Query 042756
Match_columns 425
No_of_seqs 226 out of 2770
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 15:56:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042756.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042756hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 2.1E-34 7.2E-39 283.5 25.6 219 91-315 6-231 (501)
2 4g26_A Pentatricopeptide repea 100.0 6.5E-34 2.2E-38 280.0 13.6 187 190-407 27-222 (501)
3 2xpi_A Anaphase-promoting comp 99.9 5.7E-25 1.9E-29 222.2 21.3 376 29-422 93-543 (597)
4 2xpi_A Anaphase-promoting comp 99.9 5.8E-24 2E-28 214.8 24.5 343 31-421 161-576 (597)
5 3spa_A Mtrpol, DNA-directed RN 99.9 1E-22 3.6E-27 206.6 12.1 121 189-309 127-251 (1134)
6 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-21 7.3E-26 197.1 9.3 152 147-305 125-283 (1134)
7 1w3b_A UDP-N-acetylglucosamine 99.8 4.5E-17 1.5E-21 155.4 32.1 334 30-383 9-367 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.7 3.2E-15 1.1E-19 142.5 29.7 266 32-313 45-324 (388)
9 2y4t_A DNAJ homolog subfamily 99.7 4.4E-15 1.5E-19 144.1 30.2 294 29-383 35-357 (450)
10 2gw1_A Mitochondrial precursor 99.6 1.3E-13 4.4E-18 135.9 26.8 244 124-383 202-477 (514)
11 2y4t_A DNAJ homolog subfamily 99.6 1.1E-12 3.9E-17 127.0 31.2 253 31-301 71-370 (450)
12 3ieg_A DNAJ homolog subfamily 99.5 6.3E-12 2.1E-16 117.4 29.1 294 29-383 12-334 (359)
13 2gw1_A Mitochondrial precursor 99.5 1.4E-12 4.7E-17 128.5 25.6 322 29-383 15-443 (514)
14 3fp2_A TPR repeat-containing p 99.5 1.3E-11 4.6E-16 122.2 32.0 241 126-383 217-490 (537)
15 3hym_B Cell division cycle pro 99.5 7.7E-12 2.6E-16 115.5 26.1 251 28-313 30-289 (330)
16 4eqf_A PEX5-related protein; a 99.5 6.1E-12 2.1E-16 118.5 25.6 251 28-311 73-344 (365)
17 4eqf_A PEX5-related protein; a 99.5 1.6E-12 5.6E-17 122.5 19.8 270 53-369 64-346 (365)
18 1fch_A Peroxisomal targeting s 99.5 2.4E-12 8.4E-17 121.1 20.2 289 34-380 39-355 (368)
19 3hym_B Cell division cycle pro 99.5 3.3E-12 1.1E-16 118.0 20.5 271 51-383 19-298 (330)
20 3cv0_A Peroxisome targeting si 99.4 2.2E-11 7.6E-16 112.2 23.0 251 28-313 29-305 (327)
21 3ieg_A DNAJ homolog subfamily 99.4 3E-10 1E-14 105.8 30.9 262 28-306 45-352 (359)
22 1fch_A Peroxisomal targeting s 99.4 3.9E-11 1.3E-15 112.8 24.5 253 28-313 72-349 (368)
23 1b89_A Protein (clathrin heavy 99.4 9.3E-14 3.2E-18 131.5 4.4 179 90-313 18-196 (449)
24 1b89_A Protein (clathrin heavy 99.4 3.6E-13 1.2E-17 127.5 8.1 269 34-369 17-301 (449)
25 3mkr_A Coatomer subunit epsilo 99.4 6.2E-11 2.1E-15 108.4 22.6 238 27-309 6-249 (291)
26 3cv0_A Peroxisome targeting si 99.4 3.1E-11 1.1E-15 111.2 19.0 253 90-383 36-314 (327)
27 3mkr_A Coatomer subunit epsilo 99.4 4.9E-11 1.7E-15 109.0 20.0 244 90-383 14-263 (291)
28 3fp2_A TPR repeat-containing p 99.3 3.2E-10 1.1E-14 112.3 25.9 300 29-383 34-406 (537)
29 2vq2_A PILW, putative fimbrial 99.3 9.7E-10 3.3E-14 95.2 24.6 215 53-301 7-222 (225)
30 2pl2_A Hypothetical conserved 99.3 1.8E-10 6.2E-15 100.4 19.5 200 51-286 2-212 (217)
31 2ho1_A Type 4 fimbrial biogene 99.3 2.9E-09 1E-13 94.3 27.4 211 54-300 37-248 (252)
32 1xnf_A Lipoprotein NLPI; TPR, 99.3 6.3E-10 2.2E-14 99.8 21.0 243 33-315 18-267 (275)
33 2ho1_A Type 4 fimbrial biogene 99.2 1.3E-09 4.4E-14 96.6 21.3 191 111-313 37-228 (252)
34 2vq2_A PILW, putative fimbrial 99.2 1.8E-09 6.2E-14 93.5 20.9 190 110-310 7-198 (225)
35 3uq3_A Heat shock protein STI1 99.2 8.2E-10 2.8E-14 97.9 18.9 230 111-383 5-235 (258)
36 2pl2_A Hypothetical conserved 99.2 7.8E-10 2.7E-14 96.3 18.1 190 109-314 3-205 (217)
37 3uq3_A Heat shock protein STI1 99.2 6.6E-09 2.3E-13 91.9 24.6 207 54-286 5-234 (258)
38 3nf1_A KLC 1, kinesin light ch 99.2 1.2E-09 4.1E-14 99.7 20.0 220 53-287 26-306 (311)
39 2q7f_A YRRB protein; TPR, prot 99.2 8.6E-10 2.9E-14 97.0 18.3 201 53-288 22-222 (243)
40 3nf1_A KLC 1, kinesin light ch 99.2 5.5E-10 1.9E-14 102.0 16.8 255 109-383 25-306 (311)
41 1xnf_A Lipoprotein NLPI; TPR, 99.2 3.5E-10 1.2E-14 101.5 14.6 210 87-310 17-231 (275)
42 4a1s_A PINS, partner of inscut 99.2 4.3E-09 1.5E-13 100.5 22.9 241 30-287 58-331 (411)
43 3ro2_A PINS homolog, G-protein 99.2 4.4E-09 1.5E-13 96.7 21.0 268 29-313 14-322 (338)
44 3sf4_A G-protein-signaling mod 99.1 7.4E-09 2.5E-13 98.2 22.2 270 28-314 17-327 (406)
45 3vtx_A MAMA; tetratricopeptide 99.1 8.9E-09 3.1E-13 86.6 20.2 172 110-295 4-175 (184)
46 3u4t_A TPR repeat-containing p 99.1 3.6E-09 1.2E-13 94.8 18.8 241 112-383 4-249 (272)
47 2ooe_A Cleavage stimulation fa 99.1 8E-08 2.7E-12 95.3 29.7 341 31-383 23-453 (530)
48 2q7f_A YRRB protein; TPR, prot 99.1 9.8E-09 3.4E-13 90.1 19.3 192 29-254 32-223 (243)
49 2ond_A Cleavage stimulation fa 99.1 5.7E-08 2E-12 89.2 24.6 226 37-288 33-270 (308)
50 3u4t_A TPR repeat-containing p 99.1 5.2E-08 1.8E-12 87.1 23.8 234 28-295 11-255 (272)
51 3edt_B KLC 2, kinesin light ch 99.1 1.4E-08 4.9E-13 90.9 19.9 196 91-287 24-280 (283)
52 4g1t_A Interferon-induced prot 99.1 3.3E-08 1.1E-12 96.1 23.9 341 32-399 63-470 (472)
53 3ulq_A Response regulator aspa 99.1 3.5E-08 1.2E-12 93.4 23.3 324 27-383 19-367 (383)
54 1ouv_A Conserved hypothetical 99.0 2.3E-07 7.8E-12 83.3 26.7 222 110-383 5-250 (273)
55 3ro2_A PINS homolog, G-protein 99.0 3.6E-09 1.2E-13 97.3 15.0 250 111-383 43-331 (338)
56 3sf4_A G-protein-signaling mod 99.0 5.7E-09 2E-13 99.0 16.6 288 52-383 7-335 (406)
57 2h6f_A Protein farnesyltransfe 99.0 1.6E-07 5.6E-12 88.8 25.6 234 33-305 110-364 (382)
58 4g1t_A Interferon-induced prot 99.0 1E-06 3.5E-11 85.5 31.9 233 51-306 48-293 (472)
59 4a1s_A PINS, partner of inscut 99.0 2.4E-08 8.2E-13 95.2 19.2 241 31-288 97-372 (411)
60 1ouv_A Conserved hypothetical 99.0 7.3E-07 2.5E-11 79.9 28.0 212 31-289 17-252 (273)
61 3as5_A MAMA; tetratricopeptide 99.0 4.6E-08 1.6E-12 81.6 18.3 166 111-288 8-173 (186)
62 4abn_A Tetratricopeptide repea 99.0 6.4E-08 2.2E-12 94.6 21.9 211 90-315 83-313 (474)
63 3ulq_A Response regulator aspa 99.0 2.1E-07 7.3E-12 88.0 24.9 238 31-287 114-367 (383)
64 3q15_A PSP28, response regulat 99.0 1.7E-07 5.8E-12 88.6 24.1 324 27-383 19-364 (378)
65 3edt_B KLC 2, kinesin light ch 99.0 8.5E-08 2.9E-12 85.8 20.4 204 34-252 22-280 (283)
66 1xi4_A Clathrin heavy chain; a 99.0 2.5E-07 8.7E-12 97.9 26.3 301 28-382 993-1307(1630)
67 2xm6_A Protein corresponding t 98.9 2.9E-06 9.9E-11 83.1 32.1 314 33-383 56-431 (490)
68 2h6f_A Protein farnesyltransfe 98.9 5.1E-07 1.7E-11 85.4 25.4 218 54-308 97-323 (382)
69 2xm6_A Protein corresponding t 98.9 8.6E-06 2.9E-10 79.7 35.1 298 51-383 36-395 (490)
70 4abn_A Tetratricopeptide repea 98.9 4.8E-08 1.6E-12 95.5 18.3 198 52-285 100-318 (474)
71 2ond_A Cleavage stimulation fa 98.9 2.7E-07 9.3E-12 84.6 22.4 208 92-313 33-260 (308)
72 3q15_A PSP28, response regulat 98.9 7.7E-07 2.6E-11 84.1 25.2 237 31-287 112-364 (378)
73 3vtx_A MAMA; tetratricopeptide 98.9 3.4E-07 1.2E-11 76.7 19.6 167 53-253 4-170 (184)
74 1hz4_A MALT regulatory protein 98.9 3.3E-06 1.1E-10 79.2 28.5 266 30-313 24-312 (373)
75 3as5_A MAMA; tetratricopeptide 98.9 6.8E-07 2.3E-11 74.2 21.2 165 55-253 9-173 (186)
76 4gyw_A UDP-N-acetylglucosamine 98.8 1.2E-07 4.1E-12 97.0 18.3 165 110-287 8-173 (723)
77 1qqe_A Vesicular transport pro 98.8 1.2E-06 4.2E-11 79.6 21.0 175 111-287 77-268 (292)
78 2ooe_A Cleavage stimulation fa 98.7 3.6E-06 1.2E-10 83.3 25.6 227 37-288 255-492 (530)
79 2fo7_A Synthetic consensus TPR 98.7 1.2E-06 4E-11 68.5 17.0 129 152-288 4-132 (136)
80 2ifu_A Gamma-SNAP; membrane fu 98.7 4.4E-06 1.5E-10 76.5 23.0 227 32-280 3-253 (307)
81 1xi4_A Clathrin heavy chain; a 98.7 8E-06 2.7E-10 86.8 26.9 253 33-336 1034-1300(1630)
82 1hz4_A MALT regulatory protein 98.7 1.9E-05 6.4E-10 74.1 27.6 239 30-287 63-321 (373)
83 2fo7_A Synthetic consensus TPR 98.7 2.1E-06 7.2E-11 66.9 16.9 130 113-253 3-132 (136)
84 1qqe_A Vesicular transport pro 98.7 1.5E-06 5.2E-11 79.0 18.2 170 118-287 44-227 (292)
85 4i17_A Hypothetical protein; T 98.6 4.3E-06 1.5E-10 72.6 19.6 153 110-275 6-169 (228)
86 4gyw_A UDP-N-acetylglucosamine 98.6 8.5E-07 2.9E-11 90.7 17.1 165 53-252 8-173 (723)
87 2ifu_A Gamma-SNAP; membrane fu 98.6 3.3E-06 1.1E-10 77.3 19.0 173 113-286 38-222 (307)
88 3qky_A Outer membrane assembly 98.5 1.2E-05 4.1E-10 71.4 20.7 196 109-312 13-250 (261)
89 3mv2_B Coatomer subunit epsilo 98.5 8.7E-05 3E-09 67.2 25.0 255 18-295 11-287 (310)
90 4i17_A Hypothetical protein; T 98.5 8.5E-06 2.9E-10 70.7 17.6 120 188-310 6-126 (228)
91 3urz_A Uncharacterized protein 98.4 2.3E-05 7.7E-10 67.2 18.3 168 117-300 10-196 (208)
92 3u3w_A Transcriptional activat 98.4 1.6E-05 5.5E-10 72.1 17.8 167 115-286 79-264 (293)
93 2yhc_A BAMD, UPF0169 lipoprote 98.4 4E-05 1.4E-09 66.5 19.5 172 110-289 3-214 (225)
94 3gw4_A Uncharacterized protein 98.4 7.8E-06 2.7E-10 69.2 13.9 162 122-287 3-175 (203)
95 3e4b_A ALGK; tetratricopeptide 98.3 7.5E-05 2.6E-09 72.3 21.5 253 28-305 11-294 (452)
96 3rjv_A Putative SEL1 repeat pr 98.3 6.6E-05 2.2E-09 64.5 18.8 182 92-290 3-199 (212)
97 3gw4_A Uncharacterized protein 98.3 3.7E-05 1.3E-09 64.9 17.0 170 31-217 3-175 (203)
98 2r5s_A Uncharacterized protein 98.3 2.2E-05 7.6E-10 65.2 14.8 159 115-286 10-171 (176)
99 1na0_A Designed protein CTPR3; 98.3 3.6E-05 1.2E-09 58.9 15.0 98 189-288 9-106 (125)
100 2qfc_A PLCR protein; TPR, HTH, 98.3 7.9E-05 2.7E-09 67.4 19.2 172 112-286 76-264 (293)
101 3qky_A Outer membrane assembly 98.2 6.9E-05 2.3E-09 66.4 18.0 173 53-253 14-224 (261)
102 2vsy_A XCC0866; transferase, g 98.2 1.3E-05 4.4E-10 80.1 14.5 153 89-254 3-158 (568)
103 2pzi_A Probable serine/threoni 98.2 1.9E-05 6.4E-10 80.7 14.6 169 90-274 406-583 (681)
104 4e6h_A MRNA 3'-END-processing 98.2 0.00033 1.1E-08 70.9 23.5 236 39-304 328-584 (679)
105 3qou_A Protein YBBN; thioredox 98.1 0.00019 6.4E-09 64.8 18.9 165 110-286 116-282 (287)
106 3u3w_A Transcriptional activat 98.1 0.00028 9.5E-09 63.8 19.9 163 90-252 90-265 (293)
107 1hh8_A P67PHOX, NCF-2, neutrop 98.1 0.00037 1.3E-08 59.2 19.3 131 152-294 9-154 (213)
108 2pzi_A Probable serine/threoni 98.1 3.9E-05 1.4E-09 78.3 14.7 174 30-239 401-583 (681)
109 2vsy_A XCC0866; transferase, g 98.1 6.6E-05 2.3E-09 74.8 15.4 153 124-288 2-157 (568)
110 2vyi_A SGTA protein; chaperone 98.1 0.00019 6.4E-09 55.3 14.8 117 189-308 12-128 (131)
111 2lni_A Stress-induced-phosphop 98.0 0.00017 5.8E-09 55.9 14.3 114 187-304 14-128 (133)
112 3gyz_A Chaperone protein IPGC; 98.0 0.00017 5.6E-09 58.4 14.4 102 189-295 36-138 (151)
113 3e4b_A ALGK; tetratricopeptide 98.0 0.0038 1.3E-07 60.2 26.6 232 33-286 48-314 (452)
114 3qou_A Protein YBBN; thioredox 98.0 0.00015 5E-09 65.6 15.4 150 90-251 132-282 (287)
115 2yhc_A BAMD, UPF0169 lipoprote 98.0 0.00077 2.6E-08 58.2 19.5 156 90-254 19-214 (225)
116 1elr_A TPR2A-domain of HOP; HO 98.0 0.00015 5E-09 55.9 13.5 113 190-305 5-123 (131)
117 4b4t_Q 26S proteasome regulato 98.0 0.00054 1.8E-08 65.3 19.4 213 62-286 12-243 (434)
118 3ro3_A PINS homolog, G-protein 98.0 0.00018 6.2E-09 57.6 13.7 106 111-216 9-116 (164)
119 4ga2_A E3 SUMO-protein ligase 98.0 3.4E-05 1.2E-09 62.3 9.2 52 191-244 67-119 (150)
120 2qfc_A PLCR protein; TPR, HTH, 98.0 0.0003 1E-08 63.6 16.5 138 114-251 118-264 (293)
121 3urz_A Uncharacterized protein 98.0 0.00022 7.5E-09 60.9 14.7 139 115-267 58-198 (208)
122 4gco_A Protein STI-1; structur 98.0 0.00036 1.2E-08 54.4 14.7 102 190-295 14-115 (126)
123 2e2e_A Formate-dependent nitri 97.9 0.00014 5E-09 60.0 13.1 113 190-306 45-160 (177)
124 3mv2_B Coatomer subunit epsilo 97.9 0.00019 6.6E-09 64.9 14.4 135 172-313 86-230 (310)
125 1hh8_A P67PHOX, NCF-2, neutrop 97.9 0.00074 2.5E-08 57.3 17.6 106 109-218 35-150 (213)
126 1na0_A Designed protein CTPR3; 97.9 0.00055 1.9E-08 52.0 15.1 63 190-253 44-106 (125)
127 1a17_A Serine/threonine protei 97.9 0.00083 2.8E-08 54.2 16.8 121 190-313 14-136 (166)
128 1a17_A Serine/threonine protei 97.9 0.00023 7.8E-09 57.6 13.1 93 191-285 49-143 (166)
129 1elw_A TPR1-domain of HOP; HOP 97.9 0.00074 2.5E-08 50.7 14.8 98 189-288 4-101 (118)
130 3upv_A Heat shock protein STI1 97.9 0.00063 2.1E-08 52.5 14.5 97 190-288 5-101 (126)
131 3sz7_A HSC70 cochaperone (SGT) 97.8 0.00092 3.1E-08 54.4 16.1 119 188-308 10-129 (164)
132 3ro3_A PINS homolog, G-protein 97.8 0.0009 3.1E-08 53.4 15.9 146 55-217 10-157 (164)
133 2r5s_A Uncharacterized protein 97.8 0.00065 2.2E-08 56.1 15.2 130 110-251 39-171 (176)
134 3q49_B STIP1 homology and U bo 97.8 0.0026 8.8E-08 49.5 17.4 98 188-287 8-105 (137)
135 2kck_A TPR repeat; tetratricop 97.8 0.00038 1.3E-08 51.9 12.0 97 190-288 7-106 (112)
136 2vgx_A Chaperone SYCD; alterna 97.8 0.00047 1.6E-08 55.3 12.9 98 189-288 21-118 (148)
137 2vyi_A SGTA protein; chaperone 97.8 0.0012 3.9E-08 50.6 14.8 119 149-275 12-130 (131)
138 4gcn_A Protein STI-1; structur 97.8 0.00066 2.3E-08 52.8 13.2 106 190-299 9-121 (127)
139 2dba_A Smooth muscle cell asso 97.7 0.0011 3.9E-08 52.2 14.7 102 188-294 27-132 (148)
140 1p5q_A FKBP52, FK506-binding p 97.7 0.00098 3.4E-08 61.6 16.2 95 190-286 197-292 (336)
141 4ga2_A E3 SUMO-protein ligase 97.7 0.00027 9.2E-09 56.9 10.9 137 89-239 11-149 (150)
142 2lni_A Stress-induced-phosphop 97.7 0.00058 2E-08 52.7 12.5 80 191-272 52-131 (133)
143 3dra_A Protein farnesyltransfe 97.7 0.0095 3.3E-07 54.0 22.1 223 35-287 48-286 (306)
144 2fbn_A 70 kDa peptidylprolyl i 97.7 0.00014 4.7E-09 61.5 9.4 95 190-286 89-184 (198)
145 2xcb_A PCRH, regulatory protei 97.7 0.00066 2.3E-08 53.8 12.9 97 190-288 19-115 (142)
146 3rjv_A Putative SEL1 repeat pr 97.7 0.0054 1.8E-07 52.3 19.5 178 39-256 5-200 (212)
147 2e2e_A Formate-dependent nitri 97.7 0.00035 1.2E-08 57.6 11.4 119 124-253 23-144 (177)
148 4b4t_Q 26S proteasome regulato 97.7 0.002 6.7E-08 61.3 18.2 207 29-252 13-244 (434)
149 1p5q_A FKBP52, FK506-binding p 97.7 0.0013 4.5E-08 60.7 16.3 119 190-313 148-283 (336)
150 3gyz_A Chaperone protein IPGC; 97.7 0.0005 1.7E-08 55.5 11.3 104 110-225 35-138 (151)
151 4gco_A Protein STI-1; structur 97.6 0.00085 2.9E-08 52.1 12.0 95 113-217 15-109 (126)
152 4gcn_A Protein STI-1; structur 97.6 0.0016 5.6E-08 50.5 13.5 110 112-227 9-119 (127)
153 3n71_A Histone lysine methyltr 97.6 0.0012 4.2E-08 64.1 14.7 62 226-287 395-463 (490)
154 4f3v_A ESX-1 secretion system 97.6 0.0036 1.2E-07 55.8 16.4 216 32-265 18-247 (282)
155 3dra_A Protein farnesyltransfe 97.6 0.015 5E-07 52.7 20.8 209 90-312 48-276 (306)
156 1elr_A TPR2A-domain of HOP; HO 97.6 0.001 3.5E-08 51.0 11.6 114 111-230 4-118 (131)
157 3n71_A Histone lysine methyltr 97.5 0.0014 4.6E-08 63.8 14.7 109 110-218 350-464 (490)
158 2xev_A YBGF; tetratricopeptide 97.5 0.0023 8E-08 49.2 13.6 101 191-296 4-111 (129)
159 2fbn_A 70 kDa peptidylprolyl i 97.5 0.0045 1.5E-07 51.9 16.3 120 191-313 40-175 (198)
160 4f3v_A ESX-1 secretion system 97.5 0.0059 2E-07 54.4 17.2 196 88-297 19-244 (282)
161 3k9i_A BH0479 protein; putativ 97.5 0.00027 9.2E-09 54.0 7.4 87 201-288 2-90 (117)
162 4e6h_A MRNA 3'-END-processing 97.5 0.0096 3.3E-07 60.2 20.0 188 94-289 328-534 (679)
163 2c2l_A CHIP, carboxy terminus 97.5 0.00096 3.3E-08 59.9 11.5 65 110-178 37-101 (281)
164 1hxi_A PEX5, peroxisome target 97.4 0.0016 5.6E-08 50.1 11.0 95 191-288 19-114 (121)
165 2vgx_A Chaperone SYCD; alterna 97.4 0.0018 6.2E-08 51.8 11.3 99 110-218 20-118 (148)
166 3upv_A Heat shock protein STI1 97.4 0.0025 8.5E-08 49.0 11.7 95 113-217 6-100 (126)
167 3q49_B STIP1 homology and U bo 97.4 0.0025 8.4E-08 49.6 11.7 100 109-218 7-106 (137)
168 2xcb_A PCRH, regulatory protei 97.3 0.0022 7.7E-08 50.7 11.3 98 111-218 18-115 (142)
169 1elw_A TPR1-domain of HOP; HOP 97.3 0.0054 1.8E-07 45.7 13.0 96 112-217 5-100 (118)
170 3sz7_A HSC70 cochaperone (SGT) 97.3 0.0028 9.6E-08 51.4 11.8 99 110-218 10-108 (164)
171 2c2l_A CHIP, carboxy terminus 97.3 0.0041 1.4E-07 55.7 13.3 93 191-286 6-99 (281)
172 3rkv_A Putative peptidylprolyl 97.2 0.016 5.4E-07 46.7 15.5 112 190-304 12-141 (162)
173 1kt0_A FKBP51, 51 kDa FK506-bi 97.2 0.0088 3E-07 57.7 15.7 118 191-313 270-404 (457)
174 2kck_A TPR repeat; tetratricop 97.1 0.0055 1.9E-07 45.2 11.0 26 114-139 9-34 (112)
175 2hr2_A Hypothetical protein; a 97.1 0.0066 2.2E-07 49.0 11.5 110 191-302 13-150 (159)
176 1ihg_A Cyclophilin 40; ppiase 97.1 0.012 4.1E-07 55.0 14.8 120 191-313 225-360 (370)
177 2dba_A Smooth muscle cell asso 97.0 0.016 5.4E-07 45.3 13.2 103 109-218 26-128 (148)
178 3k9i_A BH0479 protein; putativ 97.0 0.0025 8.7E-08 48.4 8.0 88 124-218 3-90 (117)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.0 0.0095 3.3E-07 57.4 13.6 95 190-286 318-413 (457)
180 1wao_1 Serine/threonine protei 97.0 0.0067 2.3E-07 58.9 12.4 114 196-314 13-130 (477)
181 1hxi_A PEX5, peroxisome target 96.9 0.004 1.4E-07 47.8 8.7 93 116-218 22-114 (121)
182 3q7a_A Farnesyltransferase alp 96.9 0.14 4.8E-06 47.0 19.9 224 35-288 69-331 (349)
183 3q7a_A Farnesyltransferase alp 96.8 0.23 7.7E-06 45.6 20.7 204 92-309 71-317 (349)
184 2l6j_A TPR repeat-containing p 96.8 0.0012 4.2E-08 49.2 4.7 63 190-253 5-67 (111)
185 1wao_1 Serine/threonine protei 96.8 0.0026 8.7E-08 61.9 7.7 91 190-283 41-134 (477)
186 2xev_A YBGF; tetratricopeptide 96.8 0.051 1.7E-06 41.3 13.9 95 154-253 7-105 (129)
187 2kat_A Uncharacterized protein 96.8 0.023 7.7E-07 42.7 11.6 102 206-309 2-104 (115)
188 1ihg_A Cyclophilin 40; ppiase 96.7 0.019 6.4E-07 53.7 12.9 138 112-280 224-362 (370)
189 3rkv_A Putative peptidylprolyl 96.6 0.026 9E-07 45.3 11.7 116 111-253 11-126 (162)
190 1klx_A Cysteine rich protein B 96.6 0.097 3.3E-06 40.9 14.6 110 168-290 11-128 (138)
191 2l6j_A TPR repeat-containing p 96.5 0.044 1.5E-06 40.3 11.3 70 222-294 2-71 (111)
192 1na3_A Designed protein CTPR2; 96.4 0.042 1.4E-06 38.7 10.6 61 191-252 11-71 (91)
193 3qww_A SET and MYND domain-con 96.4 0.02 6.9E-07 54.6 11.1 85 202-286 311-409 (433)
194 3qwp_A SET and MYND domain-con 96.4 0.032 1.1E-06 53.2 12.5 109 194-302 292-417 (429)
195 2if4_A ATFKBP42; FKBP-like, al 96.3 0.015 5.3E-07 53.5 9.6 98 191-293 181-296 (338)
196 2uy1_A Cleavage stimulation fa 96.3 0.4 1.4E-05 46.5 19.8 177 91-285 195-380 (493)
197 3qww_A SET and MYND domain-con 96.3 0.028 9.5E-07 53.6 11.3 92 125-216 312-409 (433)
198 3ma5_A Tetratricopeptide repea 96.3 0.033 1.1E-06 40.8 9.5 83 223-306 6-89 (100)
199 2if4_A ATFKBP42; FKBP-like, al 96.3 0.021 7.1E-07 52.6 10.2 95 191-288 232-328 (338)
200 1na3_A Designed protein CTPR2; 96.2 0.06 2.1E-06 37.8 10.4 78 224-304 9-87 (91)
201 2hr2_A Hypothetical protein; a 96.1 0.094 3.2E-06 42.2 11.9 27 114-140 14-40 (159)
202 3ly7_A Transcriptional activat 95.9 0.38 1.3E-05 44.4 16.5 75 222-300 275-349 (372)
203 3qwp_A SET and MYND domain-con 95.8 0.18 6E-06 48.0 14.5 70 110-179 328-401 (429)
204 2uy1_A Cleavage stimulation fa 95.7 1.7 5.7E-05 42.1 24.6 125 150-287 287-412 (493)
205 1klx_A Cysteine rich protein B 95.6 0.24 8.2E-06 38.6 12.1 111 126-255 10-128 (138)
206 3dss_A Geranylgeranyl transfer 95.5 1.4 4.7E-05 40.1 20.7 156 127-294 90-271 (331)
207 2kat_A Uncharacterized protein 95.5 0.12 4E-06 38.5 9.9 80 93-178 3-82 (115)
208 1zu2_A Mitochondrial import re 95.4 0.057 1.9E-06 43.4 7.8 106 200-309 13-139 (158)
209 3ma5_A Tetratricopeptide repea 95.4 0.086 2.9E-06 38.4 8.4 63 189-252 7-69 (100)
210 3mkq_A Coatomer beta'-subunit; 95.3 0.59 2E-05 48.0 17.4 151 30-215 609-762 (814)
211 3ly7_A Transcriptional activat 95.3 0.74 2.5E-05 42.4 15.8 55 257-313 275-329 (372)
212 1dce_A Protein (RAB geranylger 95.2 0.74 2.5E-05 45.5 16.9 176 90-277 44-244 (567)
213 1dce_A Protein (RAB geranylger 95.0 0.77 2.6E-05 45.4 16.2 171 123-304 40-236 (567)
214 1zu2_A Mitochondrial import re 94.7 0.043 1.5E-06 44.1 5.4 117 122-253 13-147 (158)
215 1wy6_A Hypothetical protein ST 94.7 1.1 3.8E-05 34.6 14.2 138 123-290 19-156 (172)
216 3mkq_A Coatomer beta'-subunit; 94.6 0.41 1.4E-05 49.2 13.9 131 115-286 633-763 (814)
217 2kc7_A BFR218_protein; tetratr 94.3 0.13 4.5E-06 36.9 7.0 55 197-253 8-64 (99)
218 3dss_A Geranylgeranyl transfer 94.1 3.3 0.00011 37.6 22.5 223 36-287 46-303 (331)
219 1wy6_A Hypothetical protein ST 93.2 2.3 7.8E-05 32.9 14.3 143 28-221 15-157 (172)
220 2kc7_A BFR218_protein; tetratr 92.4 0.49 1.7E-05 33.7 7.4 58 230-288 6-64 (99)
221 3u64_A Protein TP_0956; tetrat 92.0 1.9 6.6E-05 38.1 11.6 127 136-265 142-283 (301)
222 1pc2_A Mitochondria fission pr 91.7 3.2 0.00011 32.8 11.6 93 205-301 14-111 (152)
223 4h7y_A Dual specificity protei 91.5 2.9 0.0001 32.9 10.9 53 203-256 74-126 (161)
224 3mkq_B Coatomer subunit alpha; 91.4 3.8 0.00013 33.3 12.0 104 156-285 12-115 (177)
225 3mkq_B Coatomer subunit alpha; 90.9 3.9 0.00013 33.2 11.6 96 90-215 20-115 (177)
226 4b4t_P 26S proteasome regulato 90.3 12 0.00043 35.3 19.8 180 107-287 52-246 (445)
227 2v5f_A Prolyl 4-hydroxylase su 90.3 1.8 6.3E-05 31.4 8.7 30 258-287 45-74 (104)
228 2v5f_A Prolyl 4-hydroxylase su 89.5 2.6 8.8E-05 30.6 9.0 66 188-253 4-75 (104)
229 3u64_A Protein TP_0956; tetrat 89.1 3.6 0.00012 36.4 10.8 114 187-302 152-285 (301)
230 4fhn_B Nucleoporin NUP120; pro 88.5 23 0.0008 38.0 18.9 204 52-286 840-1048(1139)
231 3bee_A Putative YFRE protein; 88.3 5.3 0.00018 28.4 10.9 65 223-288 5-72 (93)
232 1pc2_A Mitochondria fission pr 88.3 4.3 0.00015 32.1 9.7 88 127-223 14-103 (152)
233 2ff4_A Probable regulatory pro 87.4 2.7 9.3E-05 39.1 9.6 69 228-297 175-248 (388)
234 4h7y_A Dual specificity protei 85.4 6.3 0.00021 31.0 8.9 109 191-302 15-136 (161)
235 2ff4_A Probable regulatory pro 84.0 5.1 0.00017 37.3 9.6 70 191-261 173-247 (388)
236 1v54_E Cytochrome C oxidase po 83.5 7.4 0.00025 28.2 7.9 33 219-251 40-72 (109)
237 4b4t_R RPN7, 26S proteasome re 83.2 12 0.00042 35.1 12.1 101 113-218 133-237 (429)
238 1nzn_A CGI-135 protein, fissio 82.8 11 0.00037 28.7 9.2 96 195-294 7-107 (126)
239 1v54_E Cytochrome C oxidase po 82.1 12 0.00042 27.1 9.5 70 234-304 19-89 (109)
240 4b4t_P 26S proteasome regulato 81.9 35 0.0012 32.2 22.7 256 30-286 26-322 (445)
241 4gns_B Protein CSD3, chitin bi 81.7 13 0.00044 37.8 12.0 129 115-251 252-398 (754)
242 2y69_E Cytochrome C oxidase su 78.4 21 0.00071 27.4 9.5 64 239-303 68-131 (152)
243 2p58_C Putative type III secre 77.0 17 0.00056 26.3 7.8 86 204-298 22-107 (116)
244 1nzn_A CGI-135 protein, fissio 76.9 22 0.00075 26.9 9.5 98 117-223 7-106 (126)
245 3bee_A Putative YFRE protein; 76.1 18 0.00061 25.5 11.0 27 191-217 45-71 (93)
246 2uwj_G Type III export protein 73.8 16 0.00054 26.4 7.0 86 204-298 21-106 (115)
247 2nsz_A Programmed cell death p 72.9 25 0.00087 26.6 8.9 68 226-294 9-78 (129)
248 2y69_E Cytochrome C oxidase su 70.5 34 0.0012 26.3 9.6 34 185-218 84-117 (152)
249 4b4t_R RPN7, 26S proteasome re 69.8 72 0.0025 29.8 14.6 107 191-299 133-248 (429)
250 4fke_A Aminopeptidase N; zinc 69.8 1.1E+02 0.0037 31.9 15.6 146 153-305 690-842 (909)
251 4gns_B Protein CSD3, chitin bi 69.3 37 0.0013 34.5 11.4 52 232-285 345-397 (754)
252 3esl_A Checkpoint serine/threo 65.0 52 0.0018 27.1 9.5 55 238-292 93-148 (202)
253 2ion_A PDCD4, programmed cell 64.7 26 0.00089 27.5 7.5 65 227-292 12-78 (152)
254 3txn_A 26S proteasome regulato 64.3 90 0.0031 28.8 16.6 172 113-286 21-208 (394)
255 4fhn_B Nucleoporin NUP120; pro 62.3 1.7E+02 0.0058 31.3 16.2 150 116-278 817-990 (1139)
256 1k1a_A B-cell lymphoma 3-encod 59.1 50 0.0017 27.3 9.1 49 334-396 162-212 (241)
257 3o48_A Mitochondria fission 1 57.0 63 0.0021 24.7 9.0 66 154-223 45-110 (134)
258 2wvi_A Mitotic checkpoint seri 55.2 30 0.001 27.6 6.3 52 242-293 78-130 (164)
259 4a1g_A Mitotic checkpoint seri 55.0 41 0.0014 26.3 7.0 51 242-292 83-134 (152)
260 4a1g_A Mitotic checkpoint seri 53.7 78 0.0027 24.8 12.9 81 57-144 47-134 (152)
261 2d2s_A Exocyst complex compone 52.5 79 0.0027 26.8 9.0 88 196-286 25-118 (235)
262 2ion_A PDCD4, programmed cell 51.5 77 0.0026 24.7 8.2 65 191-256 11-77 (152)
263 1zbp_A Hypothetical protein VP 50.5 43 0.0015 29.1 7.0 72 119-197 5-76 (273)
264 3lvg_A Clathrin heavy chain 1; 49.8 0.0099 3.4E-07 56.4 -16.9 162 114-313 57-218 (624)
265 3eiq_C Programmed cell death p 47.8 1.6E+02 0.0055 26.7 14.7 84 226-310 219-304 (358)
266 2nsz_A Programmed cell death p 46.0 93 0.0032 23.4 9.5 65 191-256 9-75 (129)
267 4aez_C MAD3, mitotic spindle c 43.8 43 0.0015 28.1 5.8 52 241-292 131-183 (223)
268 3cl3_A ORF K13, KS-vflip; deat 42.8 1.3E+02 0.0045 24.3 8.7 138 81-246 30-172 (183)
269 3ffl_A Anaphase-promoting comp 42.5 1.3E+02 0.0043 24.0 9.9 117 27-143 27-154 (167)
270 3ygs_P Procaspase 9; apoptosis 40.9 69 0.0024 22.7 5.9 58 97-164 26-83 (97)
271 2xdt_A Endoplasmic reticulum a 40.1 3.4E+02 0.011 28.1 20.4 123 151-284 682-810 (897)
272 1zbp_A Hypothetical protein VP 39.9 96 0.0033 26.9 7.5 74 232-306 5-80 (273)
273 3esl_A Checkpoint serine/threo 38.6 1.6E+02 0.0056 24.1 9.3 69 92-160 96-164 (202)
274 3l6a_A Eukaryotic translation 38.5 2E+02 0.0068 26.1 10.0 25 191-215 14-38 (364)
275 2keb_A DNA polymerase subunit 38.2 1.1E+02 0.0037 21.9 6.6 57 242-300 27-88 (101)
276 1s6c_A KV4 potassium channel-i 37.8 1.4E+02 0.0048 23.2 9.0 24 260-283 157-180 (183)
277 1k1a_A B-cell lymphoma 3-encod 37.4 45 0.0015 27.5 5.3 160 117-293 12-177 (241)
278 2wvi_A Mitotic checkpoint seri 36.4 1.6E+02 0.0054 23.3 11.2 55 91-145 76-130 (164)
279 2b7e_A PRE-mRNA processing pro 36.1 23 0.00079 22.7 2.3 29 206-234 3-31 (59)
280 3rjo_A Endoplasmic reticulum a 36.1 2.6E+02 0.0089 25.7 21.4 142 151-303 199-349 (419)
281 2zu6_B Programmed cell death p 36.0 1.1E+02 0.0039 27.0 7.7 83 226-309 168-252 (307)
282 2ijq_A Hypothetical protein; s 35.6 1.6E+02 0.0055 23.2 8.0 53 235-287 43-103 (161)
283 3m0z_A Putative aldolase; MCSG 33.7 32 0.0011 28.8 3.4 86 167-252 146-246 (249)
284 3m6y_A 4-hydroxy-2-oxoglutarat 32.9 35 0.0012 28.9 3.5 86 167-252 169-269 (275)
285 1y8m_A FIS1; mitochondria, unk 32.9 1.7E+02 0.0058 22.6 10.6 66 154-223 44-109 (144)
286 2zu6_B Programmed cell death p 32.7 2.6E+02 0.0089 24.7 11.4 66 191-257 168-235 (307)
287 3ljn_A Hypothetical protein; a 32.5 2.1E+02 0.0073 25.3 9.4 96 153-259 21-116 (364)
288 2p58_C Putative type III secre 32.2 1.4E+02 0.0049 21.5 6.3 60 238-303 21-80 (116)
289 2wpv_A GET4, UPF0363 protein Y 31.8 2.7E+02 0.0093 24.6 17.2 83 27-124 20-105 (312)
290 1ug3_A EIF4GI, eukaryotic prot 31.3 70 0.0024 28.8 5.6 23 229-251 16-38 (339)
291 2fu4_A Ferric uptake regulatio 29.8 1.3E+02 0.0043 20.1 6.4 59 250-309 8-67 (83)
292 3lvg_A Clathrin heavy chain 1; 29.0 0.95 3.3E-05 43.2 -7.2 154 110-285 82-255 (624)
293 3aji_A 26S proteasome non-ATPa 28.8 79 0.0027 25.8 5.3 144 117-279 9-156 (231)
294 3t8k_A Uncharacterized protein 28.5 2.2E+02 0.0075 22.5 8.1 166 118-291 10-183 (186)
295 4ets_A Ferric uptake regulatio 28.5 1.4E+02 0.0049 23.4 6.4 72 92-167 14-87 (162)
296 1oai_A Nuclear RNA export fact 28.3 30 0.001 22.2 1.8 23 202-224 33-56 (59)
297 2fu4_A Ferric uptake regulatio 28.3 1.3E+02 0.0046 20.0 6.4 63 212-275 5-68 (83)
298 2rg8_A Programmed cell death p 27.7 1.2E+02 0.004 24.0 5.8 24 228-251 14-37 (165)
299 4aez_C MAD3, mitotic spindle c 27.4 2.7E+02 0.0093 23.2 11.2 54 91-144 130-183 (223)
300 1wdy_A 2-5A-dependent ribonucl 27.0 2.7E+02 0.0092 23.1 9.9 191 153-394 6-213 (285)
301 2lwd_A Probable ATP-dependent 26.1 1.8E+02 0.0062 20.8 6.1 49 110-164 42-90 (100)
302 2uwj_G Type III export protein 25.5 1.4E+02 0.0048 21.6 5.0 60 238-303 20-79 (115)
303 1bd8_A P19INK4D CDK4/6 inhibit 25.1 81 0.0028 23.8 4.4 146 117-282 5-153 (156)
304 3eiq_C Programmed cell death p 24.8 3.9E+02 0.013 24.2 13.5 75 191-270 219-295 (358)
305 3ggy_A Increased sodium tolera 24.8 2.8E+02 0.0096 22.5 8.9 25 114-138 109-133 (193)
306 1wgl_A TOLL-interacting protei 23.7 62 0.0021 20.7 2.7 22 202-223 36-57 (59)
307 2xig_A Ferric uptake regulatio 22.8 2.3E+02 0.0079 21.7 6.6 62 246-308 14-75 (150)
308 3pvs_A Replication-associated 22.7 3.6E+02 0.012 25.2 9.1 40 265-304 258-300 (447)
309 3aji_A 26S proteasome non-ATPa 22.4 1.4E+02 0.0048 24.2 5.7 122 153-293 7-133 (231)
310 3o48_A Mitochondria fission 1 21.7 2.7E+02 0.0092 21.1 10.1 55 239-295 58-112 (134)
311 1mzb_A Ferric uptake regulatio 21.7 2.3E+02 0.0079 21.2 6.3 60 249-309 8-68 (136)
312 2fe3_A Peroxide operon regulat 21.1 2.3E+02 0.0077 21.6 6.2 61 248-309 11-71 (145)
313 3ffl_A Anaphase-promoting comp 21.0 3.1E+02 0.011 21.7 10.4 63 155-217 26-91 (167)
314 1wty_A Hypothetical protein TT 20.9 2.3E+02 0.0077 20.7 5.9 88 168-266 4-93 (119)
315 2yru_A Steroid receptor RNA ac 20.8 1.4E+02 0.0049 22.1 4.7 41 212-252 49-89 (118)
316 2fe3_A Peroxide operon regulat 20.4 2.8E+02 0.0097 21.0 7.5 63 212-275 10-72 (145)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.1e-34 Score=283.51 Aligned_cols=219 Identities=15% Similarity=0.163 Sum_probs=186.0
Q ss_pred hhhHHHHHHHhhhcCCCccCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc--
Q 042756 91 SSLAFPLYMRITEESWFQWNP-KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG-- 167 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~-- 167 (425)
...+..+++++.+++ ..+.+ .+++.+|.+|++.|++++|+++|++|.+.|..|+ ..+||+||.+|++.+..+.
T Consensus 6 ~s~~e~L~~~~~~k~-~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~ 81 (501)
T 4g26_A 6 ASPSENLSRKAKKKA-IQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESS 81 (501)
T ss_dssp -------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSS
T ss_pred cchHHHHHHHHHHhc-ccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhh
Confidence 345667777777776 33333 4688999999999999999999999999887665 4589999999998876433
Q ss_pred ----HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHH
Q 042756 168 ----FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDM 243 (425)
Q Consensus 168 ----~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a 243 (425)
++++++++.+|...+ +.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|
T Consensus 82 ~~~~l~~A~~lf~~M~~~G--~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVDK--VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp CCHHHHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred hcchHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 678999999998877 88999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 042756 244 ERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315 (425)
Q Consensus 244 ~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~ 315 (425)
.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|++.|+.|+..||+.++..|+..+....+..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~~~g~~ 231 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVK 231 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHHTCCBS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcchhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999998776655543
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6.5e-34 Score=280.02 Aligned_cols=187 Identities=16% Similarity=0.069 Sum_probs=172.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHCCCCcCHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL---------LEDMERIVNQMESDGTRVDTV 260 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~---------~~~a~~~~~~m~~~g~~~~~~ 260 (425)
..++.+|++|++.|++++|+++|++|.+.|++||.+|||+||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 46888999999999999999999999999999999999999999987764 688999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHH
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKE 340 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (425)
|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+++.+ ..++.+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A---------------------~~l~~~ 165 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA---------------------YEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH---------------------HHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH---------------------HHHHHH
Confidence 99999999999999999999999999999999999999999999998887553 345667
Q ss_pred HHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccc
Q 042756 341 LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHST 407 (425)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~ 407 (425)
+.+.|+.||..||++||.+|++.|+.++| .++|++|++ .|..|+..||+.++..++.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A-----~~ll~~Mr~-----~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKV-----YKTLQRLRD-----LVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH-----HTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHH-----HHHHHHHHH-----hCCCcCHHHHHHHHHHHhc
Confidence 77899999999999999999999999999 999999999 9999999999999876654
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5.7e-25 Score=222.17 Aligned_cols=376 Identities=9% Similarity=-0.075 Sum_probs=283.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC------------CCchhhhHHH
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT------------HPRLSSLAFP 96 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~------------~~~~~~~a~~ 96 (425)
.++..|++++|.++|+.+... .||..++..+..+|.+.|+++.|..++.+++..... ..+.+++|.+
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 171 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLDI-TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALN 171 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHccCchHHHHHHHHHHhh-CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHH
Confidence 334557899999999999854 568899999999999999999999999998533211 1235789999
Q ss_pred HHHHhhhcC--------------CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH--------------
Q 042756 97 LYMRITEES--------------WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSREREL-------------- 148 (425)
Q Consensus 97 lf~~m~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~-------------- 148 (425)
+|+++.... ....+..+|+.++.+|.+.|++++|.++|++|.+.... ....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~ 250 (597)
T 2xpi_A 172 LLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADE 250 (597)
T ss_dssp HHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHH
T ss_pred HHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchh
Confidence 999532221 13456889999999999999999999999999875322 1110
Q ss_pred ---------------------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhH
Q 042756 149 ---------------------VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHE 207 (425)
Q Consensus 149 ---------------------~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 207 (425)
..+|+.++..|.+.|+ .+++...+.++... .++..+|+.++.+|.+.|++++
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 323 (597)
T 2xpi_A 251 EWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDE---LRRAEDYLSSINGL----EKSSDLLLCKADTLFVRSRFID 323 (597)
T ss_dssp HHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHH---HHHHHHHHHTSTTG----GGCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcch---HHHHHHHHHHhhcC----CchHHHHHHHHHHHHHhcCHHH
Confidence 0112233455556666 56677777666532 3678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 208 AENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 208 a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
|.++|+++.+.+ +.+..+++.++.+|.+.|++++|.++|+.+.+.. ..+..+|+.++..|.+.|++++|.++|+++.+
T Consensus 324 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 324 VLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp HHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999998765 3367789999999999999999999999998643 34788999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cCC---chhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeec
Q 042756 288 SGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SND---FPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDS 355 (425)
Q Consensus 288 ~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (425)
.. ..+..+|+.+..+|.+.|++++++. +.. +..+...+...+..+++....+........+..+|+.
T Consensus 402 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 480 (597)
T 2xpi_A 402 MD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNE 480 (597)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 42 3357799999999999888877743 111 2223335666677666665554443333456788999
Q ss_pred cccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCC--eeeeeeccccccccccchHHHHHHHHHh
Q 042756 356 GETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPA--EITVVCGSGKHSTVRGESSVKAMVKKMM 422 (425)
Q Consensus 356 li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~--~~t~~~l~~~~~~~~~~~~~~~~~~~~~ 422 (425)
++..|.+.|++++| .++|++|.+..+ ..+..|+ ..+|..+...|...+..+......+++.
T Consensus 481 l~~~~~~~g~~~~A-----~~~~~~~~~~~~-~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 481 LGVVAFNKSDMQTA-----INHFQNALLLVK-KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHTTCHHHH-----HHHHHHHHHHHH-HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHH-----HHHHHHHHHhhh-ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999 999999987211 0166888 6788888888888777777776666654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=5.8e-24 Score=214.77 Aligned_cols=343 Identities=9% Similarity=-0.087 Sum_probs=252.7
Q ss_pred HHHhhHHHHHHHHHHhHHhc----------------CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC--------
Q 042756 31 LTARLTKQGQRFLSSLALAV----------------TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT-------- 86 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~----------------~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~-------- 86 (425)
...|++++|.++|+++.... .++..+|+.++.+|.+.|+.+.|...|.+++..+..
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 44567778888887432111 235899999999999999999999999998654321
Q ss_pred -------------------------------------------CCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHh
Q 042756 87 -------------------------------------------HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDK 123 (425)
Q Consensus 87 -------------------------------------------~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~ 123 (425)
..+.+++|.++|+++.+. .++..+++.++.+|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHH
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHH
Confidence 123567788888888764 3788899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcC
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 203 (425)
.|++++|.++|+++.+.... . ..+|..++.+|.+.|+ .+++...+.++.... ..+..+|+.++.+|.+.|
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-N---LDVYPLHLASLHESGE---KNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-C---CTTHHHHHHHHHHHTC---HHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHHcCcc-c---HHHHHHHHHHHHHhCC---HHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhc
Confidence 99999999999998875322 2 2367889999999999 455555555554322 235668999999999999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+.+.+.+ +.+..+|+.++.+|.+.|++++|.++|+
T Consensus 388 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 388 KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998742 2357799999999999999999999999988764 3478899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHh----CCCCcc--cceeeccc
Q 042756 284 KMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELED----SSVLDE--AMKWDSGE 357 (425)
Q Consensus 284 ~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~li 357 (425)
+|.+.. ..+..+|+.+...|.+.|+++++.. .+.++++ .+..|+ ..+|+.+.
