Query 042757
Match_columns 271
No_of_seqs 253 out of 2060
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 09:07:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042757.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042757hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2792 Putative cytochrome C 100.0 5.6E-43 1.2E-47 295.5 21.5 210 60-270 69-279 (280)
2 COG1999 Uncharacterized protei 100.0 1.5E-33 3.2E-38 239.5 23.9 159 110-268 46-206 (207)
3 PF02630 SCO1-SenC: SCO1/SenC; 100.0 2.7E-33 5.9E-38 232.3 17.8 144 107-251 28-173 (174)
4 cd02968 SCO SCO (an acronym fo 100.0 8.2E-28 1.8E-32 192.1 17.7 141 111-251 2-142 (142)
5 PTZ00056 glutathione peroxidas 99.9 1.2E-24 2.6E-29 184.2 18.4 151 111-268 19-180 (199)
6 PRK15412 thiol:disulfide inter 99.9 1.9E-24 4.2E-29 181.0 16.2 135 105-269 41-179 (185)
7 cd00340 GSH_Peroxidase Glutath 99.9 8.4E-25 1.8E-29 177.5 10.5 146 111-262 2-152 (152)
8 PLN02399 phospholipid hydroper 99.9 3.7E-24 8E-29 184.6 14.3 155 105-267 75-235 (236)
9 PLN02412 probable glutathione 99.9 8.7E-24 1.9E-28 174.2 12.0 153 108-268 6-166 (167)
10 TIGR02540 gpx7 putative glutat 99.9 5.5E-23 1.2E-27 167.0 13.7 139 112-266 3-153 (153)
11 PRK03147 thiol-disulfide oxido 99.9 5E-22 1.1E-26 163.8 19.5 132 110-265 40-171 (173)
12 PRK09437 bcp thioredoxin-depen 99.9 2.6E-22 5.7E-27 162.9 16.6 139 105-257 6-144 (154)
13 TIGR00385 dsbE periplasmic pro 99.9 5.4E-22 1.2E-26 164.4 15.7 134 104-267 35-172 (173)
14 PRK00522 tpx lipid hydroperoxi 99.9 9.8E-22 2.1E-26 162.0 16.9 126 105-249 20-147 (167)
15 TIGR02661 MauD methylamine deh 99.9 3E-21 6.5E-26 162.2 19.6 130 103-264 46-177 (189)
16 cd02969 PRX_like1 Peroxiredoxi 99.9 8.7E-22 1.9E-26 162.7 15.8 138 111-269 4-155 (171)
17 PTZ00256 glutathione peroxidas 99.9 2.6E-21 5.6E-26 161.8 16.5 148 110-267 19-182 (183)
18 COG1225 Bcp Peroxiredoxin [Pos 99.9 4.6E-21 9.9E-26 154.2 16.8 149 105-268 6-154 (157)
19 PF08534 Redoxin: Redoxin; In 99.9 1.3E-21 2.7E-26 157.3 13.0 131 106-254 3-136 (146)
20 cd03017 PRX_BCP Peroxiredoxin 99.9 1.9E-21 4.2E-26 154.8 14.0 136 111-262 3-139 (140)
21 cd03018 PRX_AhpE_like Peroxire 99.9 3.6E-21 7.9E-26 154.9 14.1 125 111-252 7-133 (149)
22 cd03014 PRX_Atyp2cys Peroxired 99.9 8.7E-21 1.9E-25 151.9 14.7 121 111-250 6-127 (143)
23 cd03008 TryX_like_RdCVF Trypar 99.9 1.6E-20 3.6E-25 150.6 14.8 110 122-249 16-129 (146)
24 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 7.9E-21 1.7E-25 148.0 12.5 119 111-248 5-124 (124)
25 cd03010 TlpA_like_DsbE TlpA-li 99.9 5.2E-21 1.1E-25 150.2 11.3 122 111-258 3-126 (127)
26 TIGR03137 AhpC peroxiredoxin. 99.9 1.4E-20 3E-25 157.9 14.3 138 105-263 4-153 (187)
27 cd03015 PRX_Typ2cys Peroxiredo 99.8 4.5E-20 9.9E-25 152.8 16.7 136 111-265 5-156 (173)
28 cd02971 PRX_family Peroxiredox 99.8 7.6E-20 1.6E-24 145.5 13.4 126 111-252 2-129 (140)
29 PRK13190 putative peroxiredoxi 99.8 1.4E-19 3.1E-24 153.5 15.4 145 105-267 4-155 (202)
30 PRK10606 btuE putative glutath 99.8 2.2E-19 4.7E-24 149.6 15.9 152 111-267 5-182 (183)
31 cd03012 TlpA_like_DipZ_like Tl 99.8 7.1E-20 1.5E-24 143.8 11.4 110 121-251 13-124 (126)
32 cd02967 mauD Methylamine utili 99.8 3.1E-19 6.7E-24 137.2 13.7 109 112-248 1-111 (114)
33 cd02964 TryX_like_family Trypa 99.8 1.9E-19 4.2E-24 142.5 11.9 112 118-250 5-117 (132)
34 PRK10382 alkyl hydroperoxide r 99.8 8.6E-19 1.9E-23 146.8 14.8 139 105-264 4-154 (187)
35 cd03016 PRX_1cys Peroxiredoxin 99.8 7.7E-19 1.7E-23 149.2 14.6 137 111-265 5-153 (203)
36 PRK13191 putative peroxiredoxi 99.8 9.7E-19 2.1E-23 149.6 15.3 141 105-265 9-160 (215)
37 PRK13599 putative peroxiredoxi 99.8 8E-19 1.7E-23 150.1 14.4 141 105-265 4-155 (215)
38 PRK14018 trifunctional thiored 99.8 2.4E-18 5.1E-23 163.1 18.7 131 110-263 37-170 (521)
39 cd02966 TlpA_like_family TlpA- 99.8 8.1E-19 1.8E-23 133.1 12.5 116 113-251 1-116 (116)
40 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 7.9E-19 1.7E-23 136.7 12.5 121 112-261 1-121 (123)
41 cd03009 TryX_like_TryX_NRX Try 99.8 5.3E-19 1.1E-23 139.6 11.6 113 116-249 3-116 (131)
42 PRK15000 peroxidase; Provision 99.8 2.4E-18 5.1E-23 145.8 14.7 139 105-264 4-160 (200)
43 TIGR01626 ytfJ_HI0045 conserve 99.8 1.7E-18 3.7E-23 143.7 13.3 123 120-268 48-181 (184)
44 PTZ00137 2-Cys peroxiredoxin; 99.8 3.4E-18 7.3E-23 149.5 15.6 140 104-265 69-224 (261)
45 PRK13728 conjugal transfer pro 99.8 1.2E-17 2.5E-22 138.1 16.0 117 112-268 56-173 (181)
46 PRK13189 peroxiredoxin; Provis 99.8 6.6E-18 1.4E-22 145.2 15.0 140 105-265 11-162 (222)
47 cd02970 PRX_like2 Peroxiredoxi 99.8 5.5E-18 1.2E-22 135.9 12.9 130 111-251 2-148 (149)
48 PTZ00253 tryparedoxin peroxida 99.8 8.3E-18 1.8E-22 142.4 13.1 126 105-251 8-145 (199)
49 PLN02919 haloacid dehalogenase 99.8 1.4E-17 3.1E-22 170.9 15.8 140 105-268 393-538 (1057)
50 PF13905 Thioredoxin_8: Thiore 99.7 2.6E-17 5.7E-22 122.5 11.5 95 131-245 1-95 (95)
51 COG0450 AhpC Peroxiredoxin [Po 99.7 1.1E-15 2.3E-20 125.9 13.9 140 105-264 5-159 (194)
52 TIGR02738 TrbB type-F conjugat 99.7 3E-16 6.4E-21 127.2 9.7 109 121-266 44-153 (153)
53 KOG2501 Thioredoxin, nucleored 99.6 1.6E-15 3.4E-20 121.3 9.3 117 114-249 15-132 (157)
54 cd03013 PRX5_like Peroxiredoxi 99.6 8.4E-15 1.8E-19 119.2 13.3 125 111-250 5-138 (155)
55 cd02950 TxlA TRX-like protein 99.6 7.8E-15 1.7E-19 117.7 8.8 109 115-268 2-112 (142)
56 COG0386 BtuE Glutathione perox 99.4 1.4E-12 3.1E-17 103.2 9.6 145 112-268 6-162 (162)
57 cd02985 TRX_CDSP32 TRX family, 99.4 4.4E-12 9.6E-17 96.0 10.9 88 129-263 13-100 (103)
58 TIGR02740 TraF-like TraF-like 99.3 6E-12 1.3E-16 111.4 10.2 109 121-267 156-265 (271)
59 cd02951 SoxW SoxW family; SoxW 99.3 3.9E-11 8.3E-16 93.8 11.7 105 130-268 12-121 (125)
60 cd02956 ybbN ybbN protein fami 99.3 5.8E-11 1.2E-15 88.2 10.9 85 130-262 11-95 (96)
61 cd02999 PDI_a_ERp44_like PDIa 99.3 4.2E-11 9.2E-16 90.2 9.5 85 127-260 14-98 (100)
62 KOG1651 Glutathione peroxidase 99.2 1.5E-10 3.2E-15 92.9 12.1 145 112-267 15-170 (171)
63 PRK09381 trxA thioredoxin; Pro 99.2 1.6E-10 3.4E-15 88.1 11.2 90 130-267 20-109 (109)
64 KOG0910 Thioredoxin-like prote 99.2 1.2E-10 2.5E-15 92.6 10.6 90 130-267 60-149 (150)
65 cd02963 TRX_DnaJ TRX domain, D 99.2 1.7E-10 3.7E-15 88.5 10.6 89 129-264 22-110 (111)
66 cd02948 TRX_NDPK TRX domain, T 99.2 2E-10 4.3E-15 86.7 10.1 86 130-264 16-101 (102)
67 KOG0855 Alkyl hydroperoxide re 99.2 3.3E-10 7.2E-15 90.8 11.6 143 105-266 65-208 (211)
68 COG2077 Tpx Peroxiredoxin [Pos 99.2 9E-10 2E-14 87.1 13.7 129 103-249 18-147 (158)
69 cd02953 DsbDgamma DsbD gamma f 99.2 1.7E-10 3.7E-15 87.1 9.1 90 130-262 10-103 (104)
70 KOG0852 Alkyl hydroperoxide re 99.2 2.9E-10 6.4E-15 91.8 10.3 143 105-267 6-158 (196)
71 PF13098 Thioredoxin_2: Thiore 99.1 3.7E-10 7.9E-15 86.2 8.8 109 130-262 4-112 (112)
72 PRK10996 thioredoxin 2; Provis 99.1 1.1E-09 2.4E-14 87.4 11.8 89 130-266 51-139 (139)
73 cd03003 PDI_a_ERdj5_N PDIa fam 99.1 4.5E-10 9.7E-15 84.4 8.6 94 119-260 6-99 (101)
74 TIGR01126 pdi_dom protein disu 99.1 9E-10 2E-14 82.2 8.4 90 130-265 12-101 (102)
75 cd02949 TRX_NTR TRX domain, no 99.0 4.2E-09 9E-14 78.6 11.2 85 130-262 12-96 (97)
76 cd02994 PDI_a_TMX PDIa family, 99.0 2.3E-09 5E-14 80.4 9.7 86 129-263 15-100 (101)
77 cd03000 PDI_a_TMX3 PDIa family 99.0 4E-09 8.7E-14 79.7 10.4 89 130-264 14-102 (104)
78 cd02962 TMX2 TMX2 family; comp 99.0 5E-09 1.1E-13 84.8 11.4 80 130-250 46-125 (152)
79 cd03005 PDI_a_ERp46 PDIa famil 99.0 1.9E-09 4.1E-14 80.6 8.4 83 133-260 18-100 (102)
80 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 4.6E-09 1E-13 79.1 9.7 84 130-260 18-102 (104)
81 PHA02278 thioredoxin-like prot 99.0 7.1E-09 1.5E-13 78.5 10.4 87 130-260 13-99 (103)
82 cd03002 PDI_a_MPD1_like PDI fa 99.0 4.9E-09 1.1E-13 79.5 9.0 88 130-262 17-108 (109)
83 PLN00410 U5 snRNP protein, DIM 98.9 1.5E-08 3.4E-13 80.7 11.8 93 130-269 22-123 (142)
84 cd02997 PDI_a_PDIR PDIa family 98.9 3.8E-09 8.3E-14 79.2 7.8 88 130-261 16-103 (104)
85 TIGR01068 thioredoxin thioredo 98.9 1.4E-08 2.9E-13 75.4 10.7 88 131-266 14-101 (101)
86 cd02954 DIM1 Dim1 family; Dim1 98.9 5.8E-09 1.3E-13 80.1 8.8 88 130-265 13-110 (114)
87 COG3118 Thioredoxin domain-con 98.9 5E-09 1.1E-13 91.9 9.2 90 130-267 42-131 (304)
88 PTZ00443 Thioredoxin domain-co 98.9 1.4E-08 3.1E-13 87.3 11.6 92 130-269 51-142 (224)
89 cd02996 PDI_a_ERp44 PDIa famil 98.9 7.8E-09 1.7E-13 78.6 8.8 88 130-261 17-107 (108)
90 cd02993 PDI_a_APS_reductase PD 98.9 1E-08 2.2E-13 78.2 8.9 86 130-260 20-107 (109)
91 cd02959 ERp19 Endoplasmic reti 98.9 3.4E-09 7.5E-14 82.1 5.7 97 127-267 15-114 (117)
92 cd03006 PDI_a_EFP1_N PDIa fami 98.8 2.7E-08 5.8E-13 76.7 9.8 83 130-260 28-111 (113)
93 PF00085 Thioredoxin: Thioredo 98.8 5E-08 1.1E-12 72.6 10.9 87 131-265 17-103 (103)
94 cd02998 PDI_a_ERp38 PDIa famil 98.8 1.6E-08 3.5E-13 75.7 7.9 88 130-261 17-104 (105)
95 cd02984 TRX_PICOT TRX domain, 98.8 4.7E-08 1E-12 72.4 10.2 83 131-262 14-96 (97)
96 TIGR01295 PedC_BrcD bacterioci 98.8 1E-07 2.2E-12 74.4 11.5 94 130-260 22-118 (122)
97 KOG0854 Alkyl hydroperoxide re 98.8 8.5E-08 1.8E-12 77.7 11.2 149 105-265 8-167 (224)
98 KOG0907 Thioredoxin [Posttrans 98.8 6E-08 1.3E-12 73.8 9.6 85 130-264 20-104 (106)
99 PTZ00051 thioredoxin; Provisio 98.8 7.5E-08 1.6E-12 71.5 9.7 79 130-258 17-95 (98)
100 PRK00293 dipZ thiol:disulfide 98.7 4.3E-08 9.3E-13 95.4 10.0 95 127-265 470-569 (571)
101 cd02961 PDI_a_family Protein D 98.7 2.6E-08 5.6E-13 73.4 6.2 87 130-261 14-100 (101)
102 cd03065 PDI_b_Calsequestrin_N 98.7 1.7E-07 3.7E-12 72.9 10.6 90 131-266 27-119 (120)
103 cd03001 PDI_a_P5 PDIa family, 98.7 1.6E-07 3.4E-12 70.2 10.1 85 131-262 18-102 (103)
104 PF00255 GSHPx: Glutathione pe 98.7 3.3E-07 7.2E-12 69.8 11.2 81 113-198 3-88 (108)
105 cd02975 PfPDO_like_N Pyrococcu 98.7 3.8E-07 8.3E-12 70.1 11.3 87 131-267 22-111 (113)
106 PTZ00102 disulphide isomerase; 98.7 9.6E-08 2.1E-12 90.8 9.3 107 116-267 359-466 (477)
107 cd02955 SSP411 TRX domain, SSP 98.7 3.5E-07 7.5E-12 71.6 10.8 100 129-267 13-120 (124)
108 PTZ00102 disulphide isomerase; 98.6 5.5E-07 1.2E-11 85.7 13.4 106 116-267 34-139 (477)
109 cd02965 HyaE HyaE family; HyaE 98.6 6E-07 1.3E-11 68.6 10.5 82 130-259 26-109 (111)
110 cd02986 DLP Dim1 family, Dim1- 98.6 9.4E-07 2E-11 67.6 11.4 43 130-177 13-55 (114)
111 TIGR00411 redox_disulf_1 small 98.6 1.2E-06 2.6E-11 62.7 10.8 81 134-266 2-82 (82)
112 cd02947 TRX_family TRX family; 98.6 1.1E-06 2.5E-11 63.2 10.5 83 131-262 10-92 (93)
113 cd02992 PDI_a_QSOX PDIa family 98.6 4E-07 8.6E-12 70.1 8.4 44 131-176 19-62 (114)
114 cd02995 PDI_a_PDI_a'_C PDIa fa 98.5 4.1E-07 8.8E-12 68.0 7.9 45 130-177 17-61 (104)
115 PF00837 T4_deiodinase: Iodoth 98.5 8.7E-07 1.9E-11 75.9 10.3 135 105-264 75-235 (237)
116 cd02958 UAS UAS family; UAS is 98.5 2.6E-06 5.7E-11 65.4 11.5 95 129-268 15-113 (114)
117 cd02989 Phd_like_TxnDC9 Phosdu 98.5 4.5E-06 9.8E-11 64.2 12.2 71 130-249 21-91 (113)
118 TIGR02739 TraF type-F conjugat 98.5 1.6E-06 3.5E-11 75.8 10.8 106 126-269 145-251 (256)
119 PF13728 TraF: F plasmid trans 98.4 2.5E-06 5.4E-11 73.0 10.3 99 126-262 115-214 (215)
120 cd02957 Phd_like Phosducin (Ph 98.4 4.8E-06 1E-10 63.8 10.5 40 131-176 24-63 (113)
121 TIGR01130 ER_PDI_fam protein d 98.4 2.8E-06 6.1E-11 80.1 11.0 93 130-267 17-110 (462)
122 cd02952 TRP14_like Human TRX-r 98.4 1E-06 2.3E-11 68.3 6.6 44 130-178 20-70 (119)
123 PRK13703 conjugal pilus assemb 98.4 3.5E-06 7.5E-11 73.4 10.3 106 126-269 138-244 (248)
124 PTZ00062 glutaredoxin; Provisi 98.2 8.8E-06 1.9E-10 69.0 9.7 77 132-266 18-94 (204)
125 TIGR00424 APS_reduc 5'-adenyly 98.2 6.8E-06 1.5E-10 77.7 9.8 92 130-265 370-462 (463)
126 TIGR00412 redox_disulf_2 small 98.2 1.6E-05 3.6E-10 56.5 9.5 26 136-162 3-28 (76)
127 cd02982 PDI_b'_family Protein 98.2 8.4E-06 1.8E-10 60.9 8.4 90 131-265 12-102 (103)
128 cd02987 Phd_like_Phd Phosducin 98.2 2.4E-05 5.2E-10 64.9 10.6 41 131-177 83-123 (175)
129 TIGR02187 GlrX_arch Glutaredox 98.1 3.8E-05 8.2E-10 65.7 11.4 92 129-267 17-112 (215)
130 PLN02309 5'-adenylylsulfate re 98.1 2.5E-05 5.4E-10 73.9 10.9 91 130-265 364-456 (457)
131 cd03026 AhpF_NTD_C TRX-GRX-lik 98.0 6.3E-05 1.4E-09 55.3 9.6 45 127-177 8-52 (89)
132 PF14595 Thioredoxin_9: Thiore 98.0 5.4E-06 1.2E-10 65.3 3.9 80 127-251 37-116 (129)
133 cd02988 Phd_like_VIAF Phosduci 98.0 7E-05 1.5E-09 63.0 10.4 41 130-176 101-141 (192)
134 PF05176 ATP-synt_10: ATP10 pr 98.0 0.00013 2.9E-09 63.8 12.1 136 107-262 97-246 (252)
135 TIGR01130 ER_PDI_fam protein d 97.9 5.8E-05 1.3E-09 71.2 10.1 91 130-266 363-454 (462)
136 TIGR02187 GlrX_arch Glutaredox 97.9 0.0001 2.2E-09 63.0 10.2 84 129-264 131-214 (215)
137 cd02960 AGR Anterior Gradient 97.8 0.00014 3.1E-09 57.2 8.9 24 130-154 22-45 (130)
138 PHA02125 thioredoxin-like prot 97.8 0.00032 6.8E-09 49.6 9.5 22 135-157 2-23 (75)
139 smart00594 UAS UAS domain. 97.8 0.0004 8.7E-09 54.0 10.3 89 129-262 25-121 (122)
140 PF04592 SelP_N: Selenoprotein 97.7 0.00036 7.9E-09 59.6 9.5 120 112-254 11-131 (238)
141 COG0526 TrxA Thiol-disulfide i 97.6 0.00013 2.8E-09 53.9 5.8 49 124-177 25-73 (127)
142 cd02973 TRX_GRX_like Thioredox 97.6 0.00057 1.2E-08 46.8 8.6 38 134-177 2-39 (67)
143 KOG0908 Thioredoxin-like prote 97.6 0.00027 5.9E-09 60.8 8.2 91 127-267 17-107 (288)
144 PF13899 Thioredoxin_7: Thiore 97.3 0.00087 1.9E-08 48.1 6.4 24 130-154 16-39 (82)
145 cd01659 TRX_superfamily Thiore 97.3 0.0012 2.6E-08 43.0 6.6 38 135-178 1-38 (69)
146 COG0678 AHP1 Peroxiredoxin [Po 97.2 0.011 2.3E-07 47.3 11.4 130 105-249 5-145 (165)
147 COG4232 Thiol:disulfide interc 96.9 0.0021 4.5E-08 61.8 6.6 95 129-265 472-567 (569)
148 cd02991 UAS_ETEA UAS family, E 96.9 0.017 3.6E-07 44.6 10.4 47 208-268 66-115 (116)
149 KOG0190 Protein disulfide isom 96.9 0.003 6.6E-08 60.0 7.2 90 131-265 42-131 (493)
150 PF05988 DUF899: Bacterial pro 96.9 0.024 5.2E-07 48.0 11.8 120 112-251 47-174 (211)
151 TIGR02196 GlrX_YruB Glutaredox 96.8 0.014 3.1E-07 39.9 8.7 32 135-177 2-33 (74)
152 KOG1731 FAD-dependent sulfhydr 96.8 0.0028 6.1E-08 60.6 6.3 92 132-268 58-155 (606)
153 KOG0191 Thioredoxin/protein di 96.6 0.014 3E-07 54.3 9.4 90 130-267 46-135 (383)
154 PF09695 YtfJ_HI0045: Bacteria 96.6 0.029 6.3E-07 45.3 9.8 123 121-263 27-155 (160)
155 PRK11657 dsbG disulfide isomer 96.5 0.027 5.9E-07 49.4 10.5 118 130-263 116-249 (251)
156 cd03007 PDI_a_ERp29_N PDIa fam 96.5 0.028 6E-07 43.4 8.9 95 130-264 17-114 (116)
157 cd03023 DsbA_Com1_like DsbA fa 96.5 0.026 5.6E-07 44.6 9.1 121 130-262 4-153 (154)
158 PRK10877 protein disulfide iso 96.3 0.092 2E-06 45.5 12.4 28 130-158 106-133 (232)
159 cd03020 DsbA_DsbC_DsbG DsbA fa 96.3 0.064 1.4E-06 45.0 11.1 41 130-177 76-116 (197)
160 PRK11509 hydrogenase-1 operon 96.3 0.029 6.3E-07 44.2 8.3 76 147-268 51-126 (132)
161 KOG0912 Thiol-disulfide isomer 96.1 0.016 3.4E-07 51.6 6.4 94 131-267 13-107 (375)
162 COG4312 Uncharacterized protei 95.9 0.075 1.6E-06 45.1 9.1 127 112-250 53-198 (247)
163 PF13778 DUF4174: Domain of un 95.8 0.14 3E-06 39.5 9.7 107 126-264 3-110 (118)
164 PF03190 Thioredox_DsbH: Prote 95.6 0.12 2.7E-06 42.2 9.2 88 123-249 29-119 (163)
165 PF13192 Thioredoxin_3: Thiore 95.5 0.086 1.9E-06 37.1 7.3 23 139-162 6-28 (76)
166 COG2143 Thioredoxin-related pr 95.5 0.19 4.1E-06 40.6 9.7 101 129-263 40-146 (182)
167 PF06110 DUF953: Eukaryotic pr 95.5 0.044 9.5E-07 42.4 5.9 42 130-176 18-66 (119)
168 TIGR02200 GlrX_actino Glutared 95.1 0.05 1.1E-06 37.7 4.9 22 135-157 2-23 (77)
169 cd03019 DsbA_DsbA DsbA family, 94.9 0.16 3.5E-06 41.2 8.1 131 130-268 14-175 (178)
170 PRK11200 grxA glutaredoxin 1; 94.5 0.19 4.1E-06 36.0 6.8 38 135-178 3-40 (85)
171 KOG0190 Protein disulfide isom 94.3 0.049 1.1E-06 51.9 4.2 34 130-164 383-416 (493)
172 TIGR02180 GRX_euk Glutaredoxin 94.0 0.15 3.3E-06 35.9 5.3 23 135-158 1-23 (84)
173 PF11009 DUF2847: Protein of u 93.6 0.85 1.8E-05 34.5 8.9 86 130-258 18-104 (105)
174 KOG3425 Uncharacterized conser 93.4 0.24 5.2E-06 38.1 5.5 42 130-176 24-73 (128)
175 TIGR03143 AhpF_homolog putativ 93.2 0.85 1.8E-05 44.6 10.6 31 130-161 475-505 (555)
176 PF13911 AhpC-TSA_2: AhpC/TSA 92.8 0.95 2.1E-05 34.3 8.4 87 154-250 2-112 (115)
177 PRK10954 periplasmic protein d 92.6 0.56 1.2E-05 39.7 7.5 130 130-268 36-206 (207)
178 cd02977 ArsC_family Arsenate R 92.0 1.3 2.9E-05 33.0 8.1 48 136-194 2-49 (105)
179 KOG0541 Alkyl hydroperoxide re 91.8 1.7 3.6E-05 35.2 8.7 114 123-249 34-151 (171)
180 PF13462 Thioredoxin_4: Thiore 90.9 0.76 1.6E-05 36.5 6.2 50 124-176 5-54 (162)
181 cd02976 NrdH NrdH-redoxin (Nrd 90.4 0.72 1.6E-05 31.0 4.9 33 135-178 2-34 (73)
182 COG1651 DsbG Protein-disulfide 89.8 1.1 2.3E-05 38.7 6.6 59 118-179 71-129 (244)
183 PRK15317 alkyl hydroperoxide r 88.8 3.2 7E-05 40.1 9.7 32 128-160 113-144 (517)
184 KOG0191 Thioredoxin/protein di 88.4 1.6 3.5E-05 40.5 7.1 44 131-177 162-205 (383)
185 TIGR02183 GRXA Glutaredoxin, G 88.3 2.6 5.7E-05 30.2 6.8 37 135-177 2-38 (86)
186 cd03027 GRX_DEP Glutaredoxin ( 88.2 2.5 5.5E-05 29.0 6.4 31 136-177 4-34 (73)
187 cd02066 GRX_family Glutaredoxi 88.2 1.5 3.2E-05 29.2 5.1 22 135-157 2-23 (72)
188 cd03418 GRX_GRXb_1_3_like Glut 87.8 2.5 5.4E-05 29.0 6.2 45 135-193 2-46 (75)
189 PF00462 Glutaredoxin: Glutare 87.5 0.86 1.9E-05 30.1 3.5 32 135-177 1-32 (60)
190 cd03035 ArsC_Yffb Arsenate Red 86.9 1.8 3.9E-05 32.6 5.3 48 136-194 2-49 (105)
191 TIGR03140 AhpF alkyl hydropero 86.9 5.3 0.00012 38.6 9.9 32 128-160 114-145 (515)
192 PF06053 DUF929: Domain of unk 86.5 5.8 0.00012 34.7 8.9 33 130-163 57-89 (249)
193 cd03032 ArsC_Spx Arsenate Redu 86.2 2.3 5.1E-05 32.3 5.8 50 136-196 3-52 (115)
194 TIGR02181 GRX_bact Glutaredoxi 86.0 2.6 5.6E-05 29.4 5.5 20 136-156 2-21 (79)
195 cd03419 GRX_GRXh_1_2_like Glut 85.9 2.5 5.4E-05 29.4 5.4 22 135-157 2-23 (82)
196 TIGR01617 arsC_related transcr 85.0 2 4.3E-05 32.8 4.8 50 137-197 3-52 (117)
197 PRK01655 spxA transcriptional 85.0 2.2 4.8E-05 33.4 5.1 51 135-196 2-52 (131)
198 KOG4277 Uncharacterized conser 84.8 1.3 2.9E-05 39.6 4.1 33 132-165 44-76 (468)
199 cd03036 ArsC_like Arsenate Red 84.7 2.3 5E-05 32.2 5.0 48 137-195 3-50 (111)
200 PRK12559 transcriptional regul 83.8 3.6 7.8E-05 32.3 5.9 50 135-195 2-51 (131)
201 cd02972 DsbA_family DsbA famil 83.2 4.4 9.5E-05 28.5 5.8 38 135-177 1-38 (98)
202 PHA03050 glutaredoxin; Provisi 81.1 6.2 0.00013 29.8 6.1 22 135-157 15-36 (108)
203 PF06491 Disulph_isomer: Disul 80.1 7.3 0.00016 30.5 6.1 36 233-269 96-135 (136)
204 PRK10026 arsenate reductase; P 79.9 29 0.00062 27.6 11.1 50 135-195 4-53 (141)
205 PRK13344 spxA transcriptional 79.9 4.9 0.00011 31.5 5.4 51 136-197 3-53 (132)
206 PRK10638 glutaredoxin 3; Provi 78.4 11 0.00023 26.6 6.3 33 135-178 4-36 (83)
207 TIGR02189 GlrX-like_plant Glut 78.2 6.3 0.00014 29.2 5.3 23 132-156 8-30 (99)
208 PF02114 Phosducin: Phosducin; 77.9 34 0.00074 30.2 10.6 41 130-176 145-185 (265)
209 KOG0913 Thiol-disulfide isomer 77.1 0.69 1.5E-05 39.8 -0.3 46 130-178 39-84 (248)
210 KOG4614 Inner membrane protein 75.1 5.5 0.00012 34.4 4.6 31 232-262 247-277 (287)
211 COG4545 Glutaredoxin-related p 74.7 4.3 9.3E-05 28.7 3.2 43 136-192 5-47 (85)
212 TIGR00365 monothiol glutaredox 74.7 17 0.00037 26.7 6.7 26 130-156 10-39 (97)
213 TIGR03143 AhpF_homolog putativ 74.0 28 0.0006 34.1 9.9 31 127-158 362-392 (555)
214 COG1331 Highly conserved prote 73.9 13 0.00028 37.0 7.5 39 130-178 42-86 (667)
215 KOG4498 Uncharacterized conser 73.2 55 0.0012 27.5 10.0 55 117-175 35-91 (197)
216 cd02983 P5_C P5 family, C-term 72.8 11 0.00023 29.4 5.6 93 131-267 20-116 (130)
217 TIGR02194 GlrX_NrdH Glutaredox 72.3 5.9 0.00013 27.1 3.6 20 136-156 2-21 (72)
218 cd03028 GRX_PICOT_like Glutare 72.0 19 0.00042 25.9 6.4 26 130-156 6-35 (90)
219 PLN03098 LPA1 LOW PSII ACCUMUL 71.8 59 0.0013 31.0 11.0 61 113-178 278-338 (453)
220 KOG0911 Glutaredoxin-related p 71.1 1.9 4.2E-05 36.9 1.0 54 130-192 16-69 (227)
221 PRK07718 fliL flagellar basal 69.1 14 0.00029 29.4 5.4 28 60-87 2-29 (142)
222 KOG0914 Thioredoxin-like prote 67.8 9 0.0002 32.9 4.3 44 120-164 131-176 (265)
223 COG0695 GrxC Glutaredoxin and 67.7 24 0.00051 24.9 5.9 20 135-155 3-22 (80)
224 TIGR02190 GlrX-dom Glutaredoxi 66.1 13 0.00028 26.0 4.3 21 134-155 9-29 (79)
225 COG3054 Predicted transcriptio 65.6 15 0.00033 29.6 4.9 31 233-263 147-177 (184)
226 KOG2507 Ubiquitin regulatory p 64.7 34 0.00074 32.2 7.7 39 228-266 73-111 (506)
227 PRK10853 putative reductase; P 64.0 20 0.00043 27.5 5.3 49 135-194 2-50 (118)
228 cd03029 GRX_hybridPRX5 Glutare 63.9 29 0.00062 23.5 5.7 20 135-155 3-22 (72)
229 cd03073 PDI_b'_ERp72_ERp57 PDI 63.0 63 0.0014 24.3 9.1 30 233-263 78-108 (111)
230 TIGR00014 arsC arsenate reduct 63.0 23 0.00049 26.9 5.4 49 136-195 2-50 (114)
231 cd03034 ArsC_ArsC Arsenate Red 62.8 22 0.00048 26.8 5.3 49 136-195 2-50 (112)
232 KOG1752 Glutaredoxin and relat 62.1 27 0.00059 26.2 5.6 49 131-192 13-61 (104)
233 PRK10329 glutaredoxin-like pro 61.9 16 0.00036 25.8 4.2 32 135-177 3-34 (81)
234 cd03033 ArsC_15kD Arsenate Red 61.8 27 0.00059 26.5 5.6 48 136-194 3-50 (113)
235 TIGR01616 nitro_assoc nitrogen 59.9 34 0.00073 26.6 6.0 50 134-194 2-51 (126)
236 COG1393 ArsC Arsenate reductas 59.8 31 0.00067 26.5 5.7 55 135-200 3-57 (117)
237 KOG3363 Uncharacterized conser 56.7 51 0.0011 26.9 6.5 12 237-248 156-167 (196)
238 cd03072 PDI_b'_ERp44 PDIb' fam 56.7 31 0.00066 26.0 5.2 35 233-267 74-109 (111)
239 cd08344 MhqB_like_N N-terminal 56.4 45 0.00098 24.3 6.1 18 235-252 93-110 (112)
240 PF05768 DUF836: Glutaredoxin- 55.5 22 0.00047 25.0 3.9 36 135-177 2-37 (81)
241 PF12273 RCR: Chitin synthesis 55.1 12 0.00025 29.2 2.6 10 62-71 1-10 (130)
242 PF14155 DUF4307: Domain of un 53.5 16 0.00035 27.8 3.1 24 61-85 3-26 (112)
243 PRK12569 hypothetical protein; 52.8 79 0.0017 27.6 7.6 74 184-268 130-204 (245)
244 cd01820 PAF_acetylesterase_lik 52.4 1.4E+02 0.0029 24.9 10.1 50 129-179 88-139 (214)
245 PHA03075 glutaredoxin-like pro 51.8 1.1E+02 0.0024 23.6 8.1 30 132-162 2-31 (123)
246 PRK07021 fliL flagellar basal 50.1 54 0.0012 26.5 6.0 17 122-138 67-85 (162)
247 PRK01018 50S ribosomal protein 49.9 75 0.0016 23.4 6.2 44 168-211 32-75 (99)
248 PRK10714 undecaprenyl phosphat 48.8 96 0.0021 28.0 8.0 33 167-199 37-69 (325)
249 PRK05406 LamB/YcsF family prot 48.6 85 0.0018 27.5 7.1 74 184-268 127-203 (246)
250 PF12273 RCR: Chitin synthesis 45.6 15 0.00032 28.6 1.9 21 65-85 1-21 (130)
251 PF08806 Sep15_SelM: Sep15/Sel 44.1 35 0.00076 24.2 3.5 35 232-266 41-76 (78)
252 PF03960 ArsC: ArsC family; I 43.8 53 0.0011 24.5 4.7 52 138-200 1-52 (110)
253 PTZ00106 60S ribosomal protein 43.7 1.1E+02 0.0023 23.1 6.3 44 168-211 41-84 (108)
254 PF04375 HemX: HemX; InterPro 43.4 51 0.0011 30.6 5.4 10 75-84 41-50 (372)
255 PRK10824 glutaredoxin-4; Provi 42.5 1.1E+02 0.0024 23.4 6.2 27 130-157 13-43 (115)
256 cd01828 sialate_O-acetylestera 42.4 1.7E+02 0.0036 23.0 11.1 77 129-220 47-129 (169)
257 PF02563 Poly_export: Polysacc 42.4 30 0.00065 24.4 2.9 32 237-268 33-69 (82)
258 PF11760 CbiG_N: Cobalamin syn 42.0 68 0.0015 23.2 4.7 37 232-268 37-75 (84)
259 PF03746 LamB_YcsF: LamB/YcsF 41.4 73 0.0016 27.8 5.6 75 183-268 124-201 (242)
260 PF14654 Epiglycanin_C: Mucin, 41.2 63 0.0014 24.0 4.4 25 61-85 16-40 (106)
261 PF02526 GBP_repeat: Glycophor 41.0 4.3 9.3E-05 23.8 -1.3 29 240-268 4-32 (38)
262 PF02484 Rhabdo_NV: Rhabdoviru 40.5 37 0.0008 24.8 3.0 30 237-267 28-57 (111)
263 PTZ00062 glutaredoxin; Provisi 40.4 1.1E+02 0.0023 25.9 6.5 26 130-156 111-140 (204)
264 PF11303 DUF3105: Protein of u 40.1 32 0.0007 27.0 3.0 69 130-214 49-117 (130)
265 cd08357 Glo_EDI_BRP_like_18 Th 39.8 68 0.0015 23.5 4.8 15 234-248 108-122 (125)
266 PF13462 Thioredoxin_4: Thiore 39.6 39 0.00085 26.4 3.6 31 228-264 132-162 (162)
267 PF01106 NifU: NifU-like domai 39.5 50 0.0011 22.6 3.6 43 120-164 15-58 (68)
268 PRK05583 ribosomal protein L7A 39.1 1.4E+02 0.0031 22.2 6.3 40 168-208 33-72 (104)
269 TIGR03759 conj_TIGR03759 integ 39.0 1.2E+02 0.0025 25.7 6.2 51 134-196 111-161 (200)
270 PF13848 Thioredoxin_6: Thiore 38.7 87 0.0019 24.9 5.6 32 232-263 151-183 (184)
271 PF01788 PsbJ: PsbJ; InterPro 38.4 70 0.0015 19.6 3.5 25 60-84 5-29 (40)
272 TIGR01352 tonB_Cterm TonB fami 38.0 52 0.0011 22.0 3.6 33 236-268 15-48 (74)
273 cd02979 PHOX_C FAD-dependent P 37.3 2.2E+02 0.0048 23.0 9.6 48 112-162 5-56 (167)
274 cd04188 DPG_synthase DPG_synth 37.0 1.9E+02 0.0042 23.5 7.6 28 168-195 30-57 (211)
275 PRK13601 putative L7Ae-like ri 36.4 1.6E+02 0.0034 21.0 5.9 45 168-216 24-68 (82)
276 PRK10893 lipopolysaccharide ex 36.4 60 0.0013 27.2 4.3 9 112-120 41-49 (192)
277 cd03024 DsbA_FrnE DsbA family, 36.1 93 0.002 25.4 5.5 41 137-178 3-43 (201)
278 KOG1364 Predicted ubiquitin re 35.8 32 0.00069 31.5 2.6 42 227-268 149-191 (356)
279 PRK14583 hmsR N-glycosyltransf 35.5 1.6E+02 0.0034 27.8 7.5 42 152-193 88-129 (444)
280 TIGR00995 3a0901s06TIC22 chlor 35.5 75 0.0016 28.2 4.8 60 111-177 82-142 (270)
281 COG1167 ARO8 Transcriptional r 34.5 1.6E+02 0.0035 28.1 7.4 80 168-248 200-294 (459)
282 PF10281 Ish1: Putative stress 34.2 91 0.002 18.5 3.7 32 182-213 5-36 (38)
283 PRK15136 multidrug efflux syst 33.3 64 0.0014 30.0 4.4 12 232-243 240-251 (390)
284 PF02743 Cache_1: Cache domain 33.0 30 0.00064 24.0 1.7 18 233-250 53-70 (81)
285 PRK10856 cytoskeletal protein 32.9 62 0.0013 29.6 4.1 15 235-249 293-307 (331)
286 PLN02726 dolichyl-phosphate be 32.3 2.4E+02 0.0052 23.7 7.6 27 168-194 40-66 (243)
287 PF06764 DUF1223: Protein of u 32.2 3.1E+02 0.0067 23.1 10.2 35 137-178 4-38 (202)
288 PRK13254 cytochrome c-type bio 31.7 1.2E+02 0.0025 24.4 5.0 21 244-264 118-138 (148)
289 COG2237 Predicted membrane pro 31.5 1.2E+02 0.0025 28.2 5.5 49 151-200 50-104 (364)
290 PF11211 DUF2997: Protein of u 31.4 1.2E+02 0.0027 19.3 4.2 31 237-267 3-35 (48)
291 COG1580 FliL Flagellar basal b 30.7 1.3E+02 0.0029 24.4 5.3 20 132-151 79-98 (159)
292 PF12681 Glyoxalase_2: Glyoxal 30.4 1.5E+02 0.0032 20.9 5.2 16 233-248 92-107 (108)
293 PF03544 TonB_C: Gram-negative 30.1 23 0.00049 24.3 0.6 14 236-249 21-34 (79)
294 PRK02048 4-hydroxy-3-methylbut 29.7 2.4E+02 0.0053 28.0 7.6 39 137-176 515-557 (611)
295 PF09822 ABC_transp_aux: ABC-t 29.6 3.7E+02 0.0081 23.3 12.3 60 132-194 25-85 (271)
296 cd07238 Glo_EDI_BRP_like_5 Thi 29.5 2.1E+02 0.0046 20.4 6.4 16 234-249 94-109 (112)
297 PRK08564 5'-methylthioadenosin 29.3 4E+02 0.0087 23.5 12.0 70 145-220 136-208 (267)
298 PF12751 Vac7: Vacuolar segreg 29.0 1.4E+02 0.003 27.9 5.6 11 112-122 331-341 (387)
299 cd07233 Glyoxalase_I Glyoxalas 28.7 2.2E+02 0.0048 20.4 6.3 14 234-247 106-119 (121)
300 cd09011 Glo_EDI_BRP_like_23 Th 28.7 2.3E+02 0.005 20.6 6.3 16 234-249 102-117 (120)
301 PF05228 CHASE4: CHASE4 domain 28.5 57 0.0012 25.6 2.8 16 234-249 51-66 (161)
302 PTZ00260 dolichyl-phosphate be 28.5 4.4E+02 0.0096 23.8 13.5 26 168-193 107-132 (333)
303 cd07240 ED_TypeI_classII_N N-t 28.5 1.9E+02 0.0041 20.7 5.5 17 234-250 97-113 (117)
304 PHA02975 hypothetical protein; 28.4 99 0.0021 21.4 3.4 8 62-69 43-50 (69)
305 COG1512 Beta-propeller domains 28.3 2.3E+02 0.0049 25.2 6.7 41 149-193 46-86 (271)
306 KOG1420 Ca2+-activated K+ chan 27.8 1.2E+02 0.0026 30.1 5.1 21 114-134 109-129 (1103)
307 PF03967 PRCH: Photosynthetic 27.8 2.6E+02 0.0057 22.1 6.2 18 73-90 21-38 (136)
308 PRK10834 vancomycin high tempe 27.8 4.1E+02 0.0089 23.1 10.6 46 147-195 63-111 (239)
309 TIGR03171 soxL2 Rieske iron-su 27.3 77 0.0017 28.8 3.6 36 112-147 101-137 (321)
310 PRK08455 fliL flagellar basal 27.3 2.2E+02 0.0048 23.6 6.2 11 74-84 31-41 (182)
311 PRK12785 fliL flagellar basal 27.2 47 0.001 27.1 2.1 16 123-138 75-93 (166)
312 cd08364 FosX FosX, a fosfomyci 27.1 1.8E+02 0.0039 21.9 5.4 18 234-251 105-122 (131)
313 COG1540 Uncharacterized protei 27.0 2.2E+02 0.0048 24.8 6.1 71 187-268 130-203 (252)
314 cd04501 SGNH_hydrolase_like_4 26.9 3.2E+02 0.0069 21.6 9.8 76 129-221 58-144 (183)
315 PF04123 DUF373: Domain of unk 26.9 2.2E+02 0.0048 26.2 6.6 44 153-197 52-101 (344)
316 cd04196 GT_2_like_d Subfamily 26.9 3.3E+02 0.0071 21.7 8.1 48 153-200 12-59 (214)
317 PRK06683 hypothetical protein; 26.5 2.4E+02 0.0052 20.0 6.0 39 168-207 27-65 (82)
318 PF06018 CodY: CodY GAF-like d 26.4 1.3E+02 0.0027 25.0 4.5 27 234-260 36-63 (177)
319 PF00448 SRP54: SRP54-type pro 26.3 3.8E+02 0.0082 22.2 10.4 60 134-201 3-63 (196)
320 PF14567 SUKH_5: SMI1-KNR4 cel 26.1 1E+02 0.0022 24.2 3.7 57 183-247 39-108 (132)
321 cd07267 THT_Oxygenase_N N-term 26.1 2.1E+02 0.0046 20.7 5.5 16 235-250 94-109 (113)
322 PRK07714 hypothetical protein; 26.0 2.7E+02 0.0058 20.4 6.3 39 168-207 34-72 (100)
323 PRK13620 psbV cytochrome c-550 25.6 3.9 8.4E-05 34.6 -4.6 63 118-192 91-156 (215)
324 PF01323 DSBA: DSBA-like thior 25.3 1.1E+02 0.0025 24.5 4.2 41 134-178 1-41 (193)
325 PRK04101 fosfomycin resistance 25.3 1.7E+02 0.0037 22.3 5.0 23 233-255 101-123 (139)
326 cd07244 FosA FosA, a Fosfomyci 25.3 1.3E+02 0.0029 22.1 4.2 19 234-252 93-111 (121)
327 PF06781 UPF0233: Uncharacteri 25.2 1.9E+02 0.0041 21.0 4.7 8 73-80 39-46 (87)
328 TIGR03027 pepcterm_export puta 25.2 1.4E+02 0.003 24.1 4.5 33 236-268 22-59 (165)
329 PRK12726 flagellar biosynthesi 25.2 5.9E+02 0.013 24.1 10.0 73 131-212 205-278 (407)
330 PRK12759 bifunctional gluaredo 24.7 1.2E+02 0.0026 28.5 4.6 32 135-177 4-35 (410)
331 COG2761 FrnE Predicted dithiol 24.7 2.1E+02 0.0045 24.7 5.6 118 149-271 71-218 (225)
332 PF07423 DUF1510: Protein of u 24.6 55 0.0012 28.1 2.1 23 63-85 14-36 (217)
333 COG3322 Predicted periplasmic 24.5 1.1E+02 0.0023 27.6 4.0 16 235-250 106-121 (295)
334 PF04278 Tic22: Tic22-like fam 24.4 5E+02 0.011 23.0 11.6 59 111-177 75-136 (274)
335 cd07253 Glo_EDI_BRP_like_2 Thi 23.9 2E+02 0.0043 20.7 5.0 16 234-249 108-123 (125)
336 COG1393 ArsC Arsenate reductas 23.8 99 0.0021 23.7 3.2 43 174-216 5-52 (117)
337 cd06423 CESA_like CESA_like is 23.7 2.5E+02 0.0055 20.9 5.8 42 152-193 10-51 (180)
338 cd08351 ChaP_like ChaP, an enz 23.6 2.2E+02 0.0047 20.9 5.2 18 233-250 103-120 (123)
339 PRK11889 flhF flagellar biosyn 23.6 6.5E+02 0.014 24.0 11.1 70 133-211 242-312 (436)
340 cd03031 GRX_GRX_like Glutaredo 23.5 3.7E+02 0.0081 21.4 6.6 14 142-156 15-28 (147)
341 PTZ00152 cofilin/actin-depolym 23.4 53 0.0012 25.4 1.7 24 129-156 69-92 (122)
342 PF14269 Arylsulfotran_2: Aryl 23.4 95 0.002 27.9 3.5 27 226-252 155-184 (299)
343 cd07581 nitrilase_3 Uncharacte 23.3 2.2E+02 0.0047 24.2 5.7 43 204-249 63-107 (255)
344 cd08345 Fosfomycin_RP Fosfomyc 23.3 2.1E+02 0.0045 20.4 4.9 18 234-251 94-111 (113)
345 PF01295 Adenylate_cycl: Adeny 23.2 2.4E+02 0.0051 28.2 6.5 36 233-268 528-563 (604)
346 cd08362 BphC5-RrK37_N_like N-t 23.2 2.9E+02 0.0062 19.8 5.7 17 235-251 101-117 (120)
347 PF02966 DIM1: Mitosis protein 23.0 2.4E+02 0.0053 22.2 5.2 43 130-177 19-61 (133)
348 PLN03160 uncharacterized prote 23.0 1.2E+02 0.0026 25.9 3.9 11 30-40 4-14 (219)
349 PF11293 DUF3094: Protein of u 23.0 2.2E+02 0.0048 18.7 4.2 11 61-71 29-39 (55)
350 PF14427 Pput2613-deam: Pput_2 22.8 1.1E+02 0.0025 23.2 3.2 40 111-151 42-85 (118)
351 cd08348 BphC2-C3-RGP6_C_like T 22.4 2.7E+02 0.0059 20.6 5.6 17 234-250 103-119 (134)
352 PRK13602 putative ribosomal pr 22.4 2.9E+02 0.0063 19.5 6.3 40 168-208 27-66 (82)
353 cd08350 BLMT_like BLMT, a bleo 21.8 3.2E+02 0.007 19.8 5.9 17 233-249 101-117 (120)
354 cd07583 nitrilase_5 Uncharacte 21.3 2.6E+02 0.0056 23.7 5.8 42 204-249 63-107 (253)
355 COG3019 Predicted metal-bindin 21.0 4.4E+02 0.0095 21.1 8.6 21 134-155 27-47 (149)
356 cd07254 Glo_EDI_BRP_like_20 Th 21.0 2.7E+02 0.0059 20.1 5.2 16 234-249 100-115 (120)
357 COG1832 Predicted CoA-binding 20.9 2.8E+02 0.006 22.1 5.2 35 167-202 17-51 (140)
358 PF03259 Robl_LC7: Roadblock/L 20.7 1.2E+02 0.0026 21.0 3.0 33 233-265 15-48 (91)
359 COG3117 Uncharacterized protei 20.7 1.6E+02 0.0035 24.6 4.1 9 112-120 40-48 (188)
360 PF06953 ArsD: Arsenical resis 20.5 4.1E+02 0.0089 20.6 7.3 30 148-178 23-52 (123)
361 smart00102 ADF Actin depolymer 20.5 2.8E+02 0.0062 20.9 5.3 24 130-157 70-93 (127)
362 PHA03049 IMV membrane protein; 20.4 1.3E+02 0.0029 20.6 2.9 17 73-89 11-27 (68)
363 cd06442 DPM1_like DPM1_like re 20.4 4.6E+02 0.01 21.1 8.1 43 152-194 10-53 (224)
364 TIGR03521 GldG gliding-associa 20.3 8.2E+02 0.018 24.0 14.6 49 131-182 47-96 (552)
365 cd07245 Glo_EDI_BRP_like_9 Thi 20.2 3E+02 0.0066 19.0 5.2 14 234-247 100-113 (114)
366 PF05872 DUF853: Bacterial pro 20.1 4.5E+02 0.0097 25.5 7.2 83 131-217 253-340 (502)
No 1
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=100.00 E-value=5.6e-43 Score=295.46 Aligned_cols=210 Identities=35% Similarity=0.683 Sum_probs=177.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCCCCCCCCCCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEe
Q 042757 60 SRSWSTYVIPAGGLLGLAGIATFVHYNDERRAVRKGQGENSGPNRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFG 139 (271)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~ 139 (271)
+++.+|..+.++.+++++.+++|.+...++.... +........++|+|+++++|+|.|.+|+.++..||+|||+||||+
T Consensus 69 ~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~-e~~r~~~~~~~gk~~iGGpF~L~d~~Gk~~te~df~Gkw~LiYFG 147 (280)
T KOG2792|consen 69 PGPFSWRSLLATFALGLGLGGALAYLKKEKARLL-EKERESANRTAGKPAIGGPFSLVDHDGKRVTEKDFLGKWSLIYFG 147 (280)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhcCCCccCCceEEEecCCCeecccccccceEEEEec
Confidence 3666666665553444444444444433333321 111101225689999999999999999999999999999999999
Q ss_pred eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceee
Q 042757 140 YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFK 219 (271)
Q Consensus 140 at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~ 219 (271)
+|+||+|||.||..|.++.+++.++.+..+..||||+||+||+++.+++|+++|+|.+.+|||+.+++.+++++|+|||.
