BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042757
(271 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LAL0|SCO12_ARATH Protein SCO1 homolog 2, mitochondrial OS=Arabidopsis thaliana
GN=HCC2 PE=2 SV=1
Length = 276
Score = 325 bits (832), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 206/276 (74%), Gaps = 13/276 (4%)
Query: 4 SRFLFFSSKHRFRQPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQE--TKA-S 60
R L S K+ Q + +RR SKR QS +Y KS+RQ H P L P T+A S
Sbjct: 4 CRRLVLSCKN---QAASFLRRCGPSKRIQSVNYCKSTRQGHEIPDVKPLFPTGGGTQAPS 60
Query: 61 RSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQ-----GENSGPNR-VTGPIIGGPF 114
RS + Y +PA LLG AG F+HYNDERRAV +GQ G G N V GPIIGGPF
Sbjct: 61 RSRARYAVPAI-LLGFAGFVGFLHYNDERRAVPRGQASSNSGCGCGSNTTVKGPIIGGPF 119
Query: 115 TLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFV 174
TL+ TEN++VTEN+F G WVLLYFGY+ SPDVGPEQ++MM+KA+D L+SK N KILP+FV
Sbjct: 120 TLVSTENKIVTENDFCGKWVLLYFGYSFSPDVGPEQLKMMSKAVDKLESKHNEKILPVFV 179
Query: 175 TIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSH 234
T+DPQRDTP+HL AYLKEF+SRI+GLTG A+RQMAQEYRV+FKKV+E+G+DYLV++SH
Sbjct: 180 TLDPQRDTPSHLHAYLKEFDSRILGLTGTASAMRQMAQEYRVYFKKVQEDGEDYLVDTSH 239
Query: 235 NMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAS 270
NMYL+NP +E+VRCFGVEY +EL++E+ KE+ S
Sbjct: 240 NMYLINPKMEIVRCFGVEYNPDELSQELLKEVASVS 275
>sp|Q8VYP0|SCO11_ARATH Protein SCO1 homolog 1, mitochondrial OS=Arabidopsis thaliana
GN=HCC1 PE=2 SV=1
Length = 334
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/212 (34%), Positives = 127/212 (59%), Gaps = 11/212 (5%)
Query: 62 SWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENS-----GPNRVTGPIIGGPFTL 116
SW ++ LL G +Y+ +++ + +NS GP+ IGGPF+L
Sbjct: 126 SWMSFF-----LLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPS-AGKAAIGGPFSL 179
Query: 117 IDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176
I + + VTE N +G W +LYFG+T PD+ P+++ +A AID + + ++P+F+++
Sbjct: 180 IRDDGKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKENSGVDVVPVFISV 239
Query: 177 DPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNM 236
DP+RDT + Y+KEF+ +++GLTG I+ +A+ YRV++ K EEE DYLV+ S M
Sbjct: 240 DPERDTVQQVHEYVKEFHPKLIGLTGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVM 299
Query: 237 YLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268
YLM+P + V+ +G + + L + + KE+++
Sbjct: 300 YLMSPEMNFVKFYGKNHDVDSLTDGVVKEIRQ 331
>sp|O42899|SCO1_SCHPO Protein sco1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sco1 PE=3 SV=1
Length = 263
Score = 147 bits (370), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 123/210 (58%), Gaps = 5/210 (2%)
Query: 57 TKASRSWSTYVIPAGGLLGLA-GIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFT 115
T+ +SW + LL A + + ++ E++ V + Q + + P +GG F+
Sbjct: 44 TQTYQSWRGMISIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLAT-IGRPQLGGAFS 102
Query: 116 LIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVT 175
LID VT+N+F G + L+YFG+T PD+ P+++ M+ AIDI+++ + PIF+T
Sbjct: 103 LIDHHGNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDVVYPIFIT 162
Query: 176 IDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFF---KKVEEEGDDYLVES 232
DP RD P + YL++FN +IVGLTG I+ + +++RV+F K ++ + DDYLV+
Sbjct: 163 CDPARDPPQEMAEYLEDFNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLVDH 222
Query: 233 SHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262
S YLM+P + + FG T+E+LA I
