BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042759
         (1055 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A2Q9L8|ACRB_ASPNC Probable ubiquitination network signaling protein acrB
           OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
           GN=acrB PE=3 SV=2
          Length = 1017

 Score = 39.3 bits (90), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 37/78 (47%), Gaps = 15/78 (19%)

Query: 100 GGVVQMTPTSRVKRALGLKMLKRSPCRRMSS-VGASSNNPTSPGSHAPNNHLHNNSNNNF 158
           G +    P +R    L    LK SP +  SS VGA+S++PTSP    P ++L        
Sbjct: 853 GALTTTAPNTRSLLGLSFPSLKSSPLQHASSPVGAASSHPTSPTQ--PPSYLQ------- 903

Query: 159 GHGHGHGGTSPAGNTNNY 176
                H  TSP GNT NY
Sbjct: 904 -----HFPTSPLGNTGNY 916


>sp|Q946J8|LHP1_ARATH Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana
           GN=LHP1 PE=1 SV=2
          Length = 445

 Score = 33.5 bits (75), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 72  NNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVKRALGLKMLKRSPCRRMSSV 131
           NN+NG G      G G GS     R NG   V      +  R +G K  K    +R    
Sbjct: 271 NNSNGAG---CSQGGGIGSEGDNVRPNGLLKVYPKELDKNSRFIGAKRRKSGSVKRFKQD 327

Query: 132 GASSNNPTSP 141
           G++SNN T+P
Sbjct: 328 GSTSNNHTAP 337


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,831,055
Number of Sequences: 539616
Number of extensions: 18325795
Number of successful extensions: 134127
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 403
Number of HSP's that attempted gapping in prelim test: 99669
Number of HSP's gapped (non-prelim): 23578
length of query: 1055
length of database: 191,569,459
effective HSP length: 128
effective length of query: 927
effective length of database: 122,498,611
effective search space: 113556212397
effective search space used: 113556212397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)