T Consensus 466 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~---------------------~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 466 SSYALF-QYDPLLLNELGVVAFNKSDMQTAIN---------------------HFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH---------------------HHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHhC-CCChHHHHHHHHHHHHhCCHHHHHH---------------------HHHHHHHhhhccccchhhHHHHHHHHH
Confidence 998753 3467889999999988888766532 1122221 244565 56777777
Q ss_pred cchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeeeeccccccccccchHHHHHHHHH
Q 042756 358 TKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVVCGSGKHSTVRGESSVKAMVKKM 421 (425)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~~l~~~~~~~~~~~~~~~~~~~~ 421 (425)
.+|.+.|++++| .++|+++.+ .+ ..+..+|..+...+...+..+......+++
T Consensus 524 ~~~~~~g~~~~A-----~~~~~~~~~-----~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 524 HAYRKLKMYDAA-----IDALNQGLL-----LS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHTTCHHHH-----HHHHHHHHH-----HS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHH-----HHHHHHHHH-----hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 777777777777 777777766 22 224556666666666655555555555544
No 5
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=206.62 Aligned_cols=121 Identities=15% Similarity=0.173 Sum_probs=113.5
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRV---KGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
..|||+||++||+.|++++|.++|++|.+ .|+.||.+|||+||++||+.|++++|.++|++|.+.|+.||.+|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35999999999999999999999998874 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 266 LSSYGDHNEL-SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 266 i~~~~~~g~~-~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
|.++|+.|+. ++|.++|++|.+.|+.||..||+++++++.+.+-
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v 251 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH
Confidence 9999999984 7899999999999999999999999998776433
No 6
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.84 E-value=2.1e-21 Score=197.14 Aligned_cols=152 Identities=13% Similarity=0.156 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 042756 147 ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226 (425)
Q Consensus 147 ~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 226 (425)
....||++||++||+.|+.+++.+++..+.++...+ +.||++|||+||++||+.|++++|.++|++|.+.|+.||.+|
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG--~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR--KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH--TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC--CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 335689999999999999554444444445444444 789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC-HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHH
Q 042756 227 YKCIIYGYGRLGL-LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS------VRTYNS 299 (425)
Q Consensus 227 y~~ll~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd------~~t~~~ 299 (425)
||++|+++|+.|+ .++|.++|++|.+.|+.||.++||+++.++.+. .+++..+++ ..++.|+ ..|...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 9999999999998 578999999999999999999999999877655 344444555 4556665 444444
Q ss_pred HHHHHH
Q 042756 300 VLNSCS 305 (425)
Q Consensus 300 ll~~~~ 305 (425)
|.+-|.
T Consensus 278 L~dl~s 283 (1134)
T 3spa_A 278 LRDVYA 283 (1134)
T ss_dssp THHHHC
T ss_pred HHHHHc
Confidence 444444
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.81 E-value=4.5e-17 Score=155.40 Aligned_cols=334 Identities=11% Similarity=-0.056 Sum_probs=196.3
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHHH
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAFP 96 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~~ 96 (425)
....|++++|.+.++.+....+.+...+..+...+...|+.+.+...+...+....... +.+++|.+
T Consensus 9 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 34566666777666666554444455555555666666666666666665544332211 23566666
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
.|+++.+.+ +-+...|..+..++.+.|++++|.+.|+++.+.. |+....+..+-..+...|+++ ++...+.
T Consensus 89 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~---~A~~~~~ 159 (388)
T 1w3b_A 89 HYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN----PDLYCVRSDLGNLLKALGRLE---EAKACYL 159 (388)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC----TTCTHHHHHHHHHHHTTSCHH---HHHHHHH
T ss_pred HHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHccCHH---HHHHHHH
Confidence 666665543 1244556667777777777777777777766541 111224555666666667633 3333333
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
+.....+ -+..+|+.+...+.+.|++++|...|+++.+.+ +-+...|..+-..+...|++++|...|+...+.. +
T Consensus 160 ~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p 234 (388)
T 1w3b_A 160 KAIETQP---NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-P 234 (388)
T ss_dssp HHHHHCT---TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-T
T ss_pred HHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c
Confidence 3332211 123467777777777777777777777776642 1234566666667777777777777776665542 1
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cCCc---hhhHH
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SNDF---PLSIL 324 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~~~---~~~~~ 324 (425)
-+..+|+.+...|.+.|++++|.+.|+++.+.+ ..+..+|..+...+.+.|+++++.. +... ..+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 245666777777777777777777777766542 1234566666666666666555532 1111 11112
Q ss_pred HHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 325 ELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+...+..+++....+-.-.....+..+|..+...|.+.|++++| .+.|+++.+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~a~~ 367 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA-----LMHYKEAIR 367 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH-----HHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHh
Confidence 334444445554443333333334567899999999999999999 999999987
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.73 E-value=3.2e-15 Score=142.50 Aligned_cols=266 Identities=12% Similarity=-0.007 Sum_probs=144.8
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhhHHHHH
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSLAFPLY 98 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~a~~lf 98 (425)
..+..++|..+++......+.+..+|..+...+.+.|+++.|...+.+++....... +.+++|.+.|
T Consensus 45 ~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 124 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124 (388)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345666666666665554445666666666666666666666666666654322211 2345566666
Q ss_pred HHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 99 MRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 99 ~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
+++.+.+. -+...+..+-..+...|++++|.++|+++.+. .|....+|..+...+.+.|+++. +...+.+.
T Consensus 125 ~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a 195 (388)
T 1w3b_A 125 VSALQYNP--DLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSNLGCVFNAQGEIWL---AIHHFEKA 195 (388)
T ss_dssp HHHHHHCT--TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTCHHH---HHHHHHHH
T ss_pred HHHHHhCC--CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHH
Confidence 66554431 12334445555556666666666666666553 11122355666666666666333 33333333
Q ss_pred hhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 179 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
....+ -+...|..+...+...|++++|...|++.... .| +..++..+..+|.+.|++++|.+.|+.+.+..- .
T Consensus 196 l~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~ 269 (388)
T 1w3b_A 196 VTLDP---NFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-H 269 (388)
T ss_dssp HHHCT---TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-S
T ss_pred HhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-C
Confidence 22221 12235666666666666666666666665553 23 345666666666666666666666666655421 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+..+|+.+...|.+.|++++|.++|+++.+.. ..+..++..+...+...|+++++
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 324 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEA 324 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 34556666666666666666666666665442 33455666666666555555544
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.73 E-value=4.4e-15 Score=144.14 Aligned_cols=294 Identities=14% Similarity=0.031 Sum_probs=217.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
.....|.+++|.++|+.+....+.+..+|..+...+...|+++.|...+.+++ +.+ +
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------~~~--p 91 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI---------------------QLK--M 91 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--T
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------hcC--C
Confidence 34566799999999999987766689999999999999997777766666654 222 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHH------------HHHHhcCCcccHHHHHHHHH
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLI------------DSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li------------~~~~~~g~~~~~~~~~~~~~ 176 (425)
.+..++..+...|.+.|++++|.+.|+++.+... ........+..+. ..+.+.|++ +++...+.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~A~~~~~ 167 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDY---TAAIAFLD 167 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH---HHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHH
Confidence 3577888999999999999999999999986422 1110003445553 348888995 45555555
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
++.... ..+..++..+..+|.+.|++++|.++|+++.+.. +.+..++..+..+|.+.|++++|.+.|+.+.+..-
T Consensus 168 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 242 (450)
T 2y4t_A 168 KILEVC---VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ- 242 (450)
T ss_dssp HHHHHC---TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHhC---CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 544322 1245689999999999999999999999998752 34678999999999999999999999999986531
Q ss_pred cCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHHHHHHHHhhccCCc
Q 042756 257 VDTVCSNMV------------LSSYGDHNELSRMVLWLQKMKDSGIPFS-----VRTYNSVLNSCSTIMSMLQDLNSNDF 319 (425)
Q Consensus 257 ~~~~~yn~l------------i~~~~~~g~~~~A~~l~~~M~~~g~~pd-----~~t~~~ll~~~~~~~~~~~~~~~~~~ 319 (425)
.+...+..+ ...|...|++++|..+|+++.+. .|+ ...|..+...+.+.|++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~----- 315 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAI----- 315 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHH-----
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHH-----
Confidence 244555555 78999999999999999999874 455 335555656665555554432
Q ss_pred hhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+.+.++. ...+..+|..+..+|...|++++| .+.|++..+
T Consensus 316 ----------------~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~al~ 357 (450)
T 2y4t_A 316 ----------------RVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEA-----IQDYETAQE 357 (450)
T ss_dssp ----------------HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHT
T ss_pred ----------------HHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHH
Confidence 222233322 223567899999999999999999 999999986
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-13 Score=135.87 Aligned_cols=244 Identities=7% Similarity=-0.097 Sum_probs=144.1
Q ss_pred cCChhHHHHHHHHHHH-----hc-CCCc----hhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH
Q 042756 124 QGQREEAETLILETLS-----KL-GSRE----RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~-----~~-~~~~----~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (425)
.|++++|.++|+++.+ .. .+.. +....++..+...+...|++ +++...+.+..... |+...|.
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~l~~~----~~~~~~~ 274 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP---LGAHEDIKKAIELF----PRVNSYI 274 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHC----CCHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhhC----ccHHHHH
Confidence 5677777777777665 21 1111 23344566666667777773 33444444433322 2244667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
.+...|...|++++|.+.|++..... +.+..++..+...|.+.|++++|...|+...+..- .+...|..+...|...|
T Consensus 275 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 352 (514)
T 2gw1_A 275 YMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYREN 352 (514)
T ss_dssp HHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcC
Confidence 77777777777777777777766542 22455666677777777777777777777665432 24566667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cC---------CchhhHHHHHh---hcch
Q 042756 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SN---------DFPLSILELTE---VLNE 332 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~---------~~~~~~~~~~~---~~~~ 332 (425)
++++|..+|+++.+.. ..+..++..+...+...|+.+.+.. +. .+..+...+.. .+..
T Consensus 353 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 431 (514)
T 2gw1_A 353 KFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENF 431 (514)
T ss_dssp CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHH
T ss_pred CHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCH
Confidence 7777777777765531 2234566666666666665555422 11 11111223444 4444
Q ss_pred hhHHHHH-HHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 333 EEVSVVK-ELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 333 ~~~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
+++.... +.++. ...+..+|..+...|...|++++| .+.|++..+
T Consensus 432 ~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~a~~ 477 (514)
T 2gw1_A 432 IEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDIDEA-----ITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHH-----HHHHHHHHH
Confidence 4444333 33332 223456788889999999999999 999999887
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.61 E-value=1.1e-12 Score=127.04 Aligned_cols=253 Identities=9% Similarity=0.034 Sum_probs=194.4
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC----------------------
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP---------------------- 88 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~---------------------- 88 (425)
...|+.++|.+.|+.+.+..+.+..++..+...|.+.|+++.|...+.+++......+
T Consensus 71 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 150 (450)
T 2y4t_A 71 LAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQA 150 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999887666789999999999999999999999999987654322
Q ss_pred ------chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc
Q 042756 89 ------RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH 162 (425)
Q Consensus 89 ------~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~ 162 (425)
+.+++|...|+.+.+.+ +.+..++..+...|.+.|++++|.++|+++.+.... ...+|..+...|.+.
T Consensus 151 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~ 224 (450)
T 2y4t_A 151 LNAFGSGDYTAAIAFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND----NTEAFYKISTLYYQL 224 (450)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS----CHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHc
Confidence 24677888888887654 247788888999999999999999999998775221 234678899999999
Q ss_pred CCcccHHHHHHHHHHHhhcCCCCccC-hhHHHHH------------HHHHHhcCChhHHHHHHHHHHHcCCCCC-----H
Q 042756 163 DSKRGFDDTYARLNQLVNSSSSVYVK-RQALKSM------------ISGLCEMGQPHEAENLIEEMRVKGLEPS-----G 224 (425)
Q Consensus 163 g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~ 224 (425)
|+++ ++...+.++.... |+ ...+..+ ...|.+.|++++|.+.|+++... .|+ .
T Consensus 225 g~~~---~A~~~~~~~~~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~ 295 (450)
T 2y4t_A 225 GDHE---LSLSEVRECLKLD----QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTV 295 (450)
T ss_dssp TCHH---HHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred CCHH---HHHHHHHHHHHhC----CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHH
Confidence 9954 4444444444322 22 2244444 78889999999999999999874 454 4
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 042756 225 FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV-RTYNSVL 301 (425)
Q Consensus 225 ~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~-~t~~~ll 301 (425)
..|..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...|++..+. .|+. ..+..+-
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 578888899999999999999999887653 236789999999999999999999999998863 5654 3444443
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.55 E-value=6.3e-12 Score=117.37 Aligned_cols=294 Identities=13% Similarity=0.016 Sum_probs=211.0
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
..+..|++++|.+.|+......+.+..++..+...+...|+++.|...+.+++. .+ +
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---------------------~~--~ 68 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---------------------LK--M 68 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------HC--T
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---------------------hC--C
Confidence 345678999999999999887666788999999999999977777766666542 22 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHH------------HHHHHhcCCcccHHHHHHHHH
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL------------IDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~l------------i~~~~~~g~~~~~~~~~~~~~ 176 (425)
-+...+..+...+.+.|++++|.+.|++..+.... .......+..+ ...+...|+++ ++...+.
T Consensus 69 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~A~~~~~ 144 (359)
T 3ieg_A 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-EQEEKEAESQLVKADEMQRLRSQALDAFDGADYT---AAITFLD 144 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred CcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCc-ccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH---HHHHHHH
Confidence 25678888999999999999999999998764110 00223344444 57788899955 4555554
Q ss_pred HHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 177 QLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 177 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
+.....+ .+...+..+...+...|++++|...|++..... +.+..++..+...+...|++++|.+.|+...+..-
T Consensus 145 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~- 219 (359)
T 3ieg_A 145 KILEVCV---WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ- 219 (359)
T ss_dssp HHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHhCC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 4443321 234589999999999999999999999998753 34678999999999999999999999999887532
Q ss_pred cCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----HHHHHHHHHHHHHHHHhhccCCc
Q 042756 257 VDTVCSN------------MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT-----YNSVLNSCSTIMSMLQDLNSNDF 319 (425)
Q Consensus 257 ~~~~~yn------------~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t-----~~~ll~~~~~~~~~~~~~~~~~~ 319 (425)
.+...+. .+...+.+.|++++|...|++..+. .|+... +..+-..+...|+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A------ 291 (359)
T 3ieg_A 220 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA------ 291 (359)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH------
Confidence 2333333 2366689999999999999998875 344322 22233444444444332
Q ss_pred hhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 320 PLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
...+.+.++. ...+..+|..+...|...|++++| .+.|++..+
T Consensus 292 ---------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A-----~~~~~~a~~ 334 (359)
T 3ieg_A 292 ---------------IRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEA-----IQDYEAAQE 334 (359)
T ss_dssp ---------------HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHT
T ss_pred ---------------HHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHh
Confidence 1222333332 223566888899999999999999 999999987
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.55 E-value=1.4e-12 Score=128.49 Aligned_cols=322 Identities=9% Similarity=-0.090 Sum_probs=233.6
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
..+..|++++|.+.|+.+... .||..+|..+..++.+.|+++.|...+.+++. .+ +
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------------~~--p 70 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALEL-KEDPVFYSNLSACYVSVGDLKKVVEMSTKALE---------------------LK--P 70 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------HC--S
T ss_pred HHHHhccHHHHHHHHHHHHhc-CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhc---------------------cC--h
Confidence 345678999999999999886 47999999999999999987777777766542 22 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCc-------------------------------------------
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE------------------------------------------- 145 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~------------------------------------------- 145 (425)
-+...+..+..+|.+.|++++|.+.|+++.+......
T Consensus 71 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (514)
T 2gw1_A 71 DYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE 150 (514)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence 3566788888888888999998888888765432100
Q ss_pred --------------------------------hhHHHHHHHHHHHHH---hcCCcccHHHHHHHHHH-----HhhcCCCC
Q 042756 146 --------------------------------RELVLFYCNLIDSFC---KHDSKRGFDDTYARLNQ-----LVNSSSSV 185 (425)
Q Consensus 146 --------------------------------~~~~~~y~~li~~~~---~~g~~~~~~~~~~~~~~-----~~~~~~~~ 185 (425)
++....+......+. +.|+++.+.+.++...+ ........
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 111223333444344 38999999998888877 31111111
Q ss_pred ---ccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhH
Q 042756 186 ---YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCS 262 (425)
Q Consensus 186 ---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~y 262 (425)
..+..+|..+...+...|++++|...|++..... |+..++..+..++...|++++|.+.++...+.. +.+...|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 307 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHH
Confidence 1234699999999999999999999999998864 447899999999999999999999999998764 2367889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc---------cCCchhh---HHHHHhhc
Q 042756 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN---------SNDFPLS---ILELTEVL 330 (425)
Q Consensus 263 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~ 330 (425)
..+...|...|++++|...|++..+.. ..+...+..+...+...|+++.+.. +...... ...+...+
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Confidence 999999999999999999999998753 2356788888888888777766632 1112211 22455556
Q ss_pred chhhHHHHH-HHHhCCC-Ccc----cceeeccccchhc---ccCcchhHHHHHHHHHHHHHh
Q 042756 331 NEEEVSVVK-ELEDSSV-LDE----AMKWDSGETKLDL---HGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 331 ~~~~~~~~~-~~~~~~~-~~~----~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+++.... +.++... .++ ..+|..+...|.. .|++++| .+.|++..+
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A-----~~~~~~a~~ 443 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA-----TNLLEKASK 443 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH-----HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH-----HHHHHHHHH
Confidence 555554333 3332111 122 3378888899999 9999999 999999987
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.54 E-value=1.3e-11 Score=122.20 Aligned_cols=241 Identities=7% Similarity=-0.118 Sum_probs=127.9
Q ss_pred ChhHHHHHHHHHHHhcCCCchh----HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh
Q 042756 126 QREEAETLILETLSKLGSRERE----LVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201 (425)
Q Consensus 126 ~~~~A~~l~~~m~~~~~~~~~~----~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 201 (425)
++++|.++|+++.+.... .+. ...+|..+-..+...|+++ ++...+.+.... .|+...|..+...|..
T Consensus 217 ~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~---~A~~~~~~~~~~----~~~~~~~~~l~~~~~~ 288 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL---DAQVLLQESINL----HPTPNSYIFLALTLAD 288 (537)
T ss_dssp HHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHH----CCCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH---HHHHHHHHHHhc----CCCchHHHHHHHHHHH
Confidence 566666666665543221 111 0113444445555556633 333333333322 1333456666666666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHH
Q 042756 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLW 281 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l 281 (425)
.|++++|...|++..... +.+..+|..+...+...|++++|.+.|+...+..- .+...|..+...|...|++++|..+
T Consensus 289 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 289 KENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp SSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666665532 22355666666666666666666666666655421 1345566666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc------------cCCchhh------HHHHHhh----------cchh
Q 042756 282 LQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN------------SNDFPLS------ILELTEV----------LNEE 333 (425)
Q Consensus 282 ~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~------------~~~~~~~------~~~~~~~----------~~~~ 333 (425)
|++..+.. ..+...+..+...+...|++..+.. ...+..+ ...+... +..+
T Consensus 367 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 445 (537)
T 3fp2_A 367 FNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFN 445 (537)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHH
T ss_pred HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHH
Confidence 66665432 2233455555555555555544422 1111111 0122222 3333
Q ss_pred hHHHH-HHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 334 EVSVV-KELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 334 ~~~~~-~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
++... .+.++. ...+..+|..+...|...|++++| .+.|++..+
T Consensus 446 ~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~al~ 490 (537)
T 3fp2_A 446 AAIKLLTKACEL-DPRSEQAKIGLAQLKLQMEKIDEA-----IELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccHHHH-----HHHHHHHHH
Confidence 33333 333332 223456788899999999999999 999999887
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.51 E-value=7.7e-12 Score=115.51 Aligned_cols=251 Identities=10% Similarity=-0.053 Sum_probs=177.2
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
......|++++|.++|+.+....+.+...+..+...+...|+.+.|...+.+++. .+
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---------------------~~-- 86 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---------------------LY-- 86 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------HC--
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---------------------hC--
Confidence 4445678999999999999877555666777788888888877766666666543 22
Q ss_pred ccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 108 QWNPKLVAEIIAFLDKQG-QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
+-+...+..+...+...| ++++|.+.|++..+... .....|..+...+...|+++.+.+.++...+..+.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----- 157 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK----TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----- 157 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT----TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-----
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC----ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-----
Confidence 124566777888888888 88888888888776422 11235777888888888855444444444443222
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--------CCcC
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--------TRVD 258 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--------~~~~ 258 (425)
+...+..+...|...|++++|.+.|++..+.. +.+..++..+...+.+.|++++|.+.|+...+.. ...+
T Consensus 158 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 158 -CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred -cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 23467778888888888888888888887753 3356788888888888888888888888776531 1234
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 259 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
..+|..+...|...|++++|...|++..+.. ..+...+..+-..+...|+..++
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHH
Confidence 5788888888888888888888888887642 22456677777777666665444
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.51 E-value=6.1e-12 Score=118.53 Aligned_cols=251 Identities=9% Similarity=-0.080 Sum_probs=184.8
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
......|++++|.+.|+.+....+.+..+|..+...+...|+++.|...+.+++ ..+
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---------------------~~~-- 129 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL---------------------ELQ-- 129 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------hcC--
Confidence 445667899999999999988766689999999999999997777776666654 222
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHH----------HHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 042756 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELV----------LFYCNLIDSFCKHDSKRGFDDTYARLNQ 177 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~----------~~y~~li~~~~~~g~~~~~~~~~~~~~~ 177 (425)
+.+..++..+...|.+.|++++|.+.|+++.+. .+... ..+..+...+.+.|+++ ++...+.+
T Consensus 130 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~ 202 (365)
T 4eqf_A 130 PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLE---GVKELYLE 202 (365)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHCC-------------------CCHHHH---HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh----CccchHHHhhhccchHHHHHHHHHHhhhhhHH---HHHHHHHH
Confidence 135778999999999999999999999998764 11111 12334577888888854 45555555
Q ss_pred HhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 178 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
.....+. .++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|.+.|+...+.. +.
T Consensus 203 al~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~ 279 (365)
T 4eqf_A 203 AAHQNGD-MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PG 279 (365)
T ss_dssp HHHHSCS-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHhCcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 5443321 1246699999999999999999999999998853 3357899999999999999999999999988763 23
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC--------CHHHHHHHHHHHHHHHHHH
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG---IPF--------SVRTYNSVLNSCSTIMSML 311 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g---~~p--------d~~t~~~ll~~~~~~~~~~ 311 (425)
+..+|..+...|.+.|++++|...|++..+.. ..| +...|..+-.++...|+.+
T Consensus 280 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 280 FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 58899999999999999999999999987521 111 2456677766666655543
No 17
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.49 E-value=1.6e-12 Score=122.47 Aligned_cols=270 Identities=9% Similarity=-0.053 Sum_probs=185.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+...+..+...+.+.|+++.|...+.+++ ..+ +.+..++..+...|.+.|++++|.+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al---------------------~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 120 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAI---------------------LQD--PGDAEAWQFLGITQAENENEQAAIV 120 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHH---------------------HHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------HhC--cCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34457777777777776666555555543 332 2367889999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc----cChhHHHHHHHHHHhcCChhHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY----VKRQALKSMISGLCEMGQPHEA 208 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----p~~~~~~~li~~~~~~g~~~~a 208 (425)
.|++..+.. |....+|..+...|.+.|+++++.+.++...+..+...... .....++.+...+.+.|++++|
T Consensus 121 ~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 196 (365)
T 4eqf_A 121 ALQRCLELQ----PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGV 196 (365)
T ss_dssp HHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHH
T ss_pred HHHHHHhcC----CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHH
Confidence 999988752 22234788999999999996655555555544432211110 0112445568899999999999
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 209 ENLIEEMRVKGLE-PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 209 ~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.++|+++....-. ++..++..+...|.+.|++++|.+.|+...+.. +.+..+|+.+...|...|++++|...|++..+
T Consensus 197 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 275 (365)
T 4eqf_A 197 KELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275 (365)
T ss_dssp HHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999986321 258899999999999999999999999988764 23688999999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCC--------cccceeeccccc
Q 042756 288 SGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVL--------DEAMKWDSGETK 359 (425)
Q Consensus 288 ~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~li~~ 359 (425)
.. ..+..++..+...|...|+..++.. ....+.++...... .+..+|..+-.+
T Consensus 276 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~------------------~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 336 (365)
T 4eqf_A 276 IQ-PGFIRSRYNLGISCINLGAYREAVS------------------NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIA 336 (365)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCCHHHHH------------------HHHHHHHHHHCC------------CHHHHHHHHH
T ss_pred cC-CCchHHHHHHHHHHHHCCCHHHHHH------------------HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHH
Confidence 52 2246788888888888877766532 11111111111111 135678888888
Q ss_pred hhcccCcchh
Q 042756 360 LDLHGMHLGS 369 (425)
Q Consensus 360 ~~~~~~~~~a 369 (425)
+...|+.+.+
T Consensus 337 ~~~~g~~~~a 346 (365)
T 4eqf_A 337 LSLMDQPELF 346 (365)
T ss_dssp HHHHTCHHHH
T ss_pred HHHcCcHHHH
Confidence 9989987776
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=2.4e-12 Score=121.10 Aligned_cols=289 Identities=9% Similarity=-0.051 Sum_probs=195.2
Q ss_pred hhHHHHHH-HHHHhHHh--cCC--CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 34 RLTKQGQR-FLSSLALA--VTR--DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 34 ~~~~~a~~-~~~~m~~~--~~~--d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
+.++.|.+ .|+..... -.| +...+..+...+.+.|+++.|...+.+++ +.+ +
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al---------------------~~~--p 95 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV---------------------QQD--P 95 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HSC--T
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH---------------------HhC--C
Confidence 45555665 55543333 111 34556667777777776555555555543 332 2
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.+..++..+...+.+.|++++|.+.|++..+... ....++..+...|...|+++ ++...+.+.....+.. +
T Consensus 96 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~-~- 166 (368)
T 1fch_A 96 KHMEAWQYLGTTQAENEQELLAISALRRCLELKP----DNQTALMALAVSFTNESLQR---QACEILRDWLRYTPAY-A- 166 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHTSTTT-G-
T ss_pred CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCcCc-H-
Confidence 3677888899999999999999999999887532 22346888999999999955 4555554444332111 1
Q ss_pred hhHHHH---------------HHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 189 RQALKS---------------MISGLCEMGQPHEAENLIEEMRVKGLE-PSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 189 ~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..+.. .+..+...|++++|...|+++....-. ++..++..+...|.+.|++++|...|+...+
T Consensus 167 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 167 -HLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp -GGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12211 244444899999999999999885321 1588999999999999999999999999887
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcch
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE 332 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (425)
.. +.+..+|+.+...|...|++++|...|+++.+.. ..+...+..+...|.+.|+...+..
T Consensus 246 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~----------------- 306 (368)
T 1fch_A 246 VR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVE----------------- 306 (368)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH-----------------
T ss_pred hC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHH-----------------
Confidence 53 2357899999999999999999999999988752 3356788888888888888766532
Q ss_pred hhHHHHHHHHhCCC-------CcccceeeccccchhcccCcchhHHHHHHHHHHH
Q 042756 333 EEVSVVKELEDSSV-------LDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDE 380 (425)
Q Consensus 333 ~~~~~~~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 380 (425)
....+.++..... .....+|..+..+|...|+.++| ..++.+
T Consensus 307 -~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~ 355 (368)
T 1fch_A 307 -HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY-----GAADAR 355 (368)
T ss_dssp -HHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH-----HHHHTT
T ss_pred -HHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH-----HHhHHH
Confidence 1111111111110 11246799999999999999999 766653
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.48 E-value=3.3e-12 Score=117.99 Aligned_cols=271 Identities=10% Similarity=0.010 Sum_probs=197.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHH
Q 042756 51 TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEA 130 (425)
Q Consensus 51 ~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 130 (425)
+.+...+..+...+...|+++.|..++.+++ ..+. .+...+..+...+.+.|++++|
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---------------------~~~p--~~~~~~~~~~~~~~~~~~~~~A 75 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVM---------------------EKDP--FHASCLPVHIGTLVELNKANEL 75 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHCT--TCTTTHHHHHHHHHHHTCHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HcCC--CChhhHHHHHHHHHHhhhHHHH
Confidence 4455566667777777776555555555543 3332 2344566677888999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcC-CcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHH
Q 042756 131 ETLILETLSKLGSRERELVLFYCNLIDSFCKHD-SKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209 (425)
Q Consensus 131 ~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 209 (425)
.++++++.+.... . ...|..+...+...| + .+++...+.+.....+ .+...|..+...+...|++++|.
T Consensus 76 ~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~---~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 76 FYLSHKLVDLYPS-N---PVSWFAVGCYYLMVGHK---NEHARRYLSKATTLEK---TYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHHHHHHHHCTT-S---THHHHHHHHHHHHSCSC---HHHHHHHHHHHHTTCT---TCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhCcC-C---HHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHccCHHHHH
Confidence 9999999875222 2 236778889999999 7 4555555555543321 13458999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 210 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
+.|++..+.. +.+...+..+...|...|++++|.+.++...+.. +.+...|+.+...|...|++++|...|++..+..
T Consensus 146 ~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 146 AAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 9999998863 2245677779999999999999999999998764 3467899999999999999999999999987531
Q ss_pred --------CCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchh
Q 042756 290 --------IPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLD 361 (425)
Q Consensus 290 --------~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~ 361 (425)
...+..++..+...+...|+++.+.. .+.+.++. ...+...|..+...|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---------------------~~~~a~~~-~~~~~~~~~~la~~~~ 281 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD---------------------YHRQALVL-IPQNASTYSAIGYIHS 281 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHH---------------------HHHHHHHH-STTCSHHHHHHHHHHH
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHH---------------------HHHHHHhh-CccchHHHHHHHHHHH
Confidence 12335677888888777777655422 22222222 1235667888899999
Q ss_pred cccCcchhHHHHHHHHHHHHHh
Q 042756 362 LHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..|++++| .+.|++..+
T Consensus 282 ~~g~~~~A-----~~~~~~al~ 298 (330)
T 3hym_B 282 LMGNFENA-----VDYFHTALG 298 (330)
T ss_dssp HHTCHHHH-----HHHHHTTTT
T ss_pred HhccHHHH-----HHHHHHHHc
Confidence 99999999 999998765
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.44 E-value=2.2e-11 Score=112.22 Aligned_cols=251 Identities=9% Similarity=-0.075 Sum_probs=189.4
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
......|++++|.++|+.+.+..+.+..++..+...+...|+++.|...+.+++ +.+
T Consensus 29 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---------------------~~~-- 85 (327)
T 3cv0_A 29 LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHAR---------------------MLD-- 85 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------hcC--
Confidence 445667899999999999988766688999999999999997777776666653 222
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHH--------------HH-HHHhcCCcccHHHHH
Q 042756 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNL--------------ID-SFCKHDSKRGFDDTY 172 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~l--------------i~-~~~~~g~~~~~~~~~ 172 (425)
+.+..++..+...+...|++++|.+.|++..+...... . .+..+ .. .+...|+ .+++.
T Consensus 86 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~ 158 (327)
T 3cv0_A 86 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE-Q---LGSVNLQADVDIDDLNVQSEDFFFAAPNE---YRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTT-T---C--------------------CCTTSHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-H---HHHHHhHHHHHHHHHHHHHHhHHHHHccc---HHHHH
Confidence 23677888899999999999999999999887532211 1 22222 11 2555666 45555
Q ss_pred HHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..+.+.....+ .+...+..+...|.+.|++++|.+.|++..+.. +.+..++..+...+.+.|++++|.+.|+...+
T Consensus 159 ~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 159 TLLHAALEMNP---NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCC---CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555544321 245699999999999999999999999998763 33578999999999999999999999999887
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHHHHHHHHh
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-----------SVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-----------d~~t~~~ll~~~~~~~~~~~~ 313 (425)
.. +.+..+|..+...|...|++++|.+.|++..+..-.. +..++..+..++.+.|+.+.+
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH
Confidence 54 2367899999999999999999999999987642111 356777888888877777665
No 21
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.44 E-value=3e-10 Score=105.85 Aligned_cols=262 Identities=10% Similarity=0.008 Sum_probs=193.7
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCC---C------------------
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDT---T------------------ 86 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~---~------------------ 86 (425)
......|++++|.+.|+......+-+...|..+...+...|+++.|...+.+.+.... .
T Consensus 45 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 45 TVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHH
Confidence 3445677999999999998877555789999999999999999999999999987654 1
Q ss_pred -------CCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 042756 87 -------HPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSF 159 (425)
Q Consensus 87 -------~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~ 159 (425)
..+.+++|.+.|++..+... .+...+..+...+.+.|++++|.+.|++..+.. +.....+..+...+
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV--WDAELRELRAECFIKEGEPRKAISDLKAASKLK----SDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----SCCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 12346778888888776542 467788889999999999999999999987642 22234678888889
Q ss_pred HhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH------------HHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H--
Q 042756 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK------------SMISGLCEMGQPHEAENLIEEMRVKGLEPS-G-- 224 (425)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-- 224 (425)
...|+++.+.+.++...+..+.. ...+. .+...+.+.|++++|...|++..... |+ .
T Consensus 199 ~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~ 270 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKLDQDH------KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY 270 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH
Confidence 99999554444444444332111 11232 23666888999999999999988753 33 2
Q ss_pred --HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 042756 225 --FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNSVL 301 (425)
Q Consensus 225 --~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll 301 (425)
..+..+..++.+.|++++|.+.++...+.. +.+..+|..+...|...|++++|...|++..+. .|+ ...+..+.
T Consensus 271 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 347 (359)
T 3ieg_A 271 TVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLE 347 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHH
Confidence 235557788999999999999999888753 236788999999999999999999999998865 455 44555555
Q ss_pred HHHHH
Q 042756 302 NSCST 306 (425)
Q Consensus 302 ~~~~~ 306 (425)
.+...
T Consensus 348 ~~~~~ 352 (359)
T 3ieg_A 348 KAQRL 352 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.43 E-value=3.9e-11 Score=112.76 Aligned_cols=253 Identities=8% Similarity=-0.062 Sum_probs=192.1
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
......|++++|.+.|+.+.+..+.+..+|..+...+...|+++.|...+.+++. .+
T Consensus 72 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------~~-- 128 (368)
T 1fch_A 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE---------------------LK-- 128 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HC--
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHh---------------------cC--
Confidence 4446678999999999999887666889999999999999977777776666542 22
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHH---------------HHHHHHhcCCcccHHHHH
Q 042756 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN---------------LIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~---------------li~~~~~~g~~~~~~~~~ 172 (425)
+.+..++..+...|...|++++|.+.|+++.+...... . .+.. .+..+...|++ +++.
T Consensus 129 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~ 201 (368)
T 1fch_A 129 PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA-H---LVTPAEEGAGGAGLGPSKRILGSLLSDSLF---LEVK 201 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG-G---GCC---------------CTTHHHHHHHHH---HHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-H---HHHHHHHHhhhhcccHHHHHHHHHhhcccH---HHHH
Confidence 23677899999999999999999999999887532211 1 1111 23334477774 4555
Q ss_pred HHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 173 ARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 173 ~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..+.+.....+. .++..+|..+...|.+.|++++|...|++..... +.+..+|..+...+.+.|++++|.+.|+...+
T Consensus 202 ~~~~~a~~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 202 ELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHHHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555443321 1246799999999999999999999999998852 33578999999999999999999999999887
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC-------CHHHHHHHHHHHHHHHHHHHh
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG---IPF-------SVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g---~~p-------d~~t~~~ll~~~~~~~~~~~~ 313 (425)
.. +.+..+|..+...|.+.|++++|...|++..+.. ..| ...+|..+..+|...|+.+.+
T Consensus 280 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 280 LQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 53 2367899999999999999999999999987531 111 157888888888888776654
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.40 E-value=9.3e-14 Score=131.47 Aligned_cols=179 Identities=13% Similarity=0.068 Sum_probs=65.8
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+++|.+.++++..+ .+|..+..++.+.|++++|.+.|.+. +. ...|..++.++...|+++++.
T Consensus 18 ~ld~A~~fae~~~~~-------~vWs~La~A~l~~g~~~eAIdsfika------~D---~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 18 NLDRAYEFAERCNEP-------AVWSQLAKAQLQKGMVKEAIDSYIKA------DD---PSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHcC------CC---HHHHHHHHHHHHhCCCHHHHH
Confidence 578888888887432 36777999999999999999999653 12 236889999999999965544
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
..++..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|..+|..
T Consensus 82 ~yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~ 147 (449)
T 1b89_A 82 KYLQMARKK-------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 147 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHH
T ss_pred HHHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333331 2345589999999999999999999885 48888999999999999999999999997
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
+ ..|+.|+.++.+.|++++|++.+.++ -+..||..++.+|...|+++.+
T Consensus 148 a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA 196 (449)
T 1b89_A 148 V---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA 196 (449)
T ss_dssp T---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH
T ss_pred h---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH
Confidence 6 36999999999999999999999998 2789999999999999998887
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.40 E-value=3.6e-13 Score=127.47 Aligned_cols=269 Identities=11% Similarity=0.041 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCC--------CCCchhhhHHHHHHHhhhcC
Q 042756 34 RLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDT--------THPRLSSLAFPLYMRITEES 105 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~--------~~~~~~~~a~~lf~~m~~~~ 105 (425)
|++++|.++++++ ++..+|..|..++.+.|+...|.+.|++.-...+ ...+.+++|++.++...+ .
T Consensus 17 ~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~ 90 (449)
T 1b89_A 17 GNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARK-K 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-h
Confidence 5688899999987 3345999999999999988888877766411110 012345555553333322 1
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCC
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSV 185 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 185 (425)
.+++.+.+.++.+|.+.|+++++.++++. |. ..+|..+.+.|...|.++.+...+...
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn---~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------- 148 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFING-------PN---NAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 148 (449)
T ss_dssp --------------------CHHHHTTTTTC-------C-------------------CTTTHHHHHHHT----------
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHcC-------Cc---HHHHHHHHHHHHHcCCHHHHHHHHHHh----------
Confidence 13345555566666666666665555531 11 124556666666666644444333321
Q ss_pred ccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHH
Q 042756 186 YVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMV 265 (425)
Q Consensus 186 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~l 265 (425)
..|..+..++.+.|++++|.+.+.++ -++.+|..++.+|+..|+++.|......+. +.|+ -...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHH
Confidence 15666666666666666666666655 145566666666666666666644333211 1222 23345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHH-hC
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELE-DS 344 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 344 (425)
+..|.+.|++++|..+|+...... .--...|.-|--.|++ ...+....-.+.+ .+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k-----------------------y~p~k~~ehl~~~~~~ 269 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK-----------------------FKPQKMREHLELFWSR 269 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT-----------------------TCHHHHHHHHHHHSTT
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh-----------------------cCHHHHHHHHHHHHHH
Confidence 556666666666666666544221 1122233333222222 1122222222222 22
Q ss_pred CCCc-------ccceeeccccchhcccCcchh
Q 042756 345 SVLD-------EAMKWDSGETKLDLHGMHLGS 369 (425)
Q Consensus 345 ~~~~-------~~~~~~~li~~~~~~~~~~~a 369 (425)
...| +...|.-+.--|...++++.|
T Consensus 270 ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 270 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 2222 467888888889999999888
No 25
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.39 E-value=6.2e-11 Score=108.36 Aligned_cols=238 Identities=10% Similarity=0.015 Sum_probs=171.3
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHhcCCC--HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 27 LVQCLTARLTKQGQRFLSSLALAVTRD--SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~~~~d--~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
+.+.+..|....|++.++..... .|+ ....-.+.++|...|+++.+...+.. .
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~-~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~------------------------~ 60 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS-SPERDVERDVFLYRAYLAQRKYGVVLDEIKP------------------------S 60 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHhcccC-CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc------------------------c
Confidence 56677888999999988775432 333 34556678889998877766653322 1
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS 184 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 184 (425)
-.|+..++..+...+...|+.++|.+.++++......|.. ...+..+-..+.+.|+ .+++...+.+
T Consensus 61 --~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~--~~~~~~la~~~~~~g~---~~~Al~~l~~------- 126 (291)
T 3mkr_A 61 --SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN--TTFLLMAASIYFYDQN---PDAALRTLHQ------- 126 (291)
T ss_dssp --SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC--HHHHHHHHHHHHHTTC---HHHHHHHHTT-------
T ss_pred --CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC--HHHHHHHHHHHHHCCC---HHHHHHHHhC-------
Confidence 2356778888888899999999999999998765422222 2245667788889999 5556665554
Q ss_pred CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh
Q 042756 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY---KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC 261 (425)
Q Consensus 185 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty---~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~ 261 (425)
..+...+..+...|.+.|++++|.+.|+++.+.. |+..-+ ...+..+...|++++|..+|+++.+. .+.+...
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~ 202 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLL 202 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHH
Confidence 1344588889999999999999999999998863 653211 22334455668999999999999876 3457888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHH
Q 042756 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 262 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~ 309 (425)
|+.+..+|.+.|++++|+..|++..+. .| +..++..+...+...|+
T Consensus 203 ~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 203 LNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999998764 34 55677777766665444
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.37 E-value=3.1e-11 Score=111.23 Aligned_cols=253 Identities=8% Similarity=-0.114 Sum_probs=178.6
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.+++|..+|+++.+.+ +-+...+..+...+.+.|++++|.+.|++..+... ....++..+...|...|+++.+.
T Consensus 36 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~ 109 (327)
T 3cv0_A 36 NLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP----KDIAVHAALAVSHTNEHNANAAL 109 (327)
T ss_dssp CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444444444444433 13677888899999999999999999999887622 22346788999999999955544
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHH--------------HH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSM--------------IS-GLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY 234 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 234 (425)
+.++...+..+.. ...+..+ .. .+...|++++|.+.|++..+.. +.+..++..+...|
T Consensus 110 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 110 ASLRAWLLSQPQY------EQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHTSTTT------TTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcc------HHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 4444444332221 1133333 22 3778899999999999998863 33678999999999
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q 042756 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~ 314 (425)
.+.|++++|.++++...+.. +.+..+|..+...|...|++++|...|++..+.. ..+..++..+...+...|+.+.+.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999988764 2367899999999999999999999999988753 235677777777777777765542
Q ss_pred ccCCchhhHHHHHhhcchhhHHHHHHHHhCCCC-----------cccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 315 NSNDFPLSILELTEVLNEEEVSVVKELEDSSVL-----------DEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
. .+.+.++.... .+..+|..+...|...|+.++| ..++++..+
T Consensus 261 ~---------------------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-----~~~~~~~l~ 314 (327)
T 3cv0_A 261 K---------------------QLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLV-----ELTYAQNVE 314 (327)
T ss_dssp H---------------------HHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHH-----HHHTTCCSH
T ss_pred H---------------------HHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHHH
Confidence 2 12222221111 1466888899999999999999 777765443
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.37 E-value=4.9e-11 Score=109.03 Aligned_cols=244 Identities=12% Similarity=-0.010 Sum_probs=174.7
Q ss_pred hhhhHHHHHHHhhhcCCCccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCccc
Q 042756 90 LSSLAFPLYMRITEESWFQWNP--KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRG 167 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~ 167 (425)
.+..|+..++.... ..|+. .....+..+|...|+++.|..-++.. .++...++..+...+...++
T Consensus 14 ~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~~~~~a~~~la~~~~~~~~--- 80 (291)
T 3mkr_A 14 SYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SAPELQAVRMFAEYLASHSR--- 80 (291)
T ss_dssp CHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SCHHHHHHHHHHHHHHCSTT---
T ss_pred HHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CChhHHHHHHHHHHHcCCCc---
Confidence 44455555444322 22333 24455788999999999998766441 22235577888899999988
Q ss_pred HHHHHHHHHHHhhcCCCCccC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVK-RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
.+++.+.+.++.... ..|+ ...+..+-..+...|++++|++.|++ ..+...+..+...+.+.|++++|.+.
T Consensus 81 ~~~A~~~l~~ll~~~--~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 81 RDAIVAELDREMSRS--VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp HHHHHHHHHHHHHSC--CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 667777777766543 2343 34666777999999999999999998 46788999999999999999999999
Q ss_pred HHHHHHCCCCcCHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhH
Q 042756 247 VNQMESDGTRVDTVCS---NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323 (425)
Q Consensus 247 ~~~m~~~g~~~~~~~y---n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 323 (425)
|+.+.+.. |+.... ..++..+...|++++|..+|+++.+. ...+...++.+-.++.+.|+++.+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~--------- 220 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE--------- 220 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH---------
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH---------
Confidence 99998763 554322 22334445569999999999999876 3557788888888888888875542
Q ss_pred HHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 324 LELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+.+.++.. .-+..+|+.++..+...|+.++++ .++++++.+
T Consensus 221 ------------~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa----~~~~~~~~~ 263 (291)
T 3mkr_A 221 ------------GVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVT----NRYLSQLKD 263 (291)
T ss_dssp ------------HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHH----HHHHHHHHH
T ss_pred ------------HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHH----HHHHHHHHH
Confidence 2233333322 235567888888899999997752 688888876
No 28
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.34 E-value=3.2e-10 Score=112.25 Aligned_cols=300 Identities=9% Similarity=-0.061 Sum_probs=203.2
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
.....|++++|.+.|+......+.+..+|..+...+.+.|+++.|...+.+++..+ +
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----------------------p 90 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-----------------------P 90 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------------T
T ss_pred HHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----------------------C
Confidence 34556788889999999988766689999999999999998877777777765322 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC------------------------------------CCchhHHH--
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLG------------------------------------SRERELVL-- 150 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~------------------------------------~~~~~~~~-- 150 (425)
.+...+..+...+.+.|++++|.+.|+.+..... .+......
T Consensus 91 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 170 (537)
T 3fp2_A 91 DHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHH
Confidence 2455666666667777777777776643311100 00000000
Q ss_pred -------------------------HHHHHHHHHHhc-CCc----ccHHHHHHHHHHHhhcCCCCccC-----hhHHHHH
Q 042756 151 -------------------------FYCNLIDSFCKH-DSK----RGFDDTYARLNQLVNSSSSVYVK-----RQALKSM 195 (425)
Q Consensus 151 -------------------------~y~~li~~~~~~-g~~----~~~~~~~~~~~~~~~~~~~~~p~-----~~~~~~l 195 (425)
....+...+... +++ ....++...+.+.....+.. ++ ..+|..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~-~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 171 FGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD-DPLRENAALALCYT 249 (537)
T ss_dssp HHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC-HHHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc-chhhHHHHHHHHHH
Confidence 111111111111 000 02455666666665433211 11 2367777
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
-..+...|++++|.+.|++.... .|+..++..+...+...|++++|.+.|+...+..- .+..+|..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCH
Confidence 88899999999999999999985 56788999999999999999999999999887542 3678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcccceeec
Q 042756 276 SRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDEAMKWDS 355 (425)
Q Consensus 276 ~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (425)
++|...|++..+.. .-+...+..+...+...|+++.+. ..+.+.++. ...+...|..
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~---------------------~~~~~~~~~-~~~~~~~~~~ 383 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE---------------------AFFNETKLK-FPTLPEVPTF 383 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH---------------------HHHHHHHHH-CTTCTHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH---------------------HHHHHHHHh-CCCChHHHHH
Confidence 99999999998753 224567777777777766665542 122233322 2234567888
Q ss_pred cccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 356 GETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 356 li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
+...|...|++++| .+.|+++.+
T Consensus 384 l~~~~~~~g~~~~A-----~~~~~~a~~ 406 (537)
T 3fp2_A 384 FAEILTDRGDFDTA-----IKQYDIAKR 406 (537)
T ss_dssp HHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHhCCHHHH-----HHHHHHHHH
Confidence 88999999999999 999999887
No 29
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.32 E-value=9.7e-10 Score=95.23 Aligned_cols=215 Identities=11% Similarity=-0.020 Sum_probs=161.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+...+..+...+...|+++.|...+.+++ +.. +.+...+..+...|...|++++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~---------------------~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 63 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDAL---------------------KSD--PKNELAWLVRAEIYQYLKVNDKAQE 63 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHH---------------------HhC--ccchHHHHHHHHHHHHcCChHHHHH
Confidence 45677777888888886666666665543 322 1356788889999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENL 211 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 211 (425)
.|++..+... ....++..+...+... |+ .+++...+.+... .+....+...|..+..++.+.|++++|.+.
T Consensus 64 ~~~~a~~~~~----~~~~~~~~l~~~~~~~~~~---~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 135 (225)
T 2vq2_A 64 SFRQALSIKP----DSAEINNNYGWFLCGRLNR---PAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAY 135 (225)
T ss_dssp HHHHHHHHCT----TCHHHHHHHHHHHHTTTCC---HHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhCC----CChHHHHHHHHHHHHhcCc---HHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999887522 1234678889999999 99 4555555555554 111112356889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 042756 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP 291 (425)
Q Consensus 212 ~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~ 291 (425)
|++..+.. +.+...+..+...+.+.|++++|.++++...+..-..+...+..+...+...|+.++|..+++.+.+. .
T Consensus 136 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~ 212 (225)
T 2vq2_A 136 LKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--F 212 (225)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--C
Confidence 99998753 23478899999999999999999999999887542246778888888899999999999999998754 4
Q ss_pred CCHHHHHHHH
Q 042756 292 FSVRTYNSVL 301 (425)
Q Consensus 292 pd~~t~~~ll 301 (425)
|+...+..++
T Consensus 213 p~~~~~~~~l 222 (225)
T 2vq2_A 213 PYSEELQTVL 222 (225)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHh
Confidence 6655554443
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.31 E-value=1.8e-10 Score=100.36 Aligned_cols=200 Identities=11% Similarity=-0.038 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHH
Q 042756 51 TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEA 130 (425)
Q Consensus 51 ~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 130 (425)
+++...+..+-..+.+.|+++.|...+.+.+.. + +-++..+..+-..+.+.|++++|
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---------------------~--p~~~~a~~~lg~~~~~~g~~~~A 58 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE---------------------N--PQDPEALYWLARTQLKLGLVNPA 58 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---------------------S--SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------C--CCCHHHHHHHHHHHHHcCCHHHH
Confidence 456677778888888888766666666665433 2 13677888889999999999999
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc-----------CCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHH
Q 042756 131 ETLILETLSKLGSRERELVLFYCNLIDSFCKH-----------DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGL 199 (425)
Q Consensus 131 ~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 199 (425)
.+.|++..+.. |+....+..+-..+.+. |+++ ++...+.+.....+. +...|..+-..|
T Consensus 59 ~~~~~~al~~~----P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~---~A~~~~~~al~~~P~---~~~~~~~lg~~~ 128 (217)
T 2pl2_A 59 LENGKTLVART----PRYLGGYMVLSEAYVALYRQAEDRERGKGYLE---QALSVLKDAERVNPR---YAPLHLQRGLVY 128 (217)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH---HHHHHHHHHHHHCTT---CHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCcHHHHHHHHHHHHHhhhhhhhhcccccCHH---HHHHHHHHHHHhCcc---cHHHHHHHHHHH
Confidence 99999987752 22234677788888888 8844 444444444332211 235888888899
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHH
Q 042756 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMV 279 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~ 279 (425)
...|++++|+..|++..+.. .+...+..+-.+|...|++++|...|+...+.. +-+...+..+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 129 ALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------
T ss_pred HHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999999999998877 678888999999999999999999999887753 235778888889999999999999
Q ss_pred HHHHHHH
Q 042756 280 LWLQKMK 286 (425)
Q Consensus 280 ~l~~~M~ 286 (425)
..|++..
