.3e+02 Score=24.47 Aligned_cols=49 Identities=20% Similarity=0.323 Sum_probs=35.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 202 MGQPHEAENLIEEMRVKGLEPS---GFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~~p~---~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
.++++++..+++.|.- +.|+ ..+|-.. .+...|+|++|.++|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC
Confidence 6788888888888876 3443 3345444 3677888899999888888764
No 331
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=50.97 E-value=80 Score=23.91 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=12.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHH
Q 042756 194 SMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m 215 (425)
.+|..|...|+.++|..-+.++
T Consensus 7 ~~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 7 SILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHhcCCCHHHHHHHHHHh
Confidence 3444555556666666666654
No 332
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.31 E-value=1.1e+02 Score=23.28 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 788888888888889999998888877
No 333
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=49.95 E-value=1.5e+02 Score=24.53 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=46.2
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 231 IYGYGRLGLLEDMERIVNQMESDGTRVD---TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
+..-.+.++.++++.+++.+.-. .|. ..++..++ +.+.|++.+|..+|++..+.+ |....-..|+..|
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~C 87 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALC 87 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHH
Confidence 34446778999999999999865 344 44444443 468999999999999987653 4333344444444
No 334
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=49.75 E-value=2.1e+02 Score=26.24 Aligned_cols=131 Identities=12% Similarity=0.047 Sum_probs=76.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hhHH
Q 042756 118 IAFLDKQGQREEAETLILETLSKLGSRERE----LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQAL 192 (425)
Q Consensus 118 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~----~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~ 192 (425)
.+-..+.+++++|...|.++..+|...... ...+...+...|.+.|+.....+.....++.+... .+|. +...
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~f--tk~k~~Kii 87 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDF--TKPKITKII 87 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHh--cchhHHHHH
Confidence 344456677888888887776654432211 12244567777888888777766666666655443 2222 2345
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 193 KSMISGLCEM-GQPHEAENLIEEMRVKGLEPSG-----FEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 193 ~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~~-----~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
.++|.-+-.. ..++..+.+.....+.-.+-.. .-=..++.++-+.|.+.+|..+.+.+
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~l 151 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPL 151 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 5555555443 3556666666555443222111 12245788899999999888776644
No 335
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.57 E-value=1.6e+02 Score=24.95 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=12.2
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHh
Q 042756 155 LIDSFCKHDSKRGFDDTYARLNQLV 179 (425)
Q Consensus 155 li~~~~~~g~~~~~~~~~~~~~~~~ 179 (425)
-+..+.+.|+.+++.+..+.+.-..
T Consensus 19 ~~c~aFR~~r~~dFr~~rdi~e~ll 43 (200)
T cd00280 19 SACRAFREGRYEDFRRTRDIAEALL 43 (200)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHH
Confidence 3344455566555555444444443
No 336
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=49.55 E-value=1.5e+02 Score=24.48 Aligned_cols=168 Identities=17% Similarity=0.080 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
...+......+...+++..+...+........ .+.....+......+...+. ...+...+.......... ..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~ 130 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELEL--LPNLAEALLNLGLLLEALGK---YEEALELLEKALALDPDP---DL 130 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh--ccchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHcCCCCc---ch
Confidence 56677788888888999988888887664201 11112244555556666666 445555555554322111 11
Q ss_pred HHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 191 ALKSMIS-GLCEMGQPHEAENLIEEMRVKGLEP----SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 191 ~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p----~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
....... .+...|++++|...|.+... ..| ....+......+...++.+.+...+..............+..+
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 208 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNL 208 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHh
Confidence 2333333 78899999999999999855 333 3344555555577888999999999988775322146778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
-..+...+..+.|...+......
T Consensus 209 ~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 209 GLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred hHHHHHcccHHHHHHHHHHHHhh
Confidence 88888888999999999888764
No 337
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.68 E-value=4.4e+02 Score=29.35 Aligned_cols=130 Identities=14% Similarity=0.190 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
.-|-.++..+-+.+..|.+.++-....+......+....+++.+.+-+...|. ..+++..+.+..... -...+
T Consensus 984 hYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh---~~qAy~ai~~npdse----rrrdc 1056 (1480)
T KOG4521|consen 984 HYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGH---WFQAYKAILRNPDSE----RRRDC 1056 (1480)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhh---HHHHHHHHHcCCcHH----HHHHH
Confidence 34777888888888888888877776665555555556677777777777777 445555554432211 11125
Q ss_pred HHHHHHHHHhcCCh------------hHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQP------------HEAEN-LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 192 ~~~li~~~~~~g~~------------~~a~~-~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
..-++-.++.+|++ ++..+ +++.-.+.-.--...-|+-+---+...+++.+|--+.-
T Consensus 1057 LRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMY 1126 (1480)
T KOG4521|consen 1057 LRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMY 1126 (1480)
T ss_pred HHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHH
Confidence 55566666666544 33333 33322222111122345555555667777766544433
No 338
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=47.23 E-value=85 Score=21.93 Aligned_cols=42 Identities=10% Similarity=0.038 Sum_probs=34.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Q 042756 271 DHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQ 312 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~ 312 (425)
..|+.+++.+++++..+.|+.|.......+.-+..+.|....
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~~w~ 54 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGELWE 54 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 467778999999999888888888888888888888887655
No 339
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.00 E-value=1.3e+02 Score=23.02 Aligned_cols=86 Identities=10% Similarity=0.019 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
..++|..+.+-+...+. -...+--+-+..+..+|++++| +..- ...-.||...|-+|-. .+.|.-+++...+.
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A--Ll~~--~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA--LLLP--QCHCYPDLEPWAALCA--WKLGLASALESRLT 93 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH--HHHH--TTS--GGGHHHHHHHH--HHCT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH--HHhc--ccCCCccHHHHHHHHH--HhhccHHHHHHHHH
Confidence 56788888888877654 2233333445667889999999 2221 1223588888877643 57888889999988
Q ss_pred HHHhCCCCCCHHHH
Q 042756 284 KMKDSGIPFSVRTY 297 (425)
Q Consensus 284 ~M~~~g~~pd~~t~ 297 (425)
++..+| .|....|
T Consensus 94 rla~~g-~~~~q~F 106 (116)
T PF09477_consen 94 RLASSG-SPELQAF 106 (116)
T ss_dssp HHCT-S-SHHHHHH
T ss_pred HHHhCC-CHHHHHH
Confidence 887776 4444444
No 340
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.14 E-value=96 Score=23.47 Aligned_cols=66 Identities=8% Similarity=0.054 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCCCHH
Q 042756 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH--NELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 228 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~--g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
..+|.-|...||.++|...+.++..... ....-..+|...... ..-+-+..++..+.+.+..+...
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~~--~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~~~~~ 73 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPSQ--HHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLISKEQ 73 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GGG--HHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCcc--HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 4566778888999999999988644311 223333344444433 23355677888888776554333
No 341
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=46.02 E-value=2.6e+02 Score=26.36 Aligned_cols=169 Identities=8% Similarity=-0.031 Sum_probs=104.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
..+..+.-.|+...|+.+...+.+- .+.|...|..--++|...|++..|+.=+....+..- -++.+.--+-..+...|
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vg 237 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVG 237 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhh
Confidence 3455666789999999999999885 245788888889999999999999877766554432 35666667777888899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----HHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcc
Q 042756 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST----IMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDE 349 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (425)
+.+.++...++-.+ +.||...+-..-..+-+ ..+.++......| . +.....+.+++......
T Consensus 238 d~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~-------t-----~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 238 DAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW-------T-----ECLEAGEKVLKNEPEET 303 (504)
T ss_pred hHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH-------H-----HHHHHHHHHHhcCCccc
Confidence 99888888777654 46776543222222222 1112221111111 1 11122233444333322
Q ss_pred ccee---eccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 350 AMKW---DSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 350 ~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+.| ..+-++|...|++.+| ++-..+..+
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eA-----iqqC~evL~ 335 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEA-----IQQCKEVLD 335 (504)
T ss_pred ceeeeeeheeeecccccCCHHHH-----HHHHHHHHh
Confidence 3333 3445677777888888 777777665
No 342
>PHA02875 ankyrin repeat protein; Provisional
Probab=46.01 E-value=2.2e+02 Score=27.43 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=8.7
Q ss_pred HHHHHhcCChhHHHHHH
Q 042756 196 ISGLCEMGQPHEAENLI 212 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~ 212 (425)
+...++.|+.+.+..++
T Consensus 72 L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 72 LHDAVEEGDVKAVEELL 88 (413)
T ss_pred HHHHHHCCCHHHHHHHH
Confidence 44445566665544444
No 343
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.65 E-value=80 Score=22.83 Aligned_cols=59 Identities=10% Similarity=0.160 Sum_probs=38.5
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+..+++.+.+.++++++. .-..-+...+.+.|.++++.+..+|.. .|.++.+++-..|.
T Consensus 18 ~~~v~~~L~~~~Vlt~~~-----~e~I~~~~tr~~q~~~LLd~L~~RG~~-------AF~~F~~aL~~~~~ 76 (84)
T cd08326 18 PKYLWDHLLSRGVFTPDM-----IEEIQAAGSRRDQARQLLIDLETRGKQ-------AFPAFLSALRETGQ 76 (84)
T ss_pred HHHHHHHHHhcCCCCHHH-----HHHHHcCCCHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCc
Confidence 345777777777665443 222233456688899988888765321 57888888877765
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=44.54 E-value=38 Score=17.47 Aligned_cols=27 Identities=7% Similarity=0.094 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.|..+-..|...|+.++|...|.+..+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 567777788888888889888887664
No 345
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.34 E-value=95 Score=20.90 Aligned_cols=49 Identities=4% Similarity=-0.082 Sum_probs=26.5
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH-----HhcCCHHHHHHHH
Q 042756 234 YGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY-----GDHNELSRMVLWL 282 (425)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~-----~~~g~~~~A~~l~ 282 (425)
+...|++-+|.++++++=...-.+....|..||... .+.|+...|.+++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345677777777777665432223455555555543 3466666665553
No 346
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=43.95 E-value=38 Score=22.82 Aligned_cols=26 Identities=31% Similarity=0.256 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHh
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSK 140 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~ 140 (425)
-.+|.+|...|++++|.+.++++.+.