T Consensus 148 FThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~vak~yRVYfs 227 (280)
T KOG2792|consen 148 FTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQVAKKYRVYFS 227 (280)
T ss_pred ccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHHHHHhEEeec
Confidence 99999999999999999999999887767779999999999999999999999999999999999999999999999999
Q ss_pred e-eccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhhhc
Q 042757 220 K-VEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAS 270 (271)
Q Consensus 220 ~-~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~~~ 270 (271)
+ +.+.+++|.|+|+..+|||||+|+++..||.+.+.+++.+.|...+..+.
T Consensus 228 ~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~ 279 (280)
T KOG2792|consen 228 TGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYR 279 (280)
T ss_pred cCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhcc
Confidence 8 44558999999999999999999999999999999999999999888765
No 2
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=100.00 E-value=1.5e-33 Score=239.47 Aligned_cols=159 Identities=31% Similarity=0.618 Sum_probs=146.7
Q ss_pred cCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHH
Q 042757 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAY 189 (271)
Q Consensus 110 ~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~ 189 (271)
.+++|+|+|++|+.+++.+++|||+||+|+||+||++||.++..|.++++++.+..+.+|++++||+||++|||+.+++|
T Consensus 46 ~~g~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 46 IGGDFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred cCCceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 33489999999999999999999999999999999999999999999999999544579999999999999999999999
Q ss_pred HH-HcCCceeeecCCHHHHHHHHHHcCceeeeeccCC-CcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 190 LK-EFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEG-DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 190 ~~-~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~-~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
+. .+++.|.+++++.+.+++++++|+|++.+....+ .+|.++|+..+||||++|+++..+.+..+++++.++|+.+++
T Consensus 126 ~~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 126 AELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred hcccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 99 8899999999999999999999999987665433 589999999999999999999999877779999999999987
Q ss_pred h
Q 042757 268 K 268 (271)
Q Consensus 268 ~ 268 (271)
+
T Consensus 206 ~ 206 (207)
T COG1999 206 E 206 (207)
T ss_pred c
Confidence 4
No 3
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=100.00 E-value=2.7e-33 Score=232.26 Aligned_cols=144 Identities=33% Similarity=0.692 Sum_probs=129.9
Q ss_pred CCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHH
Q 042757 107 GPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHL 186 (271)
Q Consensus 107 ~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l 186 (271)
.+..+|+|+|+|++|+++++++++|||+||+|++|.||++||..+..|.++++.++++ +.++++|+||+||++|||+.+
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~DTp~~L 106 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPERDTPEVL 106 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTTC-HHHH
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCCCCHHHH
Confidence 3345689999999999999999999999999999999999999999999999999987 468999999999999999999
Q ss_pred HHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeecc--CCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 187 RAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEE--EGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~--~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
++|++.|+++|.+++++.++++++++.|++++.+... .+.+|.++|+..+|||||+|+|+..|..
T Consensus 107 ~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 107 KKYAKKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999999999999999999999999999987653 4577999999999999999999999864
No 4
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.96 E-value=8.2e-28 Score=192.13 Aligned_cols=141 Identities=40% Similarity=0.731 Sum_probs=126.6
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL 190 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~ 190 (271)
+|+|++.|.+|+++++.+++||++||+||++||+++|+.+++.|+++++++++++..++++++|++|+.+|+++.+++|+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~ 81 (142)
T cd02968 2 GPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYA 81 (142)
T ss_pred CCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHH
Confidence 49999999999999999999999999999999997899999999999999987532369999999999889999999999
Q ss_pred HHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 191 KEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
++++..|..+.++.+....++++||+.+.+.......+.+.|.+.+||||++|+|+++|.+
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~~ 142 (142)
T cd02968 82 KAFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYGG 142 (142)
T ss_pred HHhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeecC
Confidence 9999999999998777889999999998766433345778899999999999999998853
No 5
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.93 E-value=1.2e-24 Score=184.15 Aligned_cols=151 Identities=11% Similarity=0.092 Sum_probs=118.8
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC----CCCCCHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID----PQRDTPAHL 186 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD----p~~Dt~~~l 186 (271)
+|+|+++|.+|+.+++++++||++||+||+||||+ |..|+|.|++++++++++ ++++|+|++| ++.|+++.+
T Consensus 19 ~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~-C~~e~p~L~~l~~~~~~~---g~~vvgv~~~~~~~~e~d~~e~~ 94 (199)
T PTZ00056 19 IYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGL-TKKHVDQMNRLHSVFNPL---GLEILAFPTSQFLNQEFPNTKDI 94 (199)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCC-hHHHHHHHHHHHHHHhcC---ceEEEEecchhccCCCCCCHHHH
Confidence 49999999999999999999999999999999997 999999999999999854 5999999975 356789999
Q ss_pred HHHHHHcCCceeeecC-----C-HHH-HHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHH
Q 042757 187 RAYLKEFNSRIVGLTG-----P-VGA-IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 187 ~~~~~~~~~~~~~l~~-----~-~~~-~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
++|+++++..|+.+.+ . ... ...+.......+... +....+.+.+++||||++|+|+.++.+..+++++.
T Consensus 95 ~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~---~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~ 171 (199)
T PTZ00056 95 RKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDEN---GTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELE 171 (199)
T ss_pred HHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCccccccc---ccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHH
Confidence 9999999999988642 1 112 222222232222211 11112334467999999999999999989999999
Q ss_pred HHHHHHhhh
Q 042757 260 EEISKEMKK 268 (271)
Q Consensus 260 ~~i~~lL~~ 268 (271)
+.|+++|++
T Consensus 172 ~~I~~ll~~ 180 (199)
T PTZ00056 172 KKIAELLGV 180 (199)
T ss_pred HHHHHHHHH
Confidence 999999875
No 6
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.92 E-value=1.9e-24 Score=180.97 Aligned_cols=135 Identities=17% Similarity=0.147 Sum_probs=109.2
Q ss_pred CCCCCcCCCeEEEcCCC--CeeecCcC-CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCC
Q 042757 105 VTGPIIGGPFTLIDTEN--RLVTENNF-LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRD 181 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G--~~v~l~~~-~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D 181 (271)
+|.+. |+|++.|.+| +.++++++ +||+++|+||++|||+ |..++|.|.++++ .++++++|++| |
T Consensus 41 ~g~~~--p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~-C~~e~p~l~~l~~-------~~~~vi~v~~~---~ 107 (185)
T PRK15412 41 IGKPV--PKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSA-------QGIRVVGMNYK---D 107 (185)
T ss_pred cCCCC--CCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHH-------cCCEEEEEECC---C
Confidence 45555 9999999984 67777765 7999999999999997 9999999988754 25888999976 5
Q ss_pred CHHHHHHHHHHcCCceee-ecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 182 TPAHLRAYLKEFNSRIVG-LTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 182 t~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
+++.+++|+++++..|.. +.+.. ..++++||+ ...|++||||++|+|++++.+..+.+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~D~~---~~~~~~~gv--------------~~~P~t~vid~~G~i~~~~~G~~~~~~l~~ 170 (185)
T PRK15412 108 DRQKAISWLKELGNPYALSLFDGD---GMLGLDLGV--------------YGAPETFLIDGNGIIRYRHAGDLNPRVWES 170 (185)
T ss_pred CHHHHHHHHHHcCCCCceEEEcCC---ccHHHhcCC--------------CcCCeEEEECCCceEEEEEecCCCHHHHHH
Confidence 678889999999887764 43322 234555654 357899999999999999999999999999
Q ss_pred HHHHHhhhh
Q 042757 261 EISKEMKKA 269 (271)
Q Consensus 261 ~i~~lL~~~ 269 (271)
.|+.++++.
T Consensus 171 ~i~~~~~~~ 179 (185)
T PRK15412 171 EIKPLWEKY 179 (185)
T ss_pred HHHHHHHHH
Confidence 999999764
No 7
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.92 E-value=8.4e-25 Score=177.49 Aligned_cols=146 Identities=11% Similarity=0.117 Sum_probs=109.4
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHL 186 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l 186 (271)
.|+|+++|++|+++++++++||++||+||++||| |..|+|.|++++++++++ ++.+++|++|. +.|+++.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~--C~~e~p~l~~l~~~~~~~---~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG--FTPQYEGLEALYEKYKDR---GLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC--chHHHHHHHHHHHHhcCC---CEEEEEeccCccccCCCCCHHHH
Confidence 4899999999999999999999999999999998 999999999999999753 69999999874 34788999
Q ss_pred HHHHHH-cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 187 RAYLKE-FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 187 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
++|+++ ++..|+.+.+.........+.|++.....+.. ..+.+.|.+++||||++|+|++++.+..+.++++++|
T Consensus 77 ~~f~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~i 152 (152)
T cd00340 77 KEFCETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGL-LGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKDI 152 (152)
T ss_pred HHHHHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCC-CCCccccccEEEEECCCCcEEEEECCCCCHHHHHhcC
Confidence 999987 78888877531000001122333211000000 0123445678999999999999999988888876543
No 8
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.92 E-value=3.7e-24 Score=184.58 Aligned_cols=155 Identities=11% Similarity=0.147 Sum_probs=118.0
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CC
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QR 180 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~ 180 (271)
.+..+ |+|+++|.+|+.+++++++||++||+||++|||+ |..|+|.|++++++++++ ++++|+|++|. +.
T Consensus 75 ~g~~a--PdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~-c~~e~p~L~~L~~~~~~~---Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 75 TEKSV--HDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGL-TSSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQEP 148 (236)
T ss_pred cCCCC--CceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcc-hHHHHHHHHHHHHHHhcC---CcEEEEEecccccccCC
Confidence 44444 9999999999999999999999999999999997 999999999999999854 59999999864 24
Q ss_pred CCHHHHHHHH-HHcCCceeeecC-CHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHH
Q 042757 181 DTPAHLRAYL-KEFNSRIVGLTG-PVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEEL 258 (271)
Q Consensus 181 Dt~~~l~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l 258 (271)
|+.+.+++|+ ++++..|+.+.. +.+ -...+..|++........ ....+.+.|++||||++|+|+.+|.+..+++++
T Consensus 149 ~s~~ei~~f~~~~~g~~fPvl~~~D~~-G~~~~~~y~~l~~~~~~~-~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~l 226 (236)
T PLN02399 149 GSNPEIKQFACTRFKAEFPIFDKVDVN-GPSTAPVYQFLKSNAGGF-LGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQI 226 (236)
T ss_pred CCHHHHHHHHHHhcCCCCccccccCCC-cchhhHHHHHHHHhcCCc-cCCccccCceEEEECCCCcEEEEECCCCCHHHH
Confidence 6788899998 678888887642 211 011223332210000000 011245678999999999999999999999999
Q ss_pred HHHHHHHhh
Q 042757 259 AEEISKEMK 267 (271)
Q Consensus 259 ~~~i~~lL~ 267 (271)
+++|+++|+
T Consensus 227 e~~I~~lL~ 235 (236)
T PLN02399 227 EKDIQKLLA 235 (236)
T ss_pred HHHHHHHhc
Confidence 999999986
No 9
>PLN02412 probable glutathione peroxidase
Probab=99.91 E-value=8.7e-24 Score=174.22 Aligned_cols=153 Identities=11% Similarity=0.124 Sum_probs=116.2
Q ss_pred CCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCC----CCCH
Q 042757 108 PIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ----RDTP 183 (271)
Q Consensus 108 ~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~----~Dt~ 183 (271)
|..+|+|+++|.+|+.+++++++||++||+||++|||. |..+++.|++++++++++ ++.+++|+.|+. .|+.
T Consensus 6 ~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~-c~~e~~~l~~l~~~~~~~---g~~vvgv~~~~~~~~~~~~~ 81 (167)
T PLN02412 6 PKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGL-TDSNYKELNVLYEKYKEQ---GFEILAFPCNQFLGQEPGSN 81 (167)
T ss_pred CCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCC-hHHHHHHHHHHHHHHhhC---CcEEEEecccccccCCCCCH
Confidence 34569999999999999999999999999999999996 999999999999999864 699999998752 3566
Q ss_pred HHHHHH-HHHcCCceeeecC-CHHHHHHHHHHcCceeeeeccCCCc--ceeecceeEEEEcCCCeEEEEecCCCCHHHHH
Q 042757 184 AHLRAY-LKEFNSRIVGLTG-PVGAIRQMAQEYRVFFKKVEEEGDD--YLVESSHNMYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 184 ~~l~~~-~~~~~~~~~~l~~-~~~~~~~~~~~~gv~~~~~~~~~~~--y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
+.+.++ .++++..|+.+.. +.+. ...+..|++.-.. .+.. ..+...|++||||++|+|+.++.+..+++++.
T Consensus 82 ~~~~~~~~~~~~~~fpvl~~~d~~g-~~~~~~~~~~~~~---~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~ 157 (167)
T PLN02412 82 EEIQQTVCTRFKAEFPIFDKVDVNG-KNTAPLYKYLKAE---KGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIE 157 (167)
T ss_pred HHHHHHHHHccCCCCceEeEEeeCC-CCCCHHHHHHHhh---CCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHH
Confidence 666554 6888888887742 1110 0122333321110 0111 12344688999999999999999999999999
Q ss_pred HHHHHHhhh
Q 042757 260 EEISKEMKK 268 (271)
Q Consensus 260 ~~i~~lL~~ 268 (271)
+.|+++|++
T Consensus 158 ~~i~~~l~~ 166 (167)
T PLN02412 158 KDIQNLLGQ 166 (167)
T ss_pred HHHHHHHhh
Confidence 999999875
No 10
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.90 E-value=5.5e-23 Score=166.96 Aligned_cols=139 Identities=15% Similarity=0.185 Sum_probs=107.8
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHLR 187 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l~ 187 (271)
=+|+++|++|+++++++++||++||+||++|||+ |..++|.|++++++++++ ++.+++|+.+. +.|+++.++
T Consensus 3 ~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~-c~~~~~~l~~l~~~~~~~---~~~v~~i~~~~~~~~~~d~~~~~~ 78 (153)
T TIGR02540 3 YSFEVKDARGRTVSLEKYRGKVSLVVNVASECGF-TDQNYRALQELHRELGPS---HFNVLAFPCNQFGESEPDSSKEIE 78 (153)
T ss_pred ccceeECCCCCEecHHHhCCCEEEEEEeCCCCCc-hhhhHHHHHHHHHHHhhC---CeEEEEEeccccccCCCCCHHHHH
Confidence 3799999999999999999999999999999997 999999999999999864 69999998632 247889999
Q ss_pred HHHHH-cCCceeeecCC---HHHHHHHHHHcCceeeeeccCCCcceeeccee----EEEEcCCCeEEEEecCCCCHHHHH
Q 042757 188 AYLKE-FNSRIVGLTGP---VGAIRQMAQEYRVFFKKVEEEGDDYLVESSHN----MYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 188 ~~~~~-~~~~~~~l~~~---~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~----~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
+|+++ ++..|+.+.+. .... ..+..|.+.. ....|. +||||++|+|+..+.+..+++++.
T Consensus 79 ~f~~~~~~~~fp~~~d~~~~~~~~-~~~~~~~~~~-----------~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~ 146 (153)
T TIGR02540 79 SFARRNYGVTFPMFSKIKILGSEA-EPAFRFLVDS-----------SKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIR 146 (153)
T ss_pred HHHHHhcCCCCCccceEecCCCCC-CcHHHHHHhc-----------CCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHH
Confidence 99986 78888776420 0000 0011111100 001344 899999999999999999999999
Q ss_pred HHHHHHh
Q 042757 260 EEISKEM 266 (271)
Q Consensus 260 ~~i~~lL 266 (271)
++|+++|
T Consensus 147 ~~i~~l~ 153 (153)
T TIGR02540 147 PEITALV 153 (153)
T ss_pred HHHHHhC
Confidence 9998875
No 11
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.90 E-value=5e-22 Score=163.84 Aligned_cols=132 Identities=21% Similarity=0.247 Sum_probs=112.8
Q ss_pred cCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHH
Q 042757 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAY 189 (271)
Q Consensus 110 ~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~ 189 (271)
.+|+|++.+.+|+.+++++++||+++|+||++||+. |..+++.|+++++++.+. ++++++|+.| ++.+.+++|
T Consensus 40 ~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~-C~~~~~~l~~~~~~~~~~---~~~vi~i~~d---~~~~~~~~~ 112 (173)
T PRK03147 40 EAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP-CEKEMPYMNELYPKYKEK---GVEIIAVNVD---ETELAVKNF 112 (173)
T ss_pred CCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC---CeEEEEEEcC---CCHHHHHHH
Confidence 349999999999999999999999999999999996 999999999999999853 5899999988 467889999
Q ss_pred HHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHH
Q 042757 190 LKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
.++++.+|..+.+.. ..+.+.|++. +.|.+|+||++|+|+..+.+..+.+++.+.++++
T Consensus 113 ~~~~~~~~~~~~d~~---~~~~~~~~v~--------------~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 113 VNRYGLTFPVAIDKG---RQVIDAYGVG--------------PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred HHHhCCCceEEECCc---chHHHHcCCC--------------CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999888876543 4566677653 4788999999999999998888888877766643
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.90 E-value=2.6e-22 Score=162.91 Aligned_cols=139 Identities=19% Similarity=0.220 Sum_probs=110.6
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPA 184 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~ 184 (271)
.|.++ |+|+++|.+|+.+++++++||++||+||++||.+.|+.+++.|++++++++++ ++++|+|++| +++
T Consensus 6 ~g~~~--p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~---~v~vi~Is~d----~~~ 76 (154)
T PRK09437 6 AGDIA--PKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA---GVVVLGISTD----KPE 76 (154)
T ss_pred CCCcC--CCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC---CCEEEEEcCC----CHH
Confidence 44444 99999999999999999999999999999865556999999999999999864 6899999875 679
Q ss_pred HHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHH
Q 042757 185 HLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEE 257 (271)
Q Consensus 185 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~ 257 (271)
.+++|+++++..|..+.+.. +.++++||+.+.+.. .+..|...| +++||||++|+|++.|.+....+.
T Consensus 77 ~~~~~~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~-~~~~~~~~~-~~~~lid~~G~i~~~~~g~~~~~~ 144 (154)
T PRK09437 77 KLSRFAEKELLNFTLLSDED---HQVAEQFGVWGEKKF-MGKTYDGIH-RISFLIDADGKIEHVFDKFKTSNH 144 (154)
T ss_pred HHHHHHHHhCCCCeEEECCC---chHHHHhCCCccccc-ccccccCcc-eEEEEECCCCEEEEEEcCCCcchh
Confidence 99999999999999998643 567889998765432 122232222 578999999999999966433333
No 13
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.89 E-value=5.4e-22 Score=164.41 Aligned_cols=134 Identities=16% Similarity=0.200 Sum_probs=106.6
Q ss_pred CCCCCCcCCCeEEEcCCCC--eeecCcC-CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC
Q 042757 104 RVTGPIIGGPFTLIDTENR--LVTENNF-LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR 180 (271)
Q Consensus 104 ~~~~~~~~p~f~l~d~~G~--~v~l~~~-~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~ 180 (271)
.+|.++ |+|+++|.+|+ .++++++ +||+++|+||++|||+ |..++|.++++++ .++.+++|+.|
T Consensus 35 ~vG~~a--p~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~-------~~~~vi~V~~~--- 101 (173)
T TIGR00385 35 LIGKPV--PAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPP-CRAEHPYLNELAK-------DGLPIVGVDYK--- 101 (173)
T ss_pred hcCCCC--CCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHH-HHHHHHHHHHHHH-------cCCEEEEEECC---
Confidence 356655 99999999997 4555665 7999999999999997 9999999988764 25888999875
Q ss_pred CCHHHHHHHHHHcCCceee-ecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHH
Q 042757 181 DTPAHLRAYLKEFNSRIVG-LTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 181 Dt~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
++.+..++|+++++..|.. +.+.. ..++++|++. ..|++|+||++|+|++.+.+..+.+++.
T Consensus 102 ~~~~~~~~~~~~~~~~f~~v~~D~~---~~~~~~~~v~--------------~~P~~~~id~~G~i~~~~~G~~~~~~l~ 164 (173)
T TIGR00385 102 DQSQNALKFLKELGNPYQAILIDPN---GKLGLDLGVY--------------GAPETFLVDGNGVILYRHAGPLNNEVWT 164 (173)
T ss_pred CChHHHHHHHHHcCCCCceEEECCC---CchHHhcCCe--------------eCCeEEEEcCCceEEEEEeccCCHHHHH
Confidence 4567778899999887753 33322 3455666653 4688999999999999998889999999
Q ss_pred HHHHHHhh
Q 042757 260 EEISKEMK 267 (271)
Q Consensus 260 ~~i~~lL~ 267 (271)
+.|.+++.
T Consensus 165 ~~l~~~~~ 172 (173)
T TIGR00385 165 EGFLPAME 172 (173)
T ss_pred HHHHHHhh
Confidence 99998875
No 14
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.89 E-value=9.8e-22 Score=161.99 Aligned_cols=126 Identities=14% Similarity=0.162 Sum_probs=102.4
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCC-CCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTS-SPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~-Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
+|.++ |+|++.|.+|+.+++++++||++||+||++| ||+ |..|++.|+++++++. ++++++||.| ++
T Consensus 20 ~G~~~--P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~-C~~e~~~l~~~~~~~~-----~~~vv~vs~D----~~ 87 (167)
T PRK00522 20 VGDKA--PDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGV-CATSVRKFNQEAAELD-----NTVVLCISAD----LP 87 (167)
T ss_pred CCCCC--CCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCc-cHHHHHHHHHHHHHcC-----CcEEEEEeCC----CH
Confidence 55555 9999999999999999999999999999999 775 9999999999988872 5899999976 56
Q ss_pred HHHHHHHHHcCCc-eeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 184 AHLRAYLKEFNSR-IVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 184 ~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
+.+++|+++++.. +..+.+..+ +.+++.||+...+... .++ ..+++||||++|+|++.+
T Consensus 88 ~~~~~f~~~~~~~~~~~lsD~~~--~~~~~~~gv~~~~~~~----~g~-~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 88 FAQKRFCGAEGLENVITLSDFRD--HSFGKAYGVAIAEGPL----KGL-LARAVFVLDENNKVVYSE 147 (167)
T ss_pred HHHHHHHHhCCCCCceEeecCCc--cHHHHHhCCeeccccc----CCc-eeeEEEEECCCCeEEEEE
Confidence 7889999999875 677766332 4678999987543111 111 357899999999999987
No 15
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.88 E-value=3e-21 Score=162.18 Aligned_cols=130 Identities=17% Similarity=0.113 Sum_probs=96.7
Q ss_pred CCCCCCCcCCCeEEEcCCCCeeecC--cCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC
Q 042757 103 NRVTGPIIGGPFTLIDTENRLVTEN--NFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR 180 (271)
Q Consensus 103 ~~~~~~~~~p~f~l~d~~G~~v~l~--~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~ 180 (271)
..+|.++ |+|+++|.+|+.++++ +++||+++|+||++|||. |+.++|.+++++++. ++.+++|+.
T Consensus 46 ~~vG~~a--P~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~-C~~~lp~l~~~~~~~------~~~vv~Is~---- 112 (189)
T TIGR02661 46 PDVGDAA--PIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPV-CDKLFPIIKSIARAE------ETDVVMISD---- 112 (189)
T ss_pred CCCCCcC--CCcEecCCCCCEEeccchhcCCCEEEEEEECCCChh-HHHHHHHHHHHHHhc------CCcEEEEeC----
Confidence 3455554 9999999999999994 579999999999999996 999999999987643 366788883
Q ss_pred CCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 181 DTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 181 Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
|+++.+++|+++++.++..+..+ .++++.|++ ...|.+|+||++|+|++... .-..+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~y~v--------------~~~P~~~lID~~G~I~~~g~-~~~~~~le~ 173 (189)
T TIGR02661 113 GTPAEHRRFLKDHELGGERYVVS----AEIGMAFQV--------------GKIPYGVLLDQDGKIRAKGL-TNTREHLES 173 (189)
T ss_pred CCHHHHHHHHHhcCCCcceeech----hHHHHhccC--------------CccceEEEECCCCeEEEccC-CCCHHHHHH
Confidence 46788999999998665433322 345566654 35788899999999997632 223344444
Q ss_pred HHHH
Q 042757 261 EISK 264 (271)
Q Consensus 261 ~i~~ 264 (271)
.|++
T Consensus 174 ll~~ 177 (189)
T TIGR02661 174 LLEA 177 (189)
T ss_pred HHHH
Confidence 4443
No 16
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.88 E-value=8.7e-22 Score=162.68 Aligned_cols=138 Identities=15% Similarity=0.221 Sum_probs=117.9
Q ss_pred CCCeEEEcCCCCeeecCcC-CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC----CCHHH
Q 042757 111 GGPFTLIDTENRLVTENNF-LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR----DTPAH 185 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~-~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~----Dt~~~ 185 (271)
+|+|++.|.+|++++++++ +||++||+||++|||. |..+++.|+++++++.+ .++.+|+|++|+.. |+++.
T Consensus 4 ~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~-c~~~~~~l~~l~~~~~~---~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 4 APDFSLPDTDGKTYSLADFADGKALVVMFICNHCPY-VKAIEDRLNRLAKEYGA---KGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHHhh---CCeEEEEEecCccccccccCHHH
Confidence 4999999999999999998 9999999999999996 99999999999999975 36999999999853 78999
Q ss_pred HHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec---------CCCCHH
Q 042757 186 LRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG---------VEYTAE 256 (271)
Q Consensus 186 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~---------~~~~~~ 256 (271)
+++|+++++..|+.+.+.. ..+++.||+. +.|.+||||++|+|++... ...+.+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~---~~~~~~~~v~--------------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~ 142 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDET---QEVAKAYGAA--------------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGR 142 (171)
T ss_pred HHHHHHHCCCCceEEECCc---hHHHHHcCCC--------------cCCcEEEECCCCeEEEeecccCCcccccccccHH
Confidence 9999999999999888654 3567788764 3678899999999998752 234568
Q ss_pred HHHHHHHHHhhhh
Q 042757 257 ELAEEISKEMKKA 269 (271)
Q Consensus 257 ~l~~~i~~lL~~~ 269 (271)
++.+.|+.+|...
T Consensus 143 ~~~~~i~~~l~~~ 155 (171)
T cd02969 143 DLRAALDALLAGK 155 (171)
T ss_pred HHHHHHHHHHcCC
Confidence 8999999988753
No 17
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.88 E-value=2.6e-21 Score=161.79 Aligned_cols=148 Identities=14% Similarity=0.171 Sum_probs=109.5
Q ss_pred cCCCeEEEcCCCCeeecCcCCCCEE-EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHH
Q 042757 110 IGGPFTLIDTENRLVTENNFLGNWV-LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPA 184 (271)
Q Consensus 110 ~~p~f~l~d~~G~~v~l~~~~Gk~v-ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~ 184 (271)
..|+|+++|.+|+++++++++||++ |+.||+||||+ |..|+|.|++++++++++ ++.+|+|++|. +.++.+
T Consensus 19 ~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~-C~~e~p~l~~l~~~~~~~---gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 19 SFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGL-TSDHYTQLVELYKQYKSQ---GLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred cccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCc-hHHHHHHHHHHHHHHhhC---CcEEEEEecccccccCCCCHH
Confidence 3499999999999999999999964 55669999997 999999999999999854 59999999752 334668
Q ss_pred HHHHHHH-HcCCceeeecC---CH---HHHHHHH-HHcCceeeeeccCCCcceeecce---eEEEEcCCCeEEEEecCCC
Q 042757 185 HLRAYLK-EFNSRIVGLTG---PV---GAIRQMA-QEYRVFFKKVEEEGDDYLVESSH---NMYLMNPSLEVVRCFGVEY 253 (271)
Q Consensus 185 ~l~~~~~-~~~~~~~~l~~---~~---~~~~~~~-~~~gv~~~~~~~~~~~y~v~~~p---~~~lID~~G~iv~~~~~~~ 253 (271)
.+++|+. +++..|+.+.+ +. ..+..+. .+.+.+.. ..+.+...| ++||||++|+|+.++.+..
T Consensus 95 ~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~------~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~ 168 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQN------NTNEARQIPWNFAKFLIDGQGKVVKYFSPKV 168 (183)
T ss_pred HHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcC------ccccCcccCcceEEEEECCCCCEEEEECCCC
Confidence 8889975 77877776632 11 1121111 11111100 112233344 5799999999999999899
Q ss_pred CHHHHHHHHHHHhh
Q 042757 254 TAEELAEEISKEMK 267 (271)
Q Consensus 254 ~~~~l~~~i~~lL~ 267 (271)
+.+.+.+.|+++|+
T Consensus 169 ~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 169 NPNEMIQDIEKLLN 182 (183)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999886
No 18
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.6e-21 Score=154.24 Aligned_cols=149 Identities=17% Similarity=0.265 Sum_probs=118.1
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPA 184 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~ 184 (271)
+|.++ |+|+|++++|++++|++++||+|||||+.-.-.+.|..|+..+++.+.++++. ++.+++||.| +++
T Consensus 6 ~G~~a--PdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~---~a~V~GIS~D----s~~ 76 (157)
T COG1225 6 VGDKA--PDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKL---GAVVLGISPD----SPK 76 (157)
T ss_pred CCCcC--CCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhC---CCEEEEEeCC----CHH
Confidence 55555 99999999999999999999999999988766667999999999999999964 6899999975 789
Q ss_pred HHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 185 HLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 185 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
.+++|.++++..|+.|++... +++++||+...+.. .|..| .-..+.+||||++|+|++.+ ...+++.-.+++.+
T Consensus 77 ~~~~F~~k~~L~f~LLSD~~~---~v~~~ygv~~~k~~-~gk~~-~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~~vl~ 150 (157)
T COG1225 77 SHKKFAEKHGLTFPLLSDEDG---EVAEAYGVWGEKKM-YGKEY-MGIERSTFVIDPDGKIRYVW-RKVKVKGHADEVLA 150 (157)
T ss_pred HHHHHHHHhCCCceeeECCcH---HHHHHhCccccccc-Ccccc-ccccceEEEECCCCeEEEEe-cCCCCcccHHHHHH
Confidence 999999999999999987654 48899999764332 12222 23468899999999999999 44444444444444
Q ss_pred Hhhh
Q 042757 265 EMKK 268 (271)
Q Consensus 265 lL~~ 268 (271)
.|++
T Consensus 151 ~l~~ 154 (157)
T COG1225 151 ALKK 154 (157)
T ss_pred HHHH
Confidence 4443
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.87 E-value=1.3e-21 Score=157.29 Aligned_cols=131 Identities=18% Similarity=0.229 Sum_probs=105.6
Q ss_pred CCCCcCCCeEEEc--CCCCeeecCcCCCCEEEEEEeeC-CCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCC
Q 042757 106 TGPIIGGPFTLID--TENRLVTENNFLGNWVLLYFGYT-SSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDT 182 (271)
Q Consensus 106 ~~~~~~p~f~l~d--~~G~~v~l~~~~Gk~vll~F~at-~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt 182 (271)
|.++ |+|++++ .+|+++++++++||++||+||++ |||+ |..++|.|+++++.++++ ++.+++|+.+. .
T Consensus 3 G~~~--P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~-C~~~~p~l~~l~~~~~~~---~v~~v~v~~~~---~ 73 (146)
T PF08534_consen 3 GDKA--PDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPP-CRKELPYLNELQEKYKDK---GVDVVGVSSDD---D 73 (146)
T ss_dssp TSB----CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TCEEEEEEESS---S
T ss_pred CCCC--CCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCc-chhhhhhHHhhhhhhccC---ceEEEEecccC---C
Confidence 4444 9999966 99999999999999999999999 9997 999999999999988754 68999999874 3
Q ss_pred HHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCC
Q 042757 183 PAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYT 254 (271)
Q Consensus 183 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~ 254 (271)
+. +++|+++++.+|+.+.+.. ..++++|++.+......+ ...|++||||++|+|++.+.+..+
T Consensus 74 ~~-~~~~~~~~~~~~~~~~D~~---~~~~~~~~~~~~~~~~~~-----~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 PP-VREFLKKYGINFPVLSDPD---GALAKALGVTIMEDPGNG-----FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HH-HHHHHHHTTTTSEEEEETT---SHHHHHTTCEEECCTTTT-----SSSSEEEEEETTSBEEEEEESSBT
T ss_pred HH-HHHHHHhhCCCceEEechH---HHHHHHhCCccccccccC-----CeecEEEEEECCCEEEEEEeCCCC
Confidence 33 9999999999999887632 467889998754432222 247999999999999999865544
No 20
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.87 E-value=1.9e-21 Score=154.81 Aligned_cols=136 Identities=18% Similarity=0.243 Sum_probs=112.2
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEee-CCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGY-TSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAY 189 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~a-t~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~ 189 (271)
+|+|+++|.+|+.+++++++||++||+||+ +||| .|+.+++.|+++++++.++ ++++|+|++| +++.+++|
T Consensus 3 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp-~C~~~~~~l~~~~~~~~~~---~~~vv~is~d----~~~~~~~~ 74 (140)
T cd03017 3 APDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTP-GCTKEACDFRDLYEEFKAL---GAVVIGVSPD----SVESHAKF 74 (140)
T ss_pred CCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCC-chHHHHHHHHHHHHHHHHC---CCEEEEEcCC----CHHHHHHH
Confidence 499999999999999999999999999995 7787 4999999999999999753 6899999975 67899999
Q ss_pred HHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 190 LKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
+++++.+|..+.+.. ..+++.||+...+.+..+ ...|.+||||++|+|++.+.+....+.+.+.+
T Consensus 75 ~~~~~~~~~~l~D~~---~~~~~~~gv~~~~~~~~~-----~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 75 AEKYGLPFPLLSDPD---GKLAKAYGVWGEKKKKYM-----GIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHhCCCceEEECCc---cHHHHHhCCccccccccC-----CcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 999999999887653 467889998876432111 12478999999999999997766666665544
No 21
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.87 E-value=3.6e-21 Score=154.92 Aligned_cols=125 Identities=17% Similarity=0.244 Sum_probs=104.6
Q ss_pred CCCeEEEcCCCCeeecCcCCC-CEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLG-NWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRA 188 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~G-k~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~ 188 (271)
+|+|++.|.+|+.+++++++| |+++|+|| ++|||. |+.+++.|+++++++++. ++++++|+.| +++.+++
T Consensus 7 ~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~v~vi~vs~d----~~~~~~~ 78 (149)
T cd03018 7 APDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAA---GAEVLGISVD----SPFSLRA 78 (149)
T ss_pred CCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhC---CCEEEEecCC----CHHHHHH
Confidence 399999999999999999999 99999888 899986 999999999999999853 6899999976 5788999
Q ss_pred HHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC
Q 042757 189 YLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE 252 (271)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~ 252 (271)
|+++++..|+.+.+... ...+++.||+.+.+. + .+.|++||||++|+|++.+.+.
T Consensus 79 ~~~~~~~~~~~~~D~~~-~~~~~~~~g~~~~~~-------~-~~~~~~~lid~~G~v~~~~~~~ 133 (149)
T cd03018 79 WAEENGLTFPLLSDFWP-HGEVAKAYGVFDEDL-------G-VAERAVFVIDRDGIIRYAWVSD 133 (149)
T ss_pred HHHhcCCCceEecCCCc-hhHHHHHhCCccccC-------C-CccceEEEECCCCEEEEEEecC
Confidence 99999999998876432 266888999875431 1 1356889999999999998543
No 22
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.86 E-value=8.7e-21 Score=151.92 Aligned_cols=121 Identities=16% Similarity=0.210 Sum_probs=99.3
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL 190 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~ 190 (271)
+|+|++.|.+|+.+++++++||++||+||++||.+.|..+++.|+++++++. ++.+|+||+| +++.+++|.
T Consensus 6 aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-----~~~vi~Is~d----~~~~~~~~~ 76 (143)
T cd03014 6 APDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-----NTVVLTISAD----LPFAQKRWC 76 (143)
T ss_pred CCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-----CCEEEEEECC----CHHHHHHHH
Confidence 3999999999999999999999999999999953349999999999999863 5889999975 567889999
Q ss_pred HHcCC-ceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec
Q 042757 191 KEFNS-RIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 191 ~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~ 250 (271)
++++. .+..+.+.. ...++++||++.... + ...|++||||++|+|++.+.
T Consensus 77 ~~~~~~~~~~l~D~~--~~~~~~~~gv~~~~~---~-----~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 77 GAEGVDNVTTLSDFR--DHSFGKAYGVLIKDL---G-----LLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred HhcCCCCceEeecCc--ccHHHHHhCCeeccC---C-----ccceEEEEEcCCCeEEEEEE
Confidence 99874 677776643 256789999965321 1 12578999999999999884
No 23
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.85 E-value=1.6e-20 Score=150.63 Aligned_cols=110 Identities=15% Similarity=0.230 Sum_probs=88.6
Q ss_pred CeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhc----cCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCce
Q 042757 122 RLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSK----KNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRI 197 (271)
Q Consensus 122 ~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~----~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~ 197 (271)
..+++++++||+++|+|||||||+ |..++|.|.++++++.++ ...++.+|+|+.|. +.+.+++|+++++..|
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCpp-Cr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~---~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQ-CQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ---SEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC---CHHHHHHHHHHCCCCc
Confidence 346788999999999999999997 999999999999988765 23469999999884 5677999999998887
Q ss_pred eeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 198 VGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 198 ~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
..+....+.-..+++.|++. ..|++||||++|+|+..-
T Consensus 92 ~~~p~~~~~~~~l~~~y~v~--------------~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSVE--------------ELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred eeecccchHHHHHHHHcCCC--------------CCCEEEEECCCCcEEeeC
Confidence 65433323234677788763 478999999999999774
No 24
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.85 E-value=7.9e-21 Score=147.96 Aligned_cols=119 Identities=19% Similarity=0.318 Sum_probs=102.8
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeC-CCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYT-SSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAY 189 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at-~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~ 189 (271)
+|+|+++|.+|+.+++++++||++||+||++ |||. |..+++.|+++++++++. ++++++|+.| +++.+++|
T Consensus 5 ~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~-c~~~l~~l~~~~~~~~~~---~~~vi~is~d----~~~~~~~~ 76 (124)
T PF00578_consen 5 APDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPF-CQAELPELNELYKKYKDK---GVQVIGISTD----DPEEIKQF 76 (124)
T ss_dssp GGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TEEEEEEESS----SHHHHHHH
T ss_pred CCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccc-cccchhHHHHHhhhhccc---eEEeeecccc----cccchhhh
Confidence 3999999999999999999999999999999 9996 999999999999999854 6999999976 57799999
Q ss_pred HHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEE
Q 042757 190 LKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRC 248 (271)
Q Consensus 190 ~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~ 248 (271)
.++++..|+.+.+.. .++++.|++.... .....|.+||||++|+|+++
T Consensus 77 ~~~~~~~~~~~~D~~---~~~~~~~~~~~~~--------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 77 LEEYGLPFPVLSDPD---GELAKAFGIEDEK--------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHTCSSEEEEETT---SHHHHHTTCEETT--------TSEESEEEEEEETTSBEEEE
T ss_pred hhhhccccccccCcc---hHHHHHcCCcccc--------CCceEeEEEEECCCCEEEeC
Confidence 999999999987633 4578889886432 11247999999999999974
No 25
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.85 E-value=5.2e-21 Score=150.21 Aligned_cols=122 Identities=12% Similarity=0.086 Sum_probs=99.8
Q ss_pred CCCeEEEcCCC--CeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHH
Q 042757 111 GGPFTLIDTEN--RLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRA 188 (271)
Q Consensus 111 ~p~f~l~d~~G--~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~ 188 (271)
+|+|+++|++| +.+++++++||+++|+||++|||. |..++|.|+++.+.+ ++.+++|+.| |+.+.+++
T Consensus 3 ~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~-C~~~~~~l~~l~~~~------~~~vv~v~~~---~~~~~~~~ 72 (127)
T cd03010 3 APAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAP-CREEHPVLMALARQG------RVPIYGINYK---DNPENALA 72 (127)
T ss_pred CCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHhc------CcEEEEEECC---CCHHHHHH
Confidence 49999999999 889999999999999999999997 999999999987653 3888999876 67889999
Q ss_pred HHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHH
Q 042757 189 YLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEEL 258 (271)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l 258 (271)
|+++++..|..+..+.. ..+++.|++. ..|++|+||++|+|+.++.+..+.+.+
T Consensus 73 ~~~~~~~~~~~~~~D~~--~~~~~~~~v~--------------~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 73 WLARHGNPYAAVGFDPD--GRVGIDLGVY--------------GVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred HHHhcCCCCceEEECCc--chHHHhcCCC--------------CCCeEEEECCCceEEEEEeccCChHhc
Confidence 99999887754322222 4566777664 368889999999999999887776643
No 26
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.85 E-value=1.4e-20 Score=157.89 Aligned_cols=138 Identities=17% Similarity=0.261 Sum_probs=105.0
Q ss_pred CCCCCcCCCeEEEc-CCCC--eeecCcCCCCEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC
Q 042757 105 VTGPIIGGPFTLID-TENR--LVTENNFLGNWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR 180 (271)
Q Consensus 105 ~~~~~~~p~f~l~d-~~G~--~v~l~~~~Gk~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~ 180 (271)
+|.++ |+|++.+ .+|+ .+++++++||++||+|| ++|||. |+.|++.|+++++++++. ++++++||+|+
T Consensus 4 ~G~~a--P~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~-C~~el~~l~~~~~~~~~~---gv~vi~VS~D~-- 75 (187)
T TIGR03137 4 INTEI--KPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFV-CPTELEDLADKYAELKKL---GVEVYSVSTDT-- 75 (187)
T ss_pred cCCcC--CCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCc-CHHHHHHHHHHHHHHHhc---CCcEEEEeCCC--
Confidence 45555 9999999 6787 68888999999999999 999995 999999999999999854 68899999874
Q ss_pred CCHHHHHHHHHHc----CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC----
Q 042757 181 DTPAHLRAYLKEF----NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE---- 252 (271)
Q Consensus 181 Dt~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~---- 252 (271)
++.+++|.+.. +..|+.+.+.. ..+++.||++.... + .+.|.+||||++|+|++.+...
T Consensus 76 --~~~~~~~~~~~~~~~~l~fpllsD~~---~~~a~~~gv~~~~~---g-----~~~p~tfiID~~G~I~~~~~~~~~~~ 142 (187)
T TIGR03137 76 --HFVHKAWHDTSEAIGKITYPMLGDPT---GVLTRNFGVLIEEA---G-----LADRGTFVIDPEGVIQAVEITDNGIG 142 (187)
T ss_pred --HHHHHHHHhhhhhccCcceeEEECCc---cHHHHHhCCcccCC---C-----ceeeEEEEECCCCEEEEEEEeCCCCC
Confidence 56677776543 45677776542 67889999875321 1 1368899999999999987332
Q ss_pred CCHHHHHHHHH
Q 042757 253 YTAEELAEEIS 263 (271)
Q Consensus 253 ~~~~~l~~~i~ 263 (271)
-+.+++.+.|+
T Consensus 143 ~~~~~ll~~l~ 153 (187)
T TIGR03137 143 RDASELLRKIK 153 (187)
T ss_pred CCHHHHHHHHH
Confidence 24455555443
No 27
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.85 E-value=4.5e-20 Score=152.81 Aligned_cols=136 Identities=12% Similarity=0.188 Sum_probs=105.8
Q ss_pred CCCeEEEcCCC----CeeecCcCCCCEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHH
Q 042757 111 GGPFTLIDTEN----RLVTENNFLGNWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAH 185 (271)
Q Consensus 111 ~p~f~l~d~~G----~~v~l~~~~Gk~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~ 185 (271)
+|+|++.+.+| +.+++++++||++||+|| ++|||. |+.+++.|+++++++.+. ++++++||+|+ .+.
T Consensus 5 aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~-C~~~l~~l~~~~~~~~~~---~v~vv~Is~d~----~~~ 76 (173)
T cd03015 5 APDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFV-CPTEIIAFSDRYEEFKKL---NAEVLGVSTDS----HFS 76 (173)
T ss_pred CCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEecCC----HHH
Confidence 39999999887 789999999999999999 799996 999999999999999863 69999999875 345
Q ss_pred HHHHHHHc-------CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC----CCC
Q 042757 186 LRAYLKEF-------NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV----EYT 254 (271)
Q Consensus 186 l~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~----~~~ 254 (271)
.++|.+.+ +..|..+.+.. ..+++.||++.... .+ ..|++||||++|+|++.+.+ ..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~f~~l~D~~---~~~~~~~gv~~~~~-----~~---~~p~~~lID~~G~I~~~~~~~~~~~~~ 145 (173)
T cd03015 77 HLAWRNTPRKEGGLGKINFPLLADPK---KKISRDYGVLDEEE-----GV---ALRGTFIIDPEGIIRHITVNDLPVGRS 145 (173)
T ss_pred HHHHHHhhhhhCCccCcceeEEECCc---hhHHHHhCCccccC-----Cc---eeeEEEEECCCCeEEEEEecCCCCCCC
Confidence 55666653 45788787543 56788999875421 11 25789999999999999832 334
Q ss_pred HHHHHHHHHHH
Q 042757 255 AEELAEEISKE 265 (271)
Q Consensus 255 ~~~l~~~i~~l 265 (271)
.+++.+.|+.+
T Consensus 146 ~~~il~~l~~~ 156 (173)
T cd03015 146 VDETLRVLDAL 156 (173)
T ss_pred HHHHHHHHHHh
Confidence 56666666554
No 28
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.83 E-value=7.6e-20 Score=145.49 Aligned_cols=126 Identities=19% Similarity=0.303 Sum_probs=105.5
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAY 189 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~ 189 (271)
+|+|++.|.+|+++++++++||++||+|| ++||+. |..+++.|+++++++++. ++.+++|++| +++.+++|
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~~~~i~is~d----~~~~~~~~ 73 (140)
T cd02971 2 APDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPV-CTTELCAFRDLAEEFAKG---GAEVLGVSVD----SPFSHKAW 73 (140)
T ss_pred CCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCC----CHHHHHHH
Confidence 49999999999999999999999999999 679985 999999999999999643 6899999975 67889999
Q ss_pred HHHc-CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC
Q 042757 190 LKEF-NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE 252 (271)
Q Consensus 190 ~~~~-~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~ 252 (271)
.+++ +..|..+.+.. ..+++.||+...+.. +.. ...|++||||++|+|++.+.+.
T Consensus 74 ~~~~~~~~~~~l~D~~---~~~~~~~g~~~~~~~--~~~---~~~p~~~lid~~g~i~~~~~~~ 129 (140)
T cd02971 74 AEKEGGLNFPLLSDPD---GEFAKAYGVLIEKSA--GGG---LAARATFIIDPDGKIRYVEVEP 129 (140)
T ss_pred HhcccCCCceEEECCC---hHHHHHcCCcccccc--ccC---ceeEEEEEECCCCcEEEEEecC
Confidence 9999 88999987543 368899998875432 111 1368899999999999998553
No 29
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.83 E-value=1.4e-19 Score=153.51 Aligned_cols=145 Identities=14% Similarity=0.220 Sum_probs=107.8
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEE-EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLL-YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll-~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
+|..+ |+|++.+.+| .+++++++|||++| +||++|||. |+.|++.|+++++++++. ++++++||+|......
T Consensus 4 vG~~a--P~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~-C~~El~~l~~~~~~f~~~---~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 4 LGQKA--PDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPV-CTTEFIAFSRRYEDFKKL---GVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCC--CCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEeCCCHHHHH
Confidence 45545 9999999988 69999999998876 689999995 999999999999999864 6899999987422122
Q ss_pred HHHHHHHHHcC--CceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe----cCCCCHHH
Q 042757 184 AHLRAYLKEFN--SRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF----GVEYTAEE 257 (271)
Q Consensus 184 ~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~----~~~~~~~~ 257 (271)
+.++++.++++ ..|+.+.+.. +.+++.||+.... .+ ...|.+||||++|+|++.+ ...-+.++
T Consensus 77 ~w~~~~~~~~g~~~~fPll~D~~---~~ia~~ygv~~~~---~g-----~~~p~~fiId~~G~I~~~~~~~~~~gr~~~e 145 (202)
T PRK13190 77 AWLRDIEERFGIKIPFPVIADID---KELAREYNLIDEN---SG-----ATVRGVFIIDPNQIVRWMIYYPAETGRNIDE 145 (202)
T ss_pred HHHHhHHHhcCCCceEEEEECCC---hHHHHHcCCcccc---CC-----cEEeEEEEECCCCEEEEEEEeCCCCCCCHHH
Confidence 23344444555 4688887643 5688999985321 11 1368999999999999876 33457778
Q ss_pred HHHHHHHHhh
Q 042757 258 LAEEISKEMK 267 (271)
Q Consensus 258 l~~~i~~lL~ 267 (271)
+...|+.+..
T Consensus 146 llr~l~~l~~ 155 (202)
T PRK13190 146 IIRITKALQV 155 (202)
T ss_pred HHHHHHHhhh
Confidence 8777776654
No 30
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.83 E-value=2.2e-19 Score=149.65 Aligned_cols=152 Identities=12% Similarity=0.140 Sum_probs=113.3
Q ss_pred CCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHL 186 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l 186 (271)
.++|++.|++|+++++++++||++||+||||||+. |. +++.|++++++|+++ ++.+++|+++. +.++.+.+
T Consensus 5 ~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~-~~-q~~~L~~L~~~y~~~---gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 5 ILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGL-TP-QYEQLENIQKAWADQ---GFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred ccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCC-cH-HHHHHHHHHHHHhhC---CeEEEEeeccccccCCCCCHHHH
Confidence 38999999999999999999999999999999985 85 799999999999854 69999999863 45788999
Q ss_pred HHHHH-HcCCceeeec-----C-CHHHHHHHHHH-cCceeeeec--------cCC----CcceeecceeEEEEcCCCeEE
Q 042757 187 RAYLK-EFNSRIVGLT-----G-PVGAIRQMAQE-YRVFFKKVE--------EEG----DDYLVESSHNMYLMNPSLEVV 246 (271)
Q Consensus 187 ~~~~~-~~~~~~~~l~-----~-~~~~~~~~~~~-~gv~~~~~~--------~~~----~~y~v~~~p~~~lID~~G~iv 246 (271)
++|++ +++..|+.+. | ....+.++.+. .+....... ..+ ..-.|...=+-||||++|+++
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv 159 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVI 159 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEE
Confidence 99997 7888887762 1 22345555543 221000000 000 000133344579999999999
Q ss_pred EEecCCCCHHH--HHHHHHHHhh
Q 042757 247 RCFGVEYTAEE--LAEEISKEMK 267 (271)
Q Consensus 247 ~~~~~~~~~~~--l~~~i~~lL~ 267 (271)
.+|+....+.+ ++++|+++|.