T Consensus 206 ~~~~~~~ 212 (217)
T 2pl2_A 206 RAAALEH 212 (217)
T ss_dssp -------
T ss_pred HHHHHHh
Confidence 8887754
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.30 E-value=2.9e-09 Score=94.29 Aligned_cols=211 Identities=10% Similarity=0.029 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 042756 54 SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETL 133 (425)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 133 (425)
...|..+...+...|+++.|...+.+++ ..+ +.+...+..+...|.+.|++++|.+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al---------------------~~~--~~~~~~~~~la~~~~~~~~~~~A~~~ 93 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKAL---------------------EID--PSSADAHAALAVVFQTEMEPKLADEE 93 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHH---------------------HHC--TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHH---------------------hcC--CChHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4566777777888886666666655543 222 23677888899999999999999999
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc-ChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 134 ILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV-KRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 134 ~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
|++..+.... ....+..+...|...|+ .+++...+.+..... ..| +...|..+...+.+.|++++|.+.|
T Consensus 94 ~~~a~~~~~~----~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 164 (252)
T 2ho1_A 94 YRKALASDSR----NARVLNNYGGFLYEQKR---YEEAYQRLLEASQDT--LYPERSRVFENLGLVSLQMKKPAQAKEYF 164 (252)
T ss_dssp HHHHHHHCTT----CHHHHHHHHHHHHHTTC---HHHHHHHHHHHTTCT--TCTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHCcC----cHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhCc--cCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998875321 23467888999999999 556666666665411 223 4568899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
++..+.. +.+...+..+...+.+.|++++|..+++...+.. ..+...+..+...|...|+.++|.++++++.+. .|
T Consensus 165 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p 240 (252)
T 2ho1_A 165 EKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YP 240 (252)
T ss_dssp HHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred HHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CC
Confidence 9998863 2357889999999999999999999999988753 346788999999999999999999999999875 46
Q ss_pred CHHHHHHH
Q 042756 293 SVRTYNSV 300 (425)
Q Consensus 293 d~~t~~~l 300 (425)
+...+..+
T Consensus 241 ~~~~~~~~ 248 (252)
T 2ho1_A 241 GSLEYQEF 248 (252)
T ss_dssp TSHHHHHH
T ss_pred CCHHHHHH
Confidence 55544433
No 32
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.27 E-value=6.3e-10 Score=99.82 Aligned_cols=243 Identities=9% Similarity=-0.039 Sum_probs=176.4
Q ss_pred HhhHHHHHHHHHHhHHh-c---CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 33 ARLTKQGQRFLSSLALA-V---TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~-~---~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
.+++++|.+.|+.+.+. . +.+..+|..+...+...|+++.|...+.+++ ..+ +
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---------------------~~~--~ 74 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL---------------------AIR--P 74 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--C
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH---------------------HcC--C
Confidence 47899999999999876 1 1256788888999999887777766666654 222 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.+..++..+...|...|++++|.+.|++..+.... . ..++..+...|.+.|++++ +...+.+.... .|+
T Consensus 75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~---~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~----~~~ 143 (275)
T 1xnf_A 75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-Y---NYAHLNRGIALYYGGRDKL---AQDDLLAFYQD----DPN 143 (275)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C---THHHHHHHHHHHHTTCHHH---HHHHHHHHHHH----CTT
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc-c---cHHHHHHHHHHHHhccHHH---HHHHHHHHHHh----CCC
Confidence 36788999999999999999999999999875322 2 2367889999999999554 44444444432 233
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc---CHHhHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV---DTVCSNMV 265 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~yn~l 265 (425)
...+...+..+...|++++|...|++..... .++...+. +...+...++.++|.+.+....+..... +..+|..+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 144 DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 3355556666677899999999998887752 33444444 7777888899999999999887642211 26889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN 315 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~ 315 (425)
...|...|++++|...|++..+. .|+. +.....++...|++.+++.
T Consensus 222 a~~~~~~g~~~~A~~~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 222 GKYYLSLGDLDSATALFKLAVAN--NVHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999875 4533 2223446667777766643
No 33
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.24 E-value=1.3e-09 Score=96.62 Aligned_cols=191 Identities=11% Similarity=-0.016 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
+..+..+...+...|++++|.+.|++..+... .....+..+...|.+.|+++++.+.++...+. .+ .+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~---~~~~ 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP----SSADAHAALAVVFQTEMEPKLADEEYRKALAS---DS---RNAR 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---TCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---Cc---CcHH
Confidence 56788888999999999999999999887522 22346788999999999955555444444443 21 2345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.|..+...|...|++++|.++|++....+..| +...+..+...+.+.|++++|.+.|+...+.. +.+...|..+...|
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLL 185 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 89999999999999999999999998854556 46688889999999999999999999988764 23688899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
...|++++|..+|++..+.. ..+...+..+...+...|+.+.+
T Consensus 186 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 228 (252)
T 2ho1_A 186 YKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTA 228 (252)
T ss_dssp HHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHH
Confidence 99999999999999988653 34566677777777766666554
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.22 E-value=1.8e-09 Score=93.49 Aligned_cols=190 Identities=7% Similarity=-0.021 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++..+..+...+...|++++|.+.|++..+.... . ...+..+...|...|+++.+.+.++...+. .+ .+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~---~~~ 76 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-N---ELAWLVRAEIYQYLKVNDKAQESFRQALSI---KP---DSA 76 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---TCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-c---hHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC---CCh
Confidence 5667888899999999999999999998875321 2 336788999999999955544444444433 21 234
Q ss_pred hHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 190 QALKSMISGLCEM-GQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 190 ~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
.+|..+...|... |++++|.+.|+++.+.+..|+ ...+..+..++.+.|++++|.+.|+...+..- .+...|..+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 5899999999999 999999999999998444454 66889999999999999999999999887542 35888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~ 310 (425)
.|...|++++|..+|++..+..-..+...+..+...+...|+.
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNA 198 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcH
Confidence 9999999999999999987653113555665555555444443
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=8.2e-10 Score=97.89 Aligned_cols=230 Identities=10% Similarity=-0.005 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-h
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-R 189 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~ 189 (425)
+..+..+-..+...|++++|.+.|++..+.. ..+ ..|..+...|...|+++.+.+.++...+..+......|. .
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~---~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 79 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDI---TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCT---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccH---HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHH
Confidence 4567778888889999999999999988765 232 267788888999999666555555555543332111111 4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.+|..+...|.+.|++++|...|++.... .|+. ..+.+.|++++|.+.++...... +.+...|..+...|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHH
Confidence 68889999999999999999999999884 4553 34666788999999999888753 23567888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCcc
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLDE 349 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (425)
...|++++|...|++..+.. ..+..++..+...+...|+++.++. .+.+.++. ...+
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~---------------------~~~~al~~-~~~~ 206 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIA---------------------DCNKAIEK-DPNF 206 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH---------------------HHHHHHHH-CTTC
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHH---------------------HHHHHHHh-CHHH
Confidence 99999999999999987653 2356677777777776666654421 22222222 1234
Q ss_pred cceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 350 AMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 350 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+|..+...|...|++++| .+.|++..+
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A-----~~~~~~a~~ 235 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASA-----LETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHH-----HHHHHHHHH
Confidence 56677888889999999999 888888876
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.21 E-value=7.8e-10 Score=96.30 Aligned_cols=190 Identities=11% Similarity=-0.059 Sum_probs=147.6
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
+++..+..+-..+.+.|++++|...|++..+. .|.....+..+-..+.+.|+++++.+.++...+..+. +
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~ 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR------Y 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------c
Confidence 46667788888999999999999999998764 2333446788999999999955544444444443221 3
Q ss_pred hhHHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 189 RQALKSMISGLCEM-----------GQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 189 ~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
...|..+-.++.+. |++++|...|++..+. .| +...+..+-.++...|++++|...|+...+..
T Consensus 73 ~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-- 148 (217)
T 2pl2_A 73 LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-- 148 (217)
T ss_dssp HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--
Confidence 45899999999999 9999999999999885 45 46788999999999999999999999998877
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHhh
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQDL 314 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~~ 314 (425)
.+...|..+-..|...|++++|...|++..+. .| +...+..+...+...|+.+++.
T Consensus 149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~ 205 (217)
T 2pl2_A 149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAA 205 (217)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHH
Confidence 68899999999999999999999999998875 34 5567777777777777776653
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.21 E-value=6.6e-09 Score=91.92 Aligned_cols=207 Identities=10% Similarity=-0.022 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHH
Q 042756 54 SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETL 133 (425)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l 133 (425)
...|..+-..+...|+++.|...+.+.+ +.+ .+...+..+...+...|++++|.+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~---------------------~~~---~~~~~~~~~~~~~~~~~~~~~A~~~ 60 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAW---------------------ELH---KDITYLNNRAAAEYEKGEYETAIST 60 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHS---CCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------Hhh---ccHHHHHHHHHHHHHcccHHHHHHH
Confidence 3456667777777776666665555543 333 3556677777777777777777777
Q ss_pred HHHHHHhcCC---CchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC-------------------CCcc-Chh
Q 042756 134 ILETLSKLGS---RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS-------------------SVYV-KRQ 190 (425)
Q Consensus 134 ~~~m~~~~~~---~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~-------------------~~~p-~~~ 190 (425)
|++..+.... ..+....+|..+...|.+.|+++.+.+.++...+..+... ...| +..
T Consensus 61 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 140 (258)
T 3uq3_A 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAE 140 (258)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHH
Confidence 7776653111 1111134566777777777774443333333333210000 0001 123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.|..+...+...|++++|...|++..... +.+..+|..+..+|.+.|++++|.+.|+...+.. +.+...|..+...|.
T Consensus 141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 45555555555555555555555554432 1234455555555555555555555555554432 123445555555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 042756 271 DHNELSRMVLWLQKMK 286 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~ 286 (425)
..|++++|...|++..
T Consensus 219 ~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEYASALETLDAAR 234 (258)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 5555555555555543
No 38
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.2e-09 Score=99.71 Aligned_cols=220 Identities=10% Similarity=0.071 Sum_probs=159.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+..++..+...+...|+++.|...+.+++ +++......+ ......++..+...|...|++++|.+
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~--------------~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 90 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQAL--------------EDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAAN 90 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45677888888899998888888777743 3333333222 22356678889999999999999999
Q ss_pred HHHHHHHhc----CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC--CCCccChhHHHHHHHHHHhcCChh
Q 042756 133 LILETLSKL----GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPH 206 (425)
Q Consensus 133 l~~~m~~~~----~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~ 206 (425)
.|++..+.. +...+....++..+...|...|+++++.+.+....+..... .........|..+...|...|+++
T Consensus 91 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 170 (311)
T 3nf1_A 91 LLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYE 170 (311)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHH
Confidence 999987642 12234445678889999999999666555555554443111 111223458899999999999999
Q ss_pred HHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--------------------------
Q 042756 207 EAENLIEEMRVK------GLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESD-------------------------- 253 (425)
Q Consensus 207 ~a~~~~~~m~~~------g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-------------------------- 253 (425)
+|.++|++.... +-.|+ ..++..+...|.+.|++++|.++|+...+.
T Consensus 171 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (311)
T 3nf1_A 171 EVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250 (311)
T ss_dssp HHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHh
Confidence 999999999875 22443 457888999999999999999999988752
Q ss_pred ----------------------CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 254 ----------------------GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 254 ----------------------g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.-..+..+|..+...|.+.|++++|.++|++..+
T Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1122456777888888888888888888887654
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.21 E-value=8.6e-10 Score=96.96 Aligned_cols=201 Identities=11% Similarity=0.030 Sum_probs=138.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+..+|..+...+...|+++.|...+.+++ +.+ +.+...+..+...+.+.|++++|.+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l---------------------~~~--~~~~~~~~~la~~~~~~~~~~~A~~ 78 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI---------------------EEN--KEDAIPYINFANLLSSVNELERALA 78 (243)
T ss_dssp --------------------CCTTHHHHH---------------------TTC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHH---------------------HhC--cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555555666665555554444443 322 2357788888889999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
.|++..+... .....+..+...+...|+++.+.+.++...+..+ .+...|..+...+.+.|++++|...|
T Consensus 79 ~~~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 79 FYDKALELDS----SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp HHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHcCC----cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9999877522 1234677888889999995555554444444321 23458889999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
++..+.. +.+...+..+...+.+.|++++|.+.|+...+.. ..+..+|..+...|...|++++|.+.|++..+.
T Consensus 149 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 149 QRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 9988753 3357788899999999999999999999888753 235788999999999999999999999998764
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.19 E-value=5.5e-10 Score=101.96 Aligned_cols=255 Identities=9% Similarity=0.000 Sum_probs=168.8
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC--
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSK----LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS-- 182 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~-- 182 (425)
.+..++..+...+...|++++|.++|++..+. .+...+....++..+...|...|+++.+.+.++...+.....
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 35677888999999999999999999998762 111244445678889999999999666555555544443211
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK------GLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD-- 253 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-- 253 (425)
........+|..+...|...|++++|.+.|++..+. +-.| ...++..+...+...|++++|.++|+...+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 111223568999999999999999999999999875 3333 3557888999999999999999999988764
Q ss_pred ----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHHHHHHHHhhccCCchh
Q 042756 254 ----GTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDS-------GIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPL 321 (425)
Q Consensus 254 ----g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~-------g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~ 321 (425)
+-.| ...++..+...|...|++++|..+|+++.+. ...|...........+...+.....
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 256 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD-------- 256 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC--------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh--------
Confidence 2122 4568999999999999999999999998752 2233333322223332222221111
Q ss_pred hHHHHHhhcchhhHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 322 SILELTEVLNEEEVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
......+....+........+..+|..+...|.+.|++++| .++|++..+
T Consensus 257 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~al~ 306 (311)
T 3nf1_A 257 -------GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAA-----ETLEEAAMR 306 (311)
T ss_dssp --------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHH
T ss_pred -------HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHH
Confidence 01111111111111111123345788889999999999999 999988775
No 41
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.18 E-value=3.5e-10 Score=101.52 Aligned_cols=210 Identities=10% Similarity=-0.023 Sum_probs=150.9
Q ss_pred CCchhhhHHHHHHHhhhcCCCc--cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 87 HPRLSSLAFPLYMRITEESWFQ--WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 87 ~~~~~~~a~~lf~~m~~~~~~~--~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
..+.+++|++.|+.+.+..... .+..++..+...+...|++++|.+.|++..+.... ...+|..+...|...|+
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~----~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD----MPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHccC
Confidence 3457889999999887653221 25678888999999999999999999998875322 23468889999999999
Q ss_pred cccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 042756 165 KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~ 244 (425)
++++.+.++...+..+. +..+|..+...|.+.|++++|.+.|+++.+. .|+.......+..+...|++++|.
T Consensus 93 ~~~A~~~~~~al~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~ 164 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPT------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAK 164 (275)
T ss_dssp HHHHHHHHHHHHHHCTT------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHhcCcc------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHH
Confidence 65555555544443221 3459999999999999999999999999884 465555555666667889999999
Q ss_pred HHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHHHHHH
Q 042756 245 RIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIP--F-SVRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 245 ~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~--p-d~~t~~~ll~~~~~~~~~ 310 (425)
..++...... .++...|+ ++..+...++.++|...+.+..+..-. | +..++..+...|...|+.
T Consensus 165 ~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 165 EVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 9998777643 23444444 778888888999999999988654211 0 134445555555444444
No 42
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.17 E-value=4.3e-09 Score=100.46 Aligned_cols=241 Identities=14% Similarity=0.016 Sum_probs=173.9
Q ss_pred HHHHhhHHHHHHHHHHhHHhcCCCH----HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcC
Q 042756 30 CLTARLTKQGQRFLSSLALAVTRDS----KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEES 105 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~~~~d~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~ 105 (425)
....|++++|.+.|+......+.+. .+|..+-..+...|+++.|...+.+.+ +++.....
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--------------~~~~~~~~-- 121 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL--------------TLAKSMND-- 121 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------HHHHHTTC--
T ss_pred HHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHccC--
Confidence 3566799999999999988733343 578888899999999888888777743 33333221
Q ss_pred CCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCC-----------------cc
Q 042756 106 WFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDS-----------------KR 166 (425)
Q Consensus 106 ~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~-----------------~~ 166 (425)
......++..+-..|...|++++|.+.|++..+.. ....+....++..+-..|...|+ ++
T Consensus 122 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 122 -RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 22355678889999999999999999999876521 11233445577888888888888 66
Q ss_pred cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHcCCCHH
Q 042756 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGL-EPS----GFEYKCIIYGYGRLGLLE 241 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~ty~~ll~~~~~~g~~~ 241 (425)
.+.+.+....+.............+|..+...|...|++++|.+.|++..+..- .++ ..++..+...|...|+++
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 666555554444332211112235888899999999999999999999876411 011 237888899999999999
Q ss_pred HHHHHHHHHHHCC----CC-cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 242 DMERIVNQMESDG----TR-VDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 242 ~a~~~~~~m~~~g----~~-~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+|.+.++...+.. -. ....++..+...|...|++++|..+|++..+
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999776531 11 1257888899999999999999999998764
No 43
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.15 E-value=4.4e-09 Score=96.67 Aligned_cols=268 Identities=16% Similarity=0.050 Sum_probs=186.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCC----HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRD----SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d----~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
.....|++++|.+.|+...+..+.+ ...+..+...+...|+++.|...+.+.+ ++......
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~~~- 78 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL--------------TLARTIGD- 78 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHHTC-
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HHhhcccc-
Confidence 3456789999999999998873334 4778889999999999998888777743 23333211
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCC------------------
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDS------------------ 164 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~------------------ 164 (425)
......++..+...+...|++++|.+.+++..+.. ....+....++..+...|...|+
T Consensus 79 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 79 --QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR 156 (338)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH
T ss_pred --cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH
Confidence 22345678889999999999999999999876521 11222334467778888888888
Q ss_pred --cccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcC
Q 042756 165 --KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEP-SGFEYKCIIYGYGRL 237 (425)
Q Consensus 165 --~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~ 237 (425)
++.+.+.++...+.............++..+...+...|++++|.+.|++..+. +..+ ...++..+...+...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 665555555444433222111122358888999999999999999999998753 1111 133888889999999
Q ss_pred CCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHH
Q 042756 238 GLLEDMERIVNQMESD----GTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDS----GIPF-SVRTYNSVLNSCSTI 307 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~----g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~----g~~p-d~~t~~~ll~~~~~~ 307 (425)
|++++|.+.++...+. +-.+ ...++..+...|...|++++|...|++..+. +-.+ ...++..+-..+...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 9999999999987642 1111 1678888999999999999999999987642 1111 123555566666666
Q ss_pred HHHHHh
Q 042756 308 MSMLQD 313 (425)
Q Consensus 308 ~~~~~~ 313 (425)
|+++++
T Consensus 317 g~~~~A 322 (338)
T 3ro2_A 317 GNHDQA 322 (338)
T ss_dssp TCHHHH
T ss_pred CChHHH
Confidence 665554
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.13 E-value=7.4e-09 Score=98.22 Aligned_cols=270 Identities=15% Similarity=0.033 Sum_probs=190.5
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCC----HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhh
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRD----SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITE 103 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d----~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~ 103 (425)
......|++++|.+.|+......+.+ ..+|..+-..+...|+++.|...+.+.+ .+......
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~~~ 82 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL--------------TLARTIGD 82 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHhccc
Confidence 34466789999999999998873334 4678888899999999888888777743 33333211
Q ss_pred cCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCC-----------------
Q 042756 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDS----------------- 164 (425)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~----------------- 164 (425)
......++..+...|...|++++|.+.+++..+.. .........++..+-..|...|+
T Consensus 83 ---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a 159 (406)
T 3sf4_A 83 ---QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEV 159 (406)
T ss_dssp ---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHH
T ss_pred ---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhH
Confidence 11245678888999999999999999999876521 11222334467788888888888
Q ss_pred ---cccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHc
Q 042756 165 ---KRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPS----GFEYKCIIYGYGR 236 (425)
Q Consensus 165 ---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~----~~ty~~ll~~~~~ 236 (425)
++.+.+.+....+.............+|+.+...|...|++++|...|++..+.. -.++ ..++..+...|..
T Consensus 160 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 239 (406)
T 3sf4_A 160 RDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF 239 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 6666666555555433332222224588999999999999999999999987541 1122 3488889999999
Q ss_pred CCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHH
Q 042756 237 LGLLEDMERIVNQMESD----GTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFS----VRTYNSVLNSCST 306 (425)
Q Consensus 237 ~g~~~~a~~~~~~m~~~----g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~t~~~ll~~~~~ 306 (425)
.|++++|...++...+. +-.+ ...++..+...|...|++++|...|++..+..- .++ ..++..+-..|..
T Consensus 240 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 319 (406)
T 3sf4_A 240 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA 319 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999987642 2111 167888999999999999999999999764210 112 3456666666777
Q ss_pred HHHHHHhh
Q 042756 307 IMSMLQDL 314 (425)
Q Consensus 307 ~~~~~~~~ 314 (425)
.|+..++.
T Consensus 320 ~g~~~~A~ 327 (406)
T 3sf4_A 320 LGNHDQAM 327 (406)
T ss_dssp HTCHHHHH
T ss_pred cCCHHHHH
Confidence 77766653
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.13 E-value=8.9e-09 Score=86.61 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=138.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++.+|..+-..|.+.|++++|.+.|++..+. .|.....|..+...|.+.|+++.+.+.+.......+. +.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~------~~ 73 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT------SA 73 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------CH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch------hH
Confidence 6778999999999999999999999998875 2233447888999999999955544444444333221 23
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..+..+...+...++++.|...+.+..... +-+...+..+-.+|.+.|++++|.+.|+...+.. +.+..+|..+-..|
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHH
Confidence 478888889999999999999999988752 2357788999999999999999999999988764 23678999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
.+.|++++|.+.|++..+. .|+..
T Consensus 152 ~~~g~~~~A~~~~~~al~~--~p~~a 175 (184)
T 3vtx_A 152 EGKGLRDEAVKYFKKALEK--EEKKA 175 (184)
T ss_dssp HHTTCHHHHHHHHHHHHHT--THHHH
T ss_pred HHCCCHHHHHHHHHHHHhC--CccCH
Confidence 9999999999999998864 45543
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.13 E-value=3.6e-09 Score=94.78 Aligned_cols=241 Identities=10% Similarity=-0.072 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..+-.....+.+.|++++|.+.|++..+.... .. ..+..+...|.+.|++ +++...+.+..............
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~---~~~~~l~~~~~~~~~~---~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SP---YIYNRRAVCYYELAKY---DLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CS---TTHHHHHHHHHHTTCH---HHHHHHHHHHHTTSCTTTCCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cH---HHHHHHHHHHHHHhhH---HHHHHHHHHHHhccCchhHHHHH
Confidence 34445677888999999999999998875322 22 2567788899999995 45555555554422111122346
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
|..+...|...|++++|.+.|++..+.. +.+..++..+-..|.+.|++++|.+.|+...+.. +.+...|..+...+..
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH
Confidence 8999999999999999999999998853 2245789999999999999999999999887762 2356677777624445
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhCCCCc--
Q 042756 272 HNELSRMVLWLQKMKDSGIPFS-VRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDSSVLD-- 348 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 348 (425)
.+++++|.+.|++..+. .|+ ...+..+...+...++. ..+...+..+ ..+.++......+
T Consensus 155 ~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~------~~~~~A~~~~---------~~a~~~~~~~~~~~~ 217 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPD------TKQGLAKPYY---------EKLIEVCAPGGAKYK 217 (272)
T ss_dssp TTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTT------CSSCTTHHHH---------HHHHHHHGGGGGGGH
T ss_pred HHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcc------hhhHHHHHHH---------HHHHHHHhcccccch
Confidence 56999999999999875 344 44454444444443320 0011111111 1111122111111
Q ss_pred --ccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 349 --EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 349 --~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
-..+|..+-..|...|++++| .+.|++..+
T Consensus 218 ~~~~~~~~~l~~~~~~~~~~~~A-----~~~~~~al~ 249 (272)
T 3u4t_A 218 DELIEANEYIAYYYTINRDKVKA-----DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHh
Confidence 124677788888999999999 999999987
No 47
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.11 E-value=8e-08 Score=95.27 Aligned_cols=341 Identities=6% Similarity=-0.088 Sum_probs=214.9
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCC-------------chhhh----
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHP-------------RLSSL---- 93 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~-------------~~~~~---- 93 (425)
...|..++|..+|+.+....+-+...|..++..+.+.|+.+.|..+|.+++....... +..+.
T Consensus 23 ~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~ 102 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEK 102 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHH
Confidence 3467899999999999887777899999999999999999999999999987653110 11222
Q ss_pred HHHHHHHhhhcCCCc-cCHHHHHHHHHHHHh---------cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH---HH
Q 042756 94 AFPLYMRITEESWFQ-WNPKLVAEIIAFLDK---------QGQREEAETLILETLSKLGSRERELVLFYCNLIDS---FC 160 (425)
Q Consensus 94 a~~lf~~m~~~~~~~-~~~~~~~~ll~~~~~---------~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~---~~ 160 (425)
+.++|+.....-+.. .+...|...+....+ .|+++.|..+|++..+. |.......|...... +.
T Consensus 103 ~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 103 MAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhc
Confidence 233666654331222 355677766666554 68899999999998762 222212233322221 10
Q ss_pred ----------hcCCcccHHHHHHHHHH---HhhcC-CCCccC--------hhHHHHHHHHHHhc----CCh----hHHHH
Q 042756 161 ----------KHDSKRGFDDTYARLNQ---LVNSS-SSVYVK--------RQALKSMISGLCEM----GQP----HEAEN 210 (425)
Q Consensus 161 ----------~~g~~~~~~~~~~~~~~---~~~~~-~~~~p~--------~~~~~~li~~~~~~----g~~----~~a~~ 210 (425)
+.+++..+..++..+.. ..... ..+.|+ ...|...+..-... ++. +.|..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 11222222222222111 11111 012333 24666666443332 222 37778
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHc-------CCCHH-------HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHH
Q 042756 211 LIEEMRVKGLEPSGFEYKCIIYGYGR-------LGLLE-------DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELS 276 (425)
Q Consensus 211 ~~~~m~~~g~~p~~~ty~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~ 276 (425)
+|++.... .+-+...|......+.+ .|+++ +|..+|+...+.-.+-+...|..+...+.+.|+++
T Consensus 260 ~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 88888875 22356777777777765 78887 88999998876222335888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHHHHHHHhhc---------cCCchhhHH-HH---HhhcchhhHHHHHH-
Q 042756 277 RMVLWLQKMKDSGIPFSV--RTYNSVLNSCSTIMSMLQDLN---------SNDFPLSIL-EL---TEVLNEEEVSVVKE- 340 (425)
Q Consensus 277 ~A~~l~~~M~~~g~~pd~--~t~~~ll~~~~~~~~~~~~~~---------~~~~~~~~~-~~---~~~~~~~~~~~~~~- 340 (425)
+|..+|++..+. .|+. ..|......+.+.|+++.+.. +..+...+. .+ ...+..+.+..+.+
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~ 416 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 416 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 999999998874 5643 467777777777777766632 112222222 11 23444455544433
Q ss_pred HHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 341 LEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 341 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.++. ...+...|..++..+.+.|+.++| ..+|++...
T Consensus 417 al~~-~p~~~~~~~~~~~~~~~~g~~~~A-----r~~~~~al~ 453 (530)
T 2ooe_A 417 GLKK-YGDIPEYVLAYIDYLSHLNEDNNT-----RVLFERVLT 453 (530)
T ss_dssp HHHH-HTTCHHHHHHHHHHHTTTTCHHHH-----HHHHHHHHH
T ss_pred HHHH-CCCCHHHHHHHHHHHHhCCCHhhH-----HHHHHHHHh
Confidence 3332 223467889999999999999999 999999987
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.08 E-value=9.8e-09 Score=90.09 Aligned_cols=192 Identities=9% Similarity=-0.069 Sum_probs=143.3
Q ss_pred HHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc
Q 042756 29 QCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ 108 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~ 108 (425)
.....|++++|.+.|+......+.+..++..+...+...|+++.|...+.+.+. .+ +
T Consensus 32 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---------------------~~--~ 88 (243)
T 2q7f_A 32 RGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE---------------------LD--S 88 (243)
T ss_dssp ----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HC--T
T ss_pred HHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------cC--C
Confidence 345678999999999998876566789999999999999877777766666532 22 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.+..++..+...+...|++++|.+.|++..+.... . ...+..+...+.+.|+++.+.+.++...+..+ .+
T Consensus 89 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~ 158 (243)
T 2q7f_A 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-N---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE------ND 158 (243)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-S---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT------TC
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-C---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------cc
Confidence 36778888999999999999999999998875322 2 23677888999999995554444444443321 23
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
...|..+...+.+.|++++|.+.|++..... +.+..++..+..+|.+.|++++|.+.++...+..
T Consensus 159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 4589999999999999999999999998763 3357799999999999999999999999998753
No 49
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=5.7e-08 Score=89.20 Aligned_cols=226 Identities=10% Similarity=-0.037 Sum_probs=164.3
Q ss_pred HHHHHHHHHhHHhcCCCHHHHHHHHHHHHhc-------CChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc-CCCc
Q 042756 37 KQGQRFLSSLALAVTRDSKAASRLISKFVAS-------SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE-SWFQ 108 (425)
Q Consensus 37 ~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~-------~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~-~~~~ 108 (425)
++|..+|++.....+.+...|..+...+... |+.... .+..++|..+|++.... + +
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~--------------~~~~~~A~~~~~rAl~~~~--p 96 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNA--------------KLFSDEAANIYERAISTLL--K 96 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHH--------------HHHHHHHHHHHHHHHTTTT--T
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhc--------------ccchHHHHHHHHHHHHHhC--c
Confidence 6788889888877677888898888887643 432100 01235666666665542 2 1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
-+...|..+...+.+.|++++|.++|++..+.. |... ...|..+...+.+.|+. +++...+.+.....+ ++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~-~~~~~~~~~~~~~~~~~---~~A~~~~~~a~~~~p---~~ 167 (308)
T 2ond_A 97 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDP-TLVYIQYMKFARRAEGI---KSGRMIFKKAREDAR---TR 167 (308)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCT-HHHHHHHHHHHHHHHCH---HHHHHHHHHHHTSTT---CC
T ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCc-cHHHHHHHHHHHHhcCH---HHHHHHHHHHHhcCC---CC
Confidence 256688889999999999999999999998741 1111 12678888889999984 555555555544321 22
Q ss_pred hhHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCc--CHHhHHH
Q 042756 189 RQALKSMISGLC-EMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRV--DTVCSNM 264 (425)
Q Consensus 189 ~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~yn~ 264 (425)
...|........ ..|++++|..+|++..+.. +-+...|..++..+.+.|++++|..+|+...+.. +.| ....|..
T Consensus 168 ~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~ 246 (308)
T 2ond_A 168 HHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 246 (308)
T ss_dssp THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 335544333322 3699999999999998752 2257789999999999999999999999999863 455 4678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 265 VLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 265 li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
++..+.+.|+.++|..+++++.+.
T Consensus 247 ~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 247 FLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999998764
No 50
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.07 E-value=5.2e-08 Score=87.10 Aligned_cols=234 Identities=7% Similarity=-0.032 Sum_probs=175.1
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
......|.+++|.+.|+...+..+.+...+..+...+...|+++.|...+.+.+... +..
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------~~~ 70 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--------------------NAT 70 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------------------CTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------------------Cch
Confidence 344567899999999999987644566688889999999998888888888776521 112
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
......|..+...+.+.|++++|.+.|++..+.... . ..+|..+...|...|+ .+++...+.+.....+ -
T Consensus 71 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~---~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~~---~ 140 (272)
T 3u4t_A 71 KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-R---LDMYGQIGSYFYNKGN---FPLAIQYMEKQIRPTT---T 140 (272)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-C---THHHHHHHHHHHHTTC---HHHHHHHHGGGCCSSC---C
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-c---HHHHHHHHHHHHHccC---HHHHHHHHHHHhhcCC---C
Confidence 234566888999999999999999999998875322 2 2368899999999999 6667777766654321 2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCC-CCcC----
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGL---LEDMERIVNQMESDG-TRVD---- 258 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~---~~~a~~~~~~m~~~g-~~~~---- 258 (425)
+...|..+...+...+++++|.+.|++..+. .|+ ...+..+..++...|+ .++|...++...+.. -.|+
T Consensus 141 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 3457777772444456999999999999885 343 6777788888888888 888888888776531 1233
Q ss_pred --HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 259 --TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 259 --~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
..+|..+-..|...|++++|.+.|++..+. .|+..
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 255 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHH
Confidence 368888999999999999999999998865 45543
No 51
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.06 E-value=1.4e-08 Score=90.89 Aligned_cols=196 Identities=11% Similarity=0.055 Sum_probs=143.4
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHhcCCcc
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL----GSRERELVLFYCNLIDSFCKHDSKR 166 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~~~~y~~li~~~~~~g~~~ 166 (425)
+++|++++......+ .+....++..+-..|...|++++|.+.|++..+.. +...+....++..+...|...|+++
T Consensus 24 ~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 102 (283)
T 3edt_B 24 CKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK 102 (283)
T ss_dssp HHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence 344556666654433 23456788899999999999999999999987642 1224455667889999999999976
Q ss_pred cHHHHHHHHHHHhhcC--CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHcC
Q 042756 167 GFDDTYARLNQLVNSS--SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK------GLEP-SGFEYKCIIYGYGRL 237 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~--~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~ty~~ll~~~~~~ 237 (425)
.+.+.+....+..... ........+|..+...|...|++++|.++|++.... +-.| ...++..+...|.+.
T Consensus 103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (283)
T 3edt_B 103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ 182 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence 6655555554443211 101123468999999999999999999999999875 2234 356888999999999
Q ss_pred CCHHHHHHHHHHHHHC------------------------------------------------CCCcCHHhHHHHHHHH
Q 042756 238 GLLEDMERIVNQMESD------------------------------------------------GTRVDTVCSNMVLSSY 269 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~------------------------------------------------g~~~~~~~yn~li~~~ 269 (425)
|++++|.++++...+. .......+|..+...|
T Consensus 183 g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 262 (283)
T 3edt_B 183 GKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALY 262 (283)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 9999999999988753 1122345777888888
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 042756 270 GDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~ 287 (425)
...|++++|..+|++..+
T Consensus 263 ~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 263 RRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888887664
No 52
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.06 E-value=3.3e-08 Score=96.13 Aligned_cols=341 Identities=9% Similarity=-0.029 Sum_probs=190.9
Q ss_pred HHhhHHHHHHHHHHhHHh--------cCC-CHHHHHHHHHHHHhcCChHHHHHHHHhhhCC-----CCCC----------
Q 042756 32 TARLTKQGQRFLSSLALA--------VTR-DSKAASRLISKFVASSPQFIALNALSHLLSP-----DTTH---------- 87 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~--------~~~-d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~-----~~~~---------- 87 (425)
..|..++|++.|+...+. ..| ...+|+.+-..|...|+++.|...+.+.+.- +...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 467888898888765442 123 4688999999999999999999988876421 1000
Q ss_pred --------CchhhhHHHHHHHhhhcCCCccCHHHHHHHHHH---HHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 042756 88 --------PRLSSLAFPLYMRITEESWFQWNPKLVAEIIAF---LDKQGQREEAETLILETLSKLGSRERELVLFYCNLI 156 (425)
Q Consensus 88 --------~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li 156 (425)
.+.+++|++.|++..+.+. -++..+..+... +...++.++|++.|++..+... .....+..+.
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p--~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p----~~~~~~~~l~ 216 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKP--KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP----DNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS----SCHHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC----cchHHHHHHH
Confidence 1247889999999776552 244444444333 4566888889998888766422 1123455555
Q ss_pred HHHHhcCCcc-cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 042756 157 DSFCKHDSKR-GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGY 234 (425)
Q Consensus 157 ~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~ 234 (425)
..+...+... ..+++...+.+.....+ .+..+++.+...|.+.|++++|...|++..+. .|+ ..++..+-.+|
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y 291 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAP---GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCY 291 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCc---cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHH
Confidence 5555543321 13344444444433221 23458999999999999999999999999875 453 55666665554
Q ss_pred HcC-------------------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 235 GRL-------------------GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 235 ~~~-------------------g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
... +..+.|...|+...+.. +.+..+|..+-..|...|++++|+..|++..+... +..
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~--~~~ 368 (472)
T 4g1t_A 292 RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL--TPV 368 (472)
T ss_dssp HHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC--CHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC--CCh
Confidence 322 23566777777766543 23567888999999999999999999999887643 332
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcc--------hhhHHHHHHHHh---CCCCcccceeeccccchhccc
Q 042756 296 TYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLN--------EEEVSVVKELED---SSVLDEAMKWDSGETKLDLHG 364 (425)
Q Consensus 296 t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~ 364 (425)
.-..+...+....... ...+...+..|.+... ......+..+.+ .....+..+|+.+-..|...|
T Consensus 369 ~~~~~~~~~~~~~~~~----~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 369 AKQLLHLRYGNFQLYQ----MKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp HHHHHHHHHHHHHHHT----SSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 2222211121111100 0011122222222211 001111112211 112345678999999999999
Q ss_pred CcchhHHHHHHHHHHHHHhhccCCCCCCCCeeeee
Q 042756 365 MHLGSAYFIILQWMDEMRNRFNNEKHVIPAEITVV 399 (425)
Q Consensus 365 ~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~t~~ 399 (425)
++++| ++.|++..+ .....|+..+|.
T Consensus 445 ~~~~A-----~~~y~kALe----~~~~~p~a~~~~ 470 (472)
T 4g1t_A 445 KMQQA-----DEDSERGLE----SGSLIPSASSWN 470 (472)
T ss_dssp HCC--------------------------------
T ss_pred CHHHH-----HHHHHHHHh----cCCCCCcHhhcC
Confidence 99999 999999987 245567776664
No 53
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=3.5e-08 Score=93.43 Aligned_cols=324 Identities=9% Similarity=-0.044 Sum_probs=195.0
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh---cCCCH--HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHh
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA---VTRDS--KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI 101 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~---~~~d~--~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m 101 (425)
-|..+.++++++|.++++.+.+. ...|. ..|-.++..-. ....+-+..........+ ....++++.+
T Consensus 19 w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~-----~~~~~~~~~~~~~~~e~~---~~~~~~~~~i 90 (383)
T 3ulq_A 19 WYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRH-----NLMLEYLEPLEKMRIEEQ---PRLSDLLLEI 90 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-----HHHHHHHGGGGGSCGGGS---CCHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-----HHHHhhcCcccccccccc---cchhhHHHHH
Confidence 48889999999999999999887 33443 33333332111 111111111100000000 0111444544
Q ss_pred hhcCCCccC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHH
Q 042756 102 TEESWFQWN----PKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARL 175 (425)
Q Consensus 102 ~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~ 175 (425)
.... ...+ ...+-..-..+...|++++|.+.|++..+. .....+....+|..+-..|...|+++.+.+.+...
T Consensus 91 ~~~~-~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 91 DKKQ-ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHT-HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcC-CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3321 1001 111222445567889999999999998763 12223334567888999999999977666666655
Q ss_pred HHHhhcCCCCcc-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 176 NQLVNSSSSVYV-KRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 176 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.+.........| ...+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+-..|...|++++|.+.|+.
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555444322112 2458999999999999999999999998754 2111 124888899999999999999999998
Q ss_pred HHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHHHHHHhhccCCchhhH
Q 042756 250 MESD----GT-RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSI 323 (425)
Q Consensus 250 m~~~----g~-~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~ 323 (425)
..+. +. .....++..+-..|.+.|++++|...|++..+..- .+|...... +...+.+-..
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~----~~~l~~~~~~---------- 315 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE----FEFLKSLYLS---------- 315 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH----HHHHHHHHTS----------
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHHhC----------
Confidence 8762 33 33577899999999999999999999999764211 112211111 1112222111
Q ss_pred HHHHhhcchhhHHHHHHHHhC-CCCcc-cceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 324 LELTEVLNEEEVSVVKELEDS-SVLDE-AMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+..+....+...++. +..|+ ...+..+-..|...|++++| .+.|++..+
T Consensus 316 -----~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A-----~~~~~~al~ 367 (383)
T 3ulq_A 316 -----GPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKA-----SAYFLKVEQ 367 (383)
T ss_dssp -----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred -----CCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHH
Confidence 1111112222222222 22222 23566777889999999999 999988765
No 54
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.04 E-value=2.3e-07 Score=83.28 Aligned_cols=222 Identities=8% Similarity=-0.075 Sum_probs=149.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhhcCCCC
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSV 185 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~ 185 (425)
++..+..+-..+.+.|++++|.+.|++..+. ..+ ..+..+-..|.. .++ .+++...+.+....+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~---~a~~~lg~~~~~g~~~~~~---~~~A~~~~~~a~~~~--- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KEN---SGCFNLGVLYYQGQGVEKN---LKKAASFYAKACDLN--- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCH---HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCH---HHHHHHHHHHHcCCCcCCC---HHHHHHHHHHHHHCC---
Confidence 4556666777788888888888888887762 122 245667777777 777 455555555554443
Q ss_pred ccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCc
Q 042756 186 YVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----LGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 186 ~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~a~~~~~~m~~~g~~~ 257 (425)
+...+..+-..|.. .+++++|+..|++..+.+ +...+..+-..|.. .+++++|.+.|+...+.+
T Consensus 73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--- 144 (273)
T 1ouv_A 73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--- 144 (273)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---
T ss_pred --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---
Confidence 33478888888888 888888888888888765 66778888888888 888888888888888765
Q ss_pred CHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----HHHHHHhhccCCchhhHHHHHhh
Q 042756 258 DTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST----IMSMLQDLNSNDFPLSILELTEV 329 (425)
Q Consensus 258 ~~~~yn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 329 (425)
+...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .++..++
T Consensus 145 ~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A---------------- 205 (273)
T 1ouv_A 145 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEA---------------- 205 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHH----------------
T ss_pred cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHH----------------
Confidence 56677777777777 888888888888887764 33444444444433 2222222
Q ss_pred cchhhHHHHHHHHhCCCCcccceeeccccchhc----ccCcchhHHHHHHHHHHHHHh
Q 042756 330 LNEEEVSVVKELEDSSVLDEAMKWDSGETKLDL----HGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~m~~ 383 (425)
...+.+.++.+. ...+..+-..|.. .++.++| .++|++..+
T Consensus 206 -----~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A-----~~~~~~a~~ 250 (273)
T 1ouv_A 206 -----LARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQA-----IENFKKGCK 250 (273)
T ss_dssp -----HHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTH-----HHHHHHHHH
T ss_pred -----HHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHH-----HHHHHHHHH
Confidence 111222223321 3344444555555 8899999 999988877
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.03 E-value=3.6e-09 Score=97.25 Aligned_cols=250 Identities=11% Similarity=-0.048 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
...+..+...+...|++++|.+.+++..+. .....+....++..+...|...|+++.+.+.+....+..+........
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 122 (338)
T 3ro2_A 43 SAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHH
Confidence 467888999999999999999999986542 111233335577888899999999776666666655554443222222
Q ss_pred hhHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHH
Q 042756 189 RQALKSMISGLCEMGQ--------------------PHEAENLIEEMRVK----GLEP-SGFEYKCIIYGYGRLGLLEDM 243 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~a 243 (425)
..++..+...|...|+ +++|.+.|++.... +-.| ...++..+...+...|++++|
T Consensus 123 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 202 (338)
T 3ro2_A 123 ARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDA 202 (338)
T ss_dssp HHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4588899999999999 99999999887543 2222 244788888999999999999
Q ss_pred HHHHHHHHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHHHHHHHh
Q 042756 244 ERIVNQMESD----GT-RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFS----VRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 244 ~~~~~~m~~~----g~-~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~t~~~ll~~~~~~~~~~~~ 313 (425)
.+.++...+. +- .....++..+...|...|++++|...|++..+..- .++ ..++..+-..+...|+.+++
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999987643 11 11244889999999999999999999998764210 112 33455555555555555444
Q ss_pred hccCCchhhHHHHHhhcchhhHHHHHHHHh-CCCC-cccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 314 LNSNDFPLSILELTEVLNEEEVSVVKELED-SSVL-DEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.. .+ ..+.++.. .+.. ....+|..+...|...|++++| .++|++..+
T Consensus 283 ~~---------~~---------~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~a~~ 331 (338)
T 3ro2_A 283 ID---------YH---------LKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA-----MHFAEKHLE 331 (338)
T ss_dssp HH---------HH---------HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHH
T ss_pred HH---------HH---------HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH-----HHHHHHHHH
Confidence 22 00 01111111 1111 1234677788899999999999 999999876
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.03 E-value=5.7e-09 Score=99.00 Aligned_cols=288 Identities=10% Similarity=-0.060 Sum_probs=188.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccC--HHHHHHHHHHHHhcCChhH
Q 042756 52 RDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWN--PKLVAEIIAFLDKQGQREE 129 (425)
Q Consensus 52 ~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~--~~~~~~ll~~~~~~g~~~~ 129 (425)
.....+...-..+...|+++.|...+.+.+ ..+.-.+. ..++..+...+...|++++
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 65 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAV---------------------QVGTEDLKTLSAIYSQLGNAYFYLHDYAK 65 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHCCSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------hcCcccHHHHHHHHHHHHHHHHHhcCHHH
Confidence 445555666666777776666666665553 22211111 3578888899999999999
Q ss_pred HHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCC---
Q 042756 130 AETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ--- 204 (425)
Q Consensus 130 A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~--- 204 (425)
|.+.|++..+. .....+....++..+...|...|+++.+.+.+....+..+..........++..+-..|...|+
T Consensus 66 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 145 (406)
T 3sf4_A 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFG 145 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccc
Confidence 99999987542 1222344455778888899999997666665555555443322111224588999999999999
Q ss_pred -----------------hhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC-c
Q 042756 205 -----------------PHEAENLIEEMRVK----GLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTR-V 257 (425)
Q Consensus 205 -----------------~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~-~ 257 (425)
+++|.+.|++.... +-.|. ..++..+-..|...|++++|.+.++...+. +-. .
T Consensus 146 ~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 225 (406)
T 3sf4_A 146 CPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA 225 (406)
T ss_dssp -------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH
Confidence 99999999887643 22222 347888899999999999999999987643 111 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHHHHHHHhhccCCchhhHHHHHhhcch
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGI-PFS----VRTYNSVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNE 332 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~-~pd----~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (425)
...+|..+...|...|++++|...|++..+..- .++ ..++..+-..|...|+++++.. .+
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~---------~~------ 290 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID---------YH------ 290 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH---------HH------
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH---------HH------
Confidence 235889999999999999999999998764210 112 3455556666666666555432 00
Q ss_pred hhHHHHHHHHh-CCCCc-ccceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 333 EEVSVVKELED-SSVLD-EAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 333 ~~~~~~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
..+.++.. .+..+ ...+|..+-..|...|++++| .++|++..+
T Consensus 291 ---~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-----~~~~~~al~ 335 (406)
T 3sf4_A 291 ---LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA-----MHFAEKHLE 335 (406)
T ss_dssp ---HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH-----HHHHHHHHH
T ss_pred ---HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH-----HHHHHHHHH
Confidence 11111111 11111 134667777888888999998 777777654
No 57
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.01 E-value=1.6e-07 Score=88.82 Aligned_cols=234 Identities=8% Similarity=-0.023 Sum_probs=175.7
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCC-hHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCH
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSP-QFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNP 111 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~-~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~ 111 (425)
.|++++|++.|+.....-+-+..+|+.+-..+...|+ ++.|+..+.++ ...+ +-+.
T Consensus 110 ~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~a---------------------l~l~--P~~~ 166 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAI---------------------IEEQ--PKNY 166 (382)
T ss_dssp TCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH---------------------HHHC--TTCH
T ss_pred CCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHH---------------------HHHC--CCCH
Confidence 4578899999999887655578889999999988885 55555555554 3333 1277
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..|..+-..+.+.|++++|+..|++..+. .+.....|..+-.++.+.|+++++.+.++...+.-+. +...
T Consensus 167 ~a~~~~g~~~~~~g~~~eAl~~~~kal~l----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~------~~~a 236 (382)
T 2h6f_A 167 QVWHHRRVLVEWLRDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR------NNSV 236 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHH
Confidence 78999999999999999999999999875 3333457888999999999987766666666554322 3459
Q ss_pred HHHHHHHHHh-cCChhHH-----HHHHHHHHHcCCCC-CHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHCCCCcCHHhH
Q 042756 192 LKSMISGLCE-MGQPHEA-----ENLIEEMRVKGLEP-SGFEYKCIIYGYGRLG--LLEDMERIVNQMESDGTRVDTVCS 262 (425)
Q Consensus 192 ~~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~y 262 (425)
|+.+-.++.+ .|..++| ++.|++.... .| +...|..+-..+.+.| ++++|.+.+..+ +. -..+...+
T Consensus 237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al 312 (382)
T 2h6f_A 237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHH
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHH
Confidence 9999999999 6666888 4888888774 45 4678888888899988 689999999887 32 23467888
Q ss_pred HHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCH-HHHHHHHHHHH
Q 042756 263 NMVLSSYGDHN---------ELSRMVLWLQKM-KDSGIPFSV-RTYNSVLNSCS 305 (425)
Q Consensus 263 n~li~~~~~~g---------~~~~A~~l~~~M-~~~g~~pd~-~t~~~ll~~~~ 305 (425)
..+...|.+.| ..++|+++|++. .+. .|+. ..|..+...+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 99999998874 358999999998 543 5544 45665555543
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.01 E-value=1e-06 Score=85.52 Aligned_cols=233 Identities=9% Similarity=-0.041 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHH
Q 042756 51 TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEA 130 (425)
Q Consensus 51 ~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 130 (425)
......||.|-..+...|++++|+..+.+ |++++........-.-...+|+.+-..|...|++++|
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~k--------------Al~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A 113 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRK--------------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDV 113 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHH--------------HHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHH--------------HHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHH
Confidence 34467899999999999999999887776 4555555433222223567899999999999999999
Q ss_pred HHHHHHHHHh----cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hhHHHHHHHH---HHhc
Q 042756 131 ETLILETLSK----LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQALKSMISG---LCEM 202 (425)
Q Consensus 131 ~~l~~~m~~~----~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~---~~~~ 202 (425)
...|++..+. ..........+|..+-.++.+.|..+ .++|...+.+..... |+ ...+..+..+ +...
T Consensus 114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-y~~A~~~~~kal~~~----p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ-NERAKVCFEKALEKK----PKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHcccc-HHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCc
Confidence 9999887642 11111122235655555565544311 444555555544322 22 2244444433 4556
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL----GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
++.++|++.|++..+.. +.+..++..+...+.+. |++++|.++++...... +.+...++.+...|...|++++|
T Consensus 189 ~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A 266 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKA 266 (472)
T ss_dssp CCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHH
Confidence 88899999999887742 22456666665555544 57889999999887654 23678899999999999999999
Q ss_pred HHHHHHHHhCCCCCC-HHHHHHHHHHHHH
Q 042756 279 VLWLQKMKDSGIPFS-VRTYNSVLNSCST 306 (425)
Q Consensus 279 ~~l~~~M~~~g~~pd-~~t~~~ll~~~~~ 306 (425)
...|++..+. .|+ ..++..+-.+|..