Sbjct: 223 SVFFYLMDPEGKFIEVFGRNSTSEDLARAI 252
>sp|A1A4J8|SCO1_BOVIN Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1
Length = 305
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 108 PIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNL 167
P++GGPF+L T+ ++LG WVL+YFG+T PD+ PE+++ M + +D +DS L
Sbjct: 138 PLLGGPFSLTTHTGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTL 197
Query: 168 -KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEG 225
+ P+F+TIDP+RDT + Y+KEF+ +++GLTG I Q+A+ +RV++ ++E
Sbjct: 198 PNLTPLFITIDPERDTKEAIANYVKEFSPKLIGLTGTKEEIDQVARAFRVYYSPGPKDED 257
Query: 226 DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267
+DY+V+ + MYL+ P E + FG E+A I+ M+
Sbjct: 258 EDYIVDHTIIMYLIGPDGEFLDYFGQNKKNAEIAGSIAAHMR 299
>sp|O75880|SCO1_HUMAN Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1
SV=1
Length = 301
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 108 PIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNL 167
P++GGPF+L T+ ++LG W+L+YFG+T PDV PE+++ M + +D +DS L
Sbjct: 134 PLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTL 193
Query: 168 KIL-PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEG 225
L P+F++IDP+RDT + Y+KEF+ ++VGLTG + Q+A+ YRV++ ++E
Sbjct: 194 PDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDED 253
Query: 226 DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267
+DY+V+ + MYL+ P E + FG E+A I+ M+
Sbjct: 254 EDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMR 295
>sp|Q5SUC9|SCO1_MOUSE Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2
SV=1
Length = 284
Score = 130 bits (327), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/162 (38%), Positives = 103/162 (63%), Gaps = 2/162 (1%)
Query: 108 PIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNL 167
P++GGPF+L T+ ++LG WVL+YFG+T PD+ PE+++ M + ++ +DS +L
Sbjct: 117 PLLGGPFSLTTHNGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSL 176
Query: 168 -KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEG 225
+ P+F+TIDP+RDT + Y+KEF+ ++VGLTG I +A+ YRV++ ++E
Sbjct: 177 PNLTPLFITIDPERDTKEAIATYVKEFSPKLVGLTGTKEEIDGVARAYRVYYSPGPKDED 236
Query: 226 DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267
+DY+V+ + MYL+ P E + FG E+A I+ M+
Sbjct: 237 EDYIVDHTIIMYLIGPDGEFLDYFGQNKKKAEIAGSIAAHMR 278
>sp|P38072|SCO2_YEAST Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO2 PE=1 SV=1
Length = 301
Score = 127 bits (318), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 114/199 (57%), Gaps = 6/199 (3%)
Query: 72 GLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPI-IGGPFTLIDTENRLVTENNFL 130
LL L+G T+ + + +RR + + ++ NR G + +GGPF L D + TE N
Sbjct: 85 ALLLLSG-GTYAYLSRKRRLLETEKEADA--NRAYGSVALGGPFNLTDFNGKPFTEENLK 141
Query: 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL 190
G + +LYFG++ PD+ PE++ + I LD K ++KI P+F++ DP RDTP L+ YL
Sbjct: 142 GKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHIKIQPLFISCDPARDTPDVLKEYL 201
Query: 191 KEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEE--EGDDYLVESSHNMYLMNPSLEVVRC 248
+F+ I+GLTG ++ + ++Y+V+F + DYLV+ S YL++P + +
Sbjct: 202 SDFHPAIIGLTGTYDQVKSVCKKYKVYFSTPRDVKPNQDYLVDHSIFFYLIDPEGQFIDA 261
Query: 249 FGVEYTAEELAEEISKEMK 267
G Y + E+I ++++
Sbjct: 262 LGRNYDEQSGLEKIREQIQ 280
>sp|P23833|SCO1_YEAST Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SCO1 PE=1 SV=1
Length = 295
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 110/198 (55%), Gaps = 6/198 (3%)