T Consensus 160 ~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 160 QRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred EEECCCCCCCHHHHHHHHHHHhc
Confidence 99988877776 9999998884
No 31
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.82 E-value=7.1e-20 Score=143.79 Aligned_cols=110 Identities=12% Similarity=0.072 Sum_probs=92.4
Q ss_pred CCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC--CCCCHHHHHHHHHHcCCcee
Q 042757 121 NRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP--QRDTPAHLRAYLKEFNSRIV 198 (271)
Q Consensus 121 G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp--~~Dt~~~l~~~~~~~~~~~~ 198 (271)
|+++++++++||++||+||++|||+ |..++|.|++++++++++ ++.+++|+.+. ..++++.+++|+++++..|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~-C~~~~p~l~~l~~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCIN-CLHTLPYLTDLEQKYKDD---GLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHcCcC---CeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 5789999999999999999999996 999999999999999853 69999998742 23578999999999999888
Q ss_pred eecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 199 GLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 199 ~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
.+.+.. ..+++.|++ .+.|++||||++|+|++++.+
T Consensus 89 ~~~D~~---~~~~~~~~v--------------~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 89 VANDND---YATWRAYGN--------------QYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred EEECCc---hHHHHHhCC--------------CcCCeEEEECCCCcEEEEEec
Confidence 776543 345666665 357999999999999999865
No 32
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.82 E-value=3.1e-19 Score=137.20 Aligned_cols=109 Identities=14% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCeEEEcCCCCeeecCcCC-CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFL-GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL 190 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~-Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~ 190 (271)
|+|++.|.+|+.+++++++ ||++||+||++||++ |..++|.++++++++. .++.++.|+ | ++.+..++|+
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~-C~~~~p~l~~~~~~~~----~~~~vi~v~-~---~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPV-CKKLLPVIRSIARAEA----DWLDVVLAS-D---GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcc-hHhHhHHHHHHHHHhc----CCcEEEEEe-C---CCHHHHHHHH
Confidence 7899999999999999997 999999999999996 9999999999988764 257777765 3 4678899999
Q ss_pred HHcCC-ceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEE
Q 042757 191 KEFNS-RIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRC 248 (271)
Q Consensus 191 ~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~ 248 (271)
++++. .++.+.. .++++.|++ ...|++||||++|+|+++
T Consensus 72 ~~~~~~~~p~~~~-----~~~~~~~~~--------------~~~P~~~vid~~G~v~~~ 111 (114)
T cd02967 72 KKHGLEAFPYVLS-----AELGMAYQV--------------SKLPYAVLLDEAGVIAAK 111 (114)
T ss_pred HHhCCCCCcEEec-----HHHHhhcCC--------------CCcCeEEEECCCCeEEec
Confidence 99986 4666542 235566655 347999999999999865
No 33
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.81 E-value=1.9e-19 Score=142.47 Aligned_cols=112 Identities=17% Similarity=0.232 Sum_probs=90.3
Q ss_pred cCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCce
Q 042757 118 DTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRI 197 (271)
Q Consensus 118 d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~ 197 (271)
|.+ +++++++++||++||+||++||++ |..++|.|++++++++++. .++++++|++|+ +++.+++|+++++ .|
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~atwC~~-C~~~~p~l~~l~~~~~~~~-~~v~vi~Vs~d~---~~~~~~~~~~~~~-~~ 77 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKEEG-KNFEIVFVSRDR---SEESFNEYFSEMP-PW 77 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEECCCCch-HHHHHHHHHHHHHHHhhcC-CCeEEEEEecCC---CHHHHHHHHhcCC-Ce
Confidence 444 589999999999999999999997 9999999999999997652 369999999985 4678899999998 66
Q ss_pred eeecCCH-HHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec
Q 042757 198 VGLTGPV-GAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 198 ~~l~~~~-~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~ 250 (271)
..+.... .....+++.|++. +.|++||||++|+|+.+.+
T Consensus 78 ~~~~~~d~~~~~~~~~~~~v~--------------~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 78 LAVPFEDEELRELLEKQFKVE--------------GIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred EeeccCcHHHHHHHHHHcCCC--------------CCCEEEEECCCCCEEchhH
Confidence 6665433 3334566667653 4799999999999996653
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.81 E-value=8.6e-19 Score=146.76 Aligned_cols=139 Identities=16% Similarity=0.219 Sum_probs=106.5
Q ss_pred CCCCCcCCCeEEEc-CCC--CeeecCcCCCCEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC
Q 042757 105 VTGPIIGGPFTLID-TEN--RLVTENNFLGNWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR 180 (271)
Q Consensus 105 ~~~~~~~p~f~l~d-~~G--~~v~l~~~~Gk~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~ 180 (271)
+|..+ |+|+... .+| ..+++++++|||+||+|| ++|||. |+.|++.|+++++++.+. ++++++||.|
T Consensus 4 ~~~~~--p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~-C~~el~~l~~~~~~f~~~---g~~vigIS~D--- 74 (187)
T PRK10382 4 INTKI--KPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-CPTELGDVADHYEELQKL---GVDVYSVSTD--- 74 (187)
T ss_pred cCCcC--CCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHhC---CCEEEEEeCC---
Confidence 45544 9999776 334 467888999999999999 999985 999999999999999864 6899999975
Q ss_pred CCHHHHHHHHHHc----CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC----C
Q 042757 181 DTPAHLRAYLKEF----NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV----E 252 (271)
Q Consensus 181 Dt~~~l~~~~~~~----~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~----~ 252 (271)
+++.+++|.+.. +..|+.+.+. -..+++.||+..... + + ..|.+||||++|+|++.+.. .
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fpllsD~---~~~ia~~ygv~~~~~---g----~-~~r~tfIID~~G~I~~~~~~~~~~~ 142 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMIGDP---TGALTRNFDNMREDE---G----L-ADRATFVVDPQGIIQAIEVTAEGIG 142 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEEEcC---chHHHHHcCCCcccC---C----c-eeeEEEEECCCCEEEEEEEeCCCCC
Confidence 678889998763 5678888764 267899999853211 1 1 25899999999999998733 2
Q ss_pred CCHHHHHHHHHH
Q 042757 253 YTAEELAEEISK 264 (271)
Q Consensus 253 ~~~~~l~~~i~~ 264 (271)
.+.+++.+.|+.
T Consensus 143 ~~~~eil~~l~a 154 (187)
T PRK10382 143 RDASDLLRKIKA 154 (187)
T ss_pred CCHHHHHHHHHh
Confidence 455666655544
No 35
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.80 E-value=7.7e-19 Score=149.19 Aligned_cols=137 Identities=12% Similarity=0.220 Sum_probs=102.1
Q ss_pred CCCeEEEcCCCCeeecCcCCC-CEE-EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFLG-NWV-LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRA 188 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~G-k~v-ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~ 188 (271)
+|+|++.+.+| .+++++++| ||+ |++||++|||. |..|++.|+++++++++. ++++++||+|+ ++..++
T Consensus 5 aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~-C~~el~~l~~~~~~f~~~---gv~vigvS~D~----~~~~~~ 75 (203)
T cd03016 5 APNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPV-CTTELGAFAKLAPEFKKR---NVKLIGLSVDS----VESHIK 75 (203)
T ss_pred CCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCc-CHHHHHHHHHHHHHHHHc---CCEEEEEECCC----HHHHHH
Confidence 39999999998 489999988 776 55899999995 999999999999999864 68999999874 455555
Q ss_pred HHHH------cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC----CCHHHH
Q 042757 189 YLKE------FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE----YTAEEL 258 (271)
Q Consensus 189 ~~~~------~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~----~~~~~l 258 (271)
|.+. .+..|+.+.+.. ..+++.||+..... +... ..+.+||||++|+|++.+.++ -+.+++
T Consensus 76 ~~~~i~~~~~~~~~fpil~D~~---~~ia~~yg~~~~~~---~~~~---~~r~~fiID~~G~I~~~~~~~~~~gr~~~el 146 (203)
T cd03016 76 WIEDIEEYTGVEIPFPIIADPD---REVAKLLGMIDPDA---GSTL---TVRAVFIIDPDKKIRLILYYPATTGRNFDEI 146 (203)
T ss_pred HHhhHHHhcCCCCceeEEECch---HHHHHHcCCccccC---CCCc---eeeEEEEECCCCeEEEEEecCCCCCCCHHHH
Confidence 5544 567788787643 57889999864211 1111 257899999999999887443 344556
Q ss_pred HHHHHHH
Q 042757 259 AEEISKE 265 (271)
Q Consensus 259 ~~~i~~l 265 (271)
.+.|+.+
T Consensus 147 l~~l~~l 153 (203)
T cd03016 147 LRVVDAL 153 (203)
T ss_pred HHHHHHH
Confidence 5555543
No 36
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.80 E-value=9.7e-19 Score=149.62 Aligned_cols=141 Identities=11% Similarity=0.187 Sum_probs=103.8
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEEEE-EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWVLL-YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll-~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
+|..+ |+|++.+.+|+....++++|||++| +||++|||. |+.|++.|+++++++++. ++++++||+| +.
T Consensus 9 iG~~a--PdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpv-C~tEl~~l~~~~~ef~~~---g~~VigvS~D----s~ 78 (215)
T PRK13191 9 IGEKF--PEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPV-CTTEFYSFAKKYEEFKKL---NTELIGLSVD----SN 78 (215)
T ss_pred CCCcC--CCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEECC----CH
Confidence 55555 9999999999744445589998776 889999995 999999999999999865 5899999987 44
Q ss_pred HHHHHHH---HH---cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC----CC
Q 042757 184 AHLRAYL---KE---FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV----EY 253 (271)
Q Consensus 184 ~~l~~~~---~~---~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~----~~ 253 (271)
...++|. ++ .+..|+.+.+.. ..++++||+..... .. ...+.+||||++|+|++.+.+ .-
T Consensus 79 ~~h~aw~~~~~~~~~~~i~fPllsD~~---~~ia~~ygv~~~~~----~~---~~~r~tfIID~~G~Ir~~~~~~~~~gr 148 (215)
T PRK13191 79 ISHIEWVMWIEKNLKVEVPFPIIADPM---GNVAKRLGMIHAES----ST---ATVRAVFIVDDKGTVRLILYYPMEIGR 148 (215)
T ss_pred HHHHHHHhhHHHhcCCCCceEEEECCc---hHHHHHcCCccccc----CC---ceeEEEEEECCCCEEEEEEecCCCCCC
Confidence 5555544 32 356788887753 67889999864211 01 136899999999999998633 23
Q ss_pred CHHHHHHHHHHH
Q 042757 254 TAEELAEEISKE 265 (271)
Q Consensus 254 ~~~~l~~~i~~l 265 (271)
+.+++...|+.+
T Consensus 149 ~~~eilr~l~al 160 (215)
T PRK13191 149 NIDEILRAIRAL 160 (215)
T ss_pred CHHHHHHHHHHh
Confidence 556666666543
No 37
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.80 E-value=8e-19 Score=150.11 Aligned_cols=141 Identities=7% Similarity=0.125 Sum_probs=106.3
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCCEE-EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGNWV-LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~v-ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
+|.++ |+|++.+.+|+.+.+++++|||+ |++||++|||. |..|++.|+++++++++. ++.+++||+| +.
T Consensus 4 ~Gd~a--PdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpv-Ct~El~~l~~~~~~f~~~---gv~vigIS~D----~~ 73 (215)
T PRK13599 4 LGEKF--PSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPV-CTTEFVEFARKANDFKEL---NTELIGLSVD----QV 73 (215)
T ss_pred CCCCC--CCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCC----CH
Confidence 56555 99999999999888899999986 67999999995 999999999999999864 5899999987 44
Q ss_pred HHHHHH---HHH---cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC----CC
Q 042757 184 AHLRAY---LKE---FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV----EY 253 (271)
Q Consensus 184 ~~l~~~---~~~---~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~----~~ 253 (271)
+..++| +++ .+..|+.+.+.. ..+++.||+..... +....+++||||++|+|++.+.. .-
T Consensus 74 ~~~~~w~~~i~~~~~~~i~fPil~D~~---~~va~~yg~~~~~~-------~~~~~R~tfIID~dG~Ir~~~~~p~~~gr 143 (215)
T PRK13599 74 FSHIKWVEWIKDNTNIAIPFPVIADDL---GKVSNQLGMIHPGK-------GTNTVRAVFIVDDKGTIRLIMYYPQEVGR 143 (215)
T ss_pred HHHHHHHHhHHHhcCCCCceeEEECCC---chHHHHcCCCccCC-------CCceeeEEEEECCCCEEEEEEEcCCCCCC
Confidence 555444 443 346788887643 46789999864211 11246999999999999988632 23
Q ss_pred CHHHHHHHHHHH
Q 042757 254 TAEELAEEISKE 265 (271)
Q Consensus 254 ~~~~l~~~i~~l 265 (271)
+.+++.+.|+.+
T Consensus 144 ~~~eilr~l~~l 155 (215)
T PRK13599 144 NVDEILRALKAL 155 (215)
T ss_pred CHHHHHHHHHHh
Confidence 566666666554
No 38
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.80 E-value=2.4e-18 Score=163.08 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=105.7
Q ss_pred cCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCC--CCCHHHHH
Q 042757 110 IGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ--RDTPAHLR 187 (271)
Q Consensus 110 ~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~--~Dt~~~l~ 187 (271)
.+|+|++.|.+|+.++++ +||++||+|||+||++ |..++|.|++++++++. .++.+|.|+++.. .++.+.++
T Consensus 37 ~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCpp-Ck~emP~L~eL~~e~k~---~~v~VI~Vs~~~~~~e~~~~~~~ 110 (521)
T PRK14018 37 TLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPL-CLSELGETEKWAQDAKF---SSANLITVASPGFLHEKKDGDFQ 110 (521)
T ss_pred CCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHH-HHHHHHHHHHHHHHhcc---CCeEEEEEecccccccccHHHHH
Confidence 349999999999999987 8999999999999997 99999999999998863 3688999987532 23567778
Q ss_pred HHHHHcCC-ceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 188 AYLKEFNS-RIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 188 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
+|++..+. .++.+.+. ...+++.|++. ..|++||||++|+|+..+.+..+.+++.+.|+
T Consensus 111 ~~~~~~~y~~~pV~~D~---~~~lak~fgV~--------------giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 111 KWYAGLDYPKLPVLTDN---GGTLAQSLNIS--------------VYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHhCCCcccceeccc---cHHHHHHcCCC--------------CcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 88876653 45555443 24566777654 47899999999999999988899988888777
No 39
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.80 E-value=8.1e-19 Score=133.10 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=100.3
Q ss_pred CeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 113 ~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
+|++.+.+|+.+++++++||++||+||++||+. |+..++.|.++.+++++ .++.++.|++|+. +++.+++|+++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~---~~~~~~~v~~d~~--~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPP-CRAEMPELEALAKEYKD---DGVEVVGVNVDDD--DPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChh-HHHHhHHHHHHHHHhCC---CCeEEEEEECCCC--CHHHHHHHHHH
Confidence 578999999999999999999999999999997 99999999999999873 3699999999975 79999999999
Q ss_pred cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 193 FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
++..|..+.+.. .++.+.|++. +.|.+||+|++|++++.+.+
T Consensus 75 ~~~~~~~~~~~~---~~~~~~~~~~--------------~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 YGITFPVLLDPD---GELAKAYGVR--------------GLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cCCCcceEEcCc---chHHHhcCcC--------------ccceEEEECCCCcEEEEecC
Confidence 998888887652 3456667653 57889999999999988753
No 40
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.80 E-value=7.9e-19 Score=136.73 Aligned_cols=121 Identities=12% Similarity=0.100 Sum_probs=103.0
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLK 191 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~ 191 (271)
|+|+++|.+|+.+++++++||+++|+||++||+. |..+++.|++++++ +.+++|++|+ ++++.+++|++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~-C~~~~~~l~~~~~~--------~~~i~i~~~~--~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPV-CRFTSPTVNQLAAD--------YPVVSVALRS--GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChh-hhhhChHHHHHHhh--------CCEEEEEccC--CCHHHHHHHHH
Confidence 7899999999999999999999999999999996 99999999999874 5578888884 57899999999
Q ss_pred HcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHH
Q 042757 192 EFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEE 261 (271)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~ 261 (271)
+++..|..+.+.. .++++.|++ .+.|++||||++| |+..+.+..+.+++.+.
T Consensus 70 ~~~~~~~~~~d~~---~~~~~~~~i--------------~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 KKGYGFPVINDPD---GVISARWGV--------------SVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HcCCCccEEECCC---cHHHHhCCC--------------CcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 9998888776543 346666654 4579999999999 99999888888888654
No 41
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.80 E-value=5.3e-19 Score=139.55 Aligned_cols=113 Identities=13% Similarity=0.210 Sum_probs=90.5
Q ss_pred EEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 116 LIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 116 l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
|.|.+|+.+++++++||++||+||++||++ |..++|.|+++++++.+++ .++++++|++|. +.+.+++|+++++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~~~~~~~~~~-~~~~vv~is~d~---~~~~~~~~~~~~~- 76 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKESG-KNFEIVFISWDR---DEESFNDYFSKMP- 76 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChH-HHHHhHHHHHHHHHHHhcC-CCEEEEEEECCC---CHHHHHHHHHcCC-
Confidence 568999999999999999999999999997 9999999999999998653 379999999985 3467788887754
Q ss_pred ceeeecCC-HHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 196 RIVGLTGP-VGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 196 ~~~~l~~~-~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
|..+... .+....+++.|++. ..|++||||++|+|+...
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~v~--------------~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 77 -WLAVPFSDRERRSRLNRTFKIE--------------GIPTLIILDADGEVVTTD 116 (131)
T ss_pred -eeEcccCCHHHHHHHHHHcCCC--------------CCCEEEEECCCCCEEccc
Confidence 3333222 24445677778763 478999999999998664
No 42
>PRK15000 peroxidase; Provisional
Probab=99.79 E-value=2.4e-18 Score=145.75 Aligned_cols=139 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred CCCCCcCCCeEEEcCC--CCe---eecCcC-CCCEEEEEEeeC-CCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 105 VTGPIIGGPFTLIDTE--NRL---VTENNF-LGNWVLLYFGYT-SSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~--G~~---v~l~~~-~Gk~vll~F~at-~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+|.++ |+|++.+.. |+. ++++++ +|||+||+||++ ||| +|+.|++.|++++++++++ ++++++||+|
T Consensus 4 vg~~a--PdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~-vC~~El~~l~~~~~~f~~~---g~~vigvS~D 77 (200)
T PRK15000 4 VTRQA--PDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTF-VCPSELIAFDKRYEEFQKR---GVEVVGVSFD 77 (200)
T ss_pred CCCcC--CCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCC-CCHHHHHHHHHHHHHHHHC---CCEEEEEECC
Confidence 55555 999999864 453 455555 899999999996 777 5999999999999999864 6899999987
Q ss_pred CCCCCHHHHHHHHHH----cC---CceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec
Q 042757 178 PQRDTPAHLRAYLKE----FN---SRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 178 p~~Dt~~~l~~~~~~----~~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~ 250 (271)
+++..++|.+. .+ ..|+.+.+.. ..+++.||+.... .+ . ..|.+||||++|+|+..+.
T Consensus 78 ----~~~~~~~w~~~~~~~~g~~~i~fpllsD~~---~~ia~~ygv~~~~---~g--~---~~r~tfiID~~G~I~~~~~ 142 (200)
T PRK15000 78 ----SEFVHNAWRNTPVDKGGIGPVKYAMVADVK---REIQKAYGIEHPD---EG--V---ALRGSFLIDANGIVRHQVV 142 (200)
T ss_pred ----CHHHHHHHHhhHHHhCCccccCceEEECCC---cHHHHHcCCccCC---CC--c---EEeEEEEECCCCEEEEEEe
Confidence 45566666543 33 3688887653 5688999986421 11 1 3689999999999999874
Q ss_pred CC----CCHHHHHHHHHH
Q 042757 251 VE----YTAEELAEEISK 264 (271)
Q Consensus 251 ~~----~~~~~l~~~i~~ 264 (271)
++ -+.+++...|+.
T Consensus 143 ~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 143 NDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 43 344555555544
No 43
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.79 E-value=1.7e-18 Score=143.73 Aligned_cols=123 Identities=7% Similarity=0.026 Sum_probs=88.7
Q ss_pred CCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeE------EEEEeCCCC-CCHHHHHHHHHH
Q 042757 120 ENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILP------IFVTIDPQR-DTPAHLRAYLKE 192 (271)
Q Consensus 120 ~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~------v~IsvDp~~-Dt~~~l~~~~~~ 192 (271)
+.+.++.++++||+.||+|||+||++ |..|.|.|.++.+ .++.+ ++|+.|... ++...+++|+++
T Consensus 48 ~y~~~~~~~l~GKV~lvn~~Aswc~~-c~~e~P~l~~l~~-------~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~ 119 (184)
T TIGR01626 48 VYQPWGSAELAGKVRVVHHIAGRTSA-KEXNASLIDAIKA-------AKFPPVKYQTTTIINADDAIVGTGMFVKSSAKK 119 (184)
T ss_pred cceeccHHHcCCCEEEEEEEecCCCh-hhccchHHHHHHH-------cCCCcccccceEEEECccchhhHHHHHHHHHHH
Confidence 44567788899999999999999997 9999999999943 24666 888887321 233445666666
Q ss_pred cCCcee---eecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeE-EEEcCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 193 FNSRIV---GLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNM-YLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 193 ~~~~~~---~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~-~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
....++ .+.++. ..++.+||+. ..|.+ ||||++|+|++.+.|..+.+++.+ +..+|++
T Consensus 120 ~~~~~P~~~vllD~~---g~v~~~~gv~--------------~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~-~~~li~~ 181 (184)
T TIGR01626 120 GKKENPWSQVVLDDK---GAVKNAWQLN--------------SEDSAIIVLDKTGKVKFVKEGALSDSDIQT-VISLVNG 181 (184)
T ss_pred hcccCCcceEEECCc---chHHHhcCCC--------------CCCceEEEECCCCcEEEEEeCCCCHHHHHH-HHHHHHH
Confidence 665554 444432 2345566653 35555 999999999999999988888866 6555554
No 44
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.79 E-value=3.4e-18 Score=149.48 Aligned_cols=140 Identities=12% Similarity=0.156 Sum_probs=106.3
Q ss_pred CCCCCCcCCCeEEEc-CCCC--eeecCcC-CCCEEEEEEe-eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 104 RVTGPIIGGPFTLID-TENR--LVTENNF-LGNWVLLYFG-YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 104 ~~~~~~~~p~f~l~d-~~G~--~v~l~~~-~Gk~vll~F~-at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
.+|..+ |+|++.+ .+|+ .++++++ +|||+||+|| ++|||. |+.|++.|++.++++++. ++++++||+|
T Consensus 69 ~vGd~a--PdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpv-Ct~El~~l~~~~~ef~~~---gv~VigIS~D- 141 (261)
T PTZ00137 69 LVGKLM--PSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFV-CPSELLGFSERLKEFEER---GVKVLGVSVD- 141 (261)
T ss_pred cCCCCC--CCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEECC-
Confidence 466655 9999987 5664 6899997 8999888887 799995 999999999999999865 5899999987
Q ss_pred CCCCHHHHHHHHHH-------cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 179 QRDTPAHLRAYLKE-------FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 179 ~~Dt~~~l~~~~~~-------~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
+++..++|.+. .+..|+.+.+.. .+++++||+... .+ + ..|.+||||++|+|++.+..
T Consensus 142 ---s~~~h~aw~~~~~~~~g~~~l~fPlLsD~~---~~iakayGv~~~----~g--~---a~R~tFIID~dG~I~~~~~~ 206 (261)
T PTZ00137 142 ---SPFSHKAWKELDVRQGGVSPLKFPLFSDIS---REVSKSFGLLRD----EG--F---SHRASVLVDKAGVVKHVAVY 206 (261)
T ss_pred ---CHHHHHHHHhhhhhhccccCcceEEEEcCC---hHHHHHcCCCCc----CC--c---eecEEEEECCCCEEEEEEEe
Confidence 45667777653 356788888653 678999998631 11 1 36889999999999998732
Q ss_pred ----CCCHHHHHHHHHHH
Q 042757 252 ----EYTAEELAEEISKE 265 (271)
Q Consensus 252 ----~~~~~~l~~~i~~l 265 (271)
.-+.+++...|+.+
T Consensus 207 ~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 207 DLGLGRSVDETLRLFDAV 224 (261)
T ss_pred CCCCCCCHHHHHHHHHHh
Confidence 34556666555543
No 45
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.78 E-value=1.2e-17 Score=138.06 Aligned_cols=117 Identities=12% Similarity=0.064 Sum_probs=91.1
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLK 191 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~ 191 (271)
|+|++. +|+.+++++++ ||+||++|||+ |..|+|.|+++++++ ++.+++|++|...+
T Consensus 56 ~~f~l~--dG~~v~lsd~~----lV~FwaswCp~-C~~e~P~L~~l~~~~------g~~Vi~Vs~D~~~~---------- 112 (181)
T PRK13728 56 RWFRLS--NGRQVNLADWK----VVLFMQGHCPY-CHQFDPVLKQLAQQY------GFSVFPYTLDGQGD---------- 112 (181)
T ss_pred CccCCC--CCCEeehhHce----EEEEECCCCHh-HHHHHHHHHHHHHHc------CCEEEEEEeCCCCC----------
Confidence 678874 99999999997 88899999997 999999999999986 38899999984321
Q ss_pred HcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEE-EecCCCCHHHHHHHHHHHhhh
Q 042757 192 EFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVR-CFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 192 ~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~-~~~~~~~~~~l~~~i~~lL~~ 268 (271)
..|+.+.++.+ ..+.+.||+. +.+.|++||||++|++++ .+.|..+.+++.+.|..+++.
T Consensus 113 ---~~fPv~~dd~~--~~~~~~~g~~------------~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 113 ---TAFPEALPAPP--DVMQTFFPNI------------PVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred ---CCCceEecCch--hHHHHHhCCC------------CCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 45666654222 2344566531 124799999999999975 677889999999999998864
No 46
>PRK13189 peroxiredoxin; Provisional
Probab=99.78 E-value=6.6e-18 Score=145.24 Aligned_cols=140 Identities=9% Similarity=0.131 Sum_probs=102.2
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCc-CCCCEEE-EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCC
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENN-FLGNWVL-LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDT 182 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~-~~Gk~vl-l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt 182 (271)
+|.++ |+|++.+.+|+ +++++ ++|||++ ++||++|||. |+.|++.|+++++++.+. ++++++||+| +
T Consensus 11 vG~~a--PdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpv-C~tEl~~l~~~~~ef~~~---~v~VigvS~D----~ 79 (222)
T PRK13189 11 IGDKF--PEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPV-CTTEFVAFQKRYDEFREL---NTELIGLSID----Q 79 (222)
T ss_pred CCCcC--CCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHHc---CCEEEEEECC----C
Confidence 55555 99999999986 67766 5999765 4789999995 999999999999999864 6899999987 4
Q ss_pred HHHHHHHHHH----c--CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC----
Q 042757 183 PAHLRAYLKE----F--NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE---- 252 (271)
Q Consensus 183 ~~~l~~~~~~----~--~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~---- 252 (271)
+...++|.+. . +..|+.+.+.. ..++++||+...... + ...|.+||||++|+|++.+.++
T Consensus 80 ~~~h~aw~~~~~~~~g~~i~fPllsD~~---~~ia~~ygv~~~~~~--~-----~~~r~tfIID~~G~Ir~~~~~~~~~g 149 (222)
T PRK13189 80 VFSHIKWVEWIKEKLGVEIEFPIIADDR---GEIAKKLGMISPGKG--T-----NTVRAVFIIDPKGIIRAILYYPQEVG 149 (222)
T ss_pred HHHHHHHHHhHHHhcCcCcceeEEEcCc---cHHHHHhCCCccccC--C-----CceeEEEEECCCCeEEEEEecCCCCC
Confidence 4555566554 2 35677776543 568899998642110 1 1368899999999999876432
Q ss_pred CCHHHHHHHHHHH
Q 042757 253 YTAEELAEEISKE 265 (271)
Q Consensus 253 ~~~~~l~~~i~~l 265 (271)
-+.+++...|+.+
T Consensus 150 r~~~eilr~l~al 162 (222)
T PRK13189 150 RNMDEILRLVKAL 162 (222)
T ss_pred CCHHHHHHHHHHh
Confidence 3455666666544
No 47
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.77 E-value=5.5e-18 Score=135.93 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=99.7
Q ss_pred CCCeEEEcCCCCeeecCcCC-CCEE-EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHH
Q 042757 111 GGPFTLIDTENRLVTENNFL-GNWV-LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRA 188 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~-Gk~v-ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~ 188 (271)
+|+|+++|.+|+.++++++. +|++ |++||++|||. |..+++.|+++++++.+. ++.+|+|+.| +.+.+.+
T Consensus 2 ~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~---~v~vv~V~~~----~~~~~~~ 73 (149)
T cd02970 2 APDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDAL---GVELVAVGPE----SPEKLEA 73 (149)
T ss_pred CCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhc---CeEEEEEeCC----CHHHHHH
Confidence 49999999999999999875 4655 55557999996 999999999999999853 6999999976 4566778
Q ss_pred HHHHcCCceeeecCCHHHHHHHHHHcCceeeeecc---------------CCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 189 YLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEE---------------EGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 189 ~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~---------------~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
|.++++..|+.+.+.. ..+.+.||+....... .+..-.....|.+||||++|+|++.+.+
T Consensus 74 ~~~~~~~~~p~~~D~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 74 FDKGKFLPFPVYADPD---RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHHhcCCCCeEEECCc---hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 9999999999888743 5678899986432110 0001112247899999999999998743
No 48
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.76 E-value=8.3e-18 Score=142.41 Aligned_cols=126 Identities=13% Similarity=0.275 Sum_probs=94.9
Q ss_pred CCCCCcCCCeEEEc----CCCCeeecCcCCCCEEEEEEee-CCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCC
Q 042757 105 VTGPIIGGPFTLID----TENRLVTENNFLGNWVLLYFGY-TSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ 179 (271)
Q Consensus 105 ~~~~~~~p~f~l~d----~~G~~v~l~~~~Gk~vll~F~a-t~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~ 179 (271)
+|.++ |+|++.+ .+|+++++++++|||+||+||+ +||+ +|+.|++.|+++++++.+. ++++|+||+|+.
T Consensus 8 ~G~~a--PdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~-~C~~e~~~l~~~~~~f~~~---g~~vv~IS~d~~ 81 (199)
T PTZ00253 8 INHPA--PSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTF-VCPTEIIQFSDSVKRFNEL---NCEVLACSMDSE 81 (199)
T ss_pred cCCcC--CCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCC-cCHHHHHHHHHHHHHHHHc---CCEEEEEeCCCH
Confidence 56655 9999665 4668999999999999999997 6687 5999999999999999864 699999998753
Q ss_pred CCCHHHHHHHHHH------c-CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 180 RDTPAHLRAYLKE------F-NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 180 ~Dt~~~l~~~~~~------~-~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
....+|... . +..|+.+.+. .+++++.||++.... +. ..+.+||||++|+|+..+.+
T Consensus 82 ----~~~~~~~~~~~~~~~~~~~~fpll~D~---~~~ia~~ygv~~~~~---g~-----~~r~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 82 ----YAHLQWTLQERKKGGLGTMAIPMLADK---TKSIARSYGVLEEEQ---GV-----AYRGLFIIDPKGMLRQITVN 145 (199)
T ss_pred ----HHHHHHHhChHhhCCccccccceEECc---HhHHHHHcCCcccCC---Cc-----eEEEEEEECCCCEEEEEEec
Confidence 333444221 1 2567777764 367889999864321 11 14789999999999988744
No 49
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.75 E-value=1.4e-17 Score=170.92 Aligned_cols=140 Identities=11% Similarity=0.055 Sum_probs=114.7
Q ss_pred CCCCCcCCCeEEEc--CCCCeeec-CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe---CC
Q 042757 105 VTGPIIGGPFTLID--TENRLVTE-NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI---DP 178 (271)
Q Consensus 105 ~~~~~~~p~f~l~d--~~G~~v~l-~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv---Dp 178 (271)
.+.++ |+|...+ .+|+++++ ++++||++||+|||+||++ |..++|.|++++++++++ ++.+|+|+. |.
T Consensus 393 ~g~~~--p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~p-C~~e~P~L~~l~~~y~~~---~~~vvgV~~~~~D~ 466 (1057)
T PLN02919 393 TATKV--PEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCIN-CMHVLPDLEFLEKKYKDQ---PFTVVGVHSAKFDN 466 (1057)
T ss_pred cCCcC--CCCcccccccCCccccchhhcCCCEEEEEEECCcChh-HHhHhHHHHHHHHHcCCC---CeEEEEEecccccc
Confidence 34444 9999876 68999998 5899999999999999997 999999999999998743 589999974 43
Q ss_pred CCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHH
Q 042757 179 QRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEEL 258 (271)
Q Consensus 179 ~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l 258 (271)
+ ++.+.+++|+++++..|+.+.+.. ..++++|++ ...|++||||++|+|+.++.++...+++
T Consensus 467 ~-~~~~~~~~~~~~~~i~~pvv~D~~---~~~~~~~~V--------------~~iPt~ilid~~G~iv~~~~G~~~~~~l 528 (1057)
T PLN02919 467 E-KDLEAIRNAVLRYNISHPVVNDGD---MYLWRELGV--------------SSWPTFAVVSPNGKLIAQLSGEGHRKDL 528 (1057)
T ss_pred c-ccHHHHHHHHHHhCCCccEEECCc---hHHHHhcCC--------------CccceEEEECCCCeEEEEEecccCHHHH
Confidence 3 347889999999998888776533 345666665 3478999999999999999888889999
Q ss_pred HHHHHHHhhh
Q 042757 259 AEEISKEMKK 268 (271)
Q Consensus 259 ~~~i~~lL~~ 268 (271)
.+.|+.++.-
T Consensus 529 ~~~l~~~l~~ 538 (1057)
T PLN02919 529 DDLVEAALQY 538 (1057)
T ss_pred HHHHHHHHHh
Confidence 9999888763
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.74 E-value=2.6e-17 Score=122.47 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=80.5
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
||+++|+||++||++ |..+++.|.++++++++ +.++++|+|+.| ++.+..++++++++..|..+..+.+....+
T Consensus 1 gK~~ll~fwa~~c~~-c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 1 GKPVLLYFWASWCPP-CKKELPKLKELYKKYKK--KDDVEFVFVSLD---EDEEEWKKFLKKNNFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp TSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTT--TTTEEEEEEE-S---SSHHHHHHHHHTCTTSSEEEETTTHHHHHH
T ss_pred CCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC--CCCEEEEEEEeC---CCHHHHHHHHHhcCCCceEEeeCcchHHHH
Confidence 899999999999998 99999999999999996 258999999998 467889999999988888877766666788
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeE
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEV 245 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~i 245 (271)
.+.|++. ..|+++|||++|+|
T Consensus 75 ~~~~~i~--------------~iP~~~lld~~G~I 95 (95)
T PF13905_consen 75 LKKYGIN--------------GIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHTT-T--------------SSSEEEEEETTSBE
T ss_pred HHHCCCC--------------cCCEEEEECCCCCC
Confidence 8888764 47999999999987
No 51
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.1e-15 Score=125.91 Aligned_cols=140 Identities=18% Similarity=0.276 Sum_probs=108.6
Q ss_pred CCCCCcCCCeEEEcC-CCC---eeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC
Q 042757 105 VTGPIIGGPFTLIDT-ENR---LVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR 180 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~-~G~---~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~ 180 (271)
+|..+ |+|+.+.. .|. +++++++.|||++|+||...-.++||.|+..+++.++++++. ++++++||+|
T Consensus 5 Ig~~a--P~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---g~eVigvS~D--- 76 (194)
T COG0450 5 IGKKA--PDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---GVEVIGVSTD--- 76 (194)
T ss_pred cCCcC--CCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---CCEEEEEecC---
Confidence 56656 99999987 775 899999989999999999999999999999999999999975 6999999987
Q ss_pred CCHHHHHHHHHH----cC---CceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCC
Q 042757 181 DTPAHLRAYLKE----FN---SRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEY 253 (271)
Q Consensus 181 Dt~~~l~~~~~~----~~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~ 253 (271)
+.....+|.+. .+ ..|+.+.+.. .+++++||+..... |. ....+|||||+|.|+.....+.
T Consensus 77 -s~fsH~aW~~~~~~~~gi~~i~~PmiaD~~---~~vs~~ygvl~~~~---g~-----a~R~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 -SVFSHKAWKATIREAGGIGKIKFPMIADPK---GEIARAYGVLHPEE---GL-----ALRGTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred -cHHHHHHHHhcHHhcCCccceecceEEcCc---hhHHHHcCCcccCC---Cc-----ceeEEEEECCCCeEEEEEEecC
Confidence 56777777665 33 4566665533 67899999975322 11 3578899999999998865444
Q ss_pred C----HHHHHHHHHH
Q 042757 254 T----AEELAEEISK 264 (271)
Q Consensus 254 ~----~~~l~~~i~~ 264 (271)
+ .+++...|+.
T Consensus 145 ~iGRn~dEilR~idA 159 (194)
T COG0450 145 TIGRNVDEILRVIDA 159 (194)
T ss_pred CCCcCHHHHHHHHHH
Confidence 3 4455444443
No 52
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.67 E-value=3e-16 Score=127.23 Aligned_cols=109 Identities=12% Similarity=0.141 Sum_probs=73.5
Q ss_pred CCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeee
Q 042757 121 NRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 121 G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l 200 (271)
|+++++++ +.||+||++|||+ |..|+|.|+++++++ ++.+++|++|.... +.|. ..
T Consensus 44 G~~~~l~~----~~lvnFWAsWCpp-Cr~e~P~L~~l~~~~------~~~Vi~Vs~d~~~~---------~~fp----~~ 99 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPY-CHQFAPVLKRFSQQF------GLPVYAFSLDGQGL---------TGFP----DP 99 (153)
T ss_pred chhhhcCC----CEEEEEECCCChh-HHHHHHHHHHHHHHc------CCcEEEEEeCCCcc---------cccc----cc
Confidence 66666654 4599999999997 999999999999876 36788999885321 1121 11
Q ss_pred cCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEE-EEecCCCCHHHHHHHHHHHh
Q 042757 201 TGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVV-RCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 201 ~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv-~~~~~~~~~~~l~~~i~~lL 266 (271)
.+... ..+.+.|+. |++...|++||||++|+++ ..+.+..+.+++.+.|+++|
T Consensus 100 ~~~~~--~~~~~~~~~-----------~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 100 LPATP--EVMQTFFPN-----------PRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred cCCch--HHHHHHhcc-----------CCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 11111 111122311 1345689999999998864 46777888998888888765
No 53
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=121.27 Aligned_cols=117 Identities=18% Similarity=0.234 Sum_probs=102.5
Q ss_pred eEEEcCCCCeeecC-cCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 114 FTLIDTENRLVTEN-NFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 114 f~l~d~~G~~v~l~-~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
..|..++|..+..+ .++||++.+||.|.|||+ |+...|.|.++++++.+++ ..+++|+||-|. +.+.+.+|..+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~p-CR~FTP~Lk~fYe~l~~~~-~~fEVvfVS~D~---~~~~~~~y~~~ 89 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPP-CRDFTPILKDFYEELKDNA-APFEVVFVSSDR---DEESLDEYMLE 89 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCc-hhhCCchHHHHHHHHHhcC-CceEEEEEecCC---CHHHHHHHHHh
Confidence 55888899888777 589999999999999998 9999999999999999876 489999999984 67889999999
Q ss_pred cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 193 FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
++.+|..+.-..+.++++.+.|+|. +.|.+.+++|+|+++-..
T Consensus 90 ~~~~W~~iPf~d~~~~~l~~ky~v~--------------~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 90 HHGDWLAIPFGDDLIQKLSEKYEVK--------------GIPALVILKPDGTVVTED 132 (157)
T ss_pred cCCCeEEecCCCHHHHHHHHhcccC--------------cCceeEEecCCCCEehHh
Confidence 9999999988888888888887653 578889999999888554
No 54
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.62 E-value=8.4e-15 Score=119.23 Aligned_cols=125 Identities=18% Similarity=0.182 Sum_probs=98.5
Q ss_pred CCCeEEEcCC---CCeeecCc-CCCCEEEE-EEeeCCCCCChHHH-HHHHHHHHHHHhhccCCCe-eEEEEEeCCCCCCH
Q 042757 111 GGPFTLIDTE---NRLVTENN-FLGNWVLL-YFGYTSSPDVGPEQ-VQMMAKAIDILDSKKNLKI-LPIFVTIDPQRDTP 183 (271)
Q Consensus 111 ~p~f~l~d~~---G~~v~l~~-~~Gk~vll-~F~at~Cp~~C~~e-l~~l~~l~~~l~~~~~~~v-~~v~IsvDp~~Dt~ 183 (271)
+|+|++.+.+ |+.+++++ ++|||++| +|+..||| +|..| ++.+++.++++.+. ++ .+++||.| ++
T Consensus 5 aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp-~Ct~e~~~~~~~~~~~f~~~---g~~~V~~iS~D----~~ 76 (155)
T cd03013 5 LPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTP-TCSAQHLPGYVENADELKAK---GVDEVICVSVN----DP 76 (155)
T ss_pred CCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCC-CCchhHHHHHHHhHHHHHHC---CCCEEEEEECC----CH
Confidence 4999999986 99999999 58876555 55778888 59999 99999999999865 46 58999975 78
Q ss_pred HHHHHHHHHcCC--ceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec
Q 042757 184 AHLRAYLKEFNS--RIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 184 ~~l~~~~~~~~~--~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~ 250 (271)
+.+++|.++++. +++.|++.. .+++++||+...... .+. .....+.+|||| +|+|++.+.
T Consensus 77 ~~~~~~~~~~~~~~~f~lLsD~~---~~~~~~ygv~~~~~~-~~~--~~~~~R~~fiId-~g~I~~~~~ 138 (155)
T cd03013 77 FVMKAWGKALGAKDKIRFLADGN---GEFTKALGLTLDLSA-AGG--GIRSKRYALIVD-DGKVKYLFV 138 (155)
T ss_pred HHHHHHHHhhCCCCcEEEEECCC---HHHHHHcCCCccccc-cCC--cceeeeEEEEEC-CCEEEEEEE
Confidence 899999999986 799998753 678999999864321 110 111357889999 799998873
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.58 E-value=7.8e-15 Score=117.69 Aligned_cols=109 Identities=12% Similarity=0.015 Sum_probs=84.9
Q ss_pred EEEcCCCCeeecCc--CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 115 TLIDTENRLVTENN--FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 115 ~l~d~~G~~v~l~~--~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
++++++++...+++ ..||++||+||++||++ |...+|.+.++.+.++ .++.++.|.+|...
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~-C~~~~p~l~~l~~~~~----~~~~~v~v~vd~~~------------ 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTV-CQEMAPDVAKLKQKYG----DQVNFVMLNVDNPK------------ 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHH-HHHhHHHHHHHHHHhc----cCeeEEEEEcCCcc------------
Confidence 35566666655555 37899999999999997 9999999999999886 25788888887321
Q ss_pred cCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 193 FNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 193 ~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
...++++|+| ...|+++++|++|+++..+.|....+++.+.|+.+++.
T Consensus 65 --------------~~~~~~~~~V--------------~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 65 --------------WLPEIDRYRV--------------DGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred --------------cHHHHHHcCC--------------CCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 0124455554 45799999999999999998888889999999998865
No 56
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.4e-12 Score=103.18 Aligned_cols=145 Identities=11% Similarity=0.120 Sum_probs=99.4
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHLR 187 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l~ 187 (271)
=+|++++.+|+++++++++||++||.-.||.|.- - .+...|+.++++|+++ ++.|+++-++. +..+.+.++
T Consensus 6 yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf-T-pQYegLe~Ly~ky~~~---Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 6 YDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF-T-PQYEGLEALYKKYKDK---GFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccceeeccCCCCccHHHhCCcEEEEEEcccccCC-c-HhHHHHHHHHHHHhhC---CcEEEeccccccccCCCCCHHHHH
Confidence 4799999999999999999999999999999984 3 4788999999999976 58888888763 334445555
Q ss_pred HHHHH-cCCceeeec-----C-CHHHHHHHHHH-cCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHH
Q 042757 188 AYLKE-FNSRIVGLT-----G-PVGAIRQMAQE-YRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 188 ~~~~~-~~~~~~~l~-----~-~~~~~~~~~~~-~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
+|.+. |+..|+.+. | +...+.+..++ -+-. ...-.|...-+-||||++|+|+.+|.....|+++.
T Consensus 81 ~fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~-------~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~ 153 (162)
T COG0386 81 KFCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGK-------LGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIE 153 (162)
T ss_pred HHHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCCC-------ccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHH
Confidence 55442 343333321 1 11111111111 0000 00011222335699999999999999999999999
Q ss_pred HHHHHHhhh
Q 042757 260 EEISKEMKK 268 (271)
Q Consensus 260 ~~i~~lL~~ 268 (271)
.+|+++|++
T Consensus 154 ~~Ie~lL~~ 162 (162)
T COG0386 154 LAIEKLLAE 162 (162)
T ss_pred HHHHHHhcC
Confidence 999999863
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.39 E-value=4.4e-12 Score=96.02 Aligned_cols=88 Identities=14% Similarity=0.153 Sum_probs=64.7
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
.+||++||+||++||++ |..+.|.|+++.+++. ++.++.|++|... ...
T Consensus 13 ~~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~~-----~v~~~~vd~d~~~-------------------------~~~ 61 (103)
T cd02985 13 AKGRLVVLEFALKHSGP-SVKIYPTMVKLSRTCN-----DVVFLLVNGDEND-------------------------STM 61 (103)
T ss_pred cCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHCC-----CCEEEEEECCCCh-------------------------HHH
Confidence 46999999999999997 9999999999998872 4777777766310 113
Q ss_pred HHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 209 QMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 209 ~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
.++++|+|. ..|+++++ ++|+++..+.+ .+++++.+.|.
T Consensus 62 ~l~~~~~V~--------------~~Pt~~~~-~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 62 ELCRREKII--------------EVPHFLFY-KDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred HHHHHcCCC--------------cCCEEEEE-eCCeEEEEEeC-CCHHHHHHHHH
Confidence 456666653 36764554 89999988866 55677766654
No 58
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.34 E-value=6e-12 Score=111.35 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=80.6
Q ss_pred CCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeee
Q 042757 121 NRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 121 G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l 200 (271)
.+...+++++|+++||+||++||++ |..++|.|+++.++++ +.+++|++|.... +.|+.+
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~-C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-------------~~fp~~ 215 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPY-CHQQAPILQAFEDRYG------IEVLPVSVDGGPL-------------PGFPNA 215 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCcc-HHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-------------ccCCcc
Confidence 3457788899999999999999997 9999999999998763 7889999985321 112222
Q ss_pred cCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCC-CeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 201 TGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPS-LEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 201 ~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~-G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
..+ ..+++.||| .+.|++||+|++ |++.....|..+.++|.+.|..+..
T Consensus 216 ~~d----~~la~~~gV--------------~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 216 RPD----AGQAQQLKI--------------RTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cCC----HHHHHHcCC--------------CcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 112 234566665 358999999995 5555555577899999888887655
No 59
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.30 E-value=3.9e-11 Score=93.82 Aligned_cols=105 Identities=13% Similarity=0.239 Sum_probs=75.4
Q ss_pred CC-CEEEEEEeeCCCCCChHHHHHHHH---HHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 130 LG-NWVLLYFGYTSSPDVGPEQVQMMA---KAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 130 ~G-k~vll~F~at~Cp~~C~~el~~l~---~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
.| |++||+||++||++ |....+.+. ++.+.+. .++.++.|++|.... ...| .. ...
T Consensus 12 ~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~----~~~~~~~i~~d~~~~----~~~~----~~-------~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPY-CDKLKRDYLNDPAVQAYIR----AHFVVVYINIDGDKE----VTDF----DG-------EAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHH-HHHHHHHhcCcHHHHHHHH----hheEEEEEEccCCce----eecc----CC-------CCc
Confidence 57 99999999999997 999998875 4555554 257777777764211 1111 10 011
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCC-CeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPS-LEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~-G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
....+++.|++. ..|+++++|++ |+++..+.+..+.+.+.+.|+.++++
T Consensus 72 ~~~~l~~~~~v~--------------~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 72 SEKELARKYRVR--------------FTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cHHHHHHHcCCc--------------cccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 224566777653 47999999999 89999998888889999999888875
No 60
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.27 E-value=5.8e-11 Score=88.25 Aligned_cols=85 Identities=21% Similarity=0.249 Sum_probs=66.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+|+++||+||++||++ |....+.++++.+.+.. .+.++.|.+|.. ..
T Consensus 11 ~~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPP-SKELLPLLERLAEEYQG----QFVLAKVNCDAQ----------------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhCC----cEEEEEEeccCC----------------------------HH
Confidence 5789999999999997 99999999999988852 466666655421 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
++++|++. ..|++++++ +|+++..+.+..+.+++.+.|
T Consensus 58 l~~~~~i~--------------~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 58 IAQQFGVQ--------------ALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred HHHHcCCC--------------CCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 56666653 478889997 999998898888888877655
No 61
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.26 E-value=4.2e-11 Score=90.24 Aligned_cols=85 Identities=12% Similarity=0.071 Sum_probs=61.7
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHH
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGA 206 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~ 206 (271)
++++||++||+||++||++ |...+|.+.++.+.++ ++.++.|..|. +.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~-C~~~~p~l~~la~~~~-----~~~~~~vd~~~--~~------------------------ 61 (100)
T cd02999 14 AFNREDYTAVLFYASWCPF-SASFRPHFNALSSMFP-----QIRHLAIEESS--IK------------------------ 61 (100)
T ss_pred HhcCCCEEEEEEECCCCHH-HHhHhHHHHHHHHHhc-----cCceEEEECCC--CC------------------------
Confidence 3578999999999999997 9999999999999885 35555543220 00
Q ss_pred HHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 207 IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 207 ~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
..++++|++ .+.|+++++++ | .+..|.|..+.+.+.+
T Consensus 62 -~~l~~~~~V--------------~~~PT~~lf~~-g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 62 -PSLLSRYGV--------------VGFPTILLFNS-T-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred -HHHHHhcCC--------------eecCEEEEEcC-C-ceeEecCCCCHHHHHh
Confidence 234556654 45789999984 5 6677877777777654
No 62
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.5e-10 Score=92.94 Aligned_cols=145 Identities=12% Similarity=0.174 Sum_probs=108.3
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHLR 187 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l~ 187 (271)
=+|+..|.+|+.++++.++||++||.-.||.|.- -...-..|+.++++|++. ++++++.-+.. +..+.+++.
T Consensus 15 ydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~-T~~~Y~~l~~L~~ky~~~---Gl~ILaFPCNQFg~QEp~~n~Ei~ 90 (171)
T KOG1651|consen 15 YDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGL-TESQYTELNELYEKYKDQ---GLEILAFPCNQFGNQEPGSNEEIL 90 (171)
T ss_pred eeeEEecCCCCCccHHHhCCeEEEEEEccccccc-chhcchhHHHHHHHHhhC---CeEEEEeccccccCcCCCCcHHHH
Confidence 5899999999999999999999999999999985 555677999999999875 58888888764 456667777
Q ss_pred HHHH-HcCCceeee-----cC-CHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 188 AYLK-EFNSRIVGL-----TG-PVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 188 ~~~~-~~~~~~~~l-----~~-~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
.++. +++..|+.+ .| ..+.+.++.+.-.... .+ + .|...-+-||||++|+++.+|+.-.++.++..
T Consensus 91 ~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~~-----lg-~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~ 163 (171)
T KOG1651|consen 91 NFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGGP-----LG-D-DIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEK 163 (171)
T ss_pred HHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCCc-----cc-c-cceeeeEEEeECCCCcEEEeeCCCCCccccch
Confidence 7774 566655443 22 3344555555421100 01 1 23334456999999999999999889999999
Q ss_pred HHHHHhh
Q 042757 261 EISKEMK 267 (271)
Q Consensus 261 ~i~~lL~ 267 (271)
+|+.+|+
T Consensus 164 dIe~lL~ 170 (171)
T KOG1651|consen 164 DIEKLLA 170 (171)
T ss_pred hHHHHhc
Confidence 9999986
No 63
>PRK09381 trxA thioredoxin; Provisional
Probab=99.22 E-value=1.6e-10 Score=88.08 Aligned_cols=90 Identities=14% Similarity=0.112 Sum_probs=69.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++|||+ |....|.++++.+.+.. ++.++.|.+|.. ..