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999998753
No 347
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=42.98 E-value=1.1e+02 Score=31.91 Aligned_cols=109 Identities=13% Similarity=0.121 Sum_probs=65.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVL------FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~------~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (425)
.+.+...++-.|-...+++...++.+.++.-. ...+.+. .|.--++-=-+-|| -..|++.+..+.....
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP--~t~~vve~~nv~f~YaFALNRRNr~GD---RakAL~~~l~lve~eg 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIP--DTLKVVETHNVRFHYAFALNRRNRPGD---RAKALNTVLPLVEKEG 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCc--chhhhhccCceEEEeeehhcccCCCcc---HHHHHHHHHHHHHhcC
Confidence 44455667778888888999999999887531 0111111 12112222223344 5667777777777777
Q ss_pred CCccChhH-----HHHH--HHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 042756 184 SVYVKRQA-----LKSM--ISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225 (425)
Q Consensus 184 ~~~p~~~~-----~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 225 (425)
.+.||..+ |--+ -+.|-.++..+.|.+.|++.-+ ++|+.+
T Consensus 275 ~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~ 321 (1226)
T KOG4279|consen 275 PVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEY 321 (1226)
T ss_pred CCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhh
Confidence 78898543 2222 2345556778889999988765 566655
No 348
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=42.83 E-value=1.5e+02 Score=25.36 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHcCCC--HHHHHHHHHHHHHCCCCcCH----Hh
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK--GLEPSGFEYKCIIY-GYGRLGL--LEDMERIVNQMESDGTRVDT----VC 261 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~ty~~ll~-~~~~~g~--~~~a~~~~~~m~~~g~~~~~----~~ 261 (425)
-+....-.....|++++|.+-++++.+. .++--...|.-+.. +++..+. +.+|.-++.-....++ |+. +.
T Consensus 31 r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~-ps~~EL~V~ 109 (204)
T COG2178 31 RLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRL-PSPEELGVP 109 (204)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCC-CCHHHcCCC
Confidence 4444444555677788888888877653 12222345555555 5666653 6677777777766433 322 12
Q ss_pred HHHHHHHH--------------HhcCCHHHHHHHHHHHHh
Q 042756 262 SNMVLSSY--------------GDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 262 yn~li~~~--------------~~~g~~~~A~~l~~~M~~ 287 (425)
+-.-|.|. .+.|+++.|.+.++-|..
T Consensus 110 ~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 110 PIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22233333 346778888888777763
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=42.39 E-value=1.3e+02 Score=21.59 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=31.4
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc
Q 042756 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~ 167 (425)
...+.++|+..+....++...+ ++-..+...++.+|+..|++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~-~~rf~~lG~l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDR-EDRFRVLGYLIQAHMEWGKYRE 61 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888877665543 3445677888888888888443
No 350
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=42.27 E-value=1.5e+02 Score=30.52 Aligned_cols=83 Identities=7% Similarity=0.018 Sum_probs=52.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
+|+.+|...|++-.+.++++...........- .-.||..|+.+.+.|.++- .+..+...+...... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~-l~~~nlyi~~~~q~~sf~l-~~~~~~~~~~lq~a~-ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKIL-LPMINLYIREIIQRGSFEL-TDVLSNAKELLQQAR-LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeee-hhHHHHHHHHHHhcCCccH-HHHHHHHHHHHHHhh-cCCcchHHHHH
Confidence 69999999999999999999887532221211 2368899999999998663 333333222222211 22344488888
Q ss_pred HHHHHh
Q 042756 196 ISGLCE 201 (425)
Q Consensus 196 i~~~~~ 201 (425)
+.+-.+
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 776654
No 351
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=41.81 E-value=1.4e+02 Score=21.80 Aligned_cols=42 Identities=12% Similarity=0.118 Sum_probs=25.5
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
++|+--...|+..|...|-++++.+.-.--++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 555555556666666666666666655555666666666664
No 352
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=41.48 E-value=1.3e+02 Score=23.30 Aligned_cols=43 Identities=33% Similarity=0.532 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCCccCH-----------------HHHHHHHHHHHhcCChhHHHHHHHH
Q 042756 94 AFPLYMRITEESWFQWNP-----------------KLVAEIIAFLDKQGQREEAETLILE 136 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~-----------------~~~~~ll~~~~~~g~~~~A~~l~~~ 136 (425)
|..+.+.|.+.|++.|.+ ..+...+..+...|+++.|.++++.
T Consensus 36 ~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~~ 95 (115)
T PF12793_consen 36 ARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLDF 95 (115)
T ss_pred HHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 555666666666655444 3566688888899999999998884
No 353
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=41.40 E-value=1.4e+02 Score=21.86 Aligned_cols=59 Identities=5% Similarity=0.015 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
...+++.+.+.|+++++. .-..-+...+.+.+.++++.+..+|.. .|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gvlt~~~-----~~~I~~~~t~~~k~~~Lld~L~~RG~~-------AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDILTDSM-----AESIMAKPTSFSQNVALLNLLPKRGPR-------AFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCCCHHH-----HHHHHcCCCcHHHHHHHHHHHHHhChh-------HHHHHHHHHHhcCh
Confidence 345677777777665443 222223445678888999888766322 67888888866543
No 354
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.09 E-value=1.9e+02 Score=22.93 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=18.9
Q ss_pred HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 216 RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 216 ~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..-.+.|+.......+.+|-+.+|+..|.++|+.++.
T Consensus 76 ~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 76 FDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred hccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3334455555555555555555555555555555443
No 355
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=40.07 E-value=1.5e+02 Score=21.65 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=46.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
...|..-++...... .+++ ++|+--...|+.-|...|.++++..--+=-.+...++++.|...
T Consensus 10 ~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s~ 72 (88)
T PF12926_consen 10 AQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCSG 72 (88)
T ss_pred HHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHcc
Confidence 345665554443333 2333 89999999999999999999998888777888888888888653
No 356
>PHA02875 ankyrin repeat protein; Provisional
Probab=39.13 E-value=1.8e+02 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHcCCCHHHHHHHHH
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF--EYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
.+.+...++.|+.+ +.+.+.+.|..|+.. ...+.+...++.|+.+.+..+++
T Consensus 36 ~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 36 ISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred CCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 34445555666654 444445556555432 12234555566777766555554
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.88 E-value=2.8e+02 Score=24.67 Aligned_cols=24 Identities=8% Similarity=0.144 Sum_probs=17.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
+..+++.+|+++|++.....+.-+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 467888999999999876654433
No 358
>PRK09857 putative transposase; Provisional
Probab=38.65 E-value=2.2e+02 Score=26.21 Aligned_cols=66 Identities=12% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 227 y~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
+..++.-..+.++.++-.++++.+.+. +.......-++..-+-+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 445554445667777777777766654 222333344566666677777788888999998888765
No 359
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.95 E-value=1.8e+02 Score=24.25 Aligned_cols=60 Identities=10% Similarity=-0.081 Sum_probs=30.3
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~ 310 (425)
+.+.|++.+..= -.++..+...++.-.|.++++.+.+.+..++..|.--.|+.+...|-+
T Consensus 17 L~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 344555433222 233344433444455666666666665555555555555555555543
No 360
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=37.62 E-value=1.5e+02 Score=21.37 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=30.3
Q ss_pred cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCC
Q 042756 50 VTRDSKAASRLISKFVASSPQFIALNALSHLLSP 83 (425)
Q Consensus 50 ~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~ 83 (425)
+.|+...||.+++.....+...-+.+++.+...+
T Consensus 12 F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~V~~ 45 (83)
T PF10963_consen 12 FNPTPTAYNKYINEMAMDNKVAPAHNYLMRIVDP 45 (83)
T ss_pred eccCHHHHHHHHHHhccCCCchHHHHHHHHHcCH
Confidence 6799999999999999999999999999887643
No 361
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=37.36 E-value=1.5e+02 Score=20.87 Aligned_cols=37 Identities=16% Similarity=0.070 Sum_probs=29.2
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhc
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVAS 67 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~ 67 (425)
+..=+.+-|++++..++..-+.++..||.+-+-+.+.
T Consensus 8 LemlDtEmA~~mL~DLr~dekRsPQLYnAI~k~L~RH 44 (82)
T PF11123_consen 8 LEMLDTEMAQQMLADLRDDEKRSPQLYNAIGKLLDRH 44 (82)
T ss_pred HHHHHHHHHHHHHHHhcchhhcChHHHHHHHHHHHHc
Confidence 3344677788888888776778889999998888876
No 362
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.53 E-value=4.8e+02 Score=26.58 Aligned_cols=188 Identities=12% Similarity=-0.012 Sum_probs=103.1
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHH-HHhcCChhHHHHHHHHHHH-------hcCCCchhHHHHHHHHHHHHHhc
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAF-LDKQGQREEAETLILETLS-------KLGSRERELVLFYCNLIDSFCKH 162 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~l~~~m~~-------~~~~~~~~~~~~y~~li~~~~~~ 162 (425)
...|.+.|+.....+.+.+-...--....+ ++...+++.|..+|....+ .+.+. ...-+-.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~------a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPP------AQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCc------cccHHHHHHhcC
Confidence 456888888887776442222111122233 4466789999999988865 33111 234455666654
Q ss_pred CCcc--cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--cC
Q 042756 163 DSKR--GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE-MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG--RL 237 (425)
Q Consensus 163 g~~~--~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~--~~ 237 (425)
.... ....++..+.+....++ |+...+-..+.-... ..+...|.++|...-..|-.+ ..-+-.++...+ -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcC
Confidence 3222 25566666666655442 332222222222222 246789999999988887533 222333332222 33
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 042756 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI 290 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~ 290 (425)
.+.+.|..++...-++| .|...---..+..+.. +.++.+.-.+..+.+.|.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 36788888888888877 3332222222333333 777777777777766653
No 363
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.48 E-value=2.7e+02 Score=24.78 Aligned_cols=61 Identities=18% Similarity=0.097 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRV----KG-LEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.---|-..|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+--++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 445666778888888888888888863 34 23456677778888888888888776655543
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=35.37 E-value=1.7e+02 Score=23.49 Aligned_cols=64 Identities=13% Similarity=0.192 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 154 ~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
.+--++.+..+.+++.+....+.+..+.. ...-+.....-|--++.+.++++++.++.+.+.+.
