Query 042759
Match_columns 1055
No_of_seqs 87 out of 89
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 09:09:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042759.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042759hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05664 DUF810: Protein of un 100.0 4E-214 8E-219 1856.5 61.8 657 33-811 1-677 (677)
2 PF10540 Membr_traf_MHD: Munc1 98.9 5.1E-09 1.1E-13 103.8 9.8 109 884-993 3-137 (137)
3 KOG1328 Synaptic vesicle prote 98.5 0.004 8.6E-08 75.4 42.9 521 378-993 365-918 (1103)
4 PF06046 Sec6: Exocyst complex 98.3 1.4E-05 3E-10 94.4 16.8 417 499-997 80-511 (566)
5 KOG1011 Neurotransmitter relea 97.6 0.081 1.8E-06 63.9 31.2 531 357-997 472-1096(1283)
6 KOG2180 Late Golgi protein sor 94.8 0.82 1.8E-05 56.5 16.7 365 383-815 139-520 (793)
7 KOG2286 Exocyst complex subuni 94.0 18 0.00039 45.4 25.6 350 543-997 248-614 (667)
8 PF04437 RINT1_TIP1: RINT-1 / 92.5 0.9 2E-05 54.0 11.5 286 644-990 132-453 (494)
9 PF04091 Sec15: Exocyst comple 89.1 2.9 6.4E-05 47.4 11.0 249 675-985 26-280 (311)
10 PF09201 SRX: SRX; InterPro: 48.9 8.2 0.00018 39.8 1.1 26 354-379 90-115 (148)
11 PF06222 Phage_TAC: Phage tail 47.1 13 0.00027 37.8 2.1 32 915-946 70-101 (127)
12 KOG0921 Dosage compensation co 40.0 1.6E+02 0.0035 38.8 10.2 17 161-177 1255-1271(1282)
13 KOG4032 Uncharacterized conser 39.2 1.4E+02 0.0031 32.3 8.4 93 360-466 14-115 (184)
14 PF15623 CT47: Cancer/testis g 36.3 12 0.00027 42.1 0.2 23 857-879 113-135 (279)
15 PF07640 QPP: QPP; InterPro: 35.3 15 0.00031 30.1 0.4 10 739-748 4-13 (36)
16 PF12854 PPR_1: PPR repeat 31.7 39 0.00085 26.2 2.2 34 330-367 1-34 (34)
17 PF06292 DUF1041: Domain of Un 27.9 2.4E+02 0.0052 28.1 7.3 53 536-588 50-104 (106)
No 1
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=100.00 E-value=3.8e-214 Score=1856.51 Aligned_cols=657 Identities=55% Similarity=0.921 Sum_probs=616.4
Q ss_pred CCChhhHHHHHHHHhhhhccCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCccccccchhHHH
Q 042759 33 GIDSDDIRETAYEVFFTSCRSSPGFGGRNAISFYSSHDNNNNNGGGDGGVGGGSGTGSGSPTARVNGGGVVQMTPTSRVK 112 (1055)
Q Consensus 33 ~l~~~dlretayeif~~acrs~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~srvk 112 (1055)
+||+||||||||||||||||+| ++++|++.... ...||||
T Consensus 1 ~ls~~dlRetAYEi~~a~~~~s------~~~~~~~~~~~----------------------------------~~~s~~k 40 (677)
T PF05664_consen 1 GLSDDDLRETAYEILLASCRSS------GGLIYFSQSKK----------------------------------KEKSRVK 40 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHhcc------CCCccCccccc----------------------------------cchhHHH
Confidence 6999999999999999999988 45677663211 1138999
Q ss_pred HhhcccccccCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccHH
Q 042759 113 RALGLKMLKRSPCRRMSSVGASSNNPTSPGSHAPNNHLHNNSNNNFGHGHGHGGTSPAGNTNNYSTVPPPSRPRRPLTSA 192 (1055)
Q Consensus 113 ~alglk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rrp~t~~ 192 (1055)
||||||++++.. + +++|+|+|||+|++
T Consensus 41 ~~lgl~~~~~~~------------~-----------------------------------------~~~~~~~~~~~~~~ 67 (677)
T PF05664_consen 41 KALGLKSSKSGS------------S-----------------------------------------VSSPGRPRRPMTSA 67 (677)
T ss_pred HHhcCCCCCCCC------------C-----------------------------------------CCCCCCCCCcchHH
Confidence 999999987621 1 12344889999999
Q ss_pred HHHHHHhhchhhhhHHHHHHHHHHHHHhhhcccccccccHHHhhccCCCCCCChHHHHHHHHHHHHHHHhhhhcCCCccC
Q 042759 193 EIMRQQMKVTEQSDNRLRKTLMRTLVGQMGRRAETIILPLELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPSVPI 272 (1055)
Q Consensus 193 eimR~QM~VsE~~D~R~Rr~Llr~~vgq~Grr~etivlPLELL~~lk~SdF~d~~eY~~Wq~RqlkvLEaGLl~hP~vpl 272 (1055)
||||+|||||||+|+||||+|||+++||+|||+|+|+|||||||+||+|||+|++||++||||||||||||||+||++|+
T Consensus 68 e~~r~qm~vse~~d~r~r~~l~~~~~~~~g~r~e~~~lpLeLl~~~~~sdF~d~~ey~~WqkRql~~Le~gL~~hp~~~l 147 (677)