Query: 73 LLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTG-PIIGGPFTLIDTENRLVTENNFLG 131
L + G ++ ++RR + + E NR G P +GGPF L D TE N LG
Sbjct: 80 FLAVGGALSYFFNREKRRLETQKEAE---ANRGYGKPSLGGPFHLEDMYGNEFTEKNLLG 136
Query: 132 NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLK 191
+ ++YFG+++ PD+ P+++ + ++ L SK + + P+F+T DP RD+PA L+ YL
Sbjct: 137 KFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFITCDPARDSPAVLKEYLS 196
Query: 192 EFNSRIVGLTGPVGAIRQMAQEYRVFFKKVE--EEGDDYLVESSHNMYLMNPSLEVVRCF 249
+F+ I+GLTG ++ ++YRV+F + G DYLV+ S YLM+P + V
Sbjct: 197 DFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDAL 256
Query: 250 GVEYTAEELAEEISKEMK 267
G Y + ++I + +K
Sbjct: 257 GRNYDEKTGVDKIVEHVK 274
>sp|Q1RIN4|SCO22_RICBR SCO2-like protein RBE_0699 OS=Rickettsia bellii (strain RML369-C)
GN=RBE_0699 PE=3 SV=1
Length = 204
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 95/154 (61%), Gaps = 4/154 (2%)
Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
IGG F LID L + G L+YFG+TS PD+ P + + KA++IL S+ + I
Sbjct: 47 IGGDFELIDQNGELFNSDELKGKLSLIYFGFTSCPDICPTSLNKITKAVEIL-SENKIDI 105
Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGD--- 226
+P+F+TIDP RDTPA L+ YLK F+ + +GLTG IR++A +++V++ K E D
Sbjct: 106 VPVFITIDPSRDTPAVLKEYLKHFHPKFIGLTGDEKQIREVADKFKVYYAKAASENDNDQ 165
Query: 227 DYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260
DY+++ S YLM+ + + ++ F ++ ++ E
Sbjct: 166 DYMLDHSSFTYLMDKNGKYLKHFYLDSAPSKIME 199
>sp|Q5RH02|SCO2_DANRE Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3
SV=1
Length = 279
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 110/205 (53%), Gaps = 27/205 (13%)
Query: 75 GLAGIATFVHYNDERR----------AVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLV 124
G+ G +VH E+R V GQG+ F L+D +
Sbjct: 82 GIIGTWWYVHQEKEKRIQMQRLEQLRKVALGQGD---------------FHLLDHTGQRR 126
Query: 125 TENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNL-KILPIFVTIDPQRDTP 183
T+ +FLG+WVLLYFG+T PD+ P++++ + + ILD +L + P+F+T+DP+RD
Sbjct: 127 TKRDFLGHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFITVDPERDDV 186
Query: 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEGDDYLVESSHNMYLMNPS 242
+ + Y+K+F+ R+VGLTG ++Q +++RV+ ++E DY+V+ S +YL+NP
Sbjct: 187 SAMARYVKDFHPRLVGLTGSAEEVKQAGRDFRVYASNGPKDEDGDYIVDHSIVIYLVNPD 246
Query: 243 LEVVRCFGVEYTAEELAEEISKEMK 267
+ + ++AE I MK
Sbjct: 247 GLFIDYYNRMKNDTQIAESIRNHMK 271
>sp|Q92H76|SCO22_RICCN SCO2-like protein RC0895 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=RC0895 PE=3 SV=1
Length = 205
Score = 119 bits (297), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 98/158 (62%), Gaps = 3/158 (1%)
Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
IGG F LID + + GN L+YFG+TS PD+ P + M + ++IL+ K + I
Sbjct: 49 IGGDFELIDQNGEIFNSDKLKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHK-IDI 107
Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDD-- 227
LP+F+TIDP+RDTP L+ YLK F+ + +GLTG I+ + +++VF+ +V + DD
Sbjct: 108 LPVFITIDPKRDTPIALKEYLKHFHPKFIGLTGNEQQIKDVTDKFKVFYARVHGDDDDPN 167
Query: 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265
Y+++ S YL++ + + ++ F ++ + +E+ E + E
Sbjct: 168 YMLDHSSFTYLIDANGKYLKHFYLDSSPKEMMEFLRNE 205
>sp|A6H784|SCO2_BOVIN Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1
Length = 266
Score = 117 bits (294), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLK-IL 170
G F+L+D R+ + +F G WVLLYFG+T PD+ P++++ + + + L+++ L +