T Consensus 37 ~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 37 NLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 56667888888888899999998887622 12222233344555788899999999999988874
No 365
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=34.52 E-value=1.5e+02 Score=20.22 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=35.0
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 255 ~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
+.|....+|.++..++...-.++++..+.+...+|. -+..+|.--++.+++
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 346667778888888877777888888888877774 356666666666655
No 366
>PRK00423 tfb transcription initiation factor IIB; Reviewed
Probab=33.77 E-value=3.9e+02 Score=24.79 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=19.6
Q ss_pred HHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcC
Q 042756 73 ALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105 (425)
Q Consensus 73 a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~ 105 (425)
++..+.++...-+.+....+.|..+|+...+.+
T Consensus 125 a~~~I~~~~~~L~Lp~~v~e~A~~iyk~~~~~~ 157 (310)
T PRK00423 125 ALSELDRIASQLGLPRSVREEAAVIYRKAVEKG 157 (310)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 333444444333444456788888888876654
No 367
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=33.60 E-value=5.1e+02 Score=26.07 Aligned_cols=77 Identities=13% Similarity=0.215 Sum_probs=46.9
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---C----------CcCHHhHHHHHHHHHhcCCHHHHHHH
Q 042756 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG---T----------RVDTVCSNMVLSSYGDHNELSRMVLW 281 (425)
Q Consensus 215 m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g---~----------~~~~~~yn~li~~~~~~g~~~~A~~l 281 (425)
+...|+..+......++... .|++..|..+++.....| + .++....-.|++++.. |+.+.++.+
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~ 267 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGC 267 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHH
Confidence 34456666666655554443 577777777776655432 1 1233334445555444 778888888
Q ss_pred HHHHHhCCCCCCH
Q 042756 282 LQKMKDSGIPFSV 294 (425)
Q Consensus 282 ~~~M~~~g~~pd~ 294 (425)
+++|...|..|..
T Consensus 268 ~~~l~~~g~~~~~ 280 (509)
T PRK14958 268 VTRLVEQGVDFSN 280 (509)
T ss_pred HHHHHHcCCCHHH
Confidence 8888888877643
No 368
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=33.47 E-value=2.4e+02 Score=22.14 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 207 EAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 207 ~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
++.++|+.|..+|+-- -+.-|...-..+.+.|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666655433 24455555556666666666666654
No 369
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.16 E-value=5.8e+02 Score=30.82 Aligned_cols=112 Identities=13% Similarity=0.054 Sum_probs=67.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHH-HHHHhhcCCCCccChhHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYAR-LNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~l 195 (425)
+-.+-.+.+.+.+|...++.-..... ...-...-|-.+...|+..+++|+++.+... +.+ | +...-
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek-~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~---------~---sl~~q 1455 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEK-EKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD---------P---SLYQQ 1455 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccc-hhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC---------c---cHHHH
Confidence 33455667888888888877311000 0111122455566699999999998888774 222 1 44455
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHH
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDM 243 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a 243 (425)
|--....|+++.|...|+++.+. .|+ ..+++-+++..-..|.++.+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~ 1502 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTE 1502 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHH
Confidence 55667788999999999998875 344 44555554444334443333
No 370
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.65 E-value=4.1e+02 Score=24.68 Aligned_cols=71 Identities=13% Similarity=0.075 Sum_probs=38.2
Q ss_pred HHhcCChhHHHHHHH-HHHHcCCCCCHH----HHHHHHHHHHcCCCHH-HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc
Q 042756 199 LCEMGQPHEAENLIE-EMRVKGLEPSGF----EYKCIIYGYGRLGLLE-DMERIVNQMESDGTRVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~-~m~~~g~~p~~~----ty~~ll~~~~~~g~~~-~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~ 272 (425)
..+...+++.....+ +|++.+ -|+.. .|..+|++---+.+-+ .|.+.++. ..+|.-|+.++|..
T Consensus 265 ~s~e~p~~evi~~VKee~k~~n-lPe~eVi~ivWs~iMsaveWnKkeelva~qalrh---------lK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 265 VSEEDPVKEVILYVKEEMKRNN-LPETEVIGIVWSGIMSAVEWNKKEELVAEQALRH---------LKQYAPLLAAFCSQ 334 (412)
T ss_pred hccCCCHHHHHHHHHHHHHhcC-CCCceEEeeeHhhhhHHHhhchHHHHHHHHHHHH---------HHhhhHHHHHHhcC
Confidence 334445566555444 444444 44443 5666666543332111 13333333 34588899999999
Q ss_pred CCHHHHH
Q 042756 273 NELSRMV 279 (425)
Q Consensus 273 g~~~~A~ 279 (425)
|+.+-.+
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 8876543
No 371
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=32.55 E-value=5.5e+02 Score=27.01 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=45.8
Q ss_pred cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC---C----------CcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 218 KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG---T----------RVDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 218 ~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g---~----------~~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
.|+..+......++... .|++..|..+++.....| | ..+......|++++.. ++...++.++++
T Consensus 194 Egi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~~-~d~~~al~~l~~ 270 (709)
T PRK08691 194 EKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGIIN-QDGAALLAKAQE 270 (709)
T ss_pred cCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 46666666666665444 477777777776654422 1 1133345556666655 778899999999
Q ss_pred HHhCCCCCC
Q 042756 285 MKDSGIPFS 293 (425)
Q Consensus 285 M~~~g~~pd 293 (425)
|...|+.+.
T Consensus 271 L~~~G~d~~ 279 (709)
T PRK08691 271 MAACAVGFD 279 (709)
T ss_pred HHHhCCCHH
Confidence 998887553
No 372
>PF13934 ELYS: Nuclear pore complex assembly
Probab=32.51 E-value=3.5e+02 Score=23.79 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=48.3
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 152 y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
|..++.++.-..+ ...+++.+.+.+- .+.|+ --.-++.++...|+.+.|++++..+.-..-. ...-..++
T Consensus 79 ~~~~~~g~W~LD~-~~~~~A~~~L~~p-----s~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~~~~~~~~ 148 (226)
T PF13934_consen 79 YIKFIQGFWLLDH-GDFEEALELLSHP-----SLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSS--PEALTLYF 148 (226)
T ss_pred HHHHHHHHHHhCh-HhHHHHHHHhCCC-----CCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--HHHHHHHH
Confidence 5566666665544 2244555544221 12222 1123666666667777777666664322111 11222222
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.+ ..++.+.+|..+-+...+. -....+..++..+.
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~ 183 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCL 183 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHH
Confidence 22 4446666666655544431 01334555555544
No 373
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.42 E-value=1.8e+02 Score=21.31 Aligned_cols=21 Identities=24% Similarity=0.104 Sum_probs=12.3
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~ 217 (425)
......|+.++|.+.+++..+
T Consensus 49 ~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 49 ELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 334445666666666666543
No 374
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.37 E-value=2.5e+02 Score=22.10 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHH
Q 042756 128 EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYA 173 (425)
Q Consensus 128 ~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~ 173 (425)
++..++|..|.++++.... ...|...-..+-..|++..++++++
T Consensus 80 ~dp~~if~~L~~~~IG~~~--AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKL--ALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhh--HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3345566666655444332 2345555555555666655655554
No 375
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=31.38 E-value=3.3e+02 Score=27.01 Aligned_cols=87 Identities=11% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042756 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 238 (425)
....|++++..+.+.-.......+. .+-.++++...+.|++++|+..-+-|....++- ........-.--..|
T Consensus 333 ~~~lg~ye~~~~~~s~~~~~~~s~~------~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~-~ei~~iaa~sa~~l~ 405 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEKIIGTTD------STLRCRLRSLHGLARWREALSTAEMMLSNEIED-EEVLTVAAGSADALQ 405 (831)
T ss_pred HHHhhhHHHHHHHhhchhhhhcCCc------hHHHHHHHhhhchhhHHHHHHHHHHHhccccCC-hhheeeecccHHHHh
Confidence 4456786655555555555544443 388999999999999999999999998776652 222222222223345
Q ss_pred CHHHHHHHHHHHHH
Q 042756 239 LLEDMERIVNQMES 252 (425)
Q Consensus 239 ~~~~a~~~~~~m~~ 252 (425)
-++++.-.|+++..
T Consensus 406 ~~d~~~~~wk~~~~ 419 (831)
T PRK15180 406 LFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHHhc
Confidence 67778777777643
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.92 E-value=3.9e+02 Score=28.85 Aligned_cols=193 Identities=11% Similarity=0.049 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc-----CCCCcc
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS-----SSSVYV 187 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~p 187 (425)
-|..|+..|...|+.++|++++.+..+.....++....-+..++..+.+.+... ...+-.+.+...+ +-.+.-
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~--~~Li~~y~~wvl~~~p~~gi~Ift 583 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAEN--LDLILEYADWVLNKNPEAGIQIFT 583 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccc--hhHHHHHhhhhhccCchhheeeee
Confidence 377799999999999999999999887431011111223455677776666531 1222222222111 111111
Q ss_pred C--h---hHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--------HHHHHHH-----HH
Q 042756 188 K--R---QAL-KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL--------LEDMERI-----VN 248 (425)
Q Consensus 188 ~--~---~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--------~~~a~~~-----~~ 248 (425)
+ . .+. ..-+-.|......+-+..+++.+....-.++..-.+.++..|+..=+ -+++.+. ..