T PF05664_consen 68 EIMRVQMRVSEQMDARIRRALLRAAAGQVGRRAESIVLPLELLQQLKPSDFSDEKEYEQWQKRQLKVLEAGLLNHPSVPL 147 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHhhcccccccccHHHHhhCCHhhCCCHHHHHHHHHHHHHHHHHHHHhCcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHh-----cccCCCCCCCchHHHHHHHHHHhhhhcc-CCCCCCCCccccCCCCCchHHHHHHHHhhc
Q 042759 273 DKSNNFAIRLREIVRA-----SETKPIDTGKNSDTMRALCNSVVSLSWR-SANGTPTDVCHWADGFPLNVHLYIALLQSI 346 (1055)
Q Consensus 273 dks~~~a~rLR~ii~~-----a~~~~~dtgk~se~mr~L~~av~sLA~R-s~~G~~~e~CHWADGypLNvrLYe~LL~ai 346 (1055)
|++|.+|++||++|+. ++.+|++||||+|+||+||++|++|||| +.+|.++|+||||||||||+||||+||++|
T Consensus 148 ~~s~~~a~~lr~~~~~~~~~~~~~~~~~~~~~se~~~~l~~~~~~La~r~~~~~~~~e~chWadgyplN~~LYe~LL~~~ 227 (677)
T PF05664_consen 148 DKSNASAQRLRQIIAKIREDEAEDKPIDTGKNSESMRALRSAVISLAWRPSRDGSSGETCHWADGYPLNVRLYEKLLFSV 227 (677)
T ss_pred cccchhHHHHHHHHHhcccccccCCcCccccccHHHHHHHHHHHHHhcCCCCCCCCCcccccccCCCccHHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999999 557789999999999999999999999999
Q ss_pred cccCCCcchhhhHHHHHHHHHhhhhccCCchhhhHHHHHHHhHHhhhhcCCChhHHHHHHHHHHHHHHHhhCCCCcchhH
Q 042759 347 FDFRDETLVLDEVDELLELMKKTWSTLGINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIY 426 (1055)
Q Consensus 347 FD~~dEg~vidEvDElLELiKkTW~iLGI~q~lHn~CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eVa~Dak~~~rd~~y 426 (1055)
||++|||+||||||||||+|||||++||||||+||+||+||||||||+|| |+|||+||++||+||++|+|+.++|+.|
T Consensus 228 FD~~de~~vidE~dEvlellK~tW~~LGIt~~lHn~cf~WVlF~qyv~tg--e~~LL~~a~~~L~ev~~d~~~~~~~~~y 305 (677)
T PF05664_consen 228 FDILDEGQVIDEVDEVLELLKKTWSILGITQTLHNVCFAWVLFRQYVATG--EPDLLKAAIQQLQEVAKDAKRATKDPLY 305 (677)
T ss_pred hcccccchHHhhHHHHHHHHHHHhHHhCCCHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhccccccchhh
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999977999999
Q ss_pred HH------------HHHHHHHhHHHHHHHHhhhhHhhhcCCcchhhhhHHhHHHHHhhhhccccccccCCCCCCCccccc
Q 042759 427 VR------------MLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVM 494 (1055)
Q Consensus 427 ~k------------~L~S~L~sI~~W~ekrLldYH~~F~~g~~~~me~llsla~~aakiL~ed~s~~~~~~~~~~~~~~~ 494 (1055)
++ +|+|+|++|++|+||||+|||+||++++++.||++++|++.++||++||++.+. +. ...
T Consensus 306 ~~sl~~~~~~~~l~ll~s~L~si~~W~ekrL~dYH~~f~~~~~~~me~llsl~~~a~~il~ed~~~~~----~~-~~~-- 378 (677)
T PF05664_consen 306 LKSLRCSVETSDLSLLSSVLSSIQGWAEKRLLDYHDHFSEGNIGVMEGLLSLAVSAAKILGEDVSREY----RR-KRS-- 378 (677)
T ss_pred hhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhhchhHHH----Hh-hhc--
Confidence 99 999999999999999999999999999998999999999999999999988553 22 111
Q ss_pred ccccchhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccchhHHHHHH
Q 042759 495 DSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVT 574 (1055)
Q Consensus 495 d~a~~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~~L~~LA~e~~~LA~~E~~~FSPiLkrWhP~A~~VAa~t 574 (1055)
.++++|||+|||||||+||+|+.+..+.+. +.++.|+|++||+||++||++|+++|||||+||||+|++|||+|
T Consensus 379 ~~~~~~ie~YIrsSi~~Af~~~~~~~~~~~------~~~~~~~L~~LA~ei~~la~~e~~~FsPiLk~whP~a~~VAa~~ 452 (677)
T PF05664_consen 379 KVARSRIESYIRSSIKAAFARMASSVDSRS------DSEPSHVLAQLAKEIKELAKKEKEVFSPILKRWHPNAAGVAAAT 452 (677)
T ss_pred cchHHHHHHHHHHHHHHHHHhhhhhhhhcc------cccchHHHHHHHHHHHHHHHHhHHhcCchhcccCchHHHHHHHH
Confidence 278999999999999999999988877663 78899999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHhhcCCCChhHHHHHHHhhhHHHHHHHHhhhcccccCCCCcccccccCcchhhHHhHHHHHHHHHHHH
Q 042759 575 LHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERI 654 (1055)
Q Consensus 575 LH~cYG~~LKqfL~g~s~LT~d~v~VL~AAd~LEk~Lvq~~vEdsvd~ddggksvirem~PYeve~~i~~Lv~~Wi~~ql 654 (1055)
||.|||++|||||+++++||+|+++||+||++|||+||||+ ++|||||||+++|+|+||++|+++++||++||++|+
T Consensus 453 LH~~Yg~~Lk~~L~~~~~LT~d~v~VL~aA~~LEk~Lvq~~---~~~~edggk~~~rem~Py~vE~~i~~lv~~Wi~~~~ 529 (677)