Sbjct: 102 GDFSLLDHRGRVRCKADFRGQWVLLYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQ 161
Query: 171 PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEGDDYL 229
P+F+T+DP+RDT A + Y+++F+ R++GLTG I Q+++ YRV++ ++E DY+
Sbjct: 162 PLFITVDPERDTVAAMARYVQDFHPRLLGLTGSAEQIAQVSRSYRVYYSAGPKDEDQDYI 221
Query: 230 VESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266
V+ S +YL++P + +AE++ + + + M
Sbjct: 222 VDHSIAIYLLSPDGLFTDYYSRARSAEQITDSVRRHM 258
>sp|Q4UKW2|SCO22_RICFE SCO2-like protein RF_0960 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=RF_0960 PE=3 SV=1
Length = 205
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 96/153 (62%), Gaps = 3/153 (1%)
Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
IGG F LID + + GN L+YFG+TS PD+ P + M + ++IL+ K + I
Sbjct: 49 IGGDFELIDQNGEIFNSDELKGNLSLIYFGFTSCPDICPTSLNKMTEIVEILNKHK-IDI 107
Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDD-- 227
LP+F+TIDP+RDTP L+ YLK F+ + +GLTG I+ + +++VF+ +V + DD
Sbjct: 108 LPVFITIDPKRDTPIVLKEYLKHFHPKFIGLTGNEQQIKGVTDKFKVFYARVNGDDDDPN 167
Query: 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260
Y+++ S YL++ + + ++ F ++ + +E+ E
Sbjct: 168 YMLDHSSFTYLIDANGKYLKHFYLDSSPKEIME 200
>sp|Q8VCL2|SCO2_MOUSE Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2
SV=1
Length = 255
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 100/157 (63%), Gaps = 2/157 (1%)
Query: 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKIL- 170
G F+L+D + + + +F G WVL+YFG+T PD+ P++++ + + + L+++ +L ++
Sbjct: 91 GDFSLLDHKGQPRCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRKLEAEPDLPLVQ 150
Query: 171 PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEGDDYL 229
P+F+T+DP+RD A + Y++EF+ R++GLTG + ++ YRV++ ++E DY+
Sbjct: 151 PVFITVDPERDDVAAMARYVQEFHPRLLGLTGSTEQVAHASRNYRVYYSAGPKDEDQDYI 210
Query: 230 VESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266
V+ S +YL+NP +G +AE++ E I + +
Sbjct: 211 VDHSIAIYLLNPDGLFTDYYGRSRSAEQIVESIRRHI 247
>sp|Q9ZCW7|SCO22_RICPR SCO2-like protein RP587 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP587 PE=3 SV=1
Length = 205
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 95/158 (60%), Gaps = 3/158 (1%)
Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
IGGPF LID + + G+ L+YFG+TS PD+ P + + ++IL K + I
Sbjct: 49 IGGPFELIDQNGEIFNSDKLRGHLSLIYFGFTSCPDICPTSLNKITNIVEILHQNK-IDI 107
Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDD-- 227
+P+F+T+DP+RDTP L+ Y+K F+ + + LTG I+ + +++VF+ +V + DD
Sbjct: 108 IPVFITVDPKRDTPEVLKEYIKNFHPKFISLTGNEHQIKDVTDKFKVFYARVNSDNDDQN 167
Query: 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265
Y+++ S YL++ + ++ F ++ +A+E+ E E
Sbjct: 168 YMIDHSSFTYLIDKNGRYMKHFYLDISAKEIMELFKNE 205
>sp|O43819|SCO2_HUMAN Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1
SV=3
Length = 266
Score = 115 bits (287), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
Query: 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLK-IL 170
G F L+D R + +F G WVL+YFG+T PD+ P++++ + + + L+++ L +
Sbjct: 102 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQ 161
Query: 171 PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK-VEEEGDDYL 229
P+F+T+DP+RD + Y+++F+ R++GLTG + Q + YRV++ ++E DY+
Sbjct: 162 PVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYI 221
Query: 230 VESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266
V+ S +YL+NP +G +AE++++ + + M
Sbjct: 222 VDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHM 258