T Consensus 267 ~~~~~~al~~--~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 267 IELLKKALEY--IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCChHHHHHHHHHHHHH
Confidence 9999998865 454 4566666555544
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.99 E-value=2.4e-08 Score=95.21 Aligned_cols=241 Identities=9% Similarity=-0.035 Sum_probs=174.2
Q ss_pred HHHhhHHHHHHHHHHhHHh---c---CCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 31 LTARLTKQGQRFLSSLALA---V---TRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~---~---~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
...|++++|.+.|+..... . .....++..+-..|...|+++.|...+.+. ++++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------------l~~~~~~~~- 161 (411)
T 4a1s_A 97 FYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH--------------LTLARQLGD- 161 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHHTC-
T ss_pred HHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------HHHHHHhhc-
Confidence 4467888899988887765 1 224567888888888899988888877774 334333321
Q ss_pred CCCccCHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCc
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQ-----------------REEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSK 165 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~ 165 (425)
......++..+-..|...|+ +++|.+.+++..+. .....+....++..+-..|...|++
T Consensus 162 --~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 239 (411)
T 4a1s_A 162 --RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDF 239 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred --hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence 12345678888999999999 99999998886542 1112233445778888999999997
Q ss_pred ccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC--C--C-CCHHHHHHHHHHHHcCCCH
Q 042756 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG--L--E-PSGFEYKCIIYGYGRLGLL 240 (425)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~--~-p~~~ty~~ll~~~~~~g~~ 240 (425)
+.+.+.++...+.............+|..+...|...|++++|.+.|++..... . . ....++..+...|.+.|++
T Consensus 240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 319 (411)
T 4a1s_A 240 QAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEF 319 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 766666665555543322111123488999999999999999999999887641 1 1 1256888899999999999
Q ss_pred HHHHHHHHHHHHC----CC-CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 241 EDMERIVNQMESD----GT-RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 241 ~~a~~~~~~m~~~----g~-~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
++|.+.++...+. +- .....+|..+...|...|++++|...|++..+.
T Consensus 320 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999987653 11 112458888999999999999999999998754
No 60
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.99 E-value=7.3e-07 Score=79.90 Aligned_cols=212 Identities=6% Similarity=-0.087 Sum_probs=159.6
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHh----cCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCC
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVA----SSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESW 106 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~----~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~ 106 (425)
...++.++|.+.|+...+ .-+..++..+-..|.. .++. ++|.+.|++..+.+
T Consensus 17 ~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~---------------------~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 17 YKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNL---------------------KKAASFYAKACDLN- 72 (273)
T ss_dssp HHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCH---------------------HHHHHHHHHHHHTT-
T ss_pred HhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCH---------------------HHHHHHHHHHHHCC-
Confidence 345688888888888776 3455667767666666 5544 44555555544443
Q ss_pred CccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHH
Q 042756 107 FQWNPKLVAEIIAFLDK----QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQL 178 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~~~~~~~~~~~~ 178 (425)
++..+..+-..|.. .+++++|.+.|++..+.+ . ...+..+-..|.. .++ .+++...+.+.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~---~~a~~~lg~~~~~~~~~~~~---~~~A~~~~~~a 140 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---Y---AEGCASLGGIYHDGKVVTRD---FKKAVEYFTKA 140 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C---HHHHHHHHHHHHHCSSSCCC---HHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---C---ccHHHHHHHHHHcCCCcccC---HHHHHHHHHHH
Confidence 66777788888888 999999999999987752 2 2256777778887 777 55666666666
Q ss_pred hhcCCCCccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHH
Q 042756 179 VNSSSSVYVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----LGLLEDMERIVNQM 250 (425)
Q Consensus 179 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~a~~~~~~m 250 (425)
...+ +...+..+-..|.. .+++++|...|++..+.+ +...+..+-..|.+ .+++++|.+.|+..
T Consensus 141 ~~~~-----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 141 CDLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HhcC-----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 5443 23478888888888 899999999999998875 56778888888888 99999999999998
Q ss_pred HHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 042756 251 ESDGTRVDTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 251 ~~~g~~~~~~~yn~li~~~~~----~g~~~~A~~l~~~M~~~g 289 (425)
.+.+ +...+..+-..|.. .++.++|.+.|++..+.|
T Consensus 213 ~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 213 CELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8875 36778888888888 899999999999988765
No 61
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.98 E-value=4.6e-08 Score=81.56 Aligned_cols=166 Identities=9% Similarity=-0.071 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
...|..+...+...|++++|.+.|++..+... .....+..+...+...|+++.+.+.++...+. . ..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~---~~~~~ 77 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA----FDVDVALHLGIAYVKTGAVDRGTELLERSLAD---A---PDNVK 77 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C---TTCHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---C---CCCHH
Confidence 45667788888999999999999998765321 12346788889999999955544444444333 2 12345
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.|..+...+...|++++|.+.|++..... +.+...+..+...+.+.|++++|.++++...+.. ..+...|..+...|.
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 155 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYE 155 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHH
Confidence 88999999999999999999999998763 3467888999999999999999999999988764 336789999999999
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 042756 271 DHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~ 288 (425)
..|++++|...|++..+.
T Consensus 156 ~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 156 QMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHc
Confidence 999999999999998653
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.97 E-value=6.4e-08 Score=94.63 Aligned_cols=211 Identities=9% Similarity=-0.003 Sum_probs=168.1
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQR-EEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
.+++++..+++..... ..+...+..+-..+...|++ ++|.+.|++..+.. |.....|..+-..|.+.|++
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~--- 153 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGDV--- 153 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCH---
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCH---
Confidence 4567777787765543 24788888899999999999 99999999988752 22234788999999999994
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM---------GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL-- 237 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-- 237 (425)
+++...+.+.... .|+...|..+-..|... |++++|.+.|++..+.. +-+...|..+-.+|...
T Consensus 154 ~~A~~~~~~al~~----~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 228 (474)
T 4abn_A 154 TSAHTCFSGALTH----CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYF 228 (474)
T ss_dssp HHHHHHHHHHHTT----CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh----CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 5555555555543 35667999999999999 99999999999998853 22577899999999998
Q ss_pred ------CCHHHHHHHHHHHHHCCCC--cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 238 ------GLLEDMERIVNQMESDGTR--VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 238 ------g~~~~a~~~~~~m~~~g~~--~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
|++++|.+.|+...+..-. -+...|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...|+
T Consensus 229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~ 307 (474)
T 4abn_A 229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSR 307 (474)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999998875310 378999999999999999999999999987652 2245578888888888888
Q ss_pred HHHhhc
Q 042756 310 MLQDLN 315 (425)
Q Consensus 310 ~~~~~~ 315 (425)
.+.++.
T Consensus 308 ~~eAi~ 313 (474)
T 4abn_A 308 LTSLLE 313 (474)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877743
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.97 E-value=2.1e-07 Score=87.98 Aligned_cols=238 Identities=9% Similarity=-0.007 Sum_probs=171.1
Q ss_pred HHHhhHHHHHHHHHHhHHh--cCCC----HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 31 LTARLTKQGQRFLSSLALA--VTRD----SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~--~~~d----~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
...|++++|.+.|+..... -.+| ..+|..+-..+...|+++.|...+.+. ++++......
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a--------------l~~~~~~~~~ 179 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA--------------YEIYKEHEAY 179 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHTCSTT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHHHHhCccc
Confidence 4457889999999998776 2343 467888888999999999888877664 4454443210
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (425)
......+++.+-..|...|++++|.+.|++..+. .....+....++..+-..|...|+++.+.+.++...+.....
T Consensus 180 --~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 180 --NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred --hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 1123567888999999999999999999987652 112233334578889999999999766666555555543332
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCC
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG----LEPSGFEYKCIIYGYGRLGL---LEDMERIVNQMESDGT 255 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~ty~~ll~~~~~~g~---~~~a~~~~~~m~~~g~ 255 (425)
....-...++..+-..|.+.|++++|...|++..... -......+..+-..|...|+ +++|..+++.. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 2111224689999999999999999999999987641 12223346778888999999 77777777665 33
Q ss_pred Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 256 RV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 256 ~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.| ....+..+-..|...|++++|...|++..+
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 355778889999999999999999998754
No 64
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=1.7e-07 Score=88.57 Aligned_cols=324 Identities=8% Similarity=-0.026 Sum_probs=192.4
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh---cCCCHH--HHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHh
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA---VTRDSK--AASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI 101 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~---~~~d~~--~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m 101 (425)
-|..+.++++++|.++++++... ...|.. .|-.++.. -..++..-+.... ..+......+.++.+
T Consensus 19 wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~---------r~~~~~~~~~~~~-~~~~~~~~~~~l~~i 88 (378)
T 3q15_A 19 WYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCF---------RHQLMLDYLEPGK-TYGNRPTVTELLETI 88 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHH---------HHHHHHHTCCC---------CHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---------HHHHHHhhcCccc-ccccccchHHHHHHH
Confidence 38889999999999999998776 434433 22333321 1112222211110 000112222444444
Q ss_pred hhcCC-CccCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q 042756 102 TEESW-FQWNP--KLVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLN 176 (425)
Q Consensus 102 ~~~~~-~~~~~--~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~ 176 (425)
..... ..+.. ..|-..-..+...|++++|.+.|++..+.. ....+....++..+-..|...|+++.+.+.+....
T Consensus 89 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al 168 (378)
T 3q15_A 89 ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL 168 (378)
T ss_dssp HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 32210 00011 112223344568899999999999987632 22234445578889999999999766665555555
Q ss_pred HHhhcCCCCcc-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 177 QLVNSSSSVYV-KRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 177 ~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
+.........+ ...+++.+-..|...|++++|.+.|++..+. +-.+ ...++..+-..|...|++++|.+.|+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 169 DIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55444322222 2458899999999999999999999988763 2111 2357888899999999999999999988
Q ss_pred HHC----CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCchhhHHHH
Q 042756 251 ESD----GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLNSNDFPLSILEL 326 (425)
Q Consensus 251 ~~~----g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (425)
.+. +.+....++..+...|.+.|++++|...|++..+..-..+...+...+..+ +.+-..
T Consensus 249 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l---~~ly~~------------- 312 (378)
T 3q15_A 249 AKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFL---QAVYKE------------- 312 (378)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHH---HHHHSS-------------
T ss_pred HHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHHhC-------------
Confidence 761 223347889999999999999999999999987532211111222222111 111110
Q ss_pred HhhcchhhHHHHHHHHh-CCCCcc-cceeeccccchhcccCcchhHHHHHHHHHHHHHh
Q 042756 327 TEVLNEEEVSVVKELED-SSVLDE-AMKWDSGETKLDLHGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.+..+....+...++ .+..|+ ...+..+-..|...|++++| .+.|++..+
T Consensus 313 --~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A-----~~~~~~al~ 364 (378)
T 3q15_A 313 --TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQA-----AAFYRKVLK 364 (378)
T ss_dssp --SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHH
T ss_pred --CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHH
Confidence 001001111112221 111122 23456677889999999999 888887754
No 65
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=8.5e-08 Score=85.76 Aligned_cols=204 Identities=16% Similarity=0.126 Sum_probs=147.3
Q ss_pred hhHHHHHHHHHHhHHh-cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHH
Q 042756 34 RLTKQGQRFLSSLALA-VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPK 112 (425)
Q Consensus 34 ~~~~~a~~~~~~m~~~-~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~ 112 (425)
..+++|+++++..... .+....++..+-..+...|+++.|...+.+.+ ++++.....+ ......
T Consensus 22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~~~~~-~~~~~~ 86 (283)
T 3edt_B 22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDAL--------------AIREKTLGKD-HPAVAA 86 (283)
T ss_dssp HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHHTCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH--------------HHHHHHcCCc-chHHHH
Confidence 3556677777766543 23357888999999999999999888877753 3444432222 234567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC--CCCc
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSK----LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS--SSVY 186 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~----~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~ 186 (425)
++..+...|...|++++|.+.|++..+. .+...+....+|..+...|...|+++.+.+.++...+..... ....
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 8889999999999999999999997653 233345556678899999999999666655555555442211 1111
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-----------------------------------------------
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKG----------------------------------------------- 219 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------------------------------- 219 (425)
....++..+...|.+.|++++|.++|++.....
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 234689999999999999999999999987630
Q ss_pred CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 220 LEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 220 ~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..| ...++..+...|.+.|++++|.++|+...+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112 345788899999999999999999998765
No 66
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.95 E-value=2.5e-07 Score=97.95 Aligned_cols=301 Identities=11% Similarity=0.120 Sum_probs=171.5
Q ss_pred HHHHHHhhHHHHHHHHHHhHHh---cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCC-------CCCCchhhhHHHH
Q 042756 28 VQCLTARLTKQGQRFLSSLALA---VTRDSKAASRLISKFVASSPQFIALNALSHLLSPD-------TTHPRLSSLAFPL 97 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~---~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~-------~~~~~~~~~a~~l 97 (425)
-.....|...+|+++++..... +.-+....|.++.+..+.+ .....+...+.-.-. ....+.+++|..+
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD-~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKAD-RTRVMEYINRLDNYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhC-hhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 3445667888888888888744 2234566666777777663 233333333321000 0112367888888
Q ss_pred HHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Q 042756 98 YMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQ 177 (425)
Q Consensus 98 f~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~ 177 (425)
|++... .....+.++. ..|++++|.++.++.. .+. +|..+-.++.+.|+ ..+|.+.+.+
T Consensus 1072 YkKa~~------~~~A~~VLie---~i~nldrAiE~Aervn------~p~---vWsqLAKAql~~G~---~kEAIdsYiK 1130 (1630)
T 1xi4_A 1072 FRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPA---VWSQLAKAQLQKGM---VKEAIDSYIK 1130 (1630)
T ss_pred HHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHH---HHHHHHHHHHhCCC---HHHHHHHHHh
Confidence 887531 1112222222 6677888888777541 222 57788888888888 4444444433
Q ss_pred HhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 178 LVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 178 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
. -|...|.-++.+|.+.|++++|.+++...++.. ++....+.+..+|++.+++++...+. + .+
T Consensus 1131 A--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A 1131 A--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred c--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence 2 122377778888888888888888888766543 34344445777888887777544432 2 24
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc----cCCchhhHHHHHhhcchh
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN----SNDFPLSILELTEVLNEE 333 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 333 (425)
+...|..+-..|...|++++|..+|... ..|..+..++++.|+++.+.+ .....++.+.-..+...+
T Consensus 1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhh
Confidence 5556666777777777888887777773 377777777777777666533 111111111000010000
Q ss_pred hHHHHHHHHhCCCCcccceeeccccchhcccCcchhHHHHHHHHHHHHH
Q 042756 334 EVSVVKELEDSSVLDEAMKWDSGETKLDLHGMHLGSAYFIILQWMDEMR 382 (425)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~m~ 382 (425)
+-..+... .-.+..+...+..++.-|.+.|.+++| +.+++.-.
T Consensus 1265 Ef~LA~~c-gl~Iiv~~deLeeli~yYe~~G~feEA-----I~LlE~aL 1307 (1630)
T 1xi4_A 1265 EFRLAQMC-GLHIVVHADELEELINYYQDRGYFEEL-----ITMLEAAL 1307 (1630)
T ss_pred HHHHHHHH-HHhhhcCHHHHHHHHHHHHHcCCHHHH-----HHHHHHHh
Confidence 10111111 111223444556777778888888888 77776554
No 67
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.93 E-value=2.9e-06 Score=83.09 Aligned_cols=314 Identities=7% Similarity=-0.018 Sum_probs=222.9
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHh----cCChHHHHHHHHhhhCCCC---------------CCCchhhh
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVA----SSPQFIALNALSHLLSPDT---------------THPRLSSL 93 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~----~~~~~~a~~~~~~~l~~~~---------------~~~~~~~~ 93 (425)
.++.++|.+.|+...+. -+..++..|-..|.. .++.+.|...+.+....+. ..+...++
T Consensus 56 ~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 58999999999988764 677888889899988 8899999999988765432 12456889
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCc
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDK----QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSK 165 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~ 165 (425)
|.+.|+...+.+ ++..+..+-..|.. .++.++|.+.|++..+.+ .+ ..+..+-..|.. .++
T Consensus 134 A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~---~a~~~Lg~~y~~g~g~~~~- 202 (490)
T 2xm6_A 134 SVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NV---WSCNQLGYMYSRGLGVERN- 202 (490)
T ss_dssp HHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH---HHHHHHHHHHHHTSSSCCC-
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH---HHHHHHHHHHhcCCCCCcC-
Confidence 999999987776 56677777777877 789999999999987752 22 245667777776 566
Q ss_pred ccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----C
Q 042756 166 RGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----L 237 (425)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~ 237 (425)
.+++...+.+....++ ...+..+-..|.. .+++++|.++|++..+.| +...+..+-..|.. .
T Consensus 203 --~~~A~~~~~~a~~~~~-----~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~ 272 (490)
T 2xm6_A 203 --DAISAQWYRKSATSGD-----ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGA 272 (490)
T ss_dssp --HHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSS
T ss_pred --HHHHHHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCC
Confidence 6677777777666543 2378888888887 889999999999998865 45666667677777 8
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH---HH
Q 042756 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH-----NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI---MS 309 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~-----g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~---~~ 309 (425)
++.++|.+.|+...+.| +...+..|-..|... ++.++|..+|++..+.| +...+..+-..|... .+
T Consensus 273 ~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 273 KEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHH
T ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCccc
Confidence 99999999999988765 566777888888877 89999999999998876 345555555555442 24
Q ss_pred HHHhhc-------cCCchhhHH---HHHh----hcchhhHHH-HHHHHhCCCCcccceeeccccchhc----ccCcchhH
Q 042756 310 MLQDLN-------SNDFPLSIL---ELTE----VLNEEEVSV-VKELEDSSVLDEAMKWDSGETKLDL----HGMHLGSA 370 (425)
Q Consensus 310 ~~~~~~-------~~~~~~~~~---~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 370 (425)
..+++. ......... .|.. ..+.+.+.. +....+.+ +...+..|-..|.. .++.++|
T Consensus 347 ~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A- 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQA- 422 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHH-
Confidence 444322 111111111 2333 122333332 23333443 34456666666666 8999999
Q ss_pred HHHHHHHHHHHHh
Q 042756 371 YFIILQWMDEMRN 383 (425)
Q Consensus 371 ~~~~~~~~~~m~~ 383 (425)
.++|++..+
T Consensus 423 ----~~~~~~A~~ 431 (490)
T 2xm6_A 423 ----WAWFDTAST 431 (490)
T ss_dssp ----HHHHHHHHH
T ss_pred ----HHHHHHHHH
Confidence 999999987
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=98.93 E-value=5.1e-07 Score=85.41 Aligned_cols=218 Identities=7% Similarity=-0.059 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCC-hhHHHH
Q 042756 54 SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQ-REEAET 132 (425)
Q Consensus 54 ~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~ 132 (425)
..+|+.+-..+.+.|+++.|+ +.|+.....+ +-+...|+.+-..+.+.|+ +++|++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al---------------------~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~ 153 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAF---------------------KLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMN 153 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHH---------------------HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHH---------------------HHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHH
Confidence 456666666666666555544 4444444433 1267788999999999997 999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
.|++..+. .|.....|..+-.++.+.|+++++.+.++...+.-+. +...|+.+-.++.+.|++++|+..|
T Consensus 154 ~~~~al~l----~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~------~~~a~~~lg~~~~~~g~~~eAl~~~ 223 (382)
T 2h6f_A 154 YITAIIEE----QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK------NYHAWQHRQWVIQEFKLWDNELQYV 223 (382)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHH----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 99998875 2333457888999999999988777777766665332 3459999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc-CCCHHHH-----HHHHHHHHHCCCCcCHHhHHHHHHHHHhcC--CHHHHHHHHHH
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGR-LGLLEDM-----ERIVNQMESDGTRVDTVCSNMVLSSYGDHN--ELSRMVLWLQK 284 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~-~g~~~~a-----~~~~~~m~~~g~~~~~~~yn~li~~~~~~g--~~~~A~~l~~~ 284 (425)
+++.+.. .-+...|+.+-.++.+ .|..++| ...|+...+..- -+...|+.+...|...| +.++|++.+.+
T Consensus 224 ~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~ 301 (382)
T 2h6f_A 224 DQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLD 301 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHH
Confidence 9999853 2257899999999999 6665777 477887776532 25789999999999988 68999999988
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHHH
Q 042756 285 MKDSGIPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 285 M~~~g~~pd~~t~~~ll~~~~~~~ 308 (425)
+ +. -..+...+..+...|.+.+
T Consensus 302 ~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 302 L-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp H-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred h-cc-CCCCHHHHHHHHHHHHHHh
Confidence 8 32 2345577888888887765
No 69
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.92 E-value=8.6e-06 Score=79.72 Aligned_cols=298 Identities=8% Similarity=0.009 Sum_probs=204.1
Q ss_pred CCCHHHHHHHHHHHHh----cCChHHHHHHHHhhhCC---------------CCCCCchhhhHHHHHHHhhhcCCCccCH
Q 042756 51 TRDSKAASRLISKFVA----SSPQFIALNALSHLLSP---------------DTTHPRLSSLAFPLYMRITEESWFQWNP 111 (425)
Q Consensus 51 ~~d~~~~~~ll~~~~~----~~~~~~a~~~~~~~l~~---------------~~~~~~~~~~a~~lf~~m~~~~~~~~~~ 111 (425)
..|..++..+-..|.. .++.+.|+..+.+.... +...++..++|.+.|+...+.+ ++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CH
Confidence 3455666666666665 56666666666655433 2223557899999999987765 66
Q ss_pred HHHHHHHHHHHh----cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhhcCC
Q 042756 112 KLVAEIIAFLDK----QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSS 183 (425)
Q Consensus 112 ~~~~~ll~~~~~----~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~~~~~~~~~~~~~~~~~ 183 (425)
..+..|-..|.. .+++++|.+.|++..+.+. + ..+..|-..|.. .++ ..+++..+.+....+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~---~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~a~~~~- 181 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---D---SGQQSMGDAYFEGDGVTRD---YVMAREWYSKAAEQG- 181 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---H---HHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---H---HHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCC-
Confidence 677778888888 7899999999999876532 2 245566677766 455 677777777776654
Q ss_pred CCccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCC
Q 042756 184 SVYVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----LGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 184 ~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 255 (425)
+...+..+-..|.. .++.++|.+.|++..+.| +...+..+-..|.. .++.++|.+.|+...+.|
T Consensus 182 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 182 ----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred ----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 23488899999998 899999999999999875 56778888888876 889999999999988875
Q ss_pred CcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH-----HHHHHhhc------cCCch
Q 042756 256 RVDTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTI-----MSMLQDLN------SNDFP 320 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~----~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~-----~~~~~~~~------~~~~~ 320 (425)
+...+..+-..|.. .++.++|..+|++..+.| +...+..|-..|... ++..+++. ..+..
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 55677777777877 899999999999998775 444555555555553 34444422 11111
Q ss_pred -hhHH---HHHhhcc---hhhHH-HHHHHHhCCCCcccceeeccccchhc----ccCcchhHHHHHHHHHHHHHh
Q 042756 321 -LSIL---ELTEVLN---EEEVS-VVKELEDSSVLDEAMKWDSGETKLDL----HGMHLGSAYFIILQWMDEMRN 383 (425)
Q Consensus 321 -~~~~---~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~m~~ 383 (425)
.... .+...+. .+.+. .+.+..+. .+...+..+-..|.. .++.++| +++|++..+
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A-----~~~~~~A~~ 395 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQA-----AIWMRKAAE 395 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHH-----HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHH-----HHHHHHHHh
Confidence 1111 2222221 12222 22222333 245566666666766 7899999 999999887
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=98.91 E-value=4.8e-08 Score=95.54 Aligned_cols=198 Identities=9% Similarity=-0.117 Sum_probs=148.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHH
Q 042756 52 RDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAE 131 (425)
Q Consensus 52 ~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 131 (425)
.+...+..+-..+...|++ .++|++.|++..+.+. -+...|..+-..|.+.|++++|.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~--------------------~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDY--------------------SPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSC--------------------CHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhHHHHHHHHHHHHhcccc--------------------HHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555555544 0555555555444431 25778999999999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHhc---------CCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc
Q 042756 132 TLILETLSKLGSRERELVLFYCNLIDSFCKH---------DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202 (425)
Q Consensus 132 ~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 202 (425)
+.|++..+.. +. ...+..+-..|... |++ +++...+.+.....+ -+...|..+-.+|...
T Consensus 158 ~~~~~al~~~--p~---~~~~~~lg~~~~~~~~~~~~~~~g~~---~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 158 TCFSGALTHC--KN---KVSLQNLSMVLRQLQTDSGDEHSRHV---MDSVRQAKLAVQMDV---LDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHHHHHHTTC--CC---HHHHHHHHHHHTTCCCSCHHHHHHHH---HHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC--CC---HHHHHHHHHHHHHhccCChhhhhhhH---HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHH
Confidence 9999988753 22 24678888888888 884 455555555443321 1345899999999998
Q ss_pred --------CChhHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 203 --------GQPHEAENLIEEMRVKGLEP----SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 203 --------g~~~~a~~~~~~m~~~g~~p----~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
|++++|++.|++..+. .| +...|..+-.+|.+.|++++|.+.|+...+..- -+...+..+...+.
T Consensus 227 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 227 YFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLE 303 (474)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 9999999999999985 45 788999999999999999999999999887532 25678999999999
Q ss_pred hcCCHHHHHHHHHHH
Q 042756 271 DHNELSRMVLWLQKM 285 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M 285 (425)
..|++++|.+.+.++
T Consensus 304 ~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 304 FLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhccc
Confidence 999999998876554
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.91 E-value=2.7e-07 Score=84.61 Aligned_cols=208 Identities=12% Similarity=0.020 Sum_probs=150.7
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHH-------hcCCh-------hHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLD-------KQGQR-------EEAETLILETLSKLGSRERELVLFYCNLID 157 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~l~~~m~~~~~~~~~~~~~~y~~li~ 157 (425)
++|..+|++....+. -++..|..+...+. +.|++ ++|..+|++..+...+ .....|..+..
T Consensus 33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 678888888776542 36667777776665 45886 8999999998763222 22346888999
Q ss_pred HHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hh-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-
Q 042756 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQ-ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGY- 234 (425)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~- 234 (425)
.+.+.|+++ ++...+.+... ..|+ .. .|..+...+.+.|++++|..+|++..+.+ +++...|.......
T Consensus 108 ~~~~~~~~~---~A~~~~~~al~----~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~ 179 (308)
T 2ond_A 108 YEESRMKYE---KVHSIYNRLLA----IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEY 179 (308)
T ss_dssp HHHHTTCHH---HHHHHHHHHHT----SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHH
T ss_pred HHHhcCCHH---HHHHHHHHHHh----ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 999999955 45555555443 2233 22 89999999999999999999999998853 23344554443332
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHHHHHHH
Q 042756 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFS--VRTYNSVLNSCSTIMSML 311 (425)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd--~~t~~~ll~~~~~~~~~~ 311 (425)
...|+.++|.++|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. +.|+ ...|..++....+.|+.+
T Consensus 180 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~ 258 (308)
T 2ond_A 180 YCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 258 (308)
T ss_dssp HTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 23799999999999887652 2368899999999999999999999999998863 4663 456777777666666554
Q ss_pred Hh
Q 042756 312 QD 313 (425)
Q Consensus 312 ~~ 313 (425)
.+
T Consensus 259 ~a 260 (308)
T 2ond_A 259 SI 260 (308)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=7.7e-07 Score=84.05 Aligned_cols=237 Identities=9% Similarity=0.086 Sum_probs=168.2
Q ss_pred HHHhhHHHHHHHHHHhHHh--cCCC----HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 31 LTARLTKQGQRFLSSLALA--VTRD----SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~--~~~d----~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
...|+.++|.+.|+..... -.+| ..++..+-..|...|+++.|...+.+. ++++......
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a--------------l~~~~~~~~~ 177 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA--------------LDIYQNHPLY 177 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHTSTTC
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH--------------HHHHHhCCCc
Confidence 4567889999999998776 3344 467888888899999988888777664 4444432211
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (425)
......+++.+-..|...|++++|.+.|++..+. ..........++..+-..|...|+++.+.+.+....+.....
T Consensus 178 --~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 178 --SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred --hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 0123567888999999999999999999987652 112233334577888899999999665555555444433221
Q ss_pred CCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCC
Q 042756 183 SSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG----LEPSGFEYKCIIYGYGRLGL---LEDMERIVNQMESDGT 255 (425)
Q Consensus 183 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~ty~~ll~~~~~~g~---~~~a~~~~~~m~~~g~ 255 (425)
... ....++..+-..|.+.|++++|...|++..+.. -......+..+-..|...|+ +++|..+++. .+.
T Consensus 256 ~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~ 331 (378)
T 3q15_A 256 VPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNL 331 (378)
T ss_dssp CGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTC
T ss_pred CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCC
Confidence 111 125688999999999999999999999998752 12224466777777888888 7777777775 332
Q ss_pred Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 256 RV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 256 ~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.| ....+..+...|...|++++|...|++..+
T Consensus 332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 345677888999999999999999998754
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.86 E-value=3.4e-07 Score=76.71 Aligned_cols=167 Identities=15% Similarity=0.020 Sum_probs=129.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+...|..+-..+...|+++.|...+.+.+. .+ +-++.++..+...|.+.|++++|.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~---------------------~~--p~~~~~~~~la~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK---------------------AD--PNNVETLLKLGKTYMDIGLPNDAIE 60 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------------HC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------hC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 567888999999999977777666666542 22 1267788889999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
.+......... . ...+..+...+...++++.+.+.+....+..+ -+...+..+-..|.+.|++++|++.|
T Consensus 61 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~------~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (184)
T 3vtx_A 61 SLKKFVVLDTT-S---AEAYYILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGEHDKAIEAY 130 (184)
T ss_dssp HHHHHHHHCCC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhcCch-h---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHhCCchhHHHHH
Confidence 99998775332 2 23566777788888996555555554444322 23458999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 213 EEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 213 ~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
++..+.. +-+..+|..+-.+|.+.|++++|.+.|+...+.
T Consensus 131 ~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 131 EKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 9998853 235778999999999999999999999998875
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.86 E-value=3.3e-06 Score=79.24 Aligned_cols=266 Identities=7% Similarity=-0.099 Sum_probs=170.9
Q ss_pred HHHHhhHHHHHHHHHHhHHh-cCCCHH----HHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhc
Q 042756 30 CLTARLTKQGQRFLSSLALA-VTRDSK----AASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEE 104 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~-~~~d~~----~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~ 104 (425)
.+..|++++|.+.++..... ...+.. +++.+-..+...|+++.|...+.+.+ .+....
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~--- 86 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE--------------QMARQH--- 86 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------HHHHHT---
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH--------------HHHHhc---
Confidence 34578999999999998776 333332 55666677777888888877776643 222221
Q ss_pred CCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh
Q 042756 105 SWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL----GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN 180 (425)
Q Consensus 105 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~----~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~ 180 (425)
+.......++..+-..+...|++++|.+.+++..+.. ....+.....+..+-..+...|+++.+.+.++...+...
T Consensus 87 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 1111123446667788899999999999999876532 211133344566788888999996665555555544433
Q ss_pred cCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS--GFEYK----CIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 181 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ty~----~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
..... ....+|..+...+...|++++|...+++.....-.++ ..... .....+...|++++|...++......
T Consensus 167 ~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 167 SYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp TSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred ccCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 22111 1235788888999999999999999999876421211 11111 23345779999999999999876543
Q ss_pred CCc---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHH-HHHHHHHHHHHHHHHHHh
Q 042756 255 TRV---DTVCSNMVLSSYGDHNELSRMVLWLQKMKD----SGIPFSVR-TYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 255 ~~~---~~~~yn~li~~~~~~g~~~~A~~l~~~M~~----~g~~pd~~-t~~~ll~~~~~~~~~~~~ 313 (425)
..+ ....+..+...+...|++++|..++++... .|..++.. .+..+-.++...|+..++
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 312 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 312 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHH
Confidence 211 133577888999999999999999998754 23222221 444444455555555444
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=98.85 E-value=6.8e-07 Score=74.24 Aligned_cols=165 Identities=10% Similarity=0.014 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHH
Q 042756 55 KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134 (425)
Q Consensus 55 ~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 134 (425)
..|..+...+...|+++.|...+.+++.. .+.+..++..+...+...|++++|.+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 65 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA-----------------------DAFDVDVALHLGIAYVKTGAVDRGTELL 65 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCT-----------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------------------CccChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45666777777788777777777666432 1235778888999999999999999999
Q ss_pred HHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHH
Q 042756 135 LETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEE 214 (425)
Q Consensus 135 ~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 214 (425)
++..+... .....+..+...+...|+++.+.+.++...+. . ..+...|..+...+.+.|++++|.+.|++
T Consensus 66 ~~~~~~~~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 66 ERSLADAP----DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA---N---PINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp HHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C---TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhcCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---C---cHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99887522 22346788889999999955554444444443 2 12446899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 215 MRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 215 m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..... +.+..++..+...+.+.|++++|.+.++...+.
T Consensus 136 ~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 136 ALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 98863 345789999999999999999999999988764
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.82 E-value=1.2e-07 Score=97.03 Aligned_cols=165 Identities=12% Similarity=-0.024 Sum_probs=135.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++..|+.+-..|.+.|++++|++.|++..+. .|+....|..+-.+|.+.|+++++.+.++...+..+. +.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~------~~ 77 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT------FA 77 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Confidence 4678999999999999999999999998875 2233457889999999999965555555544443221 24
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..|+.+-.+|.+.|++++|++.|++..+. .| +...|+.+-.+|.+.|++++|.+.|+...+..- -+...|..+...
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~ 154 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHC 154 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhH
Confidence 59999999999999999999999999884 45 477999999999999999999999999887531 257899999999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 042756 269 YGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~ 287 (425)
|...|++++|.+.|++..+
T Consensus 155 l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 155 LQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHTTCCTTHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHH
Confidence 9999999999998888753
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.76 E-value=1.2e-06 Score=79.61 Aligned_cols=175 Identities=11% Similarity=0.012 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHhc-CCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLG--SRERELVLFYCNLIDSFCKH-DSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~y~~li~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
..+|+.+-..|.+.|++++|...|++..+... ........+|+.+-..|... |+++.+.+.++...+..+......-
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 56889999999999999999999998765211 11222234678888899986 9966665555555554332211100
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG------FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD--- 258 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--- 258 (425)
...+|+.+...|.+.|++++|+..|++.......... ..|..+..++...|++++|...|+...+. .|+
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~ 234 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCC
Confidence 1347889999999999999999999999885422211 15777888899999999999999987653 232
Q ss_pred ---HHhHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 042756 259 ---TVCSNMVLSSYG--DHNELSRMVLWLQKMKD 287 (425)
Q Consensus 259 ---~~~yn~li~~~~--~~g~~~~A~~l~~~M~~ 287 (425)
...+..++.+|. ..+++++|++.|+++..
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 223455666664 45678889888877653
No 78
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.74 E-value=3.6e-06 Score=83.33 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=157.9
Q ss_pred HHHHHHHHHhHHhcCCCHHHHHHHHHHHHh-------cCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCcc
Q 042756 37 KQGQRFLSSLALAVTRDSKAASRLISKFVA-------SSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQW 109 (425)
Q Consensus 37 ~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~-------~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~ 109 (425)
+.+..+|++.....+.+...|..+...+.+ .|+.+.+.. ..++|..+|++..+.- .+-
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~--------------~~~~A~~~~~~Al~~~-~p~ 319 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKL--------------FSDEAANIYERAISTL-LKK 319 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHH--------------HHHHHHHHHHHHTTTT-CSS
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhh--------------hhHHHHHHHHHHHHHh-Ccc
Confidence 356667777776655677888887777765 455441110 1235666666654311 223
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+...+..+...+.+.|++++|.++|++..+.. +... ...|..+...+.+.|+. +++...+.+.....+. .+..
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~-~~~~~~~~~~~~~~~~~---~~A~~~~~~Al~~~~~-~~~~ 392 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDP-TLVYIQYMKFARRAEGI---KSGRMIFKKAREDART-RHHV 392 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCTTC-CTHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCc-hHHHHHHHHHHHHhcCH---HHHHHHHHHHHhccCC-chHH
Confidence 67788889999999999999999999998742 2211 23678888888888884 4555555555433211 1111
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcC--HHhHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDG-TRVD--TVCSNMV 265 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~--~~~yn~l 265 (425)
....+.+ .+...|+.++|..+|++..+. .| +...|..++..+.+.|+.++|..+|+.....+ ..|+ ...|...
T Consensus 393 ~~~~a~~-~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 393 YVTAALM-EYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp HHHHHHH-HHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred HHHHHHH-HHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 1222222 233689999999999998875 34 57899999999999999999999999998763 2332 5589999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 042756 266 LSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 266 i~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
+......|+.+.+.++++++.+.
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998754
No 79
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.71 E-value=1.2e-06 Score=68.46 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=95.1
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 152 y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
|..+...+...|+++ ++...+.+.....+ .+...|..+...+...|++++|..+|+++...+ +.+...+..+.
T Consensus 4 ~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYD---EAIEYYQKALELDP---RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHTCHH---HHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHcCcHH---HHHHHHHHHHHcCC---cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 456666777777743 44444444332221 234578888888888899999999999888753 33567888888
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
..+...|++++|.++++.+.+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88999999999999999887754 235778888899999999999999999988754
No 80
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.70 E-value=4.4e-06 Score=76.47 Aligned_cols=227 Identities=8% Similarity=-0.020 Sum_probs=136.1
Q ss_pred HHhhHHHHHHHHHHhHHhc-------CCCH----HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHH
Q 042756 32 TARLTKQGQRFLSSLALAV-------TRDS----KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMR 100 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~-------~~d~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~ 100 (425)
..|...+|.+++++..+.. .+|. ..|+.....|...|+++.|...+.+. .+++..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~a--------------l~~~~~ 68 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQE--------------AEAHAN 68 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------HHHHHH
Confidence 3577888888888777652 2332 23444444455555555554444432 223332
Q ss_pred hhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 101 ITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 101 m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
... ...-..+|+.+...|.+.|++++|.+.|++..+.. .........++..+-..|.+ |+++.+.+.++...+.
T Consensus 69 ~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 69 NRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp TTC---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred cCC---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 211 11124578888888999999999999998866531 11122223467777778877 8866555555554444
Q ss_pred hhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 179 VNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 179 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
.+......--..+|+.+-..|.+.|++++|+..|++.... +..++ ...+..+..++...|++++|...|+... .
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 3332111111347888888899999999999999888763 22222 2266667777788899999999888876 3
Q ss_pred CCCcC------HHhHHHHHHHHHhcCCHHHHHH
Q 042756 254 GTRVD------TVCSNMVLSSYGDHNELSRMVL 280 (425)
Q Consensus 254 g~~~~------~~~yn~li~~~~~~g~~~~A~~ 280 (425)
.|+ ......++.++ ..|+.+.+.+
T Consensus 224 --~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 224 --IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp --STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred --CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 232 22344455555 5666655544
No 81
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.69 E-value=8e-06 Score=86.82 Aligned_cols=253 Identities=12% Similarity=0.059 Sum_probs=167.0
Q ss_pred HhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCC------CCchhhhHHHHHHHhhhcCC
Q 042756 33 ARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTT------HPRLSSLAFPLYMRITEESW 106 (425)
Q Consensus 33 ~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~------~~~~~~~a~~lf~~m~~~~~ 106 (425)
+.+..+..+..+.+.... ...+-..+...|.+++|..++.+.-..... .-+.+++|.++.++.
T Consensus 1034 kaD~~Rv~eyI~kLd~~d------~~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv----- 1102 (1630)
T 1xi4_A 1034 KADRTRVMEYINRLDNYD------APDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC----- 1102 (1630)
T ss_pred HhChhhHHHHHHHhhhcc------HHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----
Confidence 335555555555543211 333556666677777777777775211000 001344455554432
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
-++.+|..+-.++.+.|++++|.+-|.+- ..+ ..|..++.++.+.|++ +++.+.+.......
T Consensus 1103 --n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~---say~eVa~~~~~lGky---EEAIeyL~mArk~~---- 1164 (1630)
T 1xi4_A 1103 --NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDP---SSYMEVVQAANTSGNW---EELVKYLQMARKKA---- 1164 (1630)
T ss_pred --CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CCh---HHHHHHHHHHHHcCCH---HHHHHHHHHHHhhc----
Confidence 24668888999999999999999999663 122 2577899999999995 45555554433322
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
++....+.+..+|++.+++++...+. . .|+...|..+-..|...|++++|..+|... ..|..+.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA 1228 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 1228 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHH
Confidence 22223445999999999988644442 1 456677888999999999999999999984 3799999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhhc--------cCCchhhHHHHHhhcchhhHH
Q 042756 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQDLN--------SNDFPLSILELTEVLNEEEVS 336 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 336 (425)
..|++.|++++|.+.+++.. +..+|.-+-.+|...|++..+.. +..+..+++.|.+.|..+++.
T Consensus 1229 ~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998763 56888888888887777777643 112333344455555544444
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.69 E-value=1.9e-05 Score=74.07 Aligned_cols=239 Identities=12% Similarity=-0.004 Sum_probs=161.5
Q ss_pred HHHHhhHHHHHHHHHHhHHh--cCCCH----HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhh
Q 042756 30 CLTARLTKQGQRFLSSLALA--VTRDS----KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITE 103 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~--~~~d~----~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~ 103 (425)
....|++++|.+.+++.... -.++. .+++.+-..+...|+++.|...+.+.+ ++......
T Consensus 63 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al--------------~~~~~~~~ 128 (373)
T 1hz4_A 63 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF--------------QLINEQHL 128 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTC
T ss_pred HHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHhcc
Confidence 34578999999999988776 33333 335667777888888888877776643 23332211
Q ss_pred cCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC
Q 042756 104 ESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR-ERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS 182 (425)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (425)
.. .......+..+-..+...|++++|...+++..+..... .+....+|..+-..+...|+++.+.+.++...+.....
T Consensus 129 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~ 207 (373)
T 1hz4_A 129 EQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNG 207 (373)
T ss_dssp TT-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred cc-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence 11 11234566778888999999999999999987643221 11223467788888999999666665555555443322
Q ss_pred CCCccChhHHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--
Q 042756 183 SSVYVKRQALK-----SMISGLCEMGQPHEAENLIEEMRVKGLEP---SGFEYKCIIYGYGRLGLLEDMERIVNQMES-- 252 (425)
Q Consensus 183 ~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-- 252 (425)
.. | ..|. ..+..+...|++++|...+++.......+ ....+..+...+...|++++|...++....
T Consensus 208 ~~--~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~ 283 (373)
T 1hz4_A 208 KY--H--SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENA 283 (373)
T ss_dssp CC--C--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Cc--c--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 1 1222 23345789999999999999887643211 133567788899999999999999998754
Q ss_pred --CCCCcCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 253 --DGTRVDT-VCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 253 --~g~~~~~-~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.|..++. ..+..+-.++...|+.++|...|++...
T Consensus 284 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 284 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2333333 3677778889999999999999998754
No 83
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.65 E-value=2.1e-06 Score=66.94 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
.|..+...+...|++++|.++|+++.+.... . ...+..+...+...|+++. +...+.+.....+ .+...|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~~a~~~~~~~~~~~---A~~~~~~~~~~~~---~~~~~~ 72 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-S---AEAWYNLGNAYYKQGDYDE---AIEYYQKALELDP---RSAEAW 72 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-C---HHHHHHHHHHHHHHTCHHH---HHHHHHHHHHHCT---TCHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-c---hhHHHHHHHHHHHhcCHHH---HHHHHHHHHHHCC---CchHHH
Confidence 4667888899999999999999998875321 2 3367788888999999554 4444444433221 234588
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..+...+.+.|++++|.++|+++.... +.+..++..+...+.+.|++++|.+.++.+.+.
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999999999999999999999998863 335778889999999999999999999988764
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.65 E-value=1.5e-06 Score=78.97 Aligned_cols=170 Identities=9% Similarity=-0.137 Sum_probs=125.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 118 IAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 118 l~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
...|...|++++|.+.|++..+.. ....+....+|+.+-..|.+.|+++++.+.++...+.....+...--..+|+.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 456778999999999998876521 112233345789999999999997766666555555443322111113588999
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCH------HhHH
Q 042756 196 ISGLCEM-GQPHEAENLIEEMRVKG----LEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDT------VCSN 263 (425)
Q Consensus 196 i~~~~~~-g~~~~a~~~~~~m~~~g----~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~------~~yn 263 (425)
-..|... |++++|+..|++..+.. -.+. ..+|..+...+.+.|++++|...|+...+....... ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 99999999999987631 1111 357889999999999999999999998875432222 2578
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
.+..++...|++++|...|++..+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 888899999999999999999875
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.62 E-value=4.3e-06 Score=72.56 Aligned_cols=153 Identities=10% Similarity=-0.046 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
|+..+...-..+.+.|++++|.+.|++..+....+.. ..+..+-.++.+.|++ +++...+.+.....+. +.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~~~~~~~---~~A~~~~~~al~~~p~---~~ 76 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---VTAYNCGVCADNIKKY---KEAADYFDIAIKKNYN---LA 76 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---HHHHHHHHHHHHTTCH---HHHHHHHHHHHHTTCS---HH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhcH---HHHHHHHHHHHHhCcc---hH
Confidence 5567777788888889999999999888765331222 2344477788888884 4444444444433211 34
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H-------HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-G-------FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD--- 258 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~-------~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--- 258 (425)
..|..+-..|...|++++|.+.|++..+. .|+ . ..|..+-..+.+.|++++|.+.|+...+. .|+
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 152 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWK 152 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCccc
Confidence 57888888888899999999999888874 333 3 45777777788888999999999888765 344
Q ss_pred HHhHHHHHHHHHhcCCH
Q 042756 259 TVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 259 ~~~yn~li~~~~~~g~~ 275 (425)
...|..+-..|...|+.
T Consensus 153 ~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 153 TDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777766665
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.62 E-value=8.5e-07 Score=90.73 Aligned_cols=165 Identities=15% Similarity=0.068 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAET 132 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 132 (425)
+..+|+.|-..|.+.|++++|...+.+.+ +.+ +-+...|..+-..|.+.|++++|.+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl---------------------~l~--P~~~~a~~nLg~~l~~~g~~~eA~~ 64 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKAL---------------------EVF--PEFAAAHSNLASVLQQQGKLQEALM 64 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------HHC--SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------HhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 46788888888888887776666666654 222 1257789999999999999999999
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 133 LILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 133 l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
.|++..+. .|+....|..+-.+|.+.|+++++.+.++...+..+. +...|+.+-.+|.+.|++++|++.|
T Consensus 65 ~~~~Al~l----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~------~~~a~~~Lg~~~~~~g~~~eAi~~~ 134 (723)
T 4gyw_A 65 HYKEAIRI----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA------FADAHSNLASIHKDSGNIPEAIASY 134 (723)
T ss_dssp HHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998875 2333457899999999999965555555544443221 2459999999999999999999999
Q ss_pred HHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 213 EEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 213 ~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
++..+. .|+ ...|..+..++...|++++|.+.++...+
T Consensus 135 ~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 135 RTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999884 564 67999999999999999999998887654
No 87
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.60 E-value=3.3e-06 Score=77.31 Aligned_cols=173 Identities=6% Similarity=-0.142 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhc--CCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKL--GSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~--~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
.|......|...|++++|.+.|.+..+.. .........+|+.+...|.+.|+++.+.+.++...+..........-..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45556677888999999999998876521 1122333457888999999999988887777776666543322212245
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcC-HH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK----GLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRVD-TV 260 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~ 260 (425)
+|+.+-..|.+ |++++|+..|++.... |-.+ ...++..+-..|.+.|++++|...|+...+. +..++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 88889999988 9999999999988753 1111 1458888999999999999999999988752 22222 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 042756 261 CSNMVLSSYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 261 ~yn~li~~~~~~g~~~~A~~l~~~M~ 286 (425)
.|..+...+...|++++|...|++..
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 67777788888899999999999987
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.54 E-value=1.2e-05 Score=71.44 Aligned_cols=196 Identities=10% Similarity=-0.035 Sum_probs=135.9
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.++..+-..-..+.+.|++++|.+.|++..+.... .+.....+..+-.+|.+.|+++.+.+.++.+.+..+... ..
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~ 88 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP---RV 88 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT---TH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc---hh
Confidence 35566666788888999999999999998775322 211133567788889999996655555555555432221 11
Q ss_pred hhHHHHHHHHHHh--------cCChhHHHHHHHHHHHcCCCCC-HHHH-----------------HHHHHHHHcCCCHHH
Q 042756 189 RQALKSMISGLCE--------MGQPHEAENLIEEMRVKGLEPS-GFEY-----------------KCIIYGYGRLGLLED 242 (425)
Q Consensus 189 ~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~-~~ty-----------------~~ll~~~~~~g~~~~ 242 (425)
...+..+-.++.+ .|++++|...|++..... |+ .... -.+-..|.+.|++++
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 3467788888888 999999999999998752 33 2223 455678999999999
Q ss_pred HHHHHHHHHHCCCC--cCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHH
Q 042756 243 MERIVNQMESDGTR--VDTVCSNMVLSSYGDH----------NELSRMVLWLQKMKDSGIPFSVR----TYNSVLNSCST 306 (425)
Q Consensus 243 a~~~~~~m~~~g~~--~~~~~yn~li~~~~~~----------g~~~~A~~l~~~M~~~g~~pd~~----t~~~ll~~~~~ 306 (425)
|...|+...+..-. .....+..+..+|... |++++|...|++..+. .|+.. ....+-..+..
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHH
Confidence 99999998875321 1345777888888866 8999999999998875 45543 33444444444
Q ss_pred HHHHHH
Q 042756 307 IMSMLQ 312 (425)
Q Consensus 307 ~~~~~~ 312 (425)
.++++.
T Consensus 245 ~~~~~~ 250 (261)
T 3qky_A 245 LTELEG 250 (261)
T ss_dssp HHHHHT
T ss_pred HHHhhh
Confidence 555433
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.50 E-value=8.7e-05 Score=67.16 Aligned_cols=255 Identities=7% Similarity=-0.033 Sum_probs=153.0
Q ss_pred cccccchhHHHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCCh---------HHHHHHHHhhhCCCCCCC
Q 042756 18 CRLRQQRLTLVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQ---------FIALNALSHLLSPDTTHP 88 (425)
Q Consensus 18 ~~~~~~~~~~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~---------~~a~~~~~~~l~~~~~~~ 88 (425)
+..|.---++.+....|....+.+=...+. ..-+...---+.+++...|.+ ..++.++.+.+..