T PF05664_consen 453 LHSCYGNELKQFLSGVTHLTPDVVEVLQAADKLEKALVQMV---SVDCEDGGKSLIREMPPYEVESLISNLVKRWIQEQL 529 (677)
T ss_pred HHHHHHHHHHHHHcccccCCHHHHHHHHHHHHHHHHHHHHH---HhhccccccccccCCCceeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 788999999999999999999999999999999999
Q ss_pred hhhhhHHHhhhhccccCCCCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-hccCCC
Q 042759 655 NRGKECYLRAKESETWNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-ASCGAR 733 (1055)
Q Consensus 655 ~~l~ewv~Ra~q~E~W~P~S~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk 733 (1055)
++++|||+||++||+|+|+|++|+||+|+||||||++||||+||+||+||+++++++|++|||++||+|+++| ++||+|
T Consensus 530 ~~l~ewv~ra~~qE~W~P~S~~e~hs~SvVEvfri~~eTvd~ff~L~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk 609 (677)
T PF05664_consen 530 ERLNEWVDRAIKQEKWNPRSKEERHSPSVVEVFRIFNETVDQFFQLPWPMHADFLQALSKGLDKALQRYCEKVEQSCGSK 609 (677)
T ss_pred HHHHHHHHHHHhhccCCcCCCCCCCcchHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred CcccCCCCCCcccccCcchhhhhhhcCCCCC-cccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhh
Q 042759 734 QSYLPTLPPLTRCNRDSKFSKLWKKASPCTV-AVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDK 811 (1055)
Q Consensus 734 ~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~-p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk 811 (1055)
++||||+|||||||++++|+++|||+.++.. +.+.... ..+++++|+|||||||||||++||++|||
T Consensus 610 ~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~~~~~~~~-----------~~~~~~~~~lcVrLNtL~yil~qL~~LEK 677 (677)
T PF05664_consen 610 QSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTNPDERFSS-----------KINSQFTPRLCVRLNTLEYILSQLDKLEK 677 (677)
T ss_pred cccCCCCchhhhhhhhhhHHHHHHHHhcCcccccccccc-----------CcccCccCceeeeecHHHHHHHHHHhhcC
Confidence 9999999999999999999999999965544 4433311 13499999999999999999999999997
No 2
>PF10540 Membr_traf_MHD: Munc13 (mammalian uncoordinated) homology domain; InterPro: IPR019558 Mammalian uncoordinated homology 13 (Munc13) proteins constitute a family of three highly homologous molecules (Munc13-1, Munc13-2 and Munc13-3) with homology to Caenorhabditis elegans unc-13p. Munc13 proteins contain a phorbol ester-binding C1 domain and two C2 domains, which are Ca2+/phospholipid binding domains. Sequence analyses have uncovered two regions called Munc13 homology domains 1 (MHD1) and 2 (MHD2) that are arranged between two flanking C2 domains. MHD1 and MHD2 domains are present in a wide variety of proteins from Arabidopsis thaliana (Mouse-ear cress), C. elegans, Drosophila melanogaster (Fruit fly), Mus musculus (Mouse), Rattus norvegicus (Rat) and Homo sapiens (Human), some of which may function in a Munc13-like manner to regulate membrane trafficking. The MHD1 and MHD2 domains are predicted to be alpha-helical. ; PDB: 3SWH_A.
Probab=98.91 E-value=5.1e-09 Score=103.84 Aligned_cols=109 Identities=28% Similarity=0.462 Sum_probs=78.0
Q ss_pred cchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH-H-----------------------cCCCCcccccc
Q 042759 884 RVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVL-L-----------------------AGGSSRVFYRS 939 (1055)
Q Consensus 884 RI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VL-L-----------------------aGGPsRaF~~~ 939 (1055)
-|.|+++.||.+|..+++.+.+.+-.+|+.++-+..+..+--.+ | .+|..|.-++.
T Consensus 3 ai~PL~dyLd~nL~~L~~~L~~~~f~~vl~~lW~~vl~~l~~llvlP~ls~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~~ 82 (137)
T PF10540_consen 3 AIEPLMDYLDSNLSILASNLEKENFKRVLKELWKVVLETLEELLVLPPLSDKPMLGLLQSAVSSLSSHGIGGSQRPLTPK 82 (137)
T ss_dssp HHHHHHHHHCHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHTTS-G------------GG-TTS-------------T
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHhhcccccCCCCCHH
Confidence 48999999999999999999999999999999999998888888 3 35888999999
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCChhHHHHHH--HHhHHHHHhhhcccHHHHHHHH
Q 042759 940 DHEMIEEDFDSLKRVFCTCGEGLIVEDVVDRE--AETVDGVIGLMGQQTEQLIEDF 993 (1055)
Q Consensus 940 D~~miEEDf~~LK~lF~a~GeGL~p~evVeke--a~~v~~Vl~Lm~~~Te~LIe~f 993 (1055)
.++.++.-++.|++||.|+|+|| |.+..|+- -...+.++.++.++|++||+.|
T Consensus 83 q~~~l~~~L~~L~~FFhA~G~Gl-~~~~L~ks~~yq~L~~~l~ly~~sT~~LI~~f 137 (137)
T PF10540_consen 83 QCDRLFKWLDTLKDFFHAEGNGL-PLEFLEKSPEYQSLRYILSLYDQSTDELIEEF 137 (137)
T ss_dssp CHHHHHHHHHHHHHHHHCCCTS---HHHHHC-HHHHHHHHHHHHT-----------
T ss_pred HHHHHHHHHHHHHHHHhCCCCCC-CHHHHccCHHHHHHHHHHHHhcCCHHHHHhhC
Confidence 99999999999999999999999 99999544 4489999999999999999976
No 3
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.50 E-value=0.004 Score=75.42 Aligned_cols=521 Identities=15% Similarity=0.149 Sum_probs=294.9
Q ss_pred hhhHHHHHHHhHHhhhhcCCChhHHHHHHHHHHHHHHHhhCCCC-cchhHHHHHHHHHHhHHHHHHHHhhhhHhhhcCCc
Q 042759 378 PIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPD-REAIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGT 456 (1055)
Q Consensus 378 ~lHn~CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eVa~Dak~~~-rd~~y~k~L~S~L~sI~~W~ekrLldYH~~F~~g~ 456 (1055)
.+|-+.--|+-|.....|=-.++.+|-- .|++|.+.=++.+ -+...-..|.-.+++....|-.++..--++|+-.|
T Consensus 365 dlhlAm~rw~a~~~~~~s~~ld~s~L~~---lL~di~~~W~~~~qL~~e~E~~LaDs~s~F~e~~l~~~r~hRd~Fpa~n 441 (1103)
T KOG1328|consen 365 DLHLAMCRWLAFHSMIHSIDLDFSLLYK---LLQDIIDKWQPLTQLDKEEEDMLADSFSSFDEYCLRMMREHRDKFPASN 441 (1103)
T ss_pred HHHHHHHHHHHHHHhccCCCCCHHHHHH---HHHHHHHhhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 5788888999999999988788888754 3444544443322 34444567788888999999999999999999888
Q ss_pred chhhhhHHhHHHHHhhhhccccccccCCCCCCCcccccccccchhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcch
Q 042759 457 VGQIENLLPLALLASKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETG 536 (1055)
Q Consensus 457 ~~~me~llsla~~aakiL~ed~s~~~~~~~~~~~~~~~d~a~~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~ 536 (1055)
..+.+-+=+|-- +-..|.+ ...+ .+-|-- -.--.--|+..++.+-+.=+.++|++.. +.++.-
T Consensus 442 ~~s~~rle~Llk-Clg~L~~--~~~~----~~~cPf-~~~~~~~~~~al~kg~~~w~dr~~~~~q---------~~~~p~ 504 (1103)
T KOG1328|consen 442 RNSGERLESLLK-CLGALRE--SPFY----QKYCPF-KRPFHAHLESALVKGAEDWIDRSIESVQ---------DPDPPK 504 (1103)
T ss_pred CchHHHHHHHHH-HHHHHhc--Ccch----HhhCCC-CccchHHHHHHHHhhhHHHHHHHHhccC---------CCCCch
Confidence 764444443311 1112222 1010 000100 0011233556666666666777887754 223322
Q ss_pred HHHHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHhHHH-----HHHHHHhhcCCCChhHHHHHHHhhhHHHHH
Q 042759 537 ALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGA-----VLKQYLAETGTLKNDTVDVLQRAGKLEKVL 611 (1055)
Q Consensus 537 ~L~~LA~e~~~LA~~E~~~FSPiLkrWhP~A~~VAa~tLH~cYG~-----~LKqfL~g~s~LT~d~v~VL~AAd~LEk~L 611 (1055)
-+.++-.-+.++-..- .+=|+.+|.--|- -++||=.-+ |+++-.-+.+ .+--..+
T Consensus 505 l~~~~~~i~~d~q~~~----------------~~Yaalf~~v~~idyf~lt~~q~drlv---~Ee~~s~~~~-~~~~~~~ 564 (1103)
T KOG1328|consen 505 LLLQLLNIVNDQQSRF----------------LHYAALFREVARIDYFQLTLNQFDRLV---TEELTSELMS-EKKMDLK 564 (1103)
T ss_pred hHHHHHHHHHHHHHHH----------------HHHHHHHHHhhccceeeeeHHHHHHHH---HHHHHHHHhc-hhhhhhh
Confidence 3333333333333221 1112233322221 235554444 3444333333 1111223
Q ss_pred HHHhhhc--ccccCCCCccc------------------ccccCcchhhHHhHHHHHHHHHHHHhhhhhHHHhhhhccccC
Q 042759 612 VQMVVED--SAECDDGGKGI------------------VREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWN 671 (1055)
Q Consensus 612 vq~~vEd--svd~ddggksv------------------irem~PYeve~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E~W~ 671 (1055)
-||.+.. ...-||+-=.+ +|.+.--+...+.-+-||.|+.---++.+--+.-+++...=.