>sp|Q52720|SENC_RHOCB Protein SenC OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=senC PE=3 SV=2
Length = 221
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 91/180 (50%), Gaps = 10/180 (5%)
Query: 84 HYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSS 143
H D A RKG G S IGGPFTLI VT+ + + L+YFGY+
Sbjct: 31 HETDRFAACRKGTGSASAQ-------IGGPFTLISETGATVTDRDVITKPSLVYFGYSYC 83
Query: 144 PDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGP 203
PDV P A A+D+L +++ + P+F+++D RDTP L + + +++GLTG
Sbjct: 84 PDVCPIDSTRNAAAVDLL-AERGHDVTPVFISVDAARDTPPVLTEFTDLMSPKMIGLTGT 142
Query: 204 VGAIRQMAQEYRVFFKKVEEEGDD-YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262
I + YR ++ + GD LV+ S YLM+P L + + + T E +A+ +
Sbjct: 143 PEQIDAAVKAYRAYY-LIRNPGDPATLVDHSTQTYLMDPKLGFLDFYDRDATPEMVADSV 201
>sp|Q68WF1|SCO22_RICTY SCO2-like protein RT0576 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=RT0576 PE=3 SV=2
Length = 203
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/158 (31%), Positives = 88/158 (55%), Gaps = 3/158 (1%)
Query: 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKI 169
IG F LID + N G+ L+YFG+TS PD+ P + M ++IL + I
Sbjct: 47 IGEAFELIDQNGEIFNSNKLRGHLSLIYFGFTSCPDICPTFLNKMTNIVEILHQNQIDII 106
Query: 170 LPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDD-- 227
+TIDP+RDTP L+ Y+K F+ + + LTG I+ + ++++ + +V DD
Sbjct: 107 PIF-ITIDPKRDTPEVLKEYIKNFHPKFICLTGNEHQIKDVTDKFKILYARVNGYDDDQN 165
Query: 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265
Y+++ S YL++ + + ++ F ++ +A+E+ E + E
Sbjct: 166 YMIDHSSFTYLIDKNGKYIKHFYLDISAKEIMEFLRNE 203
>sp|P47206|SCOP_PSEST Putative copper-binding protein OS=Pseudomonas stutzeri GN=scoP
PE=3 SV=2
Length = 204
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 67/126 (53%)
Query: 116 LIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVT 175
L+D ++ + G W +L+FG+T+ PD+ P + M + L ++ ++ + +T
Sbjct: 50 LVDQNDQPFSTETLKGRWHILFFGFTACPDICPTTLSEMRRLFGQLPAETREQLQLVLIT 109
Query: 176 IDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHN 235
DP RDTP L+ YL + + +GLTG + ++++++ + F E DY V S N
Sbjct: 110 ADPARDTPQQLKTYLSYYRAGFIGLTGNMEQLQRLSKALGLPFVPATETEGDYSVSHSGN 169
Query: 236 MYLMNP 241
+ L+ P
Sbjct: 170 LALVGP 175
>sp|Q4UNH4|SCO21_RICFE SCO2-like protein RF_0043 OS=Rickettsia felis (strain ATCC VR-1525
/ URRWXCal2) GN=RF_0043 PE=3 SV=1
Length = 198
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 83/142 (58%), Gaps = 6/142 (4%)
Query: 114 FTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIF 173
FTLID E + + G+ L+YFG T S + ++ + I IL K+N+ + +F
Sbjct: 55 FTLIDQEGKKFDSTHLQGHLSLIYFGTTYSL-YDNQALKRVEDIIKIL-KKENIVVQVVF 112
Query: 174 VTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFF--KKVEEEGDDYLVE 231
+T+DPQ DT L+ YL++ + +GLTG V I Q+A +++VF+ K + + ++Y ++
Sbjct: 113 ITLDPQHDTSEVLKKYLEKIDDNFIGLTGRVQDIEQLADQFKVFYTSKIFDVKTNEYELQ 172
Query: 232 SSHNMYLMNPSLEVVR--CFGV 251
S+ +YL++ + ++ C G+
Sbjct: 173 HSNFVYLISSQGKFLKHYCLGL 194
>sp|Q9ZEB4|SCO21_RICPR SCO2-like protein RP031 OS=Rickettsia prowazekii (strain Madrid E)
GN=RP031 PE=3 SV=1
Length = 191
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 78/131 (59%), Gaps = 4/131 (3%)
Query: 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPI 172
FTLI+ + + N G L+YFG T S + ++ + I IL ++N+ + +
Sbjct: 51 KFTLIEQQGKKFDSTNLQGYLSLIYFGTTYSL-YDNQALKRVEDIIKIL-KRENILLQVV 108
Query: 173 FVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFF--KKVEEEGDDYLV 230