T Consensus 584 ~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 584 SEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred ccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence 1 0 000 11334566777888899999999888777788888888888765422 1223222 11
Q ss_pred HHH--HCCCCcCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHh-------------CCCCCCHHHHHHHHHHHH
Q 042756 249 QME--SDGTRVDT--------VCSNMVLSSYGDHNELSRMVLWLQKMKD-------------SGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 249 ~m~--~~g~~~~~--------~~yn~li~~~~~~g~~~~A~~l~~~M~~-------------~g~~pd~~t~~~ll~~~~ 305 (425)
.+. ...+.|.. .-|--.---+.+.|+.++|+.++-.-.. ....++...|-.++..|.
T Consensus 664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~d~~~A~~Yc~~~y~~~~~~~~~y~~lL~~~l 743 (877)
T KOG2063|consen 664 DFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELDDIDAAESYCLPQYESDKTNKEIYLTLLRIYL 743 (877)
T ss_pred HHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhcchhHHHHHHHHhccCCCcccHHHHHHHHHHh
Confidence 121 12333321 1222222223378888888887665432 123446777888887776
Q ss_pred HH
Q 042756 306 TI 307 (425)
Q Consensus 306 ~~ 307 (425)
..
T Consensus 744 ~~ 745 (877)
T KOG2063|consen 744 NP 745 (877)
T ss_pred cc
Confidence 54
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=30.90 E-value=2.1e+02 Score=20.87 Aligned_cols=65 Identities=8% Similarity=0.052 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 208 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
+-++++.+.++|+- +......+-.+-...|+.+.|.++++.+. +| |+ .|...++++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~~--aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--EG--WFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--Cc--HHHHHHHHHHHcCchhhh
Confidence 34455555555532 22333333333335566666677666666 43 22 466666666666654444
No 378
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=30.85 E-value=41 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=17.2
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCH
Q 042756 202 MGQPHEAENLIEEMRVKG-LEPSG 224 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g-~~p~~ 224 (425)
.-+++.|+..|.+++..| ++|+.
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhh
Confidence 348889999999998875 55544
No 379
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=30.63 E-value=5e+02 Score=25.09 Aligned_cols=251 Identities=12% Similarity=0.019 Sum_probs=138.2
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHh--cCChHHHHHHHHhhhCCCCC----CCch---------hhhHHHH
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVA--SSPQFIALNALSHLLSPDTT----HPRL---------SSLAFPL 97 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~--~~~~~~a~~~~~~~l~~~~~----~~~~---------~~~a~~l 97 (425)
.|+-..|.++=.+-.+.+.-|....-.|+.+=.. .|+.+.+.+-|+.|+..-.. ..+. .+.|.+.
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4466677776666554466676666666655443 58888888888888653110 0011 2222222
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc---CCcccHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH---DSKRGFDDTYAR 174 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~---g~~~~~~~~~~~ 174 (425)
-++--.. -+--.......+...|..|+++.|+++++.-.+............-..|+.+-... .+. ..+...
T Consensus 177 Ae~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp---~~Ar~~ 251 (531)
T COG3898 177 AERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP---ASARDD 251 (531)
T ss_pred HHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh---HHHHHH
Confidence 2222111 11223455679999999999999999999877643332211111223344443221 121 122222
Q ss_pred HHHHhhcCCCCccChhH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-----HHHHHHHH
Q 042756 175 LNQLVNSSSSVYVKRQA-LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL-----EDMERIVN 248 (425)
Q Consensus 175 ~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~-----~~a~~~~~ 248 (425)
..+..+ ..||-.. --.--.++.+.|++.++-.+++.+-+..-.|++. .+..+.+.|+- +.+.+ ++
T Consensus 252 A~~a~K----L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta~dRlkRa~~-L~ 322 (531)
T COG3898 252 ALEANK----LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTALDRLKRAKK-LE 322 (531)
T ss_pred HHHHhh----cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcHHHHHHHHHH-HH
Confidence 222222 3344222 2223467889999999999999998865555543 23345566662 22222 23
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 249 QMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 249 ~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
.|+.+ +...--++..+-...|++..|..--+... ...|....|..|-+.
T Consensus 323 slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~--r~~pres~~lLlAdI 371 (531)
T COG3898 323 SLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAA--REAPRESAYLLLADI 371 (531)
T ss_pred hcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHh--hhCchhhHHHHHHHH
Confidence 33332 45566667777777888766654433332 236777777766654
No 380
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.40 E-value=2.8e+02 Score=22.02 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=37.4
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGS 143 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~ 143 (425)
-+...-.-+ +.|++.+...-+.+|-+.+++..|..+|+-.+.+.+.
T Consensus 71 glN~l~~yD-lVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~ 116 (149)
T KOG4077|consen 71 GLNNLFDYD-LVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGA 116 (149)
T ss_pred HHHhhhccc-cCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhccc
Confidence 344444556 5599999999999999999999999999998876543
No 381
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=30.32 E-value=2.6e+02 Score=23.66 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 276 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
++|.+.|++... ..|+..+|+.-+....+...+...+
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~kap~lh~e~ 133 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAAKAPELHMEI 133 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHHhhHHHHHHH
Confidence 334444444333 3677777777777776655544443
No 382
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=30.30 E-value=74 Score=21.74 Aligned_cols=33 Identities=6% Similarity=0.058 Sum_probs=16.3
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 219 (425)
|+...++-++..+++..-+++++..+.+....|
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g 38 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG 38 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455555555555555555555555555544
No 383
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=30.17 E-value=4.7e+02 Score=24.57 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 175 LNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 175 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+-+...+...+..|..-+|.|..+ +..++++-.+..+...+. |-.--...+-..-.-||+-||.+.|.+.+..-.+.
T Consensus 56 ~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~k 133 (393)
T KOG0687|consen 56 LYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEK 133 (393)
T ss_pred HHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q ss_pred ----CCCcCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHH
Q 042756 254 ----GTRVDTVCSNMVLSSYGDHNEL-SRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 254 ----g~~~~~~~yn~li~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~ 295 (425)
|.+.|++-+-+=+.-+....++ .+-.+..+.+.+.|...+..
T Consensus 134 tvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr 180 (393)
T KOG0687|consen 134 TVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR 180 (393)
T ss_pred HhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh
No 384
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.35 E-value=1.2e+02 Score=21.15 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=19.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042756 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 235 (425)
.|+.+++.+++++....|..|.......+..+.-
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~ 47 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAME 47 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4566666666666666666665555555544443
No 385
>COG0819 TenA Putative transcription activator [Transcription]
Probab=29.19 E-value=3.9e+02 Score=23.37 Aligned_cols=101 Identities=7% Similarity=0.002 Sum_probs=56.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHH-----------HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDM-----------ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 215 m~~~g~~p~~~ty~~ll~~~~~~g~~~~a-----------~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
+.+....|....|+.-|...+..|++.+. .++...+.+.+......-|-..|+.|+...-.+.+..+.+
T Consensus 100 ~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ef~~~v~~~~~ 179 (218)
T COG0819 100 LLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASEEFQEAVEELEA 179 (218)
T ss_pred HHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444556667777777777777765442 2222333333433456779999999876443332333322
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 042756 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315 (425)
Q Consensus 284 ~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~ 315 (425)
.+.+.+-.-+..-+.-|.+.+...-.++...+
T Consensus 180 ~ld~~~~~~~~~~~~~l~~iF~~ss~~E~~Fw 211 (218)
T COG0819 180 LLDSLAENSSEEELEKLKQIFLTASRFELAFW 211 (218)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333223355567777777777666666544
No 386
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=29.16 E-value=4.1e+02 Score=24.69 Aligned_cols=20 Identities=15% Similarity=0.355 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCChhHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAEN 210 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~ 210 (425)
+|.-|+.+++..|+.+-.+-
T Consensus 323 ~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred hhhHHHHHHhcCChHHHHHH
Confidence 77777777777777765543
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.15 E-value=2.3e+02 Score=20.67 Aligned_cols=41 Identities=7% Similarity=-0.121 Sum_probs=24.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDS-GIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~-g~~pd~~t~~~ll~~~~~ 306 (425)
.......|+.++|.+.+++.++. .-.-|..+....+..++.
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 34455678888888888886531 112355565555555443
No 388
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=29.05 E-value=2.2e+02 Score=20.71 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+..+++.+.+.++++.+. +. ..-++....++|.++++.+..+|. ..|.++.+++-..|.
T Consensus 16 v~~ild~L~~~gvlt~~~--~e---~I~~~~t~~~qa~~Lld~L~trG~-------~Af~~F~~aL~~~~~ 74 (86)
T cd08323 16 TSYIMDHMISDGVLTLDE--EE---KVKSKATQKEKAVMLINMILTKDN-------HAYVSFYNALLHEGY 74 (86)
T ss_pred HHHHHHHHHhcCCCCHHH--HH---HHHcCCChHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhcCC
Confidence 455777777777664443 22 222355667888888888776532 156777777766553
No 389
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=28.63 E-value=99 Score=21.91 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=22.6
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH---hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTV---CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
.+...+..|+.+ +++.+.+.|..++.. -++.|.. .+..|+.+ +++-+.+.|..|+
T Consensus 29 ~l~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 29 ALHYAAENGNLE----IVKLLLENGADINSQDKNGNTALHY-AAENGNLE----IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTTHH----HHHHHHHTTTCTT-BSTTSSBHHHH-HHHTTHHH----HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCHH----HHHHHHHhcccccccCCCCCCHHHH-HHHcCCHH----HHHHHHHcCCCCC
Confidence 333444555543 333333455444432 2333333 34444433 3344445555554
No 390
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=28.56 E-value=1.7e+02 Score=22.14 Aligned_cols=43 Identities=23% Similarity=0.114 Sum_probs=19.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 238 (425)
+..+...+..-.|.++++++.+.+..++..|.--.|+.+...|
T Consensus 7 l~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 7 LEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred HHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 3333333444445555555555444444444333344444444
No 391
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=28.42 E-value=1.4e+02 Score=19.42 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=18.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC 229 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ 229 (425)
--++.+.|++++|.+..+.+.+ +.|+..-...