T Consensus 20 ~~~~vvv~f~~~~C~~-C~~~~p~~~~l~~~~~~----~~~~~~vd~~~~----------------------------~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN----------------------------PG 66 (109)
T ss_pred CCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhCC----CcEEEEEECCCC----------------------------hh
Confidence 3789999999999997 99999999999998862 577777776531 12
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
++++|++ ...|+++++ ++|+++..+.+..+.+++.+.|...|+
T Consensus 67 ~~~~~~v--------------~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 67 TAPKYGI--------------RGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred HHHhCCC--------------CcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 3445554 347887888 699999999888888888888887663
No 64
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.2e-10 Score=92.60 Aligned_cols=90 Identities=18% Similarity=0.120 Sum_probs=73.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++|||.|||+||.+ |....|.|+++..+|. ..+.+.-|.+|.. -+
T Consensus 60 S~~PVlVdF~A~WCgP-Ck~l~P~l~~~~~~~~----g~~k~~kvdtD~~----------------------------~e 106 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGP-CKMLGPILEELVSEYA----GKFKLYKVDTDEH----------------------------PE 106 (150)
T ss_pred cCCCEEEEEecCcCcc-HhHhhHHHHHHHHhhc----CeEEEEEEccccc----------------------------cc
Confidence 3689999999999998 9999999999999985 3688888887732 22
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
++.+|+| ...|++++++ +|+.+.++.+..+.+.+.+.|++.|+
T Consensus 107 la~~Y~I--------------~avPtvlvfk-nGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 107 LAEDYEI--------------SAVPTVLVFK-NGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred hHhhcce--------------eeeeEEEEEE-CCEEeeeecccCCHHHHHHHHHHHhc
Confidence 4555554 4478878885 99999999999999999999998875
No 65
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.20 E-value=1.7e-10 Score=88.50 Aligned_cols=89 Identities=11% Similarity=0.035 Sum_probs=68.7
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
..|+++||+||++||++ |....|.+.++.++++.. ++.++-|.+|.+ .
T Consensus 22 ~~~~~vlV~F~a~wC~~-C~~~~p~~~~l~~~~~~~---~v~~~~vd~d~~----------------------------~ 69 (111)
T cd02963 22 SFKKPYLIKITSDWCFS-CIHIEPVWKEVIQELEPL---GVGIATVNAGHE----------------------------R 69 (111)
T ss_pred cCCCeEEEEEECCccHh-HHHhhHHHHHHHHHHHhc---CceEEEEecccc----------------------------H
Confidence 46899999999999997 999999999999998742 466666665521 2
Q ss_pred HHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 209 QMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 209 ~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
.++++|+| ...|++++++ +|+++..+.+..+.+.+.+.|++
T Consensus 70 ~l~~~~~V--------------~~~Pt~~i~~-~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 70 RLARKLGA--------------HSVPAIVGII-NGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHHHcCC--------------ccCCEEEEEE-CCEEEEEecCCCCHHHHHHHHhc
Confidence 34566655 3478888885 99999888888888887776654
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.19 E-value=2e-10 Score=86.75 Aligned_cols=86 Identities=15% Similarity=0.044 Sum_probs=62.7
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.|++++|+||++||++ |....|.+.+++++++. ..+.++.|.+| . .+
T Consensus 16 ~~~~vvv~F~a~wC~~-Ck~~~p~l~~~~~~~~~---~~~~~~~vd~d----~-------------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGP-CKAVVSLFKKIKNELGD---DLLHFATAEAD----T-------------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHh-HHHHhHHHHHHHHHcCC---CcEEEEEEeCC----C-------------------------HH
Confidence 4889999999999997 99999999999988863 24666666655 1 12
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
++++|++. ..|+ |++.++|+++.+..+ .+++.+.+.|++
T Consensus 63 ~~~~~~v~--------------~~Pt-~~~~~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 63 TLKRYRGK--------------CEPT-FLFYKNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHHHcCCC--------------cCcE-EEEEECCEEEEEEec-CChHHHHHHHhh
Confidence 34555543 3665 455579999988866 477777777764
No 67
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=3.3e-10 Score=90.76 Aligned_cols=143 Identities=16% Similarity=0.107 Sum_probs=108.8
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCCC-EEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLGN-WVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~Gk-~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
+|.+. |||+|.|.||+.|+|.++.|+ +++++|+.....+-|..+...++.-|+++++. ..+|+++|.| +.
T Consensus 65 ~Gd~i--PD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---~aeV~GlS~D----~s 135 (211)
T KOG0855|consen 65 KGDAI--PDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---GAEVIGLSGD----DS 135 (211)
T ss_pred cCCcC--CCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---CceEEeeccC----ch
Confidence 34444 999999999999999999886 88888877777667999999999999999864 5788999976 66
Q ss_pred HHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
...++|..+++..+..|++... ++.+.+|+.-.+- +--.....||+|..|-....+..+++|+.-.++-.
T Consensus 136 ~sqKaF~sKqnlPYhLLSDpk~---e~ik~lGa~k~p~-------gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~ 205 (211)
T KOG0855|consen 136 ASQKAFASKQNLPYHLLSDPKN---EVIKDLGAPKDPF-------GGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEAL 205 (211)
T ss_pred HHHHHhhhhccCCeeeecCcch---hHHHHhCCCCCCC-------CCcccceEEEEecCCeEEEEEecccCccccHHHHH
Confidence 7789999999999999987654 4567777643221 11123566999988877777777788876554444
Q ss_pred HHh
Q 042757 264 KEM 266 (271)
Q Consensus 264 ~lL 266 (271)
+.|
T Consensus 206 k~~ 208 (211)
T KOG0855|consen 206 KFL 208 (211)
T ss_pred HHH
Confidence 433
No 68
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=9e-10 Score=87.07 Aligned_cols=129 Identities=15% Similarity=0.206 Sum_probs=104.1
Q ss_pred CCCCCCCcCCCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCC
Q 042757 103 NRVTGPIIGGPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDT 182 (271)
Q Consensus 103 ~~~~~~~~~p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt 182 (271)
..+|.++ |+|++.+.+.+.++++++.||..+|+.+.+=-.++|-.+...+++....++ ++.++.||.| .
T Consensus 18 ~~vGd~a--p~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----~~~Vl~IS~D----L 86 (158)
T COG2077 18 PQVGDKA--PDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----NTVVLCISMD----L 86 (158)
T ss_pred CccCCcC--CceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----CcEEEEEeCC----C
Confidence 4466666 999999999999999999999999999999998899999999999888775 5888999975 8
Q ss_pred HHHHHHHHHHcCCc-eeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 183 PAHLRAYLKEFNSR-IVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 183 ~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
|...++|....|.+ ...+++-.+ ..+.++||+....-.-.| -...++|++|.+|+|++.-
T Consensus 87 PFAq~RfC~aeGi~nv~~lSd~r~--~~Fge~yGv~I~egpL~g-----LlARaV~V~De~g~V~y~e 147 (158)
T COG2077 87 PFAQKRFCGAEGIENVITLSDFRD--RAFGENYGVLINEGPLAG-----LLARAVFVLDENGKVTYSE 147 (158)
T ss_pred hhHHhhhhhhcCcccceEhhhhhh--hhhhHhhCEEeccccccC-----eeeeEEEEEcCCCcEEEEE
Confidence 99999999999864 666655333 668899999764221011 1267899999999999874
No 69
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.17 E-value=1.7e-10 Score=87.13 Aligned_cols=90 Identities=12% Similarity=0.107 Sum_probs=66.5
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGA 206 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~ 206 (271)
.||++||+||++||++ |....+.+ .++.+.+++ ++.++.|.++. +. +.
T Consensus 10 ~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~vd~~~--~~----------------------~~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVT-CKVNEKVVFSDPEVQAALKK----DVVLLRADWTK--ND----------------------PE 60 (104)
T ss_pred cCCeEEEEEEcchhHH-HHHHHHHhcCCHHHHHHHhC----CeEEEEEecCC--CC----------------------HH
Confidence 5899999999999997 99998877 567666652 56666666542 11 11
Q ss_pred HHHHHHHcCceeeeeccCCCcceeecceeEEEEcC-CCeEEEEecCCCCHHHHHHHH
Q 042757 207 IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNP-SLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 207 ~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~-~G~iv~~~~~~~~~~~l~~~i 262 (271)
...++++|++ ...|+++++++ +|+++.++.+..+.+++.+.|
T Consensus 61 ~~~~~~~~~i--------------~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGV--------------FGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHHHcCC--------------CCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 2345666654 34799999999 999999998888888877665
No 70
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=2.9e-10 Score=91.79 Aligned_cols=143 Identities=14% Similarity=0.182 Sum_probs=101.7
Q ss_pred CCCCCcCCCeEEE---cCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCC
Q 042757 105 VTGPIIGGPFTLI---DTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRD 181 (271)
Q Consensus 105 ~~~~~~~p~f~l~---d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D 181 (271)
+.+|+ |+|.-+ |-.=+.++|++++||+++++|+.-.-..+||.|+-.+...+.++++. +-+|+++|+|
T Consensus 6 ~~~p~--p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---n~eVig~S~D---- 76 (196)
T KOG0852|consen 6 VFKPA--PDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---NTEVLGISTD---- 76 (196)
T ss_pred cCCCC--CCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---CCeEEEEecc----
Confidence 34444 787744 33445899999999999999998888899999999999999999975 5789999987
Q ss_pred CHHHHHHHHHH----cC---CceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCC
Q 042757 182 TPAHLRAYLKE----FN---SRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYT 254 (271)
Q Consensus 182 t~~~l~~~~~~----~~---~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~ 254 (271)
+...+-+|.+. -+ .+++.+.+. ..+++++|||+-... |- .-...||||++|.++..-..++.
T Consensus 77 S~fshlAW~ntprk~gGlg~~~iPllsD~---~~~IsrdyGvL~~~~---G~-----~lRglfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 77 SVFSHLAWINTPRKQGGLGPLNIPLLSDL---NHEISRDYGVLKEDE---GI-----ALRGLFIIDPDGILRQITINDLP 145 (196)
T ss_pred chhhhhhHhcCchhhCCcCccccceeecc---chhhHHhcCceecCC---Cc-----ceeeeEEEccccceEEeeecccC
Confidence 55666677643 22 357777654 367899999985432 21 13567999999999876544443
Q ss_pred HHHHHHHHHHHhh
Q 042757 255 AEELAEEISKEMK 267 (271)
Q Consensus 255 ~~~l~~~i~~lL~ 267 (271)
...-.++..+|++
T Consensus 146 vgRSVdE~lRLvq 158 (196)
T KOG0852|consen 146 VGRSVDETLRLVQ 158 (196)
T ss_pred CCccHHHHHHHHH
Confidence 3333344444443
No 71
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.12 E-value=3.7e-10 Score=86.24 Aligned_cols=109 Identities=17% Similarity=0.137 Sum_probs=68.2
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.||+++|+||.+|||. |....+.+.+..+-.. ....++.++.+.++. ..+...++.+..+... -.....+
T Consensus 4 ~~k~~v~~F~~~~C~~-C~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPY-CKKLEKELFPDNDVAR-YLKDDFQVIFVNIDD---SRDESEAVLDFDGQKN-----VRLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HH-HHHHHHHHHHHHHHHC-EEHCECEEEECESHS---HHHHHHHHHSHTCHSS-----CHHHHHH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHHH-HhhcCeEEEEEecCC---cccccccccccccchh-----hhHHHHH
Confidence 5899999999999997 9988888776544222 111357777887753 2222333433322111 1122345
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
+++.|||. .+|+++++|++|+++..+.|-.+++++.+.|
T Consensus 74 l~~~~~v~--------------gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVN--------------GTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHTT----------------SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHcCCC--------------ccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 77777654 5899999999999999898888998887654
No 72
>PRK10996 thioredoxin 2; Provisional
Probab=99.11 E-value=1.1e-09 Score=87.41 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=67.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+|+++|+||++||++ |....+.+.++++++. .++.++.|.+|. . .+
T Consensus 51 ~~k~vvv~F~a~wC~~-C~~~~~~l~~l~~~~~----~~v~~~~vd~~~---~-------------------------~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGP-CRNFAPIFEDVAAERS----GKVRFVKVNTEA---E-------------------------RE 97 (139)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhC----CCeEEEEEeCCC---C-------------------------HH
Confidence 4899999999999997 9999999999998765 256665555431 1 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
++++|+|. ..|+++++ ++|+++..+.+..+.+++.+.|++++
T Consensus 98 l~~~~~V~--------------~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 98 LSARFRIR--------------SIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred HHHhcCCC--------------ccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 55666653 46777666 59999999988888888888887654
No 73
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.10 E-value=4.5e-10 Score=84.39 Aligned_cols=94 Identities=14% Similarity=0.043 Sum_probs=68.0
Q ss_pred CCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCcee
Q 042757 119 TENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIV 198 (271)
Q Consensus 119 ~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~ 198 (271)
.+++.+...-..+++++|+||++||++ |....|.+.++.++++ ..+.+..|++|..
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~----~~~~~~~vd~~~~------------------- 61 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSH-CHDLAPTWREFAKEMD----GVIRIGAVNCGDD------------------- 61 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChH-HHHhHHHHHHHHHHhc----CceEEEEEeCCcc-------------------
Confidence 334434333335789999999999997 9999999999999886 2577777777631
Q ss_pred eecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 199 GLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 199 ~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
..++++|++. ..|+++++ ++|+.+..|.+..+.+.+.+
T Consensus 62 ---------~~~~~~~~v~--------------~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 62 ---------RMLCRSQGVN--------------SYPSLYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ---------HHHHHHcCCC--------------ccCEEEEE-cCCCCcccCCCCCCHHHHHh
Confidence 2355666553 46787777 78988888888888777653
No 74
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.05 E-value=9e-10 Score=82.16 Aligned_cols=90 Identities=12% Similarity=0.044 Sum_probs=67.7
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||++||+. |....+.++++.+.+...+ ++.++.+.+|. ...
T Consensus 12 ~~~~~~i~f~~~~C~~-c~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~----------------------------~~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGH-CKNLAPEYEKLAKELKGDP--DIVLAKVDATA----------------------------EKD 60 (102)
T ss_pred cCCcEEEEEECCCCHH-HHhhChHHHHHHHHhccCC--ceEEEEEEccc----------------------------hHH
Confidence 6899999999999997 9999999999998886432 46655554431 134
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
+++.|++. ..|+++++++++. +..|.+..+.+++.+.|++.
T Consensus 61 ~~~~~~i~--------------~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 61 LASRFGVS--------------GFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred HHHhCCCC--------------cCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 55666653 4788999998887 66777788888887777654
No 75
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.03 E-value=4.2e-09 Score=78.61 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=64.5
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||+. |....+.++++.+++. .++.++.|.+|. . .+
T Consensus 12 ~~~~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~----~~v~~~~id~d~---~-------------------------~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGP-CRTLKPILNKVIDEFD----GAVHFVEIDIDE---D-------------------------QE 58 (97)
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHHhC----CceEEEEEECCC---C-------------------------HH
Confidence 4789999999999997 9999999999998876 257666666542 1 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
++++|++ .+.|++++++ +|+++.++.+..+.+++.+.|
T Consensus 59 l~~~~~v--------------~~vPt~~i~~-~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 59 IAEAAGI--------------MGTPTVQFFK-DKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHCCC--------------eeccEEEEEE-CCeEEEEEeCCccHHHHHHhh
Confidence 4555654 3478889995 899999998877777766554
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.03 E-value=2.3e-09 Score=80.37 Aligned_cols=86 Identities=16% Similarity=0.127 Sum_probs=60.5
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
++|+ +||+||++||++ |....|.+.++.+.+.. .++.+..|.+|.+ .
T Consensus 15 ~~~~-~lv~f~a~wC~~-C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~----------------------------~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPA-CQQLQPEWEEFADWSDD---LGINVAKVDVTQE----------------------------P 61 (101)
T ss_pred hCCC-EEEEEECCCCHH-HHHHhHHHHHHHHhhcc---CCeEEEEEEccCC----------------------------H
Confidence 4677 579999999997 99999999999886542 2466655554421 1
Q ss_pred HHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 209 QMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 209 ~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
.++++|++ ...|+++++ ++|++ ..+.+..+.+++.+.|+
T Consensus 62 ~~~~~~~i--------------~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 62 GLSGRFFV--------------TALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred hHHHHcCC--------------cccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 24555654 346777776 88986 67777788887766654
No 77
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.01 E-value=4e-09 Score=79.69 Aligned_cols=89 Identities=11% Similarity=0.025 Sum_probs=62.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||++||++ |....|.+.+++++++..+ ..+.+..+.++.. ..
T Consensus 14 ~~~~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~~~~-~~~~~~~vd~~~~----------------------------~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGH-CKKLEPVWNEVGAELKSSG-SPVRVGKLDATAY----------------------------SS 63 (104)
T ss_pred cCCeEEEEEECCCCHH-HHhhChHHHHHHHHHHhcC-CcEEEEEEECccC----------------------------Hh
Confidence 4679999999999997 9999999999999986543 2455555554311 12
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
+++.|++ .+.|++++++ +| ....+.+..+.+++.+.+++
T Consensus 64 ~~~~~~I--------------~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 64 IASEFGV--------------RGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HHhhcCC--------------ccccEEEEEc-CC-CceeecCCCCHHHHHHHHHh
Confidence 4455554 4578889995 44 45667777888887776664
No 78
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.00 E-value=5e-09 Score=84.83 Aligned_cols=80 Identities=16% Similarity=0.012 Sum_probs=60.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||++||++ |....|.++++.+++.. .++.++.|.+|.. .+
T Consensus 46 ~~~~vvV~Fya~wC~~-Ck~l~p~l~~la~~~~~---~~v~f~~VDvd~~----------------------------~~ 93 (152)
T cd02962 46 KRVTWLVEFFTTWSPE-CVNFAPVFAELSLKYNN---NNLKFGKIDIGRF----------------------------PN 93 (152)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHccc---CCeEEEEEECCCC----------------------------HH
Confidence 4679999999999997 99999999999998753 2588888877632 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~ 250 (271)
++++|+|.. .|++.+.|++++.. +|+.+.++.
T Consensus 94 la~~~~V~~--------~~~v~~~PT~ilf~-~Gk~v~r~~ 125 (152)
T cd02962 94 VAEKFRVST--------SPLSKQLPTIILFQ-GGKEVARRP 125 (152)
T ss_pred HHHHcCcee--------cCCcCCCCEEEEEE-CCEEEEEEe
Confidence 566676642 24455678877775 999998874
No 79
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.00 E-value=1.9e-09 Score=80.64 Aligned_cols=83 Identities=12% Similarity=0.090 Sum_probs=61.0
Q ss_pred EEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHH
Q 042757 133 WVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQ 212 (271)
Q Consensus 133 ~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 212 (271)
++||+||++||++ |....|.+++++++++... .++.++.|.+|.. ..+++
T Consensus 18 ~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~~-~~~~~~~vd~~~~----------------------------~~~~~ 67 (102)
T cd03005 18 NHFVKFFAPWCGH-CKRLAPTWEQLAKKFNNEN-PSVKIAKVDCTQH----------------------------RELCS 67 (102)
T ss_pred CEEEEEECCCCHH-HHHhCHHHHHHHHHHhccC-CcEEEEEEECCCC----------------------------hhhHh
Confidence 5999999999997 9999999999999987521 2566666655421 12445
Q ss_pred HcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 213 EYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 213 ~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
.|++ ...|+++++ ++|+.+..+.+..+.+++.+
T Consensus 68 ~~~v--------------~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 68 EFQV--------------RGYPTLLLF-KDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred hcCC--------------CcCCEEEEE-eCCCeeeEeeCCCCHHHHHh
Confidence 5554 347888888 68888888888788776654
No 80
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.98 E-value=4.6e-09 Score=79.12 Aligned_cols=84 Identities=13% Similarity=-0.010 Sum_probs=63.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||++ |....|.+.++.+++. ..+.+..|.+|.. ..
T Consensus 18 ~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~----~~~~~~~vd~~~~----------------------------~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGP-CQALLPELRKAARALK----GKVKVGSVDCQKY----------------------------ES 64 (104)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhc----CCcEEEEEECCch----------------------------HH
Confidence 4679999999999997 9999999999999884 2566666665421 34
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCC-HHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYT-AEELAE 260 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~-~~~l~~ 260 (271)
++++|++. ..|++++++..|+.+..|.+..+ .+++.+
T Consensus 65 ~~~~~~i~--------------~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 65 LCQQANIR--------------AYPTIRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred HHHHcCCC--------------cccEEEEEcCCCCCceEccCCCCCHHHHHh
Confidence 56666653 47888999877688888877765 776654
No 81
>PHA02278 thioredoxin-like protein
Probab=98.97 E-value=7.1e-09 Score=78.54 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=62.8
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+++++||+|||+||++ |....|.+.++.+++. .++.++.|.+|.++.. ...
T Consensus 13 ~~~~vvV~F~A~WCgp-Ck~m~p~l~~l~~~~~----~~~~~~~vdvd~~~~d------------------------~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGK-CEILKSVIPMFQESGD----IKKPILTLNLDAEDVD------------------------REK 63 (103)
T ss_pred CCCcEEEEEECCCCHH-HHhHHHHHHHHHhhhc----CCceEEEEECCccccc------------------------cHH
Confidence 5789999999999997 9999999999987643 2466788888742110 123
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
++++|+|. ..|+++++ ++|+.+.++.|..+.+.+.+
T Consensus 64 l~~~~~I~--------------~iPT~i~f-k~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 64 AVKLFDIM--------------STPVLIGY-KDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred HHHHCCCc--------------cccEEEEE-ECCEEEEEEeCCCCHHHHHh
Confidence 55666543 46776666 48999999977777766543
No 82
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.95 E-value=4.9e-09 Score=79.49 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=65.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.|+++||+||++||++ |....|.+.++.+.+. .++.++.|++|.+. ...
T Consensus 17 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~a~~~~----~~~~~~~v~~~~~~--------------------------~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGH-CKNLKPEYAKAAKELD----GLVQVAAVDCDEDK--------------------------NKP 65 (109)
T ss_pred CCCeEEEEEECCCCHH-HHhhChHHHHHHHHhc----CCceEEEEecCccc--------------------------cHH
Confidence 4789999999999997 9999999999998876 25777777776310 134
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCC----eEEEEecCCCCHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSL----EVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G----~iv~~~~~~~~~~~l~~~i 262 (271)
++++|++. ..|+++++++.+ .+...|.+..+.+.+.+.|
T Consensus 66 ~~~~~~i~--------------~~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 66 LCGKYGVQ--------------GFPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHcCCC--------------cCCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 55666553 478999999887 3556677777777776554
No 83
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.94 E-value=1.5e-08 Score=80.74 Aligned_cols=93 Identities=10% Similarity=0.125 Sum_probs=68.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.++++||.|||+||++ |....|.|.++.+++++ .+.++-|.+|.. ..
T Consensus 22 ~~~lVVvdF~A~WCgp-Ck~m~p~l~~la~~~~~----~~~~~kVDVDe~----------------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDET-CMQMDEVLASVAETIKN----FAVIYLVDITEV----------------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcCC----ceEEEEEECCCC----------------------------HH
Confidence 4689999999999998 99999999999998862 467777777732 34
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCe-EEEEecC--------CCCHHHHHHHHHHHhhhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLE-VVRCFGV--------EYTAEELAEEISKEMKKA 269 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~-iv~~~~~--------~~~~~~l~~~i~~lL~~~ 269 (271)
++..|++. ..|+++++=++|+ .+++..| ..+.+++++.|+.+++..
T Consensus 69 la~~y~I~--------------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 69 FNTMYELY--------------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred HHHHcCcc--------------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 56666664 2445554556888 6677655 467788888888887653
No 84
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.94 E-value=3.8e-09 Score=79.16 Aligned_cols=88 Identities=19% Similarity=0.082 Sum_probs=62.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||++||++ |....+.++++.+.+.+.+ .+.++.|.++. +. ...
T Consensus 16 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~~--~~~~~~id~~~--~~------------------------~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGH-CKKMKPEFTKAATELKEDG--KGVLAAVDCTK--PE------------------------HDA 66 (104)
T ss_pred hCCCEEEEEECCCCHH-HHHhCHHHHHHHHHHhhCC--ceEEEEEECCC--Cc------------------------cHH
Confidence 5779999999999997 9999999999999887532 45555554442 10 023
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEE 261 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~ 261 (271)
+++.|++. ..|++ ++.++|+++..+.+..+.+.+.+.
T Consensus 67 ~~~~~~i~--------------~~Pt~-~~~~~g~~~~~~~g~~~~~~l~~~ 103 (104)
T cd02997 67 LKEEYNVK--------------GFPTF-KYFENGKFVEKYEGERTAEDIIEF 103 (104)
T ss_pred HHHhCCCc--------------cccEE-EEEeCCCeeEEeCCCCCHHHHHhh
Confidence 55666653 35654 555689988889888888777553
No 85
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.93 E-value=1.4e-08 Score=75.41 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=66.3
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
++.++|+||++||+. |....+.++++.+.+. .++.++.|..|.. ..+
T Consensus 14 ~~~vvi~f~~~~C~~-C~~~~~~l~~~~~~~~----~~~~~~~vd~~~~----------------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGP-CKMIAPILEELAKEYE----GKVKFVKLNVDEN----------------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHH-HHHhCHHHHHHHHHhc----CCeEEEEEECCCC----------------------------HHH
Confidence 579999999999997 9999999999988775 2577777765521 124
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
+++|++. ..|+++++ ++|+++..+.+..+.+++.+.|++.|
T Consensus 61 ~~~~~v~--------------~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 61 AAKYGIR--------------SIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred HHHcCCC--------------cCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 5556553 47888888 68888888877777788887777643
No 86
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.93 E-value=5.8e-09 Score=80.14 Aligned_cols=88 Identities=14% Similarity=0.123 Sum_probs=62.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.++++||.|||+||++ |+...|.|.++.+++. ..+.++-|.+|.. ..
T Consensus 13 ~~~~vVV~F~A~WCgp-Ck~m~P~le~la~~~~----~~v~f~kVDvD~~----------------------------~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPV-CMQMDEVLAKIAEDVS----NFAVIYLVDIDEV----------------------------PD 59 (114)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcc----CceEEEEEECCCC----------------------------HH
Confidence 4679999999999998 9999999999999886 2467777776631 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC----------CCHHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE----------YTAEELAEEISKE 265 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~----------~~~~~l~~~i~~l 265 (271)
+++.|+|. ..|+++++ ++|+.+.+..+. .+.+++++.|+.+
T Consensus 60 la~~~~V~--------------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 60 FNKMYELY--------------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred HHHHcCCC--------------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 55666653 46776777 489999887332 3345556655544
No 87
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=5e-09 Score=91.90 Aligned_cols=90 Identities=17% Similarity=0.062 Sum_probs=73.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+-+||||+||++||++ |...+|.|.++..+++ .++.++-|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~-c~qL~p~Lekla~~~~----G~f~LakvN~D~~----------------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGP-CKQLTPTLEKLAAEYK----GKFKLAKVNCDAE----------------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCch-HHHHHHHHHHHHHHhC----CceEEEEecCCcc----------------------------hh
Confidence 5679999999999997 9999999999999987 3688878887742 33
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
++.+|||. ..|++|++ .+|+-+--|.|....+.+.+.|.+++.
T Consensus 89 vAaqfgiq--------------sIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~ 131 (304)
T COG3118 89 VAAQFGVQ--------------SIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLP 131 (304)
T ss_pred HHHHhCcC--------------cCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcC
Confidence 66777764 47888888 599999999887777788888887764
No 88
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.92 E-value=1.4e-08 Score=87.26 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=69.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||++ |....|.++++.++++. .+.+..|.+|.+ ..
T Consensus 51 ~~~~vlV~FyApWC~~-Ck~~~P~~e~la~~~~~----~v~~~~VD~~~~----------------------------~~ 97 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSH-CRKMAPAWERLAKALKG----QVNVADLDATRA----------------------------LN 97 (224)
T ss_pred CCCCEEEEEECCCChH-HHHHHHHHHHHHHHcCC----CeEEEEecCccc----------------------------HH
Confidence 3578999999999997 99999999999998862 455544433310 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKA 269 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~~ 269 (271)
++++|+| ...|++++++ +|+++..+.+..+.+++.+.+.+.++..
T Consensus 98 l~~~~~I--------------~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 98 LAKRFAI--------------KGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred HHHHcCC--------------CcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 5566655 3478889998 8998888888889999998888877643
No 89
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.91 E-value=7.8e-09 Score=78.60 Aligned_cols=88 Identities=18% Similarity=0.106 Sum_probs=62.8
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccC--CCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKN--LKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~--~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
.+++++|+||++||++ |....|.++++.+.+++... .++.+..|.+|.+
T Consensus 17 ~~~~vlv~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~---------------------------- 67 (108)
T cd02996 17 SAELVLVNFYADWCRF-SQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE---------------------------- 67 (108)
T ss_pred cCCEEEEEEECCCCHH-HHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC----------------------------
Confidence 4689999999999997 99999999999988864321 2466655655421
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeE-EEEecCCCCHHHHHHH
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEV-VRCFGVEYTAEELAEE 261 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~i-v~~~~~~~~~~~l~~~ 261 (271)
..++++|++. ..|++++. ++|++ ...|.+..+.+++.+.
T Consensus 68 ~~l~~~~~v~--------------~~Ptl~~~-~~g~~~~~~~~g~~~~~~l~~f 107 (108)
T cd02996 68 SDIADRYRIN--------------KYPTLKLF-RNGMMMKREYRGQRSVEALAEF 107 (108)
T ss_pred HHHHHhCCCC--------------cCCEEEEE-eCCcCcceecCCCCCHHHHHhh
Confidence 2356677653 46887887 68884 4667677777776553
No 90
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.89 E-value=1e-08 Score=78.21 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.||++||.||++||++ |....|.+.++.+.++. .++.++.|.+|.+ . ..
T Consensus 20 ~~k~vlv~f~a~wC~~-C~~~~~~~~~la~~~~~---~~~~~~~vd~d~~--~-------------------------~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPF-CQAMEASYEELAEKLAG---SNVKVAKFNADGE--Q-------------------------RE 68 (109)
T ss_pred cCCCEEEEEECCCCHH-HHHHhHHHHHHHHHhcc---CCeEEEEEECCcc--c-------------------------hh
Confidence 5799999999999997 99999999999998873 2577777777631 0 11
Q ss_pred HHH-HcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC-CCHHHHHH
Q 042757 210 MAQ-EYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE-YTAEELAE 260 (271)
Q Consensus 210 ~~~-~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~-~~~~~l~~ 260 (271)
+++ .|+ +.+.|+++++++++.....|.++ -+.+.+..
T Consensus 69 ~~~~~~~--------------v~~~Pti~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 69 FAKEELQ--------------LKSFPTILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred hHHhhcC--------------CCcCCEEEEEcCCCCCceeccCCCCCHHHHHh
Confidence 232 243 44579999999888877888764 57776644
No 91
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.87 E-value=3.4e-09 Score=82.13 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=61.6
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHH
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGA 206 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~ 206 (271)
+...||++||+||++||++ |....+.+.+....... ...++.|.+|...+.
T Consensus 15 A~~~~kpVlV~F~a~WC~~-C~~~~~~~~~~~~~~~~----~~~fv~v~vd~~~~~------------------------ 65 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGA-CKALKPKFAESKEISEL----SHNFVMVNLEDDEEP------------------------ 65 (117)
T ss_pred HHHcCCcEEEEEeCCcCHH-HHHHHHHHhhhHHHHhh----cCcEEEEEecCCCCc------------------------
Confidence 3446899999999999997 99999999887664432 234566676632111
Q ss_pred HHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe---cCCCCHHHHHHHHHHHhh
Q 042757 207 IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF---GVEYTAEELAEEISKEMK 267 (271)
Q Consensus 207 ~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~---~~~~~~~~l~~~i~~lL~ 267 (271)
..+.|++. + . ..|+++++|++|+++..+ .+..+.+...+.|..+.+
T Consensus 66 ---~~~~~~~~-------g-~----~vPt~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 66 ---KDEEFSPD-------G-G----YIPRILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred ---hhhhcccC-------C-C----ccceEEEECCCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 01122221 0 0 179999999999998753 344555555555554443
No 92
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.85 E-value=2.7e-08 Score=76.65 Aligned_cols=83 Identities=7% Similarity=-0.076 Sum_probs=62.1
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.++++||.||++||++ |+...|.+.++.+.+++ .+.++-|.+|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~-Ck~l~p~~~~la~~~~~----~v~~~~Vd~d~~----------------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQ-SQAARQEFEQVAQKLSD----QVLFVAINCWWP----------------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------------------hH
Confidence 5689999999999998 99999999999999862 466666666521 12
Q ss_pred HH-HHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 210 MA-QEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 210 ~~-~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
++ ++|+| .+.|++.+. ++|+....|.+..+.+.+..
T Consensus 75 l~~~~~~I--------------~~~PTl~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 75 KCRKQKHF--------------FYFPVIHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HHHHhcCC--------------cccCEEEEE-ECCccceEEeCCCCHHHHHh
Confidence 33 34544 346777777 68888888888888877754
No 93
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.84 E-value=5e-08 Score=72.65 Aligned_cols=87 Identities=20% Similarity=0.214 Sum_probs=68.5
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
++++||+|++.||++ |....|.+.++.+.+.. ++.++.|..+. . ..+
T Consensus 17 ~~~vvv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~vd~~~---~-------------------------~~l 63 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPP-CKAFKPILEKLAKEYKD----NVKFAKVDCDE---N-------------------------KEL 63 (103)
T ss_dssp SSEEEEEEESTTSHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTT---S-------------------------HHH
T ss_pred CCCEEEEEeCCCCCc-cccccceeccccccccc----ccccchhhhhc---c-------------------------chh
Confidence 689999999999997 99999999999998874 56666666542 1 345
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
+++|++. ..|+++++. +|+.+..+.+..+.+.|.+.|+++
T Consensus 64 ~~~~~v~--------------~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 64 CKKYGVK--------------SVPTIIFFK-NGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp HHHTTCS--------------SSSEEEEEE-TTEEEEEEESSSSHHHHHHHHHHH
T ss_pred hhccCCC--------------CCCEEEEEE-CCcEEEEEECCCCHHHHHHHHHcC
Confidence 6666653 478878775 778888888889999999888763
No 94
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.83 E-value=1.6e-08 Score=75.69 Aligned_cols=88 Identities=13% Similarity=0.042 Sum_probs=64.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||++ |....+.+.++.+.++.. .++.++.|..+.. ...
T Consensus 17 ~~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~---------------------------~~~ 66 (105)
T cd02998 17 DKKDVLVEFYAPWCGH-CKNLAPEYEKLAAVFANE--DDVVIAKVDADEA---------------------------NKD 66 (105)
T ss_pred CCCcEEEEEECCCCHH-HHhhChHHHHHHHHhCCC--CCEEEEEEECCCc---------------------------chh
Confidence 3679999999999997 999999999999988632 2466655554420 023
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEE 261 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~ 261 (271)
++++|++ .+.|+++++++.|+....|.+..+.+++.+.
T Consensus 67 ~~~~~~i--------------~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~ 104 (105)
T cd02998 67 LAKKYGV--------------SGFPTLKFFPKGSTEPVKYEGGRDLEDLVKF 104 (105)
T ss_pred hHHhCCC--------------CCcCEEEEEeCCCCCccccCCccCHHHHHhh
Confidence 5566654 3478999999887777778777877777553
No 95
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.82 E-value=4.7e-08 Score=72.43 Aligned_cols=83 Identities=10% Similarity=0.142 Sum_probs=59.0
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
+++++|+||++||++ |....+.|.++.+.+. .++.++-|..+. ...+
T Consensus 14 ~~~v~v~f~~~~C~~-C~~~~~~l~~l~~~~~----~~i~~~~vd~~~----------------------------~~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEP-CKQMNQVFEELAKEAF----PSVLFLSIEAEE----------------------------LPEI 60 (97)
T ss_pred CCEEEEEEECCCCHH-HHHHhHHHHHHHHHhC----CceEEEEEcccc----------------------------CHHH
Confidence 689999999999997 9999999999998862 256665554321 1234
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
+++|++. ..|++++++ +|+++..+.+ .+++++.+.|
T Consensus 61 ~~~~~i~--------------~~Pt~~~~~-~g~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 61 SEKFEIT--------------AVPTFVFFR-NGTIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred HHhcCCc--------------cccEEEEEE-CCEEEEEEeC-CCHHHHHHhh
Confidence 5566543 468777775 8999888755 4566666554
No 96
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.79 E-value=1e-07 Score=74.40 Aligned_cols=94 Identities=9% Similarity=0.098 Sum_probs=63.2
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC--CCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR--DTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~--Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
.|+.++|+|+++|||+ |+...|.|.++.++. ++.+..|.+|... +.. +.+.+
T Consensus 22 ~~~~~iv~f~~~~Cp~-C~~~~P~l~~~~~~~------~~~~y~vdvd~~~~~~~~-------------------~~~~~ 75 (122)
T TIGR01295 22 KKETATFFIGRKTCPY-CRKFSGTLSGVVAQT------KAPIYYIDSENNGSFEMS-------------------SLNDL 75 (122)
T ss_pred cCCcEEEEEECCCChh-HHHHhHHHHHHHHhc------CCcEEEEECCCccCcCcc-------------------cHHHH
Confidence 4788999999999998 999999999998862 4667888887422 110 11123
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC-CCCHHHHHH
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV-EYTAEELAE 260 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~-~~~~~~l~~ 260 (271)
.++.+.|++. +.+..+|+++++ .+|+.+..+.+ ..+.++|.+
T Consensus 76 ~~~~~~~~i~----------~~i~~~PT~v~~-k~Gk~v~~~~G~~~~~~~l~~ 118 (122)
T TIGR01295 76 TAFRSRFGIP----------TSFMGTPTFVHI-TDGKQVSVRCGSSTTAQELQD 118 (122)
T ss_pred HHHHHHcCCc----------ccCCCCCEEEEE-eCCeEEEEEeCCCCCHHHHHH
Confidence 3444455432 234458888877 49999888744 555666544
No 97
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.5e-08 Score=77.71 Aligned_cols=149 Identities=16% Similarity=0.263 Sum_probs=100.1
Q ss_pred CCCCCcCCCeEEEcCCCCeeecCcCCC-CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCC-
Q 042757 105 VTGPIIGGPFTLIDTENRLVTENNFLG-NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDT- 182 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~v~l~~~~G-k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt- 182 (271)
+|... |+|+..+..|+ +.+.|+.| -|.+|+-......++|..|+..+.++..++.++ +|..++.|+|.-.+.
T Consensus 8 lgd~~--PNfea~Tt~g~-i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---nvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 8 LGDTV--PNFEADTTVGK-IKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---NVKLIALSVDDVESHK 81 (224)
T ss_pred ccCcC--CCccccccccc-eehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---CceEEEeehhhHHHHH
Confidence 44444 99999988886 88888866 599998888888889999999999999999875 699999999843222
Q ss_pred --HHHHHHHHHHcC--CceeeecCCHHHHHHHHHHcCceeeeecc-CCCcceeecceeEEEEcCCCeEEEEecCC----C
Q 042757 183 --PAHLRAYLKEFN--SRIVGLTGPVGAIRQMAQEYRVFFKKVEE-EGDDYLVESSHNMYLMNPSLEVVRCFGVE----Y 253 (271)
Q Consensus 183 --~~~l~~~~~~~~--~~~~~l~~~~~~~~~~~~~~gv~~~~~~~-~~~~y~v~~~p~~~lID~~G~iv~~~~~~----~ 253 (271)
.+.+++|.+..+ .+|+.+.++ .++++-.|+..-..... .+.. -....+|+|||+-+|+..+-++ -
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~---~rela~~l~MlD~~e~~~~~~~---~T~Ravfvi~pdkKirLs~lYP~ttGR 155 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADP---NRELAFLLNMLDPEEKKNIGDG---KTVRAVFVIDPDKKIRLSFLYPSTTGR 155 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCC---chhhhhhhcccCHhHcCCCCCC---ceEEEEEEECCCceEEEEEEcccccCc
Confidence 222344444444 345555433 35566677764322111 1111 1357889999999999886443 3
Q ss_pred CHHHHHHHHHHH
Q 042757 254 TAEELAEEISKE 265 (271)
Q Consensus 254 ~~~~l~~~i~~l 265 (271)
+.+++...|..|
T Consensus 156 N~dEiLRvidsL 167 (224)
T KOG0854|consen 156 NFDEILRVIDSL 167 (224)
T ss_pred CHHHHHHHHHHH
Confidence 445555555443
No 98
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=6e-08 Score=73.76 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+|.++|+|.++||++ |+..-|.+.++..+|. ++.++-|.+|. +..
T Consensus 20 ~~kliVvdF~a~wCgP-Ck~i~P~~~~La~~y~-----~v~Flkvdvde----------------------------~~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGP-CKAIAPKFEKLAEKYP-----DVVFLKVDVDE----------------------------LEE 65 (106)
T ss_pred CCCeEEEEEECCCCcc-hhhhhhHHHHHHHHCC-----CCEEEEEeccc----------------------------CHh
Confidence 3699999999999998 9999999999999887 46676676662 244
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
++++|+|. ..|++.++ ++|+.+..+-+. +.+++.+.|.+
T Consensus 66 ~~~~~~V~--------------~~PTf~f~-k~g~~~~~~vGa-~~~~l~~~i~~ 104 (106)
T KOG0907|consen 66 VAKEFNVK--------------AMPTFVFY-KGGEEVDEVVGA-NKAELEKKIAK 104 (106)
T ss_pred HHHhcCce--------------EeeEEEEE-ECCEEEEEEecC-CHHHHHHHHHh
Confidence 66677664 35666666 788888777442 34455555543
No 99
>PTZ00051 thioredoxin; Provisional
Probab=98.77 E-value=7.5e-08 Score=71.54 Aligned_cols=79 Identities=14% Similarity=0.089 Sum_probs=56.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||++ |....+.+.++.+.+. ++.++.|..|. ...
T Consensus 17 ~~~~vli~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~~~~~vd~~~----------------------------~~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGP-CKRIAPFYEECSKEYT-----KMVFVKVDVDE----------------------------LSE 62 (98)
T ss_pred cCCeEEEEEECCCCHH-HHHHhHHHHHHHHHcC-----CcEEEEEECcc----------------------------hHH
Confidence 4789999999999997 9999999999988653 45555555431 134
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEEL 258 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l 258 (271)
++++|++. ..|+++ +.++|+++..+.|. +.+++
T Consensus 63 ~~~~~~v~--------------~~Pt~~-~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 63 VAEKENIT--------------SMPTFK-VFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred HHHHCCCc--------------eeeEEE-EEeCCeEEEEEeCC-CHHHh
Confidence 56677664 367654 45799999888663 55554
No 100
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.75 E-value=4.3e-08 Score=95.43 Aligned_cols=95 Identities=9% Similarity=0.052 Sum_probs=65.8
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCC
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGP 203 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~ 203 (271)
+..+||+++|+||++||++ |+...+.. .++.++++ ++.++-|.+|. ++
T Consensus 470 a~~~gK~VlVdF~A~WC~~-Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~--~~--------------------- 520 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQQALA-----DTVLLQADVTA--NN--------------------- 520 (571)
T ss_pred HHhcCCcEEEEEECCcCHh-HHHHHHHhcCCHHHHHHhc-----CCEEEEEECCC--CC---------------------
Confidence 3346899999999999997 99866653 45555553 45555555442 11
Q ss_pred HHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEE--EEecCCCCHHHHHHHHHHH
Q 042757 204 VGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVV--RCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 204 ~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv--~~~~~~~~~~~l~~~i~~l 265 (271)
++..+++++|++. ..|+++++|++|+++ .++.+..+.+++.+.|+++
T Consensus 521 -~~~~~l~~~~~v~--------------g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 521 -AEDVALLKHYNVL--------------GLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred -hhhHHHHHHcCCC--------------CCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 1224566677653 478999999999985 5667778888888777764
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.73 E-value=2.6e-08 Score=73.40 Aligned_cols=87 Identities=17% Similarity=0.041 Sum_probs=64.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||.+||+. |....+.+.++.+.+... .++.++-|+.|. ...
T Consensus 14 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~----------------------------~~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGH-CKALAPEYEKLAKELKGD--GKVVVAKVDCTA----------------------------NND 62 (101)
T ss_pred CCCcEEEEEECCCCHH-HHhhhHHHHHHHHHhccC--CceEEEEeeccc----------------------------hHH
Confidence 4569999999999997 999999999999888521 357666665542 123
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEE 261 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~ 261 (271)
+++.|++ ...|++++++++|+.+..+.+..+.+++.+.
T Consensus 63 ~~~~~~i--------------~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~~~ 100 (101)
T cd02961 63 LCSEYGV--------------RGYPTIKLFPNGSKEPVKYEGPRTLESLVEF 100 (101)
T ss_pred HHHhCCC--------------CCCCEEEEEcCCCcccccCCCCcCHHHHHhh
Confidence 5566655 3479999999888777778777777776543
No 102
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.72 E-value=1.7e-07 Score=72.88 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=67.2
Q ss_pred CCEEEEEEeeCCCCC-ChH--HHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 131 GNWVLLYFGYTSSPD-VGP--EQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 131 Gk~vll~F~at~Cp~-~C~--~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
..++|++||++||++ -|+ ...|.+.++..++-+. .++.++-|.+|.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--~~v~~~kVD~d~~---------------------------- 76 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--KGIGFGLVDSKKD---------------------------- 76 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--CCCEEEEEeCCCC----------------------------
Confidence 458999999999953 499 6667788888776332 2577777777632
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
..++++|||. ..|+++|+. +|+++. +.|..+.+.+.+.|++++
T Consensus 77 ~~La~~~~I~--------------~iPTl~lfk-~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 77 AKVAKKLGLD--------------EEDSIYVFK-DDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHHcCCc--------------cccEEEEEE-CCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 3467777764 468878884 999887 878888999999988876
No 103
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.71 E-value=1.6e-07 Score=70.24 Aligned_cols=85 Identities=15% Similarity=0.052 Sum_probs=61.6
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
+++++|+||++||++ |....+.+.++.+++. .++.++.+.+|.. ..+
T Consensus 18 ~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~----~~~~~~~id~~~~----------------------------~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGH-CKNLAPEWKKAAKALK----GIVKVGAVDADVH----------------------------QSL 64 (103)
T ss_pred CCcEEEEEECCCCHH-HHHHhHHHHHHHHHhc----CCceEEEEECcch----------------------------HHH
Confidence 567999999999997 9999999999998875 2466666655421 235
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
+++|++. ..|+++++++.......|.++.+.+++.+.+
T Consensus 65 ~~~~~i~--------------~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 65 AQQYGVR--------------GFPTIKVFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred HHHCCCC--------------ccCEEEEECCCCcceeecCCCCCHHHHHHHh
Confidence 5666553 4788899976545556677778888776543
No 104
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.69 E-value=3.3e-07 Score=69.75 Aligned_cols=81 Identities=12% Similarity=0.199 Sum_probs=64.4
Q ss_pred CeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC----CCCCHHHHHH
Q 042757 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP----QRDTPAHLRA 188 (271)
Q Consensus 113 ~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp----~~Dt~~~l~~ 188 (271)
+|++.|.+|+.++++.++||++||.-.||.|+. =. ....|++++++++++ +++|+++-.+. +.++.+.+++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~-t~-qy~~L~~L~~ky~~~---gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGY-TK-QYKQLNELYEKYKDK---GLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTT-HH-HHHHHHHHHHHHGGG---TEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCC-cc-ccHHHHHHHHHHhcC---CeEEEeeehHHhccccCCCHHHHHH
Confidence 689999999999999999999999999999985 55 899999999999975 58999988764 3345555555
Q ss_pred HHHH-cCCcee
Q 042757 189 YLKE-FNSRIV 198 (271)
Q Consensus 189 ~~~~-~~~~~~ 198 (271)
|+.. ++..|+
T Consensus 78 ~~~~~~~~~F~ 88 (108)
T PF00255_consen 78 FCKEKFGVTFP 88 (108)
T ss_dssp HHCHCHT-SSE
T ss_pred HHHhccCCccc
Confidence 5554 444443
No 105
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.67 E-value=3.8e-07 Score=70.15 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=62.0
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
++.++|+||++||++ |+...+.+.++.+.++ .+++..|.+|.. .++
T Consensus 22 ~~~vvv~f~a~wC~~-C~~~~~~l~~la~~~~-----~i~~~~vd~d~~----------------------------~~l 67 (113)
T cd02975 22 PVDLVVFSSKEGCQY-CEVTKQLLEELSELSD-----KLKLEIYDFDED----------------------------KEK 67 (113)
T ss_pred CeEEEEEeCCCCCCC-hHHHHHHHHHHHHhcC-----ceEEEEEeCCcC----------------------------HHH
Confidence 556889999999997 9999999999987642 577777776621 234
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCC---CeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPS---LEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~---G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
+++|++ .+.|++++.+.. |.+ ++.+..+.+++.+.|..+++
T Consensus 68 ~~~~~v--------------~~vPt~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 68 AEKYGV--------------ERVPTTIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred HHHcCC--------------CcCCEEEEEeCCeecceE--EEEecCchHHHHHHHHHHHh
Confidence 555654 457888888753 333 35456777888888888775
No 106
>PTZ00102 disulphide isomerase; Provisional
Probab=98.66 E-value=9.6e-08 Score=90.85 Aligned_cols=107 Identities=10% Similarity=-0.043 Sum_probs=77.7
Q ss_pred EEcCCCCeeecC-cCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 116 LIDTENRLVTEN-NFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 116 l~d~~G~~v~l~-~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
+....|+.+... .-.||++||+||++||++ |....|.+.++.+.+.+. ..+.++.|..|.+.
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~-C~~~~p~~~~~a~~~~~~--~~v~~~~id~~~~~-------------- 421 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGH-CKNLEPVYNELGEKYKDN--DSIIVAKMNGTANE-------------- 421 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHhccC--CcEEEEEEECCCCc--------------
Confidence 555566655533 235899999999999997 999999999999888653 25666666554210
Q ss_pred CceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 195 SRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 195 ~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
..++.| .+...|+++++++++++...|.|..+.+.+.+.|++.+.
T Consensus 422 --------------~~~~~~--------------~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 422 --------------TPLEEF--------------SWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred --------------cchhcC--------------CCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 012233 344579999999988877778888999999888887765
No 107
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.66 E-value=3.5e-07 Score=71.58 Aligned_cols=100 Identities=12% Similarity=0.106 Sum_probs=56.9
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
-.||++||+|+++||++ |...-... .++.+.+.+ ++ +.|.+|-+. .++..+.|.+.
T Consensus 13 ~~~KpVll~f~a~WC~~-Ck~me~~~f~~~~V~~~l~~----~f--v~VkvD~~~-~~~~~~~~~~~------------- 71 (124)
T cd02955 13 REDKPIFLSIGYSTCHW-CHVMEHESFEDEEVAAILNE----NF--VPIKVDREE-RPDVDKIYMNA------------- 71 (124)
T ss_pred HcCCeEEEEEccCCCHh-HHHHHHHccCCHHHHHHHhC----CE--EEEEEeCCc-CcHHHHHHHHH-------------
Confidence 36899999999999997 98655421 244444432 34 455555422 33332223211
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC-----CCCHHHHHHHHHHHhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV-----EYTAEELAEEISKEMK 267 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~-----~~~~~~l~~~i~~lL~ 267 (271)
+...|| +...|+++++|++|+++...++ +.+...+.+.++.+..
T Consensus 72 ----~~~~~~--------------~~G~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (124)
T cd02955 72 ----AQAMTG--------------QGGWPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE 120 (124)
T ss_pred ----HHHhcC--------------CCCCCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence 111223 3347999999999999987533 1333344444444433
No 108
>PTZ00102 disulphide isomerase; Provisional
Probab=98.63 E-value=5.5e-07 Score=85.66 Aligned_cols=106 Identities=19% Similarity=0.104 Sum_probs=73.2
Q ss_pred EEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 116 LIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 116 l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
+.+.+.+.++..--+++.++|+||++||++ |....|.+.++...+.+.. .++.+.-|.++..