T Consensus 11 ~~~~~~lf~ikn~fy~G~yq~~i~e~~~~~--~~~~~~~~~~~~Rs~iAlg~~~~~~~~~~~~~a~~~la~~~~~----- 83 (310)
T 3mv2_B 11 SQDPMDYFNIKQNYYTGNFVQCLQEIEKFS--KVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLDLYVQFLDT----- 83 (310)
T ss_dssp ----CCTHHHHHHHTTTCHHHHTHHHHTSS--CCCCHHHHHHHHHHHHHTTCCCCCCSSSTTHHHHHHHHHHHTT-----
T ss_pred CCCcHHHHHHHHHHHhhHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHhcc-----
Confidence 333443334566677777777766222211 112222333344666655433 2355555555431
Q ss_pred chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 89 ~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
.|+..|++....+ .++..++-.+..++...|++++|++++.+....+. .......+..++..+.+.|+.+.+
T Consensus 84 ----~a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~--~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 84 ----KNIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE--AEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp ----TCCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC--STTHHHHHHHHHHHHHHTTCHHHH
T ss_pred ----cHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC--CcCcHHHHHHHHHHHHHCCCHHHH
Confidence 1556666665443 34555556788888899999999999988654322 112334677889999999995555
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~ 244 (425)
.+.++.+.+..+.. +..+..+...+..++.. .++..+|+.+|+++.+. .|+..+-..++.++.+.|++++|+
T Consensus 156 ~k~l~~~~~~~~d~--~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNAIEDT--VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHHSCHH--HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhcCccc--cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 55555444432100 00123455666666333 34899999999998764 466555566666899999999999
Q ss_pred HHHHHHHHC-----CC----CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 245 RIVNQMESD-----GT----RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 245 ~~~~~m~~~-----g~----~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
+.++.+.+. +- .-|..+.-.+|......|+ +|.+++.++.+. .|+..
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~hp 287 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEHA 287 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCCH
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCCh
Confidence 999876643 10 2366777555555555676 888999998875 46554
No 90
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=98.48 E-value=8.5e-06 Score=70.68 Aligned_cols=120 Identities=6% Similarity=-0.186 Sum_probs=97.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
|...|...-..+.+.|++++|.+.|++..+..-.++...+..+-.++.+.|++++|.+.|+...+..- -+...|..+-.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHH
Confidence 34588888999999999999999999999875447788888899999999999999999999887642 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNSVLNSCSTIMSM 310 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~~~~~~ 310 (425)
.|...|++++|+..|++..+. .|+ ...+..+...+...|..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~ 126 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQK 126 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHH
Confidence 999999999999999998864 343 44445555555555554
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.41 E-value=2.3e-05 Score=67.19 Aligned_cols=168 Identities=14% Similarity=-0.014 Sum_probs=114.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHH----------------HHHHHHhcCCcccHHHHHHHHHHHhh
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCN----------------LIDSFCKHDSKRGFDDTYARLNQLVN 180 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~----------------li~~~~~~g~~~~~~~~~~~~~~~~~ 180 (425)
....+.+.|++++|.+.|++..+. .|+....|.. +-..|.+.|+++++.+.++...+..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence 445667889999999999998764 3333445555 78888999995555544444444322
Q ss_pred cCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCc
Q 042756 181 SSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGL--LEDMERIVNQMESDGTRV 257 (425)
Q Consensus 181 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~ 257 (425)
. +...|..+-..|...|++++|...|++..+. .| +..++..+-.+|...|+ .+.+...+..... ..|
T Consensus 86 ~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~ 155 (208)
T 3urz_A 86 N------NVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTK 155 (208)
T ss_dssp T------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCH
T ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCc
Confidence 1 3458999999999999999999999999885 45 46788888887766654 3445555555432 223
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 300 (425)
....+..+-.++...|++++|...|++..+. .|+......+
T Consensus 156 ~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 3334444555666789999999999998854 6886544443
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.39 E-value=1.6e-05 Score=72.06 Aligned_cols=167 Identities=12% Similarity=-0.025 Sum_probs=119.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhH---HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC---
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSREREL---VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK--- 188 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~---~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~--- 188 (425)
...+..+.+.|++++|.+++++..+.... .+.. ...|..+...+...++ .+++...+.+....... .++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~---~~~Ai~~~~~al~~~~~-~~~~~~ 153 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLT-GIDVYQ 153 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSC---HHHHHHHHHHHHHTCCC-CSCTTH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccC---HHHHHHHHHHHHHHhcc-cccHHH
Confidence 33477889999999999999998764322 2221 2234446666666777 45555555555442111 122
Q ss_pred -hhHHHHHHHHHHhcCChhHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc
Q 042756 189 -RQALKSMISGLCEMGQPHEAENLIEEMRVK-----GLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRV 257 (425)
Q Consensus 189 -~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~ 257 (425)
..+|+.+-..|...|++++|+..|++..+. +..+. ..+|..+...|.+.|++++|.+.++...+. +..+
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 347999999999999999999999999842 22233 338889999999999999999999977642 2222
Q ss_pred C-HHhHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 042756 258 D-TVCSNMVLSSYGDHNE-LSRMVLWLQKMK 286 (425)
Q Consensus 258 ~-~~~yn~li~~~~~~g~-~~~A~~l~~~M~ 286 (425)
. ..+|..+-..|.+.|+ .++|.+.|++..
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 2 6789999999999995 699999998875
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.39 E-value=4e-05 Score=66.48 Aligned_cols=172 Identities=11% Similarity=-0.019 Sum_probs=111.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++..+-.+...+.+.|++++|.+.|+++.+.... .+.....+..+..+|.+.|+++.+.+.++.+.+..+.... .|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~-- 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-ID-- 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HH--
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HH--
Confidence 3444445666677778888888888887764222 1111224556677777888855555555544443322211 01
Q ss_pred hHHHHHHHHHH------------------hcCChhHHHHHHHHHHHcCCCCCHH-HH-----------------HHHHHH
Q 042756 190 QALKSMISGLC------------------EMGQPHEAENLIEEMRVKGLEPSGF-EY-----------------KCIIYG 233 (425)
Q Consensus 190 ~~~~~li~~~~------------------~~g~~~~a~~~~~~m~~~g~~p~~~-ty-----------------~~ll~~ 233 (425)
..+..+-.++. ..|++++|...|++..+. -|+.. .+ -.+-..
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~ 156 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKYEYSVAEY 156 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13333333333 357899999999999875 34321 22 234556
Q ss_pred HHcCCCHHHHHHHHHHHHHCCCCcC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 234 YGRLGLLEDMERIVNQMESDGTRVD----TVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 234 ~~~~g~~~~a~~~~~~m~~~g~~~~----~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
|.+.|++++|...|+.+.+.. |+ ...+..+..+|.+.|+.++|.+.|+.+...+
T Consensus 157 ~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 157 YTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 889999999999999988752 33 3578889999999999999999999888763
No 94
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=7.8e-06 Score=69.16 Aligned_cols=162 Identities=12% Similarity=-0.052 Sum_probs=108.1
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh
Q 042756 122 DKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE 201 (425)
Q Consensus 122 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 201 (425)
...|++++|.++++.+.. . +.....++..+-..+...|+++.+.+.++...+.....+.......+++.+-..|..
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--H--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHT--S--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC--C--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 456888888885554432 1 112244677777888888886665555555555443332222334578888889999
Q ss_pred cCChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCc-CHHhHHHHHHHHH
Q 042756 202 MGQPHEAENLIEEMRVK----GLEP--SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRV-DTVCSNMVLSSYG 270 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~----g~~p--~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~yn~li~~~~ 270 (425)
.|++++|.+.|++..+. +-.| ....+..+-..+...|++++|...+++..+. +-.. -..++..+-..|.
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999887654 2122 2346778888899999999999999877532 2111 2345678888899
Q ss_pred hcCCHHHHHHHHHHHHh
Q 042756 271 DHNELSRMVLWLQKMKD 287 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~ 287 (425)
..|++++|.+.|++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 99999999999988753
No 95
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.32 E-value=7.5e-05 Score=72.26 Aligned_cols=253 Identities=11% Similarity=-0.014 Sum_probs=148.1
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCCh---HHHHHHHHhhhCC---------------CCCCCc
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQ---FIALNALSHLLSP---------------DTTHPR 89 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~---~~a~~~~~~~l~~---------------~~~~~~ 89 (425)
...+..|++++|.++|+...+.- +..++..|-..|...|.. ++|...+.+.... +...+.
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g--~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG--YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 34466789999999999987652 333344444445555555 6777766655433 111223
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhH---HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcc
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREE---AETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR 166 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~---A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~ 166 (425)
..++|++.|+.....+. ++ .+..|-..|...+..++ +.+.+......+.+ . ....|-..|...+.++
T Consensus 89 ~~~~A~~~~~~Aa~~g~--~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~---~---a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGE--GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP---E---AGLAQVLLYRTQGTYD 158 (452)
T ss_dssp HHHHHHHHHHHHHHTTC--SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT---T---HHHHHHHHHHHHTCGG
T ss_pred CHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH---H---HHHHHHHHHHcCCCcc
Confidence 56788888888777652 12 45556666666554443 44444444333221 1 3455666677666655
Q ss_pred cHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC----CC
Q 042756 167 GFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG---QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL----GL 239 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~----g~ 239 (425)
...+....+.+....+. |+ .+..+-..|.+.| +.++|++.|++..+.| .++...+..+-..|... ++
T Consensus 159 ~~~~~a~~~~~~a~~~~---~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 159 QHLDDVERICKAALNTT---DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp GGHHHHHHHHHHHTTTC---TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCC
T ss_pred cCHHHHHHHHHHHHcCC---HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCC
Confidence 44443444444433332 33 8888888899999 9999999999998876 34555556666666554 78
Q ss_pred HHHHHHHHHHHHHCCCCcCHHhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 240 LEDMERIVNQMESDGTRVDTVCSNMVLSS-Y--GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 240 ~~~a~~~~~~m~~~g~~~~~~~yn~li~~-~--~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
.++|.+.|+... .| +...+..|-.. | ...|+.++|.++|++..+.| +...+..|-..|.
T Consensus 233 ~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 233 EKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 999999999877 33 55666666666 4 46889999999999988877 4555555555554
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.31 E-value=6.6e-05 Score=64.51 Aligned_cols=182 Identities=9% Similarity=0.009 Sum_probs=138.2
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDT 171 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~ 171 (425)
.+|++.|+...+.+ ++..+..+-..|...+++++|.+.|++..+.+ .+. .+..|-..|...|......++
T Consensus 3 ~eA~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~---a~~~lg~~y~~~g~~~~~~~A 72 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGD---ALALLAQLKIRNPQQADYPQA 72 (212)
T ss_dssp -CTTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHH---HHHHHHHHTTSSTTSCCHHHH
T ss_pred chHHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHH---HHHHHHHHHHcCCCCCCHHHH
Confidence 35677777777665 77788888889999999999999999987653 222 455666667663322347788
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHHHh----cCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc----CCCHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGLCE----MGQPHEAENLIEEMRVKGLE-PSGFEYKCIIYGYGR----LGLLED 242 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~ty~~ll~~~~~----~g~~~~ 242 (425)
+..+.+....+. ...+..|-..|.. .+++++|+++|++..+.|-. .+...+..|-..|.. .++.++
T Consensus 73 ~~~~~~A~~~g~-----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 73 RQLAEKAVEAGS-----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHTTC-----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHCCC-----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 888888765543 2488888888887 88999999999999887532 126788888888888 889999
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 042756 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDH-N-----ELSRMVLWLQKMKDSGI 290 (425)
Q Consensus 243 a~~~~~~m~~~g~~~~~~~yn~li~~~~~~-g-----~~~~A~~l~~~M~~~g~ 290 (425)
|.+.|+...+. ..+...+..|-..|... | +.++|..+|++..+.|.
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999886 23555777787788654 3 89999999999988874
No 97
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.30 E-value=3.7e-05 Score=64.85 Aligned_cols=170 Identities=11% Similarity=-0.033 Sum_probs=108.3
Q ss_pred HHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccC
Q 042756 31 LTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWN 110 (425)
Q Consensus 31 l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~ 110 (425)
+..|++++|.+.++.+.........+++.+-..+...|+++.|...+.+. +++++.... ....
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a--------------l~~~~~~~~---~~~~ 65 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQAL--------------QQQAQKSGD---HTAE 65 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHTTCC---HHHH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH--------------HHHHHHcCC---cHHH
Confidence 45788899999655554333346788889999999999988888777764 333333221 2235
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHh---cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSK---LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~---~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
..++..+-..+...|++++|.+.+++..+. .+.........+..+-..+...|+++.+.+.++...+..........
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 145 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA 145 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH
Confidence 567888889999999999999999987653 22112133445677777888888865555554444443332222212
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
-..++..+-..+...|++++|.+.|++..+
T Consensus 146 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 146 IACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 233566777777778888888777776654
No 98
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.28 E-value=2.2e-05 Score=65.18 Aligned_cols=159 Identities=9% Similarity=0.001 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
......+.+.|++++|...|++..+. .|+....+..+-..+.+.|+ .+++...+.+..... |+...+..
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~la~~~~~~g~---~~~A~~~~~~a~~~~----p~~~~~~~ 78 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDE----LQSRGDVKLAKADCLLETKQ---FELAQELLATIPLEY----QDNSYKSL 78 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHH----HHTSHHHHHHHHHHHHHTTC---HHHHHHHHTTCCGGG----CCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----CCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHhhhcc----CChHHHHH
Confidence 34566788899999999999987654 33334467888889999999 556666665554332 22222222
Q ss_pred HHHH-HHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHh
Q 042756 195 MISG-LCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGD 271 (425)
Q Consensus 195 li~~-~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~ 271 (425)
+... +...+...+|...|++..+. .| +...+..+-.++...|++++|...|+...+..-.+ +...+..+...|..
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHH
Confidence 2111 22333445678888888774 45 47888999999999999999999999988764322 36689999999999
Q ss_pred cCCHHHHHHHHHHHH
Q 042756 272 HNELSRMVLWLQKMK 286 (425)
Q Consensus 272 ~g~~~~A~~l~~~M~ 286 (425)
.|+.++|...|++..
T Consensus 157 ~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 157 LGQGNAIASKYRRQL 171 (176)
T ss_dssp HCSSCHHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHH
Confidence 999999999998765
No 99
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.28 E-value=3.6e-05 Score=58.87 Aligned_cols=98 Identities=9% Similarity=0.036 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
...|..+...+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+.+.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3588889999999999999999999998753 3357788999999999999999999999988754 2367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042756 269 YGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~ 288 (425)
|...|++++|...|+++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999998765
No 100
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.27 E-value=7.9e-05 Score=67.40 Aligned_cols=172 Identities=12% Similarity=-0.035 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCch--hHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC-CccC
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRER--ELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS-VYVK 188 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~--~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~ 188 (425)
..+...+..+...|++++|.+.+++..+....... ....++..+...+...|+ .+++...+.+....... ..+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD---YEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC---HHHHHHHHHHHHTTCCCSSCTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHHhcCCchH
Confidence 34555788889999999999999887764332111 111233445556677788 45555655555432211 1111
Q ss_pred --hhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCC
Q 042756 189 --RQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEP--SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTR 256 (425)
Q Consensus 189 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~ 256 (425)
..+|+.+-..|...|++++|...|++.... +-.+ ...+|..+-..|.+.|++++|.+.++...+. +..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 358999999999999999999999998732 1112 1258899999999999999999999987643 111
Q ss_pred c-CHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 042756 257 V-DTVCSNMVLSSYGDHNELSRM-VLWLQKMK 286 (425)
Q Consensus 257 ~-~~~~yn~li~~~~~~g~~~~A-~~l~~~M~ 286 (425)
. -..+|..+-..|.+.|+.++| ...|++..
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1 167899999999999999999 77788764
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.24 E-value=6.9e-05 Score=66.42 Aligned_cols=173 Identities=6% Similarity=-0.070 Sum_probs=115.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCc-cCHHHHHHHHHHHHhcCChhHHH
Q 042756 53 DSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQ-WNPKLVAEIIAFLDKQGQREEAE 131 (425)
Q Consensus 53 d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~ 131 (425)
+...+-.+-..+.+.|+++.|...|.+++ ....-. .....+..+-.+|.+.|++++|.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l---------------------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~ 72 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVF---------------------TYGRTHEWAADAQFYLARAYYQNKEYLLAA 72 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHG---------------------GGCSCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHH---------------------HhCCCCcchHHHHHHHHHHHHHhCcHHHHH
Confidence 45555556666666666555555555544 332111 12567777889999999999999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHh--------cCCcccHHHHHHHHHHHhhcCCCCccChhHH-----------
Q 042756 132 TLILETLSKLGSRERELVLFYCNLIDSFCK--------HDSKRGFDDTYARLNQLVNSSSSVYVKRQAL----------- 192 (425)
Q Consensus 132 ~l~~~m~~~~~~~~~~~~~~y~~li~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~----------- 192 (425)
+.|++..+.... .+.....+..+-.++.+ .|+++.+.+.++.+.+..+... ..+
T Consensus 73 ~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~------~~~~a~~~~~~~~~ 145 (261)
T 3qky_A 73 SEYERFIQIYQI-DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE------LVDDATQKIRELRA 145 (261)
T ss_dssp HHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT------THHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch------hHHHHHHHHHHHHH
Confidence 999999875322 22223355667777777 7885544444444444322221 133
Q ss_pred ------HHHHHHHHhcCChhHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHC
Q 042756 193 ------KSMISGLCEMGQPHEAENLIEEMRVKGLE-P-SGFEYKCIIYGYGRL----------GLLEDMERIVNQMESD 253 (425)
Q Consensus 193 ------~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~ty~~ll~~~~~~----------g~~~~a~~~~~~m~~~ 253 (425)
..+-..|.+.|++++|...|++.....-. | ....+..+..+|.+. |++++|...|+...+.
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 45678899999999999999999875311 1 245677777888766 8999999999998875
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.24 E-value=1.3e-05 Score=80.08 Aligned_cols=153 Identities=8% Similarity=-0.075 Sum_probs=85.6
Q ss_pred chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 89 ~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
+.+++|.+.|++..+.+ +-+...+..+-..+.+.|++++|.+.|++..+. .+.....|..+-..|.+.|+++++
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL----HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 35667777777766554 224666777777777777777777777776653 122233566677777777774444
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC---CCHHHHHH
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL---GLLEDMER 245 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~---g~~~~a~~ 245 (425)
.+.++...+..+ -+...|..+-.+|.+.|++++|.+.|++..+.. .-+...+..+..++... |+.++|.+
T Consensus 77 ~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 77 AVLLQQASDAAP------EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 333333333211 123477777777777777777777777776642 22456677777777777 77777777
Q ss_pred HHHHHHHCC
Q 042756 246 IVNQMESDG 254 (425)
Q Consensus 246 ~~~~m~~~g 254 (425)
.++...+.+
T Consensus 150 ~~~~al~~~ 158 (568)
T 2vsy_A 150 QVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHhcC
Confidence 777776653
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.19 E-value=1.9e-05 Score=80.73 Aligned_cols=169 Identities=6% Similarity=-0.080 Sum_probs=124.8
Q ss_pred hhhhHHHHHHHhh--------hcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh
Q 042756 90 LSSLAFPLYMRIT--------EESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK 161 (425)
Q Consensus 90 ~~~~a~~lf~~m~--------~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~ 161 (425)
..++|++.|++.. +.+ +-+...+..+-..+.+.|++++|.+.|++..+... +....|..+-.+|.+
T Consensus 406 ~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p----~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 406 QPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG----WRWRLVWYRAVAELL 479 (681)
T ss_dssp CHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc----chHHHHHHHHHHHHH
Confidence 5677888777765 322 23556788888899999999999999999887522 223467788888999
Q ss_pred cCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHH
Q 042756 162 HDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLE 241 (425)
Q Consensus 162 ~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~ 241 (425)
.|+++++.+.++...+..+.. ...|..+-.+|.+.|++++ .+.|++..+.+ .-+...|..+-.++.+.|+++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGE------LAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHH
Confidence 999665555555555543222 3489999999999999999 99999998753 225678999999999999999
Q ss_pred HHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCC
Q 042756 242 DMERIVNQMESDGTRVD-TVCSNMVLSSYGDHNE 274 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~-~~~yn~li~~~~~~g~ 274 (425)
+|.+.|+...+. .|+ ...|..+..++...|+
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999987765 344 6778888888877665
No 104
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.19 E-value=0.00033 Score=70.91 Aligned_cols=236 Identities=9% Similarity=-0.005 Sum_probs=153.6
Q ss_pred HHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHH-HHHHHhhhcCCCccCHHHHHHH
Q 042756 39 GQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAF-PLYMRITEESWFQWNPKLVAEI 117 (425)
Q Consensus 39 a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~-~lf~~m~~~~~~~~~~~~~~~l 117 (425)
...+|++.....+.+...|-....-+...|+. +.|. ++|++.... ++.+...+-..
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~---------------------~~a~r~il~rAi~~--~P~s~~Lwl~~ 384 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTD---------------------STVITKYLKLGQQC--IPNSAVLAFSL 384 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCC---------------------TTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcH---------------------HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34455555554444555665555555555543 3453 555554432 33466667677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcC---------CCc---------hhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 042756 118 IAFLDKQGQREEAETLILETLSKLG---------SRE---------RELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179 (425)
Q Consensus 118 l~~~~~~g~~~~A~~l~~~m~~~~~---------~~~---------~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~ 179 (425)
+...-+.|++++|.++|+...+... .|. .....+|...++...+.|..+.+..++....+..
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 8888889999999999999876420 111 0123367777888778888555555554443331
Q ss_pred hcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC--c
Q 042756 180 NSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR--V 257 (425)
Q Consensus 180 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~--~ 257 (425)
+...+......+.+...+ .++.+.|..+|+...+. ..-+...+...++.....|+.+.|..+|+......-. -
T Consensus 465 ---~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 465 ---KLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp ---GGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred ---CCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 112222223333333221 35699999999999886 3335566778888888899999999999998876432 2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
....|...+.--.+.|+.+.+.++.++|.+. .|+......+++-|
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence 4678999999999999999999999999876 46665555555443
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.14 E-value=0.00019 Score=64.84 Aligned_cols=165 Identities=8% Similarity=-0.026 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+...+..+-..+.+.|++++|.+.|++..+.. |+....+..+...+.+.|+ .+++...+.+.... .|+.
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----P~~~~a~~~la~~~~~~g~---~~~A~~~l~~~~~~----~p~~ 184 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS----NQNGEIGLLLAETLIALNR---SEDAEAVLXTIPLQ----DQDT 184 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----TSCHHHHHHHHHHHHHTTC---HHHHHHHHTTSCGG----GCSH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHCCC---HHHHHHHHHhCchh----hcch
Confidence 44556667788889999999999999987752 2223367788899999999 56666666665433 2443
Q ss_pred hHHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC-cCHHhHHHHHH
Q 042756 190 QALK-SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR-VDTVCSNMVLS 267 (425)
Q Consensus 190 ~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~yn~li~ 267 (425)
.... .....+.+.++.++|...|++..... +.+...+..+-.++...|++++|...|....+..-. .+...+..+..
T Consensus 185 ~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 185 RYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 3222 22333667788999999999988752 335778999999999999999999999999876322 23778999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~ 286 (425)
.|...|+.++|...|++-.
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 9999999999999888754
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.13 E-value=0.00028 Score=63.75 Aligned_cols=163 Identities=7% Similarity=-0.080 Sum_probs=111.0
Q ss_pred hhhhHHHHHHHhhhcCCCccCHH----HHHHHHHHHHhcCChhHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHhcC
Q 042756 90 LSSLAFPLYMRITEESWFQWNPK----LVAEIIAFLDKQGQREEAETLILETLSKLGS--RERELVLFYCNLIDSFCKHD 163 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~----~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~--~~~~~~~~y~~li~~~~~~g 163 (425)
.+++|.++++.........++.. .|..+...+...|++++|.+.|++..+.... .......+|+.+-..|...|
T Consensus 90 ~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g 169 (293)
T 3u3w_A 90 RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC
Confidence 45666666666554332333322 3344666667778999999999998873221 11122336889999999999
Q ss_pred CcccHHHHHHHHHHHhhcCCCCccC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHcC
Q 042756 164 SKRGFDDTYARLNQLVNSSSSVYVK-RQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEPS-GFEYKCIIYGYGRL 237 (425)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~ty~~ll~~~~~~ 237 (425)
+++.+.+.++...+.....+...+. ..+|+.+...|.+.|++++|...+++..+. +..+. ..+|..+-.+|.+.
T Consensus 170 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 249 (293)
T 3u3w_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL 249 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 9766665555555443332112222 348999999999999999999999988753 22333 66899999999999
Q ss_pred C-CHHHHHHHHHHHHH
Q 042756 238 G-LLEDMERIVNQMES 252 (425)
Q Consensus 238 g-~~~~a~~~~~~m~~ 252 (425)
| +.++|.+.|+....
T Consensus 250 g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 250 EYEEAEIEDAYKKASF 265 (293)
T ss_dssp TCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9 46999998887654
No 107
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.11 E-value=0.00037 Score=59.22 Aligned_cols=131 Identities=7% Similarity=-0.085 Sum_probs=105.8
Q ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 042756 152 YCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCII 231 (425)
Q Consensus 152 y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll 231 (425)
+..+-..+...|+ .+++...+.+. +.|+...|..+..+|.+.|++++|...|++..... +.+...|..+-
T Consensus 9 ~~~~g~~~~~~~~---~~~A~~~~~~a------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 9 LWNEGVLAADKKD---WKGALDAFSAV------QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHTS------SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhCC---HHHHHHHHHHH------cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 4556677788898 56666666655 23566799999999999999999999999998863 33577899999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCC--------------Cc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGT--------------RV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~--------------~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
.+|.+.|++++|.+.|+...+..- .| +...|..+...|...|++++|...|++..+. .|+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~ 154 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEP 154 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSG
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc--Cccc
Confidence 999999999999999999887421 11 2378899999999999999999999998865 4543
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.09 E-value=3.9e-05 Score=78.30 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=130.0
Q ss_pred HHHHhhHHHHHHHHHHhH--------HhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHh
Q 042756 30 CLTARLTKQGQRFLSSLA--------LAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRI 101 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~--------~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m 101 (425)
.+..++.++|.+.|+... +..+.+...+..+-..+...|+++.|...+.+.+
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al-------------------- 460 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA-------------------- 460 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------
T ss_pred cccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh--------------------
Confidence 356678899999999987 3344567888888899999987777666666654
Q ss_pred hhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc
Q 042756 102 TEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181 (425)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (425)
+.+ +-+...|..+-..+.+.|++++|.+.|++..+... +....|..+-.+|.+.|++++ .+.++...+..+.
T Consensus 461 -~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P----~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~ 532 (681)
T 2pzi_A 461 -ERV--GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP----GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG 532 (681)
T ss_dssp -HHH--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST----TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT
T ss_pred -ccC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc
Confidence 222 12677888899999999999999999999887522 223367889999999999888 7777776665322
Q ss_pred CCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCC
Q 042756 182 SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGL 239 (425)
Q Consensus 182 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~ 239 (425)
+...|..+-.++.+.|++++|.+.|++..+ +.|+ ...+..+..++...++
T Consensus 533 ------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 533 ------VISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred ------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 234899999999999999999999998876 4565 4577777777766554
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.06 E-value=6.6e-05 Score=74.85 Aligned_cols=153 Identities=7% Similarity=-0.071 Sum_probs=95.6
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcC
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 203 (425)
.|++++|.+.|++..+. .+.....|..+-..|.+.|++ +++...+.+.....+ -+...|..+-.+|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQDFVAWLMLADAELGMGDT---TAGEMAVQRGLALHP---GHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHTCH---HHHHHHHHHHHTTST---TCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC
Confidence 36778888888877653 222233567777888888884 444444444443331 13457888888888888
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc---CCHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH---NELSRMVL 280 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~---g~~~~A~~ 280 (425)
++++|.+.|++..+.. +-+...+..+-.+|.+.|++++|.+.|+...+..- -+...+..+...+... |+.++|.+
T Consensus 72 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHH
Confidence 8888888888887752 22466888888888888888888888888776532 2567788888888888 88888888
Q ss_pred HHHHHHhC
Q 042756 281 WLQKMKDS 288 (425)
Q Consensus 281 l~~~M~~~ 288 (425)
.|++..+.
T Consensus 150 ~~~~al~~ 157 (568)
T 2vsy_A 150 QVRAAVAQ 157 (568)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 88887654
No 110
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.05 E-value=0.00019 Score=55.27 Aligned_cols=117 Identities=9% Similarity=-0.018 Sum_probs=89.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
...|..+...+...|++++|...|++..... +.+...+..+...+...|++++|.+.++...+.. +.+...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4578888888899999999999999988752 2357788888889999999999999999887753 2357788888889
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~ 308 (425)
|...|++++|...|++..+.. ..+...+..+..++...|
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 999999999999999887652 224455555555554433
No 111
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.03 E-value=0.00017 Score=55.90 Aligned_cols=114 Identities=10% Similarity=-0.083 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
.+...|..+...+.+.|++++|...|++..... ..+...+..+...+...|++++|.+.++...+.. ..+...|..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345688999999999999999999999998752 2367889999999999999999999999988753 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 042756 267 SSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNSVLNSC 304 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~ 304 (425)
..|...|++++|.+.|++..+. .|+ ...+..+-..+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~ 128 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCM 128 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 9999999999999999998764 343 23444444443
No 112
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.03 E-value=0.00017 Score=58.38 Aligned_cols=102 Identities=8% Similarity=-0.094 Sum_probs=88.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
...|..+-..+.+.|++++|...|++.... .| +...|..+-.+|.+.|++++|...|+...+..- -+...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHH
Confidence 357888889999999999999999999985 44 578999999999999999999999999987642 25788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
+|...|++++|...|++..+. .||..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 999999999999999999875 46654
No 113
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.02 E-value=0.0038 Score=60.19 Aligned_cols=232 Identities=15% Similarity=0.129 Sum_probs=128.8
Q ss_pred HhhH---HHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHhhhCCCCCCCchh-------------
Q 042756 33 ARLT---KQGQRFLSSLALAVTRDSKAASRLISKFVASS-----PQFIALNALSHLLSPDTTHPRLS------------- 91 (425)
Q Consensus 33 ~~~~---~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~-----~~~~a~~~~~~~l~~~~~~~~~~------------- 91 (425)
.|.. ++|.+.|+...+. +...+..|-..+...+ +.++|...+.+....+... ...
T Consensus 48 ~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~-A~~~Lg~~y~~~~~~~ 123 (452)
T 3e4b_A 48 TRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGN-TLIPLAMLYLQYPHSF 123 (452)
T ss_dssp --------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS-CHHHHHHHHHHCGGGC
T ss_pred cCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH-HHHHHHHHHHhCCCCC
Confidence 4555 6777777766543 5555555655454444 5667888887776654321 111
Q ss_pred --hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 92 --SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 92 --~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
..+.+.+......+ ++.....+-..|...+.++++.+-.....+......+. .+..|-..|.+.|......
T Consensus 124 ~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~ 196 (452)
T 3e4b_A 124 PNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQA 196 (452)
T ss_dssp TTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHH
Confidence 23444444444443 23344456666666675555555444443332222333 4566777777778555577
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HcCCCHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEM----GQPHEAENLIEEMRVKGLEPSGFEYKCIIYG-Y--GRLGLLED 242 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~--~~~g~~~~ 242 (425)
+++..+.+....++ ++...+..+-..|... +++++|++.|++.. .| +...+..+-.. + ...++.++
T Consensus 197 ~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~ 269 (452)
T 3e4b_A 197 ELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQ 269 (452)
T ss_dssp HHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHH
T ss_pred HHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHH
Confidence 78888877766653 2333446666666554 68888888888877 33 34455555444 3 45788888
Q ss_pred HHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-----CHHHHHHHHHHHH
Q 042756 243 MERIVNQMESDGTRVDTVCSNMVLSSYGDHN-----ELSRMVLWLQKMK 286 (425)
Q Consensus 243 a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g-----~~~~A~~l~~~M~ 286 (425)
|.+.|+...+.| +...+..|-..|. .| ++++|.++|++..
T Consensus 270 A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 270 MMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 888888888776 5667777777776 44 8888888888876
No 114
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.02 E-value=0.00015 Score=65.56 Aligned_cols=150 Identities=12% Similarity=-0.034 Sum_probs=101.5
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
..++|...|++....+. -+...+..+...+.+.|++++|.+.|++...... .. ..........+.+.++.+.+.
T Consensus 132 ~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~--~~~~~~~~~~l~~~~~~~~a~ 205 (287)
T 3qou_A 132 NYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DT--RYQGLVAQIELLXQAADTPEI 205 (287)
T ss_dssp CHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SH--HHHHHHHHHHHHHHHTSCHHH
T ss_pred CHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--ch--HHHHHHHHHHHHhhcccCccH
Confidence 34445555555444331 2667788899999999999999999998765422 22 112222333355556644444
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE-PSGFEYKCIIYGYGRLGLLEDMERIVN 248 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~g~~~~a~~~~~ 248 (425)
+.++...+..+ .+...+..+-..+...|++++|.+.|.+..+..-. .+...+..+...+...|+.++|...++
T Consensus 206 ~~l~~al~~~P------~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 206 QQLQQQVAENP------EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHHHCT------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHhcCC------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44433333221 23458999999999999999999999999986321 125689999999999999999988887
Q ss_pred HHH
Q 042756 249 QME 251 (425)
Q Consensus 249 ~m~ 251 (425)
+-.
T Consensus 280 ~al 282 (287)
T 3qou_A 280 RQL 282 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.01 E-value=0.00077 Score=58.18 Aligned_cols=156 Identities=11% Similarity=0.029 Sum_probs=102.0
Q ss_pred hhhhHHHHHHHhhhcCCCcc-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh-------
Q 042756 90 LSSLAFPLYMRITEESWFQW-NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCK------- 161 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~-~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~------- 161 (425)
.+++|...|+.+.....-.+ ....+..+..+|.+.|++++|.+.|++..+...... .....+-.+-.++.+
T Consensus 19 ~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-~~~~a~~~~g~~~~~~~~~~~~ 97 (225)
T 2yhc_A 19 NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-NIDYVMYMRGLTNMALDDSALQ 97 (225)
T ss_dssp CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-cHHHHHHHHHHHHHhhhhhhhh
Confidence 44555555555444321222 245677788999999999999999999887533222 111122233333332
Q ss_pred -----------cCCcccHHHHHHHHHHHhhcCCCCccChhHH-----------------HHHHHHHHhcCChhHHHHHHH
Q 042756 162 -----------HDSKRGFDDTYARLNQLVNSSSSVYVKRQAL-----------------KSMISGLCEMGQPHEAENLIE 213 (425)
Q Consensus 162 -----------~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~ 213 (425)
.|+ .+++...+.+.....+.. + ..+ -.+...|.+.|++++|...|+
T Consensus 98 ~~~~~~~~~~~~~~---~~~A~~~~~~~l~~~P~~-~--~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 171 (225)
T 2yhc_A 98 GFFGVDRSDRDPQQ---ARAAFSDFSKLVRGYPNS-Q--YTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVE 171 (225)
T ss_dssp ----------CCHH---HHHHHHHHHHHHTTCTTC-T--THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhccchhhcCcHH---HHHHHHHHHHHHHHCcCC-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 234 566666666665433211 1 122 234567888999999999999
Q ss_pred HHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 214 EMRVKGLEPS----GFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 214 ~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
++.+. -|+ ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 172 ~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 172 GMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 99885 343 2568889999999999999999999988864
No 116
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.01 E-value=0.00015 Score=55.93 Aligned_cols=113 Identities=9% Similarity=-0.022 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC--CcC----HHhHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT--RVD----TVCSN 263 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~--~~~----~~~yn 263 (425)
..|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++...+..- .++ ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 478888889999999999999999998763 34677888999999999999999999998876421 112 77889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~ 305 (425)
.+...|...|++++|.+.|++..+. .|+......+-....
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 9999999999999999999998875 466655555544433
No 117
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=0.00054 Score=65.29 Aligned_cols=213 Identities=11% Similarity=0.005 Sum_probs=136.2
Q ss_pred HHHHhcCChHHHHHHHHhhhCCCCCCCch------hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHH
Q 042756 62 SKFVASSPQFIALNALSHLLSPDTTHPRL------SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL 135 (425)
Q Consensus 62 ~~~~~~~~~~~a~~~~~~~l~~~~~~~~~------~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~ 135 (425)
..+.+.|++.+|.+.+.+++......... ...... .....+..+...|.+.|++++|.+++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~~~~al~~l~~~y~~~~~~~~a~~~~~ 79 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRN------------EQETSILELGQLYVTMGAKDKLREFIP 79 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhh------------hHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44566677777877777776544322210 000000 011246678999999999999999999
Q ss_pred HHHHhcCCC-chhHHHHHHHHHH-HHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHH
Q 042756 136 ETLSKLGSR-ERELVLFYCNLID-SFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIE 213 (425)
Q Consensus 136 ~m~~~~~~~-~~~~~~~y~~li~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 213 (425)
...+..... ...........+. .+...|+.+.+.+.+...............-..++..+...|...|++++|..+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 876532222 2111111222333 33345665444444444444333322222234588899999999999999999999
Q ss_pred HHHHc--C--CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----CCCcC--HHhHHHHHHHHHhcCCHHHHHHHH
Q 042756 214 EMRVK--G--LEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESD----GTRVD--TVCSNMVLSSYGDHNELSRMVLWL 282 (425)
Q Consensus 214 ~m~~~--g--~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~yn~li~~~~~~g~~~~A~~l~ 282 (425)
+.... + -.| ...+|..++..|...|+++.|..+++..... +..+. ...|..+...+...|++++|...|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 98754 1 122 2458899999999999999999999876532 22211 466777788888999999999988
Q ss_pred HHHH
Q 042756 283 QKMK 286 (425)
Q Consensus 283 ~~M~ 286 (425)
.+..
T Consensus 240 ~~a~ 243 (434)
T 4b4t_Q 240 FESF 243 (434)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 118
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.96 E-value=0.00018 Score=57.59 Aligned_cols=106 Identities=11% Similarity=-0.017 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLG--SRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~--~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
..++..+-..+...|++++|.+.+++..+... ........++..+-..+...|+++.+.+.++...+...........
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 44677788888889999999999888765211 1111112244555555666666444443333333332222111111
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMR 216 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~ 216 (425)
...+..+-..+...|++++|.+.|++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344444555555555555555554443
No 119
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.96 E-value=3.4e-05 Score=62.30 Aligned_cols=52 Identities=8% Similarity=-0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDME 244 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~ 244 (425)
+|..+-.+|.+.|++++|+..|++..+. .| +..+|..+-..|.+.|+.++|.
T Consensus 67 a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 67 AHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHH
Confidence 5555555555555555555555555442 23 2344555555555555554433
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.96 E-value=0.0003 Score=63.55 Aligned_cols=138 Identities=9% Similarity=-0.043 Sum_probs=97.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCC--CchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC-CccChh
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSKLGS--RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS-VYVKRQ 190 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~--~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~p~~~ 190 (425)
+..+...+...|++++|.+.|++..+.... .......+|+.+-..|...|+++.+.+.++...+.....+. ......
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~ 197 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence 334556677889999999999987753211 12222447888999999999966655555555433232211 111235
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHHcCCCHHHH-HHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKG----LEPS-GFEYKCIIYGYGRLGLLEDM-ERIVNQME 251 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~-~~ty~~ll~~~~~~g~~~~a-~~~~~~m~ 251 (425)
+|+.+...|.+.|++++|+..|++..+.. .... ..+|..+-.+|.+.|+.++| ...++...
T Consensus 198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 89999999999999999999999987532 1111 66889999999999999999 77777654
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.96 E-value=0.00022 Score=60.92 Aligned_cols=139 Identities=10% Similarity=-0.062 Sum_probs=91.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
..+-..|.+.|++++|.+.|++..+.. |.....+..+-..|...|+++++.+.++...+.-+. +..+|..
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~------~~~a~~~ 127 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD------NLAANIF 127 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHH
Confidence 348888999999999999999988752 222446788999999999965555555555444222 2348888
Q ss_pred HHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 195 MISGLCEMGQ--PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 195 li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
+-.+|...|+ .+.+...|+.... ..|....+-..-.++...|++++|...|+...+. .|+......+.+
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 8888866653 4455666655432 2233333444455667789999999999998875 577655544433
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.95 E-value=0.00036 Score=54.35 Aligned_cols=102 Identities=10% Similarity=-0.123 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|...-..|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+..- .+...|..+-.+|
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHH
Confidence 477788888999999999999999988752 33578899999999999999999999998887542 3578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
...|++++|.+.|++..+. .|+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l--~P~~~ 115 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV--DPSNE 115 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHCCCHHHHHHHHHHHHHH--CcCCH
Confidence 9999999999999998764 56543
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.95 E-value=0.00014 Score=59.99 Aligned_cols=113 Identities=6% Similarity=-0.064 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHcCCCH--HHHHHHHHHHHHCCCCcCHHhHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYG-YGRLGLL--EDMERIVNQMESDGTRVDTVCSNMVL 266 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~-~~~~g~~--~~a~~~~~~m~~~g~~~~~~~yn~li 266 (425)
..|..+...|...|++++|...|++..... +.+...+..+..+ +...|++ ++|...|+...+..- .+...|..+.
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la 122 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-NEITALMLLA 122 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 478888888888888888888888887642 2255677777777 7788887 888888888876532 2567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 042756 267 SSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 267 ~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~ 306 (425)
..|...|++++|...|++..+. .|+......++....+
T Consensus 123 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 123 SDAFMQANYAQAIELWQKVMDL--NSPRINRTQLVESINM 160 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT--CCTTSCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhh--CCCCccHHHHHHHHHH
Confidence 8888999999999999988764 3443333444444433
No 124
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.93 E-value=0.00019 Score=64.88 Aligned_cols=135 Identities=10% Similarity=-0.026 Sum_probs=97.7
Q ss_pred HHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 042756 172 YARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE-PSGFEYKCIIYGYGRLGLLEDMERIVNQM 250 (425)
Q Consensus 172 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~ty~~ll~~~~~~g~~~~a~~~~~~m 250 (425)
...+.+....+ .++..++..+..++...|++++|++++.+-...|-. -+...+..++..+.+.|+.+.|.+.++.|
T Consensus 86 ~~~l~~l~~~~---~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 86 IEELENLLKDK---QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CHHHHHTTTTS---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC---CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444332 234446668889999999999999999998665432 25668889999999999999999999999
Q ss_pred HHCCCCc-----CHHhHHHHHHHHH--h--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 251 ESDGTRV-----DTVCSNMVLSSYG--D--HNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 251 ~~~g~~~-----~~~~yn~li~~~~--~--~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.+. .| +..+...|..+++ . .++..+|..+|+++.+. .|+..+-..+++++.+.|+++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eA 230 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEA 230 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHH
Confidence 875 45 3566666666633 2 34899999999998765 46655556666666666766554
No 125
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=97.93 E-value=0.00074 Score=57.31 Aligned_cols=106 Identities=8% Similarity=0.006 Sum_probs=68.6
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC-----
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS----- 183 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~----- 183 (425)
|++..+..+...|.+.|++++|.+.|++..+.. +.....|..+-..|.+.|+++.+.+.++...+..+...
T Consensus 35 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 35 PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 466777888888888888888888888877652 12233567777888888885544444444444322211
Q ss_pred ----CCcc-ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 184 ----SVYV-KRQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 184 ----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
...| ....|..+..+|.+.|++++|.+.|++..+.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 0111 1247777777888888888888888877764
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.91 E-value=0.00055 Score=51.99 Aligned_cols=63 Identities=10% Similarity=0.017 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..|..+...+.+.|++++|..+|+++.... +.+..++..+...|...|++++|.+.|+...+.
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356666666666666667766666666542 224556666666677777777777777666554
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.90 E-value=0.00083 Score=54.20 Aligned_cols=121 Identities=7% Similarity=-0.078 Sum_probs=89.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|..+...+...|++++|...|++..... +.+..++..+..++...|++++|.+.++...+.. +.+...|..+...|
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 377788888888999999999999887752 2357788888888999999999999999887753 23577888888899
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--HHHHHHHHHHHHh
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSVRTYNSV--LNSCSTIMSMLQD 313 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l--l~~~~~~~~~~~~ 313 (425)
...|++++|...|++..+.. ..+...+..+ ...+...|+++++
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A 136 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERA 136 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987642 1233344333 3335556666555
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.89 E-value=0.00023 Score=57.62 Aligned_cols=93 Identities=8% Similarity=-0.177 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHH--HHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNM--VLSS 268 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~--li~~ 268 (425)
.|..+..++...|++++|.+.|++..... +.+...|..+..++.+.|++++|.+.|+...+..- .+...+.. +...
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 44555555555555555555555555431 12344555555555555666666655555554321 12223322 2222
Q ss_pred HHhcCCHHHHHHHHHHH
Q 042756 269 YGDHNELSRMVLWLQKM 285 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M 285 (425)
+...|++++|.+.+.+.
T Consensus 127 ~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccch
Confidence 45556666666665544
No 129
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.86 E-value=0.00074 Score=50.71 Aligned_cols=98 Identities=9% Similarity=-0.111 Sum_probs=83.9
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
...|..+...+...|++++|.+.|++..... +.+...+..+...+.+.|++++|...++...+..- .+...|..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence 3478888899999999999999999998753 23677888899999999999999999999887642 367889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042756 269 YGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~ 288 (425)
|...|++++|.+.|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999998864
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.85 E-value=0.00063 Score=52.51 Aligned_cols=97 Identities=8% Similarity=-0.082 Sum_probs=83.3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+..- .+...|..+-.+|
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 477888888999999999999999998753 33578999999999999999999999999887642 3578899999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 042756 270 GDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~ 288 (425)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 131
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.85 E-value=0.00092 Score=54.35 Aligned_cols=119 Identities=10% Similarity=-0.101 Sum_probs=93.5
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
+...|..+-..+.+.|++++|++.|++..+.. .-+...|..+-.+|.+.|++++|...|+...+..- -+...|..+-.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 45688889999999999999999999998853 22678999999999999999999999999887642 35889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll~~~~~~~ 308 (425)
.|...|++++|...|++..+.. -.++......+..+..+.+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~ 129 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIE 129 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999987532 2233333444444433333
No 132
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.84 E-value=0.0009 Score=53.36 Aligned_cols=146 Identities=12% Similarity=-0.062 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHH
Q 042756 55 KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLI 134 (425)
Q Consensus 55 ~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~ 134 (425)
.++..+-..+...|+++.|...+.+.+ +++..... ......++..+-..+...|++++|.+.+
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al--------------~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 72 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRL--------------LIAKEFGD---KAAERIAYSNLGNAYIFLGEFETASEYY 72 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHhCC---chHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777777888888888877776643 23332211 1122357888899999999999999999
Q ss_pred HHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH
Q 042756 135 LETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI 212 (425)
Q Consensus 135 ~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 212 (425)
++..+. .....+.....+..+-..+...|+++.+.+.++...+..............+..+-..|...|++++|.+.+
T Consensus 73 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 152 (164)
T 3ro3_A 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 997652 112222334467778888999999766666555555543332222122346777778888888888888888
Q ss_pred HHHHH
Q 042756 213 EEMRV 217 (425)
Q Consensus 213 ~~m~~ 217 (425)
++..+
T Consensus 153 ~~a~~ 157 (164)
T 3ro3_A 153 EKHLE 157 (164)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 133
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=97.83 E-value=0.00065 Score=56.07 Aligned_cols=130 Identities=13% Similarity=0.077 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HHhcCCcccHHHHHHHHHHHhhcCCCCcc-
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDS-FCKHDSKRGFDDTYARLNQLVNSSSSVYV- 187 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~p- 187 (425)
+...+..+-..+.+.|++++|...|++..+... .+. .+..+... +.+.+.... +...+.+..... |
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~---~~~~~~~~~~~~~~~~~~---a~~~~~~al~~~----P~ 106 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNS---YKSLIAKLELHQQAAESP---ELKRLEQELAAN----PD 106 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHH---HHHHHHHHHHHHHHTSCH---HHHHHHHHHHHS----TT
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChH---HHHHHHHHHHHhhcccch---HHHHHHHHHHhC----CC
Confidence 455566666667777777777777766544321 111 11111101 111111111 223333332211 2
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
+...+..+-.++...|++++|...|++..+..-.+ +...+..+...+...|+.++|...|+...
T Consensus 107 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 107 NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 23466777777777777777777777776643221 24566777777777777777777776544
No 134
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.79 E-value=0.0026 Score=49.51 Aligned_cols=98 Identities=11% Similarity=-0.045 Sum_probs=85.4
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLS 267 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~ 267 (425)
+...|..+-..+.+.|++++|...|++..... +.+...|..+-.++...|++++|...++...+..- .+...|..+-.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 45689999999999999999999999988753 23577899999999999999999999999887642 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 042756 268 SYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~~ 287 (425)
.|...|++++|...|++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999864
No 135
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.79 E-value=0.00038 Score=51.86 Aligned_cols=97 Identities=8% Similarity=-0.152 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc--CHHhHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV--DTVCSNMVLS 267 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~--~~~~yn~li~ 267 (425)
..|..+...+.+.|++++|...|++..+.. ..+...+..+-.++.+.|++++|.+.|+...+.. .. +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 478888899999999999999999998753 3357788899999999999999999999988763 22 5788999999
Q ss_pred HHHhc-CCHHHHHHHHHHHHhC
Q 042756 268 SYGDH-NELSRMVLWLQKMKDS 288 (425)
Q Consensus 268 ~~~~~-g~~~~A~~l~~~M~~~ 288 (425)
.|... |++++|.+.|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 99999 9999999999998765
No 136
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.77 E-value=0.00047 Score=55.34 Aligned_cols=98 Identities=9% Similarity=-0.051 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
...+..+-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|.+.|+...+..- -+...|..+-.+
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~ 98 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 3477778888999999999999999988752 23677888888999999999999999999887532 357788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042756 269 YGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~ 288 (425)
|...|++++|...|++..+.
T Consensus 99 ~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998753
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.77 E-value=0.0012 Score=50.62 Aligned_cols=119 Identities=6% Similarity=-0.103 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 042756 149 VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK 228 (425)
Q Consensus 149 ~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~ 228 (425)
...+..+...+...|+++ ++...+.+.....+ .+...|..+...+...|++++|.+.|++..... +.+...+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~---~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFE---AAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHTTCHH---HHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHccCHH---HHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 345666777777777744 44444444332211 134578888888888999999999998888752 23467888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 229 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
.+...+.+.|++++|.+.|+...+..- .+...+..+...+.+.|+.
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 888888999999999999988876532 2566777777777776653
No 138
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00066 Score=52.82 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCcC----HHhH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--TRVD----TVCS 262 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~----~~~y 262 (425)
..+..+-..+.+.|++++|++.|++..+. .| +...|..+-.+|.+.|++++|.+.|+...+.. ..++ ..+|
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 37788888999999999999999998874 44 47789999999999999999999999876531 1111 3467
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042756 263 NMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299 (425)
Q Consensus 263 n~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 299 (425)
..+-.+|...|++++|++.|++..+. .||..+...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 77888889999999999999997763 566655443
No 139
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=0.0011 Score=52.19 Aligned_cols=102 Identities=12% Similarity=-0.048 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS----GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN 263 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn 263 (425)
+...|..+...+.+.|++++|.+.|++..+. .|+ ...+..+-.+|...|++++|.+.++...+.. ..+...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4568889999999999999999999999874 566 6788889999999999999999999887753 23678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
.+...|...|++++|...|++..+. .|+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~ 132 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKN 132 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 9999999999999999999998764 4543
No 140
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.74 E-value=0.00098 Score=61.57 Aligned_cols=95 Identities=3% Similarity=-0.220 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|..+-.+|.+.|++++|+..|++..+.. +.+...|..+-.+|...|++++|...|+...+..- -+...+..+...+
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
Confidence 488999999999999999999999998853 23677899999999999999999999998887532 2577888899999
Q ss_pred HhcCCHHHH-HHHHHHHH
Q 042756 270 GDHNELSRM-VLWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A-~~l~~~M~ 286 (425)
.+.|+.++| ..+|++|.