T Consensus 565 sq~~ls~~~~~pv~~~lfeL~l~l~~f~~l~~~~~a~~~r~lals~~ha~F~p~ik~w~~V~k~kAl~Rv~~a~~mD~~~ 644 (1103)
T KOG1328|consen 565 SQMRLSAAQDPPVEDDLFELMLILMAFVELRNYRLANRVRVLALSEWHAIFNPGIKKWLEVAKEKALARVHLACQMDMPI 644 (1103)
T ss_pred hhhhcccccCCCccccHHHHHHHHHHHHHHHhhcccCCCcchhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3443311 11112211000 111111234566778899999988888888899999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhcCCCCC---ChhHHHHHHHHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccc
Q 042759 672 PKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGI---TDDLVHDLADGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCN 747 (1055)
Q Consensus 672 P~S~~e~~A~SaVEvlRiveETvD~FF~lpvp~---~~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~ 747 (1055)
|.+..-+|..|+++.--+++..-+=.=-+..|- ...+=.-|++-+=.+.-.|+.++ +.-|..+.|-
T Consensus 645 ~~~~~~RhSSS~~d~~~~l~~i~efW~rl~wpD~~~ai~~~~QL~dvVCea~~~Yt~li~sa~~dtq~~~---------- 714 (1103)
T KOG1328|consen 645 STSSDMRHSSSHIDICHILEQITEFWERLDWPDAGLAIEYTRQLVDVVCEAVTVYTQLIISAEGDTQELQ---------- 714 (1103)
T ss_pred ccchhhccccchhhHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh----------
Confidence 999999999999998877765443333344442 23344556666667777788887 6655433321
Q ss_pred cCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhhhcccCCCccCCccccc
Q 042759 748 RDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRF 827 (1055)
Q Consensus 748 ~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~ 827 (1055)
.|. | +.-..-|||-||-..|++.-++.-+|+.... + +...++
T Consensus 715 ---a~~---------------p----------------~~~s~~lCv~iNNvE~VRrsl~~~~k~~~~p-~---~~~~~~ 756 (1103)
T KOG1328|consen 715 ---AFI---------------P----------------SQLSHLLCVAINNVEQVRRSLNITEKLHMDP-R---SRLNGN 756 (1103)
T ss_pred ---hcC---------------h----------------HHHHHHHHHHHccHHHHHHHHhHHhhhccCc-c---cccCcc
Confidence 010 0 1112347999999999999999999975432 1 111110
Q ss_pred cccccCCCCCchhHHHHHHHHHHHHHHHHhhceeeeeeccchhhHhhhccCc--cccccchHHHHHHHHHHHHHHHHhhh
Q 042759 828 ANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGD--VANARVRPALRTLKQNLTLLSAILTD 905 (1055)
Q Consensus 828 ~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~Dlr~~f~d~LY~g~--Va~aRI~p~L~~Ldq~L~~i~~~l~d 905 (1055)
+.- -.......+-+-.-+.+-|++|--..+-|.+ -|++--.++--+..+ ..+--|.|+++.||-.|..+-+-+.-
T Consensus 757 -~~l-~~~~~n~les~~~~~~~e~~ri~~~Lt~~m~-~~~~K~vfHlawSPds~~~~~a~~PL~~yLD~~La~ln~~Ll~ 833 (1103)
T KOG1328|consen 757 -HML-KSEIENRLESCESNICSEIDRIVGLLTERML-PQMKKHVFHLAWSPDSQLVEDALKPLTDYLDIELASLNKNLLH 833 (1103)
T ss_pred -ccC-chHHHHHHHHHHHHHHHHHHHHHHHhhHHhh-HHHHHHHHheecCccccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 000 0011222233333334444444444443332 344433323223322 12346888888888888888777666
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHHH-HHhHHHHHhhhcc
Q 042759 906 KAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDRE-AETVDGVIGLMGQ 984 (1055)
Q Consensus 906 ~~r~~vv~~vMkAsfdafL~VLLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVeke-a~~v~~Vl~Lm~~ 984 (1055)
+==.|+...+-+-.+...++ +=|--|--.+.=+.-+-|-++.|-+||.|.|+|| +-|-.+.+ -...+++|.|...
T Consensus 834 ~Nf~Rvl~a~w~~vl~~l~~---~~g~n~d~~~~Fy~Rl~eal~~Lv~FFHAeGqGL-~le~L~t~~~~rl~~~L~lhkt 909 (1103)
T KOG1328|consen 834 RNFLRVLSAQWSIVLKLLRE---CVGENVDMEPAFYHRLFEALHVLVEFFHAEGQGL-SLEALDTNPEHRLVKILSLHKT 909 (1103)
T ss_pred hhHHHHHHHHHHHHHHHHHH---HhcccCCCChHHHHHHHHHHHHHHHHHhccCCCc-chHhhccCcHHHHHHHHHhcCC
Confidence 65555555554444444422 2344444444445667788999999999999999 76665544 3468999999999
Q ss_pred cHHHHHHHH
Q 042759 985 QTEQLIEDF 993 (1055)
Q Consensus 985 ~Te~LIe~f 993 (1055)
+|++|||+|
T Consensus 910 ~T~~lIe~f 918 (1103)
T KOG1328|consen 910 PTEQLIEKF 918 (1103)
T ss_pred CHHHHHHHH
Confidence 999999998
No 4
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=98.30 E-value=1.4e-05 Score=94.42 Aligned_cols=417 Identities=15% Similarity=0.185 Sum_probs=200.0
Q ss_pred chhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccchhHHHHHHhHHh
Q 042759 499 DRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQC 578 (1055)
Q Consensus 499 ~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~~L~~LA~e~~~LA~~E~~~FSPiLkrWhP~A~~VAa~tLH~c 578 (1055)
++.-.-|+.|+++.|.+.-+....+.. -......|-.+-+|+...-..-...|-| .|.-+..-+. .+|.|
T Consensus 80 ~~~~~~l~~sv~~~~~~~~~~~~~~~~-----l~~~l~~l~~~~~DL~~v~~~~~~cfPp---~~~I~~~y~~--~YH~~ 149 (566)
T PF06046_consen 80 QKFFEALRESVEERFEQAEEREENKSW-----LARHLEALRWVLEDLQVVKDDVVPCFPP---EYDIFNTYVS--MYHNA 149 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCchH-----HHHHHHHHHHHHHHHHHHHHhCcccCCC---CChHHHHHHH--HHHHH
Confidence 445556777777777744443322210 0001122223334444333222345555 3555443332 56777
Q ss_pred HHHHHHHHHhhcCCC-ChhHHHHHHHhhhHHHHHHHHhhhcccccCCCCcccccccCcchhhHHhHHHHHHHHHHHHhhh
Q 042759 579 YGAVLKQYLAETGTL-KNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRG 657 (1055)
Q Consensus 579 YG~~LKqfL~g~s~L-T~d~v~VL~AAd~LEk~Lvq~~vEdsvd~ddggksvirem~PYeve~~i~~Lv~~Wi~~ql~~l 657 (1055)
....|++.... .| ..|.+.+|.=.+.-.. ++-+ -+... ...+.|.=.++.+..|+.+++..-..++
T Consensus 150 l~~~l~~l~~~--~l~~~~ll~ll~W~~~Y~~----~m~~------~~l~~-~~~l~plL~~~~~~~L~~~Yl~~~~~~~ 216 (566)
T PF06046_consen 150 LSDHLQELISP--DLEANDLLSLLSWVNTYPS----IMGH------PDLAI-KEQLGPLLPDEKLEELEDDYLSRIQKKM 216 (566)
T ss_dssp -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccC--CCCHHHHhhheechhhChH----hhcC------Ccccc-hhhccCCCChhHHHHHHHHHHHHHHHHH
Confidence 66666655222 22 3444555533333333 2211 11111 4567888889999999999999999999
Q ss_pred hhHHHhhhhccc--c----CCCC-CC-CCCchhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-h
Q 042759 658 KECYLRAKESET--W----NPKS-KS-EPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-A 728 (1055)
Q Consensus 658 ~ewv~Ra~q~E~--W----~P~S-~~-e~~A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v-~ 728 (1055)
++|+++++++|. | .|.. .. .-|.+..+.||+||++.++-- --.....++...+..+-+.++.|-..+ .