T Consensus 34 v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~-Ck~~~p~~~~~a~~~~~~~-~~i~~~~vd~~~~---------------- 95 (477)
T PTZ00102 34 VTVLTDSTFDKFITENEIVLVKFYAPWCGH-CKRLAPEYKKAAKMLKEKK-SEIVLASVDATEE---------------- 95 (477)
T ss_pred cEEcchhhHHHHHhcCCcEEEEEECCCCHH-HHHhhHHHHHHHHHHHhcC-CcEEEEEEECCCC----------------
Confidence 334444433322235789999999999997 9999999999988886543 2465555544311
Q ss_pred ceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 196 RIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 196 ~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
..++++|++. ..|++++++..+ .+ .|.+..+.+.+.+.|.+++.
T Consensus 96 ------------~~l~~~~~i~--------------~~Pt~~~~~~g~-~~-~y~g~~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 96 ------------MELAQEFGVR--------------GYPTIKFFNKGN-PV-NYSGGRTADGIVSWIKKLTG 139 (477)
T ss_pred ------------HHHHHhcCCC--------------cccEEEEEECCc-eE-EecCCCCHHHHHHHHHHhhC
Confidence 3466677653 368888998655 44 77778899999988887764
No 109
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.60 E-value=6e-07 Score=68.61 Aligned_cols=82 Identities=10% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCCEEEEEEeeCC--CCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 130 LGNWVLLYFGYTS--SPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 130 ~Gk~vll~F~at~--Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
.|.+++|.||++| ||+ |....|.|.++.+++. ..+.++-|.+|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~-c~~i~P~leela~e~~----~~v~f~kVdid~~---------------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPE-VLDVAVVLPELLKAFP----GRFRAAVVGRADE---------------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcc-hhhhHhHHHHHHHHCC----CcEEEEEEECCCC----------------------------
Confidence 5778999999997 998 9999999999999886 2577767776631
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHH
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELA 259 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~ 259 (271)
.+++.+|+|. ..|+++++ ++|+++..+.|..+-+++.
T Consensus 73 ~~la~~f~V~--------------sIPTli~f-kdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 73 QALAARFGVL--------------RTPALLFF-RDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHHcCCC--------------cCCEEEEE-ECCEEEEEEeCccCHHHHh
Confidence 2466677654 46776666 4899999987777766654
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.60 E-value=9.4e-07 Score=67.64 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=36.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.+|+++|.|+++||++ |...-|.|.++.+++.+ .+.++-|.+|
T Consensus 13 ~~klVVVdF~a~WC~p-Ck~mdp~l~ela~~~~~----~~~f~kVDVD 55 (114)
T cd02986 13 AEKVLVLRFGRDEDAV-CLQLDDILSKTSHDLSK----MASIYLVDVD 55 (114)
T ss_pred CCCEEEEEEeCCCChh-HHHHHHHHHHHHHHccC----ceEEEEEecc
Confidence 5899999999999998 99999999999998852 2666666665
No 111
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.57 E-value=1.2e-06 Score=62.70 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=55.6
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHH
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQE 213 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (271)
.+..||++||++ |+...+.+.++.++++ .++.++-|.+|. . .+.+++
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~----~~~~~~~vd~~~---~-------------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPY-CPAAKRVVEEVAKEMG----DAVEVEYINVME---N-------------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcc-hHHHHHHHHHHHHHhc----CceEEEEEeCcc---C-------------------------HHHHHH
Confidence 466799999997 9999999999998875 246666666542 1 123344
Q ss_pred cCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 214 YRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 214 ~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
||+ ...|++++ +|+. .+.+..+.+++.+.|+++|
T Consensus 49 ~~v--------------~~vPt~~~---~g~~--~~~G~~~~~~l~~~l~~~~ 82 (82)
T TIGR00411 49 YGI--------------MAVPAIVI---NGDV--EFIGAPTKEELVEAIKKRL 82 (82)
T ss_pred cCC--------------ccCCEEEE---CCEE--EEecCCCHHHHHHHHHhhC
Confidence 554 34677665 6664 4556678888888877654
No 112
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.56 E-value=1.1e-06 Score=63.16 Aligned_cols=83 Identities=18% Similarity=0.122 Sum_probs=59.8
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
+++++|+||++||+. |....+.++++.+. . .++.++.|+++.. ..+
T Consensus 10 ~~~~ll~~~~~~C~~-C~~~~~~~~~~~~~-~----~~~~~~~i~~~~~----------------------------~~~ 55 (93)
T cd02947 10 AKPVVVDFWAPWCGP-CKAIAPVLEELAEE-Y----PKVKFVKVDVDEN----------------------------PEL 55 (93)
T ss_pred CCcEEEEEECCCChh-HHHhhHHHHHHHHH-C----CCceEEEEECCCC----------------------------hhH
Confidence 388999999999997 99999999999876 1 3677777776531 234
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
++.|++ ...|++++++ +|+++..+.+..+.+.+.+.|
T Consensus 56 ~~~~~v--------------~~~P~~~~~~-~g~~~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 56 AEEYGV--------------RSIPTFLFFK-NGKEVDRVVGADPKEELEEFL 92 (93)
T ss_pred HHhcCc--------------ccccEEEEEE-CCEEEEEEecCCCHHHHHHHh
Confidence 455554 3467777774 778888887766666666554
No 113
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.55 E-value=4e-07 Score=70.13 Aligned_cols=44 Identities=11% Similarity=-0.142 Sum_probs=35.3
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
+++++|+||++||++ |....+.++++.+.+++.. ..+.+..|.+
T Consensus 19 ~~~vvV~f~a~wC~~-C~~~~~~~~~la~~~~~~~-~~v~~~~vd~ 62 (114)
T cd02992 19 PSAWLVEFYASWCGH-CRAFAPTWKKLARDLRKWR-PVVRVAAVDC 62 (114)
T ss_pred CCeEEEEEECCCCHH-HHHHhHHHHHHHHHHHhcC-CceEEEEEec
Confidence 479999999999997 9999999999999887542 2466655554
No 114
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.54 E-value=4.1e-07 Score=67.96 Aligned_cols=45 Identities=9% Similarity=-0.030 Sum_probs=36.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.+++++|+||++||++ |....+.+.++.+.+... .++.+.-|..|
T Consensus 17 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGH-CKALAPIYEELAEKLKGD--DNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHH-HHHHhhHHHHHHHHhcCC--CCEEEEEEeCc
Confidence 3689999999999997 999999999999988642 24666555544
No 115
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.52 E-value=8.7e-07 Score=75.91 Aligned_cols=135 Identities=19% Similarity=0.269 Sum_probs=86.6
Q ss_pred CCCCCcCCCeEEEcCCCCe-eecCcC-C-CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC-
Q 042757 105 VTGPIIGGPFTLIDTENRL-VTENNF-L-GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR- 180 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~~G~~-v~l~~~-~-Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~- 180 (271)
+|.++ ||+.+.+.+|+. .++-|+ + ++|++|||+...||+ =...+..++++.+++.+. +.++.|-+....
T Consensus 75 ~G~~A--Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPp-F~~~l~~f~~l~~~f~d~----adFl~VYI~EAHp 147 (237)
T PF00837_consen 75 LGGPA--PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPP-FMAKLDAFKRLVEDFSDV----ADFLIVYIEEAHP 147 (237)
T ss_pred CCCCC--CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchH-HHHHHHHHHHHHHHhhhh----hheehhhHhhhCc
Confidence 66766 999999999998 899998 3 689999999888886 777788888888888743 445555443210
Q ss_pred -C---------------C-HHHH--HHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcC
Q 042757 181 -D---------------T-PAHL--RAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNP 241 (271)
Q Consensus 181 -D---------------t-~~~l--~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~ 241 (271)
| + .+.+ .+-+.+..+..+.+.++.+ ....++||.. .-.+|||.
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~md--N~~~~~YgA~---------------PeRlyIi~- 209 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTMD--NNFNKAYGAL---------------PERLYIIQ- 209 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEccC--CHHHHHhCCC---------------cceEEEEE-
Confidence 0 1 1111 1122222344444444433 2334455543 33568996
Q ss_pred CCeEEEEecC---CCCHHHHHHHHHH
Q 042757 242 SLEVVRCFGV---EYTAEELAEEISK 264 (271)
Q Consensus 242 ~G~iv~~~~~---~~~~~~l~~~i~~ 264 (271)
+|+|++.-+. .++++++.+.|++
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 9999988642 4677887777764
No 116
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.49 E-value=2.6e-06 Score=65.37 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=65.3
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHH-H--HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQM-M--AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~-l--~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
-++|+++|+|.+.||++ |...... + .++.+.+.+ + +|++.+|-. ++
T Consensus 15 ~~~K~llv~~~~~~c~~-c~~~~~~vl~~~~v~~~l~~----~--~v~~~~d~~--~~---------------------- 63 (114)
T cd02958 15 SEKKWLLVYLQSEDEFD-SQVLNRDLWSNESVKEFIRE----N--FIFWQCDID--SS---------------------- 63 (114)
T ss_pred hhCceEEEEEecCCcch-HHHHHHHHcCCHHHHHHHHh----C--EEEEEecCC--Cc----------------------
Confidence 35899999999999986 9775432 2 233333332 2 344555432 11
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcC-CCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNP-SLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~-~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
+..+++..|++. ..|.+++||+ +|+++..+.|..+++++...|++.+..
T Consensus 64 e~~~~~~~~~~~--------------~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 64 EGQRFLQSYKVD--------------KYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred cHHHHHHHhCcc--------------CCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 123455566542 4789999999 899999999999999999999887654
No 117
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.47 E-value=4.5e-06 Score=64.16 Aligned_cols=71 Identities=8% Similarity=-0.084 Sum_probs=51.8
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+++++|+||++||++ |....|.|.++.+++. ++.++-|.+|.. ..
T Consensus 21 ~~~~vvV~f~a~~c~~-C~~~~p~l~~la~~~~-----~i~f~~Vd~~~~----------------------------~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFR-CKIMDKHLEILAKKHL-----ETKFIKVNAEKA----------------------------PF 66 (113)
T ss_pred CCCcEEEEEECCCCcc-HHHHHHHHHHHHHHcC-----CCEEEEEEcccC----------------------------HH
Confidence 3579999999999997 9999999999998764 455555554421 23
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
++++|++. ..|++.++. +|+.+.++
T Consensus 67 l~~~~~v~--------------~vPt~l~fk-~G~~v~~~ 91 (113)
T cd02989 67 LVEKLNIK--------------VLPTVILFK-NGKTVDRI 91 (113)
T ss_pred HHHHCCCc--------------cCCEEEEEE-CCEEEEEE
Confidence 56666654 467766664 88988775
No 118
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.46 E-value=1.6e-06 Score=75.79 Aligned_cols=106 Identities=17% Similarity=0.155 Sum_probs=78.3
Q ss_pred cCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 126 ENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 126 l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
+.++.+++-|++|+-+.||. |....|.|+.+.++++ +.++.||+|.... +.++....+
T Consensus 145 i~~la~~~gL~fFy~~~C~~-C~~~apil~~fa~~yg------i~v~~VS~DG~~~-------------p~fp~~~~d-- 202 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPI-SQKMAPVIQAFAKEYG------ISVIPISVDGTLI-------------PGLPNSRSD-- 202 (256)
T ss_pred HHHHHhceeEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCccCC--
Confidence 45567889999999999995 9999999999999875 8899999996421 122221112
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEE-EecCCCCHHHHHHHHHHHhhhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVR-CFGVEYTAEELAEEISKEMKKA 269 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~-~~~~~~~~~~l~~~i~~lL~~~ 269 (271)
...++.+|+ .++|++|||+++.+... .-.|.++.++|.+.|..++...
T Consensus 203 --~gqa~~l~v--------------~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f 251 (256)
T TIGR02739 203 --SGQAQHLGV--------------KYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQF 251 (256)
T ss_pred --hHHHHhcCC--------------ccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 223555555 35899999999955444 4457899999999998887754
No 119
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.40 E-value=2.5e-06 Score=73.05 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=71.7
Q ss_pred cCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 126 ENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 126 l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
+.++.+++-|++|+.+.||. |..+.|.|+.+.++++ +.++.||+|.... +.++....+
T Consensus 115 l~~la~~~gL~~F~~~~C~~-C~~~~pil~~~~~~yg------~~v~~vs~DG~~~-------------~~fp~~~~~-- 172 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPY-CQQQAPILQQFADKYG------FSVIPVSLDGRPI-------------PSFPNPRPD-- 172 (215)
T ss_pred HHHHhhCeEEEEEEcCCCch-hHHHHHHHHHHHHHhC------CEEEEEecCCCCC-------------cCCCCCCCC--
Confidence 45667899999999999995 9999999999999875 8899999995321 111111112
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEE-ecCCCCHHHHHHHH
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRC-FGVEYTAEELAEEI 262 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~-~~~~~~~~~l~~~i 262 (271)
..+++.||| ..+|++|||++++..... -.|.++.++|.+.|
T Consensus 173 --~g~~~~l~v--------------~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 173 --PGQAKRLGV--------------KVTPALFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred --HHHHHHcCC--------------CcCCEEEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 234556665 358999999999844444 35678888887654
No 120
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.38 E-value=4.8e-06 Score=63.83 Aligned_cols=40 Identities=10% Similarity=0.010 Sum_probs=32.6
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
+++++|+||++||++ |....|.++++.+++. ++.++-|.+
T Consensus 24 ~~~vvv~F~a~~c~~-C~~l~~~l~~la~~~~-----~v~f~~vd~ 63 (113)
T cd02957 24 GTRVVVHFYEPGFPR-CKILDSHLEELAAKYP-----ETKFVKINA 63 (113)
T ss_pred CCEEEEEEeCCCCCc-HHHHHHHHHHHHHHCC-----CcEEEEEEc
Confidence 589999999999997 9999999999998874 355544443
No 121
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.37 E-value=2.8e-06 Score=80.13 Aligned_cols=93 Identities=19% Similarity=0.137 Sum_probs=68.7
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
++++++|+||++||++ |....|.+.++.+.+...+ .++.++.|.+|.. .+
T Consensus 17 ~~~~~~v~f~a~wC~~-c~~~~~~~~~~a~~~~~~~-~~v~~~~vd~~~~----------------------------~~ 66 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGH-CKSLAPEYEKAADELKKKG-PPIKLAKVDATEE----------------------------KD 66 (462)
T ss_pred cCCCEEEEEECCCCHH-HHhhhHHHHHHHHHHhhcC-CceEEEEEECCCc----------------------------HH
Confidence 5788999999999997 9999999999999887543 3566666655421 34
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeE-EEEecCCCCHHHHHHHHHHHhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEV-VRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~i-v~~~~~~~~~~~l~~~i~~lL~ 267 (271)
+++.|++. ..|+++++ ++|+. +..|.+..+.+.+.+.|.+.+.
T Consensus 67 l~~~~~i~--------------~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 67 LAQKYGVS--------------GYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSG 110 (462)
T ss_pred HHHhCCCc--------------cccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcC
Confidence 66677654 36766666 47776 6778778888888888877654
No 122
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.37 E-value=1e-06 Score=68.32 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=38.0
Q ss_pred CCCEEEEEEee-------CCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 130 LGNWVLLYFGY-------TSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 130 ~Gk~vll~F~a-------t~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
+|++++|+||| +||++ |....|.+.++.+++. .++.++-|.+|.
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~~----~~v~fv~Vdvd~ 70 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAAP----EDCVFIYCDVGD 70 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHCC----CCCEEEEEEcCC
Confidence 58999999999 99998 9999999999998876 257778888764
No 123
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.36 E-value=3.5e-06 Score=73.36 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=77.0
Q ss_pred cCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 126 ENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 126 l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
+.++.++|-|++|+-+.||. |....|.|+.+.++++ +.++.||+|.... +.|+....+..
T Consensus 138 i~~la~~~GL~fFy~s~Cp~-C~~~aPil~~fa~~yg------~~v~~VS~DG~~~-------------p~fp~~~~d~g 197 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPI-DGQLAQVINDFRDTYG------LSVIPVSVDGVIN-------------PLLPDSRTDQG 197 (248)
T ss_pred HHHHHhcceEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCCccChh
Confidence 45567889999999999996 9999999999999875 8899999996321 12221122211
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCC-eEEEEecCCCCHHHHHHHHHHHhhhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSL-EVVRCFGVEYTAEELAEEISKEMKKA 269 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G-~iv~~~~~~~~~~~l~~~i~~lL~~~ 269 (271)
.++.+| |.++|++||||++. ++.-.--|.++.++|.+.|...+...
T Consensus 198 ----qa~~l~--------------v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~ 244 (248)
T PRK13703 198 ----QAQRLG--------------VKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDF 244 (248)
T ss_pred ----HHHhcC--------------CcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhcc
Confidence 223444 44689999999996 55444457789999999888776653
No 124
>PTZ00062 glutaredoxin; Provisional
Probab=98.23 E-value=8.8e-06 Score=69.00 Aligned_cols=77 Identities=6% Similarity=0.054 Sum_probs=55.2
Q ss_pred CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHH
Q 042757 132 NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMA 211 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (271)
..++++||++|||+ |....+.|.++.+++. .+.+ +.+|. |
T Consensus 18 g~~vl~f~a~w~~~-C~~m~~vl~~l~~~~~-----~~~F--~~V~~--d------------------------------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPE-YEQLMDVCNALVEDFP-----SLEF--YVVNL--A------------------------------ 57 (204)
T ss_pred CcEEEEEeCCCCcc-hHHHHHHHHHHHHHCC-----CcEE--EEEcc--c------------------------------
Confidence 45899999999998 9999999999999875 3554 44431 0
Q ss_pred HHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 212 QEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 212 ~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
|.|...|+++++ .+|+++.++.+ .++.++...|+.+.
T Consensus 58 ----------------~~V~~vPtfv~~-~~g~~i~r~~G-~~~~~~~~~~~~~~ 94 (204)
T PTZ00062 58 ----------------DANNEYGVFEFY-QNSQLINSLEG-CNTSTLVSFIRGWA 94 (204)
T ss_pred ----------------cCcccceEEEEE-ECCEEEeeeeC-CCHHHHHHHHHHHc
Confidence 334557877777 59999998854 34666666665543
No 125
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.23 E-value=6.8e-06 Score=77.71 Aligned_cols=92 Identities=9% Similarity=-0.052 Sum_probs=63.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+++++||+||++||++ |....|.+.++.+++... ++.++.|.+|-+ .. ..
T Consensus 370 ~~k~VLV~FyApWC~~-Ck~m~P~~eelA~~~~~~---~v~~~kVdvD~~--~~------------------------~~ 419 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPF-CQAMEASYLELAEKLAGS---GVKVAKFRADGD--QK------------------------EF 419 (463)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC---CcEEEEEECCCC--cc------------------------HH
Confidence 6889999999999997 999999999999988642 477777777631 10 01
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec-CCCCHHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG-VEYTAEELAEEISKE 265 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~-~~~~~~~l~~~i~~l 265 (271)
..+.|+| ...|+++++.....-...|. +.-+.+.|..-|+.+
T Consensus 420 ~~~~~~I--------------~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 420 AKQELQL--------------GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred HHHHcCC--------------CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 1234443 35788888865543334464 567888777666543
No 126
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.22 E-value=1.6e-05 Score=56.54 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=23.9
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHh
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILD 162 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~ 162 (271)
|.||++|||+ |....+.+.++.++++
T Consensus 3 i~~~a~~C~~-C~~~~~~~~~~~~e~~ 28 (76)
T TIGR00412 3 IQIYGTGCAN-CQMTEKNVKKAVEELG 28 (76)
T ss_pred EEEECCCCcC-HHHHHHHHHHHHHHcC
Confidence 7799999997 9999999999999876
No 127
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.22 E-value=8.4e-06 Score=60.87 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=60.6
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
|+++++.|+++||++ |....+.+.++.++++ .++.++.|..|. ...+
T Consensus 12 ~~~~~~~f~~~~~~~-~~~~~~~~~~vA~~~~----~~v~f~~vd~~~----------------------------~~~~ 58 (103)
T cd02982 12 GKPLLVLFYNKDDSE-SEELRERFKEVAKKFK----GKLLFVVVDADD----------------------------FGRH 58 (103)
T ss_pred CCCEEEEEEcCChhh-HHHHHHHHHHHHHHhC----CeEEEEEEchHh----------------------------hHHH
Confidence 789999999999987 9999999999999997 256666655431 1235
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCC-CeEEEEecCCCCHHHHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPS-LEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~-G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
+..||+... ..|++.+++.. |+......+..+.+.+.+-|+..
T Consensus 59 ~~~~~i~~~------------~~P~~~~~~~~~~~k~~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 59 LEYFGLKEE------------DLPVIAIINLSDGKKYLMPEEELTAESLEEFVEDF 102 (103)
T ss_pred HHHcCCChh------------hCCEEEEEecccccccCCCccccCHHHHHHHHHhh
Confidence 566665310 36777777763 54433333445777776666543
No 128
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.15 E-value=2.4e-05 Score=64.89 Aligned_cols=41 Identities=5% Similarity=-0.127 Sum_probs=33.3
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+++++|+||++||++ |....|.|.++...+. .+.++-|.+|
T Consensus 83 ~~~VVV~Fya~wc~~-Ck~m~~~l~~LA~~~~-----~vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPG-CAALNSSLLCLAAEYP-----AVKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CeEEEEEecc
Confidence 459999999999997 9999999999998774 4666555543
No 129
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.12 E-value=3.8e-05 Score=65.72 Aligned_cols=92 Identities=12% Similarity=0.064 Sum_probs=64.1
Q ss_pred CCCCEEEEEEee---CCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 129 FLGNWVLLYFGY---TSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 129 ~~Gk~vll~F~a---t~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
+++...++.|.+ +||++ |....|.+.++.+++. ++.+..+.+|-..
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~-C~~~~p~l~~la~~~~-----~~~i~~v~vd~~~------------------------- 65 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQY-CKETEQLLEELSEVSP-----KLKLEIYDFDTPE------------------------- 65 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCc-hHHHHHHHHHHHhhCC-----CceEEEEecCCcc-------------------------
Confidence 455555666766 99997 9999999999988773 4556667766311
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEE-EEecCCCCHHHHHHHHHHHhh
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVV-RCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv-~~~~~~~~~~~l~~~i~~lL~ 267 (271)
..++++.|+|. ..|++.+++ +|+.+ .++.+..+.+++.+.|+.+++
T Consensus 66 -~~~l~~~~~V~--------------~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 66 -DKEEAEKYGVE--------------RVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred -cHHHHHHcCCC--------------ccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 13456666654 467777776 67776 477667777888888887764
No 130
>PLN02309 5'-adenylylsulfate reductase
Probab=98.11 E-value=2.5e-05 Score=73.86 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=63.2
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.+|++||+||++||++ |....|.+.++.+++.. .+|.++-|.+|.. . ..
T Consensus 364 ~~k~vlV~FyApWC~~-Cq~m~p~~e~LA~~~~~---~~V~f~kVD~d~~--~-------------------------~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPF-CQAMEASYEELAEKLAG---SGVKVAKFRADGD--Q-------------------------KE 412 (457)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhcc---CCeEEEEEECCCc--c-------------------------hH
Confidence 5889999999999997 99999999999998863 2577766666511 0 12
Q ss_pred HHH-HcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec-CCCCHHHHHHHHHHH
Q 042757 210 MAQ-EYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG-VEYTAEELAEEISKE 265 (271)
Q Consensus 210 ~~~-~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~-~~~~~~~l~~~i~~l 265 (271)
+++ .|+| .+.|+++++.+...-...|. +.-+.+.|.+.|+.+
T Consensus 413 la~~~~~I--------------~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 413 FAKQELQL--------------GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred HHHhhCCC--------------ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 332 3444 45788888865543334454 567888888777654
No 131
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.03 E-value=6.3e-05 Score=55.31 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=36.0
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.++++.+.+..|+..||++ |+...+.+.++...+. ++.+..+.+|
T Consensus 8 ~~l~~pv~i~~F~~~~C~~-C~~~~~~~~~l~~~~~-----~i~~~~vd~~ 52 (89)
T cd03026 8 RRLNGPINFETYVSLSCHN-CPDVVQALNLMAVLNP-----NIEHEMIDGA 52 (89)
T ss_pred HhcCCCEEEEEEECCCCCC-cHHHHHHHHHHHHHCC-----CceEEEEEhH
Confidence 4678888899999999997 9999999988887643 4666666654
No 132
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.02 E-value=5.4e-06 Score=65.31 Aligned_cols=80 Identities=14% Similarity=0.122 Sum_probs=46.3
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHH
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGA 206 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~ 206 (271)
+.+..+..++.|..+|||+ |...+|.|.++.+... ++.+=.|..|. .++
T Consensus 37 ~~~~~~~~ilvi~e~WCgD-~~~~vP~l~kiae~~p-----~i~~~~i~rd~---~~e---------------------- 85 (129)
T PF14595_consen 37 KSIQKPYNILVITETWCGD-CARNVPVLAKIAEANP-----NIEVRIILRDE---NKE---------------------- 85 (129)
T ss_dssp HT--S-EEEEEE--TT-HH-HHHHHHHHHHHHHH-T-----TEEEEEE-HHH---HHH----------------------
T ss_pred HhcCCCcEEEEEECCCchh-HHHHHHHHHHHHHhCC-----CCeEEEEEecC---Chh----------------------
Confidence 3455678899999999998 9999999999999753 35554455431 111
Q ss_pred HHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 207 IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 207 ~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
+..+|-- .+....|.++++|.+|+.+.+++.
T Consensus 86 ---l~~~~lt-----------~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 86 ---LMDQYLT-----------NGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp ---HTTTTTT------------SS--SSEEEEE-TT--EEEEEES
T ss_pred ---HHHHHHh-----------CCCeecCEEEEEcCCCCEeEEEcC
Confidence 2222210 123458999999999999999976
No 133
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.99 E-value=7e-05 Score=63.02 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=33.8
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
++++|+|+||++||++ |....+.|.++..++. .+.++-|.+
T Consensus 101 ~~~~VVV~Fya~wc~~-C~~m~~~l~~LA~k~~-----~vkFvkI~a 141 (192)
T cd02988 101 KDTWVVVHLYKDGIPL-CRLLNQHLSELARKFP-----DTKFVKIIS 141 (192)
T ss_pred CCCEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CCEEEEEEh
Confidence 3569999999999997 9999999999999875 466655554
No 134
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.97 E-value=0.00013 Score=63.84 Aligned_cols=136 Identities=10% Similarity=0.031 Sum_probs=82.4
Q ss_pred CCCcCCCeEEEcCCCCeeecCc-CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHH
Q 042757 107 GPIIGGPFTLIDTENRLVTENN-FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAH 185 (271)
Q Consensus 107 ~~~~~p~f~l~d~~G~~v~l~~-~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~ 185 (271)
.....|+|...+++|+.+++.+ ++||++||..+.+--...|...-- ....+++......++++|-|++-. ..
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~--~p~~~~~~~~~~~~~q~v~In~~e-----~~ 169 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWT--SPFLEDFLQEPYGRVQIVEINLIE-----NW 169 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHh--hHHHHHHhhCCCCceEEEEEecch-----HH
Confidence 3345699999999999988877 689998888776655432333221 234444544432379999998742 33
Q ss_pred HHHHHHHc-------------CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCC
Q 042757 186 LRAYLKEF-------------NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVE 252 (271)
Q Consensus 186 l~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~ 252 (271)
++.++-.. +..+....++ .....+-+++|+.- ..+..+||||++|+|+|.-.|.
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~-~~~~~iRe~Lgi~N------------~~~GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRG-QLSDDIREALGINN------------SYVGYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCC-cccHHHHHHhCCCC------------CCcCeEEEECCCCeEEeCccCC
Confidence 44444332 1122222221 00122334444431 2367789999999999999888
Q ss_pred CCHHHHHHHH
Q 042757 253 YTAEELAEEI 262 (271)
Q Consensus 253 ~~~~~l~~~i 262 (271)
.+++++....
T Consensus 237 At~~E~~~L~ 246 (252)
T PF05176_consen 237 ATPEELESLW 246 (252)
T ss_pred CCHHHHHHHH
Confidence 8888865543
No 135
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.94 E-value=5.8e-05 Score=71.19 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=64.8
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.++.+||+||++||++ |....|.+.++.+.+.... .++.++.|.+|.+ +
T Consensus 363 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~~-~~i~~~~id~~~n-~---------------------------- 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGH-CKNLAPIYEELAEKYKDAE-SDVVIAKMDATAN-D---------------------------- 411 (462)
T ss_pred CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhhcCC-CcEEEEEEECCCC-c----------------------------
Confidence 4789999999999997 9999999999999987521 2577766665421 0
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeE-EEEecCCCCHHHHHHHHHHHh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEV-VRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~i-v~~~~~~~~~~~l~~~i~~lL 266 (271)
+. . |.+...|++++.+..++. ...+.+..+.+.+.+.|.+..
T Consensus 412 ~~--------------~-~~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~ 454 (462)
T TIGR01130 412 VP--------------P-FEVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHA 454 (462)
T ss_pred cC--------------C-CCccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcC
Confidence 00 0 334457999999766653 345666778888777776654
No 136
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.91 E-value=0.0001 Score=63.05 Aligned_cols=84 Identities=24% Similarity=0.227 Sum_probs=52.0
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
+.+.++++.||++|||+ |+...+.++++..+. .++.+.-|..|. . .
T Consensus 131 ~~~pv~I~~F~a~~C~~-C~~~~~~l~~l~~~~-----~~i~~~~vD~~~---~-------------------------~ 176 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPY-CPYAVLMAHKFALAN-----DKILGEMIEANE---N-------------------------P 176 (215)
T ss_pred cCCCcEEEEEECCCCCC-cHHHHHHHHHHHHhc-----CceEEEEEeCCC---C-------------------------H
Confidence 44555677799999997 998888777776642 246555444331 1 2
Q ss_pred HHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 209 QMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 209 ~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
.++++|+|. +.|++++ +.+|+. +.+....+++.+.|.+
T Consensus 177 ~~~~~~~V~--------------~vPtl~i-~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 177 DLAEKYGVM--------------SVPKIVI-NKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhCCc--------------cCCEEEE-ecCCEE---EECCCCHHHHHHHHHh
Confidence 345566654 4666555 567753 5455666777666653
No 137
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.83 E-value=0.00014 Score=57.17 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=20.1
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMM 154 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l 154 (271)
.||++||+|++.||++ |...-...
T Consensus 22 ~~Kpvmv~f~sdwC~~-Ck~l~k~~ 45 (130)
T cd02960 22 SNKPLMVIHHLEDCPH-SQALKKAF 45 (130)
T ss_pred CCCeEEEEEeCCcCHh-HHHHHHHh
Confidence 6899999999999997 98765543
No 138
>PHA02125 thioredoxin-like protein
Probab=97.79 E-value=0.00032 Score=49.65 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=18.7
Q ss_pred EEEEeeCCCCCChHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l 157 (271)
+++|+++||++ |+...+.|.++
T Consensus 2 iv~f~a~wC~~-Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCAN-CKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHh-HHHHHHHHHHH
Confidence 68999999997 99988887643
No 139
>smart00594 UAS UAS domain.
Probab=97.75 E-value=0.0004 Score=53.96 Aligned_cols=89 Identities=21% Similarity=0.226 Sum_probs=57.9
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVG 205 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~ 205 (271)
-.+|.++|+|++.||++ |....... .++.+.+. .+ +|++.+|-. +++
T Consensus 25 ~~~K~~lv~~~~~~c~~-c~~~~r~vl~~~~V~~~i~----~~--fv~~~~dv~--~~e--------------------- 74 (122)
T smart00594 25 RQRRLLWLYLHSQDSPD-SQVFNRDVLCNEAVKSLIR----EN--FIFWQVDVD--TSE--------------------- 74 (122)
T ss_pred hhcCCEEEEEeCCCCch-HHHHHHHHccCHHHHHHHH----cC--EEEEEecCC--Chh---------------------
Confidence 35899999999999997 97755432 22333332 12 444444421 111
Q ss_pred HHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCC-----eEEEEecCCCCHHHHHHHH
Q 042757 206 AIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSL-----EVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 206 ~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G-----~iv~~~~~~~~~~~l~~~i 262 (271)
-.++++.|++. ..|.+.++|++| .++..+.|..+++++...|
T Consensus 75 -g~~l~~~~~~~--------------~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 75 -GQRVSQFYKLD--------------SFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred -HHHHHHhcCcC--------------CCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 13466666553 478999999998 5667778888898887655
No 140
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.67 E-value=0.00036 Score=59.61 Aligned_cols=120 Identities=13% Similarity=0.022 Sum_probs=78.5
Q ss_pred CCeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHH
Q 042757 112 GPFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLK 191 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~ 191 (271)
|.+++.+. --+.+.+|+++||.+--.+|.. |..++..|..|..+|.+++-.+|.++.|+- .......+...++
T Consensus 11 p~W~i~~~----~pm~~~~G~VtvVALL~asc~~-c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~--~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 11 PPWKIGGQ----DPMLNSLGHVTVVALLQASCYF-CLLQASRLEDLREKLENEGLSNISFMVVNH--QGEHSRLKYWELK 83 (238)
T ss_pred CCceECCc----hHhhhcCCcEEeeeehhhhhHH-HHHHHHHHHHHHHHHHHCCCCceEEEEEcC--CCcchhHHHHHHH
Confidence 77776443 3456789999999999999985 999999999999999998766888877773 2223333333444
Q ss_pred Hc-CCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCC
Q 042757 192 EF-NSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYT 254 (271)
Q Consensus 192 ~~-~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~ 254 (271)
+. ...++++..+..+ ..++..++- ..+ .+||+|+-|+++++..-+++
T Consensus 84 ~r~~~~ipVyqq~~~q-~dvW~~L~G-------~kd--------D~~iyDRCGrL~~~i~~P~S 131 (238)
T PF04592_consen 84 RRVSEHIPVYQQDENQ-PDVWELLNG-------SKD--------DFLIYDRCGRLTYHIPLPYS 131 (238)
T ss_pred HhCCCCCceecCCccc-cCHHHHhCC-------CcC--------cEEEEeccCcEEEEecCcHH
Confidence 43 3345554321110 122333321 112 34999999999999866544
No 141
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.63 E-value=0.00013 Score=53.93 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=38.8
Q ss_pred eecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 124 VTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 124 v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.....+.++++++.||++|||+ |...+|.+.++.+++.. .+.++.|.+.
T Consensus 25 ~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~i~~~ 73 (127)
T COG0526 25 LSLSELKGKPVLVDFWAPWCPP-CRAEAPLLEELAEEYGG----DVEVVAVNVD 73 (127)
T ss_pred eehhhcCCceEEEEEEcCcCHH-HHhhchhHHHHHHHhcC----CcEEEEEECC
Confidence 3444445899999999999997 99999999999998873 4666666653
No 142
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.63 E-value=0.00057 Score=46.85 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.5
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
-+..|+++|||. |+...+.|+++.+.. .++.+..|.+|
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~-----~~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPY-CPDAVQAANRIAALN-----PNISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHhC-----CceEEEEEEcc
Confidence 467899999997 999999988886542 25776666554
No 143
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00027 Score=60.80 Aligned_cols=91 Identities=13% Similarity=0.068 Sum_probs=60.4
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHH
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGA 206 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~ 206 (271)
+.-.||.++|.|.|+||.+ |....|.+..+..+|. +..++=|.||.-
T Consensus 17 s~ag~k~v~Vdfta~wCGP-Ck~IaP~Fs~lankYp-----~aVFlkVdVd~c--------------------------- 63 (288)
T KOG0908|consen 17 SAAGGKLVVVDFTASWCGP-CKRIAPIFSDLANKYP-----GAVFLKVDVDEC--------------------------- 63 (288)
T ss_pred hccCceEEEEEEEecccch-HHhhhhHHHHhhhhCc-----ccEEEEEeHHHh---------------------------
Confidence 3335799999999999998 9999999999999885 333444444432
Q ss_pred HHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 207 IRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 207 ~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
+..+..+|| ...|++ +.=.+|.-+..+.+ .++..|++.|++.+.
T Consensus 64 -~~taa~~gV--------------~amPTF-iff~ng~kid~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 64 -RGTAATNGV--------------NAMPTF-IFFRNGVKIDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred -hchhhhcCc--------------ccCceE-EEEecCeEeeeecC-CCHHHHHHHHHHHhc
Confidence 223344444 445654 44467766666643 456667777777664
No 144
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.31 E-value=0.00087 Score=48.12 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMM 154 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l 154 (271)
.||++||+|++.||+. |...-..+
T Consensus 16 ~~kpvlv~f~a~wC~~-C~~l~~~~ 39 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPP-CKKLEREV 39 (82)
T ss_dssp HTSEEEEEEETTTTHH-HHHHHHHT
T ss_pred cCCCEEEEEECCCCHh-HHHHHHHH
Confidence 5899999999999997 98766555
No 145
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.30 E-value=0.0012 Score=42.95 Aligned_cols=38 Identities=21% Similarity=0.095 Sum_probs=30.2
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
|+.||.+||+. |....+.+.++ . .. ..++.++.++++.
T Consensus 1 l~~~~~~~c~~-c~~~~~~~~~~-~-~~---~~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPF-CQALRPVLAEL-A-LL---NKGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChh-HHhhhhHHHHH-H-hh---CCCcEEEEEEcCC
Confidence 57899999986 99999999998 2 22 2478888888875
No 146
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.011 Score=47.29 Aligned_cols=130 Identities=15% Similarity=0.112 Sum_probs=85.3
Q ss_pred CCCCCcCCCeEEEcC------CCC-eeecCc-CCCCEEEEEEeeCCCCCChHH-HHHHHHHHHHHHhhccCCCeeEEEEE
Q 042757 105 VTGPIIGGPFTLIDT------ENR-LVTENN-FLGNWVLLYFGYTSSPDVGPE-QVQMMAKAIDILDSKKNLKILPIFVT 175 (271)
Q Consensus 105 ~~~~~~~p~f~l~d~------~G~-~v~l~~-~~Gk~vll~F~at~Cp~~C~~-el~~l~~l~~~l~~~~~~~v~~v~Is 175 (271)
+|... |..++... +|. .++..+ ++||-++|+--..--.|.|-. ++|...++++++.+++-+ .++.||
T Consensus 5 vg~kl--P~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD--~I~cVS 80 (165)
T COG0678 5 VGKKL--PAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVD--EIYCVS 80 (165)
T ss_pred cCCcC--CceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCc--eEEEEE
Confidence 44444 66555443 343 355555 588877775433333334766 899999999999987633 445666
Q ss_pred eCCCCCCHHHHHHHHHHcCCc--eeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 176 IDPQRDTPAHLRAYLKEFNSR--IVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 176 vDp~~Dt~~~l~~~~~~~~~~--~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
++ ++-.+.+|.+..+.+ +.++.+.. .++.+..|......+ ..+++.......||+ ||.|..-+
T Consensus 81 VN----D~FVm~AWak~~g~~~~I~fi~Dg~---geFTk~~Gm~~d~~~---~g~G~RS~RYsmvV~-nGvV~~~~ 145 (165)
T COG0678 81 VN----DAFVMNAWAKSQGGEGNIKFIPDGN---GEFTKAMGMLVDKSD---LGFGVRSWRYSMVVE-NGVVEKLF 145 (165)
T ss_pred eC----cHHHHHHHHHhcCCCccEEEecCCC---chhhhhcCceeeccc---CCcceeeeeEEEEEe-CCeEEEEE
Confidence 64 678999999998754 55554422 568888888766543 334556667777885 99887666
No 147
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=96.92 E-value=0.0021 Score=61.81 Aligned_cols=95 Identities=15% Similarity=0.088 Sum_probs=63.1
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHH-HHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMA-KAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~-~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
-++|+|+|+|+|.||-. |++--+..- +.+...+- .++ +.+-.|- |.+..++
T Consensus 472 ~~~~pVmlDfyAdWCvt-CK~~e~~tfsd~~v~~~~---~~~--vlLqaDv----------------------T~~~p~~ 523 (569)
T COG4232 472 AKAKPVMLDFYADWCVT-CKENEKYTFSDPQVQQAL---QDV--VLLQADV----------------------TANDPAI 523 (569)
T ss_pred CCCCcEEEeeehhHHHH-hHhhhhhccCcHHHHHhc---CCe--EEEEeee----------------------cCCCHHH
Confidence 35679999999999986 977554432 33333221 133 3444442 2233455
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHH
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
.++.++|++. ..|.+++.|++|+-.....+.++.+.+++.|++.
T Consensus 524 ~~lLk~~~~~--------------G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 524 TALLKRLGVF--------------GVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHcCCC--------------CCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 6777787765 3677899999998777777888888888888764
No 148
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.90 E-value=0.017 Score=44.59 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEE---cCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLM---NPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lI---D~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
.+++..+++. ..|.+.+| |.+..++.+..|..+++++...|+..+++
T Consensus 66 ~~la~~l~~~--------------~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 66 YRVSQALRER--------------TYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred HHHHHHhCCC--------------CCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 4566666653 36777888 77777888898999999999999988775
No 149
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.003 Score=59.96 Aligned_cols=90 Identities=14% Similarity=0.077 Sum_probs=64.9
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
-..+||-|+|+||.+ |....|.+.+..+.+.+.+ ..+.+. -||- + .+ ..+
T Consensus 42 ~~~vlVeFYAPWCgh-ck~LaPey~kAA~~Lke~~-s~i~La--kVDa---t---------------------~~--~~~ 91 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGH-CKALAPEYEKAATELKEEG-SPVKLA--KVDA---T---------------------EE--SDL 91 (493)
T ss_pred CceEEEEEEchhhhh-hhhhCcHHHHHHHHhhccC-CCceeE--Eeec---c---------------------hh--hhh
Confidence 357899999999998 9999999999999998764 244443 3331 1 11 456
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHH
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKE 265 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~l 265 (271)
+.+|+|.. .|+ ..|-++|+....|.++-..+.+...+++.
T Consensus 92 ~~~y~v~g--------------yPT-lkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 92 ASKYEVRG--------------YPT-LKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred HhhhcCCC--------------CCe-EEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 77776642 344 55668999877888888888888887754
No 150
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=96.86 E-value=0.024 Score=47.98 Aligned_cols=120 Identities=13% Similarity=0.169 Sum_probs=81.8
Q ss_pred CCeEEEcCCCCeeecCc-CCCCEEE--EEEe-----eCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 112 GPFTLIDTENRLVTENN-FLGNWVL--LYFG-----YTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~-~~Gk~vl--l~F~-----at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
.+..+...+|+ ++|.| |.|+-.| -.|- ...||. |-..+..++.....|... ++.++.||-. ..
T Consensus 47 ~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g-Cs~~~D~~~g~l~hL~~r---d~tfa~vSra----P~ 117 (211)
T PF05988_consen 47 KDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG-CSFWADHIDGALRHLHAR---DTTFAVVSRA----PL 117 (211)
T ss_pred CCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc-hhhhHhhhhhhHHHHHhC---CceEEEEeCC----CH
Confidence 56778888887 89988 5776533 3343 567986 999999997777777753 6899999954 57
Q ss_pred HHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecC
Q 042757 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~ 251 (271)
+.+.+|.++.|-.++.++.... .+-..|++.+... ++. +.-.+|+-|. |+|...|..
T Consensus 118 ~~i~afk~rmGW~~pw~Ss~gs---~Fn~D~~~~~~~~---~~~----~g~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 118 EKIEAFKRRMGWTFPWYSSYGS---DFNYDFGVSFDEG---GEM----PGLSVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHHHhcCCCceEEEcCCC---cccccccceeccC---CCc----eeEEEEEEcC-CEEEEEeec
Confidence 9999999999987777754321 2334555544321 111 2335677776 888887743
No 151
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.82 E-value=0.014 Score=39.86 Aligned_cols=32 Identities=6% Similarity=0.047 Sum_probs=22.6
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+..|+++|||. |....+.|.+ .++.+..+.+|
T Consensus 2 i~lf~~~~C~~-C~~~~~~l~~----------~~i~~~~vdi~ 33 (74)
T TIGR02196 2 VKVYTTPWCPP-CKKAKEYLTS----------KGIAFEEIDVE 33 (74)
T ss_pred EEEEcCCCChh-HHHHHHHHHH----------CCCeEEEEecc
Confidence 45699999997 9987766644 14666666665
No 152
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=0.0028 Score=60.55 Aligned_cols=92 Identities=11% Similarity=0.036 Sum_probs=60.4
Q ss_pred CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHH
Q 042757 132 NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMA 211 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (271)
+.-||-|+++||+. |+...|..+++.+.+.+-. .-|++..|.+.. +...+++
T Consensus 58 ~~~lVEFy~swCGh-Cr~FAPtfk~~A~dl~~W~-~vv~vaaVdCA~--------------------------~~N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGH-CRAFAPTFKKFAKDLEKWR-PVVRVAAVDCAD--------------------------EENVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhh-hhhcchHHHHHHHHHhccc-ceeEEEEeeccc--------------------------hhhhhhH
Confidence 45799999999998 9999999999999888654 234555555431 2235688
Q ss_pred HHcCceeeeeccCCCcceeecceeEEEEcCC------CeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 212 QEYRVFFKKVEEEGDDYLVESSHNMYLMNPS------LEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 212 ~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~------G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
++|+|.+ .|.+...-++ |.-+ .++..+.++.+.+.+.|.+
T Consensus 110 Ref~V~~--------------~Ptlryf~~~~~~~~~G~~~---~~~~~~~ei~~~l~~~la~ 155 (606)
T KOG1731|consen 110 REFSVSG--------------YPTLRYFPPDSQNKTDGSDV---SGPVIPSEIRDQLIRTLAE 155 (606)
T ss_pred hhcCCCC--------------CceeeecCCccccCcCCCcc---cCCcchhhHHHHHHHHHHH
Confidence 8888754 4444444444 4332 3445566666666655543
No 153
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.59 E-value=0.014 Score=54.33 Aligned_cols=90 Identities=17% Similarity=0.125 Sum_probs=62.1
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.++..+|.|+++||++ |....|...++...++. .+ ....+|. +....
T Consensus 46 ~~~~~~v~fyapwc~~-c~~l~~~~~~~~~~l~~----~~--~~~~vd~--------------------------~~~~~ 92 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGH-CKKLAPTYKKLAKALKG----KV--KIGAVDC--------------------------DEHKD 92 (383)
T ss_pred cCCceEEEEECCCCcc-hhhhchHHHHHHHHhcC----ce--EEEEeCc--------------------------hhhHH
Confidence 4678999999999998 99999999999888873 23 3444543 12255
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
++++|++.. .|++.+..+. .-..-+.+..+.+.+.+.+...+.
T Consensus 93 ~~~~y~i~g--------------fPtl~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 93 LCEKYGIQG--------------FPTLKVFRPG-KKPIDYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred HHHhcCCcc--------------CcEEEEEcCC-CceeeccCcccHHHHHHHHHHhhc
Confidence 777777653 5777777766 333344446777777776666554
No 154
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=96.58 E-value=0.029 Score=45.34 Aligned_cols=123 Identities=10% Similarity=0.048 Sum_probs=66.9
Q ss_pred CCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHH-HhhccCCCeeEEEE-EeCC-CCCCHHHHHHHHHHcC--C
Q 042757 121 NRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDI-LDSKKNLKILPIFV-TIDP-QRDTPAHLRAYLKEFN--S 195 (271)
Q Consensus 121 G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~-l~~~~~~~v~~v~I-svDp-~~Dt~~~l~~~~~~~~--~ 195 (271)
.+..+.+++.||+-+|...|..-.. -..--|.+..+.+. +.. ++++...| +.|. --.+-.-++..++.-. .
T Consensus 27 y~~W~s~~l~GKVrviq~iAGr~sa-ke~N~~l~~aik~a~f~~---d~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~ 102 (160)
T PF09695_consen 27 YQPWNSAQLPGKVRVIQHIAGRSSA-KEMNAPLIEAIKAAKFPH---DKYQTTTIINLDDAIWGTGGFVRSSAEDSKKEF 102 (160)
T ss_pred ccccCccccCCCEEEEEEeccCCch-hHhhHHHHHHHHHcCCCc---cceeEEEEEecccccccchHHHHHHHHHhhhhC
Confidence 3445566789999988888776643 33444555555544 332 35665443 4431 1122223333333221 1
Q ss_pred cee-eecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 196 RIV-GLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 196 ~~~-~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
.|. ++.+... .+.+++++. ..+..++++|++|+|++...+.++++++.+.|.
T Consensus 103 p~s~~vlD~~G---~~~~aW~L~-------------~~~SaiiVlDK~G~V~F~k~G~Ls~~Ev~qVi~ 155 (160)
T PF09695_consen 103 PWSQFVLDSNG---VVRKAWQLQ-------------EESSAIIVLDKQGKVQFVKEGALSPAEVQQVIA 155 (160)
T ss_pred CCcEEEEcCCC---ceeccccCC-------------CCCceEEEEcCCccEEEEECCCCCHHHHHHHHH
Confidence 121 1111111 112222221 124568999999999999999999999877665
No 155
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.54 E-value=0.027 Score=49.35 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=60.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe-CCCCCCHHHHHHHHHH-------------cCC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI-DPQRDTPAHLRAYLKE-------------FNS 195 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv-Dp~~Dt~~~l~~~~~~-------------~~~ 195 (271)
.+|.+++.|.-..||. |......+.++.+. +...|+++.+.+ .+ ++.......+.. +..
T Consensus 116 ~ak~~I~vFtDp~Cpy-C~kl~~~l~~~~~~----g~V~v~~ip~~~l~~--~S~~~a~ailca~d~~~a~~~~~~~~~~ 188 (251)
T PRK11657 116 DAPRIVYVFADPNCPY-CKQFWQQARPWVDS----GKVQLRHILVGIIKP--DSPGKAAAILAAKDPAKALQEYEASGGK 188 (251)
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHhhc----CceEEEEEeccccCc--chHHHHHHHHhccCHHHHHHHHHHhhhc
Confidence 3578899999999997 99988887776542 212344444332 22 232322222111 110
Q ss_pred -ceeeecC-CHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 196 -RIVGLTG-PVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 196 -~~~~l~~-~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
....... +.+....+.+.+. .+..+++..+|++|+.|.+|++...-|. ..+++|.+.|.
T Consensus 189 ~~~~~~~~~~~~~~~~i~~n~~--------l~~~lGv~GTPaiv~~d~~G~~~~v~G~-~~~~~L~~~l~ 249 (251)
T PRK11657 189 LGLKPPASIPAAVRKQLADNQK--------LMDDLGANATPAIYYMDKDGTLQQVVGL-PDPAQLAEIMG 249 (251)
T ss_pred cCCCccccCCHHHHHHHHHHHH--------HHHHcCCCCCCEEEEECCCCCEEEecCC-CCHHHHHHHhC
Confidence 0000100 1111111111111 1233456679999999999976544443 46777766553
No 156
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.47 E-value=0.028 Score=43.36 Aligned_cols=95 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+.+.+||-|+|+| |. |.. +|+..++..++.+.. ..|.+.-|.+|...++ +-..