T Consensus 275 ~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999888 44666664
No 141
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.73 E-value=0.00027 Score=56.90 Aligned_cols=137 Identities=11% Similarity=-0.051 Sum_probs=95.2
Q ss_pred chhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccH
Q 042756 89 RLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGF 168 (425)
Q Consensus 89 ~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~ 168 (425)
+.+++|+..|......+ +-++..+-.+-..|.+.|++++|.+.|++..+. .|.....|..+-..|.+.|+++.+
T Consensus 11 ~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV----QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp HHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCchHHH
Confidence 35677777777654432 113334556888899999999999999998875 223344788999999999996555
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHH-HHHHHcCCCC-CHHHHHHHHHHHHcCCC
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLI-EEMRVKGLEP-SGFEYKCIIYGYGRLGL 239 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p-~~~ty~~ll~~~~~~g~ 239 (425)
.+.++...+..+. +..+|..+-..|.+.|+.++|.+.| ++..+. .| +..+|...-..+.+.|+
T Consensus 85 ~~~~~~al~~~p~------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPT------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTT------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 5555554443221 2458999999999999998877764 776663 45 45677776666666664
No 142
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.72 E-value=0.00058 Score=52.73 Aligned_cols=80 Identities=5% Similarity=-0.176 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
.|..+...|...|++++|.+.|++..+.. ..+...+..+..++.+.|++++|.+.|+...+..- -+...+..+...+.
T Consensus 52 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 52 LYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHH
Confidence 55555555555666666666666555531 12345555566666666666666666665554321 12344444444444
Q ss_pred hc
Q 042756 271 DH 272 (425)
Q Consensus 271 ~~ 272 (425)
..
T Consensus 130 ~~ 131 (133)
T 2lni_A 130 AQ 131 (133)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 143
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.72 E-value=0.0095 Score=54.00 Aligned_cols=223 Identities=8% Similarity=-0.036 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~ 114 (425)
..++|+++++.+...-+-+..+||.--..+...+. ..+++++++++.+...+.- +..+|
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-------------------~~~~eeL~~~~~~L~~nPk--~y~aW 106 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPN-------------------RNLYDELDWCEEIALDNEK--NYQIW 106 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-------------------SCHHHHHHHHHHHHHHCTT--CCHHH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-------------------ccHHHHHHHHHHHHHHCcc--cHHHH
Confidence 44567777777776544456667766666665551 1455566666665554422 33334
Q ss_pred HHHHHHH----Hhc---CChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 115 AEIIAFL----DKQ---GQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 115 ~~ll~~~----~~~---g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
+.--..+ .+. +++++++++++.+.+. .|.+..+|+.---.+.+.|.++ ..+.++.+.++..... -
T Consensus 107 ~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~~~-~~~EL~~~~~~i~~d~---~ 178 (306)
T 3dra_A 107 NYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDLHN-DAKELSFVDKVIDTDL---K 178 (306)
T ss_dssp HHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHCT---T
T ss_pred HHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcccC-hHHHHHHHHHHHHhCC---C
Confidence 4333333 444 7899999999999875 2222345666666666777754 1244455555543331 2
Q ss_pred ChhHHHHHHHHHHhcCC------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHCC--CCcC
Q 042756 188 KRQALKSMISGLCEMGQ------PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL-EDMERIVNQMESDG--TRVD 258 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~-~~a~~~~~~m~~~g--~~~~ 258 (425)
|-..|+.--..+.+.+. ++++++.++++.... +-|...|+-.-..+.+.|+. +.+..+.+...+.+ -..+
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s 257 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS 257 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC
Confidence 44588877777777776 889999999988753 33778888888888888874 44555666655432 1347
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 259 TVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 259 ~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
...+..+.+.|.+.|+.++|.++++.+.+
T Consensus 258 ~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 258 SFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 88999999999999999999999999875
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.72 E-value=0.00014 Score=61.50 Aligned_cols=95 Identities=9% Similarity=-0.072 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|..+-.+|.+.|++++|+..|++..... +.+...+..+-.+|...|++++|.+.|+...+.. +-+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 466666677777777777777777766642 2245566666666777777777777777665542 12455566666666
Q ss_pred HhcCCHHHHH-HHHHHHH
Q 042756 270 GDHNELSRMV-LWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~-~l~~~M~ 286 (425)
...|+.+++. ..|..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 6555555554 3444443
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.72 E-value=0.00066 Score=53.82 Aligned_cols=97 Identities=8% Similarity=-0.038 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..+..+-..+.+.|++++|...|++..... +.+...|..+-.+|.+.|++++|...|+...+..- -+...|..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 466677788899999999999999988752 23677888888999999999999999999887642 3677888899999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 042756 270 GDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~ 288 (425)
...|++++|...|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998754
No 146
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=97.71 E-value=0.0054 Score=52.30 Aligned_cols=178 Identities=11% Similarity=-0.018 Sum_probs=121.7
Q ss_pred HHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHH
Q 042756 39 GQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEII 118 (425)
Q Consensus 39 a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll 118 (425)
|.+.|+...+. -+..++..|-..|...++.++|...+. ...+.+ ++..+..+-
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~---------------------~a~~~g----~~~a~~~lg 57 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQ---------------------KAAAQG----DGDALALLA 57 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHH---------------------HHHHTT----CHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHH---------------------HHHHcC----CHHHHHHHH
Confidence 44555555443 677777777777777665555554444 444444 555666666
Q ss_pred HHHHhcC----ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHh----cCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 119 AFLDKQG----QREEAETLILETLSKLGSRERELVLFYCNLIDSFCK----HDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 119 ~~~~~~g----~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
..|.. + +.++|.+.|++..+.+ .+ ..+..|-..|.. .++ ..+++..+.+....++. .-+..
T Consensus 58 ~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~---~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~A~~~~~~-~~~~~ 126 (212)
T 3rjv_A 58 QLKIR-NPQQADYPQARQLAEKAVEAG---SK---SGEIVLARVLVNRQAGATD---VAHAITLLQDAARDSES-DAAVD 126 (212)
T ss_dssp HHTTS-STTSCCHHHHHHHHHHHHHTT---CH---HHHHHHHHHHTCGGGSSCC---HHHHHHHHHHHTSSTTS-HHHHH
T ss_pred HHHHc-CCCCCCHHHHHHHHHHHHHCC---CH---HHHHHHHHHHHcCCCCccC---HHHHHHHHHHHHHcCCC-cchHH
Confidence 66766 6 8999999999986642 22 245566666665 445 78888888888765531 00135
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHHCCCC
Q 042756 191 ALKSMISGLCE----MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL------GLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 191 ~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~------g~~~~a~~~~~~m~~~g~~ 256 (425)
.++.|-..|.. .+++++|+..|++..+. .++...+..+-..|.+. .+.++|.+.|+...+.|..
T Consensus 127 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 127 AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88899999998 88999999999999886 23445666676676543 3899999999998887753
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=97.70 E-value=0.00035 Score=57.64 Aligned_cols=119 Identities=7% Similarity=-0.044 Sum_probs=60.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHH-HHhc
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISG-LCEM 202 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~-~~~~ 202 (425)
.|++++|.+.|++..+... .....|..+-..|...|+++.+.+.++...+..+. +...|..+..+ +...
T Consensus 23 ~~~~~~A~~~~~~al~~~p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~l~~~~ 92 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANP----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE------NAELYAALATVLYYQA 92 (177)
T ss_dssp ----CCCCHHHHHHHHHCC----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS------CHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhc
Confidence 4555666666655544311 11224455555566666644333333333332211 22355555555 5566
Q ss_pred CCh--hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 203 GQP--HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 203 g~~--~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
|++ ++|...|++..... +-+...+..+...|...|++++|...|+...+.
T Consensus 93 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 93 SQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp TTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 666 66666666666542 123455666666666677777777777666654
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.002 Score=61.29 Aligned_cols=207 Identities=6% Similarity=-0.118 Sum_probs=134.5
Q ss_pred HHHHHhhHHHHHHHHHHhHHh-cC-CC---------------HHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchh
Q 042756 29 QCLTARLTKQGQRFLSSLALA-VT-RD---------------SKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLS 91 (425)
Q Consensus 29 ~~l~~~~~~~a~~~~~~m~~~-~~-~d---------------~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~ 91 (425)
..+..|..++|.+.|..+.+. .. .+ ..++..+...|...|+++.+.+.+.+.+.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~--------- 83 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE--------- 83 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH---------
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 345678999999999998876 21 12 13477888999999988888887777532
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
++..+.... ....+.+.+-..+...|+.+.|.+++.+.... ..........++..+...|...|+++.+.
T Consensus 84 -----~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 84 -----YMMQFAKSK---TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp -----HHHTSCHHH---HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred -----HHHHccchH---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 111111110 01112222333334568899999998887542 11112222346788999999999965555
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHcCCCHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK----GLEPS--GFEYKCIIYGYGRLGLLEDM 243 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ty~~ll~~~~~~g~~~~a 243 (425)
+.+..+.........-.-...+|..++..|...|++++|..++++.... +..|. ...+..+...+...|++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5555444433332222223468999999999999999999999987653 22222 34677777888999999999
Q ss_pred HHHHHHHHH
Q 042756 244 ERIVNQMES 252 (425)
Q Consensus 244 ~~~~~~m~~ 252 (425)
...|.+..+
T Consensus 236 ~~~~~~a~~ 244 (434)
T 4b4t_Q 236 FSYFFESFE 244 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988877654
No 149
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.69 E-value=0.0013 Score=60.71 Aligned_cols=119 Identities=8% Similarity=-0.158 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS----------------GFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..|..+-..|.+.|++++|...|++..... |+ ...|..+-.+|.+.|++++|...|+...+.
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 478888888889999999999999888753 33 479999999999999999999999999876
Q ss_pred CCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHh
Q 042756 254 GTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 254 g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~ 313 (425)
. +.+...|..+-.+|...|++++|...|++..+. .| +...+..+-..+...++..++
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4 237889999999999999999999999998875 34 456777777788888877654
No 150
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=97.65 E-value=0.0005 Score=55.51 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+...+..+-..+.+.|++++|.+.|++..+. .|.....|..+-.+|.+.|+++++.+.++...+..+.. .
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~------~ 104 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND------Y 104 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC------C
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC------c
Confidence 3445667778889999999999999998875 22224467888999999999666555555555543322 3
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF 225 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 225 (425)
..|..+-.+|.+.|++++|...|++..+. .||..
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 48999999999999999999999999885 45543
No 151
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.63 E-value=0.00085 Score=52.14 Aligned_cols=95 Identities=15% Similarity=0.009 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
.+...-..|.+.|++++|.+.|++..+. .|.....|..+-.+|.+.|+++++.+.++...+.-+ .+...|
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~~~a~ 84 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS------KFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------hhhHHH
Confidence 3444555566666666666666665543 111122445555555555553333333322222211 112355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
..+-.+|...|++++|.+.|++..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555555555554
No 152
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.61 E-value=0.0016 Score=50.53 Aligned_cols=110 Identities=9% Similarity=-0.023 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hh
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQ 190 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~ 190 (425)
..+..+-..+.+.|++++|++.|++..+. .|.....|..+-.+|.+.|+++.+.+.++...+..+......+. ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 34556777788888888888888887764 22224467778888888888655555555544443332111111 23
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEY 227 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty 227 (425)
+|..+-.++...|++++|++.|++.... .||..+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 5666667777777888888877776653 4554443
No 153
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.57 E-value=0.0012 Score=64.09 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCC--CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMES-----DGT--RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~--~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
+++.|-..|...|++++|+.++++..+ .|- .-...+.+.+-.++...|.+++|+.+|.++++
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555554443322 121 11234445555666666666777777766654
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.56 E-value=0.0036 Score=55.81 Aligned_cols=216 Identities=8% Similarity=-0.075 Sum_probs=123.0
Q ss_pred HHhhHHHHHHHHHHhHHhcCCCHHHHHHH-------HHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHH---HHHHh
Q 042756 32 TARLTKQGQRFLSSLALAVTRDSKAASRL-------ISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFP---LYMRI 101 (425)
Q Consensus 32 ~~~~~~~a~~~~~~m~~~~~~d~~~~~~l-------l~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~---lf~~m 101 (425)
..++..+|.+.|......-+-....|+-+ ...+.+.+....++..+.+.+.-. |+.+..... +|.++
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~---p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS---MSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC---GGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC---hhhhhhhhccCCccccc
Confidence 46788999999999988755567888777 344444444444444444443211 000000000 00000
Q ss_pred hhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc
Q 042756 102 TEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS 181 (425)
Q Consensus 102 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~ 181 (425)
. ....+++ ...-.....+...|++++|.++|+.+... .+... ..-.+-..+.+.+++++ +...+......
T Consensus 95 ~-~~v~~r~-dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~~~-~~~~~a~l~~~~~r~~d---A~~~l~~a~~~ 164 (282)
T 4f3v_A 95 T-YPVTSPL-AITMGFAACEAAQGNYADAMEALEAAPVA----GSEHL-VAWMKAVVYGAAERWTD---VIDQVKSAGKW 164 (282)
T ss_dssp E-EECSSHH-HHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCHHH-HHHHHHHHHHHTTCHHH---HHHHHTTGGGC
T ss_pred c-cccCCHh-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCchH-HHHHHHHHHHHcCCHHH---HHHHHHHhhcc
Confidence 0 0001111 23444667788899999999999887653 12222 23344457778888544 44444333211
Q ss_pred CCCCcc--ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 182 SSSVYV--KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 182 ~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
..| ....+..+-.++.+.|++++|++.|++.......|. .......-.++.+.|+.++|..+|+++.... |
T Consensus 165 ---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P 239 (282)
T 4f3v_A 165 ---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--P 239 (282)
T ss_dssp ---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--C
T ss_pred ---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 111 123666777888888888888888888875443354 2244555567778888888888888887753 4
Q ss_pred CHHhHHHH
Q 042756 258 DTVCSNMV 265 (425)
Q Consensus 258 ~~~~yn~l 265 (425)
+...+..|
T Consensus 240 ~~~~~~aL 247 (282)
T 4f3v_A 240 EPKVAAAL 247 (282)
T ss_dssp CHHHHHHH
T ss_pred cHHHHHHH
Confidence 44444433
No 155
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=97.56 E-value=0.015 Score=52.74 Aligned_cols=209 Identities=6% Similarity=-0.083 Sum_probs=142.4
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH----Hhc-
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG--QREEAETLILETLSKLGSRERELVLFYCNLIDSF----CKH- 162 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~----~~~- 162 (425)
..++|+++++.+...+. -+..+|+.--..+...| ++++++++++.+..... .. ..+|+.--..+ .+.
T Consensus 48 ~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~---y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KN---YQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TC---CHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-cc---HHHHHHHHHHHHHHHHhcc
Confidence 34567777777665541 14455676667777778 99999999999887522 12 22454433333 444
Q ss_pred --CCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC
Q 042756 163 --DSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH--EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG 238 (425)
Q Consensus 163 --g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g 238 (425)
++ ..+.+..+.++....+ -+-.+|+.---.+.+.|.++ ++++.++++.+... -|...|+.--....+.|
T Consensus 122 ~~~~---~~~EL~~~~~~l~~~p---kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFD---PYREFDILEAMLSSDP---KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCC---THHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSG
T ss_pred ccCC---HHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcc
Confidence 45 4555566666554332 23458888888888889888 99999999998643 26677777666677777
Q ss_pred C------HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHHHHH
Q 042756 239 L------LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR-MVLWLQKMKDSG--IPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 239 ~------~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~-A~~l~~~M~~~g--~~pd~~t~~~ll~~~~~~~~ 309 (425)
+ ++++.+.++....... -|...|+-+-..+.+.|+..+ +..+..+..+.+ -..+...+..+...|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 8999999999887654 389999999999999888544 555777665432 13466778888888776555
Q ss_pred HHH
Q 042756 310 MLQ 312 (425)
Q Consensus 310 ~~~ 312 (425)
.++
T Consensus 274 ~~~ 276 (306)
T 3dra_A 274 YNE 276 (306)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 156
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.55 E-value=0.001 Score=50.97 Aligned_cols=114 Identities=7% Similarity=-0.052 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-h
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-R 189 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~ 189 (425)
+..+..+...+...|++++|...|++..+... .....+..+...|...|+++.+.+.++...+..+......+. .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34566677778888888888888888776521 112356677777777787555554444444443221100000 4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
.+|..+..+|.+.|++++|.+.|++..+. .|+......+
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 46677777777777777777777777664 3444444333
No 157
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.55 E-value=0.0014 Score=63.80 Aligned_cols=109 Identities=9% Similarity=-0.047 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCC-
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLS----KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSS- 184 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~- 184 (425)
...+++.|...|...|++++|+.++++..+ ..++..|+...+++.|-..|...|+++++...++...+......+
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456899999999999999999999988754 466677888889999999999999977766655554444333211
Q ss_pred CccC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 185 VYVK-RQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 185 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
--|+ ..+.+.+-.++...+.+++|..+|.++++.
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0132 245666777777888888888888888763
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.55 E-value=0.0023 Score=49.16 Aligned_cols=101 Identities=11% Similarity=-0.070 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC---HHhHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG----FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD---TVCSN 263 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~yn 263 (425)
.+..+...+.+.|++++|...|++..... |+. ..+..+-.++.+.|++++|...|+...+..-. + ...+.
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~ 80 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLL 80 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHH
Confidence 34456677888999999999999998753 332 47777888999999999999999998875321 2 56788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 042756 264 MVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRT 296 (425)
Q Consensus 264 ~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t 296 (425)
.+..+|...|++++|...|++..+. .|+...
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 111 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQ--YPGSDA 111 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCChH
Confidence 8889999999999999999998875 365443
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.54 E-value=0.0045 Score=51.92 Aligned_cols=120 Identities=8% Similarity=-0.143 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CC---C-----------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGL-EP---S-----------GFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p---~-----------~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
.+..+-..+.+.|++++|...|++.....- .| . ...|..+-.+|.+.|++++|...++...+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 666777778888888888888888876421 11 1 2788889999999999999999999988753
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHh
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~ 313 (425)
..+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-.++...++..++
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHH
Confidence 236788999999999999999999999998765 34 455666666666666655443
No 160
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=97.52 E-value=0.0059 Score=54.40 Aligned_cols=196 Identities=8% Similarity=-0.056 Sum_probs=128.9
Q ss_pred CchhhhHHHHHHHhhhcCCCccCHHHHHHH-------HHHHHhcCChhHHHHHHHHHHH------------hcCC-----
Q 042756 88 PRLSSLAFPLYMRITEESWFQWNPKLVAEI-------IAFLDKQGQREEAETLILETLS------------KLGS----- 143 (425)
Q Consensus 88 ~~~~~~a~~lf~~m~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~l~~~m~~------------~~~~----- 143 (425)
++..+.|.+.|.+..+.+.- .+..|..+ ...+.+.++..++...+..-.. .+..
T Consensus 19 ~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 45778888889888776633 44455555 3444444445554443333222 0000
Q ss_pred --CchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 042756 144 --RERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221 (425)
Q Consensus 144 --~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 221 (425)
.+++ ..+-.+...+...|+ .+++.+.+......+ |+.....++-..+.+.+++++|+..|+...... .
T Consensus 97 ~v~~r~--dl~LayA~~L~~~g~---y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 97 PVTSPL--AITMGFAACEAAQGN---YADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp ECSSHH--HHHHHHHHHHHHHTC---HHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred ccCCHh--HHHHHHHHHHHHCCC---HHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 0111 133456777888999 566777666654432 443366666678899999999999998543321 1
Q ss_pred CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 042756 222 PS--GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTY 297 (425)
Q Consensus 222 p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~ 297 (425)
|. ...+..+-.++.+.|++++|...|++.......|. .......-.++.+.|+.++|..+|+++... .|+...+
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~ 244 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHH
Confidence 11 23677788899999999999999999886443253 346777788889999999999999999875 5763333
No 161
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.50 E-value=0.00027 Score=54.03 Aligned_cols=87 Identities=14% Similarity=0.040 Sum_probs=66.3
Q ss_pred hcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 201 EMGQPHEAENLIEEMRVKGL-EP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 201 ~~g~~~~a~~~~~~m~~~g~-~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
..|++++|+..|++..+.+. .| +...+..+-.+|.+.|++++|.+.|+...+..- -+...|..+..+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999887542 13 356788888889999999999999998887642 2577888888999999999999
Q ss_pred HHHHHHHHhC
Q 042756 279 VLWLQKMKDS 288 (425)
Q Consensus 279 ~~l~~~M~~~ 288 (425)
+..|++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 162
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.46 E-value=0.0096 Score=60.23 Aligned_cols=188 Identities=8% Similarity=-0.022 Sum_probs=129.9
Q ss_pred HHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHH-HHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 94 AFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAE-TLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 94 a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
+..+|++..... +-++..|-.....+.+.|+.++|. ++|+..... .+.. ...|-..+...-+.|+++.+.+++
T Consensus 328 v~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s---~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 328 MTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNS---AVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTC---HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445566655443 235666766777777889999996 999998753 2222 335667778888889977777777
Q ss_pred HHHHHHhhcCC----CCcc------------ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHH
Q 042756 173 ARLNQLVNSSS----SVYV------------KRQALKSMISGLCEMGQPHEAENLIEEMRVK-G-LEPSGFEYKCIIYGY 234 (425)
Q Consensus 173 ~~~~~~~~~~~----~~~p------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-~~p~~~ty~~ll~~~ 234 (425)
+.+.+...... .-.| ...+|-..+....+.|..+.|..+|.+..+. + ..+..+...+.+.-.
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 66665431000 0002 1237888899989999999999999999876 2 334444444444322
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 042756 235 GRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG 289 (425)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g 289 (425)
+ .++.+.|.++|+...+. +.-+...|...++.....|+.+.|..+|++.....
T Consensus 482 ~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 482 I-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp T-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred h-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 2 35699999999988875 33466778888998889999999999999988763
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.45 E-value=0.00096 Score=59.89 Aligned_cols=65 Identities=15% Similarity=-0.078 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQL 178 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~ 178 (425)
+...|..+-..|.+.|++++|.+.+++..+. .+.....+..+-.+|...|+++++.+.+....+.
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4555555666666666666666666665442 1112234555556666666644444444443333
No 164
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.42 E-value=0.0016 Score=50.05 Aligned_cols=95 Identities=12% Similarity=-0.036 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.+..+-..+.+.|++++|...|++..+. .| +...|..+-.++.+.|++++|...|+...+..- -+...|..+...|
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~ 95 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 95 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 5666778889999999999999999885 34 677888899999999999999999999887642 2577889999999
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 042756 270 GDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~ 288 (425)
...|++++|...|++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998753
No 165
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.39 E-value=0.0018 Score=51.81 Aligned_cols=99 Identities=11% Similarity=-0.094 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
+...+..+-..+.+.|++++|...|++..+.. |.....|..+-.+|.+.|+++++.+.++...+..+. +.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~------~~ 89 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX------EP 89 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CT
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------Cc
Confidence 44556667788889999999999999887652 222335677888888999965555555554444222 23
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..|..+-.+|...|++++|...|++..+.
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 48888888999999999999999888764
No 166
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0025 Score=49.01 Aligned_cols=95 Identities=11% Similarity=-0.095 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHH
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQAL 192 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 192 (425)
.+..+-..+.+.|++++|.+.|++..+.. |.....|..+-.+|.+.|+++++.+.++...+..+. +...|
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~ 75 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA----PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN------FVRAY 75 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC------cHHHH
Confidence 44445556666677777777776665531 111234555666666666643333333333332111 12355
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 193 KSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 193 ~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
..+-.++...|++++|...|++..+
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 5666666666666666666665554
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.36 E-value=0.0025 Score=49.62 Aligned_cols=100 Identities=14% Similarity=-0.026 Sum_probs=75.8
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.++..+..+-..+.+.|++++|...|++..+... .....|..+...+...|+++.+.+.++...+..+. +
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~ 76 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ------S 76 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------C
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------h
Confidence 4677888899999999999999999999877522 22346788888899999965555555444443211 3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
...|..+-.+|...|++++|...|++..+.
T Consensus 77 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 77 VKAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 458889999999999999999999988764
No 168
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.35 E-value=0.0022 Score=50.66 Aligned_cols=98 Identities=8% Similarity=-0.075 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
...+..+-..+.+.|++++|.+.|++..... |.....|..+-.+|.+.|+++.+.+.++...+..+. +..
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 87 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN------EPR 87 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CTH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC----CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC------CcH
Confidence 3445556777888999999999999987652 222336777888889999965555555555444222 224
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
.|..+-.+|...|++++|...|++....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888888999999999999999988764
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.34 E-value=0.0054 Score=45.73 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..+..+...+...|++++|.+.|++..+.... . ...+..+...+.+.|+++.+.+.++...+. .+ .+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~---~~~~~ 74 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-N---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KP---DWGKG 74 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT---TCHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-c---HHHHHHHHHHHHhhccHHHHHHHHHHHHHh---Cc---ccHHH
Confidence 34455556666666777776666666543111 1 223445555555555533333222222222 10 12235
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
|..+..++...|++++|.+.|++..+
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 55555555555555555555555544
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.31 E-value=0.0028 Score=51.38 Aligned_cols=99 Identities=9% Similarity=-0.016 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
++..+..+-..+.+.|++++|.+.|++..+.. +.....|..+-.+|.+.|+++++.+.++...+..+. +.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~ 79 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK------YS 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CH
Confidence 45566777777888888888888888877642 222335667777777778754444444443333211 23
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..|..+-.+|.+.|++++|.+.|++..+.
T Consensus 80 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 80 KAWSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 47777777777888888888888777664
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.26 E-value=0.0041 Score=55.67 Aligned_cols=93 Identities=12% Similarity=-0.017 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.+..+-..+.+.|++++|...|++.... .| +...|..+-.+|.+.|++++|.+.++...+.. .-+...|+.+-.+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5555556666666666666666666553 23 45556666666666666666666666655432 12455566666666
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042756 270 GDHNELSRMVLWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~ 286 (425)
...|++++|...|++..
T Consensus 83 ~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 66666666666666554
No 172
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.23 E-value=0.016 Score=46.68 Aligned_cols=112 Identities=11% Similarity=-0.014 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc-------CC---------CC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK-------GL---------EP-SGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
..+...-..+.+.|++++|+..|.+.... .- .| +...|..+-.+|.+.|++++|...++...+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 36777778888889999999988888764 00 12 235788889999999999999999999887
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR-TYNSVLNSC 304 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~-t~~~ll~~~ 304 (425)
.. +.+...|..+-.+|...|++++|...|++..+. .|+.. .....+..+
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAASVVAREMKIV 141 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 64 236888999999999999999999999998765 56654 444444433
No 173
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.19 E-value=0.0088 Score=57.68 Aligned_cols=118 Identities=7% Similarity=-0.156 Sum_probs=92.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS----------------GFEYKCIIYGYGRLGLLEDMERIVNQMESDG 254 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----------------~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g 254 (425)
.|+.+-..|.+.|++++|...|++..+.. |+ ...|..+-.+|.+.|++++|...++...+..
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 77788888888999999999998887742 22 5788888999999999999999999888754
Q ss_pred CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHHHh
Q 042756 255 TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS-VRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 255 ~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~~~~~~~~~~~ 313 (425)
- .+...|..+-.+|...|++++|...|++..+. .|+ ...+..+-..+.+.++..++
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2 36788899999999999999999999998764 453 35666666667776666544
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.14 E-value=0.0055 Score=45.25 Aligned_cols=26 Identities=12% Similarity=-0.009 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLS 139 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~ 139 (425)
+..+...+.+.|++++|...|++..+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~ 34 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQ 34 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33355555566666666666665544
No 175
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.11 E-value=0.0066 Score=48.98 Aligned_cols=110 Identities=9% Similarity=-0.080 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC----
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-------------GFEYKCIIYGYGRLGLLEDMERIVNQMESD---- 253 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------------~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~---- 253 (425)
.+...-..+.+.|++++|+..|++..+. .|+ ...|..+-.++.+.|++++|...++...+.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 5666667788889999999999988774 333 238889999999999999999999988764
Q ss_pred -CCCcC-HHhH----HHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHHHHH
Q 042756 254 -GTRVD-TVCS----NMVLSSYGDHNELSRMVLWLQKMKD-----SGIPFSVRTYNSVLN 302 (425)
Q Consensus 254 -g~~~~-~~~y----n~li~~~~~~g~~~~A~~l~~~M~~-----~g~~pd~~t~~~ll~ 302 (425)
.+.|+ ...| ...-.++...|++++|+..|++..+ .|+.+........+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~ 150 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAI 150 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 22454 5677 8888999999999999999999863 566666555554443
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.06 E-value=0.012 Score=55.03 Aligned_cols=120 Identities=10% Similarity=-0.067 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHc--------------CCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVK--------------GLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~ 255 (425)
.|..+-..+.+.|++++|++.|++..+. ...| +...|..+-.+|.+.|++++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 6788888999999999999999998761 1223 35688899999999999999999999998754
Q ss_pred CcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHh
Q 042756 256 RVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 256 ~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~~~~~~~~~~ 313 (425)
.-+...|..+-.+|...|++++|.+.|++..+. .| +...+..+-..+...++..++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 236788999999999999999999999998765 45 445566666666665555443
No 177
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.02 E-value=0.016 Score=45.32 Aligned_cols=103 Identities=12% Similarity=-0.034 Sum_probs=64.3
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC
Q 042756 109 WNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK 188 (425)
Q Consensus 109 ~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~ 188 (425)
.+...+..+...+.+.|++++|.+.|++..+... ..+.....|..+...|.+.|+++++.+.++...+..+ .+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA-TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG------GD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS------CC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc------cC
Confidence 4677788888889999999999999999876421 1111123556666667777774443333333333211 12
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
...|..+..+|...|++++|...|++....
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346666667777777777777777776653
No 178
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.01 E-value=0.0025 Score=48.41 Aligned_cols=88 Identities=13% Similarity=0.094 Sum_probs=43.4
Q ss_pred cCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcC
Q 042756 124 QGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG 203 (425)
Q Consensus 124 ~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 203 (425)
.|++++|+..|++..+.+. ..|.....+..+-..|.+.|+++++.+.++...+..+. +...+..+..++.+.|
T Consensus 3 ~g~~~~A~~~~~~al~~~~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGL-QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN------HQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCC-CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------chHHHHHHHHHHHHcC
Confidence 4666667777766654321 12333445556666666666643333333333222111 1235666666666666
Q ss_pred ChhHHHHHHHHHHHc
Q 042756 204 QPHEAENLIEEMRVK 218 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~ 218 (425)
++++|...|++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665543
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.98 E-value=0.0095 Score=57.45 Aligned_cols=95 Identities=5% Similarity=-0.124 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
..|+.+-.+|.+.|++++|+..|++..+.. +-+...|..+-.+|...|++++|...|+...+..- -+...|..+...+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 488999999999999999999999998853 23577899999999999999999999999887532 2567888888999
Q ss_pred HhcCCHHHHHH-HHHHHH
Q 042756 270 GDHNELSRMVL-WLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~~-l~~~M~ 286 (425)
.+.|+.++|.+ ++..|.
T Consensus 396 ~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 396 KKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 99998887764 556664
No 180
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.96 E-value=0.0067 Score=58.90 Aligned_cols=114 Identities=5% Similarity=-0.128 Sum_probs=77.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
-..+.+.|++++|.+.|++..+. .| +..+|..+-.+|.+.|++++|.+.++...+..- -+...|..+-.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 33456678888888888887774 34 467788888888888888888888888777532 256778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHH--HHHHHHHHHhh
Q 042756 275 LSRMVLWLQKMKDSGIPFS-VRTYNSVLNS--CSTIMSMLQDL 314 (425)
Q Consensus 275 ~~~A~~l~~~M~~~g~~pd-~~t~~~ll~~--~~~~~~~~~~~ 314 (425)
+++|.+.|++..+. .|+ ...+..+-.+ +.+.|+++++.
T Consensus 90 ~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 90 FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887653 232 2233333333 56666666553
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.94 E-value=0.004 Score=47.79 Aligned_cols=93 Identities=11% Similarity=-0.088 Sum_probs=68.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHH
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSM 195 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 195 (425)
.+-..+.+.|++++|...|++..+. .|.....|..+-.++.+.|+++.+.+.++...+..+. +...|..+
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~~~~~l 91 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK------DIAVHAAL 91 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHH
Confidence 3566788999999999999998875 2222346778888899999965555555544443221 23488899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..+|.+.|++++|...|++..+.
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 92 AVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999998763
No 182
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.90 E-value=0.14 Score=47.05 Aligned_cols=224 Identities=8% Similarity=-0.019 Sum_probs=134.6
Q ss_pred hHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHH
Q 042756 35 LTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLV 114 (425)
Q Consensus 35 ~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~ 114 (425)
..++|+++++.+...-+-+..+||.--..+...+. .+++++++++.+...+ . -+..+|
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~--------------------~l~eEL~~~~~~L~~n-P-Kny~aW 126 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK--------------------SLEDELRLMNEFAVQN-L-KSYQVW 126 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------------------CHHHHHHHHHHHHHTT-C-CCHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh--------------------hHHHHHHHHHHHHHhC-C-CcHHHH
Confidence 34556666666665533455556655555544441 3556666666665544 1 366667
Q ss_pred HHHHHHHHhc-C-ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcc-----cHHHHHHHHHHHhhcCCCCcc
Q 042756 115 AEIIAFLDKQ-G-QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR-----GFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 115 ~~ll~~~~~~-g-~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~p 187 (425)
+.--..+.+. + +.++++++++.+.+. .+.+...|+.-.-.+.+.|..+ ...+.++...++..... -
T Consensus 127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp---~ 199 (349)
T 3q7a_A 127 HHRLLLLDRISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG---R 199 (349)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---T
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---C
Confidence 7666666665 6 788999999988764 2222334554333333333322 12355555555554331 2
Q ss_pred ChhHHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCH--------------------
Q 042756 188 KRQALKSMISGLCEMGQ-------PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLL-------------------- 240 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~-------------------- 240 (425)
|-..|+-.-..+.+.+. ++++++.+++..... +-|...|+-+--.+.+.|+-
T Consensus 200 N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (349)
T 3q7a_A 200 NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDI 278 (349)
T ss_dssp CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------
T ss_pred CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccc
Confidence 44588888888888776 688899888888752 23667777665555555542
Q ss_pred HHHHHHHHHHHHCC-----CCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 241 EDMERIVNQMESDG-----TRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 241 ~~a~~~~~~m~~~g-----~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
.+...+..++...+ -.++.....-|.+.|...|+.++|.++++.+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 279 ETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22333333333222 1367889999999999999999999999998643
No 183
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=96.82 E-value=0.23 Score=45.65 Aligned_cols=204 Identities=7% Similarity=-0.130 Sum_probs=130.8
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhc-C-CcccH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQG-QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKH-D-SKRGF 168 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~-g-~~~~~ 168 (425)
++|+++++.+...+. -+..+|+.--..+...| .+++++++++.+... .|....+|+.---.+.+. + + .
T Consensus 71 e~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~---~ 141 (349)
T 3q7a_A 71 ERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQD---P 141 (349)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSC---C
T ss_pred HHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCC---h
Confidence 456666666655441 24556666666666777 599999999998864 222234566655555555 5 4 3
Q ss_pred HHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChh--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC-
Q 042756 169 DDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPH--------EAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL- 239 (425)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~- 239 (425)
++.+..+.++....+ -|-.+|+--.-.+.+.|.++ ++++.++++.+... -|...|+.--..+.+.++
T Consensus 142 ~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp HHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTC
T ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcccc
Confidence 566677777664432 24457777666666666666 99999999998642 367788888888888876
Q ss_pred ------HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC----
Q 042756 240 ------LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL--------------------SRMVLWLQKMKDSG---- 289 (425)
Q Consensus 240 ------~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~--------------------~~A~~l~~~M~~~g---- 289 (425)
++++.+.++....... -|...|+-+-..+.+.|+. .+..++..++...+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred ccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 7889999988887543 3788999888888777764 23333333333221
Q ss_pred -CCCCHHHHHHHHHHHHHHHH
Q 042756 290 -IPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 290 -~~pd~~t~~~ll~~~~~~~~ 309 (425)
-.++......|.+.|...|+
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~ 317 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNR 317 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTC
T ss_pred cCCCcHHHHHHHHHHHHhcCC
Confidence 13566777777777765443
No 184
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0012 Score=49.20 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..|..+-..+.+.|++++|.+.|++..+.. +.+...+..+-.++.+.|++++|.+.|+...+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 355566666666666666666666665531 124455666666666666666666666665543
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=96.77 E-value=0.0026 Score=61.87 Aligned_cols=91 Identities=8% Similarity=-0.180 Sum_probs=49.8
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..|+.+-.+|.+.|++++|++.|++..+. .| +..+|..+-.+|.+.|++++|.+.|+...+..- -+...+..+-.+
T Consensus 41 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~ 117 (477)
T 1wao_1 41 IYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 36666666666666666666666666653 23 345666666666666666666666666554321 123344444444
Q ss_pred --HHhcCCHHHHHHHHH
Q 042756 269 --YGDHNELSRMVLWLQ 283 (425)
Q Consensus 269 --~~~~g~~~~A~~l~~ 283 (425)
+.+.|++++|+++++
T Consensus 118 ~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 118 NKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhcccc
Confidence 566666667766666
No 186
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.75 E-value=0.051 Score=41.29 Aligned_cols=95 Identities=11% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----HHHHHH
Q 042756 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS----GFEYKC 229 (425)
Q Consensus 154 ~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~ty~~ 229 (425)
.+-..+.+.|+++.+.+.++.+.+..+.. ......+..+-.++.+.|++++|...|++..... |+ ...+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNG---VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSS---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCC---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 45566778899555444444444332211 1111378888899999999999999999998853 43 567888
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+-.++.+.|++++|...|+...+.
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999999999999999998875
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.75 E-value=0.023 Score=42.65 Aligned_cols=102 Identities=5% Similarity=-0.086 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 206 ~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
++|++.|++..+.. +.+...+..+-..|.+.|++++|.+.|+...+.. ..+...|..+-..|...|++++|...|++.
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667777776642 2356788888888888889988888888877653 235678888888889999999999998887
Q ss_pred HhCC-CCCCHHHHHHHHHHHHHHHH
Q 042756 286 KDSG-IPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 286 ~~~g-~~pd~~t~~~ll~~~~~~~~ 309 (425)
.+.. -.++......+...+...+.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~ 104 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLAR 104 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhcc
Confidence 6431 12344555555555444443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.70 E-value=0.019 Score=53.67 Aligned_cols=138 Identities=12% Similarity=-0.058 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhH
Q 042756 112 KLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQA 191 (425)
Q Consensus 112 ~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 191 (425)
..+..+-..+.+.|++++|.+.|++..+. .+. .. .... .++... ..+ -+...
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~----~~~----~~-------~~~~---~~~~~~----~~~------~~~~~ 275 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY----VEG----SR-------AAAE---DADGAK----LQP------VALSC 275 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HHH----HH-------HHSC---HHHHGG----GHH------HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hhc----Cc-------cccC---hHHHHH----HHH------HHHHH
Confidence 34666788888999999999999887652 000 00 0111 111111 100 11238
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHH
Q 042756 192 LKSMISGLCEMGQPHEAENLIEEMRVKGLEP-SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYG 270 (425)
Q Consensus 192 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~ 270 (425)
|+.+-.+|.+.|++++|++.+++..+. .| +...|..+-.+|.+.|++++|.+.|+...+..- -+...+..+-..+.
T Consensus 276 ~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~ 352 (370)
T 1ihg_A 276 VLNIGACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQ 352 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 888888888999999999999988874 34 567888888889999999999999988876531 25677777888888
Q ss_pred hcCCHHHHHH
Q 042756 271 DHNELSRMVL 280 (425)
Q Consensus 271 ~~g~~~~A~~ 280 (425)
..++.+++.+
T Consensus 353 ~~~~~~~a~k 362 (370)
T 1ihg_A 353 KIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777754
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.61 E-value=0.026 Score=45.30 Aligned_cols=116 Identities=16% Similarity=0.086 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 111 PKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 111 ~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
+..+...-..+.+.|++++|.+.|.+..+.. .......+....+ ...+. + -+..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~---------------~~~~~~~~~~~~~--~~~~~---~------~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRL---------------DTLILREKPGEPE--WVELD---R------KNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHHHTSCTTSHH--HHHHH---H------THHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHhcccCCCCHHH--HHHHH---H------HHHH
Confidence 3456667778889999999999998876420 0000011111110 01000 0 1122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
.|..+-.+|.+.|++++|+..+++..... +.+...|..+-.+|...|++++|...|+...+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 67777777777888888888877777642 224667777777788888888888887777664
No 190
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.59 E-value=0.097 Score=40.93 Aligned_cols=110 Identities=7% Similarity=-0.113 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----LGLLEDM 243 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~a 243 (425)
..+++..+.+....++. + .+ +-..|...+.+++|++.|++..+.| +...+..+-..|.. .++.++|
T Consensus 11 ~~~A~~~~~~aa~~g~~---~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 11 LKKAIQYYVKACELNEM---F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHTTCT---T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHHcCCCH---h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 56677777777665532 2 44 6666777788899999999999876 66788888888887 8899999
Q ss_pred HHHHHHHHHCCCCcCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 042756 244 ERIVNQMESDGTRVDTVCSNMVLSSYGD----HNELSRMVLWLQKMKDSGI 290 (425)
Q Consensus 244 ~~~~~~m~~~g~~~~~~~yn~li~~~~~----~g~~~~A~~l~~~M~~~g~ 290 (425)
.+.|+...+.| +...+..|-..|.. .++.++|..+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999876 67778888888888 8999999999999988873
No 191
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.044 Score=40.27 Aligned_cols=70 Identities=10% Similarity=-0.073 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 222 p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
++...+..+-..+.+.|++++|.+.|+...+.. +.+...|..+-.+|...|++++|+..|++..+. .|+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 345678888899999999999999999988753 236788999999999999999999999998864 4654
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.42 E-value=0.042 Score=38.71 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
.|..+-..+.+.|++++|...|++..+.. +.+...+..+-.++.+.|++++|.+.|+...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55555555666666666666666655432 12344555555555555666666555555544
No 193
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.41 E-value=0.02 Score=54.57 Aligned_cols=85 Identities=9% Similarity=-0.157 Sum_probs=69.3
Q ss_pred cCChhHHHHHHHHHHHc---CC---CCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCC-Cc-CHHhHHHHHH
Q 042756 202 MGQPHEAENLIEEMRVK---GL---EPS-GFEYKCIIYGYGRLGLLEDMERIVNQMES-----DGT-RV-DTVCSNMVLS 267 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~---g~---~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~-~~-~~~~yn~li~ 267 (425)
.|++++|+.++++..+. -+ .|+ ..+++.+..+|...|++++|+.++++..+ .|- .| ...+||.|-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 57899999999988763 12 233 45899999999999999999999998764 221 23 3688999999
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 042756 268 SYGDHNELSRMVLWLQKMK 286 (425)
Q Consensus 268 ~~~~~g~~~~A~~l~~~M~ 286 (425)
.|...|++++|+.+|++..
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 9999999999999999875
No 194
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.40 E-value=0.032 Score=53.20 Aligned_cols=109 Identities=12% Similarity=-0.036 Sum_probs=81.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-----C-CCc-CH
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKG---LEP----SGFEYKCIIYGYGRLGLLEDMERIVNQMESD-----G-TRV-DT 259 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g---~~p----~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~-----g-~~~-~~ 259 (425)
..+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++..+- | -.| ..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34566778899999999999998642 223 2458999999999999999999999977642 2 123 36
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHHHHHHHHH
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQKMKD---SGIPFSVRTYNSVLN 302 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~~M~~---~g~~pd~~t~~~ll~ 302 (425)
.+|+.|-..|...|++++|+.+|++..+ .-..||......+.+
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~ 417 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL 417 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 8899999999999999999999998753 233455544444433
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.34 E-value=0.015 Score=53.47 Aligned_cols=98 Identities=10% Similarity=-0.093 Sum_probs=74.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGF------------------EYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~------------------ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
.|..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++...+
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666667777788888888888887653 34433 788888889999999999999998876
Q ss_pred CCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 253 DGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 253 ~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
.. ..+...|..+-.+|...|++++|...|++..+. .|+
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~ 296 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APD 296 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC
Confidence 53 236788899999999999999999999987653 454
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.29 E-value=0.4 Score=46.50 Aligned_cols=177 Identities=10% Similarity=-0.008 Sum_probs=112.6
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHH
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDD 170 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~ 170 (425)
.+.+..+|++..... +.++..|-..+..+.+.|+++.|.++|++.... +.... .|- +|+.....+ +
T Consensus 195 ~~Rv~~~ye~al~~~--p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~---l~~----~y~~~~e~~---~ 260 (493)
T 2uy1_A 195 ESRMHFIHNYILDSF--YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF---LSL----YYGLVMDEE---A 260 (493)
T ss_dssp HHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH---HHH----HHHHHTTCT---H
T ss_pred HHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH---HHH----HHHhhcchh---H
Confidence 345677888876653 245777777788888999999999999998877 33322 111 233322211 2
Q ss_pred HHHHHHHHhhcCC-------CCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHcCCCHH
Q 042756 171 TYARLNQLVNSSS-------SVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKC--IIYGYGRLGLLE 241 (425)
Q Consensus 171 ~~~~~~~~~~~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~--ll~~~~~~g~~~ 241 (425)
.++.+.+...... ........|-..+....+.+..+.|..+|++....+ .+...|.. .+.... .++.+
T Consensus 261 ~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~ 337 (493)
T 2uy1_A 261 VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRA 337 (493)
T ss_dssp HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSH
T ss_pred HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChH
Confidence 2333332211000 001112478888888888889999999999992222 23444443 333322 23799
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
.|.++|+...+.. .-+...|...++-....|+.+.|..+|++.
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999887742 123455777888888899999999999997
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.29 E-value=0.028 Score=53.63 Aligned_cols=92 Identities=3% Similarity=-0.085 Sum_probs=41.2
Q ss_pred CChhHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC-CCccC-hhHHHHHHHH
Q 042756 125 GQREEAETLILETLS----KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS-SVYVK-RQALKSMISG 198 (425)
Q Consensus 125 g~~~~A~~l~~~m~~----~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~p~-~~~~~~li~~ 198 (425)
|++++|+.++++..+ ..++..+....+++.|..+|...|+++++...++...+.....- .--|+ ..+||.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455666666555433 23333444444555555555555554443333333322222110 01122 2345555555
Q ss_pred HHhcCChhHHHHHHHHHH
Q 042756 199 LCEMGQPHEAENLIEEMR 216 (425)
Q Consensus 199 ~~~~g~~~~a~~~~~~m~ 216 (425)
|...|++++|+.+|++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 555555555555555443
No 198
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.29 E-value=0.033 Score=40.78 Aligned_cols=83 Identities=2% Similarity=-0.121 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHH
Q 042756 223 SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSG-IPFSVRTYNSVL 301 (425)
Q Consensus 223 ~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g-~~pd~~t~~~ll 301 (425)
+...+..+-.+|.+.|++++|.+.|+...+..- -+...|..+-.+|...|++++|.+.|++..+.. -.++.....-+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~ 84 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ 84 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence 344556666666666666666666666655431 135566666667777777777777766654321 123444444444
Q ss_pred HHHHH
Q 042756 302 NSCST 306 (425)
Q Consensus 302 ~~~~~ 306 (425)
..+.+
T Consensus 85 ~~l~~ 89 (100)
T 3ma5_A 85 DAKLK 89 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 199
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=96.29 E-value=0.021 Score=52.58 Aligned_cols=95 Identities=7% Similarity=-0.041 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHH-
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSS- 268 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~- 268 (425)
.|+.+-.+|.+.|++++|+..|++..+.. .-+...|..+-.+|...|++++|.+.|+...+. .| +...++.+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
Confidence 88999999999999999999999998753 236789999999999999999999999988754 23 44555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 042756 269 YGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 269 ~~~~g~~~~A~~l~~~M~~~ 288 (425)
....+..+++.++|.+|...
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHhhCC
Confidence 33456678888899888643
No 200
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.20 E-value=0.06 Score=37.84 Aligned_cols=78 Identities=8% Similarity=0.009 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 042756 224 GFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF-SVRTYNSVLN 302 (425)
Q Consensus 224 ~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~ 302 (425)
...+..+-..+.+.|++++|.+.|+...+.. +.+...|..+-..|...|++++|...|++..+. .| +...+..+-.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~ 85 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 4577888889999999999999999988753 236788999999999999999999999998765 34 3444444433
Q ss_pred HH
Q 042756 303 SC 304 (425)
Q Consensus 303 ~~ 304 (425)
.+
T Consensus 86 ~~ 87 (91)
T 1na3_A 86 AK 87 (91)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 201
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.12 E-value=0.094 Score=42.16 Aligned_cols=27 Identities=11% Similarity=-0.059 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHh
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSK 140 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~ 140 (425)
+...-..+.+.|++++|.+.|++..+-
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l 40 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI 40 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 444556677788888888888887664
No 202
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.93 E-value=0.38 Score=44.36 Aligned_cols=75 Identities=7% Similarity=-0.137 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 042756 222 PSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSV 300 (425)
Q Consensus 222 p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~l 300 (425)
.+..+|..+-..+...|++++|...++.....+ |+...|..+-..+.-.|++++|.+.|++.... .|...||...
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~~ 349 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYWI 349 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHHH
Confidence 345555555555555566666666666665553 55555555555556666666666666655433 4555555443
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=95.84 E-value=0.18 Score=48.03 Aligned_cols=70 Identities=9% Similarity=-0.137 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----hcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLS----KLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLV 179 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~----~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~ 179 (425)
...+++.+...|...|++++|+.++++..+ ..++..|....+++.|-..|...|+++++...++...+..
T Consensus 328 ~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 328 QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999999998764 4566777878889999999999999766655555444443
No 204
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=95.68 E-value=1.7 Score=42.09 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHH
Q 042756 150 LFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYK 228 (425)
Q Consensus 150 ~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~ 228 (425)
..|...++...+.+..+.+.+++. +. ... ...+......+.+.... .++.+.|..+|+...+.- |+ ...+.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~---~A-~~~-~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~ 358 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFI---EL-GNE-GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKE 358 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHH---HH-TTS-CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH---Hh-hCC-CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHH
Confidence 456777777777777444444444 43 111 12222222223333333 336999999999998753 33 34456
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 229 CIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 229 ~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
..++...+.|+.+.|..+|+... .....|...+.-=...|+.+.+.++++++..
T Consensus 359 ~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 359 EFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777788999999999999973 2678899999888889999999999998763
No 205
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=95.56 E-value=0.24 Score=38.60 Aligned_cols=111 Identities=6% Similarity=-0.130 Sum_probs=61.7
Q ss_pred ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHh----
Q 042756 126 QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCE---- 201 (425)
Q Consensus 126 ~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~---- 201 (425)
+.++|.+.|++..+.+.+ . .. |-..|...+. .+++++.+.+....++ ...++.|-..|..
T Consensus 10 d~~~A~~~~~~aa~~g~~-~-----a~--lg~~y~~g~~---~~~A~~~~~~Aa~~g~-----~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F-----GC--LSLVSNSQIN---KQKLFQYLSKACELNS-----GNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T-----HH--HHHHTCTTSC---HHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHcCCCH-h-----hh--HHHHHHcCCC---HHHHHHHHHHHHcCCC-----HHHHHHHHHHHHcCCCC
Confidence 455666666665554321 1 11 2233333333 3445555555544432 2255666666665
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCC
Q 042756 202 MGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGR----LGLLEDMERIVNQMESDGT 255 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~----~g~~~~a~~~~~~m~~~g~ 255 (425)
.+++++|+++|++..+.| +...+..+-..|.. .++.++|.+.|+.-.+.|.