T Consensus 217 ~eW~~n~l~~E~~~w~~~~~Pe~~~dg~y~t~~~~difqmi~qql~va---~~~l~~~v~~~v~~~~~~~l~~~~~~~~~ 293 (566)
T PF06046_consen 217 KEWMDNILEQEVKDWSEEKEPEEDEDGYYHTPLPVDIFQMINQQLDVA---SESLQGKVLQRVLEELANFLKSYQDAWQE 293 (566)
T ss_dssp HHHHHHHHHHHHHHHHC-S--EE-TTS-EE-HHHHHHHHHHHHHHHHH---HHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCCcCCCCCeecCcHHHHHHHHHHHHHHH---HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999994 4 3332 22 234488999999999999988 223566778888888888888887665 3
Q ss_pred ccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhh
Q 042759 729 SCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHS 808 (1055)
Q Consensus 729 ~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~ 808 (1055)
-+ +..+ .+...+ .+. ......++.||.=+|.-....+.++.
T Consensus 294 ~~------------------~~~~---~~~~~~--~~~----------------~~~~~~~eyliA~~N~~~~~~~~~~~ 334 (566)
T PF06046_consen 294 FK------------------EEHF---KDRSSV--KPK----------------ENPPGYLEYLIAVANNCLRCRDYVES 334 (566)
T ss_dssp HH------------------HHHH---HHHHHH--HHC----------------C--S-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH------------------HHHH---Hhhhcc--ccc----------------ccccchHHHHHHHhccHHHHHHHHHH
Confidence 33 1111 010000 000 01144578899999999999999999
Q ss_pred hhhhcccCCCccCCccccccccccCCCCCchhHHHHHHHHHHHHHHHHhhceeeeeeccchhhHhhhccCc-cccccchH
Q 042759 809 LDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGD-VANARVRP 887 (1055)
Q Consensus 809 LEk~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~Dlr~~f~d~LY~g~-Va~aRI~p 887 (1055)
++..+.......-+ .. +. ......-++--..+..+++.+++. ||.|+...| ..|+... ..+.=++.
T Consensus 335 l~~~~~~~~~~~~~--~~---~~--~~~~~~~~~~~~l~~~~~~~L~~~-----if~Dl~p~~-~~Lft~~W~~~~~~~~ 401 (566)
T PF06046_consen 335 LEQKFEEKVSQKYM--ER---IS--SDLEELMDGFDDLAKECCQYLLEE-----IFNDLKPHF-KKLFTKKWYSGEAVDT 401 (566)
T ss_dssp HHHHHHTTS-HHHH--HH---HH--HHHCTTHHHHHHHHHHHHHHHHHH-----HHHCTHHHH-CTTTSGGGCTS-HHHH
T ss_pred HHHhcccccchHHH--hh---hh--hhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhHHHH-HHhCcCcCcCcchHHH
Confidence 99877433321000 00 00 011222233334455666666664 788987766 5554332 22244667
Q ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHcCCC-C--cccccchhhhHHHHHHHHHHHHhhCCCCCCh
Q 042759 888 ALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGS-S--RVFYRSDHEMIEEDFDSLKRVFCTCGEGLIV 964 (1055)
Q Consensus 888 ~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VLLaGGP-s--RaF~~~D~~miEEDf~~LK~lF~a~GeGL~p 964 (1055)
++.+++..+..+...++......++.+++...+--|+.-|+-+.. + +-=..+=.+.|..|.+.|+++|-.-+ .
T Consensus 402 I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F~~~~----~ 477 (566)
T PF06046_consen 402 ICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQLKSFFSKLG----S 477 (566)
T ss_dssp HHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHHHHHHHHHHT----H
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHhc----c
Confidence 777788888777777888889999999999999999999999764 2 23345556889999999999999888 6
Q ss_pred hHHHHHHHHhHHHHHhhh-cccHHHHHHHHHHhh
Q 042759 965 EDVVDREAETVDGVIGLM-GQQTEQLIEDFTILS 997 (1055)
Q Consensus 965 ~evVekea~~v~~Vl~Lm-~~~Te~LIe~f~~a~ 997 (1055)
.+.|.......+.+++++ ..+++.+...+....