T Consensus 17 ~~~~vlV~F~A~~-Pw-c~k-~~~~~~LA~e~~~aa-~~v~lakVd~~d~~~~-----------------------~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PY-GEK-HEAFTRLAESSASAT-DDLLVAEVGIKDYGEK-----------------------LNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CC-CCC-hHHHHHHHHHHHhhc-CceEEEEEecccccch-----------------------hhHH
Confidence 4578999999955 33 443 588888888886543 2344444443311001 1145
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCe--EEEEecCC-CCHHHHHHHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLE--VVRCFGVE-YTAEELAEEISK 264 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~--iv~~~~~~-~~~~~l~~~i~~ 264 (271)
++++|+|.-. ..|+++|.. +|. -...|.++ -+.+.|.+.|.+
T Consensus 70 L~~~y~I~~~------------gyPTl~lF~-~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 70 LGERYKLDKE------------SYPVIYLFH-GGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHHHhCCCcC------------CCCEEEEEe-CCCcCCCccCCCCcccHHHHHHHHHh
Confidence 7888876410 257776765 443 22356664 788888776654
No 157
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.45 E-value=0.026 Score=44.57 Aligned_cols=121 Identities=10% Similarity=0.003 Sum_probs=67.2
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCC-CHHHHHHH--HHHcCCc-e--------
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRD-TPAHLRAY--LKEFNSR-I-------- 197 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D-t~~~l~~~--~~~~~~~-~-------- 197 (271)
.++++|+.|+-.+||. |....+.+.++...++ ++.+++..+--..+ +....+.. +...++. +
T Consensus 4 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~~~~~~-----~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf 77 (154)
T cd03023 4 NGDVTIVEFFDYNCGY-CKKLAPELEKLLKEDP-----DVRVVFKEFPILGESSVLAARVALAVWKNGPGKYLEFHNALM 77 (154)
T ss_pred CCCEEEEEEECCCChh-HHHhhHHHHHHHHHCC-----CceEEEEeCCccCcchHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 4789999999999997 9999999888776553 34555444311111 11111111 1111110 0
Q ss_pred e-eecCCHHHHHHHHHHcCceeeeec----------------cCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHH
Q 042757 198 V-GLTGPVGAIRQMAQEYRVFFKKVE----------------EEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAE 260 (271)
Q Consensus 198 ~-~l~~~~~~~~~~~~~~gv~~~~~~----------------~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~ 260 (271)
. .-..+.+.+.++++++|+...... .....++|..+|+++ || |++ +.+..+.+.+.+
T Consensus 78 ~~~~~~~~~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~-v~--g~~---~~G~~~~~~l~~ 151 (154)
T cd03023 78 ATRGRLNEESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFI-IG--DTV---IPGAVPADTLKE 151 (154)
T ss_pred hcCCCCCHHHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEE-EC--CEE---ecCCCCHHHHHH
Confidence 0 001245567777888886543210 011346788899855 44 543 466677777776
Q ss_pred HH
Q 042757 261 EI 262 (271)
Q Consensus 261 ~i 262 (271)
.|
T Consensus 152 ~i 153 (154)
T cd03023 152 AI 153 (154)
T ss_pred Hh
Confidence 65
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.34 E-value=0.092 Score=45.47 Aligned_cols=28 Identities=11% Similarity=-0.048 Sum_probs=23.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAI 158 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~ 158 (271)
.|+.+++.|.-..||. |....+.|.++.
T Consensus 106 ~~k~~I~vFtDp~Cpy-Ckkl~~~l~~~~ 133 (232)
T PRK10877 106 QEKHVITVFTDITCGY-CHKLHEQMKDYN 133 (232)
T ss_pred CCCEEEEEEECCCChH-HHHHHHHHHHHh
Confidence 4788999999999996 999887777654
No 159
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.31 E-value=0.064 Score=44.99 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=29.4
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.++.+++.|....||. |....+.+.+ . ..+.+|.++.+.+.
T Consensus 76 ~~~~~i~~f~D~~Cp~-C~~~~~~l~~----~--~~~v~v~~~~~p~~ 116 (197)
T cd03020 76 NGKRVVYVFTDPDCPY-CRKLEKELKP----N--ADGVTVRIFPVPIL 116 (197)
T ss_pred CCCEEEEEEECCCCcc-HHHHHHHHhh----c--cCceEEEEEEcCcC
Confidence 4789999999999997 9998888776 1 11234555555554
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.31 E-value=0.029 Score=44.23 Aligned_cols=76 Identities=7% Similarity=0.061 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCC
Q 042757 147 GPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGD 226 (271)
Q Consensus 147 C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~ 226 (271)
+....-.|.++.++|.. .++.++-|.+|.+ .+++.+|||.
T Consensus 51 ~~D~avvleELa~e~~~---~~v~~akVDiD~~----------------------------~~LA~~fgV~--------- 90 (132)
T PRK11509 51 VSDNPVMIGELLREFPD---YTWQVAIADLEQS----------------------------EAIGDRFGVF--------- 90 (132)
T ss_pred cccHHHHHHHHHHHhcC---CceEEEEEECCCC----------------------------HHHHHHcCCc---------
Confidence 55555566666666641 2466666666532 4567777764
Q ss_pred cceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 227 DYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 227 ~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
..|+++++ ++|+++..+.+..+.+++.+.|+++|..
T Consensus 91 -----siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 91 -----RFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred -----cCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 46776666 6999999998888899999999998864
No 161
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.12 E-value=0.016 Score=51.56 Aligned_cols=94 Identities=13% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQM 210 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 210 (271)
...|+|+|+|.||+- .+...|.+.+..+.+.++.. .-++|+-.||-... ..+
T Consensus 13 ~elvfv~FyAdWCrF-Sq~L~piF~EAa~~~~~e~P-~~kvvwg~VDcd~e--------------------------~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRF-SQMLKPIFEEAAAKFKQEFP-EGKVVWGKVDCDKE--------------------------DDI 64 (375)
T ss_pred ceEEeeeeehhhchH-HHHHhHHHHHHHHHHHHhCC-CcceEEEEcccchh--------------------------hHH
Confidence 468999999999996 99999999999999887753 24566667764211 124
Q ss_pred HHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEE-EecCCCCHHHHHHHHHHHhh
Q 042757 211 AQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVR-CFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 211 ~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~-~~~~~~~~~~l~~~i~~lL~ 267 (271)
+.+|.| ...|++=|+ .+|.++. -|.+.-+.+.+.+-|+..+.
T Consensus 65 a~ky~I--------------~KyPTlKvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 65 ADKYHI--------------NKYPTLKVF-RNGEMMKREYRGQRSVEALIEFIEKQLS 107 (375)
T ss_pred hhhhcc--------------ccCceeeee-eccchhhhhhccchhHHHHHHHHHHHhc
Confidence 455544 334554444 6888876 47777888888888877654
No 162
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.88 E-value=0.075 Score=45.13 Aligned_cols=127 Identities=13% Similarity=0.189 Sum_probs=80.9
Q ss_pred CCeEEEcCCCCeeecCc-CCCCEEEEE--E-----eeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH
Q 042757 112 GPFTLIDTENRLVTENN-FLGNWVLLY--F-----GYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP 183 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~-~~Gk~vll~--F-----~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~ 183 (271)
-+..+...+| +.+|+| |.||-.||. | |.-.||. |-..+..+.-....|.. .+|.++.||-.| .
T Consensus 53 K~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~g-CS~laD~~dGa~~HL~~---~dv~lv~VsRAP----l 123 (247)
T COG4312 53 KDYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPG-CSFLADHWDGAVAHLEH---HDVTLVAVSRAP----L 123 (247)
T ss_pred ceeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCc-hhhHHhhhhhhhhhHhh---cCceEEEEecCc----H
Confidence 3556667777 468888 477754332 2 3346886 99999888877777774 479999999654 6
Q ss_pred HHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeecc-CC-Cccee---------ecceeEEEEcCCCeEEEEec
Q 042757 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEE-EG-DDYLV---------ESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~-~~-~~y~v---------~~~p~~~lID~~G~iv~~~~ 250 (271)
+.+..|-+..|-.|+.++.... .+-+.|.+.+...+. .| ..|.. .+...+|.-+..|+|...|+
T Consensus 124 ~~l~~~k~rmGW~f~w~Ss~~s---~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty~ 198 (247)
T COG4312 124 EELVAYKRRMGWQFPWVSSTDS---DFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTYS 198 (247)
T ss_pred HHHHHHHHhcCCcceeEeccCc---ccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCccccccc
Confidence 8899999999877776654322 234556554433321 11 11221 12345566688998876664
No 163
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=95.75 E-value=0.14 Score=39.54 Aligned_cols=107 Identities=18% Similarity=0.142 Sum_probs=63.5
Q ss_pred cCcCCCCE-EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCH
Q 042757 126 ENNFLGNW-VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPV 204 (271)
Q Consensus 126 l~~~~Gk~-vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~ 204 (271)
|+++++|- +||.|..+--.+.=..++..|++-...+.+ .++.++.|+-+.. .. .+-.-+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~e---Rdi~v~~i~~~~~-~~---------------~~~~~~~ 63 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDE---RDIVVIVITGDGA-RS---------------PGKPLSP 63 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhcccc---CceEEEEEeCCcc-cc---------------ccCcCCH
Confidence 45666653 455555444432234444555554444443 3566665532211 11 0012245
Q ss_pred HHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 205 GAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 205 ~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
..+..+.+.|++.. ....++||++||.+-.+++.+++.++|.+.|..
T Consensus 64 ~~~~~lr~~l~~~~-------------~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 64 EDIQALRKRLRIPP-------------GGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHHHHHhCCCC-------------CceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 56677888887641 134569999999999999999999999888764
No 164
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.60 E-value=0.12 Score=42.16 Aligned_cols=88 Identities=10% Similarity=0.008 Sum_probs=42.4
Q ss_pred eeecCcCCCCEEEEEEeeCCCCCChHHHHH-HH--HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceee
Q 042757 123 LVTENNFLGNWVLLYFGYTSSPDVGPEQVQ-MM--AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVG 199 (271)
Q Consensus 123 ~v~l~~~~Gk~vll~F~at~Cp~~C~~el~-~l--~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~ 199 (271)
.+..+.-.+|+++|.++++||.- |..... .+ .++.+.+.+ .+|.|-+|. |....+..+...
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~w-ChvM~~esf~d~eVa~~lN~------~FI~VkvDr--ee~Pdid~~y~~------- 92 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHW-CHVMERESFSDPEVAEYLNR------NFIPVKVDR--EERPDIDKIYMN------- 92 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HH-HHHHHHHTTT-HHHHHHHHH------H-EEEEEET--TT-HHHHHHHHH-------
T ss_pred HHHHHHhcCCcEEEEEEecCCcc-hhhhcccCcCCHHHHHHHhC------CEEEEEecc--ccCccHHHHHHH-------
Confidence 34444446899999999999986 976442 11 223333332 246677774 332223222111
Q ss_pred ecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 200 LTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 200 l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
++.... +....|.+++++|+|+..+..
T Consensus 93 ----------~~~~~~-------------~~gGwPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 93 ----------AVQAMS-------------GSGGWPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp ----------HHHHHH-------------S---SSEEEEE-TTS-EEEEE
T ss_pred ----------HHHHhc-------------CCCCCCceEEECCCCCeeeee
Confidence 111100 111368899999999999874
No 165
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.55 E-value=0.086 Score=37.15 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=17.7
Q ss_pred eeCCCCCChHHHHHHHHHHHHHHh
Q 042757 139 GYTSSPDVGPEQVQMMAKAIDILD 162 (271)
Q Consensus 139 ~at~Cp~~C~~el~~l~~l~~~l~ 162 (271)
..++||. |+.....++++...++
T Consensus 6 ~~~~C~~-C~~~~~~~~~~~~~~~ 28 (76)
T PF13192_consen 6 FSPGCPY-CPELVQLLKEAAEELG 28 (76)
T ss_dssp ECSSCTT-HHHHHHHHHHHHHHTT
T ss_pred eCCCCCC-cHHHHHHHHHHHHhcC
Confidence 4566997 9988888888877664
No 166
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.19 Score=40.62 Aligned_cols=101 Identities=11% Similarity=0.153 Sum_probs=61.1
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCH-
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPV- 204 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~- 204 (271)
-.||..++.|-...|+. |...-..+ .++++.+.. .+.++-+.+.... ....-.|+.
T Consensus 40 ~~~Kylllmfes~~C~y-C~~~KKd~~~~krlrEylk~----hf~~~~l~i~~sk---------------pv~f~~g~ke 99 (182)
T COG2143 40 PNDKYLLLMFESNGCSY-CERFKKDLKNVKRLREYLKE----HFSAYYLNISYSK---------------PVLFKVGDKE 99 (182)
T ss_pred ccCcEEEEEEcCCCChH-HHHHHHhhcchHHHHHHHhh----CeEEEEEEeccCc---------------ceEeecCcee
Confidence 46899999999999996 96543332 233333332 2333333332110 111111211
Q ss_pred --HHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 205 --GAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 205 --~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
...+++++.|+| ..+|++++.|.+|+.+...+|-+.+++.+..++
T Consensus 100 e~~s~~ELa~kf~v--------------rstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 100 EKMSTEELAQKFAV--------------RSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eeecHHHHHHHhcc--------------ccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 112355666654 468999999999999999988888888766554
No 167
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=95.47 E-value=0.044 Score=42.43 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=29.4
Q ss_pred CCCEEEEEEeeC-------CCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 130 LGNWVLLYFGYT-------SSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 130 ~Gk~vll~F~at-------~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
.|+.++|+|.++ |||+ |....|.+++......+ +..+|-+.+
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~~~----~~~lv~v~V 66 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKAPE----NARLVYVEV 66 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-ST----TEEEEEEE-
T ss_pred CCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhCCC----CceEEEEEc
Confidence 467777777654 9998 99999999998887442 466665655
No 168
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.11 E-value=0.05 Score=37.73 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=17.2
Q ss_pred EEEEeeCCCCCChHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l 157 (271)
+..||++|||+ |....+.|.++
T Consensus 2 v~ly~~~~C~~-C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGY-CAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 56799999997 99877766543
No 169
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.87 E-value=0.16 Score=41.24 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=71.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHH--HHcCCcee---------
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL--KEFNSRIV--------- 198 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~--~~~~~~~~--------- 198 (271)
.++++|+.|+--.||. |...-+.+.++.+++..+ ..++.+.+.+... .+....+.+. ...+..+.
T Consensus 14 ~~~~~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~-~~~~aa~a~~aa~~~~~~~~~~~~lf~~~ 89 (178)
T cd03019 14 SGKPEVIEFFSYGCPH-CYNFEPILEAWVKKLPKD--VKFEKVPVVFGGG-EGEPLARAFYAAEALGLEDKLHAALFEAI 89 (178)
T ss_pred CCCcEEEEEECCCCcc-hhhhhHHHHHHHHhCCCC--ceEEEcCCccccc-cchHHHHHHHHHHHcCcHhhhhHHHHHHH
Confidence 6789999999999997 999999999988877321 2344444443321 1111222211 11110000
Q ss_pred ----eecCCHHHHHHHHHHcCceeeeec----------------cCCCcceeecceeEEEEcCCCeEEEEecCCCCHHHH
Q 042757 199 ----GLTGPVGAIRQMAQEYRVFFKKVE----------------EEGDDYLVESSHNMYLMNPSLEVVRCFGVEYTAEEL 258 (271)
Q Consensus 199 ----~l~~~~~~~~~~~~~~gv~~~~~~----------------~~~~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l 258 (271)
.-..+.+.+.+++.+.|+...... .....++|..+|+++| +|+.+-. +..++..+.
T Consensus 90 ~~~~~~~~~~~~l~~~a~~~Gl~~~~~~~~~~s~~~~~~i~~~~~~~~~~gi~gTPt~iI---nG~~~~~-~~~~~~~~~ 165 (178)
T cd03019 90 HEKRKRLLDPDDIRKIFLSQGVDKKKFDAAYNSFSVKALVAKAEKLAKKYKITGVPAFVV---NGKYVVN-PSAIGGDDT 165 (178)
T ss_pred HHhCCCCCCHHHHHHHHHHhCCCHHHHHHHHhCHHHHHHHHHHHHHHHHcCCCCCCeEEE---CCEEEEC-hhhccchhH
Confidence 001235678888888887432211 0113467888999776 5654322 222343335
Q ss_pred HHHHHHHhhh
Q 042757 259 AEEISKEMKK 268 (271)
Q Consensus 259 ~~~i~~lL~~ 268 (271)
.+.|..++..
T Consensus 166 ~~~~~~~~~~ 175 (178)
T cd03019 166 LQVLDELIEK 175 (178)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 170
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.52 E-value=0.19 Score=36.00 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
++.|+.+|||. |......|+++..++. ++.+..|.++.
T Consensus 3 v~iy~~~~C~~-C~~a~~~L~~l~~~~~-----~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPY-CVRAKELAEKLSEERD-----DFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChh-HHHHHHHHHhhccccc-----CCcEEEEECCC
Confidence 56789999997 9999999999886542 46666677663
No 171
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=94.34 E-value=0.049 Score=51.91 Aligned_cols=34 Identities=12% Similarity=0.019 Sum_probs=31.5
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhc
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSK 164 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~ 164 (271)
.+|=|||-|+|+||++ |....|.+++|.+.+++.
T Consensus 383 e~KdVLvEfyAPWCgH-Ck~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGH-CKALAPIYEELAEKYKDD 416 (493)
T ss_pred cccceEEEEcCcccch-hhhhhhHHHHHHHHhcCC
Confidence 4788999999999998 999999999999999864
No 172
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=93.98 E-value=0.15 Score=35.89 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=19.3
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAI 158 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~ 158 (271)
++.|+.+|||. |....+.|.++.
T Consensus 1 V~~f~~~~Cp~-C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPY-CKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChh-HHHHHHHHHHcC
Confidence 46789999997 999888888765
No 173
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=93.62 E-value=0.85 Score=34.46 Aligned_cols=86 Identities=19% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
..++++|+=..|.|| +-...+..+++...... .++.+..+-+- ...+.-.+
T Consensus 18 ~~~~~~iFKHSt~C~-IS~~a~~~~e~~~~~~~----~~~~~y~l~v~------------------------~~R~vSn~ 68 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCP-ISAMALREFEKFWEESP----DEIPVYYLDVI------------------------EYRPVSNA 68 (105)
T ss_dssp --SEEEEEEE-TT-H-HHHHHHHHHHHHHHHHT--------EEEEEGG------------------------GGHHHHHH
T ss_pred ccCcEEEEEeCCCCh-hhHHHHHHHHHHhhcCC----ccceEEEEEEE------------------------eCchhHHH
Confidence 467888877888886 45555555555554433 23666666542 12344467
Q ss_pred HHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEec-CCCCHHHH
Q 042757 210 MAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCFG-VEYTAEEL 258 (271)
Q Consensus 210 ~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~~-~~~~~~~l 258 (271)
++..|||... +|.++||. +|++++.-. ..++.+.|
T Consensus 69 IAe~~~V~He-------------SPQ~ili~-~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 69 IAEDFGVKHE-------------SPQVILIK-NGKVVWHASHWDITAEAL 104 (105)
T ss_dssp HHHHHT-----------------SSEEEEEE-TTEEEEEEEGGG-SHHHH
T ss_pred HHHHhCCCcC-------------CCcEEEEE-CCEEEEECccccCCHHhc
Confidence 8888988643 78888885 999998864 35666554
No 174
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.37 E-value=0.24 Score=38.13 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=29.3
Q ss_pred CCCEEEEEEee--------CCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 130 LGNWVLLYFGY--------TSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 130 ~Gk~vll~F~a--------t~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
+|+-+.++|.+ +|||+ |....|.+.+..+... .++.+|-+-+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~ap----~~~~~v~v~V 73 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKHAP----EDVHFVHVYV 73 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHhCC----CceEEEEEEe
Confidence 45556666654 69998 9999999998888544 3566555544
No 175
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.16 E-value=0.85 Score=44.60 Aligned_cols=31 Identities=10% Similarity=-0.137 Sum_probs=24.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDIL 161 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l 161 (271)
.++..+-.|..++||. ||.....++++..+.
T Consensus 475 ~~~~~i~v~~~~~C~~-Cp~~~~~~~~~~~~~ 505 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTL-CPDVVLAAQRIASLN 505 (555)
T ss_pred CCCeEEEEEECCCCCC-cHHHHHHHHHHHHhC
Confidence 4555577789999997 998888888877764
No 176
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=92.80 E-value=0.95 Score=34.25 Aligned_cols=87 Identities=8% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeec-----------
Q 042757 154 MAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVE----------- 222 (271)
Q Consensus 154 l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~----------- 222 (271)
|.+...++.+. +|++|.|++. +++.+++|.+..+.++..+.++. .++-+++|+......
T Consensus 2 L~~~~~~l~~~---gv~lv~I~~g----~~~~~~~f~~~~~~p~~ly~D~~---~~lY~~lg~~~~~~~~~~~~~~~~~~ 71 (115)
T PF13911_consen 2 LSRRKPELEAA---GVKLVVIGCG----SPEGIEKFCELTGFPFPLYVDPE---RKLYKALGLKRGLKWSLLPPALWSGL 71 (115)
T ss_pred hhHhHHHHHHc---CCeEEEEEcC----CHHHHHHHHhccCCCCcEEEeCc---HHHHHHhCCccccccCCCchHHHHHH
Confidence 44555666543 6888888864 56669999988776666555543 344455554331100
Q ss_pred --------cCC--Ccc---eeecceeEEEEcCCCeEEEEec
Q 042757 223 --------EEG--DDY---LVESSHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 223 --------~~~--~~y---~v~~~p~~~lID~~G~iv~~~~ 250 (271)
..+ .++ .+...+.+||+|++|+|++.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 72 SNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 000 000 1223456899999999999884
No 177
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=92.60 E-value=0.56 Score=39.69 Aligned_cols=130 Identities=10% Similarity=0.021 Sum_probs=67.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHH---HHHHHHHhhccCCCeeEEEEEeCCC-CCCHHHHHHHH--HHcCC--ce----
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMM---AKAIDILDSKKNLKILPIFVTIDPQ-RDTPAHLRAYL--KEFNS--RI---- 197 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l---~~l~~~l~~~~~~~v~~v~IsvDp~-~Dt~~~l~~~~--~~~~~--~~---- 197 (271)
.|++.|+.|+.-.||. |...-+.+ ..+.+.+.+ ++.++.+-++-. .......+.|. ...+. .+
T Consensus 36 ~~~~~VvEffdy~Cph-C~~~~~~l~~~~~~~~~~~~----~v~~~~~~~~f~~~~~~~~~~a~~~a~~~~~~~k~~~~l 110 (207)
T PRK10954 36 AGEPQVLEFFSFYCPH-CYQFEEVYHVSDNVKKKLPE----GTKMTKYHVEFLGPLGKELTQAWAVAMALGVEDKVTPPL 110 (207)
T ss_pred CCCCeEEEEeCCCCcc-HHHhcccccchHHHHHhCCC----CCeEEEecccccchhhHHHHHHHHHHHHhCcHHHHHHHH
Confidence 3677788888889997 98877655 666666653 344433322110 11111112221 11000 00
Q ss_pred -------eeecCCHHHHHHHHHHcCceeeeec----------------cCCCcceeecceeEEEEcCCCeEEEEecC---
Q 042757 198 -------VGLTGPVGAIRQMAQEYRVFFKKVE----------------EEGDDYLVESSHNMYLMNPSLEVVRCFGV--- 251 (271)
Q Consensus 198 -------~~l~~~~~~~~~~~~~~gv~~~~~~----------------~~~~~y~v~~~p~~~lID~~G~iv~~~~~--- 251 (271)
.. ..+.+.+.+++.+.|+...... .....++|..+|+++| +|+.+-.-..
T Consensus 111 f~~i~~~~~-~~~~~~L~~~a~~~Gld~~~f~~~l~s~~~~~~v~~~~~~a~~~gI~gtPtfiI---nGky~v~~~~~~~ 186 (207)
T PRK10954 111 FEGVQKTQT-IQSAADIRDVFIKAGVKGEDYDAAWNSFVVKSLVAQQEKAAADLQLRGVPAMFV---NGKYMVNNQGMDT 186 (207)
T ss_pred HHHHHccCC-CCCHHHHHHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHcCCCCCCEEEE---CCEEEEccccccc
Confidence 01 1356678888888887532111 0125578888998655 4664322111
Q ss_pred ---CCCHHHHHHHHHHHhhh
Q 042757 252 ---EYTAEELAEEISKEMKK 268 (271)
Q Consensus 252 ---~~~~~~l~~~i~~lL~~ 268 (271)
.-+.+++.+.|.-|+++
T Consensus 187 ~~~~~~~~~~~~~i~~L~~k 206 (207)
T PRK10954 187 SSMDVYVQQYADVVKFLLEK 206 (207)
T ss_pred cchhhhHHHHHHHHHHHHcC
Confidence 12456777777766653
No 178
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=91.96 E-value=1.3 Score=33.00 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.7
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
..|..++||. |......|++. ++.+..|.+.....+.+.+++++...+
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~----------~i~~~~idi~~~~~~~~~l~~~~~~~~ 49 (105)
T cd02977 2 TIYGNPNCST-SRKALAWLEEH----------GIEYEFIDYLKEPPTKEELKELLAKLG 49 (105)
T ss_pred EEEECCCCHH-HHHHHHHHHHc----------CCCcEEEeeccCCCCHHHHHHHHHhcC
Confidence 4578899997 98876655552 344555666545568889999988876
No 179
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=91.80 E-value=1.7 Score=35.17 Aligned_cols=114 Identities=17% Similarity=0.177 Sum_probs=72.4
Q ss_pred eeecCcC-CCCEEEEEE-eeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC--cee
Q 042757 123 LVTENNF-LGNWVLLYF-GYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS--RIV 198 (271)
Q Consensus 123 ~v~l~~~-~Gk~vll~F-~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~--~~~ 198 (271)
+++++++ +||-++|+= -...-|..|...+|-+.+-.++|+.++-+ +++.||+| +|-.+++|.+.++. ...
T Consensus 34 tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd--~iicvSVn----DpFv~~aW~k~~g~~~~V~ 107 (171)
T KOG0541|consen 34 TVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVD--EIICVSVN----DPFVMKAWAKSLGANDHVK 107 (171)
T ss_pred eEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCc--EEEEEecC----cHHHHHHHHhhcCccceEE
Confidence 7888885 898777742 22223544788899999999999986522 45678875 78999999999864 344
Q ss_pred eecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 199 GLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 199 ~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
++.+.. .++.+.+|+..+.... + .++..-..-.+++ ||++....
T Consensus 108 f~aD~~---g~ftk~lgleld~~d~-~--~g~RS~R~a~vve-ngkV~~~n 151 (171)
T KOG0541|consen 108 FVADPA---GEFTKSLGLELDLSDK-L--LGVRSRRYALVVE-NGKVTVVN 151 (171)
T ss_pred EEecCC---Cceeeeccceeeeccc-c--CccccccEEEEEe-CCeEEEEE
Confidence 444322 4566777776543221 1 1122223335554 99888765
No 180
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.89 E-value=0.76 Score=36.55 Aligned_cols=50 Identities=14% Similarity=-0.003 Sum_probs=38.8
Q ss_pred eecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 124 VTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 124 v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
+.+.+-.++++|+.|+.-.||. |....+.+.++.+++-+. .+|.+++..+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~-C~~~~~~~~~~~~~~i~~--~~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPH-CAKFHEELEKLLKKYIDP--GKVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT--TTEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHh-HHHHHHHHhhhhhhccCC--CceEEEEEEc
Confidence 3455556799999999999997 999999999999888433 3788888876
No 181
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=90.35 E-value=0.72 Score=31.04 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=21.5
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
++.|+.+|||+ |......|.+ . ++.+..+.+|.
T Consensus 2 v~l~~~~~c~~-c~~~~~~l~~-------~---~i~~~~~~i~~ 34 (73)
T cd02976 2 VTVYTKPDCPY-CKATKRFLDE-------R---GIPFEEVDVDE 34 (73)
T ss_pred EEEEeCCCChh-HHHHHHHHHH-------C---CCCeEEEeCCC
Confidence 46688999997 9876555543 1 35555566664
No 182
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.77 E-value=1.1 Score=38.69 Aligned_cols=59 Identities=17% Similarity=0.095 Sum_probs=40.2
Q ss_pred cCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCC
Q 042757 118 DTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ 179 (271)
Q Consensus 118 d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~ 179 (271)
..++..+...+..++++++.|.--.||. |....+.|.+.+...++.. -+...++-.|+.
T Consensus 71 ~~~~~~~~~G~~~~~v~v~~f~d~~Cp~-C~~~~~~l~~~~i~~~~~~--~~~~~~~f~~~~ 129 (244)
T COG1651 71 TPDGKDVVLGNPYAPVTVVEFFDYTCPY-CKEAFPELKKKYIDDGKVR--LVLREFPFLDPA 129 (244)
T ss_pred cCCCCcccccCCCCCceEEEEecCcCcc-HHHHHHHHHHHhhhcCCCc--eEEEEeecCCCC
Confidence 4455555566666799999999999997 9999999988766655431 233344445553
No 183
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=88.84 E-value=3.2 Score=40.13 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.7
Q ss_pred cCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHH
Q 042757 128 NFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDI 160 (271)
Q Consensus 128 ~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~ 160 (271)
.+.++.-+..|....||. ||.....++++...
T Consensus 113 ~~~~~~~i~~fv~~~Cp~-Cp~~v~~~~~~a~~ 144 (517)
T PRK15317 113 ALDGDFHFETYVSLSCHN-CPDVVQALNLMAVL 144 (517)
T ss_pred hcCCCeEEEEEEcCCCCC-cHHHHHHHHHHHHh
Confidence 345566788999999997 99988888887764
No 184
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.38 E-value=1.6 Score=40.52 Aligned_cols=44 Identities=14% Similarity=-0.070 Sum_probs=34.6
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
....||.|++.||++ |+...+...++...+... ..+.+..+..+
T Consensus 162 ~~~~lv~f~aPwc~~-ck~l~~~~~~~a~~~~~~--~~v~~~~~d~~ 205 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGH-CKKLAPEWEKLAKLLKSK--ENVELGKIDAT 205 (383)
T ss_pred CcceEEEEeccccHH-hhhcChHHHHHHHHhccC--cceEEEeeccc
Confidence 346788889999997 999999999999988752 46777666543
No 185
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=88.33 E-value=2.6 Score=30.22 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=24.3
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
++.|..+|||. |......|.++..+.. .+.+..+.++
T Consensus 2 V~vys~~~Cp~-C~~ak~~L~~~~~~~~-----~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPY-CVRAKQLAEKLAIERA-----DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCcc-HHHHHHHHHHhCcccC-----CCcEEEEECC
Confidence 45688899997 9988777777543321 3445555554
No 186
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=88.18 E-value=2.5 Score=29.03 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=20.6
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+.|..++||. |......|++ .++.+..+.++
T Consensus 4 ~ly~~~~C~~-C~ka~~~L~~----------~gi~~~~~di~ 34 (73)
T cd03027 4 TIYSRLGCED-CTAVRLFLRE----------KGLPYVEINID 34 (73)
T ss_pred EEEecCCChh-HHHHHHHHHH----------CCCceEEEECC
Confidence 4577799997 9887766664 13555556665
No 187
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=88.15 E-value=1.5 Score=29.23 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=16.6
Q ss_pred EEEEeeCCCCCChHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l 157 (271)
++.|..+|||+ |......|.+.
T Consensus 2 v~ly~~~~Cp~-C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPY-CKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc
Confidence 45688999997 98877776653
No 188
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=87.81 E-value=2.5 Score=28.95 Aligned_cols=45 Identities=11% Similarity=0.090 Sum_probs=27.3
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHc
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEF 193 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~ 193 (271)
+..|..++||. |......|++ .++.+..+.++. .++..+++.+..
T Consensus 2 i~ly~~~~Cp~-C~~ak~~L~~----------~~i~~~~i~i~~---~~~~~~~~~~~~ 46 (75)
T cd03418 2 VEIYTKPNCPY-CVRAKALLDK----------KGVDYEEIDVDG---DPALREEMINRS 46 (75)
T ss_pred EEEEeCCCChH-HHHHHHHHHH----------CCCcEEEEECCC---CHHHHHHHHHHh
Confidence 45688899997 9887666654 135555566653 244444444433
No 189
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=87.51 E-value=0.86 Score=30.10 Aligned_cols=32 Identities=13% Similarity=0.143 Sum_probs=22.3
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
++.|+..|||. |......|++ .++.+-.+.+|
T Consensus 1 V~vy~~~~C~~-C~~~~~~L~~----------~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPY-CKKAKEFLDE----------KGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHH-HHHHHHHHHH----------TTBEEEEEEGG
T ss_pred cEEEEcCCCcC-HHHHHHHHHH----------cCCeeeEcccc
Confidence 45688999997 9876666632 24666667776
No 190
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=86.94 E-value=1.8 Score=32.59 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=33.1
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
..|+.++|+. |+.....|.+- ++.+-.+.+.-+.-+.+.++++++.++
T Consensus 2 ~iy~~~~C~~-crka~~~L~~~----------~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDT-VKKARKWLEAR----------GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc----------CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 4688999997 98866655542 344444554444468899999998876
No 191
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=86.90 E-value=5.3 Score=38.62 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=25.6
Q ss_pred cCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHH
Q 042757 128 NFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDI 160 (271)
Q Consensus 128 ~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~ 160 (271)
.+.++.-+..|....||. ||.....++++...
T Consensus 114 ~~~~~~~i~~f~~~~Cp~-Cp~~v~~~~~~a~~ 145 (515)
T TIGR03140 114 RLNGPLHFETYVSLTCQN-CPDVVQALNQMALL 145 (515)
T ss_pred hcCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHh
Confidence 345667788999999997 99888888777665
No 192
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.55 E-value=5.8 Score=34.74 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhh
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDS 163 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~ 163 (271)
.||+.+++..+-|||- |-.+--.|--...+++.
T Consensus 57 ~Gk~~v~~igw~gCP~-~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPY-CAAESWALYIALSRFGN 89 (249)
T ss_pred CCeeEEEEEecccCcc-chhhHHHHHHHHHhcCC
Confidence 5999999999999995 99999999888888873
No 193
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.23 E-value=2.3 Score=32.34 Aligned_cols=50 Identities=14% Similarity=-0.007 Sum_probs=35.2
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCc
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSR 196 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~ 196 (271)
..|+.++|+. |......|.+ .++.+.++.+..+..+.+.++++++..+.+
T Consensus 3 ~iY~~~~C~~-c~ka~~~L~~----------~gi~~~~idi~~~~~~~~el~~~~~~~~~~ 52 (115)
T cd03032 3 KLYTSPSCSS-CRKAKQWLEE----------HQIPFEERNLFKQPLTKEELKEILSLTENG 52 (115)
T ss_pred EEEeCCCCHH-HHHHHHHHHH----------CCCceEEEecCCCcchHHHHHHHHHHhcCC
Confidence 3577899997 9886666655 135555666655556889999999987543
No 194
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=85.98 E-value=2.6 Score=29.38 Aligned_cols=20 Identities=5% Similarity=0.105 Sum_probs=15.7
Q ss_pred EEEeeCCCCCChHHHHHHHHH
Q 042757 136 LYFGYTSSPDVGPEQVQMMAK 156 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~ 156 (271)
..|+.+|||. |......|++
T Consensus 2 ~ly~~~~Cp~-C~~a~~~L~~ 21 (79)
T TIGR02181 2 TIYTKPYCPY-CTRAKALLSS 21 (79)
T ss_pred EEEecCCChh-HHHHHHHHHH
Confidence 4588999997 9887777764
No 195
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=85.92 E-value=2.5 Score=29.44 Aligned_cols=22 Identities=9% Similarity=0.208 Sum_probs=16.9
Q ss_pred EEEEeeCCCCCChHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l 157 (271)
++.|...|||. |......|.++
T Consensus 2 v~~y~~~~Cp~-C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPY-CKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHH-HHHHHHHHHHc
Confidence 45688999997 98877777664
No 196
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.98 E-value=2 Score=32.82 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=36.0
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCce
Q 042757 137 YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRI 197 (271)
Q Consensus 137 ~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~ 197 (271)
.|+.++||. |......|.+ .++.+..|.+.....+.+.+.++++..+.++
T Consensus 3 iY~~~~C~~-c~ka~~~L~~----------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~ 52 (117)
T TIGR01617 3 VYGSPNCTT-CKKARRWLEA----------NGIEYQFIDIGEDGPTREELLDILSLLEDGI 52 (117)
T ss_pred EEeCCCCHH-HHHHHHHHHH----------cCCceEEEecCCChhhHHHHHHHHHHcCCCH
Confidence 478899997 9887766665 1455566666555567888999998887433
No 197
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.95 E-value=2.2 Score=33.44 Aligned_cols=51 Identities=12% Similarity=0.002 Sum_probs=34.7
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCc
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSR 196 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~ 196 (271)
+..|..++|+. |......|.+ .++.+-.+.+..+..+.+.+.++++..+.+
T Consensus 2 i~iY~~~~C~~-C~ka~~~L~~----------~gi~~~~idi~~~~~~~~eL~~~l~~~~~g 52 (131)
T PRK01655 2 VTLFTSPSCTS-CRKAKAWLEE----------HDIPFTERNIFSSPLTIDEIKQILRMTEDG 52 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHH----------cCCCcEEeeccCChhhHHHHHHHHHHhcCC
Confidence 34578899997 9886655544 235555566554556788999999987543
No 198
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=84.81 E-value=1.3 Score=39.57 Aligned_cols=33 Identities=6% Similarity=-0.102 Sum_probs=26.1
Q ss_pred CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhcc
Q 042757 132 NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKK 165 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~ 165 (271)
..-+|.|+|+||.. |...-|.-.++-.++++-+
T Consensus 44 diW~VdFYAPWC~H-CKkLePiWdeVG~elkdig 76 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAH-CKKLEPIWDEVGHELKDIG 76 (468)
T ss_pred CeEEEEeechhhhh-cccccchhHHhCcchhhcC
Confidence 46789999999998 9988887777766666543
No 199
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.67 E-value=2.3 Score=32.20 Aligned_cols=48 Identities=8% Similarity=0.182 Sum_probs=33.5
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 137 YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 137 ~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
.|+.++||. |......|.+ .++.+-.+.+..+..+.+.++++++..+.
T Consensus 3 iY~~~~C~~-c~ka~~~L~~----------~~i~~~~idi~~~~~~~~el~~~~~~~~~ 50 (111)
T cd03036 3 FYEYPKCST-CRKAKKWLDE----------HGVDYTAIDIVEEPPSKEELKKWLEKSGL 50 (111)
T ss_pred EEECCCCHH-HHHHHHHHHH----------cCCceEEecccCCcccHHHHHHHHHHcCC
Confidence 477899997 9887766655 13555556655445678889998888764
No 200
>PRK12559 transcriptional regulator Spx; Provisional
Probab=83.77 E-value=3.6 Score=32.27 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=34.4
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
+..|..++|+. |......|.+- ++.+-.+.+..+..+.+.++++++..+.
T Consensus 2 i~iY~~~~C~~-crkA~~~L~~~----------gi~~~~~di~~~~~s~~el~~~l~~~~~ 51 (131)
T PRK12559 2 VVLYTTASCAS-CRKAKAWLEEN----------QIDYTEKNIVSNSMTVDELKSILRLTEE 51 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc----------CCCeEEEEeeCCcCCHHHHHHHHHHcCC
Confidence 45688899997 98866555441 3445555555555689999999998543
No 201
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=83.16 E-value=4.4 Score=28.48 Aligned_cols=38 Identities=11% Similarity=-0.049 Sum_probs=26.9
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+..|+...||. |....+.+.++..... .++.+..+.+.
T Consensus 1 i~~f~d~~Cp~-C~~~~~~l~~~~~~~~----~~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPY-CYLFEPELEKLLYADD----GGVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHh-HHhhhHHHHHHHhhcC----CcEEEEEeccc
Confidence 45788999997 9999999999874333 34555555443
No 202
>PHA03050 glutaredoxin; Provisional
Probab=81.09 E-value=6.2 Score=29.83 Aligned_cols=22 Identities=14% Similarity=0.158 Sum_probs=16.0
Q ss_pred EEEEeeCCCCCChHHHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l 157 (271)
++.|..+|||. |......|.+.
T Consensus 15 V~vys~~~CPy-C~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPF-CRNALDILNKF 36 (108)
T ss_pred EEEEECCCChH-HHHHHHHHHHc
Confidence 45588899997 98766666554
No 203
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=80.14 E-value=7.3 Score=30.54 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=26.0
Q ss_pred ceeEEEEcCCCeEEEEe----cCCCCHHHHHHHHHHHhhhh
Q 042757 233 SHNMYLMNPSLEVVRCF----GVEYTAEELAEEISKEMKKA 269 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~----~~~~~~~~l~~~i~~lL~~~ 269 (271)
+|.+-|+ +||+++... -...+++.+.+.|....+++
T Consensus 96 SPS~ALf-KdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 96 SPSIALF-KDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp SSEEEEE-ETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred Cchheee-eCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 6777777 699999875 23567788888888877653
No 204
>PRK10026 arsenate reductase; Provisional
Probab=79.87 E-value=29 Score=27.64 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=33.8
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
+..++.+.|.. |+..+..|++- +..+.++-+--+| -+.+.++.+++..+.
T Consensus 4 i~iY~~p~Cst-~RKA~~wL~~~--------gi~~~~~d~~~~p--pt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGT-SRNTLEMIRNS--------GTEPTIIHYLETP--PTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC--------CCCcEEEeeeCCC--cCHHHHHHHHHhCCC
Confidence 45688899986 98877766652 1234444443443 588999999998774
No 205
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=79.86 E-value=4.9 Score=31.53 Aligned_cols=51 Identities=10% Similarity=0.032 Sum_probs=34.9
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCce
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRI 197 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~ 197 (271)
..|..++|+. |......|.+ .++.+-.+.+.-+.-+.+.++++++..+.++
T Consensus 3 ~iY~~~~C~~-crkA~~~L~~----------~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTS-CKKAKTWLNA----------HQLSYKEQNLGKEPLTKEEILAILTKTENGI 53 (132)
T ss_pred EEEeCCCCHH-HHHHHHHHHH----------cCCCeEEEECCCCCCCHHHHHHHHHHhCCCH
Confidence 3577899997 9876544443 2455556666544568899999999876544
No 206
>PRK10638 glutaredoxin 3; Provisional
Probab=78.35 E-value=11 Score=26.64 Aligned_cols=33 Identities=9% Similarity=0.066 Sum_probs=21.4
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
+..|..+|||. |......|++. ++.+..+.+|.
T Consensus 4 v~ly~~~~Cp~-C~~a~~~L~~~----------gi~y~~~dv~~ 36 (83)
T PRK10638 4 VEIYTKATCPF-CHRAKALLNSK----------GVSFQEIPIDG 36 (83)
T ss_pred EEEEECCCChh-HHHHHHHHHHc----------CCCcEEEECCC
Confidence 44577899997 98876666642 34444566664
No 207
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=78.25 E-value=6.3 Score=29.15 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=15.1
Q ss_pred CEEEEEEeeCCCCCChHHHHHHHHH
Q 042757 132 NWVLLYFGYTSSPDVGPEQVQMMAK 156 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el~~l~~ 156 (271)
..++ .|.-+|||. |...-..|.+
T Consensus 8 ~~Vv-vysk~~Cp~-C~~ak~~L~~ 30 (99)
T TIGR02189 8 KAVV-IFSRSSCCM-CHVVKRLLLT 30 (99)
T ss_pred CCEE-EEECCCCHH-HHHHHHHHHH
Confidence 3444 477799997 9876554443
No 208
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=77.90 E-value=34 Score=30.22 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=32.0
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEe
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTI 176 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Isv 176 (271)
++-+|||+|+-..++. |...-..|..|..+|. .++|+-|..
T Consensus 145 ~~~~VVVHiY~~~~~~-C~~mn~~L~~LA~kyp-----~vKFvkI~a 185 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPR-CEIMNSCLECLARKYP-----EVKFVKIRA 185 (265)
T ss_dssp TT-EEEEEEE-TTSCC-HHHHHHHHHHHHHH-T-----TSEEEEEEE
T ss_pred CCcEEEEEEEeCCCch-HHHHHHHHHHHHHhCC-----ceEEEEEeh
Confidence 4569999999999996 9999999999999886 577776654
No 209
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=77.10 E-value=0.69 Score=39.81 Aligned_cols=46 Identities=20% Similarity=0.406 Sum_probs=31.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
.|.|. +-|+++|||. |....+.+..+..--.+- +.+|..|.|++.|
T Consensus 39 ~gewm-i~~~ap~~ps-c~~~~~~~~~~a~~s~dL-~v~va~VDvt~np 84 (248)
T KOG0913|consen 39 TGEWM-IEFGAPWCPS-CSDLIPHLENFATVSLDL-GVKVAKVDVTTNP 84 (248)
T ss_pred chHHH-HHhcCCCCcc-ccchHHHHhccCCccCCC-ceeEEEEEEEecc
Confidence 56664 5588999997 999999988876533222 2456667777665
No 210
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=75.13 E-value=5.5 Score=34.41 Aligned_cols=31 Identities=16% Similarity=0.005 Sum_probs=25.4
Q ss_pred cceeEEEEcCCCeEEEEecCCCCHHHHHHHH
Q 042757 232 SSHNMYLMNPSLEVVRCFGVEYTAEELAEEI 262 (271)
Q Consensus 232 ~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i 262 (271)
.+..+||||..|+|+|.--|+.+++++++.+
T Consensus 247 l~GyV~L~D~s~kIRW~g~G~aTp~Eve~L~ 277 (287)
T KOG4614|consen 247 LTGYVLLLDKSGKIRWQGFGTATPEEVEQLL 277 (287)
T ss_pred eeEEEEEEccCceEEEeecCCCCHHHHHHHH
Confidence 3678999999999999988888887765543
No 211
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.68 E-value=4.3 Score=28.67 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=28.4
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
+-|++..||+ |-..+..|+++.- +...|-|+ .+-+.+++|+.-
T Consensus 5 ~lfgsn~Cpd-ca~a~eyl~rl~v--------~yd~VeIt-----~Sm~NlKrFl~l 47 (85)
T COG4545 5 KLFGSNLCPD-CAPAVEYLERLNV--------DYDFVEIT-----ESMANLKRFLHL 47 (85)
T ss_pred eeeccccCcc-hHHHHHHHHHcCC--------Cceeeehh-----hhhhhHHHHHhh
Confidence 4588999998 9887777766543 33444443 356778888653
No 212
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=74.67 E-value=17 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=17.1
Q ss_pred CCCEEEEEEe----eCCCCCChHHHHHHHHH
Q 042757 130 LGNWVLLYFG----YTSSPDVGPEQVQMMAK 156 (271)
Q Consensus 130 ~Gk~vll~F~----at~Cp~~C~~el~~l~~ 156 (271)
..+.++|+-. ++|||. |......|++
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~-C~~ak~lL~~ 39 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGF-SARAVQILKA 39 (97)
T ss_pred ccCCEEEEEccCCCCCCCch-HHHHHHHHHH
Confidence 3456777654 379997 9776666555
No 213
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=73.96 E-value=28 Score=34.07 Aligned_cols=31 Identities=16% Similarity=0.120 Sum_probs=22.9
Q ss_pred CcCCCCEEEEEEeeCCCCCChHHHHHHHHHHH
Q 042757 127 NNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAI 158 (271)
Q Consensus 127 ~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~ 158 (271)
+.++..+.|+.|+...|.. |.+....|+++.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~-~~e~~~~l~e~~ 392 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEK-SAELQSFLGEFA 392 (555)
T ss_pred HhcCCCEEEEEEECCCchh-hHHHHHHHHHHH
Confidence 4567788888999888864 877666666665
No 214
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=13 Score=37.00 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=27.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHH------HHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQV------QMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el------~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
.+||++|..+|+||-- |.... |.+.++.. =.+|.|-||-
T Consensus 42 edkPIflSIGys~CHW-ChVM~~ESf~d~eiA~~lN---------~~FV~IKVDR 86 (667)
T COG1331 42 EDKPILLSIGYSTCHW-CHVMAHESFEDPEIAAILN---------ENFVPVKVDR 86 (667)
T ss_pred hCCCEEEEeccccccc-hHHHhhhcCCCHHHHHHHH---------hCceeeeECh
Confidence 5899999999999986 97654 33333333 1357778884
No 215
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.16 E-value=55 Score=27.45 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=41.8
Q ss_pred EcCCCCeeecCcC--CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEE
Q 042757 117 IDTENRLVTENNF--LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVT 175 (271)
Q Consensus 117 ~d~~G~~v~l~~~--~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~Is 175 (271)
.|..|+.|...++ +.+.++...--..|- .|+.+...|.++..-+.+. +|..++|.
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCv-lCR~~aadLa~l~~~ld~~---Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCV-LCREEAADLASLKDLLDEL---GVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEE-EeHHHHHHHHHHHHHHHHh---CCEEEEEe
Confidence 5678999999886 345677777889997 5999999999996655543 46666665
No 216
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=72.78 E-value=11 Score=29.44 Aligned_cols=93 Identities=6% Similarity=0.011 Sum_probs=56.2
Q ss_pred CCEEEEEEeeC--CCCCChHHH-HHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 131 GNWVLLYFGYT--SSPDVGPEQ-VQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 131 Gk~vll~F~at--~Cp~~C~~e-l~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
.++-+|.|... .|.+-+..+ ...+.++.+.++.+ .+.++.+..+.+
T Consensus 20 ~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk---~i~Fv~vd~~~~---------------------------- 68 (130)
T cd02983 20 KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK---PWGWLWTEAGAQ---------------------------- 68 (130)
T ss_pred CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC---cEEEEEEeCccc----------------------------
Confidence 35777877654 354334333 45566666666532 266666554321
Q ss_pred HHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEE-ecCCCCHHHHHHHHHHHhh
Q 042757 208 RQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRC-FGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 208 ~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~-~~~~~~~~~l~~~i~~lL~ 267 (271)
..+.+.||+.. ...|.+.+++.++. .+. +.++++.+.+.+-++..++
T Consensus 69 ~~~~~~fgl~~------------~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 69 LDLEEALNIGG------------FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred HHHHHHcCCCc------------cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 12455566531 12578899999875 555 6788999988888887765
No 217
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=72.27 E-value=5.9 Score=27.13 Aligned_cols=20 Identities=0% Similarity=0.004 Sum_probs=15.6
Q ss_pred EEEeeCCCCCChHHHHHHHHH
Q 042757 136 LYFGYTSSPDVGPEQVQMMAK 156 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~ 156 (271)
..|..++||. |......|.+
T Consensus 2 ~ly~~~~Cp~-C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQ-CKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHH-HHHHHHHHHH
Confidence 4578899997 9887777764
No 218
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=72.04 E-value=19 Score=25.86 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=15.9
Q ss_pred CCCEEEEEEee----CCCCCChHHHHHHHHH
Q 042757 130 LGNWVLLYFGY----TSSPDVGPEQVQMMAK 156 (271)
Q Consensus 130 ~Gk~vll~F~a----t~Cp~~C~~el~~l~~ 156 (271)
+.++++|+--. +|||. |......|++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~-C~~ak~~L~~ 35 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGF-SRKVVQILNQ 35 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcH-HHHHHHHHHH
Confidence 45667665332 58986 8776555544
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=71.83 E-value=59 Score=31.02 Aligned_cols=61 Identities=15% Similarity=-0.011 Sum_probs=41.7
Q ss_pred CeEEEcCCCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 113 PFTLIDTENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 113 ~f~l~d~~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
.+.+.-.+|+.+++.+++|..-+|....+. . .|...+...+...++|.+. +|.+|-|..|-
T Consensus 278 rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e-~v~~al~~ae~~r~~L~~r---~VlvVPv~~~~ 338 (453)
T PLN03098 278 RLPVRLSTNRIVELVQLRDITRPVILAGTK-E-SVTLAMQKAERYRTELLKR---GVLLIPVVWGE 338 (453)
T ss_pred cceEeccCCCEEeHHHhcCcceEEEEECCH-H-HHHHHHHHhHHHHHHHHHc---CcEEEEEecCC
Confidence 344444468899999999975444333333 3 3777788888888888865 58888777763
No 220
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.12 E-value=1.9 Score=36.85 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=35.9
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
+++.++++||+.||.. |......+..+.+... +++++-+..| ..++....+.-+
T Consensus 16 ~~~~~~~~f~a~wa~~-~~q~~~v~~~~~~~~~-----~~~~~k~~a~---~~~eis~~~~v~ 69 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVV-QKQMDQVFDHLAEYFK-----NAQFLKLEAE---EFPEISNLIAVE 69 (227)
T ss_pred ccchhhhhhhhhhhhh-hhhHHHHHHHHHHhhh-----hheeeeehhh---hhhHHHHHHHHh
Confidence 7889999999999986 9887777777776662 3555444433 234444444433
No 221
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=69.14 E-value=14 Score=29.42 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=15.7
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhhhhh
Q 042757 60 SRSWSTYVIPAGGLLGLAGIATFVHYND 87 (271)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (271)
+++...++++++++++++|.++|++...