F+T+DP+ DT L+ YL++ +S +GLTG V I Q+AQ+++VF+ K + + ++Y +
Sbjct: 109 FITLDPEHDTSEVLKKYLEKIDSNFIGLTGRVQDIEQLAQQFKVFYTSKIFDVKTNEYAL 168
Query: 231 ESSHNMYLMNP 241
+ S+ +YL++
Sbjct: 169 QHSNFVYLISS 179
>sp|Q1RKK4|SCO21_RICBR SCO2-like protein RBE_0029 OS=Rickettsia bellii (strain RML369-C)
GN=RBE_0029 PE=3 SV=1
Length = 199
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 6/142 (4%)
Query: 114 FTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIF 173
F L D + ++ + + G+ L+YFG T S D ++ + I IL K+N+ + +F
Sbjct: 55 FALKDQKGKVFNDKDLKGHLSLIYFGVTYSLD-DENALKKIEDIIKIL-QKENIVVQTVF 112
Query: 174 VTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFF--KKVEEEGDDYLVE 231
+T+DP DT L+ YL+ ++ +GLTG + I Q+A E++VF+ K + E Y ++
Sbjct: 113 ITLDPINDTSEVLKKYLENIDNNFIGLTGTIDDITQVANEFKVFYEPKTFDTETGKYELK 172
Query: 232 SSHNMYLMNPSLEVVR--CFGV 251
S+ +YL++ + ++ C G+
Sbjct: 173 HSNFVYLISSDGKFLKHYCLGL 194
>sp|Q92JM5|SCO21_RICCN SCO2-like protein RC0042 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=RC0042 PE=3 SV=1
Length = 199
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 75/132 (56%), Gaps = 5/132 (3%)
Query: 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPI 172
FTLID E + + G+ L+YFG T S + ++ + I IL K+N+ + +
Sbjct: 54 KFTLIDQEGKKFDSTHLQGHLSLIYFGTTYSL-YDNQTLKRVEDIIKIL-KKENILVQVV 111
Query: 173 FVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFF---KKVEEEGDDYL 229
F+T+D + DT L+ YL++ + +GLTG V I Q+A +++VFF K + + + Y
Sbjct: 112 FITLDSEHDTSEVLKKYLEKIDDNFIGLTGRVEDIEQLADQFKVFFYTSKIFDVKTNKYE 171
Query: 230 VESSHNMYLMNP 241
++ S+ +YL++
Sbjct: 172 LQHSNFVYLISS 183
>sp|P54178|SCO1_BACSU SCO1 protein homolog OS=Bacillus subtilis (strain 168) GN=ypmQ PE=1
SV=2
Length = 193
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 9/163 (5%)
Query: 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPI 172
PFT + + + V+ + G L F +T+ + P M L ++ N+ + I
Sbjct: 34 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKAE-NIDVRII 92
Query: 173 FVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRV-FFKKV--EEEGDDYL 229
++DP+ D P L+ + + G + +E+ + FK + + EG+D +
Sbjct: 93 SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQV 152
Query: 230 VESSHNMYLMNPSLEVVRCF-GVEYTAEELAEEISKEMKKAST 271
+ S + YL+ P +V++ + GVE T ++I ++K AST
Sbjct: 153 IHQS-SFYLVGPDGKVLKDYNGVENTP---YDDIISDVKSAST 191
>sp|Q61539|ERR2_MOUSE Steroid hormone receptor ERR2 OS=Mus musculus GN=Esrrb PE=1 SV=2
Length = 433
Score = 33.1 bits (74), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 70/153 (45%), Gaps = 24/153 (15%)
Query: 102 PNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDIL 161
PN + I TL + +R E FL NW G+ S +G + + + ++IL
Sbjct: 229 PNDIPEGDIKALTTLCELADR---ELVFLINWAKHIPGFPSL-TLGDQMSLLQSAWMEIL 284
Query: 162 DSKKNLKILPIFVTIDPQRDTPAHLRAY-LKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK 220
IL I P D A+ Y + E +SR+VGL AI Q+ + Y KK
Sbjct: 285 -------ILGIVYRSLPYDDKLAYAEDYIMDEEHSRLVGLLDLYRAILQLVRRY----KK 333
Query: 221 VEEEGDDYLV------ESSHNMYLMNPSLEVVR 247
++ E +++++ +S +MY+ N LE V+
Sbjct: 334 LKVEKEEFMILKALALANSDSMYIEN--LEAVQ 364
>sp|P44411|BCP_HAEIN Putative peroxiredoxin bcp OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=bcp PE=3 SV=1
Length = 155
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 12/108 (11%)
Query: 114 FTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIF 173
FTL++ + + V+ ++F G VL+YF Y + G +A + DSK L +L +