T Consensus 478 ~~~~~~~~~~l~~l~~ll~~~d~~~i~l~~~~l~ 511 (566)
T PF06046_consen 478 KSEVKSSFDVLEDLLELLRLEDPEMIKLEVSSLL 511 (566)
T ss_dssp HHHHHHHHHHHHHHHHHH-HS-CCCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777888889999999999 666666655555553
No 5
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.64 E-value=0.081 Score=63.85 Aligned_cols=531 Identities=15% Similarity=0.256 Sum_probs=297.8
Q ss_pred hhHHHHHHHHHhhhhccCCch-hhhHHHHHHHhHHhhhhcCCChhHHHHHHHHHHHHH-HHh-hCC--CCcc--------
Q 042759 357 DEVDELLELMKKTWSTLGINR-PIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAEL-AND-AKK--PDRE-------- 423 (1055)
Q Consensus 357 dEvDElLELiKkTW~iLGI~q-~lHn~CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eV-a~D-ak~--~~rd-------- 423 (1055)
|-+.||.+-.---+.|=.|-| |-|-+| |-.+|..-| -|..+..-.+-++-. |.. |.. ...|
T Consensus 472 etaqeivdefamrygiesiyqamthfac----l~skymcpg--vpavmstllaninayyahttastnvsasdrfaasnfg 545 (1283)
T KOG1011|consen 472 ETAQEIVDEFAMRYGIESIYQAMTHFAC----LSSKYMCPG--VPAVMSTLLANINAYYAHTTASTNVSASDRFAASNFG 545 (1283)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH----HhhcccCCC--cHHHHHHHHHhhhHHhhccccccccCcchhhhhhccc
Confidence 346777777666666666665 557777 457899999 466655444333211 110 100 0112
Q ss_pred -hhHHHHHHHHHHhHHHHHHHHhhhhHhhhcCCcchhhhhHHh-------HHHHHhhhhccccccccCCCCCCCcccccc
Q 042759 424 -AIYVRMLSSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLP-------LALLASKILGEDVSITEGGLERGDTKVVMD 495 (1055)
Q Consensus 424 -~~y~k~L~S~L~sI~~W~ekrLldYH~~F~~g~~~~me~lls-------la~~aakiL~ed~s~~~~~~~~~~~~~~~d 495 (1055)
.-++|+|...-+|+. --|..|..+|+.+....++.+-+ +...--|++- .. .+ .
T Consensus 546 kerfvklldqlhnslr----idls~yrnnfpassperlqdlkstvdlltsitffrmkvqe--lq-sp----p-------- 606 (1283)
T KOG1011|consen 546 KERFVKLLDQLHNSLR----IDLSAYRNNFPASSPERLQDLKSTVDLLTSITFFRMKVQE--LQ-SP----P-------- 606 (1283)
T ss_pred HHHHHHHHHHHhhhhe----eeHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hc-CC----C--------
Confidence 224677776666553 46889999999887664554433 2222222221 00 11 1
Q ss_pred cccchhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhcccccccccc--chhHHHHH
Q 042759 496 STGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQLAKEAEDLALRERECFSPILKRWHS--IAAGVAAV 573 (1055)
Q Consensus 496 ~a~~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~~L~~LA~e~~~LA~~E~~~FSPiLkrWhP--~A~~VAa~ 573 (1055)
-+..-|..++..-+...|.-+.+++-..- + ........--.|.--+-.+-+.++++|.|.|.++-- .-+-++|-
T Consensus 607 rasqvvkdcvkaclnstye~ifnnchely-s---~s~~nldfw~klit~ivsiieedknsytp~lnqfpqelnvgk~sae 682 (1283)
T KOG1011|consen 607 RASQVVKDCVKACLNSTYEYIFNNCHELY-S---PSITNLDFWYKLITLIVSIIEEDKNSYTPALNQFPQELNVGKLSAE 682 (1283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---ccccchhhHHHHHHHHHHHHHhccccCChhhhhChhhhccccchHH
Confidence 12333555555555555555555531110 0 011111122223333455667788999999987532 24567889
Q ss_pred HhHHhHHHHHHHHHhhcCCCChhHHHHHHHhhhHH-----HHHHHHhhhcccccCCCCcccccccCcchhhHHhHHHHHH
Q 042759 574 TLHQCYGAVLKQYLAETGTLKNDTVDVLQRAGKLE-----KVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRL 648 (1055)
Q Consensus 574 tLH~cYG~~LKqfL~g~s~LT~d~v~VL~AAd~LE-----k~Lvq~~vEdsvd~ddggksvirem~PYeve~~i~~Lv~~ 648 (1055)
++-..|.+-+|--|+.-.. ...-+.||-+- |.|-.-.|.|-. .=|+-|.|.+ .-..++|++
T Consensus 683 vmw~lfaqdmk~aleeh~k-----~~~cksadymnl~fkvk~ly~eyv~dlp----~~k~~vpeyp-----awf~pfv~q 748 (1283)
T KOG1011|consen 683 VMWSLFAQDMKYALEEHAK-----KKLCKSADYMNLHFKVKWLYNEYVADLP----TYKSSVPEYP-----AWFEPFVMQ 748 (1283)
T ss_pred HHHHHHHHHHHHHHHHHhh-----hccccCcchhheeeehhhhHHHHHhhch----hhhccCCCch-----HHHHHHHHH
Confidence 9999999999988875421 12222233221 233322221110 0112222333 346789999
Q ss_pred HHHHHHhhhhhHHHhhhhccc---cCCCCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCCh---hHHHHHHHHHHHHHHH
Q 042759 649 WIQERINRGKECYLRAKESET---WNPKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITD---DLVHDLADGLQQLFRE 722 (1055)
Q Consensus 649 Wi~~ql~~l~ewv~Ra~q~E~---W~P~S~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~---~ll~~L~~Gld~~lq~ 722 (1055)
|++|.-+.-.+.+.-|++-.. +.--|.+.-|.-|+|+||--.+..++-.=.+.-|-+. ...+....-|.+.|-.