T Consensus 2 kkkl~~i~~i~l~~l~~~g~~~~~~~~~ 29 (142)
T PRK07718 2 KNKLIKIMLIILIVIALIGTAALVLVMG 29 (142)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455555554444666666666666543
No 222
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=67.81 E-value=9 Score=32.87 Aligned_cols=44 Identities=16% Similarity=0.035 Sum_probs=33.2
Q ss_pred CCCeeecCcCCC--CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhc
Q 042757 120 ENRLVTENNFLG--NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSK 164 (271)
Q Consensus 120 ~G~~v~l~~~~G--k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~ 164 (271)
+++.+..+.-++ +.-||-|+++|.|. |....|.+.++..+|.-.
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~-Cv~~spvfaeLS~kyn~~ 176 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPK-CVRFSPVFAELSIKYNNN 176 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChh-hcccccccHHHHHHhCCC
Confidence 445444333333 45689999999998 999999999999998754
No 223
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=67.67 E-value=24 Score=24.95 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=14.5
Q ss_pred EEEEeeCCCCCChHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMA 155 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~ 155 (271)
+..|.-++||. |...-..|.
T Consensus 3 v~iyt~~~CPy-C~~ak~~L~ 22 (80)
T COG0695 3 VTIYTKPGCPY-CKRAKRLLD 22 (80)
T ss_pred EEEEECCCCch-HHHHHHHHH
Confidence 44567788997 987666665
No 224
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=66.08 E-value=13 Score=25.98 Aligned_cols=21 Identities=10% Similarity=0.132 Sum_probs=16.1
Q ss_pred EEEEEeeCCCCCChHHHHHHHH
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMA 155 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~ 155 (271)
-++.|..+|||. |......|.
T Consensus 9 ~V~ly~~~~Cp~-C~~ak~~L~ 29 (79)
T TIGR02190 9 SVVVFTKPGCPF-CAKAKATLK 29 (79)
T ss_pred CEEEEECCCCHh-HHHHHHHHH
Confidence 355688999997 988776665
No 225
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=65.56 E-value=15 Score=29.64 Aligned_cols=31 Identities=16% Similarity=0.086 Sum_probs=26.2
Q ss_pred ceeEEEEcCCCeEEEEecCCCCHHHHHHHHH
Q 042757 233 SHNMYLMNPSLEVVRCFGVEYTAEELAEEIS 263 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~ 263 (271)
+..++++|++|++.+...+.++..++.+.|.
T Consensus 147 ~SaivVlDk~G~VkfvkeGaLt~aevQ~Vi~ 177 (184)
T COG3054 147 SSAVVVLDKDGRVKFVKEGALTQAEVQQVID 177 (184)
T ss_pred cceEEEEcCCCcEEEEecCCccHHHHHHHHH
Confidence 4677999999999999999999888766554
No 226
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=64.66 E-value=34 Score=32.23 Aligned_cols=39 Identities=26% Similarity=0.210 Sum_probs=32.9
Q ss_pred ceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHh
Q 042757 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEM 266 (271)
Q Consensus 228 y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL 266 (271)
|-+...|.+|+||..|.-++...+-...++|...|.+.+
T Consensus 73 Yp~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 73 YPYVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVW 111 (506)
T ss_pred cccccccceeeecCCCceeEEeeccccHHHHHHHHHHHH
Confidence 445568999999999999999988888999988887643
No 227
>PRK10853 putative reductase; Provisional
Probab=63.95 E-value=20 Score=27.52 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=33.2
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
+..|+.+.|.. |+..+..|.+- ++.+.++.+--+.-+.+.++++++++|
T Consensus 2 i~iy~~~~C~t-~rkA~~~L~~~----------~i~~~~~d~~k~p~s~~eL~~~l~~~g 50 (118)
T PRK10853 2 VTLYGIKNCDT-IKKARRWLEAQ----------GIDYRFHDYRVDGLDSELLQGFIDELG 50 (118)
T ss_pred EEEEcCCCCHH-HHHHHHHHHHc----------CCCcEEeehccCCcCHHHHHHHHHHcC
Confidence 34688899986 98876666542 344445554333458899999998876
No 228
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=63.85 E-value=29 Score=23.46 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=14.8
Q ss_pred EEEEeeCCCCCChHHHHHHHH
Q 042757 135 LLYFGYTSSPDVGPEQVQMMA 155 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~ 155 (271)
++-|..+|||. |......|+
T Consensus 3 v~lys~~~Cp~-C~~ak~~L~ 22 (72)
T cd03029 3 VSLFTKPGCPF-CARAKAALQ 22 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHH
Confidence 44577899997 988766665
No 229
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=63.04 E-value=63 Score=24.33 Aligned_cols=30 Identities=10% Similarity=0.066 Sum_probs=18.1
Q ss_pred ceeEEEEcCCCeEEEEecCCC-CHHHHHHHHH
Q 042757 233 SHNMYLMNPSLEVVRCFGVEY-TAEELAEEIS 263 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~~~~-~~~~l~~~i~ 263 (271)
.|.+.++|.++ -.+...++. +.+.|.+-++
T Consensus 78 ~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~ 108 (111)
T cd03073 78 KPVVAIRTAKG-KKYVMEEEFSDVDALEEFLE 108 (111)
T ss_pred CCEEEEEeCCC-CccCCCcccCCHHHHHHHHH
Confidence 57888888766 333334556 6666655444
No 230
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=62.97 E-value=23 Score=26.86 Aligned_cols=49 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
..|+.+.|+. |+..+..|.+- ++.+.++.+--+.-+.+.++++++..+.
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~----------~i~~~~~di~~~p~t~~el~~~l~~~g~ 50 (114)
T TIGR00014 2 TIYHNPRCSK-SRNTLALLEDK----------GIEPEVVKYLKNPPTKSELEAIFAKLGL 50 (114)
T ss_pred EEEECCCCHH-HHHHHHHHHHC----------CCCeEEEeccCCCcCHHHHHHHHHHcCC
Confidence 3578899986 98876666552 3444445543344588999999998764
No 231
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=62.81 E-value=22 Score=26.80 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=32.5
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
..|+.+.|.. |+..+..|++- ++.+.++.+--+.-+.+.+.++++..+.
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~----------~i~~~~~di~~~~~t~~el~~~l~~~~~ 50 (112)
T cd03034 2 TIYHNPRCSK-SRNALALLEEA----------GIEPEIVEYLKTPPTAAELRELLAKLGI 50 (112)
T ss_pred EEEECCCCHH-HHHHHHHHHHC----------CCCeEEEecccCCcCHHHHHHHHHHcCC
Confidence 4578899986 98866555442 3444445443334588999999998874
No 232
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=62.13 E-value=27 Score=26.24 Aligned_cols=49 Identities=24% Similarity=0.348 Sum_probs=28.0
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
.+++++ |.-+|||. |.. +..+...+ ++....|.+|...+. ..+++++.+
T Consensus 13 ~~~VVi-fSKs~C~~-c~~----~k~ll~~~------~v~~~vvELD~~~~g-~eiq~~l~~ 61 (104)
T KOG1752|consen 13 ENPVVI-FSKSSCPY-CHR----AKELLSDL------GVNPKVVELDEDEDG-SEIQKALKK 61 (104)
T ss_pred cCCEEE-EECCcCch-HHH----HHHHHHhC------CCCCEEEEccCCCCc-HHHHHHHHH
Confidence 345555 77799997 977 33333332 355566777765433 355555443
No 233
>PRK10329 glutaredoxin-like protein; Provisional
Probab=61.90 E-value=16 Score=25.81 Aligned_cols=32 Identities=6% Similarity=0.042 Sum_probs=20.7
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
+.-|..+|||. |......|.+ .+|.+-.|.+|
T Consensus 3 v~lYt~~~Cp~-C~~ak~~L~~----------~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQ-CHATKRAMES----------RGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHh-HHHHHHHHHH----------CCCceEEEECC
Confidence 44578899997 9876666633 24555556655
No 234
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=61.75 E-value=27 Score=26.53 Aligned_cols=48 Identities=8% Similarity=0.193 Sum_probs=30.9
Q ss_pred EEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 136 LYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 136 l~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
..|..+.|+. |+.....|.+ .+ ..++++-+.-+ .-+.+.++++++..+
T Consensus 3 ~iy~~p~C~~-crkA~~~L~~-------~g-i~~~~~d~~~~--p~s~~eL~~~l~~~g 50 (113)
T cd03033 3 IFYEKPGCAN-NARQKALLEA-------AG-HEVEVRDLLTE--PWTAETLRPFFGDLP 50 (113)
T ss_pred EEEECCCCHH-HHHHHHHHHH-------cC-CCcEEeehhcC--CCCHHHHHHHHHHcC
Confidence 4578899987 9876655443 21 23444444444 358899999998765
No 235
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=59.87 E-value=34 Score=26.61 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=33.5
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
++..|+.+.|.. |+..+..|++- ++.+-++.+--+.-+.+.++.|++..+
T Consensus 2 ~i~iY~~p~Cst-~RKA~~~L~~~----------gi~~~~~d~~~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 2 TIIFYEKPGCAN-NARQKAALKAS----------GHDVEVQDILKEPWHADTLRPYFGNKP 51 (126)
T ss_pred eEEEEeCCCCHH-HHHHHHHHHHC----------CCCcEEEeccCCCcCHHHHHHHHHHcC
Confidence 355688899986 98866666542 344445554333458899999998864
No 236
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=59.76 E-value=31 Score=26.46 Aligned_cols=55 Identities=11% Similarity=0.194 Sum_probs=35.8
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeee
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l 200 (271)
+-.|+.+.|.. |+..+..|++- + ..++++-+.-+| -+.+.+.++++..+.+|..+
T Consensus 3 itiy~~p~C~t-~rka~~~L~~~-------g-i~~~~~~y~~~~--~s~~eL~~~l~~~g~~~~~l 57 (117)
T COG1393 3 ITIYGNPNCST-CRKALAWLEEH-------G-IEYTFIDYLKTP--PSREELKKILSKLGDGVEEL 57 (117)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc-------C-CCcEEEEeecCC--CCHHHHHHHHHHcCccHHHH
Confidence 44588999986 98776666542 1 234444444444 48899999999988655433
No 237
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=56.71 E-value=51 Score=26.94 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=9.9
Q ss_pred EEEcCCCeEEEE
Q 042757 237 YLMNPSLEVVRC 248 (271)
Q Consensus 237 ~lID~~G~iv~~ 248 (271)
=+++.+|++|.+
T Consensus 156 NfLNaEgR~Vaa 167 (196)
T KOG3363|consen 156 NFLNAEGRYVAA 167 (196)
T ss_pred hhccccccEEEE
Confidence 477899999977
No 238
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=56.69 E-value=31 Score=26.00 Aligned_cols=35 Identities=9% Similarity=-0.084 Sum_probs=21.2
Q ss_pred ceeEEEEcCCCeEEEE-ecCCCCHHHHHHHHHHHhh
Q 042757 233 SHNMYLMNPSLEVVRC-FGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~-~~~~~~~~~l~~~i~~lL~ 267 (271)
.|.+.+++-++.-.+. +...++++.+.+-++..++
T Consensus 74 ~P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 74 LPVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred CCEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 5677777765522333 3456777777776666554
No 239
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=56.44 E-value=45 Score=24.34 Aligned_cols=18 Identities=11% Similarity=0.287 Sum_probs=14.7
Q ss_pred eEEEEcCCCeEEEEecCC
Q 042757 235 NMYLMNPSLEVVRCFGVE 252 (271)
Q Consensus 235 ~~~lID~~G~iv~~~~~~ 252 (271)
.+|+.||+|+.+..+.+.
T Consensus 93 ~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 93 GVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEEECCCCCEEEEecCC
Confidence 469999999999887553
No 240
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=55.52 E-value=22 Score=25.05 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=24.3
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
|+.|.-..|+ .|......|.++... ..+.+-.|.++
T Consensus 2 l~l~~k~~C~-LC~~a~~~L~~~~~~------~~~~l~~vDI~ 37 (81)
T PF05768_consen 2 LTLYTKPGCH-LCDEAKEILEEVAAE------FPFELEEVDID 37 (81)
T ss_dssp EEEEE-SSSH-HHHHHHHHHHHCCTT------STCEEEEEETT
T ss_pred EEEEcCCCCC-hHHHHHHHHHHHHhh------cCceEEEEECC
Confidence 6778889998 498877777664432 24667777776
No 241
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=55.06 E-value=12 Score=29.25 Aligned_cols=10 Identities=20% Similarity=0.474 Sum_probs=4.4
Q ss_pred chhhHHHHHH
Q 042757 62 SWSTYVIPAG 71 (271)
Q Consensus 62 ~~~~~~~~~~ 71 (271)
||++++++++
T Consensus 1 RW~l~~iii~ 10 (130)
T PF12273_consen 1 RWVLFAIIIV 10 (130)
T ss_pred CeeeHHHHHH
Confidence 3554444333
No 242
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=53.47 E-value=16 Score=27.80 Aligned_cols=24 Identities=8% Similarity=0.055 Sum_probs=12.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhh
Q 042757 61 RSWSTYVIPAGGLLGLAGIATFVHY 85 (271)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (271)
+++.++++.++ ++++++++.|+.+
T Consensus 3 rr~~~~~~~v~-~vv~~~~~~w~~~ 26 (112)
T PF14155_consen 3 RRKLVIAGAVL-VVVAGAVVAWFGY 26 (112)
T ss_pred cceeEehHHHH-HHHHHHHHhHhhh
Confidence 34444444434 5555555566555
No 243
>PRK12569 hypothetical protein; Provisional
Probab=52.83 E-value=79 Score=27.62 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=50.3
Q ss_pred HHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe-cCCCCHHHHHHHH
Q 042757 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF-GVEYTAEELAEEI 262 (271)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~-~~~~~~~~l~~~i 262 (271)
+.+-+-++.+++.++.+......+.+.+++.|+.+..+--....| +++|.++-+- .+..+++++.+..
T Consensus 130 ~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~Y-----------~~dG~Lv~R~~~gAvd~~~~~~~~ 198 (245)
T PRK12569 130 RLLVEALARLDPLLILYCMDGSATERAARELGQPVVREFYADRDY-----------DDSGSIVFTRRVGALDPQQVAAKV 198 (245)
T ss_pred HHHHHHHHHhCCCcEEEecCCcHHHHHHHHcCCCeEEEEEecCcc-----------CCCCCEecCCCCCCCCHHHHHHHH
Confidence 333445566788887777666778899999998776543223333 4688888665 3334888888888
Q ss_pred HHHhhh
Q 042757 263 SKEMKK 268 (271)
Q Consensus 263 ~~lL~~ 268 (271)
.+++++
T Consensus 199 ~~m~~~ 204 (245)
T PRK12569 199 LRACRE 204 (245)
T ss_pred HHHHHc
Confidence 887754
No 244
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=52.43 E-value=1.4e+02 Score=24.85 Aligned_cols=50 Identities=12% Similarity=0.138 Sum_probs=32.3
Q ss_pred CCCCEEEEEEeeCCCCCC--hHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCC
Q 042757 129 FLGNWVLLYFGYTSSPDV--GPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQ 179 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~--C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~ 179 (271)
++.+.++|.++...+... -......+.++.+.+++.. .+..++.+++=|.
T Consensus 88 ~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~~-P~~~Iil~~~~p~ 139 (214)
T cd01820 88 VNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREKL-PNAKILLLGLLPR 139 (214)
T ss_pred CCCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHC-CCCeEEEEeccCC
Confidence 456778888887776421 2234467788888777653 3567777776553
No 245
>PHA03075 glutaredoxin-like protein; Provisional
Probab=51.85 E-value=1.1e+02 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=24.0
Q ss_pred CEEEEEEeeCCCCCChHHHHHHHHHHHHHHh
Q 042757 132 NWVLLYFGYTSSPDVGPEQVQMMAKAIDILD 162 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el~~l~~l~~~l~ 162 (271)
|.+||-|+=+-|+ +|...-..|.++.++|.
T Consensus 2 K~tLILfGKP~C~-vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCS-VCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccH-HHHHHHHHHHHhhcccc
Confidence 5688999999998 69998888866666554
No 246
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=50.07 E-value=54 Score=26.50 Aligned_cols=17 Identities=6% Similarity=-0.162 Sum_probs=7.2
Q ss_pred Ceeec-CcC-CCCEEEEEE
Q 042757 122 RLVTE-NNF-LGNWVLLYF 138 (271)
Q Consensus 122 ~~v~l-~~~-~Gk~vll~F 138 (271)
=.+++ ++- ..+++-+.+
T Consensus 67 f~VNL~~~~~~~rylkv~i 85 (162)
T PRK07021 67 FTVNLQPDDDADRVLYVGL 85 (162)
T ss_pred EEEEcCCCCCCceEEEEEE
Confidence 34555 222 245554443
No 247
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=49.91 E-value=75 Score=23.45 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=31.7
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMA 211 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (271)
++.+|.|+-|-..++.+.+..+.++++.++..+.++.++++..+
T Consensus 32 kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~ 75 (99)
T PRK01018 32 KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLC 75 (99)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHh
Confidence 67888888886666777778888888877766666666655443
No 248
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=48.78 E-value=96 Score=28.00 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=21.6
Q ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHcCCceee
Q 042757 167 LKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVG 199 (271)
Q Consensus 167 ~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~ 199 (271)
..++++.|.-....+|.+.++++.++.+..+..
T Consensus 37 ~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~ 69 (325)
T PRK10714 37 KEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVA 69 (325)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEE
Confidence 367887776544556788888877665555443
No 249
>PRK05406 LamB/YcsF family protein; Provisional
Probab=48.58 E-value=85 Score=27.46 Aligned_cols=74 Identities=9% Similarity=0.013 Sum_probs=50.0
Q ss_pred HHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe-cCC--CCHHHHHH
Q 042757 184 AHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF-GVE--YTAEELAE 260 (271)
Q Consensus 184 ~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~-~~~--~~~~~l~~ 260 (271)
+.+-+.++.++++...+......+.++++++|+.+..+--....| +++|.++-+- .+. .+++++.+
T Consensus 127 ~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~Y-----------~~dG~Lv~R~~~gAvi~d~~~v~~ 195 (246)
T PRK05406 127 DAVAEAVAAVDPSLILVGLAGSELIRAAEEAGLRTASEVFADRAY-----------TADGTLVPRSQPGAVIHDEEEAAA 195 (246)
T ss_pred HHHHHHHHHhCCCcEEEecCChHHHHHHHHcCCcEEEEEEecCCc-----------CCCCCCcCCCCCCCccCCHHHHHH
Confidence 333445566788877777666778999999998776543223333 4678887554 333 58888888
Q ss_pred HHHHHhhh
Q 042757 261 EISKEMKK 268 (271)
Q Consensus 261 ~i~~lL~~ 268 (271)
.+.+++++
T Consensus 196 ~~~~~~~~ 203 (246)
T PRK05406 196 QVLQMVQE 203 (246)
T ss_pred HHHHHHHc
Confidence 88887754
No 250
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.61 E-value=15 Score=28.65 Aligned_cols=21 Identities=10% Similarity=-0.013 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 042757 65 TYVIPAGGLLGLAGIATFVHY 85 (271)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~ 85 (271)
.|+++++++++++++++++++
T Consensus 1 RW~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHH
Confidence 377777744444444443333
No 251
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=44.14 E-value=35 Score=24.19 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=23.0
Q ss_pred cceeEEEEcCCCeEEEEec-CCCCHHHHHHHHHHHh
Q 042757 232 SSHNMYLMNPSLEVVRCFG-VEYTAEELAEEISKEM 266 (271)
Q Consensus 232 ~~p~~~lID~~G~iv~~~~-~~~~~~~l~~~i~~lL 266 (271)
+.|.+.|.|.+|+.+.... ..++.+.+.+-|.+.+
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 5789999999999988874 5788888877776543
No 252
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=43.84 E-value=53 Score=24.47 Aligned_cols=52 Identities=13% Similarity=0.191 Sum_probs=30.1
Q ss_pred EeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeee
Q 042757 138 FGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 138 F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l 200 (271)
|+.+.|.. |+..+..|.+ .++.+-++.+--..-+.+.+.++++..+.++.-+
T Consensus 1 Y~~~~C~t-~rka~~~L~~----------~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~l 52 (110)
T PF03960_consen 1 YGNPNCST-CRKALKWLEE----------NGIEYEFIDYKKEPLSREELRELLSKLGNGPDDL 52 (110)
T ss_dssp EE-TT-HH-HHHHHHHHHH----------TT--EEEEETTTS---HHHHHHHHHHHTSSGGGG
T ss_pred CcCCCCHH-HHHHHHHHHH----------cCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHH
Confidence 45678875 8776665554 2456666776444458899999999988544333
No 253
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=43.68 E-value=1.1e+02 Score=23.12 Aligned_cols=44 Identities=7% Similarity=0.047 Sum_probs=29.8
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMA 211 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (271)
++..|.|+-|-...+.+.+..+++.++.++..+.++.+++.+.+
T Consensus 41 kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~ 84 (108)
T PTZ00106 41 KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTAC 84 (108)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHh
Confidence 57777888776556667777777777777665556666655444
No 254
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=43.44 E-value=51 Score=30.58 Aligned_cols=10 Identities=10% Similarity=0.006 Sum_probs=4.1
Q ss_pred HHHHHHHHhh
Q 042757 75 GLAGIATFVH 84 (271)
Q Consensus 75 ~~~~~~~~~~ 84 (271)
+++|++.|++
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 255
>PRK10824 glutaredoxin-4; Provisional
Probab=42.47 E-value=1.1e+02 Score=23.38 Aligned_cols=27 Identities=26% Similarity=0.250 Sum_probs=17.8
Q ss_pred CCCEEEEEEee----CCCCCChHHHHHHHHHH
Q 042757 130 LGNWVLLYFGY----TSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 130 ~Gk~vll~F~a----t~Cp~~C~~el~~l~~l 157 (271)
..+.|+|+--. +|||. |......|.+.
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGF-SAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCch-HHHHHHHHHHc
Confidence 44567775443 49997 98877666554
No 256
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.39 E-value=1.7e+02 Score=23.01 Aligned_cols=77 Identities=14% Similarity=0.134 Sum_probs=47.1
Q ss_pred CCCCEEEEEEeeCCCCCCh--HHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC----CCHHHHHHHHHHcCCceeeecC
Q 042757 129 FLGNWVLLYFGYTSSPDVG--PEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR----DTPAHLRAYLKEFNSRIVGLTG 202 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C--~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~----Dt~~~l~~~~~~~~~~~~~l~~ 202 (271)
.+.++++|.++...|-.-. ......+.++.+.+.+.. .+..++.++.=|.. ...+.+.+|
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~-~~~~vi~~~~~p~~~~~~~~~~~~~~~------------- 112 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHF-PNIKIVVQSILPVGELKSIPNEQIEEL------------- 112 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHC-CCCeEEEEecCCcCccCcCCHHHHHHH-------------
Confidence 4567888888888874322 344577777777777643 35777777764432 223333333
Q ss_pred CHHHHHHHHHHcCceeee
Q 042757 203 PVGAIRQMAQEYRVFFKK 220 (271)
Q Consensus 203 ~~~~~~~~~~~~gv~~~~ 220 (271)
.+.++++++++++.+..
T Consensus 113 -n~~l~~~a~~~~~~~id 129 (169)
T cd01828 113 -NRQLAQLAQQEGVTFLD 129 (169)
T ss_pred -HHHHHHHHHHCCCEEEe
Confidence 23456778888877653
No 257
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=42.36 E-value=30 Score=24.44 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=22.4
Q ss_pred EEEcCCCeEEEEe-----cCCCCHHHHHHHHHHHhhh
Q 042757 237 YLMNPSLEVVRCF-----GVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 237 ~lID~~G~iv~~~-----~~~~~~~~l~~~i~~lL~~ 268 (271)
|.||++|.|..-+ ....+.+++.+.|+..+++
T Consensus 33 ~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 69 (82)
T PF02563_consen 33 YTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQK 69 (82)
T ss_dssp EE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTT
T ss_pred eEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHH
Confidence 8999999998643 4578899999999988875
No 258
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=41.95 E-value=68 Score=23.16 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred cceeEEEEcCCCeEEEEe-cCCCC-HHHHHHHHHHHhhh
Q 042757 232 SSHNMYLMNPSLEVVRCF-GVEYT-AEELAEEISKEMKK 268 (271)
Q Consensus 232 ~~p~~~lID~~G~iv~~~-~~~~~-~~~l~~~i~~lL~~ 268 (271)
+.|.++++|++|+.+-.. ++..- ..++...|.++|..
T Consensus 37 ~DPaVvvvde~g~~vIplL~GH~GGan~lA~~iA~~lga 75 (84)
T PF11760_consen 37 TDPAVVVVDEDGRFVIPLLGGHRGGANELARQIAELLGA 75 (84)
T ss_dssp T--EEEEE-TT--EEEEEE-TTTT-HHHHHHHHHHHTT-
T ss_pred CCCCEEEEeCCCCEEEEeccCCcchHHHHHHHHHHHhCC
Confidence 368899999999988665 55555 68899999888764
No 259
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=41.38 E-value=73 Score=27.80 Aligned_cols=75 Identities=15% Similarity=0.084 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe-cCC--CCHHHHH
Q 042757 183 PAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF-GVE--YTAEELA 259 (271)
Q Consensus 183 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~-~~~--~~~~~l~ 259 (271)
.+.+-+.++.+++++..+......+.+.++++|+.+..+.-....| +++|.++-+- .+. .+++++.
T Consensus 124 A~~i~~ai~~~~~~l~l~~~ags~~~~~A~~~Gl~~~~E~FADR~Y-----------~~dG~Lv~R~~~gAvi~d~~~~~ 192 (242)
T PF03746_consen 124 ARAIAEAIKAFDPDLPLYGLAGSELEKAAKELGLPVVFEAFADRAY-----------DDDGSLVPRSQPGAVIHDPEEAA 192 (242)
T ss_dssp HHHHHHHHHHH-TT-EEEEETTSHHHHHHHHCT--EEEEEETTBEB------------TTSSBEETTSTTCB---HHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEcCCcHHHHHHHHCCCcEEEEEEEcccC-----------cCCCCEeecCCCCCccCCHHHHH
Confidence 4444566677888877666556677889999999876554233333 3678887654 333 3688888
Q ss_pred HHHHHHhhh
Q 042757 260 EEISKEMKK 268 (271)
Q Consensus 260 ~~i~~lL~~ 268 (271)
+.+.+++++
T Consensus 193 ~q~~~~~~~ 201 (242)
T PF03746_consen 193 EQVLQMVKE 201 (242)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 888887764
No 260
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=41.17 E-value=63 Score=23.99 Aligned_cols=25 Identities=12% Similarity=0.482 Sum_probs=16.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhhh
Q 042757 61 RSWSTYVIPAGGLLGLAGIATFVHY 85 (271)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (271)
.+|...+|.++.+++.+|+++-+++
T Consensus 16 ~PWeIfLItLasVvvavGl~aGLfF 40 (106)
T PF14654_consen 16 KPWEIFLITLASVVVAVGLFAGLFF 40 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5787777777767777776654443
No 261
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=41.01 E-value=4.3 Score=23.84 Aligned_cols=29 Identities=3% Similarity=0.221 Sum_probs=21.2
Q ss_pred cCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 240 NPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 240 D~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
||+|+|+..|..+..+..-.+.+-++|..
T Consensus 4 dpegqimk~yaadpeyrkh~~v~yqil~~ 32 (38)
T PF02526_consen 4 DPEGQIMKAYAADPEYRKHLNVLYQILTN 32 (38)
T ss_pred CchhHHHHHHhcCHHHHHHHHHHHHHHcc
Confidence 78899988887766666666666666653
No 262
>PF02484 Rhabdo_NV: Rhabdovirus Non-virion protein; InterPro: IPR003490 Infectious hematopoietic necrosis virus (IHNV) is a member of the family Rhabdoviridae. The non-virion protein (NV) is coded for by one of the six genes of the IHNV genome [], but is absent in vesiculovirus-like rhabdovirus [].
Probab=40.45 E-value=37 Score=24.78 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=23.7
Q ss_pred EEEcCCCeEEEEecCCCCHHHHHHHHHHHhh
Q 042757 237 YLMNPSLEVVRCFGVEYTAEELAEEISKEMK 267 (271)
Q Consensus 237 ~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~ 267 (271)
||.| +|+|+|+-.++..-..+...+..++.
T Consensus 28 flfd-dg~~vw~e~~d~~w~rl~~vv~al~s 57 (111)
T PF02484_consen 28 FLFD-DGDIVWSEDDDETWNRLCDVVNALIS 57 (111)
T ss_pred eEec-CCcEEEecCChHHHHHHHHHHHHHHh
Confidence 8888 99999998877777777777766654
No 263
>PTZ00062 glutaredoxin; Provisional
Probab=40.43 E-value=1.1e+02 Score=25.93 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=15.5
Q ss_pred CCCEEEEEEee----CCCCCChHHHHHHHHH
Q 042757 130 LGNWVLLYFGY----TSSPDVGPEQVQMMAK 156 (271)
Q Consensus 130 ~Gk~vll~F~a----t~Cp~~C~~el~~l~~ 156 (271)
..++++|+--. ++||. |......|++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~-C~~~k~~L~~ 140 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRF-SNAVVNMLNS 140 (204)
T ss_pred hcCCEEEEEccCCCCCCChh-HHHHHHHHHH
Confidence 45677776543 47775 7665555553
No 264
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=40.14 E-value=32 Score=26.97 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=42.5
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
.|-++ |+|--| .|+.++..|+++...+.. .+.|+-.+..+.+=.+.+|-... ..=.-+...+.+
T Consensus 49 HGaV~---i~Y~p~--~~~~~v~~L~~l~~~~~~-------~~visP~~~~~~pialtaWg~~l----~~~~~d~~~i~~ 112 (130)
T PF11303_consen 49 HGAVW---ITYDPC--LPPDQVAKLKALAKSCLP-------YVVISPYPGLDRPIALTAWGRQL----KLDSADDPRIKQ 112 (130)
T ss_pred cCcEE---EEECCC--CCHHHHHHHHHHHhccCC-------cEEEecCCCCCCCEEEeecCCEe----ecCcCCHHHHHH
Confidence 45544 345555 599999999999887542 24555566556655555553332 222336778888
Q ss_pred HHHHc
Q 042757 210 MAQEY 214 (271)
Q Consensus 210 ~~~~~ 214 (271)
|.++|
T Consensus 113 Fi~~~ 117 (130)
T PF11303_consen 113 FIRKY 117 (130)
T ss_pred HHHHH
Confidence 88887
No 265
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=39.76 E-value=68 Score=23.45 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=12.4
Q ss_pred eeEEEEcCCCeEEEE
Q 042757 234 HNMYLMNPSLEVVRC 248 (271)
Q Consensus 234 p~~~lID~~G~iv~~ 248 (271)
..+|+.||+|+++..
T Consensus 108 ~~~~~~DPdG~~iE~ 122 (125)
T cd08357 108 ETFFLKDPSGNALEF 122 (125)
T ss_pred eEEEEECCCCCEEEE
Confidence 457999999998864
No 266
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=39.62 E-value=39 Score=26.40 Aligned_cols=31 Identities=29% Similarity=0.336 Sum_probs=22.8
Q ss_pred ceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHH
Q 042757 228 YLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 228 y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~ 264 (271)
++|.++|+++| +|+.+ .+..+.+++.+.|++
T Consensus 132 ~~i~~tPt~~i---nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 132 LGITGTPTFFI---NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HT-SSSSEEEE---TTCEE---ETTTSHHHHHHHHHH
T ss_pred cCCccccEEEE---CCEEe---CCCCCHHHHHHHHcC
Confidence 45667898777 78885 667888988888764
No 267
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=39.48 E-value=50 Score=22.59 Aligned_cols=43 Identities=9% Similarity=0.006 Sum_probs=25.7
Q ss_pred CCCeeecCcCCCCEEEEEEeeCCCCCChHHHHHHHH-HHHHHHhhc
Q 042757 120 ENRLVTENNFLGNWVLLYFGYTSSPDVGPEQVQMMA-KAIDILDSK 164 (271)
Q Consensus 120 ~G~~v~l~~~~Gk~vll~F~at~Cp~~C~~el~~l~-~l~~~l~~~ 164 (271)
+|..+.+-++++..+.|.|. ..|.. |+.....|. .+.+.+.+.
T Consensus 15 dGGdv~lv~v~~~~V~V~l~-GaC~g-C~~s~~Tl~~~Ie~~L~~~ 58 (68)
T PF01106_consen 15 DGGDVELVDVDDGVVYVRLT-GACSG-CPSSDMTLKQGIEQALREA 58 (68)
T ss_dssp TTEEEEEEEEETTEEEEEEE-SSCCS-SCCHHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCEEEEEEE-eCCCC-CCCHHHHHHHHHHHHHHHH
Confidence 56667777776667777774 45654 766666663 333445443
No 268
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=39.06 E-value=1.4e+02 Score=22.25 Aligned_cols=40 Identities=13% Similarity=0.241 Sum_probs=29.2
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
++.+|.++-|-..++.+.+..+++.++..+..+ ++.+++.
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~~eLg 72 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSKEELG 72 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCHHHHH
Confidence 688888998887788888888888777776555 5555443
No 269
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=38.98 E-value=1.2e+02 Score=25.72 Aligned_cols=51 Identities=14% Similarity=0.117 Sum_probs=35.6
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCc
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSR 196 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~ 196 (271)
.|..|.-..|++ |...+..+.. . +..+.+.+|.- +.+.+.++.|+..++.+
T Consensus 111 rlalFvkd~C~~-C~~~~~~l~a------~--~~~~Diylvgs---~~dD~~Ir~WA~~~~Id 161 (200)
T TIGR03759 111 RLALFVKDDCVA-CDARVQRLLA------D--NAPLDLYLVGS---QGDDERIRQWANRHQID 161 (200)
T ss_pred eEEEEeCCCChH-HHHHHHHHhc------C--CCceeEEEecC---CCCHHHHHHHHHHcCCC
Confidence 455566689986 9887766632 1 24688888773 34668899999998753
No 270
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=38.66 E-value=87 Score=24.91 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=19.7
Q ss_pred cceeEEEEcCCCeEE-EEecCCCCHHHHHHHHH
Q 042757 232 SSHNMYLMNPSLEVV-RCFGVEYTAEELAEEIS 263 (271)
Q Consensus 232 ~~p~~~lID~~G~iv-~~~~~~~~~~~l~~~i~ 263 (271)
+.|.++++|.+..-. +...+.++.+.+.+-|+
T Consensus 151 ~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 151 DLPALVIFDSNKGKYYYLPEGEITPESIEKFLN 183 (184)
T ss_dssp SSSEEEEEETTTSEEEE--SSCGCHHHHHHHHH
T ss_pred cCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhc
Confidence 478899999655432 33356777777665543
No 271
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=38.36 E-value=70 Score=19.59 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=12.2
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhh
Q 042757 60 SRSWSTYVIPAGGLLGLAGIATFVH 84 (271)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (271)
.+|+-+|++..++-+++++++..++
T Consensus 5 tGRIPLWlVgtv~G~~vi~lvglFf 29 (40)
T PF01788_consen 5 TGRIPLWLVGTVAGIAVIGLVGLFF 29 (40)
T ss_dssp TTSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccchHHHHHHHHHHHHHHHHhe
Confidence 3667667665544444444443333
No 272
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=37.98 E-value=52 Score=22.04 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=19.0
Q ss_pred EEEEcCCCeEEEEecCC-CCHHHHHHHHHHHhhh
Q 042757 236 MYLMNPSLEVVRCFGVE-YTAEELAEEISKEMKK 268 (271)
Q Consensus 236 ~~lID~~G~iv~~~~~~-~~~~~l~~~i~~lL~~ 268 (271)
-|.||++|++....-.. .....+.+...+.++.
T Consensus 15 ~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~ 48 (74)
T TIGR01352 15 RFTVDADGRVTSVSVLKSSGDEALDRAALEAVRK 48 (74)
T ss_pred EEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHh
Confidence 49999999998664211 1123444444444444
No 273
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=37.28 E-value=2.2e+02 Score=23.00 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred CCeEEEc-CCCCeeecCcC---CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHh
Q 042757 112 GPFTLID-TENRLVTENNF---LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILD 162 (271)
Q Consensus 112 p~f~l~d-~~G~~v~l~~~---~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~ 162 (271)
|++.+.. .||+++.+.+. .|+|-|+.|...-- ++.....|.++.+.+.
T Consensus 5 ~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~---~~~~~~~l~~~~~~L~ 56 (167)
T cd02979 5 PSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIA---PAQQKSRLTQLCDALD 56 (167)
T ss_pred CCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCC---chhHHHHHHHHHHHHc
Confidence 6666665 58888888763 69999998866443 3455667777776664
No 274
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=37.02 E-value=1.9e+02 Score=23.49 Aligned_cols=28 Identities=14% Similarity=0.041 Sum_probs=19.3
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCC
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~ 195 (271)
.++++.|.-....++.+.+++|.++++.
T Consensus 30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~ 57 (211)
T cd04188 30 SYEIIVVDDGSKDGTAEVARKLARKNPA 57 (211)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhCCC
Confidence 5787777655555677888888776653
No 275
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=36.41 E-value=1.6e+02 Score=21.03 Aligned_cols=45 Identities=11% Similarity=0.309 Sum_probs=28.3
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCc
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRV 216 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv 216 (271)
++..|+|.-|-..++.+.+..+.+.++..+. ..++..+ +.+..|.
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~-~~~t~~e---LG~A~G~ 68 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIV-YIDTMKE---LGVMCGI 68 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEE-EeCCHHH---HHHHHCC
Confidence 6778888877666666677777777777663 3344444 3444443
No 276
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=36.37 E-value=60 Score=27.17 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=5.7
Q ss_pred CCeEEEcCC
Q 042757 112 GPFTLIDTE 120 (271)
Q Consensus 112 p~f~l~d~~ 120 (271)
|+|...+..
T Consensus 41 Pdy~~~~~~ 49 (192)
T PRK10893 41 PTYQSQHTD 49 (192)
T ss_pred CCEEEeccE
Confidence 887765543
No 277
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.15 E-value=93 Score=25.37 Aligned_cols=41 Identities=15% Similarity=0.095 Sum_probs=28.2
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 137 YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 137 ~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
+|+-.-||. |-.-.+.|.++.++++......|....+.++|
T Consensus 3 ~~~D~~cP~-cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~ 43 (201)
T cd03024 3 IWSDVVCPW-CYIGKRRLEKALAELGDEVDVEIEWRPFELNP 43 (201)
T ss_pred EEecCcCcc-HHHHHHHHHHHHHhCCCCCceEEEEeeeeeCC
Confidence 466778986 99999999999998854222344444555554
No 278
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=35.84 E-value=32 Score=31.52 Aligned_cols=42 Identities=14% Similarity=0.274 Sum_probs=34.9
Q ss_pred cceeecceeEEEEcC-CCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 227 DYLVESSHNMYLMNP-SLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 227 ~y~v~~~p~~~lID~-~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
-|.+...|.+.+||| .|+-++.+.+.+.++++.+++...|..
T Consensus 149 Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~~ 191 (356)
T KOG1364|consen 149 FYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFIDS 191 (356)
T ss_pred heeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHhc
Confidence 356677889999999 588888887777799999999988864
No 279
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=35.48 E-value=1.6e+02 Score=27.83 Aligned_cols=42 Identities=21% Similarity=0.092 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHc
Q 042757 152 QMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEF 193 (271)
Q Consensus 152 ~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~ 193 (271)
..+.+..+.+.+....+++++.|+-....++.+.++++.+++
T Consensus 88 ~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~ 129 (444)
T PRK14583 88 LNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAED 129 (444)
T ss_pred HHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhC
Confidence 344444444433322468887776544455677777777665
No 280
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=35.48 E-value=75 Score=28.20 Aligned_cols=60 Identities=15% Similarity=0.120 Sum_probs=34.8
Q ss_pred CCCeEEEcCCCCeeecCcCCC-CEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 111 GGPFTLIDTENRLVTENNFLG-NWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~G-k~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.|-|++.|.+|.++-.+.-.| +.+-+++. . =...-..|+++...-.+. +.+++|+.|+.|
T Consensus 82 VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-----~-qedA~afL~~lk~~~p~l-~~~~kV~pvsL~ 142 (270)
T TIGR00995 82 TSVFTVSNAQNEFVLASDNDGEKSIGLLCF-----R-QEDAEAFLAQLRKRKPEV-GSQAKVVPITLD 142 (270)
T ss_pred CceEEEEcCCCCeEEEECCCCCceEEEEEC-----C-HHHHHHHHHHHHhhCccc-cCCceEEEEEHH
Confidence 488999999999877665444 55555332 1 011223334443322222 257888889876
No 281
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=34.48 E-value=1.6e+02 Score=28.05 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=54.1
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecC-------------CHHHHHHHHHHcCceeeeeccCCCcceeec--
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTG-------------PVGAIRQMAQEYRVFFKKVEEEGDDYLVES-- 232 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~-------------~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~-- 232 (271)
+++++.|.+|.+--.++.+.+-++++.+.+..++. ....+-+++++|+++...++-.+ .+..+.
T Consensus 200 g~~~~~vp~d~~G~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~-el~~~~~p 278 (459)
T COG1167 200 GARVIPVPVDEDGIDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYG-ELRYDGPP 278 (459)
T ss_pred CCcEEecCCCCCCCCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcch-hhhcCCCC
Confidence 57888999997777899999998886665554432 23467788899999876554222 222222
Q ss_pred ceeEEEEcCCCeEEEE
Q 042757 233 SHNMYLMNPSLEVVRC 248 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~ 248 (271)
.+.+.-.|++|+|++.
T Consensus 279 ~~~l~~ld~~~rViy~ 294 (459)
T COG1167 279 PPPLKALDAPGRVIYL 294 (459)
T ss_pred CCChHhhCCCCCEEEE
Confidence 2336777888888875
No 282
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=34.17 E-value=91 Score=18.51 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHcCCceeeecCCHHHHHHHHHH
Q 042757 182 TPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQE 213 (271)
Q Consensus 182 t~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 213 (271)
+.+.|++|++.+|....--..+.+++-+.++.
T Consensus 5 s~~~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSAKTRDELLKLAKK 36 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH
Confidence 45788999999886544333355655555544
No 283
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=33.32 E-value=64 Score=30.03 Aligned_cols=12 Identities=8% Similarity=0.066 Sum_probs=6.1
Q ss_pred cceeEEEEcCCC
Q 042757 232 SSHNMYLMNPSL 243 (271)
Q Consensus 232 ~~p~~~lID~~G 243 (271)
..|-+.|+|.+.
T Consensus 240 g~pl~~Iv~~~~ 251 (390)
T PRK15136 240 TTPLMAVVPATN 251 (390)
T ss_pred CCeEEEEEeCCc
Confidence 345555555544
No 284
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=32.98 E-value=30 Score=23.97 Aligned_cols=18 Identities=0% Similarity=0.104 Sum_probs=13.7
Q ss_pred ceeEEEEcCCCeEEEEec
Q 042757 233 SHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~ 250 (271)
....||+|.+|+++.+-.
T Consensus 53 ~g~~~ivd~~G~ii~hp~ 70 (81)
T PF02743_consen 53 NGYAFIVDKNGTIIAHPD 70 (81)
T ss_dssp TBEEEEEETTSBBCE-SS
T ss_pred CEEEEEEECCCCEEEeCC
Confidence 445699999999998754
No 285
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=32.95 E-value=62 Score=29.59 Aligned_cols=15 Identities=7% Similarity=-0.004 Sum_probs=6.9
Q ss_pred eEEEEcCCCeEEEEe
Q 042757 235 NMYLMNPSLEVVRCF 249 (271)
Q Consensus 235 ~~~lID~~G~iv~~~ 249 (271)
..+.|+.-..+...|
T Consensus 293 ~~v~iG~~~~v~i~~ 307 (331)
T PRK10856 293 YKLKIGAPAAVQIQY 307 (331)
T ss_pred EEEEEcCCCceEEEE
Confidence 344555444444444
No 286
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=32.32 E-value=2.4e+02 Score=23.69 Aligned_cols=27 Identities=15% Similarity=0.118 Sum_probs=17.8
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
+++++.|.-....+|.+.++++.++++
T Consensus 40 ~~eiivvDdgS~D~t~~i~~~~~~~~~ 66 (243)
T PLN02726 40 DFEIIVVDDGSPDGTQDVVKQLQKVYG 66 (243)
T ss_pred CeEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 577777754444456777788777664
No 287
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=32.19 E-value=3.1e+02 Score=23.15 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=25.3
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 137 YFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 137 ~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
-|..-.|+. ||..-..|.++..+ .+|-.+..-||.
T Consensus 4 LFTSQGCsS-CPpAD~~L~~l~~~------~~Vi~LafHVDY 38 (202)
T PF06764_consen 4 LFTSQGCSS-CPPADRLLSELAAR------PDVIALAFHVDY 38 (202)
T ss_dssp EEE-TT-TT--HHHHHHHHHHHHH------TSSEEEEEE-ST
T ss_pred EecCCCCCC-CcHHHHHHHHhhcC------CCEEEEEecCCc
Confidence 377889997 99999999998886 268888888885
No 288
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=31.66 E-value=1.2e+02 Score=24.41 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=12.3
Q ss_pred eEEEEecCCCCHHHHHHHHHH
Q 042757 244 EVVRCFGVEYTAEELAEEISK 264 (271)
Q Consensus 244 ~iv~~~~~~~~~~~l~~~i~~ 264 (271)
+|+.++...+.+.++.+.+++
T Consensus 118 ~vLaKc~skY~p~ev~~~~~~ 138 (148)
T PRK13254 118 EVLAKHDENYMPKEVADALKK 138 (148)
T ss_pred EEEecCCCCCCCHHHHHHHHH
Confidence 455555666666666666554
No 289
>COG2237 Predicted membrane protein [Function unknown]
Probab=31.51 E-value=1.2e+02 Score=28.15 Aligned_cols=49 Identities=18% Similarity=0.110 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhhccCCCeeEEEEEeCCCCC------CHHHHHHHHHHcCCceeee
Q 042757 151 VQMMAKAIDILDSKKNLKILPIFVTIDPQRD------TPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 151 l~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D------t~~~l~~~~~~~~~~~~~l 200 (271)
+=.--++++++++++ +++++..|+-|+.-+ -.+++.+.+++++|+...+
T Consensus 50 lf~alkiydeLk~~g-eDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~ 104 (364)
T COG2237 50 LFAALKIYDELKAKG-EDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVV 104 (364)
T ss_pred HHHHHHHHHHHhccC-CceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEE
Confidence 334457889999887 699999999886422 1455567777788765443
No 290
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=31.44 E-value=1.2e+02 Score=19.26 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=20.6
Q ss_pred EEEcCCCeEEEEecC--CCCHHHHHHHHHHHhh
Q 042757 237 YLMNPSLEVVRCFGV--EYTAEELAEEISKEMK 267 (271)
Q Consensus 237 ~lID~~G~iv~~~~~--~~~~~~l~~~i~~lL~ 267 (271)
|.|+|||+|...-.+ ..+=.++.+.|++.|.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~LG 35 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEALG 35 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHhC
Confidence 789999999876532 2333556666666664
No 291
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=30.71 E-value=1.3e+02 Score=24.36 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=10.2
Q ss_pred CEEEEEEeeCCCCCChHHHH
Q 042757 132 NWVLLYFGYTSSPDVGPEQV 151 (271)
Q Consensus 132 k~vll~F~at~Cp~~C~~el 151 (271)
+++-+-+.+.--...|..|+
T Consensus 79 ~~v~i~i~l~~~n~~~~~el 98 (159)
T COG1580 79 RYVKIAITLEVANKALLEEL 98 (159)
T ss_pred EEEEEEEEEeeCCHHHHHHH
Confidence 45555555544444465555
No 292
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=30.39 E-value=1.5e+02 Score=20.93 Aligned_cols=16 Identities=13% Similarity=0.482 Sum_probs=11.0
Q ss_pred ceeEEEEcCCCeEEEE
Q 042757 233 SHNMYLMNPSLEVVRC 248 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~ 248 (271)
...+++.||+|+++..
T Consensus 92 ~~~~~~~DPdG~~ie~ 107 (108)
T PF12681_consen 92 QRSFYFIDPDGNRIEF 107 (108)
T ss_dssp EEEEEEE-TTS-EEEE
T ss_pred eEEEEEECCCCCEEEe
Confidence 3577999999998754
No 293
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=30.06 E-value=23 Score=24.28 Aligned_cols=14 Identities=14% Similarity=0.228 Sum_probs=11.8
Q ss_pred EEEEcCCCeEEEEe
Q 042757 236 MYLMNPSLEVVRCF 249 (271)
Q Consensus 236 ~~lID~~G~iv~~~ 249 (271)
.|.||++|++....
T Consensus 21 ~~~I~~~G~v~~~~ 34 (79)
T PF03544_consen 21 EFTIDPDGRVSDVR 34 (79)
T ss_dssp EEEEETTTEEEEEE
T ss_pred EEEEeCCCCEEEEE
Confidence 49999999998754
No 294
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=29.67 E-value=2.4e+02 Score=28.03 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=26.4
Q ss_pred EEeeCCCCCChHHHHHHHHHHHHHHhhcc----CCCeeEEEEEe
Q 042757 137 YFGYTSSPDVGPEQVQMMAKAIDILDSKK----NLKILPIFVTI 176 (271)
Q Consensus 137 ~F~at~Cp~~C~~el~~l~~l~~~l~~~~----~~~v~~v~Isv 176 (271)
.-=|-.||. |-..+-.|++.....++.- +.++-+.+=-|
T Consensus 515 KTEyISCPs-CGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIV 557 (611)
T PRK02048 515 KTEYISCPG-CGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIV 557 (611)
T ss_pred cceEEECCC-CCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEe
Confidence 334558997 9999999999888877654 23444444444
No 295
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=29.60 E-value=3.7e+02 Score=23.25 Aligned_cols=60 Identities=17% Similarity=0.154 Sum_probs=34.9
Q ss_pred CEEEEEEeeCC-CCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 132 NWVLLYFGYTS-SPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 132 k~vll~F~at~-Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
+++-|.++++. =|..=......+.++.++|....+.++.+-+|..| ..++..++.+++++
T Consensus 25 ~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~---~~~~~~~~~~~~~G 85 (271)
T PF09822_consen 25 EPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPD---ENPSEAEEKAKEYG 85 (271)
T ss_pred CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCC---CChHHHHHHHHhcC
Confidence 45555555554 33323456677788888888776447777666532 23455555555554
No 296
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=29.50 E-value=2.1e+02 Score=20.40 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=12.9
Q ss_pred eeEEEEcCCCeEEEEe
Q 042757 234 HNMYLMNPSLEVVRCF 249 (271)
Q Consensus 234 p~~~lID~~G~iv~~~ 249 (271)
..+|+.||+|+.+...
T Consensus 94 ~~~~~~DP~Gn~i~~~ 109 (112)
T cd07238 94 RRFFVRDPFGKLVNIL 109 (112)
T ss_pred EEEEEECCCCCEEEEE
Confidence 3568999999998764
No 297
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=29.29 E-value=4e+02 Score=23.50 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=49.4
Q ss_pred CChHHHHHHHHHHHHHHhhccCCCee---EEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHHHHHHHcCceeee
Q 042757 145 DVGPEQVQMMAKAIDILDSKKNLKIL---PIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKK 220 (271)
Q Consensus 145 ~~C~~el~~l~~l~~~l~~~~~~~v~---~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~ 220 (271)
+.|+.....+.+..++++- ++. ++...--|.-+|+++.+.|..-+|.+..+.+.-.|.+ ++++.|+.|..