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 567777777777776654 45556666666666 6677777777777766653
No 206
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=95.53 E-value=1.4 Score=40.12 Aligned_cols=156 Identities=6% Similarity=-0.051 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCC-h
Q 042756 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQ-P 205 (425)
Q Consensus 127 ~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~ 205 (425)
+++++.+++.+... .|....+|+.---.+.+.++. ..++.+..+.++....+ -|-.+|+----.+...|. .
T Consensus 90 l~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l~~~-~~~~EL~~~~k~l~~dp---rNy~AW~~R~~vl~~l~~~~ 161 (331)
T 3dss_A 90 VKAELGFLESCLRV----NPKSYGTWHHRCWLLSRLPEP-NWARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAP 161 (331)
T ss_dssp HHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHCSSC-CHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHh----CCCCHHHHHHHHHHHhccCcc-cHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCcCH
Confidence 67888888888764 222233566655666666642 14555555555554332 244588888777888888 5
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC--------------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL--------------GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 206 ~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~--------------g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
+++++.++++.+... -|...|+..-..+.+. +.++++.+.++....... -|...|+-+-..+.+
T Consensus 162 ~eel~~~~~~I~~~p-~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~ 239 (331)
T 3dss_A 162 AEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGA 239 (331)
T ss_dssp HHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence 899999999998642 3566776655554443 457889999988876542 378888877766666
Q ss_pred c-----------CCHHHHHHHHHHHHhCCCCCCH
Q 042756 272 H-----------NELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 272 ~-----------g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
. +.++++++.++++.+. .||.
T Consensus 240 ~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 240 GSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp SSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred ccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 5 4578999999999865 5765
No 207
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=95.53 E-value=0.12 Score=38.55 Aligned_cols=80 Identities=9% Similarity=-0.073 Sum_probs=54.7
Q ss_pred hHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHH
Q 042756 93 LAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTY 172 (425)
Q Consensus 93 ~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~ 172 (425)
.|+..|++..+.+ +-+...+..+-..|.+.|++++|.+.|++..+... .....|..+-.+|.+.|+++++.+.+
T Consensus 3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP----TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC----CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4566666665543 23677788888888999999999999988876522 22335677888888888865555555
Q ss_pred HHHHHH
Q 042756 173 ARLNQL 178 (425)
Q Consensus 173 ~~~~~~ 178 (425)
+...+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 544443
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=95.39 E-value=0.057 Score=43.38 Aligned_cols=106 Identities=7% Similarity=-0.071 Sum_probs=71.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC----------HHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 200 CEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL----------LEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 200 ~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~----------~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
.+.+.+++|.+.+++..+.+ +-+...|..+-.++...++ +++|...|++..+..-. +...|+.+-.+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34455666777776666542 2245566656556665554 45888888877765321 567788888888
Q ss_pred Hhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 270 GDH-----------NELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 270 ~~~-----------g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
... |++++|++.|++..+. .|+...|...+...-+...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~~~ka~e 139 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAKAPQ 139 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhCHh
Confidence 766 4899999999998864 7888888777776655444
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.38 E-value=0.086 Score=38.42 Aligned_cols=63 Identities=16% Similarity=-0.003 Sum_probs=52.3
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
...|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578888899999999999999999988753 22456888889999999999999999987765
No 210
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.29 E-value=0.59 Score=48.01 Aligned_cols=151 Identities=9% Similarity=-0.045 Sum_probs=79.8
Q ss_pred HHHHhhHHHHHH-HHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCC--CCCCchhhhHHHHHHHhhhcCC
Q 042756 30 CLTARLTKQGQR-FLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPD--TTHPRLSSLAFPLYMRITEESW 106 (425)
Q Consensus 30 ~l~~~~~~~a~~-~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~--~~~~~~~~~a~~lf~~m~~~~~ 106 (425)
.+..+++++|.+ ++..+ ++......++..+.+.|..+.|+.+...-..+- ....+.++.|+++.+.+
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~----- 678 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDE----- 678 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTC-----
T ss_pred HHHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhh-----
Confidence 355667777766 44322 212233777777777787777665442110000 00001344455443322
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCc
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVY 186 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 186 (425)
.+...|..+-..+.+.|+++.|++.|..+.. |..+...|...|+.+.+.++.+.... .+
T Consensus 679 --~~~~~W~~la~~al~~~~~~~A~~~y~~~~d------------~~~l~~l~~~~~~~~~~~~~~~~a~~---~~---- 737 (814)
T 3mkq_A 679 --SAEMKWRALGDASLQRFNFKLAIEAFTNAHD------------LESLFLLHSSFNNKEGLVTLAKDAET---TG---- 737 (814)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC------------HHHHHHHHHHTTCHHHHHHHHHHHHH---TT----
T ss_pred --CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC------------hhhhHHHHHHcCCHHHHHHHHHHHHH---cC----
Confidence 2556777777777788888888887777631 34455555556664333332222222 11
Q ss_pred cChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 042756 187 VKRQALKSMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 187 p~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (425)
-++.-..+|.+.|++++|.+++.++
T Consensus 738 ----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 ----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp ----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred ----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4455555666666666666665543
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=95.26 E-value=0.74 Score=42.38 Aligned_cols=55 Identities=7% Similarity=-0.175 Sum_probs=29.5
Q ss_pred cCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 257 VDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 257 ~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
.+..+|.++-..+...|++++|...+++....+ |+...|..+-..+.-.|+.+.+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA 329 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREA 329 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHH
Confidence 355566665555555566666666666665553 5554444443444444444444
No 212
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=95.19 E-value=0.74 Score=45.45 Aligned_cols=176 Identities=7% Similarity=-0.053 Sum_probs=115.9
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQ----------REEAETLILETLSKLGSRERELVLFYCNLIDSF 159 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~ 159 (425)
..++|++.++.+...+. -+..+|+.-=..+.+.|+ ++++.++++++.+. .|....+|+.---.+
T Consensus 44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLL 117 (567)
T ss_dssp CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence 44667777777766542 144456655555555555 88999999998875 222234566666666
Q ss_pred HhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-
Q 042756 160 CKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMG-QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL- 237 (425)
Q Consensus 160 ~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~- 237 (425)
.+.++.+ .++++..+.++..... -+-.+|+---..+.+.| ..+++++.++++.+... -|...|+..-..+.+.
T Consensus 118 ~~l~~~~-~~~el~~~~k~l~~d~---~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~ 192 (567)
T 1dce_A 118 SRLPEPN-WARELELCARFLEADE---RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLH 192 (567)
T ss_dssp HTCSSCC-HHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHS
T ss_pred HHccccc-HHHHHHHHHHHHhhcc---ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhc
Confidence 7777321 3455555555544331 24458888888888888 88999999999887532 2566777666665552
Q ss_pred -------------CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHH
Q 042756 238 -------------GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSR 277 (425)
Q Consensus 238 -------------g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~ 277 (425)
+.++++.+.++......- -|...|+-+-..+.+.++.++
T Consensus 193 ~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 193 PQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 557889888888776532 368889988888887777444
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=94.95 E-value=0.77 Score=45.35 Aligned_cols=171 Identities=6% Similarity=-0.063 Sum_probs=117.3
Q ss_pred hcCC-hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCc-------ccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 123 KQGQ-REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSK-------RGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 123 ~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
+.|. -++|.+.++++... .|....+|+.--..+.+.|+. +..++++..+.+.....+. +-.+|+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~----nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~aW~h 112 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA----NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHH 112 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH----CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHH
Confidence 3444 56789999998875 222233565544444444441 1145566666666544322 2348888
Q ss_pred HHHHHHhcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHh
Q 042756 195 MISGLCEMG--QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG-LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGD 271 (425)
Q Consensus 195 li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~ 271 (425)
---.+.+.| +++++++.++++.+... -|...|+.---++.+.| .++++.+.++.+.+.... |...|+..-..+.+
T Consensus 113 R~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~ 190 (567)
T 1dce_A 113 RCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 190 (567)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHh
Confidence 888888899 66999999999998642 26778888777788888 899999999999887543 78889888887766
Q ss_pred c--------------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 042756 272 H--------------NELSRMVLWLQKMKDSGIPF-SVRTYNSVLNSC 304 (425)
Q Consensus 272 ~--------------g~~~~A~~l~~~M~~~g~~p-d~~t~~~ll~~~ 304 (425)
. +.+++|++++++.+.. .| |...|...--.+
T Consensus 191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll 236 (567)
T 1dce_A 191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLL 236 (567)
T ss_dssp HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHH
T ss_pred hcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHH
Confidence 3 5578999999988764 34 445565554433
No 214
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=94.75 E-value=0.043 Score=44.08 Aligned_cols=117 Identities=7% Similarity=-0.049 Sum_probs=67.6
Q ss_pred HhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcc-------cHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 122 DKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKR-------GFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 122 ~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
.+.+++++|.+.++...+.. |.....|..+-.++.+.++++ .++++...+++.+.-.+. +...|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~----P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN----PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHH
Confidence 44556777777777666541 111224555555555555433 133555555555443211 2347777
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 195 MISGLCEM-----------GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 195 li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+-.+|... |++++|++.|++..+ +.|+...|...+... +.|-+++-.....
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~ 147 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 147 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence 88888766 489999999999888 578777776665532 3344444444443
No 215
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.73 E-value=1.1 Score=34.63 Aligned_cols=138 Identities=12% Similarity=0.024 Sum_probs=82.4
Q ss_pred hcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc
Q 042756 123 KQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM 202 (425)
Q Consensus 123 ~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 202 (425)
-.|.+++..++..+..+... ..-||=+|.-....-+ .+..++.+.....-.. +.|- .-.-.++++|++.
T Consensus 19 ldG~v~qGveii~k~~~ssn------i~E~NW~ICNiiD~a~---C~y~v~vLd~IGkiFD-is~C-~NlKrVi~C~~~~ 87 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSST------KSEYNWFICNLLESID---CRYMFQVLDKIGSYFD-LDKC-QNLKSVVECGVIN 87 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSC------HHHHTHHHHHHHHHCC---HHHHHHHHHHHGGGSC-GGGC-SCTHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHcCCCC------ccccceeeeecchhhc---hhHHHHHHHHHhhhcC-cHhh-hcHHHHHHHHHHh
Confidence 35888899999998876421 1234556666666666 6667777776653322 1110 0223344444443
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHH
Q 042756 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWL 282 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~ 282 (425)
+. +..-+...++....+|.-+.-.++..++.. +.+|++...-.+-.+|.+.|+..+|.+++
T Consensus 88 n~------------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl 148 (172)
T 1wy6_A 88 NT------------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLL 148 (172)
T ss_dssp TC------------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cc------------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence 32 233445556667777777777777777533 23456666667777777777777777777
Q ss_pred HHHHhCCC
Q 042756 283 QKMKDSGI 290 (425)
Q Consensus 283 ~~M~~~g~ 290 (425)
.+.-+.|+
T Consensus 149 ~~AC~kG~ 156 (172)
T 1wy6_A 149 IEACKKGE 156 (172)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhhh
Confidence 77777765
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.60 E-value=0.41 Score=49.20 Aligned_cols=131 Identities=13% Similarity=0.084 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHH
Q 042756 115 AEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKS 194 (425)
Q Consensus 115 ~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 194 (425)
..++..+.+.|..++|.++.+.- . .-.......|+ +++|++..... .+...|..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~---------~------~~f~~~l~~~~---~~~A~~~~~~~--------~~~~~W~~ 686 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ---------D------QKFELALKVGQ---LTLARDLLTDE--------SAEMKWRA 686 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH---------H------HHHHHHHHHTC---HHHHHHHHTTC--------CCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCc---------c------hheehhhhcCC---HHHHHHHHHhh--------CcHhHHHH
Confidence 55777777888888887765321 1 01223345677 55666654332 23459999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE 274 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~ 274 (425)
+-..+.+.|+++.|.+.|.++.. |..+...|...|+.+...++-+.....|- ++.-..+|.+.|+
T Consensus 687 la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~ 751 (814)
T 3mkq_A 687 LGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGD 751 (814)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCC
Confidence 99999999999999999998754 44555566667777776666666555542 4555566667777
Q ss_pred HHHHHHHHHHHH
Q 042756 275 LSRMVLWLQKMK 286 (425)
Q Consensus 275 ~~~A~~l~~~M~ 286 (425)
+++|+++|.++.
T Consensus 752 ~~~a~~~~~~~~ 763 (814)
T 3mkq_A 752 IQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC
Confidence 777777776654
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.33 E-value=0.13 Score=36.90 Aligned_cols=55 Identities=20% Similarity=0.165 Sum_probs=32.5
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEP-SGF-EYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~-ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
..+.+.|++++|.+.|++..+. .| +.. .+..+-.+|.+.|++++|.+.|+...+.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455566666666666666553 23 334 5556666666666666666666665554
No 218
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=94.09 E-value=3.3 Score=37.56 Aligned_cols=223 Identities=6% Similarity=-0.115 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHH
Q 042756 36 TKQGQRFLSSLALAVTRDSKAASRLISKFVASSP---QFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPK 112 (425)
Q Consensus 36 ~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~---~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~ 112 (425)
.++|+++++.+...-+-+..+||.-=..+...+. .+... ..+++++.+++.+...+. -+..
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~--------------~~l~~EL~~~~~~L~~~P--Kny~ 109 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESA--------------ALVKAELGFLESCLRVNP--KSYG 109 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------HHHHHHHHHHHHHHHHCT--TCHH
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhh--------------HHHHHHHHHHHHHHHhCC--CCHH
Confidence 3457777777665433345556544333332211 11110 135667788888776552 3677
Q ss_pred HHHHHHHHHHhcC--ChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChh
Q 042756 113 LVAEIIAFLDKQG--QREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQ 190 (425)
Q Consensus 113 ~~~~ll~~~~~~g--~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~ 190 (425)
+|+.--..+.+.| .++++.++++.+.+.. +.+...|+.---.+.+.|.. .++.++.+.++..... -|..
T Consensus 110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d----prNy~AW~~R~~vl~~l~~~--~~eel~~~~~~I~~~p---~N~S 180 (331)
T 3dss_A 110 TWHHRCWLLSRLPEPNWARELELCARFLEAD----ERNFHCWDYRRFVAAQAAVA--PAEELAFTDSLITRNF---SNYS 180 (331)
T ss_dssp HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHCS---CCHH
T ss_pred HHHHHHHHHhccCcccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhCcC--HHHHHHHHHHHHHHCC---CCHH
Confidence 7777777777777 4899999999998762 22234566666666666763 3455555555554331 2445
Q ss_pred HHHHHHHHHHhc--------------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----------CCHHHHHH
Q 042756 191 ALKSMISGLCEM--------------GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRL-----------GLLEDMER 245 (425)
Q Consensus 191 ~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~-----------g~~~~a~~ 245 (425)
.|+-.-..+.+. +.++++++.+.+..... +-|...|+-+--.+.+. +.++++.+
T Consensus 181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~ 259 (331)
T 3dss_A 181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELE 259 (331)
T ss_dssp HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHH
Confidence 787766666654 45788999999888742 23566776554444444 45788999
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHH-----HhcCCHHHHHHHHHHHHh
Q 042756 246 IVNQMESDGTRVDTVCSNMVLSSY-----GDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 246 ~~~~m~~~g~~~~~~~yn~li~~~-----~~~g~~~~A~~l~~~M~~ 287 (425)
.++++.+.. ||. .|+.+-.+. ...|..+++...+.++++
T Consensus 260 ~~~elle~~--pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 260 SCKELQELE--PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHC--TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHhhC--ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 999998763 553 454322222 235666777777777765
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.23 E-value=2.3 Score=32.90 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=82.7
Q ss_pred HHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCC
Q 042756 28 VQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWF 107 (425)
Q Consensus 28 ~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~ 107 (425)
...++.|.++++.++.....+. .+..-||.+|--...+-+-+....+++.+ ..- +
T Consensus 15 K~~ildG~v~qGveii~k~~~s--sni~E~NW~ICNiiD~a~C~y~v~vLd~I---------------------Gki--F 69 (172)
T 1wy6_A 15 KKFLLDGYIDEGVKIVLEITKS--STKSEYNWFICNLLESIDCRYMFQVLDKI---------------------GSY--F 69 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---------------------GGG--S
T ss_pred HHHHHhhhHHHHHHHHHHHcCC--CCccccceeeeecchhhchhHHHHHHHHH---------------------hhh--c
Confidence 5568889999999998888764 67778888888777776555555555443 211 1
Q ss_pred ccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc
Q 042756 108 QWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV 187 (425)
Q Consensus 108 ~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p 187 (425)
|. ...|++..+...|-.+.. ... ..+.-++.+...|..|++++...-+.. . ..|
T Consensus 70 --Di----------s~C~NlKrVi~C~~~~n~-----~se---~vd~ALd~lv~~~KkDqLdki~~~~l~----n--~~~ 123 (172)
T 1wy6_A 70 --DL----------DKCQNLKSVVECGVINNT-----LNE---HVNKALDILVIQGKRDKLEEIGREILK----N--NEV 123 (172)
T ss_dssp --CG----------GGCSCTHHHHHHHHHTTC-----CCH---HHHHHHHHHHHTTCHHHHHHHHHHHC--------CCS
T ss_pred --Cc----------HhhhcHHHHHHHHHHhcc-----hHH---HHHHHHHHHHHhccHhHHHHHHHHHhc----c--CCC
Confidence 21 223444444444433321 111 235556666667775555544443211 1 223
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE 221 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 221 (425)
+....-.+-+||.+.|+..+|.++..+..++|++
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4445556667777777777777777777776653
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=92.45 E-value=0.49 Score=33.71 Aligned_cols=58 Identities=10% Similarity=0.068 Sum_probs=48.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTV-CSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~-~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
....+.+.|++++|.+.|+...+..- .+.. .|..+-..|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34567889999999999999887632 2556 8899999999999999999999998865
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.96 E-value=1.9 Score=38.14 Aligned_cols=127 Identities=6% Similarity=-0.069 Sum_probs=76.1
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHhc--CCccc---HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhc-----CCh
Q 042756 136 ETLSKLGSRERELVLFYCNLIDSFCKH--DSKRG---FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEM-----GQP 205 (425)
Q Consensus 136 ~m~~~~~~~~~~~~~~y~~li~~~~~~--g~~~~---~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~ 205 (425)
+...+..+...+...+..+....+... |++.. +.++...+.+...-.+. ..+...|..+...|.+. |+.
T Consensus 142 ~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~-~~~GsA~~~LG~lY~~vPp~~gGd~ 220 (301)
T 3u64_A 142 KVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPS-YQEGAVWNVLTKFYAAAPESFGGGM 220 (301)
T ss_dssp HHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHHHSCTTTTCCH
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCC-cccCHHHHHHHHHHHhCCCccCCCH
Confidence 333333333444343333333345543 44443 33444444444432211 12356888888888884 888
Q ss_pred hHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHCCCC--cCHHhHHHH
Q 042756 206 HEAENLIEEMRVKGLEP--SGFEYKCIIYGYGRL-GLLEDMERIVNQMESDGTR--VDTVCSNMV 265 (425)
Q Consensus 206 ~~a~~~~~~m~~~g~~p--~~~ty~~ll~~~~~~-g~~~~a~~~~~~m~~~g~~--~~~~~yn~l 265 (425)
++|.+.|++..+. .| +..++...-..+++. |+.+++.+.++........ |+....|.+
T Consensus 221 ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 221 EKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 8888888888874 45 366777777778774 8888888888888877655 665544443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=91.72 E-value=3.2 Score=32.80 Aligned_cols=93 Identities=6% Similarity=-0.036 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHCCCCc--CHHhHHHHHHHHHhcCCHHHHH
Q 042756 205 PHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLG---LLEDMERIVNQMESDGTRV--DTVCSNMVLSSYGDHNELSRMV 279 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g---~~~~a~~~~~~m~~~g~~~--~~~~yn~li~~~~~~g~~~~A~ 279 (425)
+..+.+-|.+....|- ++..+--.+--++++.+ +++++..+|++..+.. .| +...+-.|--+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556666666666554 56666666666777777 6778888888887764 23 3455555666778999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHH
Q 042756 280 LWLQKMKDSGIPFSVRTYNSVL 301 (425)
Q Consensus 280 ~l~~~M~~~g~~pd~~t~~~ll 301 (425)
+.++...+. .|+-.--..+.
T Consensus 92 ~y~~~lL~i--eP~n~QA~~Lk 111 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHhc--CCCCHHHHHHH
Confidence 999998864 67554433333
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.51 E-value=2.9 Score=32.89 Aligned_cols=53 Identities=11% Similarity=0.120 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCC
Q 042756 203 GQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTR 256 (425)
Q Consensus 203 g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~ 256 (425)
++.++|.++|+.+.+..-+- ...|...-.--.++|+++.|.+++..-...+-+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 56666666666665543222 445544455555666666666666666665544
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.42 E-value=3.8 Score=33.28 Aligned_cols=104 Identities=12% Similarity=0.094 Sum_probs=76.9
Q ss_pred HHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 042756 156 IDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYG 235 (425)
Q Consensus 156 i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~ 235 (425)
.....+.|+ ++.+++...+.. +...|..|-....+.|+++-|.+.|.+.. -|..+.-.|.
T Consensus 12 F~LAL~lg~---l~~A~e~a~~l~--------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~---------D~~~L~~Ly~ 71 (177)
T 3mkq_B 12 FDLALEYGN---LDAALDEAKKLN--------DSITWERLIQEALAQGNASLAEMIYQTQH---------SFDKLSFLYL 71 (177)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHC--------CHHHHHHHHHHHHHTTCHHHHHHHHHHTT---------CHHHHHHHHH
T ss_pred HHHHHhcCC---HHHHHHHHHHhC--------CHHHHHHHHHHHHHcCChHHHHHHHHHhC---------CHHHHHHHHH
Confidence 344556788 566666665541 23499999999999999999999999864 3566666777
Q ss_pred cCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 236 RLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 236 ~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
-.|+.+.-.++-+.-..+| -+|.-...+.-.|+++++.++|.+.
T Consensus 72 ~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 7888887777766655554 2777778888899999999988653
No 225
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=90.89 E-value=3.9 Score=33.18 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=59.5
Q ss_pred hhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHH
Q 042756 90 LSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFD 169 (425)
Q Consensus 90 ~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~ 169 (425)
.++.|.++-+.+ + +...|..|-....+.|+++-|++.|.... + |..+.-.|.-.|+.+++.
T Consensus 20 ~l~~A~e~a~~l---~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~------D------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 20 NLDAALDEAKKL---N----DSITWERLIQEALAQGNASLAEMIYQTQH------S------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp CHHHHHHHHHHH---C----CHHHHHHHHHHHHHTTCHHHHHHHHHHTT------C------HHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHHh---C----CHHHHHHHHHHHHHcCChHHHHHHHHHhC------C------HHHHHHHHHHhCCHHHHH
Confidence 455555554443 1 45567778888888888888888888753 1 355666666677743322
Q ss_pred HHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHH
Q 042756 170 DTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 170 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 215 (425)
.. .......+ -+|.-..++.-.|+++++.++|.+.
T Consensus 81 kl---a~iA~~~g--------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KM---QNIAQTRE--------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HH---HHHHHHTT--------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HH---HHHHHHCc--------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 22 22222222 5677777777888888888887543
No 226
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.30 E-value=12 Score=35.33 Aligned_cols=180 Identities=11% Similarity=0.122 Sum_probs=116.9
Q ss_pred CccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhh-cCCCC
Q 042756 107 FQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVN-SSSSV 185 (425)
Q Consensus 107 ~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~ 185 (425)
..++......++..|.+.|+++...+.+.-+.++.+.........-+.++..+......+ ...-...+..... ..+.+
T Consensus 52 ~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d-~~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 52 LASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLD-LNTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTH-HHHHHHHHHCCSSSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHHHHhccch
Confidence 567888999999999999999999888887776655544332222233333333333322 1111112211110 01112
Q ss_pred cc---ChhHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHcCCCHHHHHHHHHHHHH----C
Q 042756 186 YV---KRQALKSMISGLCEMGQPHEAENLIEEMRVK--GLEPS---GFEYKCIIYGYGRLGLLEDMERIVNQMES----D 253 (425)
Q Consensus 186 ~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~ty~~ll~~~~~~g~~~~a~~~~~~m~~----~ 253 (425)
+. ......-|...|-..|++.+|.+++.++... |.-+. ...|...+..|...+++..|..+...... .
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 22 2234466788899999999999999998753 32221 33677788899999999999999998642 2
Q ss_pred CCCcC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 254 GTRVD--TVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 254 g~~~~--~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
...|+ ..-|..++..+...+++.+|.+.|.+.-+
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 22232 45677888888899999999998888743
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.25 E-value=1.8 Score=31.43 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=16.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~ 287 (425)
....|..|..+|.+.|++++|..++++..+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 344555555555555555555555555543
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.55 E-value=2.6 Score=30.62 Aligned_cols=66 Identities=8% Similarity=-0.091 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC
Q 042756 188 KRQALKSMISGLCEMGQPHEAENLIEEMRVKG------LEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESD 253 (425)
Q Consensus 188 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~ 253 (425)
+..-+..|-..+.+.|+++.|...|++..+.- -.+....+..+-.++.+.|+++.|..+++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44567788999999999999999999987641 1245678999999999999999999999998875
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=89.11 E-value=3.6 Score=36.39 Aligned_cols=114 Identities=12% Similarity=-0.029 Sum_probs=83.1
Q ss_pred cChhHHHHHHHHH-Hhc--C------ChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcC-----CCHHHHHHHHHH
Q 042756 187 VKRQALKSMISGL-CEM--G------QPHEAENLIEEMRVKGLEPS---GFEYKCIIYGYGRL-----GLLEDMERIVNQ 249 (425)
Q Consensus 187 p~~~~~~~li~~~-~~~--g------~~~~a~~~~~~m~~~g~~p~---~~ty~~ll~~~~~~-----g~~~~a~~~~~~ 249 (425)
+....|..++.+- ... | ....|..++++..+ +-|+ ...|..+-..|.+. |+.++|++.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 3445777777644 442 3 23456666666655 4566 56899999999995 999999999999
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDH-NELSRMVLWLQKMKDSGIP--FSVRTYNSVLN 302 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~-g~~~~A~~l~~~M~~~g~~--pd~~t~~~ll~ 302 (425)
-.+.+-.-+..++....+.+++. |+.++|.+.+++....... |+....+.+-+
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 88864222478888888999985 9999999999999987666 77655555443
No 230
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.52 E-value=23 Score=38.02 Aligned_cols=204 Identities=12% Similarity=0.104 Sum_probs=109.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhh-cCCCccCHHHHHHHHHHHHhcCChhHH
Q 042756 52 RDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITE-ESWFQWNPKLVAEIIAFLDKQGQREEA 130 (425)
Q Consensus 52 ~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A 130 (425)
.+...-=.+-.++...|++++|...|.+.-..-+........-.. +..+.. ......-+.-|..++..|-+.|.++.|
T Consensus 840 ~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v 918 (1139)
T 4fhn_B 840 SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLRE-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA 918 (1139)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHH-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcc-cccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence 344332234455666799999999998863221111111111111 111211 111223445688899999999999999
Q ss_pred HHHHHHHHHhcCCCchhH-HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHH
Q 042756 131 ETLILETLSKLGSREREL-VLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAE 209 (425)
Q Consensus 131 ~~l~~~m~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 209 (425)
.++-....+......++. ...|..+.+++...|++++ |+..+..+.... .. ......+|...|..|..+.-.
T Consensus 919 i~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~---Ay~aL~~~pd~~--~r--~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 919 LEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA---AHVALMVLSTTP--LK--KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG---GGHHHHHHHHSS--SC--HHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH---HHHHHHhCCCHH--HH--HHHHHHHHHHHHhCCChhhhh
Confidence 887666555443333322 2257788888888898554 445454443332 11 236667777777766654433
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCC--CCcCHHhHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 042756 210 NLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDG--TRVDTVCSNMVLSSYGDHNELSRMVL-WLQKMK 286 (425)
Q Consensus 210 ~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~yn~li~~~~~~g~~~~A~~-l~~~M~ 286 (425)
. +--.|..++..+++..-.+.. +.....-|..|-.-+...|++.+|-. +|+...
T Consensus 992 ~-----------------------lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 992 N-----------------------YSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp H-----------------------HTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred C-----------------------CCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 2 112444555555554332211 01112346777777778888766544 455443
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=88.30 E-value=5.3 Score=28.37 Aligned_cols=65 Identities=6% Similarity=-0.061 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 042756 223 SGFEYKCIIYGYGRLGL---LEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS 288 (425)
Q Consensus 223 ~~~ty~~ll~~~~~~g~---~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~ 288 (425)
|...+..+-.++...++ .++|..+++...+..- -+......+-..+.+.|++++|...|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444444444432322 4556666665554321 13444555555556666666666666666543
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=88.27 E-value=4.3 Score=32.08 Aligned_cols=88 Identities=9% Similarity=0.043 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc--ChhHHHHHHHHHHhcCC
Q 042756 127 REEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV--KRQALKSMISGLCEMGQ 204 (425)
Q Consensus 127 ~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~ 204 (425)
+..+++-|.+..+.+. ++.. +.-.+--++++.......+++...+.+..... .| ....+-.+--+|.+.|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~---~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~---~p~~~rd~lY~LAv~~~kl~~ 86 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKS---TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKE 86 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHH---HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHccCC-CcHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccchHHHHHHHHHHHHHccC
Confidence 4556666666554322 2332 22345556777776666777777777776653 23 23355556666788888
Q ss_pred hhHHHHHHHHHHHcCCCCC
Q 042756 205 PHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 205 ~~~a~~~~~~m~~~g~~p~ 223 (425)
+++|.+.++...+ +.|+
T Consensus 87 Y~~A~~y~~~lL~--ieP~ 103 (152)
T 1pc2_A 87 YEKALKYVRGLLQ--TEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHh--cCCC
Confidence 8888888888887 4563
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.36 E-value=2.7 Score=39.11 Aligned_cols=69 Identities=10% Similarity=-0.022 Sum_probs=48.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 042756 228 KCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMK-----DSGIPFSVRTY 297 (425)
Q Consensus 228 ~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~-----~~g~~pd~~t~ 297 (425)
..++.++...|+.++|...+..+.... +.+...|-.+|.+|.+.|+..+|++.|++.. +-|+.|+..+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566677788888777777665432 3367788888888888888888888887764 35788876653
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.44 E-value=6.3 Score=31.05 Aligned_cols=109 Identities=11% Similarity=0.069 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCCHH----HHHHHHHH---HHcCCCHHHHHHHHHHHHHCCCCc
Q 042756 191 ALKSMISGLCEMGQP------HEAENLIEEMRVKGLEPSGF----EYKCIIYG---YGRLGLLEDMERIVNQMESDGTRV 257 (425)
Q Consensus 191 ~~~~li~~~~~~g~~------~~a~~~~~~m~~~g~~p~~~----ty~~ll~~---~~~~g~~~~a~~~~~~m~~~g~~~ 257 (425)
+|=..+.-.-+.|+. ++..++|++.... ++|+.. .|.-|.-- +-..+|+++|.++|+.+.+. .+-
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~-hKk 92 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN-CKK 92 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-CTT
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-hHH
Confidence 666677777767777 7888888877663 566422 12111111 12337999999999999876 333
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 042756 258 DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLN 302 (425)
Q Consensus 258 ~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~ 302 (425)
-...|-....--.+.|++.+|.+++.+.+..+-+| ...+...|+
T Consensus 93 FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 93 FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 37888888888889999999999999999877555 344444443
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.97 E-value=5.1 Score=37.25 Aligned_cols=70 Identities=10% Similarity=0.009 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCcCHHh
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES-----DGTRVDTVC 261 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~ 261 (425)
+...++.++...|++++|.......... -+-+...|..+|.++.+.|+..+|.+.|+...+ .|+.|+..+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 5667788899999999999998888764 234788999999999999999999999998754 489888654
No 236
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=83.48 E-value=7.4 Score=28.22 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=13.5
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 219 GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 219 g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.+.|+.....+.++||-+.+|+..|.++|+..+
T Consensus 40 DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 40 DLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 237
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.20 E-value=12 Score=35.12 Aligned_cols=101 Identities=12% Similarity=0.118 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh---
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR--- 189 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~--- 189 (425)
+...+...|.+.|+++.|.+.|.++.......... ...+-.+|..+...+++..+.............+.. |+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~k-id~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d--~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAK-IDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD--WERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC--THHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHH-HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC--HHHHHH
Confidence 44558889999999999999999998754443333 446778899999999988888888888777665532 221
Q ss_pred -hHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 190 -QALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 190 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
..|..++ +...+++.+|.+.|-+....
T Consensus 210 lk~~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 210 YKTYYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 1233332 33468899999988887654
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.79 E-value=11 Score=28.66 Aligned_cols=96 Identities=8% Similarity=0.027 Sum_probs=61.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCc--CHHhHHHHHHHH
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLED---MERIVNQMESDGTRV--DTVCSNMVLSSY 269 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~---a~~~~~~m~~~g~~~--~~~~yn~li~~~ 269 (425)
++........+..+.+-|.+....|- |+..+--.+--++++.....+ +..++++....+ .| .....-.|--++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~ 84 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGN 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHH
Confidence 33344444455666666666665554 555555555557777765444 888888877754 13 334444555678
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH
Q 042756 270 GDHNELSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~pd~ 294 (425)
.+.|++++|.+.++.+.+. .|+-
T Consensus 85 yklg~Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 85 YRLKEYEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred HHhhhHHHHHHHHHHHHHh--CCCC
Confidence 8899999999999888764 5644
No 239
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.10 E-value=12 Score=27.09 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=57.5
Q ss_pred HHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 234 YGRLG-LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 234 ~~~~g-~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
|-+.. |.-+..+-++.+....+.|+.....+.+.+|-+.+++..|+++|+-.+.. +.+...+|..+++-+
T Consensus 19 F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 19 FNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 33444 67778999999999999999999999999999999999999999987643 344456798888754
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.95 E-value=35 Score=32.20 Aligned_cols=256 Identities=6% Similarity=0.018 Sum_probs=152.0
Q ss_pred HHHHhhHHHHHHHHHHhHHh------cCCCHHHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCc----hhhhHHHHHH
Q 042756 30 CLTARLTKQGQRFLSSLALA------VTRDSKAASRLISKFVASSPQFIALNALSHLLSPDTTHPR----LSSLAFPLYM 99 (425)
Q Consensus 30 ~l~~~~~~~a~~~~~~m~~~------~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~----~~~~a~~lf~ 99 (425)
.+.++.++.|.+-+..+.+. ..-+......++..|...++++...+.+.-+..+.+.... .+..+...++
T Consensus 26 ~l~~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~ 105 (445)
T 4b4t_P 26 SLAQNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLK 105 (445)
T ss_dssp --CHHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 35578888898877776654 3445777888999999999998887766655544443222 2333333333
Q ss_pred Hhhhc-----------------CCCcc---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHH
Q 042756 100 RITEE-----------------SWFQW---NPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLID 157 (425)
Q Consensus 100 ~m~~~-----------------~~~~~---~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~ 157 (425)
..+.. +.+-. .......|...+-..|++.+|..++.++... +......-...|...+.
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 33211 11111 2234456788888999999999999998653 22222333456777888
Q ss_pred HHHhcCCcccHHHHHHHHHHHhhcCCCCccC--hhHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHH--
Q 042756 158 SFCKHDSKRGFDDTYARLNQLVNSSSSVYVK--RQALKSMISGLCEMGQPHEAENLIEEMRVK-GLEPSGFEYKCIIY-- 232 (425)
Q Consensus 158 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~ty~~ll~-- 232 (425)
.|...+++..+............... ..|+ ..-|..++..+...+++.+|.+.|.+.... .+.-|...+..++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~ 264 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHI 264 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 99999998777777666544332221 2233 346777888888899999999988888653 12223332222211
Q ss_pred --HHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 042756 233 --GYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDH--NELSRMVLWLQKMK 286 (425)
Q Consensus 233 --~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~--g~~~~A~~l~~~M~ 286 (425)
+..-.+....-..+........-.++...|..++.+|... .+++.+.+.|....
T Consensus 265 v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 265 VYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 1111221122222222222222235778899999999764 35677777666543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=81.68 E-value=13 Score=37.78 Aligned_cols=129 Identities=12% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHhcCCCchhHHHHH-HHHHHHHHhcCCcccHHHHHHHHHHHhhc-------CCCC
Q 042756 115 AEIIAFLDKQGQ-REEAETLILETLSKLGSRERELVLFY-CNLIDSFCKHDSKRGFDDTYARLNQLVNS-------SSSV 185 (425)
Q Consensus 115 ~~ll~~~~~~g~-~~~A~~l~~~m~~~~~~~~~~~~~~y-~~li~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~ 185 (425)
..++..+...|+ .+.|..+|+++.+. .+.....| .++|..+.+.++ .-.++..++.+.... -...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~----~p~~~~~~~~~~i~~~~~~~~--~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK----DPIHDIYYKTAMITILDHIET--KELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH----CGGGHHHHHHHHHHHHTTCGG--GHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 345555555566 58899999998875 22211122 233433333332 133445555444321 1000
Q ss_pred ccC--------hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 186 YVK--------RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-GFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 186 ~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
..+ ....+.=.+.+...|+++-|+.+-++... +.|+ -.||-.|..+|.+.|+++.|.-.++.+.
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 000 01122224556778999999999999876 5676 5599999999999999999999999883
No 242
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.36 E-value=21 Score=27.45 Aligned_cols=64 Identities=14% Similarity=0.106 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
|.-+..+-++.+....+.|+.....+.+.+|-+.+++..|+++|+-.+.. +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence 34445555555555555566666666666666666666666665554432 22334445555543
No 243
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.99 E-value=17 Score=26.34 Aligned_cols=86 Identities=14% Similarity=-0.020 Sum_probs=58.2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
+.++|.-+-+-+...+. ...+--+=+..+..+|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666666543 22222233456778999999998877655 589998887754 46788888888888
Q ss_pred HHHhCCCCCCHHHHH
Q 042756 284 KMKDSGIPFSVRTYN 298 (425)
Q Consensus 284 ~M~~~g~~pd~~t~~ 298 (425)
++...| .|....|.
T Consensus 94 ~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 94 RLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHTTCC-CHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 887776 55555544
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=76.91 E-value=22 Score=26.94 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=63.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCcc--ChhHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYV--KRQALKS 194 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~ 194 (425)
++..-.....+..+++-|.+....+. +.... . -.+--++.+........+.+.++.+....+ .| .....-.
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~--~-F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~p~~~Rd~lY~ 79 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKST--Q-FEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFY 79 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHH--H-HHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCC-CcHHH--H-HHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcchHHHHHHH
Confidence 33334444456666677766655433 34332 2 245567778888777888888888887653 13 2335556
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042756 195 MISGLCEMGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 195 li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
+--++.+.|++++|.+.++.+.+ +.|+
T Consensus 80 LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 80 LAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 66788889999999999999888 3563
No 245
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=76.07 E-value=18 Score=25.50 Aligned_cols=27 Identities=15% Similarity=-0.128 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
....+-..+.+.|++++|+..|+++.+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 333333444444444444444444443
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.81 E-value=16 Score=26.40 Aligned_cols=86 Identities=9% Similarity=-0.090 Sum_probs=58.4
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 204 QPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 204 ~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
+.++|.-+-+-+...+. ...+--+=+..+..+|++++|..+.+.+. .||...|-+|-. .+.|..+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 45666666666666543 22222233456778999999988876654 689998887754 47788888888888
Q ss_pred HHHhCCCCCCHHHHH
Q 042756 284 KMKDSGIPFSVRTYN 298 (425)
Q Consensus 284 ~M~~~g~~pd~~t~~ 298 (425)
++..+| .|....|.
T Consensus 93 ~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 93 GLGGSS-DPALADFA 106 (115)
T ss_dssp HHHTCS-SHHHHHHH
T ss_pred HHHhCC-CHHHHHHH
Confidence 888776 55555544
No 247
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=72.89 E-value=25 Score=26.65 Aligned_cols=68 Identities=12% Similarity=0.113 Sum_probs=40.5
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE--LSRMVLWLQKMKDSGIPFSV 294 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~--~~~A~~l~~~M~~~g~~pd~ 294 (425)
..+.+++-|...||.++|.+.++++....+ ....++.++..++-+.++ .+.+.+++..+...|+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 345566677777777777777777653222 234555566666665542 35567777777766654433
No 248
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=70.50 E-value=34 Score=26.27 Aligned_cols=34 Identities=9% Similarity=0.157 Sum_probs=18.0
Q ss_pred CccChhHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 042756 185 VYVKRQALKSMISGLCEMGQPHEAENLIEEMRVK 218 (425)
Q Consensus 185 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 218 (425)
+.|+.....+.+++|.+.+++..|.++|+-.+.+
T Consensus 84 lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 84 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4444455555555555555555555555555443
No 249
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.85 E-value=72 Score=29.77 Aligned_cols=107 Identities=10% Similarity=-0.027 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH---CCCCcCH----Hh
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLE--PSGFEYKCIIYGYGRLGLLEDMERIVNQMES---DGTRVDT----VC 261 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~---~g~~~~~----~~ 261 (425)
++.-+-..|.+.|++++|.+.|.++...-.. --...+-.+|..+...+++..+....+.... .+-.|+. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 7788999999999999999999999875332 3355778888999999999999999988754 2322322 12
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 042756 262 SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNS 299 (425)
Q Consensus 262 yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ 299 (425)
|..+ .+...+++.+|.+.|-+....--..+..++..
T Consensus 213 ~~gl--~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~ 248 (429)
T 4b4t_R 213 YYGI--HCLAVRNFKEAAKLLVDSLATFTSIELTSYES 248 (429)
T ss_dssp HHHH--GGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHH
T ss_pred HHHH--HHHHhChHHHHHHHHHHHhccCCccchhhHHH
Confidence 2222 23457889999999988754322334444433
No 250
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=69.84 E-value=1.1e+02 Score=31.89 Aligned_cols=146 Identities=7% Similarity=0.001 Sum_probs=83.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhc--CCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNS--SSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCI 230 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~l 230 (425)
..++...|+.|+.+-..++.+.+.+.... ...+.||. -+.+...-.+.|.-++-..++++.+... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 45777788888877777777777766543 23355663 3444444556677676667777776643 34445678
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHH---HhCCCCCCHHHHHHHHHHHH
Q 042756 231 IYGYGRLGLLEDMERIVNQMESDG-TRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKM---KDSGIPFSVRTYNSVLNSCS 305 (425)
Q Consensus 231 l~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~yn~li~~~~~~g-~~~~A~~l~~~M---~~~g~~pd~~t~~~ll~~~~ 305 (425)
+.+++...+.+...++++...... +++. .... ++.+.+... -.+.|.+.+.+= ..........++..++.+.+
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888888776543 3332 2222 333443322 134444554431 11222233345566665543
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=69.30 E-value=37 Score=34.50 Aligned_cols=52 Identities=10% Similarity=-0.088 Sum_probs=44.9
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
+-+...|+++-|.++-+..... .| +-.+|-.|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 4466789999999999987764 34 4789999999999999999999999887
No 252
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.98 E-value=52 Score=27.14 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHCCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 238 GLLEDMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
+...++..+|..|..+||-. -+.-|-.....+-..|++.+|.++|+.-++.+-+|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 34667777777777766543 35556666666677777777777777777776667
No 253
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.67 E-value=26 Score=27.51 Aligned_cols=65 Identities=11% Similarity=0.124 Sum_probs=35.3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCC
Q 042756 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE--LSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 227 y~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~--~~~A~~l~~~M~~~g~~p 292 (425)
.+.+|+-|...||.++|.+.++++....+ ....++.++..++-+.++ .+.+.+++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 44556666666666666666666643211 134445555555555322 345566666666655443
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=64.32 E-value=90 Score=28.83 Aligned_cols=172 Identities=10% Similarity=0.021 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhc---CCCCccC
Q 042756 113 LVAEIIAFLDKQGQREEAETLILETLSK-LGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNS---SSSVYVK 188 (425)
Q Consensus 113 ~~~~ll~~~~~~g~~~~A~~l~~~m~~~-~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~p~ 188 (425)
....|...|.+.|+.++..+++.....- ...+..-..-.-..+|+.+....+- .+..+++..+.... .......
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~--~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAG--TGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444888899999999999988876541 1112222233446788888776542 34444444444321 1111111
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--CCCcCHHh
Q 042756 189 RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS-----GFEYKCIIYGYGRLGLLEDMERIVNQMESD--GTRVDTVC 261 (425)
Q Consensus 189 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~ 261 (425)
...=.-+...|...|++.+|..++.++.+.=-..| ..+|-.-+..|...+++..+...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 11122578899999999999999999987522212 235667778899999999999999876532 33233333
Q ss_pred HHHH--H--HHHH-hcCCHHHHHHHHHHHH
Q 042756 262 SNMV--L--SSYG-DHNELSRMVLWLQKMK 286 (425)
Q Consensus 262 yn~l--i--~~~~-~~g~~~~A~~l~~~M~ 286 (425)
-..+ . ..+. ..+++.+|...|-+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 1 1234 6889999988887753
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=62.32 E-value=1.7e+02 Score=31.33 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcC---CCCc------
Q 042756 116 EIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSS---SSVY------ 186 (425)
Q Consensus 116 ~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~---~~~~------ 186 (425)
.++..+.+.+..+.|.++..-. +..+ ..+| .+-.+|...|+ .++|++.|.+....- ....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~-~~~y-l~g~~~L~~ge---~~~A~~~F~kaa~~~~~~~~l~~~~~~~ 885 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDP-IAVY-LKALIYLKSKE---AVKAVRCFKTTSLVLYSHTSQFAVLREF 885 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCH-HHHH-HHHHHHHHTTC---HHHHHHHHHTCCCSCTTCCCSCSSHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCc-HHHH-HHHHHHHhcCC---HHHHHHHHHHHhhhhcccchhhhhhccc
Confidence 3556666677777666644332 1111 2233 34455778888 556666665542110 0000
Q ss_pred -----------cChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC--CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 187 -----------VKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLE--PS--GFEYKCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 187 -----------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p~--~~ty~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.-..=|..++..|-+.+.++.+.++-....+..-. ++ ...|..+.+++...|++++|...+-.+.
T Consensus 886 ~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p 965 (1139)
T 4fhn_B 886 QEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS 965 (1139)
T ss_dssp HHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence 00113667788888888888888877766654211 11 1257888899999999999999988887
Q ss_pred HCCCCcCHHhHHHHHHHHHhcCCHHHH
Q 042756 252 SDGTRVDTVCSNMVLSSYGDHNELSRM 278 (425)
Q Consensus 252 ~~g~~~~~~~yn~li~~~~~~g~~~~A 278 (425)
+...+ ..+...||..+|..|..++-
T Consensus 966 d~~~r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 966 TTPLK--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp HSSSC--HHHHHHHHHHHHHHCCHHHH
T ss_pred CHHHH--HHHHHHHHHHHHhCCChhhh
Confidence 76544 45677788888877765543
No 256
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=59.08 E-value=50 Score=27.25 Aligned_cols=49 Identities=14% Similarity=0.026 Sum_probs=27.7
Q ss_pred hHHHHHHHHhCCCCcccce--eeccccchhcccCcchhHHHHHHHHHHHHHhhccCCCCCCCCee
Q 042756 334 EVSVVKELEDSSVLDEAMK--WDSGETKLDLHGMHLGSAYFIILQWMDEMRNRFNNEKHVIPAEI 396 (425)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~m~~~~~~~~g~~p~~~ 396 (425)
....+..+++.|..++... -.+.+...+..|+ .++.+.+.+ .|..|+..
T Consensus 162 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~-----~ga~~~~~ 212 (241)
T 1k1a_A 162 SLSMVQLLLQHGANVNAQMYSGSSALHSASGRGL---------LPLVRTLVR-----SGADSSLK 212 (241)
T ss_dssp CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTC---------HHHHHHHHH-----TTCCTTCC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC---------HHHHHHHHh-----cCCCCCCc
Confidence 4455667777787766543 2334444455555 344555566 67776654
No 257
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=56.99 E-value=63 Score=24.66 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=48.0
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042756 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 154 ~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
.+--++.+....+...+.+.++.+....+ ..-....+--+--|+.+.|++++|.+..+.+.+ +.|+
T Consensus 45 ~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~ 110 (134)
T 3o48_A 45 NYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 110 (134)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCC
Confidence 34456677777777888888888877654 111234666777888999999999999999887 4664
No 258
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=55.20 E-value=30 Score=27.55 Aligned_cols=52 Identities=8% Similarity=0.006 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 242 DMERIVNQMESDGTRVD-TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
++.++|..|..+||-.. +.-|-.....+-..|++.+|.++|..-++.+-+|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 36677888887776543 55666777777778888888888888888777773
No 259
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=54.96 E-value=41 Score=26.34 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCc-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 242 DMERIVNQMESDGTRV-DTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~-~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
++.++|..|..+||-. -+.-|......+-..|++.+|.++|+.-++.+-+|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3667777777666543 34556666666667777777777777777776666
No 260
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.73 E-value=78 Score=24.76 Aligned_cols=81 Identities=9% Similarity=0.078 Sum_probs=58.6
Q ss_pred HHHHHHHHHhc-------CChHHHHHHHHhhhCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhH
Q 042756 57 ASRLISKFVAS-------SPQFIALNALSHLLSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREE 129 (425)
Q Consensus 57 ~~~ll~~~~~~-------~~~~~a~~~~~~~l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 129 (425)
...++.-|.+. .++..-+.++..... ..+.+.++|..|...+...--+..|...-..+-..|++.+
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~-------~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~ 119 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAE-------YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQH 119 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHT-------TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 44555555443 344555566555543 2455889999999988777788889999999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 042756 130 AETLILETLSKLGSR 144 (425)
Q Consensus 130 A~~l~~~m~~~~~~~ 144 (425)
|.++|+.=.++.-.|
T Consensus 120 A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 120 ASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999877764443
No 261
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=52.52 E-value=79 Score=26.76 Aligned_cols=88 Identities=7% Similarity=-0.119 Sum_probs=51.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHH
Q 042756 196 ISGLCEMGQPHEAENLIEEMRVK--GLEP----SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSY 269 (425)
Q Consensus 196 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~ 269 (425)
|+.+....++++|.++.++.+.. ++++ +...-...++.-.....-.-+..+.+++.. .++...--..+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Confidence 45566677777777777776643 2222 112223333333443344445556666533 34555666677888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 042756 270 GDHNELSRMVLWLQKMK 286 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~ 286 (425)
.+.|+.++|.++|-+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 88888888888877654
No 262
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=51.48 E-value=77 Score=24.73 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL--LEDMERIVNQMESDGTR 256 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~ 256 (425)
..+.+|.-|...|+.++|.+.++++..-... ...++..+..++-+.++ .+.+.+++..+.+.|+-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4566777777778888888888777532111 23455555556655432 45577777777766543
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=50.55 E-value=43 Score=29.10 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHH
Q 042756 119 AFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197 (425)
Q Consensus 119 ~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 197 (425)
....+.|++++|++-...-.+. .|.+...-..|+..+|-.|+++.++.-++.+.++-+. ..|....|..+|.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~----~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~---~~~~a~~yr~lI~ 76 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA----SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHLVK 76 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch---hhHHHHHHHHHHH
Confidence 3455667777777766665543 1212223456777888888866666655555554322 2233344444443
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=49.83 E-value=0.0099 Score=56.37 Aligned_cols=162 Identities=12% Similarity=0.084 Sum_probs=98.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHH
Q 042756 114 VAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALK 193 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 193 (425)
|..|-.+..+.+++.+|.+-|-+. .+++ .|..+|.+..+.|.++++-.-+...++...+ | ..=+
T Consensus 57 Ws~LgkAqL~~~~v~eAIdsyIkA------~Dps---~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke-----~--~IDt 120 (624)
T 3lvg_A 57 WSQLAKAQLQKGMVKEAIDSYIKA------DDPS---SYMEVVQAANTSGNWEELVKYLQMARKKARE-----S--YVET 120 (624)
T ss_dssp SSSHHHHTTTSSSCTTTTTSSCCC------SCCC---SSSHHHHHTTTSSCCTTHHHHHHTTSTTCCS-----T--TTTH
T ss_pred HHHHHHHHHccCchHHHHHHHHhC------CChH---HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-----c--ccHH
Confidence 333777777777777765543221 1221 4677778877888765544433333322111 1 2446
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 194 SMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 194 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
.|+-+|++.+++.+..++.. .||..-...+-+-|...|.++.|.-+|..+.. |.-|-..+++.|
T Consensus 121 eLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~ 184 (624)
T 3lvg_A 121 ELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLG 184 (624)
T ss_dssp HHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCS
T ss_pred HHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHH
Confidence 78888888887766544432 36666666677777777777777666654332 555666677788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHh
Q 042756 274 ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMSMLQD 313 (425)
Q Consensus 274 ~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~~~~~ 313 (425)
++.+|++.-++ .-+..||.-+-.+|...+.+..+
T Consensus 185 ~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLA 218 (624)
T 3lvg_A 185 EYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLA 218 (624)
T ss_dssp GGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTT
T ss_pred HHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHH
Confidence 88777654332 23678999999999887766443
No 265
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=47.77 E-value=1.6e+02 Score=26.68 Aligned_cols=84 Identities=11% Similarity=0.098 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE--LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~--~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
..+.+|.=|...|+.++|.+.++++..-.+. ...++.++..++-+.++ .+.+.+++..+...|+-+.......+.+.