Sbjct: 13 FTLLNQQEKFVSLSDFRGKKVLIYF-YPKALTPG-----CTTQACGLRDSKSELDVLGLV 66
Query: 174 VT-IDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK 220
V I P D P L ++++ L+ P Q+A+++ V+ +K
Sbjct: 67 VLGISP--DAPKKLAQFIEKKELNFTLLSDPD---HQVAEQFGVWGEK 109
>sp|Q68FN7|DHSDB_DANRE Succinate dehydrogenase [ubiquinone] cytochrome b small subunit B,
mitochondrial OS=Danio rerio GN=sdhdb PE=2 SV=1
Length = 158
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 28/157 (17%)
Query: 17 QPLNLIRRFDLSKRTQSCSYTKSSRQSHRNPADYFLSPQETKASRSWSTYVIPAGGLLGL 76
+P +LIR + ++ CSY S+R H P++Y S + A+ W+ I + LL L
Sbjct: 21 RPSSLIRPLAVQQKDHDCSYLISARI-HATPSNYAGSGSKA-ATMHWTGERILSIALLSL 78
Query: 77 AGIATF-----VHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLG 131
A +A F V Y+ G G +V + G D + ++ F+
Sbjct: 79 APVAYFCPSPAVDYSLAAALTLHGHW---GLGQVVTDYVHG-----DAKIKMANAGLFVL 130
Query: 132 NWV----LLYFGYTSSPDVGPEQVQMMAKAIDILDSK 164
+ V L YF Y DVG + KA+ +L SK
Sbjct: 131 STVTFAGLCYFNYH---DVG------ICKAVALLWSK 158
>sp|O34575|YKCB_BACSU Putative mannosyltransferase YkcB OS=Bacillus subtilis (strain 168)
GN=ykcB PE=3 SV=2
Length = 716
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 20/135 (14%)
Query: 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILP-----------IFVTIDPQRDTP 183
LLY G +S P+ GP+ M K + + D+ N K++ +F T D P
Sbjct: 542 LLYGGNSSLPETGPQLASMSGKGMGMSDATVNEKLIKYLEENNSGAEYLFATTDSNTAAP 601
Query: 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGD-DYLVESSHNMYLMNPS 242
++ K+ I G +G AI + Q FKK+ +EG Y + S N
Sbjct: 602 YIIKT--KKAVMAIGGYSGSDPAIT-LTQ-----FKKLVKEGKVKYFLASGMGRGGNNDI 653
Query: 243 LEVVRCFGVEYTAEE 257
+E V G E +E+
Sbjct: 654 VEWVEKNGKEVASEK 668
>sp|A7HXJ5|DGTL1_PARL1 Deoxyguanosinetriphosphate triphosphohydrolase-like protein
OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
/ NCIMB 13966) GN=Plav_3021 PE=3 SV=1
Length = 396
Score = 31.6 bits (70), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 205 GAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263
GA R++ + +VF V EGD+Y SH++ + + V R FG++ E+L+E ++
Sbjct: 46 GAFRRLKYKTQVF---VYHEGDNYRTRLSHSLEVSQIARSVARVFGLD---EDLSETLA 98
>sp|Q1GSP1|PTH_SPHAL Peptidyl-tRNA hydrolase OS=Sphingopyxis alaskensis (strain DSM
13593 / LMG 18877 / RB2256) GN=pth PE=3 SV=1
Length = 189
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 52 LSPQETKASRSWSTYVIPAGGLLGLAGIATFV-HYNDERRAVRKGQGENSGPNRVTGPII 110
L+P + K R GG G GI + + H D+ R +R G G +RVTG ++
Sbjct: 95 LAPMKVKVKR--------GGGAAGHNGIRSMIQHIGDDFRRIRIGIGHPGHKDRVTGHVL 146
Query: 111 G 111
G
Sbjct: 147 G 147
>sp|A8M502|RS11_SALAI 30S ribosomal protein S11 OS=Salinispora arenicola (strain CNS-205)
GN=rpsK PE=3 SV=1
Length = 135
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 179 QRDTPAHLRAYLKE-FNSRIVGLTGPVGAIRQMAQEYRVFFK 219
+R AH +A++K FN+ IV +T P GA+ A +V FK
Sbjct: 18 ERKNVAHGQAHIKSTFNNTIVSITDPTGAVISWASAGQVGFK 59
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,458,216
Number of Sequences: 539616
Number of extensions: 4380325
Number of successful extensions: 9917
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 9862
Number of HSP's gapped (non-prelim): 33
length of query: 271
length of database: 191,569,459
effective HSP length: 116
effective length of query: 155
effective length of database: 128,974,003
effective search space: 19990970465
effective search space used: 19990970465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)