T Consensus 136 ~y~~~Lr~~l~~aA~~~g~----~~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS~vpEvi--lAre~g~~~~~ 208 (267)
T PRK08564 136 PFCPELRKIIIETAKELGI----RTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMTLVPEVN--LACELGMCYAT 208 (267)
T ss_pred ccCHHHHHHHHHHHHHcCC----ceecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccCccHHHH--HHHHcCCceEE
Confidence 3577777777777766542 222 3344446888999999988654589999998888865 67999887643
No 298
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=28.97 E-value=1.4e+02 Score=27.89 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=5.5
Q ss_pred CCeEEEcCCCC
Q 042757 112 GPFTLIDTENR 122 (271)
Q Consensus 112 p~f~l~d~~G~ 122 (271)
-++++..++.-
T Consensus 331 ~~v~v~~I~NV 341 (387)
T PF12751_consen 331 TDVQVVSIQNV 341 (387)
T ss_pred ccceEEEeeee
Confidence 45555555443
No 299
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=28.74 E-value=2.2e+02 Score=20.40 Aligned_cols=14 Identities=7% Similarity=0.138 Sum_probs=11.2
Q ss_pred eeEEEEcCCCeEEE
Q 042757 234 HNMYLMNPSLEVVR 247 (271)
Q Consensus 234 p~~~lID~~G~iv~ 247 (271)
...|+.||+|.++.
T Consensus 106 ~~~~~~DpdG~~iE 119 (121)
T cd07233 106 GIAFIKDPDGYWIE 119 (121)
T ss_pred eEEEEECCCCCEEE
Confidence 34589999999875
No 300
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=28.71 E-value=2.3e+02 Score=20.59 Aligned_cols=16 Identities=6% Similarity=0.210 Sum_probs=13.2
Q ss_pred eeEEEEcCCCeEEEEe
Q 042757 234 HNMYLMNPSLEVVRCF 249 (271)
Q Consensus 234 p~~~lID~~G~iv~~~ 249 (271)
..+++.||+|+++...
T Consensus 102 r~~~~~DPdGn~iei~ 117 (120)
T cd09011 102 RVVRFYDPDKHIIEVG 117 (120)
T ss_pred EEEEEECCCCCEEEEe
Confidence 4679999999998654
No 301
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=28.54 E-value=57 Score=25.59 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=13.0
Q ss_pred eeEEEEcCCCeEEEEe
Q 042757 234 HNMYLMNPSLEVVRCF 249 (271)
Q Consensus 234 p~~~lID~~G~iv~~~ 249 (271)
-.++++|++|++++.+
T Consensus 51 d~~~~~d~~g~~~~~~ 66 (161)
T PF05228_consen 51 DLIFILDPDGRVLYSS 66 (161)
T ss_pred cEEEEEcCCCCEEEEe
Confidence 3469999999999843
No 302
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=28.54 E-value=4.4e+02 Score=23.78 Aligned_cols=26 Identities=15% Similarity=0.119 Sum_probs=18.3
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHc
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEF 193 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~ 193 (271)
+++++.|.-....+|.+.+++|.+++
T Consensus 107 ~~EIIVVDDgStD~T~~i~~~~~~~~ 132 (333)
T PTZ00260 107 KYEIIIVNDGSKDKTLKVAKDFWRQN 132 (333)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhc
Confidence 57877775444455788888888775
No 303
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=28.45 E-value=1.9e+02 Score=20.68 Aligned_cols=17 Identities=12% Similarity=0.305 Sum_probs=14.0
Q ss_pred eeEEEEcCCCeEEEEec
Q 042757 234 HNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 234 p~~~lID~~G~iv~~~~ 250 (271)
..+|+.||+|+++..+-
T Consensus 97 ~~~~~~DP~G~~ie~~~ 113 (117)
T cd07240 97 RGLRFQDPDGHLLELFV 113 (117)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 45699999999998763
No 304
>PHA02975 hypothetical protein; Provisional
Probab=28.44 E-value=99 Score=21.36 Aligned_cols=8 Identities=13% Similarity=-0.185 Sum_probs=3.0
Q ss_pred chhhHHHH
Q 042757 62 SWSTYVIP 69 (271)
Q Consensus 62 ~~~~~~~~ 69 (271)
.|.++++.
T Consensus 43 ~~~~~ii~ 50 (69)
T PHA02975 43 LSIILIIF 50 (69)
T ss_pred hHHHHHHH
Confidence 33333333
No 305
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=28.26 E-value=2.3e+02 Score=25.22 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHc
Q 042757 149 EQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEF 193 (271)
Q Consensus 149 ~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~ 193 (271)
.|-..|.+-.+.|.++. ..+++.|.++... .+.+++|..++
T Consensus 46 ~e~~~Leq~l~~L~~kt--~~QiaVv~vpSt~--g~~IE~ya~rl 86 (271)
T COG1512 46 AERGALEQQLADLEQKT--GAQIAVVTVPSTG--GETIEQYATRL 86 (271)
T ss_pred hhHHHHHHHHHHHHhcc--CCeEEEEEecCCC--CCCHHHHHHHH
Confidence 55677777777787765 4555666665422 24455665543
No 306
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=27.85 E-value=1.2e+02 Score=30.07 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=16.7
Q ss_pred eEEEcCCCCeeecCcCCCCEE
Q 042757 114 FTLIDTENRLVTENNFLGNWV 134 (271)
Q Consensus 114 f~l~d~~G~~v~l~~~~Gk~v 134 (271)
++.+|..|+.++-..+.|++.
T Consensus 109 t~akdwagelisgqtltgr~l 129 (1103)
T KOG1420|consen 109 TSAKDWAGELISGQTLTGRVL 129 (1103)
T ss_pred EEehhhhcceeecccccceee
Confidence 557788899888888888863
No 307
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=27.82 E-value=2.6e+02 Score=22.06 Aligned_cols=18 Identities=22% Similarity=0.475 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhhhhh
Q 042757 73 LLGLAGIATFVHYNDERR 90 (271)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~ 90 (271)
.++++++++|+...+.+.
T Consensus 21 wiFFagLi~YLrrEdkRE 38 (136)
T PF03967_consen 21 WIFFAGLIYYLRREDKRE 38 (136)
T ss_dssp HHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcccccc
Confidence 566777777776554443
No 308
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=27.77 E-value=4.1e+02 Score=23.13 Aligned_cols=46 Identities=17% Similarity=0.152 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC---CCCCHHHHHHHHHHcCC
Q 042757 147 GPEQVQMMAKAIDILDSKKNLKILPIFVTIDP---QRDTPAHLRAYLKEFNS 195 (271)
Q Consensus 147 C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp---~~Dt~~~l~~~~~~~~~ 195 (271)
.+.....|....+-|++. ++..+.+|-|. ..+.++.+++|+.+.|.
T Consensus 63 s~~l~~Rl~~A~~LYk~g---k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GV 111 (239)
T PRK10834 63 NQYYRYRIQGAINAYNSG---KVNYLLLSGDNALQSYNEPMTMRKDLIAAGV 111 (239)
T ss_pred CHHHHHHHHHHHHHHHhC---CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCC
Confidence 555556777766666642 45667788763 34668888999988874
No 309
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=27.34 E-value=77 Score=28.78 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=26.2
Q ss_pred CCeEEEcCCCCeeecCcCC-CCEEEEEEeeCCCCCCh
Q 042757 112 GPFTLIDTENRLVTENNFL-GNWVLLYFGYTSSPDVG 147 (271)
Q Consensus 112 p~f~l~d~~G~~v~l~~~~-Gk~vll~F~at~Cp~~C 147 (271)
|-.-+.|.+|+++..+++. |.++.+.|-+.-=.+.|
T Consensus 101 pk~La~D~~GnPIKASdL~vnSp~~~lfeyPl~gdP~ 137 (321)
T TIGR03171 101 PKSLLVDSSGNPIKASSIPVNSPIITIFEYPMTGEPN 137 (321)
T ss_pred CceEEecCCCCeeeHHHccCCCcccccccCcCCCCcH
Confidence 5566889999999999985 66776666666443335
No 310
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.33 E-value=2.2e+02 Score=23.57 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.7
Q ss_pred HHHHHHHHHhh
Q 042757 74 LGLAGIATFVH 84 (271)
Q Consensus 74 ~~~~~~~~~~~ 84 (271)
++.+|+++|++
T Consensus 31 l~~~G~~~~~~ 41 (182)
T PRK08455 31 LLIVGVIAMLL 41 (182)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 311
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.17 E-value=47 Score=27.09 Aligned_cols=16 Identities=19% Similarity=0.036 Sum_probs=7.0
Q ss_pred eeecCcCC---CCEEEEEE
Q 042757 123 LVTENNFL---GNWVLLYF 138 (271)
Q Consensus 123 ~v~l~~~~---Gk~vll~F 138 (271)
.+++.+-. ++++=+.+
T Consensus 75 vVNL~~~~~~~~ryLkv~i 93 (166)
T PRK12785 75 LVNLAGDPGERVQYLKLKV 93 (166)
T ss_pred EEECCCCCCCcceEEEEEE
Confidence 45554432 24544444
No 312
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=27.07 E-value=1.8e+02 Score=21.92 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=15.0
Q ss_pred eeEEEEcCCCeEEEEecC
Q 042757 234 HNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 234 p~~~lID~~G~iv~~~~~ 251 (271)
-.+|+.||+|+.+..+.+
T Consensus 105 ~~~yf~DPdG~~iEl~~~ 122 (131)
T cd08364 105 RSIYFYDFDNHLFELHTG 122 (131)
T ss_pred eEEEEECCCCCEEEEecC
Confidence 367999999999988754
No 313
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=27.01 E-value=2.2e+02 Score=24.79 Aligned_cols=71 Identities=10% Similarity=0.069 Sum_probs=45.0
Q ss_pred HHHHHHcCCceeeecCCHHHHHHHHHHcCceeeeeccCCCcceeecceeEEEEcCCCeEEEEe-cCC--CCHHHHHHHHH
Q 042757 187 RAYLKEFNSRIVGLTGPVGAIRQMAQEYRVFFKKVEEEGDDYLVESSHNMYLMNPSLEVVRCF-GVE--YTAEELAEEIS 263 (271)
Q Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~gv~~~~~~~~~~~y~v~~~p~~~lID~~G~iv~~~-~~~--~~~~~l~~~i~ 263 (271)
-+-+..|+|+.+.+.-....+.+.++++|+....+--....| +++|+++-+- .+. .++++..+.+.
T Consensus 130 ~~av~~~dp~L~l~~Lags~~~~~a~~~GL~~~~EvFADR~Y-----------~~dG~Lv~R~~pgA~i~d~~~a~~qvl 198 (252)
T COG1540 130 AEAVAAFDPSLILMGLAGSELLRAAKRAGLPVAEEVFADRAY-----------QPDGTLVPRSLPGAVIHDEEEALAQVL 198 (252)
T ss_pred HHHHHHhCCCceEEecCcHHHHHHHHHcCchhHHHHhccccc-----------CCCCcEecCCCCCccccCHHHHHHHHH
Confidence 444566888877666555677888999987543221122333 5899999775 332 46777777766
Q ss_pred HHhhh
Q 042757 264 KEMKK 268 (271)
Q Consensus 264 ~lL~~ 268 (271)
.+.++
T Consensus 199 ~m~~~ 203 (252)
T COG1540 199 QMVRE 203 (252)
T ss_pred HHHhc
Confidence 66654
No 314
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=26.93 E-value=3.2e+02 Score=21.61 Aligned_cols=76 Identities=14% Similarity=0.169 Sum_probs=42.5
Q ss_pred CCCCEEEEEEeeCCCCCCh--HHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCH---------HHHHHHHHHcCCce
Q 042757 129 FLGNWVLLYFGYTSSPDVG--PEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTP---------AHLRAYLKEFNSRI 197 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C--~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~---------~~l~~~~~~~~~~~ 197 (271)
.+..+++|.|+...+-..+ ......++++.+.+++. +..+|.++.-|..+.. +...+|
T Consensus 58 ~~~d~v~i~~G~ND~~~~~~~~~~~~~~~~li~~~~~~---~~~~il~~~~p~~~~~~~~~~~~~~~~~~~~-------- 126 (183)
T cd04501 58 LKPAVVIIMGGTNDIIVNTSLEMIKDNIRSMVELAEAN---GIKVILASPLPVDDYPWKPQWLRPANKLKSL-------- 126 (183)
T ss_pred cCCCEEEEEeccCccccCCCHHHHHHHHHHHHHHHHHC---CCcEEEEeCCCcCccccchhhcchHHHHHHH--------
Confidence 3556777777655553222 34456677777777654 3566667665543321 122222
Q ss_pred eeecCCHHHHHHHHHHcCceeeee
Q 042757 198 VGLTGPVGAIRQMAQEYRVFFKKV 221 (271)
Q Consensus 198 ~~l~~~~~~~~~~~~~~gv~~~~~ 221 (271)
.+.+.+++++.++.+...
T Consensus 127 ------n~~~~~~a~~~~v~~vd~ 144 (183)
T cd04501 127 ------NRWLKDYARENGLLFLDF 144 (183)
T ss_pred ------HHHHHHHHHHcCCCEEec
Confidence 234667788888776543
No 315
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=26.91 E-value=2.2e+02 Score=26.25 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEeCCCCCC------HHHHHHHHHHcCCce
Q 042757 153 MMAKAIDILDSKKNLKILPIFVTIDPQRDT------PAHLRAYLKEFNSRI 197 (271)
Q Consensus 153 ~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt------~~~l~~~~~~~~~~~ 197 (271)
.--++++++++++ .++++..|+-|+..+- .+++.+-+++++++.
T Consensus 52 ~avkiydeL~~~G-edveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~ 101 (344)
T PF04123_consen 52 GAVKIYDELKAEG-EDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDS 101 (344)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCE
Confidence 3356788898885 5999999998875432 345566677777764
No 316
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=26.85 E-value=3.3e+02 Score=21.72 Aligned_cols=48 Identities=10% Similarity=0.074 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeee
Q 042757 153 MMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGL 200 (271)
Q Consensus 153 ~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l 200 (271)
.|.+..+.+.+....+++++.|.-....++.+.++++..+++..+..+
T Consensus 12 ~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~ 59 (214)
T cd04196 12 YLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYIDKDPFIIILI 59 (214)
T ss_pred HHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEE
Confidence 344444433332223678777754444557777888877765333333
No 317
>PRK06683 hypothetical protein; Provisional
Probab=26.48 E-value=2.4e+02 Score=20.02 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=23.9
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
++..|+|.-|-...+.+.+..+.+.++..+..+. +.+++
T Consensus 27 kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~-t~~eL 65 (82)
T PRK06683 27 IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE-SVRKL 65 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC-CHHHH
Confidence 5777777776555555666666677776665544 44433
No 318
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=26.36 E-value=1.3e+02 Score=25.02 Aligned_cols=27 Identities=11% Similarity=0.316 Sum_probs=16.9
Q ss_pred eeEEEEcCCCeEEEEe-cCCCCHHHHHH
Q 042757 234 HNMYLMNPSLEVVRCF-GVEYTAEELAE 260 (271)
Q Consensus 234 p~~~lID~~G~iv~~~-~~~~~~~~l~~ 260 (271)
..+||||++|+|..++ ..+.+-+.+.+
T Consensus 36 aNvyIis~kGkiLGy~~~~~~~~~~~~~ 63 (177)
T PF06018_consen 36 ANVYIISRKGKILGYSFIDDFECDRMEE 63 (177)
T ss_dssp SEEEEEETTSBEEEEE-SS----HHHHH
T ss_pred CcEEEEeCCccEEEEeccCCCCcHHHHH
Confidence 4569999999999776 34454444444
No 319
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=26.28 E-value=3.8e+02 Score=22.24 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=36.8
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCC-CHHHHHHHHHHcCCceeeec
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRD-TPAHLRAYLKEFNSRIVGLT 201 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D-t~~~l~~~~~~~~~~~~~l~ 201 (271)
+++..+.+.+. =...+. ++...+..+ +-++..|+.|..|- .-++++.|++..+..+....
T Consensus 3 vi~lvGptGvG--KTTt~a---KLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVG--KTTTIA---KLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSS--HHHHHH---HHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCc--hHhHHH---HHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 55667888886 233344 444444433 24556788887654 46788999999887665543
No 320
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=26.15 E-value=1e+02 Score=24.23 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCC------ceeeecCCH-----HHHHHHHHHcCceee--eeccCCCcceeecceeEEEEcCCCeEEE
Q 042757 183 PAHLRAYLKEFNS------RIVGLTGPV-----GAIRQMAQEYRVFFK--KVEEEGDDYLVESSHNMYLMNPSLEVVR 247 (271)
Q Consensus 183 ~~~l~~~~~~~~~------~~~~l~~~~-----~~~~~~~~~~gv~~~--~~~~~~~~y~v~~~p~~~lID~~G~iv~ 247 (271)
|+..++|+..++. ...+++.+. -++.+-+++.|+... +..+.+++| |.||++|.|+.
T Consensus 39 P~eyk~fL~~~s~v~~G~~E~~~i~~~~s~~~l~e~~~~ar~~glP~~~ipice~~~~y--------Ycl~~~g~V~~ 108 (132)
T PF14567_consen 39 PEEYKEFLLEASDVIYGGLEPVGIGDPPSHTYLPEVTADARSIGLPRELIPICEDGGDY--------YCLDQEGEVVY 108 (132)
T ss_dssp -HHHHHHHHHHTT--BTTB-B-BSS-TTSTTBHHHHHHHHHHHT--TTSEEEEEETTEE--------EEE-TTS-EEE
T ss_pred CHHHHHHHHHCCCeeecceEEEEEEcCCCcccHHHHHHHHHHcCCChhheeEEecCCcE--------EEEeCCCeEEE
Confidence 6778888888642 112222221 122233344555322 222344555 99999999883
No 321
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=26.12 E-value=2.1e+02 Score=20.69 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=13.2
Q ss_pred eEEEEcCCCeEEEEec
Q 042757 235 NMYLMNPSLEVVRCFG 250 (271)
Q Consensus 235 ~~~lID~~G~iv~~~~ 250 (271)
.+|+-||+|+.+..+-
T Consensus 94 ~~~~~DPdG~~iEl~~ 109 (113)
T cd07267 94 RVTLTDPDGFPVELVY 109 (113)
T ss_pred EEEEECCCCCEEEEEe
Confidence 5699999999987653
No 322
>PRK07714 hypothetical protein; Provisional
Probab=25.98 E-value=2.7e+02 Score=20.39 Aligned_cols=39 Identities=10% Similarity=0.123 Sum_probs=25.7
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAI 207 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~ 207 (271)
++.+|.++-|-..++.+.+..+++.++..+..+ ++.+++
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~-~sk~eL 72 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV-ENRQQL 72 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe-CCHHHH
Confidence 577788887776667777777777777666544 444443
No 323
>PRK13620 psbV cytochrome c-550; Provisional
Probab=25.58 E-value=3.9 Score=34.59 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=36.4
Q ss_pred cCCCCeeecCc--C-CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHH
Q 042757 118 DTENRLVTENN--F-LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKE 192 (271)
Q Consensus 118 d~~G~~v~l~~--~-~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~ 192 (271)
|.+|++++++. . +||-+ | -.||.. |.. ..-.+. ...-+.+...+.+.. |.+++++.+..|+++
T Consensus 91 n~~G~tvtfS~eq~~~GkqL---F-~~~Ca~-CHV--gG~Tkt----np~vgpdLt~LaaAt-ppRdn~e~Lv~wLkd 156 (215)
T PRK13620 91 NPQGDNVTLSLKQVAEGKQL---F-AYACGQ-CHV--GGITKT----DPNVGLDPEALALAT-PPRDSVESLVDYLHN 156 (215)
T ss_pred CCCCCeecCCHHHHHHHHHH---H-Hhhhhh-ccC--CCCCCC----CCCCCCCHHHHhccC-CCCCCHHHHHHHHhC
Confidence 66788877654 3 57654 3 789986 973 100000 001123444454555 447899999999865
No 324
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=25.33 E-value=1.1e+02 Score=24.51 Aligned_cols=41 Identities=12% Similarity=-0.050 Sum_probs=31.7
Q ss_pred EEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
+|.+|+-.-||. |-...+.|.++.+.+.+ .+|+...+.+.+
T Consensus 1 ~i~~~~D~~Cp~-cy~~~~~l~~l~~~~~~---~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPW-CYLASPRLRKLRAEYPD---VEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHH-HHHHHHHHHHHHHHHTT---CEEEEEEESSST
T ss_pred CEEEEEeCCCHH-HHHHHHHHHHHHHHhcC---CcEEEecccccc
Confidence 467888999997 99999999999998831 356666666554
No 325
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=25.32 E-value=1.7e+02 Score=22.27 Aligned_cols=23 Identities=9% Similarity=0.186 Sum_probs=17.6
Q ss_pred ceeEEEEcCCCeEEEEecCCCCH
Q 042757 233 SHNMYLMNPSLEVVRCFGVEYTA 255 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~~~~~~ 255 (271)
...+|+-||+|+++....+..++
T Consensus 101 ~~~~~~~DPdGn~iEl~~~~~~~ 123 (139)
T PRK04101 101 KKSIYFTDPDGHKFEFHTGTLQD 123 (139)
T ss_pred ceEEEEECCCCCEEEEEeCCHHH
Confidence 35679999999999887665433
No 326
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=25.32 E-value=1.3e+02 Score=22.09 Aligned_cols=19 Identities=11% Similarity=0.252 Sum_probs=15.2
Q ss_pred eeEEEEcCCCeEEEEecCC
Q 042757 234 HNMYLMNPSLEVVRCFGVE 252 (271)
Q Consensus 234 p~~~lID~~G~iv~~~~~~ 252 (271)
..+|+.||+|+.+..+.+.
T Consensus 93 ~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 93 DSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred cEEEEECCCCCEEEEEeCC
Confidence 3569999999999887543
No 327
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=25.21 E-value=1.9e+02 Score=21.03 Aligned_cols=8 Identities=38% Similarity=0.297 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 042757 73 LLGLAGIA 80 (271)
Q Consensus 73 ~~~~~~~~ 80 (271)
.+.++|++
T Consensus 39 ~lmllGL~ 46 (87)
T PF06781_consen 39 GLMLLGLL 46 (87)
T ss_pred HHHHHHHH
Confidence 33334444
No 328
>TIGR03027 pepcterm_export putative polysaccharide export protein, PEP-CTERM sytem-associated. This protein family belongs to the larger set of polysaccharide biosynthesis/export proteins described by Pfam model pfam02563. Members of this family are variable in either containing of lacking a 78-residue insert, but appear to fall within a single clade, nevertheless, where the regions in which the gene is found encode components of the PEP-CTERM/EpsH proposed exosortase protein sorting system.
Probab=25.20 E-value=1.4e+02 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=27.0
Q ss_pred EEEEcCCCeEEEEe-----cCCCCHHHHHHHHHHHhhh
Q 042757 236 MYLMNPSLEVVRCF-----GVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 236 ~~lID~~G~iv~~~-----~~~~~~~~l~~~i~~lL~~ 268 (271)
.+.||++|.|-.-+ ....+.+++.+.|++.|++
T Consensus 22 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~ 59 (165)
T TIGR03027 22 SVPVRPDGKITTPLVGDLVASGKTPTQLARDIEEKLAK 59 (165)
T ss_pred ceEECCCCeEeecccCeEEECCCCHHHHHHHHHHHHHH
Confidence 38999999998765 3468899999999988865
No 329
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.15 E-value=5.9e+02 Score=24.08 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=42.7
Q ss_pred CCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCC-CHHHHHHHHHHcCCceeeecCCHHHHHH
Q 042757 131 GNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRD-TPAHLRAYLKEFNSRIVGLTGPVGAIRQ 209 (271)
Q Consensus 131 Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~D-t~~~l~~~~~~~~~~~~~l~~~~~~~~~ 209 (271)
+.-+++..+.++|+- ...+..|. ..+... +..+..|+.|+.+- ..+.++.|.+..+..+... .+.+.+..
T Consensus 205 ~~~ii~lvGptGvGK--TTt~akLA---~~l~~~---g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~-~dp~dL~~ 275 (407)
T PRK12726 205 NHRIISLIGQTGVGK--TTTLVKLG---WQLLKQ---NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVA-TSPAELEE 275 (407)
T ss_pred CCeEEEEECCCCCCH--HHHHHHHH---HHHHHc---CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEec-CCHHHHHH
Confidence 344566678888863 23334443 233322 24567799998764 3678899988887655433 34455544
Q ss_pred HHH
Q 042757 210 MAQ 212 (271)
Q Consensus 210 ~~~ 212 (271)
..+
T Consensus 276 al~ 278 (407)
T PRK12726 276 AVQ 278 (407)
T ss_pred HHH
Confidence 333
No 330
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=24.72 E-value=1.2e+02 Score=28.53 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=21.0
Q ss_pred EEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 135 LLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 135 ll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
++.|.-+|||. |...-..|++. ++.+-.|.+|
T Consensus 4 V~vys~~~Cp~-C~~aK~~L~~~----------gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPF-CDLAKSWFGAN----------DIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC----------CCCeEEEECC
Confidence 55688899997 98765555542 3555556666
No 331
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.71 E-value=2.1e+02 Score=24.72 Aligned_cols=118 Identities=8% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHcCC-ceeee-------------cCCHHHHHHHHHHc
Q 042757 149 EQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEFNS-RIVGL-------------TGPVGAIRQMAQEY 214 (271)
Q Consensus 149 ~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~-~~~~l-------------~~~~~~~~~~~~~~ 214 (271)
.+...+++....++...+..+.+-.+...|+...+-.+-.|++..|+ .+.++ .++.+.+..++.+.
T Consensus 71 ~~~~~~~~~~~~~~~~~Gi~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA~~~ 150 (225)
T COG2761 71 EEQKAAHARLEELAEEEGIDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIAEEV 150 (225)
T ss_pred HHHHHHHHHHHHhhHhcCcccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHh
Q ss_pred CceeeeeccCC----------------CcceeecceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhhhcC
Q 042757 215 RVFFKKVEEEG----------------DDYLVESSHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKKAST 271 (271)
Q Consensus 215 gv~~~~~~~~~----------------~~y~v~~~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~~~~ 271 (271)
|+........- ...+|...|++++ .+|..+ .|...++.+...|++++++...
T Consensus 151 GLD~~~~~~~L~s~~~~~avr~d~~~A~e~gI~gVP~fv~--d~~~~V---~Gaq~~~v~~~al~~~~~~~~~ 218 (225)
T COG2761 151 GLDREEFKADLASDAAKDAVRQDEAAAQEMGIRGVPTFVF--DGKYAV---SGAQPYDVLEDALRQLLAEKAE 218 (225)
T ss_pred CCCHHHHHHHHhChHHHHHHHHHHHHHHHCCCccCceEEE--cCcEee---cCCCCHHHHHHHHHHHHhcccc
No 332
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.65 E-value=55 Score=28.08 Aligned_cols=23 Identities=9% Similarity=-0.182 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhh
Q 042757 63 WSTYVIPAGGLLGLAGIATFVHY 85 (271)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~ 85 (271)
..|.+++++++|+++++++.+++
T Consensus 14 ~iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 14 KILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hhHHHHHHHHHHHHHHHhhhhee
Confidence 34444444433333333333443
No 333
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=24.50 E-value=1.1e+02 Score=27.63 Aligned_cols=16 Identities=19% Similarity=0.316 Sum_probs=13.5
Q ss_pred eEEEEcCCCeEEEEec
Q 042757 235 NMYLMNPSLEVVRCFG 250 (271)
Q Consensus 235 ~~~lID~~G~iv~~~~ 250 (271)
.+|+||++|++++...
T Consensus 106 ~vf~vd~~G~~vy~~~ 121 (295)
T COG3322 106 GVFVVDPSGKLVYSKL 121 (295)
T ss_pred EEEEECCCCCEEEEee
Confidence 3599999999998863
No 334
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=24.40 E-value=5e+02 Score=22.99 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=27.8
Q ss_pred CCCeEEEcCCCCeeecCcCC--CCEEEEEEeeCCCCCChHHHHHH-HHHHHHHHhhccCCCeeEEEEEeC
Q 042757 111 GGPFTLIDTENRLVTENNFL--GNWVLLYFGYTSSPDVGPEQVQM-MAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 111 ~p~f~l~d~~G~~v~l~~~~--Gk~vll~F~at~Cp~~C~~el~~-l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
.|-|.+.|.+|.++-...-. ++.+.+.|. |+.+... |+++...-.+. +.+++|+.|++|
T Consensus 75 VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~ 136 (274)
T PF04278_consen 75 VPVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLG 136 (274)
T ss_dssp SEEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHH
T ss_pred ceEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHH
Confidence 38899999999987665544 565555443 4444433 33333322211 247888889875
No 335
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=23.89 E-value=2e+02 Score=20.66 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=12.8
Q ss_pred eeEEEEcCCCeEEEEe
Q 042757 234 HNMYLMNPSLEVVRCF 249 (271)
Q Consensus 234 p~~~lID~~G~iv~~~ 249 (271)
..+|+.||+|.++...
T Consensus 108 ~~~~~~DPdG~~ve~~ 123 (125)
T cd07253 108 TSVYFRDPDGNLIELS 123 (125)
T ss_pred cEEEEECCCCCEEEee
Confidence 4579999999998653
No 336
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=23.76 E-value=99 Score=23.66 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=32.8
Q ss_pred EEeCCCCCCHHHHHHHHHHcCCceeee-----cCCHHHHHHHHHHcCc
Q 042757 174 VTIDPQRDTPAHLRAYLKEFNSRIVGL-----TGPVGAIRQMAQEYRV 216 (271)
Q Consensus 174 IsvDp~~Dt~~~l~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~gv 216 (271)
|--.|.-++-..+++|+++++..+... ..+.+.+.++.+..|.
T Consensus 5 iy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~ 52 (117)
T COG1393 5 IYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGD 52 (117)
T ss_pred EEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCc
Confidence 334567789999999999999776432 4478888898888874
No 337
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=23.69 E-value=2.5e+02 Score=20.94 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHHHHc
Q 042757 152 QMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYLKEF 193 (271)
Q Consensus 152 ~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~~~~ 193 (271)
..|.+..+.+.+.....++++.|.-.+...+.+.++++...+
T Consensus 10 ~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~~~~ 51 (180)
T cd06423 10 AVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELAALY 51 (180)
T ss_pred HHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHhccc
Confidence 455555555544322356665554444444555555555443
No 338
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=23.59 E-value=2.2e+02 Score=20.94 Aligned_cols=18 Identities=11% Similarity=0.458 Sum_probs=14.7
Q ss_pred ceeEEEEcCCCeEEEEec
Q 042757 233 SHNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~ 250 (271)
...+|+.||+|+.+....
T Consensus 103 ~~~~~f~DPdG~~iEl~~ 120 (123)
T cd08351 103 GRGVYFLDPDGHLLEIIT 120 (123)
T ss_pred eeEEEEECCCCCEEEEEe
Confidence 457799999999987764
No 339
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=23.55 E-value=6.5e+02 Score=24.02 Aligned_cols=70 Identities=21% Similarity=0.255 Sum_probs=41.8
Q ss_pred EEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCC-CCHHHHHHHHHHcCCceeeecCCHHHHHHHH
Q 042757 133 WVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQR-DTPAHLRAYLKEFNSRIVGLTGPVGAIRQMA 211 (271)
Q Consensus 133 ~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~-Dt~~~l~~~~~~~~~~~~~l~~~~~~~~~~~ 211 (271)
.+++..+.+.|+- ...+..|. ..+... +..+..|+.|+.+ ...+.++.|.+..+..+.... +.+.+.+..
T Consensus 242 ~vI~LVGptGvGK--TTTiaKLA---~~L~~~---GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~-d~~~L~~aL 312 (436)
T PRK11889 242 QTIALIGPTGVGK--TTTLAKMA---WQFHGK---KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVR-DEAAMTRAL 312 (436)
T ss_pred cEEEEECCCCCcH--HHHHHHHH---HHHHHc---CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecC-CHHHHHHHH
Confidence 3566678888863 23334443 334332 3456679999876 467788889888776655433 444444433
No 340
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.51 E-value=3.7e+02 Score=21.37 Aligned_cols=14 Identities=7% Similarity=0.064 Sum_probs=9.3
Q ss_pred CCCCChHHHHHHHHH
Q 042757 142 SSPDVGPEQVQMMAK 156 (271)
Q Consensus 142 ~Cp~~C~~el~~l~~ 156 (271)
+||+ |...-..|++
T Consensus 15 t~~~-C~~ak~iL~~ 28 (147)
T cd03031 15 TFED-CNNVRAILES 28 (147)
T ss_pred cChh-HHHHHHHHHH
Confidence 8997 9665555543
No 341
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=23.41 E-value=53 Score=25.39 Aligned_cols=24 Identities=4% Similarity=0.019 Sum_probs=15.2
Q ss_pred CCCCEEEEEEeeCCCCCChHHHHHHHHH
Q 042757 129 FLGNWVLLYFGYTSSPDVGPEQVQMMAK 156 (271)
Q Consensus 129 ~~Gk~vll~F~at~Cp~~C~~el~~l~~ 156 (271)
+.+|+++| .|||+.|+.....|-.
T Consensus 69 ~~~klvFI----~w~Pd~a~ik~KMlYA 92 (122)
T PTZ00152 69 AVNKIHFF----MYARESSNSRDRMTYA 92 (122)
T ss_pred cCCCEEEE----EECCCCCChHHhhhhH
Confidence 34665444 5899888776655533
No 342
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=23.38 E-value=95 Score=27.87 Aligned_cols=27 Identities=19% Similarity=0.533 Sum_probs=22.2
Q ss_pred Ccceee--cceeEEEEc-CCCeEEEEecCC
Q 042757 226 DDYLVE--SSHNMYLMN-PSLEVVRCFGVE 252 (271)
Q Consensus 226 ~~y~v~--~~p~~~lID-~~G~iv~~~~~~ 252 (271)
++|.|+ |...+|+|| .+|+|+|..++.
T Consensus 155 G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 155 GDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred ccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 467764 678899999 789999999765
No 343
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=23.34 E-value=2.2e+02 Score=24.21 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=26.5
Q ss_pred HHHHHHHHHHcCceeeee--ccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 204 VGAIRQMAQEYRVFFKKV--EEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 204 ~~~~~~~~~~~gv~~~~~--~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
.+.+.+++++++++.... ...+.+ ......++||++|+|+.+|
T Consensus 63 ~~~l~~~a~~~~i~iv~G~~~~~~~~---~~yNs~~~i~~~G~i~~~y 107 (255)
T cd07581 63 VSALARLARELGITVVAGMFEPAGDG---RVYNTLVVVGPDGEIIAVY 107 (255)
T ss_pred HHHHHHHHHHcCeEEEEEeeeeCCCC---cEEEeEEEECCCCcEEEEE
Confidence 345678888888755421 111110 1135678999999988776
No 344
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=23.27 E-value=2.1e+02 Score=20.36 Aligned_cols=18 Identities=11% Similarity=0.362 Sum_probs=14.5
Q ss_pred eeEEEEcCCCeEEEEecC
Q 042757 234 HNMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 234 p~~~lID~~G~iv~~~~~ 251 (271)
..+|+.||+|..+..+.+
T Consensus 94 ~~~~~~DPdG~~iEi~~~ 111 (113)
T cd08345 94 RSIYFYDPDGHLLELHAG 111 (113)
T ss_pred eEEEEECCCCCEEEEEeC
Confidence 366999999999987744
No 345
>PF01295 Adenylate_cycl: Adenylate cyclase, class-I; InterPro: IPR000274 Adenylate cyclase is the enzyme responsible for the synthesis of cAMP from ATP. On the basis of sequence similarity, it has been proposed that there are three different classes of adenylate cyclases [, ]. Class I cyclases are found in enterobacteria and related Gram-negative bacteria.; GO: 0004016 adenylate cyclase activity, 0006171 cAMP biosynthetic process
Probab=23.24 E-value=2.4e+02 Score=28.18 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=29.4
Q ss_pred ceeEEEEcCCCeEEEEecCCCCHHHHHHHHHHHhhh
Q 042757 233 SHNMYLMNPSLEVVRCFGVEYTAEELAEEISKEMKK 268 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~~~~~~~~l~~~i~~lL~~ 268 (271)
.-.+||+|..|.+....-...+.+++...|.+.+..
T Consensus 528 ~~~vYILDE~n~l~~y~~~~~~~~~lv~~i~~fy~~ 563 (604)
T PF01295_consen 528 GFNVYILDEKNSLEHYQQCDGSKEELVREINRFYQS 563 (604)
T ss_pred ceEEEEEcCCCcEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 456799999999977766778889999998887754
No 346
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=23.17 E-value=2.9e+02 Score=19.84 Aligned_cols=17 Identities=6% Similarity=0.186 Sum_probs=13.9
Q ss_pred eEEEEcCCCeEEEEecC
Q 042757 235 NMYLMNPSLEVVRCFGV 251 (271)
Q Consensus 235 ~~~lID~~G~iv~~~~~ 251 (271)
.+++.||+|+.+..+.+
T Consensus 101 ~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 101 GFRFFDPDGRLIEFSAD 117 (120)
T ss_pred EEEEECCCCCEEEEEec
Confidence 46999999999977643
No 347
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=23.04 E-value=2.4e+02 Score=22.18 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=32.3
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeC
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKAIDILDSKKNLKILPIFVTID 177 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvD 177 (271)
..|.++|-|+..|-|. |-..=..|.++.+.++.- ..+..+.+|
T Consensus 19 ~drvvViRFG~d~d~~-Cm~mDeiL~~~a~~v~~~----a~IY~vDi~ 61 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPV-CMQMDEILYKIAEKVKNF----AVIYLVDID 61 (133)
T ss_dssp SSSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT----EEEEEEETT
T ss_pred CceEEEEEeCCCCCcc-HHHHHHHHHHHHHHhhcc----eEEEEEEcc
Confidence 4689999999999986 998888889998888732 344455554
No 348
>PLN03160 uncharacterized protein; Provisional
Probab=23.03 E-value=1.2e+02 Score=25.88 Aligned_cols=11 Identities=9% Similarity=0.057 Sum_probs=5.5
Q ss_pred ccccccccccc
Q 042757 30 RTQSCSYTKSS 40 (271)
Q Consensus 30 ~~~~~~~~~~~ 40 (271)
+-|.+.++.+.
T Consensus 4 ~~~~~p~a~~~ 14 (219)
T PLN03160 4 TEQVRPLAPAA 14 (219)
T ss_pred cccCCCCCCCc
Confidence 34555555444
No 349
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=23.02 E-value=2.2e+02 Score=18.70 Aligned_cols=11 Identities=18% Similarity=0.534 Sum_probs=5.1
Q ss_pred CchhhHHHHHH
Q 042757 61 RSWSTYVIPAG 71 (271)
Q Consensus 61 ~~~~~~~~~~~ 71 (271)
|+|.+.+++++
T Consensus 29 rP~~Ll~~li~ 39 (55)
T PF11293_consen 29 RPWRLLIVLIV 39 (55)
T ss_pred chHHHHHHHHH
Confidence 45554444433
No 350
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=22.79 E-value=1.1e+02 Score=23.21 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=26.2
Q ss_pred CCCeEEEc-CCCC---eeecCcCCCCEEEEEEeeCCCCCChHHHH
Q 042757 111 GGPFTLID-TENR---LVTENNFLGNWVLLYFGYTSSPDVGPEQV 151 (271)
Q Consensus 111 ~p~f~l~d-~~G~---~v~l~~~~Gk~vll~F~at~Cp~~C~~el 151 (271)
.|.-+|-+ .+++ .+.+.++.|...+|.=-+.=|+. |+-.|
T Consensus 42 FP~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~-CkG~M 85 (118)
T PF14427_consen 42 FPESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNS-CKGKM 85 (118)
T ss_pred CchhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCch-hHHHH
Confidence 35444444 2343 34455667999999988989986 87644
No 351
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=22.42 E-value=2.7e+02 Score=20.58 Aligned_cols=17 Identities=18% Similarity=0.391 Sum_probs=14.1
Q ss_pred eeEEEEcCCCeEEEEec
Q 042757 234 HNMYLMNPSLEVVRCFG 250 (271)
Q Consensus 234 p~~~lID~~G~iv~~~~ 250 (271)
..+|+.||+|+.+..+.
T Consensus 103 ~~~~~~DP~G~~ie~~~ 119 (134)
T cd08348 103 WSIYFRDPDGNRLELFV 119 (134)
T ss_pred eEEEEECCCCCEEEEEE
Confidence 35699999999998874
No 352
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=22.42 E-value=2.9e+02 Score=19.52 Aligned_cols=40 Identities=10% Similarity=0.146 Sum_probs=23.7
Q ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecCCHHHHH
Q 042757 168 KILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTGPVGAIR 208 (271)
Q Consensus 168 ~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~~~~~~~ 208 (271)
++.+|.|.-|-...+.+.+..+.++++.++..+. +.+++.
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~-s~~eLG 66 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD-SMKKLG 66 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC-CHHHHH
Confidence 5677777766544555556666666666665554 444433
No 353
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=21.81 E-value=3.2e+02 Score=19.83 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=13.4
Q ss_pred ceeEEEEcCCCeEEEEe
Q 042757 233 SHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~ 249 (271)
...+++.||+|+.+...
T Consensus 101 ~~~~~~~DPdG~~ie~~ 117 (120)
T cd08350 101 MREFALVDPDGNLLRFG 117 (120)
T ss_pred eeEEEEECCCCCEEEee
Confidence 34679999999988654
No 354
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=21.34 E-value=2.6e+02 Score=23.72 Aligned_cols=42 Identities=21% Similarity=0.421 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCceeee---eccCCCcceeecceeEEEEcCCCeEEEEe
Q 042757 204 VGAIRQMAQEYRVFFKK---VEEEGDDYLVESSHNMYLMNPSLEVVRCF 249 (271)
Q Consensus 204 ~~~~~~~~~~~gv~~~~---~~~~~~~y~v~~~p~~~lID~~G~iv~~~ 249 (271)
.+.+.+++++++++... ....+.. ...+.++|+|+|+++.+|
T Consensus 63 ~~~l~~~a~~~~~~iv~G~~~~~~~~~----~yNs~~~i~~~G~i~~~y 107 (253)
T cd07583 63 VSFLSELAKKHGVNIVAGSVAEKEGGK----LYNTAYVIDPDGELIATY 107 (253)
T ss_pred HHHHHHHHHHcCcEEEeceEEecCCCc----EEEEEEEECCCCcEEEEE
Confidence 45667788888765431 1111111 135668999999988766
No 355
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=21.00 E-value=4.4e+02 Score=21.08 Aligned_cols=21 Identities=14% Similarity=0.110 Sum_probs=15.1
Q ss_pred EEEEEeeCCCCCChHHHHHHHH
Q 042757 134 VLLYFGYTSSPDVGPEQVQMMA 155 (271)
Q Consensus 134 vll~F~at~Cp~~C~~el~~l~ 155 (271)
-++++..+.|. .|..-+..|+
T Consensus 27 ~~~vyksPnCG-CC~~w~~~mk 47 (149)
T COG3019 27 EMVVYKSPNCG-CCDEWAQHMK 47 (149)
T ss_pred eEEEEeCCCCc-cHHHHHHHHH
Confidence 35667788998 4887666665
No 356
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.98 E-value=2.7e+02 Score=20.12 Aligned_cols=16 Identities=13% Similarity=0.414 Sum_probs=13.3
Q ss_pred eeEEEEcCCCeEEEEe
Q 042757 234 HNMYLMNPSLEVVRCF 249 (271)
Q Consensus 234 p~~~lID~~G~iv~~~ 249 (271)
..+|+.||+|+.+..+
T Consensus 100 ~~~~~~DP~G~~ie~~ 115 (120)
T cd07254 100 DKVWVTDPDGNAWEVF 115 (120)
T ss_pred ceEEEECCCCCEEEEE
Confidence 4579999999998765
No 357
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=20.86 E-value=2.8e+02 Score=22.07 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=26.9
Q ss_pred CCeeEEEEEeCCCCCCHHHHHHHHHHcCCceeeecC
Q 042757 167 LKILPIFVTIDPQRDTPAHLRAYLKEFNSRIVGLTG 202 (271)
Q Consensus 167 ~~v~~v~IsvDp~~Dt~~~l~~~~~~~~~~~~~l~~ 202 (271)
+.+.+|++|.+|.+++ -..-+|+++.|....-+.+
T Consensus 17 K~IAvVG~S~~P~r~s-y~V~kyL~~~GY~ViPVNP 51 (140)
T COG1832 17 KTIAVVGASDKPDRPS-YRVAKYLQQKGYRVIPVNP 51 (140)
T ss_pred ceEEEEecCCCCCccH-HHHHHHHHHCCCEEEeeCc
Confidence 4799999999998754 5667899998876655554
No 358
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=20.71 E-value=1.2e+02 Score=21.05 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=19.7
Q ss_pred ceeEEEEcCCCeEEEEec-CCCCHHHHHHHHHHH
Q 042757 233 SHNMYLMNPSLEVVRCFG-VEYTAEELAEEISKE 265 (271)
Q Consensus 233 ~p~~~lID~~G~iv~~~~-~~~~~~~l~~~i~~l 265 (271)
....+|+|.||.++.... ...+.+.+......+
T Consensus 15 v~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~ 48 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASL 48 (91)
T ss_dssp EEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHH
T ss_pred eeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHH
Confidence 344589999999998832 223344444444333
No 359
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.70 E-value=1.6e+02 Score=24.60 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=4.0
Q ss_pred CCeEEEcCC
Q 042757 112 GPFTLIDTE 120 (271)
Q Consensus 112 p~f~l~d~~ 120 (271)
|.++..+.+
T Consensus 40 p~Y~~e~~~ 48 (188)
T COG3117 40 PAYTMEGLD 48 (188)
T ss_pred CceeecCcc
Confidence 445544443
No 360
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=20.54 E-value=4.1e+02 Score=20.55 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCeeEEEEEeCC
Q 042757 148 PEQVQMMAKAIDILDSKKNLKILPIFVTIDP 178 (271)
Q Consensus 148 ~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp 178 (271)
..+|-.+....+.+++++ ..|....++-+|
T Consensus 23 d~eL~~~a~~~~~Lk~~g-v~v~RyNL~~~P 52 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQG-VEVERYNLAQNP 52 (123)
T ss_dssp -HHHHHHHHHHHHHHHTT--EEEEEETTT-T
T ss_pred CHHHHHHHHHHHHHHhCC-ceEEEEccccCH
Confidence 678888999999998764 345554444444
No 361
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=20.46 E-value=2.8e+02 Score=20.94 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=14.6
Q ss_pred CCCEEEEEEeeCCCCCChHHHHHHHHHH
Q 042757 130 LGNWVLLYFGYTSSPDVGPEQVQMMAKA 157 (271)
Q Consensus 130 ~Gk~vll~F~at~Cp~~C~~el~~l~~l 157 (271)
+.|+++| .|||+.|+.....+-.-
T Consensus 70 ~~k~vfI----~w~P~~a~~~~km~yas 93 (127)
T smart00102 70 KSKIVFI----FWSPDGAPVKSKMLYAS 93 (127)
T ss_pred cccEEEE----EECCCCCCHHHHHHHHH
Confidence 3455555 58888887666555333
No 362
>PHA03049 IMV membrane protein; Provisional
Probab=20.39 E-value=1.3e+02 Score=20.57 Aligned_cols=17 Identities=18% Similarity=0.399 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhhhhhh
Q 042757 73 LLGLAGIATFVHYNDER 89 (271)
Q Consensus 73 ~~~~~~~~~~~~~~~~~ 89 (271)
+++++|++.|..|+...
T Consensus 11 CVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 11 CVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 77788888888886443
No 363
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=20.39 E-value=4.6e+02 Score=21.12 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhcc-CCCeeEEEEEeCCCCCCHHHHHHHHHHcC
Q 042757 152 QMMAKAIDILDSKK-NLKILPIFVTIDPQRDTPAHLRAYLKEFN 194 (271)
Q Consensus 152 ~~l~~l~~~l~~~~-~~~v~~v~IsvDp~~Dt~~~l~~~~~~~~ 194 (271)
..|.+..+.+.+.. ...++++.|.-....++.+.+++|.+.+.
T Consensus 10 ~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~~~~~ 53 (224)
T cd06442 10 ENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELAKEYP 53 (224)
T ss_pred hhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHHHhCC
Confidence 33444444333221 13678777764444456777777876654
No 364
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=20.33 E-value=8.2e+02 Score=23.95 Aligned_cols=49 Identities=12% Similarity=0.075 Sum_probs=29.4
Q ss_pred CCEEEEEEeeCCC-CCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCC
Q 042757 131 GNWVLLYFGYTSS-PDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDT 182 (271)
Q Consensus 131 Gk~vll~F~at~C-p~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt 182 (271)
.+++-|+++++.- |..=...-..++++.++|....+ ++.+-+| ||..+.
T Consensus 47 ~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~-~i~~~~i--DP~~~~ 96 (552)
T TIGR03521 47 DDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNP-NIKFRFV--NPLEEE 96 (552)
T ss_pred CCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCC-CeEEEEe--CCCCcc
Confidence 3666666666543 32123445678888888887653 5777666 564433
No 365
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=20.22 E-value=3e+02 Score=18.97 Aligned_cols=14 Identities=7% Similarity=0.420 Sum_probs=11.1
Q ss_pred eeEEEEcCCCeEEE
Q 042757 234 HNMYLMNPSLEVVR 247 (271)
Q Consensus 234 p~~~lID~~G~iv~ 247 (271)
..+++.||+|+.+.
T Consensus 100 ~~~~~~DP~G~~iE 113 (114)
T cd07245 100 RQLFVRDPDGNRIE 113 (114)
T ss_pred cEEEEECCCCCEEe
Confidence 35699999998864
No 366
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=20.08 E-value=4.5e+02 Score=25.49 Aligned_cols=83 Identities=19% Similarity=0.295 Sum_probs=50.3
Q ss_pred CCEEEEEEeeCCC---CCChHHHHHHHHHHHHHHhhccCCCeeEEEEEeCCCCCCHHHHHHHH-HHcCCceeeecC-CHH
Q 042757 131 GNWVLLYFGYTSS---PDVGPEQVQMMAKAIDILDSKKNLKILPIFVTIDPQRDTPAHLRAYL-KEFNSRIVGLTG-PVG 205 (271)
Q Consensus 131 Gk~vll~F~at~C---p~~C~~el~~l~~l~~~l~~~~~~~v~~v~IsvDp~~Dt~~~l~~~~-~~~~~~~~~l~~-~~~ 205 (271)
.||-||+|+---- .+.-+..+..+.++....+.+ +|-++||+=.|. |-|+.+-.-+ ++-......++. +..
T Consensus 253 dkPklVfFfDEAHLLF~da~kall~~ieqvvrLIRSK---GVGv~fvTQ~P~-DiP~~VL~QLGnrIQHaLRAfTP~DqK 328 (502)
T PF05872_consen 253 DKPKLVFFFDEAHLLFNDAPKALLDKIEQVVRLIRSK---GVGVYFVTQNPT-DIPDDVLGQLGNRIQHALRAFTPKDQK 328 (502)
T ss_pred CCceEEEEEechhhhhcCCCHHHHHHHHHHHHHhhcc---CceEEEEeCCCC-CCCHHHHHhhhhHHHHHHhcCCHhHHH
Confidence 5888888874321 233457788889988888865 589999998874 5554432211 111111222232 556
Q ss_pred HHHHHHHHcCce
Q 042757 206 AIRQMAQEYRVF 217 (271)
Q Consensus 206 ~~~~~~~~~gv~ 217 (271)
.++..++.|...
T Consensus 329 avk~aa~tfr~n 340 (502)
T PF05872_consen 329 AVKAAAETFRPN 340 (502)
T ss_pred HHHHHHHhCCCC
Confidence 677777777653
Done!