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 3456677777777777777776 4565444333
No 392
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.13 E-value=3.9e+02 Score=23.01 Aligned_cols=97 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHhcCChHHHHHHHHhhhCCCCC----------------CCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHh
Q 042756 60 LISKFVASSPQFIALNALSHLLSPDTT----------------HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDK 123 (425)
Q Consensus 60 ll~~~~~~~~~~~a~~~~~~~l~~~~~----------------~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~ 123 (425)
+-+.+..+++.+.|..-+...+..... ..+..|+|++.++.....+ |.+.....--..+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHH
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK 161 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~ 161 (425)
.|+-++|+.-|.+-.+.. .++....+-..-++.+..
T Consensus 172 kg~k~~Ar~ay~kAl~~~--~s~~~~~~lqmKLn~L~~ 207 (207)
T COG2976 172 KGDKQEARAAYEKALESD--ASPAAREILQMKLNNLSG 207 (207)
T ss_pred cCchHHHHHHHHHHHHcc--CChHHHHHHHhHHHhcCC
No 393
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=27.26 E-value=5.3e+02 Score=24.25 Aligned_cols=49 Identities=6% Similarity=-0.045 Sum_probs=25.8
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETL 138 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~ 138 (425)
++.+|.+.|+++.+.-.+.---.+...+|.++.....+.++..++.+..
T Consensus 290 rlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 290 RLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5666777777654432111111234456666666666666655555544
No 394
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=27.22 E-value=2.6e+02 Score=23.26 Aligned_cols=65 Identities=2% Similarity=-0.125 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 042756 211 LIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276 (425)
Q Consensus 211 ~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~ 276 (425)
+-+.++..|++++..-. .++..+...++.-.|.++++.+.+.+..++..|----|..+...|-+.
T Consensus 13 ~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 13 AEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 34446677888776654 445555556777889999999999887777666555667777777664
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=27.17 E-value=1.1e+02 Score=16.31 Aligned_cols=28 Identities=0% Similarity=-0.033 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLIS 62 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~ 62 (425)
..+.|.++|+.+....+-+...|...+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 4567888888887765556666665554
No 396
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=26.96 E-value=3.5e+02 Score=22.11 Aligned_cols=67 Identities=10% Similarity=-0.031 Sum_probs=46.7
Q ss_pred HcCCCHHHHHHHHHHHHHCCC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 235 GRLGLLEDMERIVNQMESDGT-RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~-~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
...++.++++.+++.|.-.-- .+...++...+ +...|++++|..+|++..+.+..+ .|..-+.++|-
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~~~---p~~kAL~A~CL 88 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAGAP---PYGKALLALCL 88 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCCCc---hHHHHHHHHHH
Confidence 348899999999999986421 12344555444 468999999999999998875322 45555555554
No 397
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=26.53 E-value=5.4e+02 Score=25.36 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKG 219 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 219 (425)
++.+++-+.-+.|+-+..+.++++.-..|
T Consensus 545 VkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 545 VKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 44555555555555555555555544444
No 398
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=26.15 E-value=3.8e+02 Score=23.09 Aligned_cols=64 Identities=6% Similarity=-0.196 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 224 ~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
....+.++..|.-.||++.|.+.|.-+....-..=...|+.=+..+.+.+.-....+.|+.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~ 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHH
No 399
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=25.73 E-value=9.8e+02 Score=26.84 Aligned_cols=110 Identities=14% Similarity=0.033 Sum_probs=54.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHh----cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC----------CC------
Q 042756 29 QCLTARLTKQGQRFLSSLALA----VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT----------HP------ 88 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~----~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~----------~~------ 88 (425)
..+.+.++.+|.++-..-+-. ...+...+-.-+.++.+.-+...-++.|..-+..... ..
T Consensus 686 ~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~k~~~~~ 765 (1265)
T KOG1920|consen 686 TLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSGKQVYMS 765 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhccccccccceeEEe
Confidence 334444555555443333222 3334455555555666654444444444443332111 00
Q ss_pred --chhhhHHHHHHHhhhcC-CCccCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 042756 89 --RLSSLAFPLYMRITEES-WFQWNPKLVAEIIAFLDKQG--QREEAETLILETLS 139 (425)
Q Consensus 89 --~~~~~a~~lf~~m~~~~-~~~~~~~~~~~ll~~~~~~g--~~~~A~~l~~~m~~ 139 (425)
..-.+...+++.+.+.- ...|+ .-.-.+|.+|.+.+ .++.|++...+...
T Consensus 766 r~~~d~kv~~vc~~vr~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 766 RDPYDNKVNSVCDAVRNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred ccchhhHHHHHHHHHHHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 01233444444443321 12244 33446888999988 78888888877764
No 400
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=25.70 E-value=1.8e+02 Score=22.03 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=16.7
Q ss_pred CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 042756 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG 219 (425)
Q Consensus 185 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 219 (425)
+.||...|-++- -.+.|-.+++..-+.+|..+|
T Consensus 66 ~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 66 CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG 98 (115)
T ss_pred CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence 455555555442 234455555555555555544
No 401
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=25.63 E-value=4.3e+02 Score=22.68 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=23.6
Q ss_pred HHHHHHhhHHHHHHHHHHhHHh---cCCCHHHHHHHHH-HHHhcC
Q 042756 28 VQCLTARLTKQGQRFLSSLALA---VTRDSKAASRLIS-KFVASS 68 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~---~~~d~~~~~~ll~-~~~~~~ 68 (425)
...+-+|+++.|.+-++.+.+. ++.-...|+.+.. +++..+
T Consensus 37 I~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a 81 (204)
T COG2178 37 IFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTA 81 (204)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcch
Confidence 3445566777777776666655 3434555565655 444443
No 402
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.35 E-value=7.3e+02 Score=25.24 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=97.5
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh-------cCCCCccChhHHHHHHHHH
Q 042756 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN-------SSSSVYVKRQALKSMISGL 199 (425)
Q Consensus 127 ~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~-------~~~~~~p~~~~~~~li~~~ 199 (425)
...|.++++...+.+.... ...-.++...+..|.....+.++..+....+ .+. ....+-+-.+|
T Consensus 228 ~~~a~~~~~~~a~~g~~~a----~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~-----~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEA----QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGL-----PPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhhcchHH----HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcC-----CccccHHHHHH
Confidence 4578888888776644321 1223344444445555558888888888766 331 12677788888
Q ss_pred HhcC-----ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH--h
Q 042756 200 CEMG-----QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR-LGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG--D 271 (425)
Q Consensus 200 ~~~g-----~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~--~ 271 (425)
.+.. +.+.|+.+|.+--+.|. |+...+-..+.-... ..+...|.++|..--..|.. +..-+-+++-... .
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGV 376 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCc
Confidence 7754 56779999999988874 455554444444444 45788999999999988853 3333333322222 3
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 042756 272 HNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~~~g 289 (425)
..+...|..+|++..+.|
T Consensus 377 ~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCCHHHHHHHHHHHHHcc
Confidence 346788888888888877
No 403
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=25.30 E-value=4.9e+02 Score=25.69 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLS 139 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~ 139 (425)
.+++-.++++.+.+.+.. | ....-|.+|.+.+++++|..-+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g~a--d--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEGGA--D--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHccCC--C--ccceeeecccccccHHHHHHHHHhhhh
Confidence 678888888888777522 2 222358999999999999999988765
No 404
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=24.61 E-value=4.4e+02 Score=22.38 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhcCCCCccCh-hHHHHHHHHHHhcC----C-------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKR-QALKSMISGLCEMG----Q-------PHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g----~-------~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 235 (425)
++++...+++... +.|+- .++..+-.+|...+ + +++|.+.|++..+ ..|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~----I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~ 124 (186)
T PF06552_consen 51 IEDAISKFEEALK----INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA 124 (186)
T ss_dssp HHHHHHHHHHHHH----H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence 3444445544443 33442 35555555555433 2 3444444444443 5677788887777653
Q ss_pred cCCCHHHHHHHHHHHHHCCC
Q 042756 236 RLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~ 255 (425)
.|-+++.++.+.+.
T Consensus 125 ------kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 125 ------KAPELHMEIHKQGL 138 (186)
T ss_dssp ------THHHHHHHHHHSSS
T ss_pred ------hhHHHHHHHHHHHh
Confidence 35666666666544
No 405
>cd08810 CARD_BCL10 Caspase activation and recruitment domain of B-cell lymphoma 10. Caspase activation and recruitment domain (CARD) similar to that found in BCL10 (B-cell lymphoma 10). BCL10 and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1) are the integral components of CBM signalosomes. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells) and with CARMA1 to form L-CBM (CBM complex in lymphoid immune cells), to mediate activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. Both CARMA1 and CARD9 associate with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by asso
Probab=24.21 E-value=2.8e+02 Score=20.06 Aligned_cols=58 Identities=12% Similarity=0.012 Sum_probs=38.0
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+-++++.+.+.++++++. .=...+...+.+.|..+++.+. +|. ..|.+++.++...+.
T Consensus 18 ~~~l~d~L~s~~ILt~~d-----~EeI~~~~t~~~qa~~LLdiL~-rGp-------~Af~~F~esL~~~~~ 75 (84)
T cd08810 18 ADRHFDYLRSKRILTRDD-----CEEISCRTTSRKQAGKLLDILA-ENP-------KGLDALIESIRRERT 75 (84)
T ss_pred HHHHHHHHHHcCCCCHHH-----HHHHhccCCcHHHHHHHHHHHh-hCc-------hHHHHHHHHHHHccc
Confidence 455788888888665543 3333446677888888888876 421 157778888776553
No 406
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=24.13 E-value=6.6e+02 Score=24.26 Aligned_cols=183 Identities=13% Similarity=0.054 Sum_probs=110.5
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhhcCCC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSS 184 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~~~~~~~~~~~~~~~~~~ 184 (425)
-+..++..++..|...++|+.--+.+.-+.++.+..... -..++.-+.. ..+.+.-....+.++......-.