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~v 297 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERI 297 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3566777777788888888888777643322 34556666666665443 35567777777777665544444444444
Q ss_pred HHHHHHH
Q 042756 304 CSTIMSM 310 (425)
Q Consensus 304 ~~~~~~~ 310 (425)
+....++
T Consensus 298 l~~ldDl 304 (358)
T 3eiq_C 298 YNEIPDI 304 (358)
T ss_dssp HHHHHHH
T ss_pred HHhccHh
Confidence 4443333
No 266
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=46.03 E-value=93 Score=23.41 Aligned_cols=65 Identities=15% Similarity=0.249 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCC
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL--LEDMERIVNQMESDGTR 256 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~ 256 (425)
..+.+|.-|...|+.++|.+.++++..-... ...++..+..++-+.++ .+.+.+++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 4456677777777777777777776422111 23344555555555432 35567777777665543
No 267
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=43.85 E-value=43 Score=28.15 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHCCCCcC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 042756 241 EDMERIVNQMESDGTRVD-TVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPF 292 (425)
Q Consensus 241 ~~a~~~~~~m~~~g~~~~-~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~p 292 (425)
+++..+|..|..+||-.. +.-|-..-..+-..|++.+|..+|+.-++.+-+|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 466778888888776543 5667777777778888888888888888777777
No 268
>3cl3_A ORF K13, KS-vflip; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Human herpesvirus 8}
Probab=42.78 E-value=1.3e+02 Score=24.26 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=77.7
Q ss_pred hCCCCCCCchhhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHH----HHHHhcCCCchhHHHHHHHHH
Q 042756 81 LSPDTTHPRLSSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLIL----ETLSKLGSRERELVLFYCNLI 156 (425)
Q Consensus 81 l~~~~~~~~~~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~----~m~~~~~~~~~~~~~~y~~li 156 (425)
++.+..+.+..+.+..+|..+.+++.+.+ ..+...+.+.|+.+-..+++. ++.+.. .+.+...+.|..++
T Consensus 30 LC~d~ip~~~le~i~dlf~~L~~~~~l~~-----~fL~ElL~~I~R~DLl~~~l~~~~~~ve~~l-~~~~~~~s~yr~lL 103 (183)
T 3cl3_A 30 LLNVFIPQPTLAQLIGALRALKEEGRLTF-----PLLAECLFRAGRRDLLRDLLHLDPRFLERHL-AGTMSYFSPYQLTV 103 (183)
T ss_dssp HTTCCCSSCCHHHHHHHHHHHHTTTCSCH-----HHHHHHHHHTTCHHHHTTTTCCCHHHHHHHH-TSSCCSSCHHHHHH
T ss_pred HccCcCCccchHhHHHHHHHHHHcCCCCH-----HHHHHHHHHcChHHHHHHHHccCHHHHHHhh-cccccchhHHHHHH
Confidence 34444445567777799999999987755 447778888899887755542 233321 11222234678888
Q ss_pred HHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 042756 157 DSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKG-LEPSGFEYKCIIYGYG 235 (425)
Q Consensus 157 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~ty~~ll~~~~ 235 (425)
.-.+..=.-+++...--...+..+. ......+.++|.+|.+.| +.|+... .+-..+-
T Consensus 104 ~~Ise~Lt~edl~~lKFl~~~~ipk--------------------~e~~~s~ldlf~~LEk~~~l~~~nl~--~L~~iL~ 161 (183)
T 3cl3_A 104 LHVDGELCARDIRSLIFLSKDTIGS--------------------RSTPQTFLHWVYCMENLDLLGPTDVD--ALMSMLR 161 (183)
T ss_dssp HHHHHHCCHHHHHHHHHHHSSCTTC--------------------SSCCSSHHHHHHHHHTTTSCSTTCCH--HHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHCccccCc--------------------ccccCCHHHHHHHHHHhCCCCCchHH--HHHHHHH
Confidence 8777765533333332222211111 144567899999998887 4443332 2333334
Q ss_pred cCCCHHHHHHH
Q 042756 236 RLGLLEDMERI 246 (425)
Q Consensus 236 ~~g~~~~a~~~ 246 (425)
.-++.+-+.++
T Consensus 162 ~i~R~DL~~~i 172 (183)
T 3cl3_A 162 SLSRVDLQRQV 172 (183)
T ss_dssp HTTCHHHHHHH
T ss_pred HcChHHHHHHH
Confidence 44555444433
No 269
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=42.51 E-value=1.3e+02 Score=23.96 Aligned_cols=117 Identities=9% Similarity=-0.013 Sum_probs=67.8
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHh--cCCCH-------HHHHHHHHHHHhcCChHHHHHHHHhhhCCCCCCCchhhh--HH
Q 042756 27 LVQCLTARLTKQGQRFLSSLALA--VTRDS-------KAASRLISKFVASSPQFIALNALSHLLSPDTTHPRLSSL--AF 95 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~--~~~d~-------~~~~~ll~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~--a~ 95 (425)
+-..+-++.++.|+-+-+.+... ..||. .++..+-+++...+++..|...+.+.+......+..-.. ..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 56667777888888777776555 45552 466778899999999999999998864321111100000 00
Q ss_pred HHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCC
Q 042756 96 PLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGS 143 (425)
Q Consensus 96 ~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~ 143 (425)
..-..-+.......+...---+-.+|.+.|++++|+.+++.+..+...
T Consensus 107 ~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt 154 (167)
T 3ffl_A 107 GNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRT 154 (167)
T ss_dssp ----------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCC
T ss_pred cccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcC
Confidence 000000000001112233233777888999999999998887655443
No 270
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=40.89 E-value=69 Score=22.72 Aligned_cols=58 Identities=14% Similarity=0.220 Sum_probs=35.9
Q ss_pred HHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 97 LYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 97 lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+++.+.+.++++.+ -...+ .........+.|.++++.+..+|.. +|..++.++...|+
T Consensus 26 vld~L~~~~vlt~~--~~e~I-~~~~~~t~~~~ar~Lld~L~~rG~~-------Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 26 LWDVLLSRELFRPH--MIEDI-QRAGSGSRRDQARQLIIDLETRGSQ-------ALPLFISCLEDTGQ 83 (97)
T ss_dssp THHHHHHTTSSCHH--HHHHH-HTSTTCCHHHHHHHHHHHHTTSCTT-------HHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCCCHH--HHHHH-HhccCCChHHHHHHHHHHHHHcChH-------HHHHHHHHHHHcCc
Confidence 56666667755333 22221 1110124688999999988765321 68889999987776
No 271
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=40.07 E-value=3.4e+02 Score=28.14 Aligned_cols=123 Identities=13% Similarity=0.110 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC--CCccChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS--SVYVKRQ--ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 226 (425)
.-..++...|+.|+.+-..++.+.+.+...... .+.||.. +|...+ |.-++-..++++.+.. .+..-
T Consensus 682 lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~~vy~~~~------g~~~~~~~l~~~y~~~---~~~~e 752 (897)
T 2xdt_A 682 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA------QSTEGWDFLYSKYQFS---LSSTE 752 (897)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHHHT------TSHHHHHHHHHHHTTC---CCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhhhEEEEec------CCHHHHHHHHHHHHcc---CCHHH
Confidence 345677888999998878888888877765432 4556643 343332 5555555555555543 24455
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCC-CCcCHHhHHHHHHHHHhc-CCHHHHHHHHHH
Q 042756 227 YKCIIYGYGRLGLLEDMERIVNQMESDG-TRVDTVCSNMVLSSYGDH-NELSRMVLWLQK 284 (425)
Q Consensus 227 y~~ll~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~yn~li~~~~~~-g~~~~A~~l~~~ 284 (425)
-..++.+++...+.+...++++...+.. +++. . ...++.+.+.. --.+.|.+.+.+
T Consensus 753 k~~ll~aL~c~~~~~~l~~~L~~~~~~~~i~~q-d-~~~~~~~v~~n~~g~~~~~~~~~~ 810 (897)
T 2xdt_A 753 KSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQ-E-FPQILTLIGRNPVGYPLAWQFLRK 810 (897)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHCSSSCGG-G-HHHHHHHHHTSTTTHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHhCCCCCcHH-H-HHHHHHHHHcChhhHHHHHHHHHH
Confidence 5788999999999999999999887643 4332 2 23344444432 223455555543
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=39.89 E-value=96 Score=26.90 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=52.1
Q ss_pred HHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDS--GIPFSVRTYNSVLNSCST 306 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~--g~~pd~~t~~~ll~~~~~ 306 (425)
....+.|++++|......-.+.. +-|...=..|+.-+|-.|++++|.+=++-..+. ...|-..+|..+|.+=..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHH
Confidence 44567888888888887766653 347778888889999999999998887776543 234445566666665433
No 273
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=38.59 E-value=1.6e+02 Score=24.14 Aligned_cols=69 Identities=12% Similarity=-0.047 Sum_probs=50.5
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFC 160 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~ 160 (425)
..+.++|..|...+...--+.-|......+-..|++.+|.++|+.=.++.-.|.......|..+..-..
T Consensus 96 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R~~ 164 (202)
T 3esl_A 96 HESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRLR 164 (202)
T ss_dssp HHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHH
Confidence 378889999988887777788899999999999999999999998777655444333333444433333
No 274
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=38.50 E-value=2e+02 Score=26.14 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEM 215 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m 215 (425)
.-..+|.-|...|+.++|.+.++++
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 3444555555555555555555554
No 275
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=38.23 E-value=1.1e+02 Score=21.89 Aligned_cols=57 Identities=5% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCCHHHHHHH
Q 042756 242 DMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM-----KDSGIPFSVRTYNSV 300 (425)
Q Consensus 242 ~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M-----~~~g~~pd~~t~~~l 300 (425)
.|.++.++....|+.|+..+..-++.-|...+. + |.++-.+. -..|..|+..+.+.+
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~F 88 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSF 88 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 466677777777777777777777777766664 2 33332322 235666666555443
No 276
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=37.82 E-value=1.4e+02 Score=23.16 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHH
Q 042756 260 VCSNMVLSSYGDHNELSRMVLWLQ 283 (425)
Q Consensus 260 ~~yn~li~~~~~~g~~~~A~~l~~ 283 (425)
++|.-++..+.+...+-++...|+
T Consensus 157 i~~~Ef~~~~~~~~~~~~~l~~~d 180 (183)
T 1s6c_A 157 VTLDEFLESXQEDDNIMRSLQLFQ 180 (183)
T ss_dssp ECHHHHHHHTTSCCHHHHHHHHHH
T ss_pred EeHHHHHHHHhcChHHHHHHHHhh
Confidence 444444444444444444444443
No 277
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.38 E-value=45 Score=27.55 Aligned_cols=160 Identities=14% Similarity=0.039 Sum_probs=76.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
.+...++.|+.+.+..+++.+.+.+........ ...+.+...+..|+. ++++.+.+....- ..+|..-++. +
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~----~~v~~Ll~~g~~~--~~~~~~g~t~-l 83 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTLP----SVVRLLVTAGASP--MALDRHGQTA-A 83 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT-TSCCHHHHHHHTTCH----HHHHHHHHTTCCT--TCCCTTSCCH-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccc-cCCCHHHHHHHcCCH----HHHHHHHHcCCCc--cccCCCCCCH-H
Confidence 466677889999888888876654332221111 112345555566763 3444444432211 1122222333 4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHH---hHHHHHHHHH
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEP---SGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTV---CSNMVLSSYG 270 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~---~yn~li~~~~ 270 (425)
...+..|+.+-+..+++.....++.+ |..-.+. +...++.|+.+- ++.+.+.|..++.. ...+.+...+
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~g~t~L~~A~ 158 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQET----VQLLLERGADIDAVDIKSGRSPLIHAV 158 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHH----HHHHHHTTCCTTCCCTTTCCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHH----HHHHHHcCCCcccccccCCCcHHHHHH
Confidence 44456777766555555433211122 2222222 333445566544 44445556555432 2334455556
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC
Q 042756 271 DHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 271 ~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
..|+.+-+.- +.+.|..++
T Consensus 159 ~~~~~~~v~~----Ll~~g~~~~ 177 (241)
T 1k1a_A 159 ENNSLSMVQL----LLQHGANVN 177 (241)
T ss_dssp HTTCHHHHHH----HHHTTCCTT
T ss_pred HcCCHHHHHH----HHHcCCCCC
Confidence 6777654433 334565553
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.43 E-value=1.6e+02 Score=23.31 Aligned_cols=55 Identities=5% Similarity=0.035 Sum_probs=46.0
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCc
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRE 145 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~ 145 (425)
.+...++|..|...+...--+..|......+-..|++.+|.++|+.=.++.-.|.
T Consensus 76 ~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 76 CNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 3568889999999887777888899999999999999999999999777655444
No 279
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=36.10 E-value=23 Score=22.71 Aligned_cols=29 Identities=24% Similarity=0.180 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 042756 206 HEAENLIEEMRVKGLEPSGFEYKCIIYGY 234 (425)
Q Consensus 206 ~~a~~~~~~m~~~g~~p~~~ty~~ll~~~ 234 (425)
++|.+.|.+|+...-.+...||...|...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45566666665543333445555555555
No 280
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=36.06 E-value=2.6e+02 Score=25.72 Aligned_cols=142 Identities=11% Similarity=0.111 Sum_probs=82.8
Q ss_pred HHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCC--CCccChh--HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH
Q 042756 151 FYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSS--SVYVKRQ--ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFE 226 (425)
Q Consensus 151 ~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t 226 (425)
.-..++...|..|+.+-..++.+.|.+...... .+.||.. +|...+ + .-++-..++++.+.. .+..-
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~Vy~~~~----~--~~~~~~~l~~~y~~s---~~~~e 269 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLAVFAVGA----Q--STEGWDFLYSKYQFS---LSSTE 269 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHHHHHHHT----T--SHHHHHHHHHHHHHC---CCHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCcceeEEeeee----C--CHHHHHHHHHHHhcC---CCHHH
Confidence 445678888999988877788788877665433 3667642 333322 2 233444555555554 35556
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHH----HHhCCCCCCHHHHHHHH
Q 042756 227 YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQK----MKDSGIPFSVRTYNSVL 301 (425)
Q Consensus 227 y~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g-~~~~A~~l~~~----M~~~g~~pd~~t~~~ll 301 (425)
=..++.+++...+.+...++++......+.+...... ++.+.+... -.+.|.+.+.+ +.+ .+.++...+..++
T Consensus 270 k~~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~-~~~~~~~~~~~~i 347 (419)
T 3rjo_A 270 KSQIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQ-KFELGSSSIAHMV 347 (419)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHH-HHCTTCHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHH-HhCcCchhHHHHH
Confidence 7788999999999999999999887655322223333 344444322 23455555543 221 1223335555665
Q ss_pred HH
Q 042756 302 NS 303 (425)
Q Consensus 302 ~~ 303 (425)
.+
T Consensus 348 ~~ 349 (419)
T 3rjo_A 348 MG 349 (419)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 281
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.02 E-value=1.1e+02 Score=26.98 Aligned_cols=83 Identities=11% Similarity=0.097 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 226 EYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNE--LSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 226 ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~--~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
..+.++.-|...||.++|.+.++++..-.+. ...++.++..++-+.++ .+.+.+++..+.+.|+-+.......+.+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v 246 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI 246 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 3456788888889999999999888753222 35666677777766543 45677888888877765544444444333
Q ss_pred HHHHHH
Q 042756 304 CSTIMS 309 (425)
Q Consensus 304 ~~~~~~ 309 (425)
+....+
T Consensus 247 l~~l~D 252 (307)
T 2zu6_B 247 YNEIPD 252 (307)
T ss_dssp HHHHHH
T ss_pred HHhccH
Confidence 333333
No 282
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.58 E-value=1.6e+02 Score=23.18 Aligned_cols=53 Identities=8% Similarity=-0.049 Sum_probs=41.2
Q ss_pred HcCCCHHHHHHHHHHHHHCCCCc--CHHhHHHHHH-H-----HHhcCCHHHHHHHHHHHHh
Q 042756 235 GRLGLLEDMERIVNQMESDGTRV--DTVCSNMVLS-S-----YGDHNELSRMVLWLQKMKD 287 (425)
Q Consensus 235 ~~~g~~~~a~~~~~~m~~~g~~~--~~~~yn~li~-~-----~~~~g~~~~A~~l~~~M~~ 287 (425)
...|++-+|.++|++.=...-.+ ....|..||. . ..+.|+...|..++.+...
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34499999999999987664445 5677888888 2 2468999999999999854
No 283
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=33.66 E-value=32 Score=28.82 Aligned_cols=86 Identities=12% Similarity=0.138 Sum_probs=60.4
Q ss_pred cHHHHHHHHHHHhhcCCCCcc-----ChhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 042756 167 GFDDTYARLNQLVNSSSSVYV-----KRQALKSMISGLCEMG---------QPHEAENLIEEMRVKGLEP-SGFEYKCII 231 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~ll 231 (425)
.++.+...+.+|..+.-..+| ...-|-.+-.+|++.| +.+.-.++.+...+.|++- =.+.|+++|
T Consensus 146 ~vetAiaml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~~lEPTGGIdl~N~~~I~~i~l~aGv~~viPHIYssII 225 (249)
T 3m0z_A 146 PLETAIALLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDFWLEPTGGIDLENYSEILKIALDAGVSKIIPHIYSSII 225 (249)
T ss_dssp EHHHHHHHHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTCEEEEBSSCCTTTHHHHHHHHHHHTCSCBCCBCCGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhhHHHHHHHHHHcCCCeecccccceec
Confidence 478888888888766533334 2347888999999987 5577777777777777541 126777887
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~ 252 (425)
+--.-.-+.++..+++..+++
T Consensus 226 Dk~TG~TrpedV~~ll~~~K~ 246 (249)
T 3m0z_A 226 DKASGNTRPADVRQLLEMTKQ 246 (249)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 665555678888888877765
No 284
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=32.92 E-value=35 Score=28.94 Aligned_cols=86 Identities=12% Similarity=0.148 Sum_probs=60.6
Q ss_pred cHHHHHHHHHHHhhcCCCCcc-----ChhHHHHHHHHHHhcC---------ChhHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 042756 167 GFDDTYARLNQLVNSSSSVYV-----KRQALKSMISGLCEMG---------QPHEAENLIEEMRVKGLEP-SGFEYKCII 231 (425)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~g~~p-~~~ty~~ll 231 (425)
.++.+...+.+|..+.-..+| ...-|-.+-.+|++.| +.+...++.+...+.|++- =+..|+++|
T Consensus 169 ~vetAiaml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~lEPTGGIdl~Nf~~I~~i~l~aGv~~viPHIYsSII 248 (275)
T 3m6y_A 169 PIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVEQVIPHVYSSII 248 (275)
T ss_dssp EHHHHHHHHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCEEEEBSSCCTTTHHHHHHHHHHTTCSCBCCEECGGGB
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCceECCCCCccHhHHHHHHHHHHHcCCCeecccccceec
Confidence 378888888888766533334 2347888899999876 5677777788888877541 126778887
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q 042756 232 YGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 232 ~~~~~~g~~~~a~~~~~~m~~ 252 (425)
+--.-.-+.++..+++..+++
T Consensus 249 Dk~TG~TrpedV~~ll~~~K~ 269 (275)
T 3m6y_A 249 DKETGNTKVEAVRELLAVVKK 269 (275)
T ss_dssp CTTTCCBCHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHH
Confidence 665555678888888877765
No 285
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.87 E-value=1.7e+02 Score=22.58 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 042756 154 NLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 154 ~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
..--++.++...+...+.+.++.+.....+. -.....--+--++.+.|++++|.++.+.+.+ +.|+
T Consensus 44 ~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~--~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~ 109 (144)
T 1y8m_A 44 NYAWGLIKSTDVNDERLGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 109 (144)
T ss_dssp HHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS--THHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc--chhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCC
Confidence 3455677777777778888888887764421 1223555566778888888888888888887 4664
No 286
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.67 E-value=2.6e+02 Score=24.66 Aligned_cols=66 Identities=17% Similarity=0.245 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCc
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL--LEDMERIVNQMESDGTRV 257 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~ 257 (425)
-.+.+|.-|...|+.++|.+.++++..-...| ..++..+..++-+.++ .+...+++..+.+.|+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 56789999999999999999999996422222 4466666667776543 566888898888776543
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=32.53 E-value=2.1e+02 Score=25.26 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIY 232 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~ 232 (425)
.+.+...+..|+. ++++.+.+....- -..|..-++.| ...+..|+.+-+ +.+.+.|..++...-.+.+.
T Consensus 21 ~t~L~~Aa~~g~~----~~v~~Ll~~g~~~--~~~d~~g~t~L-~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~ 89 (364)
T 3ljn_A 21 MEKIHVAARKGQT----DEVRRLIETGVSP--TIQNRFGCTAL-HLACKFGCVDTA----KYLASVGEVHSLWHGQKPIH 89 (364)
T ss_dssp HHHHHHHHHHTCH----HHHHHHHHTTCCT--TCCCTTCCCHH-HHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHH
T ss_pred CCHHHHHHHcCCH----HHHHHHHHcCCCc--cccCCCCCcHH-HHHHHcCCHHHH----HHHHHCCCCccccCCCCHHH
Confidence 3455555667773 2333333322111 11222233344 444556666444 44444454444422333455
Q ss_pred HHHcCCCHHHHHHHHHHHHHCCCCcCH
Q 042756 233 GYGRLGLLEDMERIVNQMESDGTRVDT 259 (425)
Q Consensus 233 ~~~~~g~~~~a~~~~~~m~~~g~~~~~ 259 (425)
..+..|+.+-+..+++.-.+.|..++.
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 566778888888888876665654443
No 288
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.22 E-value=1.4e+02 Score=21.54 Aligned_cols=60 Identities=12% Similarity=0.111 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
...++|.-+-+-+...|- ...+--+=+..+.+.|++++|..+.+.+- .||...|-+|-..
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~ 80 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY 80 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH
Confidence 357888888888887653 33333334467789999999998876654 8999999888654
No 289
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=31.78 E-value=2.7e+02 Score=24.62 Aligned_cols=83 Identities=13% Similarity=0.096 Sum_probs=48.3
Q ss_pred HHHHHHHhhHHHHHHHHHHhHHhcCCCHHHHHHHHHHHHhcCChHHHHHHHHhhh---CCCCCCCchhhhHHHHHHHhhh
Q 042756 27 LVQCLTARLTKQGQRFLSSLALAVTRDSKAASRLISKFVASSPQFIALNALSHLL---SPDTTHPRLSSLAFPLYMRITE 103 (425)
Q Consensus 27 ~~~~l~~~~~~~a~~~~~~m~~~~~~d~~~~~~ll~~~~~~~~~~~a~~~~~~~l---~~~~~~~~~~~~a~~lf~~m~~ 103 (425)
.-..+-.|.+-+|.+.++. +..-|.+.++++.|.+++-+.- .+.+....-.|.|.-+.+-..+
T Consensus 20 l~~~I~~G~yYEAhQ~~Rt--------------l~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~ 85 (312)
T 2wpv_A 20 FENKIKAGDYYEAHQTLRT--------------IANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDL 85 (312)
T ss_dssp HHHHHHHTCHHHHHHHHHH--------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHH
Confidence 3455666677777766655 5666778888888888876641 1112112224445445555555
Q ss_pred cCCCccCHHHHHHHHHHHHhc
Q 042756 104 ESWFQWNPKLVAEIIAFLDKQ 124 (425)
Q Consensus 104 ~~~~~~~~~~~~~ll~~~~~~ 124 (425)
.+ ..++......++..+...
T Consensus 86 ~~-~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 86 AE-VKVDDISVARLVRLIAEL 105 (312)
T ss_dssp TT-CCCSHHHHHHHHHHHTTC
T ss_pred cC-CCCCHHHHHHHHHHHHHC
Confidence 44 566766666666665553
No 290
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=31.27 E-value=70 Score=28.81 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=11.2
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHH
Q 042756 229 CIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 229 ~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
.+++-|...||+++|.+.++++.
T Consensus 16 ~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 16 AIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC
Confidence 34444444555555555554443
No 291
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.84 E-value=1.3e+02 Score=20.14 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
+.+.|++.+..- -.++..+...+ ..-.+.++++.+.+.+...+..|..-.++.+.+.|-
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 445555544333 33344444332 333455555555555444455555555555555544
No 292
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=29.01 E-value=0.95 Score=43.20 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=86.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccCh
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKR 189 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~ 189 (425)
|+..|..+|.+..+.|.+++-...+.-.++....+.-+ +.|+-+|++.++..++++.+ ..|+.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID-----teLi~ayAk~~rL~elEefl------------~~~N~ 144 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE-----TELIFALAKTNRLAELEEFI------------NGPNN 144 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT-----HHHHHHHHTSCSSSTTTSTT------------SCCSS
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH-----HHHHHHHHhhCcHHHHHHHH------------cCCCc
Confidence 34456679999999999999888655444443323322 67999999999865433321 22444
Q ss_pred hHHHHHHHHHHhcCChhHHHHHHHHHHHc--------------------CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 042756 190 QALKSMISGLCEMGQPHEAENLIEEMRVK--------------------GLEPSGFEYKCIIYGYGRLGLLEDMERIVNQ 249 (425)
Q Consensus 190 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~ 249 (425)
.-...+-+-|...|.++.|.-+|..+... ...-+..||.-+-.+|...+++..|.-.--.
T Consensus 145 A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLn 224 (624)
T 3lvg_A 145 AHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLH 224 (624)
T ss_dssp SCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcch
Confidence 44455555555566555555555444311 1123556777777777777776665444433
Q ss_pred HHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 042756 250 MESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKM 285 (425)
Q Consensus 250 m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M 285 (425)
+.-. || .-..++.-|-..|.+++-+.+++.-
T Consensus 225 iIvh---ad--eL~elv~~YE~~G~f~ELIsLlEag 255 (624)
T 3lvg_A 225 IVVH---AD--ELEELINYYQDRGYFEELITMLEAA 255 (624)
T ss_dssp HHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHH
T ss_pred hccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3321 11 1223344455555555555555543
No 293
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=28.77 E-value=79 Score=25.81 Aligned_cols=144 Identities=13% Similarity=0.076 Sum_probs=67.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
.+...++.|+++....+++.-.......... -.+.+...+..|+. +.++.+.+....- -..|..-++.+.
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~----g~t~L~~A~~~g~~----~~v~~Ll~~g~~~--~~~~~~g~t~L~ 78 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQD----SRTALHWACSAGHT----EIVEFLLQLGVPV--NDKDDAGWSPLH 78 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTT----SCCHHHHHHHHTCH----HHHHHHHHTTCCS--CCCCTTSCCHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCC----CCCHHHHHHHcCcH----HHHHHHHHhCCCC--CCcCCCCCCHHH
Confidence 4777788899998888877632211111111 12344455566763 3444444432111 112323334443
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh--HHHHHHHHHhc
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSGFE--YKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVC--SNMVLSSYGDH 272 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t--y~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--yn~li~~~~~~ 272 (425)
. .+..|+.+ +++.+.+.|..++... -.+.+...++.|+.+-+..+ .+.|..++... -.+.+...+..
T Consensus 79 ~-A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t~L~~A~~~ 149 (231)
T 3aji_A 79 I-AASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML----LEGGANPDAKDHYDATAMHRAAAK 149 (231)
T ss_dssp H-HHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred H-HHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH----HHcCCCCCCcCCCCCcHHHHHHHc
Confidence 3 34456654 4445555665543221 12234444566776644444 44555444221 12334444556
Q ss_pred CCHHHHH
Q 042756 273 NELSRMV 279 (425)
Q Consensus 273 g~~~~A~ 279 (425)
|+.+-+.
T Consensus 150 ~~~~~v~ 156 (231)
T 3aji_A 150 GNLKMVH 156 (231)
T ss_dssp TCHHHHH
T ss_pred CCHHHHH
Confidence 6665443
No 294
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=28.52 E-value=2.2e+02 Score=22.52 Aligned_cols=166 Identities=9% Similarity=-0.013 Sum_probs=83.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHH
Q 042756 118 IAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMIS 197 (425)
Q Consensus 118 l~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 197 (425)
|...++.|+++....++.. +. ...+.. .-.+.+...+..|+.+.-.++.+.+.+....- -.+|..-++.|..
T Consensus 10 l~~Aa~~g~~~~~~~l~~~----~~-~~~~~~-~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv--n~~d~~g~TpLh~ 81 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEK----GY-EDKESV-LKSNILYDVLRNNNDEARYKISMFLINKGADI--KSRTKEGTTLFFP 81 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHH----SS-SCHHHH-HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS--SCCCTTCCCTHHH
T ss_pred HHHHHHcCCHHHHHHHHhc----Cc-cccccc-CCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC--CCCCCCCCcHHHH
Confidence 3445677998886666543 22 122211 12345556666676332234455554432221 1133334445544
Q ss_pred HHHh-cCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHcCCCH-HHHHHHHHHHHH-CCCCcCHHhH--HHHHHHH
Q 042756 198 GLCE-MGQPHEAENLIEEMRVKGLEPSGFE---YKCIIYGYGRLGLL-EDMERIVNQMES-DGTRVDTVCS--NMVLSSY 269 (425)
Q Consensus 198 ~~~~-~g~~~~a~~~~~~m~~~g~~p~~~t---y~~ll~~~~~~g~~-~~a~~~~~~m~~-~g~~~~~~~y--n~li~~~ 269 (425)
++.. ..+.....++.+.+.+.|..+|... .++.+...+..|.. ..-..+++.+.+ .|..++.... .+-+...
T Consensus 82 a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A 161 (186)
T 3t8k_A 82 LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFV 161 (186)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHH
Confidence 4433 2345556788888888887765442 21333333334432 445667777777 7876653221 1234444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC
Q 042756 270 GDHNELSRMVLWLQKMKDSGIP 291 (425)
Q Consensus 270 ~~~g~~~~A~~l~~~M~~~g~~ 291 (425)
++.|..+-+.-+.+.+.+.+++
T Consensus 162 ~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 162 KRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HTTTCHHHHHHHHHHHHHHTCC
T ss_pred HHcCCHHHHHHHHHHHHHHhcc
Confidence 5667765444444444545544
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=28.52 E-value=1.4e+02 Score=23.35 Aligned_cols=72 Identities=8% Similarity=0.092 Sum_probs=45.8
Q ss_pred hhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHh--cCCCchhHHHHHHHHHHHHHhcCCccc
Q 042756 92 SLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSK--LGSRERELVLFYCNLIDSFCKHDSKRG 167 (425)
Q Consensus 92 ~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~--~~~~~~~~~~~y~~li~~~~~~g~~~~ 167 (425)
+.+++-+.+..+..++.++. -=..++..+.+.+..-.|.++++.+.+. +...+.. .+|++ ++.+...|-...
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~a--TVYRt-L~~L~e~Glv~~ 87 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIA--TVYRT-LNLLEEAEMVTS 87 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHH--HHHHH-HHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHH--HHHHH-HHHHHHCCCEEE
Confidence 44454455443333366666 3344777888877888899999999876 5444444 35654 567777776543
No 296
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=28.31 E-value=30 Score=22.18 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=17.0
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCH
Q 042756 202 MGQPHEAENLIEEMRVKG-LEPSG 224 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g-~~p~~ 224 (425)
.-+++.|...|.++...| |+|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 448889999999988765 55543
No 297
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.28 E-value=1.3e+02 Score=19.98 Aligned_cols=63 Identities=13% Similarity=0.096 Sum_probs=44.2
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 212 IEEMRVKGLEPSGFEYKCIIYGYGRLG-LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 212 ~~~m~~~g~~p~~~ty~~ll~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
.+.|.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-.-.+..+...|-+
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 345777888887655 45566676664 5667888999988876656666766677777777654
No 298
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=27.69 E-value=1.2e+02 Score=24.04 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=13.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHH
Q 042756 228 KCIIYGYGRLGLLEDMERIVNQME 251 (425)
Q Consensus 228 ~~ll~~~~~~g~~~~a~~~~~~m~ 251 (425)
..+|+-|...||.++|...++++.
T Consensus 14 ~~ii~EYf~~~D~~Ea~~~l~eL~ 37 (165)
T 2rg8_A 14 TPIIQEYFEHGDTNEVAEMLRDLN 37 (165)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 344555555555555555555554
No 299
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=27.40 E-value=2.7e+02 Score=23.24 Aligned_cols=54 Identities=9% Similarity=0.078 Sum_probs=45.0
Q ss_pred hhhHHHHHHHhhhcCCCccCHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Q 042756 91 SSLAFPLYMRITEESWFQWNPKLVAEIIAFLDKQGQREEAETLILETLSKLGSR 144 (425)
Q Consensus 91 ~~~a~~lf~~m~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~ 144 (425)
.+...++|..|...++..--+..|...-..+-..|++.+|.++|+.=.++.-.|
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 467889999999988777778889999999999999999999999877664443
No 300
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=27.05 E-value=2.7e+02 Score=23.08 Aligned_cols=191 Identities=10% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccC-hhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH--H
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVK-RQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYK--C 229 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~--~ 229 (425)
.+.+...++.|+ .+.++.+...+..+... ...-.+.+...+..|+. ++++.+.+.|..|+..... +
T Consensus 6 ~~~L~~A~~~g~-------~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~----~~v~~Ll~~g~~~~~~~~~g~t 74 (285)
T 1wdy_A 6 NHLLIKAVQNED-------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE----DIVELLLRHGADPVLRKKNGAT 74 (285)
T ss_dssp HHHHHHHHHTTC-------HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH----HHHHHHHHTTCCTTCCCTTCCC
T ss_pred chHHHHHHHcCC-------HHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCCcccCCCCCC
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------CHHHHH
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSN--MVLSSYGDHNELSRMVLWLQKMKDSGIPF---------SVRTYN 298 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn--~li~~~~~~g~~~~A~~l~~~M~~~g~~p---------d~~t~~ 298 (425)
.+...+..|+ .++++.+.+.|..++..... +.+...+..|+.+-+..+++.-....... +..-.+
T Consensus 75 ~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 75 PFLLAAIAGS----VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp HHHHHHHHTC----HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred HHHHHHHcCC----HHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc
Q ss_pred HHHHHHHHHHHHHHhhccCCchhhHHHHHhhcchhhHHHHHHHHhC-CCCccc--ceeeccccchhcccCcchhHHHHHH
Q 042756 299 SVLNSCSTIMSMLQDLNSNDFPLSILELTEVLNEEEVSVVKELEDS-SVLDEA--MKWDSGETKLDLHGMHLGSAYFIIL 375 (425)
Q Consensus 299 ~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~ 375 (425)
.|..++.. +....+..+++. +..++. ..-.+.+...+..++.... .
T Consensus 151 ~L~~A~~~--------------------------~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-----~ 199 (285)
T 1wdy_A 151 ALMDAAEK--------------------------GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV-----E 199 (285)
T ss_dssp HHHHHHHH--------------------------TCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTH-----H
T ss_pred HHHHHHHc--------------------------CCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchH-----H
Q ss_pred HHHHHHHhhccCCCCCCCC
Q 042756 376 QWMDEMRNRFNNEKHVIPA 394 (425)
Q Consensus 376 ~~~~~m~~~~~~~~g~~p~ 394 (425)
++.+.+.+ .|..||
T Consensus 200 ~i~~~Ll~-----~g~~~~ 213 (285)
T 1wdy_A 200 AITHLLLD-----HGADVN 213 (285)
T ss_dssp HHHHHHHH-----TTCCSS
T ss_pred HHHHHHHH-----cCCCCC
No 301
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=26.08 E-value=1.8e+02 Score=20.77 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCC
Q 042756 110 NPKLVAEIIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDS 164 (425)
Q Consensus 110 ~~~~~~~ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~ 164 (425)
+......+.......|..+.|..+++.+.+.. .+. +|..++.|+-+.|.
T Consensus 42 ~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r~~---~~g---Wf~~fl~AL~~~g~ 90 (100)
T 2lwd_A 42 INQECEEILQICSTKGMMAGAEKLVECLLRSD---KEN---WPKTLKLALEKERN 90 (100)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC---CTH---HHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHccChHHHHHHHHHHHHhcC---cCC---cHHHHHHHHHHcCC
Confidence 45556667788888999999999999987631 222 78999999998886
No 302
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=25.52 E-value=1.4e+02 Score=21.55 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=43.0
Q ss_pred CCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 042756 238 GLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNS 303 (425)
Q Consensus 238 g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~ 303 (425)
...++|.-+-+-+...|- ...+--+=+..+.+.|++++|..+.+.+ +.||...|-+|-..
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce~ 79 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCEW 79 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHHH
Confidence 357888888888887653 3333333346778999999998876554 48999999888654
No 303
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=25.12 E-value=81 Score=23.76 Aligned_cols=146 Identities=9% Similarity=-0.063 Sum_probs=63.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHH
Q 042756 117 IIAFLDKQGQREEAETLILETLSKLGSRERELVLFYCNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMI 196 (425)
Q Consensus 117 ll~~~~~~g~~~~A~~l~~~m~~~~~~~~~~~~~~y~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 196 (425)
.+...++.|+.+.+..+++. ... .....+ . .-.+.+.. +..|+. +..+.+.+....- -.+|..-++.+.
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~-~~~-~~~~~~-~-~g~t~L~~-~~~~~~----~~v~~Ll~~g~~~--~~~~~~g~t~L~ 73 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHR-ELV-HPDALN-R-FGKTALQV-MMFGST----AIALELLKQGASP--NVQDTSGTSPVH 73 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCC-CTTCCC-T-TSCCHHHH-SCTTCH----HHHHHHHHTTCCT--TCCCTTSCCHHH
T ss_pred HHHHHHHhCCHHHHHHHHHh-hCc-CccccC-C-CCCcHHHH-HHcCCH----HHHHHHHHCCCCC--CCcCCCCCCHHH
Confidence 45566777888888887776 210 111111 0 01234444 666763 3344443332111 112222333443
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcC
Q 042756 197 SGLCEMGQPHEAENLIEEMRVKGLEPSG---FEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHN 273 (425)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g 273 (425)
.+ +..|+.+- .+.+.+.|..++. .-.+ .+...++.|+.+-+..+++. ..... .|..-.+ -+...+..|
T Consensus 74 ~A-~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~-~~~~~-~~~~g~t-~l~~A~~~~ 144 (156)
T 1bd8_A 74 DA-ARTGFLDT----LKVLVEHGADVNVPDGTGAL-PIHLAVQEGHTAVVSFLAAE-SDLHR-RDARGLT-PLELALQRG 144 (156)
T ss_dssp HH-HHTTCHHH----HHHHHHTTCCSCCCCTTSCC-HHHHHHHHTCHHHHHHHHTT-SCTTC-CCTTSCC-HHHHHHHSC
T ss_pred HH-HHcCcHHH----HHHHHHcCCCCCCcCCCCCc-HHHHHHHhChHHHHHHHHhc-cCCCC-cCCCCCC-HHHHHHHcC
Confidence 33 44566543 3344455544432 2222 33344556676666555544 21111 1222222 333444566
Q ss_pred CHHHHHHHH
Q 042756 274 ELSRMVLWL 282 (425)
Q Consensus 274 ~~~~A~~l~ 282 (425)
+.+-+.-++
T Consensus 145 ~~~~v~~Ll 153 (156)
T 1bd8_A 145 AQDLVDILQ 153 (156)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 665444443
No 304
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.84 E-value=3.9e+02 Score=24.15 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHCCCCcCHHhHHHHHHH
Q 042756 191 ALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSGFEYKCIIYGYGRLGL--LEDMERIVNQMESDGTRVDTVCSNMVLSS 268 (425)
Q Consensus 191 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ty~~ll~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~yn~li~~ 268 (425)
..+.+|.-|...|+.++|.+.++++..-...+ ..++..+..++-+.++ .+...+++..+.+.|+-+ =+.+..|
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhh-e~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls----~~q~~~G 293 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT----IDQMKRG 293 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHH-HHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC----HHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcchH-HHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC----HHHHHHH
Confidence 56889999999999999999999996432222 4456666667766543 466888888888876543 3444555
Q ss_pred HH
Q 042756 269 YG 270 (425)
Q Consensus 269 ~~ 270 (425)
+.
T Consensus 294 f~ 295 (358)
T 3eiq_C 294 YE 295 (358)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 305
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=24.84 E-value=2.8e+02 Score=22.54 Aligned_cols=25 Identities=12% Similarity=-0.052 Sum_probs=11.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 042756 114 VAEIIAFLDKQGQREEAETLILETL 138 (425)
Q Consensus 114 ~~~ll~~~~~~g~~~~A~~l~~~m~ 138 (425)
..++|.+..+.+++.+-..+=+.+.
T Consensus 109 vsslIyAa~R~~elpEL~~ir~~l~ 133 (193)
T 3ggy_A 109 IRSLIYAILFVDEVKELSQLKDLMA 133 (193)
T ss_dssp HHHHHHHGGGCTTCTTHHHHHHHHH
T ss_pred HHHHHHhcccCCCChHHHHHHHHHH
Confidence 4445555554444444444333333
No 306
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.65 E-value=62 Score=20.67 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=14.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCC
Q 042756 202 MGQPHEAENLIEEMRVKGLEPS 223 (425)
Q Consensus 202 ~g~~~~a~~~~~~m~~~g~~p~ 223 (425)
.|+++.|+..+-+|...+..|+
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSCC
T ss_pred CCCHHHHHHHHHcCcCCCCCCC
Confidence 4677777777777766555554
No 307
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=22.80 E-value=2.3e+02 Score=21.72 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=39.2
Q ss_pred HHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Q 042756 246 IVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIM 308 (425)
Q Consensus 246 ~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~ 308 (425)
+-+.+.+.|++++ .-=-.++..+...+..-.|.++++.+.+.+-..+..|.--.|+.+...|
T Consensus 14 ~~~~l~~~g~r~T-~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 14 LRMSIKKNGLKNS-KQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHCC--CH-HHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3345677888754 3445566666666667789999999987765566666555555555433
No 308
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.74 E-value=3.6e+02 Score=25.17 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=27.9
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 042756 265 VLSSY---GDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSC 304 (425)
Q Consensus 265 li~~~---~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~ 304 (425)
+|+++ .+.++.+.|+.++.+|.+.|..|....=..+..+.
T Consensus 258 ~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~ 300 (447)
T 3pvs_A 258 LISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIAS 300 (447)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44444 35678999999999999999888655444444443
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.38 E-value=1.4e+02 Score=24.20 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH---HHHHH
Q 042756 153 CNLIDSFCKHDSKRGFDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRVKGLEPSG---FEYKC 229 (425)
Q Consensus 153 ~~li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~ty~~ 229 (425)
+..+...++.|+. +.+...+..-.... ..+|..-++.|. ..+..|+.+ +++.+.+.|..++. .-++.
T Consensus 7 ~~~l~~A~~~g~~---~~v~~ll~~~~~~~--~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~ 76 (231)
T 3aji_A 7 NIMICNLAYSGKL---DELKERILADKSLA--TRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSP 76 (231)
T ss_dssp SSHHHHHHHHTCH---HHHHHHHHHCGGGG--GCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCH
T ss_pred cchHHHHHHhCCH---HHHHHHHHhchhhh--hcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCH
Confidence 5567777888883 33333333221111 112333344444 445566654 34444455654432 22233
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHh--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 042756 230 IIYGYGRLGLLEDMERIVNQMESDGTRVDTVC--SNMVLSSYGDHNELSRMVLWLQKMKDSGIPFS 293 (425)
Q Consensus 230 ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd 293 (425)
+ ...+..|+.+ +++.+.+.|..++... ..+.+...+..|+.+-+.. +.+.|..|+
T Consensus 77 L-~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~----Ll~~g~~~~ 133 (231)
T 3aji_A 77 L-HIAASAGXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM----LLEGGANPD 133 (231)
T ss_dssp H-HHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH----HHHTTCCTT
T ss_pred H-HHHHHcCHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHcCCCCC
Confidence 3 3344556654 3444445565443221 1233444455666654433 334455443
No 310
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.68 E-value=2.7e+02 Score=21.15 Aligned_cols=55 Identities=7% Similarity=0.003 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 042756 239 LLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVR 295 (425)
Q Consensus 239 ~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~ 295 (425)
++..+..+++++.+.+-.-.....--|--|+.+.|++++|.+..+.+.+. .|+-.
T Consensus 58 d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~ 112 (134)
T 3o48_A 58 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCH
Confidence 35567777777666542223455556666777888888888887777653 56543
No 311
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.67 E-value=2.3e+02 Score=21.19 Aligned_cols=60 Identities=12% Similarity=0.085 Sum_probs=40.1
Q ss_pred HHHHCCCCcCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 249 QMESDGTRVDTVCSNMVLSSYGDHN-ELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 249 ~m~~~g~~~~~~~yn~li~~~~~~g-~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
.+.+.|++++. .=-.++..+...+ ..-.|.++++.+.+.+-..+..|.---|+.+...|-
T Consensus 8 ~l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 46678887654 3345566666665 667899999999888766677666666666655444
No 312
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.13 E-value=2.3e+02 Score=21.56 Aligned_cols=61 Identities=11% Similarity=0.030 Sum_probs=39.9
Q ss_pred HHHHHCCCCcCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Q 042756 248 NQMESDGTRVDTVCSNMVLSSYGDHNELSRMVLWLQKMKDSGIPFSVRTYNSVLNSCSTIMS 309 (425)
Q Consensus 248 ~~m~~~g~~~~~~~yn~li~~~~~~g~~~~A~~l~~~M~~~g~~pd~~t~~~ll~~~~~~~~ 309 (425)
+.+.+.|++++. .=-.++..+...+..-.|.++++.+.+.+-..+..|.--.|+.+...|-
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 456778887653 3345556666666667899999999887655666665555565555443
No 313
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=20.98 E-value=3.1e+02 Score=21.67 Aligned_cols=63 Identities=11% Similarity=-0.028 Sum_probs=39.0
Q ss_pred HHHHHHhcCCcccHHHHHHHHHHHhhcCCCC-ccCh--hHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 042756 155 LIDSFCKHDSKRGFDDTYARLNQLVNSSSSV-YVKR--QALKSMISGLCEMGQPHEAENLIEEMRV 217 (425)
Q Consensus 155 li~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 217 (425)
-+..+...+.++.+.-..+++..+....... .|.. .++..+-.++...|++..|...|++..+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3444555555555555555555554433222 2221 3666677888889999999999998654
No 314
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=20.91 E-value=2.3e+02 Score=20.75 Aligned_cols=88 Identities=16% Similarity=0.087 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhcCCCCccChhHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 042756 168 FDDTYARLNQLVNSSSSVYVKRQALKSMISGLCEMGQPHEAENLIEEMRV-KGLEPSGFEYKCIIYGYGRLGLLEDMERI 246 (425)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~ty~~ll~~~~~~g~~~~a~~~ 246 (425)
..+++..+.+.... .+|......++..+-.. +|-|+++.++..+ .|+ ++.++...+....+.|-+++. +.
T Consensus 4 ~~~al~~L~e~~~~----~~~~~~~dg~i~~fe~t--~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 4 LARAVERLKAALER----PKDEFIRDSAIQRFEFT--FELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp HHHHHHHHHHHHSS----CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 45566666665432 23555555666555432 3445555554443 466 357778888888888877665 45
Q ss_pred HHHHHH-CCCCcCHHhHHHHH
Q 042756 247 VNQMES-DGTRVDTVCSNMVL 266 (425)
Q Consensus 247 ~~~m~~-~g~~~~~~~yn~li 266 (425)
|..|.. ++ ..+++|+...
T Consensus 75 w~~m~~~RN--~~vH~Y~~~~ 93 (119)
T 1wty_A 75 WLEMLELRN--LTNHTYDEAL 93 (119)
T ss_dssp HHHHHHHHH--HGGGTTSHHH
T ss_pred HHHHHHHhh--HhcccccHHH
Confidence 555553 32 2455665544
No 315
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.84 E-value=1.4e+02 Score=22.06 Aligned_cols=41 Identities=7% Similarity=-0.121 Sum_probs=17.7
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 042756 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMES 252 (425)
Q Consensus 212 ~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~ 252 (425)
|+.+....+.|+...--.-|..+...++++.|.+++-.+..
T Consensus 49 fdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 49 REQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333333433333333333334444555555555554444
No 316
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.44 E-value=2.8e+02 Score=20.97 Aligned_cols=63 Identities=10% Similarity=0.063 Sum_probs=40.0
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCcCHHhHHHHHHHHHhcCCH
Q 042756 212 IEEMRVKGLEPSGFEYKCIIYGYGRLGLLEDMERIVNQMESDGTRVDTVCSNMVLSSYGDHNEL 275 (425)
Q Consensus 212 ~~~m~~~g~~p~~~ty~~ll~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~yn~li~~~~~~g~~ 275 (425)
-+.+++.|++++..=. .++..+...+..-.|.++++.+.+.+...+..|----++.+...|-+
T Consensus 10 ~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 10 LETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3456777887765533 33444455666777889999988776555655555555666666654
Done!