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgqlk~a----i~~Mvq~~~~y~~~~~d~~~k~~li~tLr~VtegkIy 125 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQLKQA----IQSMVQQAMTYIDGTPDLETKIKLIETLRTVTEGKIY 125 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHhccCCCCchhHHHHHHHHHHhhcCceE
Confidence 466677778888888888887666666655544433322 2334433322 22223334445555544333311
Q ss_pred CccCh-hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHcCCCHHHHHHHHHHHH
Q 042756 185 VYVKR-QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI------------IYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 185 ~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l------------l~~~~~~g~~~~a~~~~~~m~ 251 (425)
+..-. ..=..|..-+-..|++++|..+..+.. +.||.+| +..|...+|+-.|--+-..+.
T Consensus 126 vEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~ 198 (439)
T KOG1498|consen 126 VEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKIN 198 (439)
T ss_pred EeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 11111 122345566777899999999988763 4677776 566788888888766666554
Q ss_pred HCCC-CcC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHH
Q 042756 252 SDGT-RVD-----TVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLN 302 (425)
Q Consensus 252 ~~g~-~~~-----~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~ 302 (425)
..-+ .|| ..-|+.||+.....+.+=.+.+.|+..-..| ++-|..-|.-.+.
T Consensus 199 ~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~ 256 (439)
T KOG1498|consen 199 KKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLR 256 (439)
T ss_pred HHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhh
Confidence 4322 233 3568899999989999999999999886544 3444444544444
No 407
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=23.94 E-value=3.1e+02 Score=22.14 Aligned_cols=61 Identities=15% Similarity=0.161 Sum_probs=40.7
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 244 ~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
.++.+.+++.|++++ .-=-.++..+...++.-.|.++|+++.+.+-.-+..|.--.++.+.
T Consensus 6 ~~~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~ 66 (145)
T COG0735 6 EDAIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLE 66 (145)
T ss_pred HHHHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHH
Confidence 345566778888755 3355677788877777889999999998765555554444444443
No 408
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=23.78 E-value=2.3e+02 Score=24.73 Aligned_cols=83 Identities=14% Similarity=0.169 Sum_probs=63.1
Q ss_pred ChhHHHHHHHHHHHcCCC-------CCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHHCCCCc-CHHhHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLE-------PSGFEYKCIIYGYGRLG---------LLEDMERIVNQMESDGTRV-DTVCSNMVL 266 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~-------p~~~ty~~ll~~~~~~g---------~~~~a~~~~~~m~~~g~~~-~~~~yn~li 266 (425)
..|.|..+...|--..++ -...-|..+-++|++.| +++.-.++++...+.|++. =.+.|.++|
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 457888888888654322 14557888899999987 5677888888888888753 467899999
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 042756 267 SSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~ 286 (425)
+----.-+++++.++|..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87766678899999988775
No 409
>PLN03025 replication factor C subunit; Provisional
Probab=23.74 E-value=5.9e+02 Score=23.57 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=43.5
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C-C----------CcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD-G-T----------RVDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 217 ~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-g-~----------~~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
+.|+..+......++.. ..||+..+...++..... + + .+....-..++++. ..+++++|...+.+
T Consensus 173 ~egi~i~~~~l~~i~~~--~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~-~~~~~~~a~~~l~~ 249 (319)
T PLN03025 173 AEKVPYVPEGLEAIIFT--ADGDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNC-LKGKFDDACDGLKQ 249 (319)
T ss_pred HcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 34555555555555543 246666666665533211 1 0 12233334445444 35789999999999
Q ss_pred HHhCCCCCCH
Q 042756 285 MKDSGIPFSV 294 (425)
Q Consensus 285 M~~~g~~pd~ 294 (425)
|...|+.|..
T Consensus 250 ll~~g~~~~~ 259 (319)
T PLN03025 250 LYDLGYSPTD 259 (319)
T ss_pred HHHcCCCHHH
Confidence 9999988854
No 410
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=23.65 E-value=3.5e+02 Score=21.20 Aligned_cols=70 Identities=9% Similarity=-0.083 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
...|..+++.+...|-.|+ .-...+.....+|+...+....-....|+.++......|+. .+..+|..
T Consensus 47 ~~HA~~~~~~l~~l~g~~~-----------~~~~~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~-~~~~~f~~ 114 (134)
T cd01041 47 KEHAKGHFKLLKGLGGGDT-----------GPPIGIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFK-EAARSFEA 114 (134)
T ss_pred HHHHHHHHHHHhcCCCCCc-----------CCCCCcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCH-HHHHHHHH
Confidence 3567777777777776666 11224555666676666543322457888888888888886 45566665
Q ss_pred HH
Q 042756 285 MK 286 (425)
Q Consensus 285 M~ 286 (425)
+.
T Consensus 115 i~ 116 (134)
T cd01041 115 IA 116 (134)
T ss_pred HH
Confidence 54
No 411
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=23.55 E-value=7.1e+02 Score=24.44 Aligned_cols=89 Identities=10% Similarity=-0.001 Sum_probs=61.1
Q ss_pred HcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH--------HHhcCCHHHHHHHHHHHHhC
Q 042756 217 VKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS--------YGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 217 ~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~--------~~~~g~~~~A~~l~~~M~~~ 288 (425)
...+.||.++.|-+-+.++..-..+....+|+...+.+ .|-.+-+-+||-. -.+...-++|+++++.|..+
T Consensus 176 tkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqa-DPF~vffLaliiLiNake~ILq~~sdsKEe~ikfLenmp~~ 254 (669)
T KOG3636|consen 176 TKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQA-DPFLVFFLALIILINAKEEILQVKSDSKEEAIKFLENMPAQ 254 (669)
T ss_pred ccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CceehHHHHHHHhcccHHHHhhhccccHHHHHHHHHcCchh
Confidence 45689999999999999998888999999999888865 2433333333311 13455678999999999754
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 042756 289 GIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 289 g~~pd~~t~~~ll~~~~~ 306 (425)
=-.-|+.-|-+|..-|+.
T Consensus 255 L~~eDvpDffsLAqyY~~ 272 (669)
T KOG3636|consen 255 LSVEDVPDFFSLAQYYSD 272 (669)
T ss_pred cccccchhHHHHHHHHhh
Confidence 223355555556655543
No 412
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=23.35 E-value=1.9e+02 Score=21.99 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=32.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSML 311 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~ 311 (425)
+++.+...+..-.|.++++.+.+.+..++..|.--.|+.+...|-+.
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 45555555666678888888887776677777777777777776653
No 413
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=22.48 E-value=6.4e+02 Score=23.57 Aligned_cols=93 Identities=9% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CcCHHhHHHHH-----------HHHHhcCCHH
Q 042756 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT--RVDTVCSNMVL-----------SSYGDHNELS 276 (425)
Q Consensus 210 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~~~~yn~li-----------~~~~~~g~~~ 276 (425)
.+-.+..+.|++.+......++..+. |+.-.+..-++.+.-... ..+......++ .-+...|++.
T Consensus 148 ~i~~~~~~~~l~i~~~a~~~L~~~~~--~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~ 225 (334)
T COG1466 148 WIKKRAKELGLKIDQEAIQLLLEALG--GNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVK 225 (334)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhC--CcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHH
Confidence 34455556677777777777766655 555555555554432110 22222222222 2334578999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 277 RMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 277 ~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
+|..+++++...|..| .....++.+-+.
T Consensus 226 ~a~~~l~~L~~~ge~p-~~il~~l~~~f~ 253 (334)
T COG1466 226 KALRLLRDLLLEGEEP-LKLLAALTRQFR 253 (334)
T ss_pred HHHHHHHHHHHcCCcH-HHHHHHHHHHHH
Confidence 9999999999988765 455555555444
No 414
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.41 E-value=6e+02 Score=23.18 Aligned_cols=193 Identities=9% Similarity=0.073 Sum_probs=111.2
Q ss_pred hhhhHHHHHHHhhhc--CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---hcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 90 LSSLAFPLYMRITEE--SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLS---KLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~--~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~---~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
..++|+.-|....+- ..-.|.-...--+|....+.|++++..+.|.++.. .......+ .-+.|++++..+-...
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS-EKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS-EKSINSILDYISTSKN 120 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHhhhhh
Confidence 344555555554322 22456777777889999999999999998888753 11111111 1245788887776666
Q ss_pred cccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-----------CCHHHHHHHHHH
Q 042756 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE-----------PSGFEYKCIIYG 233 (425)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----------p~~~ty~~ll~~ 233 (425)
.+-+.+.++.-.+.......-..--.|-.-+-..|...+++.+..++++++..+--. --...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 555555544433333221111011114455667777888888888888888753110 113467777788
Q ss_pred HHcCCCHHHHHHHHHHHH--HCCCCcCHHhHHHHHHHH-----HhcCCHHHHHH-HHHHH
Q 042756 234 YGRLGLLEDMERIVNQME--SDGTRVDTVCSNMVLSSY-----GDHNELSRMVL-WLQKM 285 (425)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~--~~g~~~~~~~yn~li~~~-----~~~g~~~~A~~-l~~~M 285 (425)
|....+-+.-..+++... +..| |.+.... +|+-| .+.|++++|.. +|+..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAI-PHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAI-PHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccC-CchHHHh-HHHHcCCccccccchHHHHHhHHHHHH
Confidence 888887777777777543 2222 4443333 33333 45677777643 44433
No 415
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=22.07 E-value=5.2e+02 Score=22.29 Aligned_cols=84 Identities=10% Similarity=0.159 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--------------C
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT--------------R 256 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~--------------~ 256 (425)
.|...-.+-++.-+-+++.+.|- ..+=.++|..|-+.-+|.++.++++.|.+..+ .
T Consensus 109 PFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~a 178 (233)
T PF14669_consen 109 PFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLA 178 (233)
T ss_pred CHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccC
Confidence 77777777777766666554432 23445677888899999999999999877433 2
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQK 284 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~ 284 (425)
+--..-|.-...|.+.|.+|.|+.++++
T Consensus 179 srCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 179 SRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred chhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3446778888999999999999999884
No 416
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.06 E-value=9.7e+02 Score=25.47 Aligned_cols=42 Identities=7% Similarity=-0.001 Sum_probs=25.9
Q ss_pred cchhHHHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHH
Q 042756 22 QQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISK 63 (425)
Q Consensus 22 ~~~~~~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~ 63 (425)
.+.+++|..++...+..-..-|....+.++++...-...+++
T Consensus 452 rL~p~vYemvLve~L~~~~~~F~e~i~~Wp~~Lys~l~iisa 493 (846)
T KOG2066|consen 452 RLKPLVYEMVLVEFLASDVKGFLELIKEWPGHLYSVLTIISA 493 (846)
T ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhhHHHhh
Confidence 445567888777777766666666666555555544444433
No 417
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=21.79 E-value=2.2e+02 Score=21.86 Aligned_cols=45 Identities=18% Similarity=0.061 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL 237 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~ 237 (425)
..++..+...+..-.|.++++.+.+.+...+..|.=--|+.+.+.
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~ 55 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEA 55 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHC
Confidence 345555555555666666666666655555544333333333333
No 418
>PF04637 Herpes_pp85: Herpesvirus phosphoprotein 85 (HHV6-7 U14/HCMV UL25); InterPro: IPR006731 This family includes UL25 proteins from human cytomelagovirus (HCMV), as well as U14 proteins from the human herpesviruses HHV-6 and HHV-7. These 85 kDa phosphoproteins appear to act as structural antigens, but their precise function is otherwise unknown.
Probab=21.59 E-value=7.8e+02 Score=24.70 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=70.4
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhHHh-----cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHH
Q 042756 24 RLTLVQCLTARLTKQGQRFLSSLALA-----VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLY 98 (425)
Q Consensus 24 ~~~~~~~l~~~~~~~a~~~~~~m~~~-----~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf 98 (425)
++.+--++..++...+...+..|... -.|+..-...=+..+|+..+.......+...+...+...+.+..++.-.
T Consensus 66 ~pVi~~aV~~Nyy~ngk~~l~~m~~~l~~~~~~~~~~rl~~~l~~L~~~~~~~~~~~~l~~~l~~~~vt~g~~~~~L~~l 145 (501)
T PF04637_consen 66 RPVIRLAVLANYYYNGKGKLRHMRARLRSLMNGPTMRRLDRGLRRLCRALQGSDNPLALHFLLGRLDVTDGQYKQCLRRL 145 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcccCCCCHHHHHHHcccCCCChHHHHHHHHHH
Confidence 33456677778888888888888777 3455555555555655565666666666677777667777777777776
Q ss_pred HHhhhcCCCccCHHH--HHHHHHHHH---hcCC--hhHHHHHHHHHH
Q 042756 99 MRITEESWFQWNPKL--VAEIIAFLD---KQGQ--REEAETLILETL 138 (425)
Q Consensus 99 ~~m~~~~~~~~~~~~--~~~ll~~~~---~~g~--~~~A~~l~~~m~ 138 (425)
+++.++-...+++.+ +...+..|. +... ..+|..+|.+=.
T Consensus 146 ~~~l~~~~~~~~~~~~~~y~~Lr~yNlLf~~p~ytt~eAv~lY~~NL 192 (501)
T PF04637_consen 146 YDLLRSRDLRPSPDTREIYETLRAYNLLFKPPRYTTREAVDLYSENL 192 (501)
T ss_pred HHHHHhcCCCCChhHHHHHHHHHhccccccCCCCCCHHHHHHHHHHH
Confidence 665544335555543 222333332 2222 457888887644
No 419
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=6.5e+02 Score=23.26 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC--CccChhHHHHHHH---HHHhcCChhHHHHHHHHHHHcCCCCC
Q 042756 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS--VYVKRQALKSMIS---GLCEMGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 149 ~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
...+..+-..|++.++. +..++.+.+.+..... .+.| ++-+.|+ .|....-.++.+++.+.|.++|.-.+
T Consensus 115 ~ea~~n~aeyY~qi~D~---~ng~~~~~~~~~~a~stg~KiD--v~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWe 189 (412)
T COG5187 115 SEADRNIAEYYCQIMDI---QNGFEWMRRLMRDAMSTGLKID--VFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWE 189 (412)
T ss_pred HHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHhcccchh--hHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHH
Confidence 34567788889999884 4455555544433211 2233 3333332 23344456788888888888875433
Q ss_pred H----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 224 G----FEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 224 ~----~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
. .+|--+..... .++++|-.++-+..
T Consensus 190 RrNRyK~Y~Gi~~m~~--RnFkeAa~Ll~d~l 219 (412)
T COG5187 190 RRNRYKVYKGIFKMMR--RNFKEAAILLSDIL 219 (412)
T ss_pred hhhhHHHHHHHHHHHH--HhhHHHHHHHHHHh
Confidence 2 25555543332 35777777766654
No 420
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.40 E-value=7.2e+02 Score=23.75 Aligned_cols=140 Identities=8% Similarity=0.011 Sum_probs=83.5
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHH-------HHHHHHHHHHHhcCCcccHHHHH-HHHHHHhhcCCCCccChhHHHH
Q 042756 123 KQGQREEAETLILETLSKLGSRERELV-------LFYCNLIDSFCKHDSKRGFDDTY-ARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~-------~~y~~li~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
..+++++|..+|....-. |... .-+.-++-.+.-.|.+..+.+.- ....+. ..|-...|.-
T Consensus 195 glk~fe~Al~~~e~~v~~-----Pa~~vs~~hlEaYkkylLvsLI~~GK~~ql~k~ts~~~~r~------~K~ms~pY~e 263 (422)
T KOG2582|consen 195 GLKRFERALYLLEICVTT-----PAMAVSHIHLEAYKKYLLVSLILTGKVFQLPKNTSQNAGRF------FKPMSNPYHE 263 (422)
T ss_pred ccccHHHHHHHHHHHHhc-----chhHHHHHHHHHHHHHHHHHhhhcCceeeccccchhhhHHh------cccCCchHHH
Confidence 457899999999886532 1111 11222333444456643333222 111111 1122227888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH----HHHH
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL----SSYG 270 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li----~~~~ 270 (425)
+.++|.+...-+ ...+..+-. ..+-|.++..-|......|.++.+..=+.||.+|= ...+
T Consensus 264 f~~~Y~~~~~~e-Lr~lVk~~~---------------~rF~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~v 327 (422)
T KOG2582|consen 264 FLNVYLKDSSTE-LRTLVKKHS---------------ERFTKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRV 327 (422)
T ss_pred HHHHHhcCCcHH-HHHHHHHHH---------------HHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 888888765433 222222111 24567788888999999999888877788888874 4445
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 042756 271 DHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g 289 (425)
+.+..++|.+..-.|.+.|
T Consensus 328 QLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 328 QLASAQEVEKYILQMIEDG 346 (422)
T ss_pred HhcchHHHHHHHHHHhccC
Confidence 6678889999888888776
No 421
>PRK09462 fur ferric uptake regulator; Provisional
Probab=21.38 E-value=4.4e+02 Score=21.18 Aligned_cols=61 Identities=16% Similarity=0.151 Sum_probs=38.3
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 042756 249 QMESDGTRVDTVCSNMVLSSYGDH-NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 249 ~m~~~g~~~~~~~yn~li~~~~~~-g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~ 310 (425)
.+.+.|++++. -=..++..+... +..-.|.++++.+.+.+...+..|.--.|+.+...|-+
T Consensus 7 ~l~~~glr~T~-qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTL-PRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34566766443 334445555543 44667888888888777666777766667777776665
No 422
>PRK11906 transcriptional regulator; Provisional
Probab=21.17 E-value=8.1e+02 Score=24.22 Aligned_cols=114 Identities=10% Similarity=0.084 Sum_probs=56.3
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
...+|.++-+.-.+-+.. |+.....+-.+..-.|+++.|..+|++...- .|+....|...--.+.-+|+ .+
T Consensus 319 ~~~~a~~~A~rAveld~~--Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----~Pn~A~~~~~~~~~~~~~G~---~~ 389 (458)
T PRK11906 319 AAQKALELLDYVSDITTV--DGKILAIMGLITGLSGQAKVSHILFEQAKIH----STDIASLYYYRALVHFHNEK---IE 389 (458)
T ss_pred HHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc----CCccHHHHHHHHHHHHHcCC---HH
Confidence 455566666665555533 6655555555556667788888888776542 22222233233333334566 45
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (425)
++.+.+.+...-.+ ........-..|..|+.. .+++|.++|-+
T Consensus 390 ~a~~~i~~alrLsP-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 390 EARICIDKSLQLEP-RRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHhccCc-hhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 55555555332221 111112333333444433 35666666544
No 423
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=21.12 E-value=3.3e+02 Score=19.76 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQG---QREEAETLILETLSKLGSRERELVLFYCNLIDSF 159 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~ 159 (425)
+.++++.+.+.++++++. .=...++.. +-++|..+++.+..+|.. .|.++..++
T Consensus 18 ~~~l~d~L~q~~VLt~~d-----~EeI~~~~t~~~r~~ka~~LLdiL~~rG~~-------Af~~F~~aL 74 (86)
T cd08785 18 PSRLTPYLRQCKVLDEQD-----EEEVLSSPRLPIRANRTGRLLDILATRGKR-------GYVAFLESL 74 (86)
T ss_pred HHHHHHHHHhcCCCCHHH-----HHHHhCCCccccHHHHHHHHHHHHHhcCcc-------hHHHHHHHH
Confidence 445777787777665543 223333433 337787877777665322 455555555
No 424
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.82 E-value=2.4e+02 Score=24.22 Aligned_cols=59 Identities=7% Similarity=0.007 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC--------------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKG--------------LEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------------~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.=-+++..|-+.-++.+..++++.|.+.. ..+--...|.....|.+.|.++.|..++++
T Consensus 134 iGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 134 IGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 44567888888889999999999887643 223445678888899999999999999883
No 425
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=20.68 E-value=6.6e+02 Score=22.98 Aligned_cols=153 Identities=11% Similarity=0.170 Sum_probs=84.3
Q ss_pred HHHHHHhcCC---hhHHHHHHHHHHHhcCC----CchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 117 IIAFLDKQGQ---REEAETLILETLSKLGS----RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 117 ll~~~~~~g~---~~~A~~l~~~m~~~~~~----~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++...| |+ .+.|.+.|++....... .+++ ....++....+.|+. +.++.+.+..... ++.
T Consensus 135 ~~~~a~--~~~~~~~~a~~~~~~~~~~~~~~~~~i~~d---lr~~v~~~~~~~g~~----~~~~~l~~~~~~~----~~~ 201 (324)
T PF11838_consen 135 LLSLAC--GDPECVAEARELFKAWLDGNDSPESSIPPD---LRWAVYCAGVRNGDE----EEWDFLWELYKNS----TSP 201 (324)
T ss_dssp HHHHHH--T-HHHHHHHHHHHHHHHHTTT-TTSTS-HH---HHHHHHHHHTTS--H----HHHHHHHHHHHTT----STH
T ss_pred HHHHhc--cchhHHHHHHHHHHHHhcCCcccccccchH---HHHHHHHHHHHHhhH----hhHHHHHHHHhcc----CCH
Confidence 344444 44 66888889888875332 2333 345677777788773 3355555554433 234
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCH--HHHHHHHH----HHHHCCCCcCHHhH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYGRLGLL--EDMERIVN----QMESDGTRVDTVCS 262 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~~~g~~--~~a~~~~~----~m~~~g~~~~~~~y 262 (425)
...+.++.+.+...+.+...++++.....+ +++. . ...++.++...+.. +.+.+.+. .+.+. +..+....
T Consensus 202 ~~k~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~-d-~~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~-~~~~~~~~ 278 (324)
T PF11838_consen 202 EEKRRLLSALACSPDPELLKRLLDLLLSNDKVRSQ-D-IRYVLAGLASSNPVGRDLAWEFFKENWDAIIKK-FGTNSSAL 278 (324)
T ss_dssp HHHHHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TT-T-HHHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCH-C-TTSHCC
T ss_pred HHHHHHHHhhhccCCHHHHHHHHHHHcCCcccccH-H-HHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH-hcCCChHH
Confidence 578999999999999999999999998865 4443 3 34444455533332 55555554 33332 22232255
Q ss_pred HHHHHHHH----hcCCHHHHHHHHHHH
Q 042756 263 NMVLSSYG----DHNELSRMVLWLQKM 285 (425)
Q Consensus 263 n~li~~~~----~~g~~~~A~~l~~~M 285 (425)
..++.++. ...+.++..++|+.-
T Consensus 279 ~~~~~~~~~~~~t~~~~~~~~~f~~~~ 305 (324)
T PF11838_consen 279 SRVIKSFAGNFSTEEQLDELEEFFEDK 305 (324)
T ss_dssp HHHHHCCCTT--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 56665543 344455555555544
No 426
>PRK09857 putative transposase; Provisional
Probab=20.65 E-value=6.7e+02 Score=23.05 Aligned_cols=96 Identities=14% Similarity=0.140 Sum_probs=60.2
Q ss_pred HHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042756 159 FCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 159 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 238 (425)
+-+..+..++.+.+..+.+..... ..++ ..+..++.-..+.++.++..++++...+. ..+.....-++..-+-..|
T Consensus 179 l~k~i~~~dl~~~~~~l~~ll~~~--~~~~-~~~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG 254 (292)
T PRK09857 179 IQKHIRQRDLMGLVEQMACLLSSG--YAND-RQIKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEG 254 (292)
T ss_pred HHHHcCcHhHHHHHHHHHHHHHhc--cCCH-HHHHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHH
Confidence 333333333555555555554433 1122 23556666666778888888888888765 3333344456666677777
Q ss_pred CHHHHHHHHHHHHHCCCCcC
Q 042756 239 LLEDMERIVNQMESDGTRVD 258 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~ 258 (425)
.-+++.++...|...|+.++
T Consensus 255 ~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 255 EQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHcCCCHH
Confidence 77888888999998888765
No 427
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.52 E-value=6.1e+02 Score=22.51 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=42.3
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHhcCC
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK---LGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
++.|...|..... .+.-....-.+-.-|.+.|++++|.++|+.+... .+..... ..+...+..++.+.|+
T Consensus 161 L~~A~~~f~~~~~---~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~-~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 161 LEKAYEQFKKYGQ---NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLL-TEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHhcc---chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHHHHHHHHhCC
Confidence 4455555555433 2234445556788889999999999999998542 2222222 2233456666666777
No 428
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=20.51 E-value=1.2e+03 Score=26.11 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=44.0
Q ss_pred cChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH--
Q 042756 187 VKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV-- 260 (425)
Q Consensus 187 p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-- 260 (425)
||...+..+..+|+. ...+++|.=+|+..-+ ..-.+.+|-.+|+|.+|..+..++... -|..
T Consensus 933 ~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~ 1000 (1265)
T KOG1920|consen 933 PDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVI 1000 (1265)
T ss_pred cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHH
Confidence 455455544444433 4555555555554321 233455666666666666666655431 1222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
+--.|+.-+...|+.-+|-++..+-
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHH
Confidence 2244555555566555555555544
No 429
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.50 E-value=9.7e+02 Score=24.87 Aligned_cols=93 Identities=10% Similarity=0.137 Sum_probs=57.0
Q ss_pred HHHHHHHH-HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC-------------CcCHHhHHHHHHHHHhc
Q 042756 207 EAENLIEE-MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT-------------RVDTVCSNMVLSSYGDH 272 (425)
Q Consensus 207 ~a~~~~~~-m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~-------------~~~~~~yn~li~~~~~~ 272 (425)
+..+.+.+ +...|+..+......++. ...|++..+..+++.....|- .++......+++++..
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~- 263 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIAFGSGQLQEAAVRQMLGSVDRSHVFRLIDALAQ- 263 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcCCCHHHHHHHHHHHHc-
Confidence 33444433 345577777777666665 345888888888776554321 1233444455666555
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 273 NELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
|+...+++++++|.+.|..|. ..+..|+..
T Consensus 264 ~d~~~al~~l~~l~~~G~~~~-~il~~l~~~ 293 (618)
T PRK14951 264 GDGRTVVETADELRLNGLSAA-STLEEMAAV 293 (618)
T ss_pred CCHHHHHHHHHHHHHcCCCHH-HHHHHHHHH
Confidence 788899999999999887653 233444433
No 430
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=20.44 E-value=9.5e+02 Score=24.75 Aligned_cols=180 Identities=7% Similarity=-0.003 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCCh
Q 042756 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFC-KHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQP 205 (425)
Q Consensus 127 ~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 205 (425)
+..|.+.++-+.+....++.....++--+...+. ...+.+.++..++.-...........-.-.+-..++..+.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Q ss_pred hHHHHHHHHHHHc----CCCCCHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHCC---CCcCHHhHHHHHHHHH--hcCCH
Q 042756 206 HEAENLIEEMRVK----GLEPSGFEYKCI-IYGYGRLGLLEDMERIVNQMESDG---TRVDTVCSNMVLSSYG--DHNEL 275 (425)
Q Consensus 206 ~~a~~~~~~m~~~----g~~p~~~ty~~l-l~~~~~~g~~~~a~~~~~~m~~~g---~~~~~~~yn~li~~~~--~~g~~ 275 (425)
. |....++..+. +..+=...|.-+ +..+...+|...|.+.++.+...- ..|-..++-.++.+.. +.+..
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Q ss_pred HHHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHHH
Q 042756 276 SRMVLWLQKMKDSGIPF---------SVRTYNSVLNSCSTI 307 (425)
Q Consensus 276 ~~A~~l~~~M~~~g~~p---------d~~t~~~ll~~~~~~ 307 (425)
+++.+.++++......+ -..+|..+++.++..
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l 236 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSL 236 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHH
No 431
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=20.31 E-value=6.9e+02 Score=23.06 Aligned_cols=66 Identities=6% Similarity=-0.136 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV---DTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 222 p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
....++..+.+.+-+.|.++.|...+..+...+... +....-.-...+-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999999999888754221 333444455666778888899998888776
No 432
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=20.20 E-value=8.9e+02 Score=24.34 Aligned_cols=85 Identities=9% Similarity=0.108 Sum_probs=48.4
Q ss_pred hHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CC----------cCHHhHHHHHHHHHhc
Q 042756 206 HEAENLIEEM-RVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--TR----------VDTVCSNMVLSSYGDH 272 (425)
Q Consensus 206 ~~a~~~~~~m-~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~----------~~~~~yn~li~~~~~~ 272 (425)
++..+.+.+. ...|+..+......++... .|++..|...++.+...+ +. +.......+++++ ..
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~~ 254 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-AQ 254 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-Hc
Confidence 3444444433 3446666666555554433 467777766666654332 11 1222334455555 45
Q ss_pred CCHHHHHHHHHHHHhCCCCCC
Q 042756 273 NELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 273 g~~~~A~~l~~~M~~~g~~pd 293 (425)
++.++|+.+++++...|..|.
T Consensus 255 ~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 255 GDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred CCHHHHHHHHHHHHHcCCCHH
Confidence 788899999999988886653
No 433
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.00 E-value=1.4e+02 Score=17.22 Aligned_cols=22 Identities=14% Similarity=0.221 Sum_probs=11.0
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHH
Q 042756 205 PHEAENLIEEMRVKGLEPSGFEYK 228 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~~~ty~ 228 (425)
+|.|..+|++... +.|+..+|.
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wi 24 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWI 24 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHH
Confidence 4555555555554 245544443
Done!