T Consensus 749 wldenee~s~dflrga~e~dkkdgf~qtseha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllq 828 (1283)
T KOG1011|consen 749 WLDENEEVSMDFLRGALERDKKDGFQQTSEHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQ 828 (1283)
T ss_pred HhccchHHHHHHHHhHhhcccccCccccchhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999988887788777776542 3344567788899999999888887777777766443 3345666777777777
Q ss_pred HHHHHhccCCCCcccCCCCCCcccccCcchhhhh-hhcCCCCCcccccccccCCCCCCCCCCCCcccccchhhhhhhHHH
Q 042759 723 YTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLW-KKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHY 801 (1055)
Q Consensus 723 Y~~~v~~cGsk~~liP~lPpLTRc~~~s~~~~~~-Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~y 801 (1055)
|...++.= |-+.- |-+.| |+=+|..|-
T Consensus 829 yadivskd---------------------fp~y~~keklp-------------------------------cilmnnvqq 856 (1283)
T KOG1011|consen 829 YADIVSKD---------------------FPKYCHKEKLP-------------------------------CILMNNVQQ 856 (1283)
T ss_pred HHHHHhhh---------------------hhhhhhhccCC-------------------------------eeeeccHHH
Confidence 87665221 11111 11111 888888888
Q ss_pred HHHhHhhhhhhcccCCCccCCccccccccccCCCCCchhHHHHHHHHHHHHHHHHhhceeeeee------ccchhh----
Q 042759 802 LVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFL------DSNSVF---- 871 (1055)
Q Consensus 802 i~~~l~~LEk~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~------Dlr~~f---- 871 (1055)
++-||+.+=+.+- .. +. ..........-+.-.++-.+.++.+.+...--+ .|.+.+
T Consensus 857 lrvqlekmfeamg----gk----el------d~ea~d~lk~lqvkln~vldels~~f~tsfqphi~e~v~qmg~il~qvk 922 (1283)
T KOG1011|consen 857 LRVQLEKMFEAMG----GK----EL------DEEAGDVLKELQVKLNSVLDELSAVFVTSFQPHIHECVIQMGDILVQVK 922 (1283)
T ss_pred HHHHHHHHHHHhc----ch----hh------hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHhhhc
Confidence 8888776544320 00 00 001112222223333333444433322211000 001111
Q ss_pred HhhhccCccc---cccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH----------------------
Q 042759 872 YESLYVGDVA---NARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMV---------------------- 926 (1055)
Q Consensus 872 ~d~LY~g~Va---~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~V---------------------- 926 (1055)
=-++-...|+ ++=++|+..-||.+|...+.+-...+-.+|.+++-|-.+...-.-
T Consensus 923 gt~~a~~sva~dad~vl~plmdlldgnlt~fa~~cektvlk~vlkelwkivm~tmek~ivlppltdqt~~~~l~~~ki~~ 1002 (1283)
T KOG1011|consen 923 GTGLAKTSVAQDADAVLEPLMDLLDGNLTLFADQCEKTVLKRVLKELWKIVMNTMEKRIVLPPLTDQTLLKQLPNAKIGD 1002 (1283)
T ss_pred ccccchhhcccchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCCcchhHHhccccccccc
Confidence 0123333343 668999999999999998887777777777777765544322110
Q ss_pred ----------------------HHcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHHHH--HhHHHHHhhh
Q 042759 927 ----------------------LLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREA--ETVDGVIGLM 982 (1055)
Q Consensus 927 ----------------------LLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVekea--~~v~~Vl~Lm 982 (1055)
=.+--..|..++---..++=-+..+|+.|.|+|-|| -....|+-- ...+-.|.||
T Consensus 1003 ~t~~tq~~f~aak~l~lsk~k~hmvree~ksltpkqcavld~aldtikq~fhagg~gl-kktflekspdlqslryalsly 1081 (1283)
T KOG1011|consen 1003 VTKLTQTIFQAAKELNLSKLKDHMVREEEKSLTPKQCAVLDLALDTIKQYFHAGGKGL-KKTFLEKSPDLQSLRYALSLY 1081 (1283)
T ss_pred hhhHHHHHHHHHHhcchhhHHHHHHHHHhccCCccceehhhhhHHHHHHHHhccCcch-hhhHhhcCccHHHHHHHHHHH
Confidence 011122344444444555556788999999999999 888888743 3467789999
Q ss_pred cccHHHHHHHHHHhh
Q 042759 983 GQQTEQLIEDFTILS 997 (1055)
Q Consensus 983 ~~~Te~LIe~f~~a~ 997 (1055)
-+.|++||..|-+.-
T Consensus 1082 tqttd~liktfv~sq 1096 (1283)
T KOG1011|consen 1082 TQTTDQLIKTFVTSQ 1096 (1283)
T ss_pred HhHHHHHHHHHHHhh
Confidence 999999999996553
No 6
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=0.82 Score=56.51 Aligned_cols=365 Identities=20% Similarity=0.212 Sum_probs=197.2
Q ss_pred HHHHHhHHhhhhcCCChhHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHhHHHHHH-HHhhhhHhhhcCCcchhhh
Q 042759 383 CFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRMLSSVLASMQGWAE-KRLLRYHDYFHRGTVGQIE 461 (1055)
Q Consensus 383 CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eVa~Dak~~~rd~~y~k~L~S~L~sI~~W~e-krLldYH~~F~~g~~~~me 461 (1055)
|-+|+==||| |++ ..+|.|..+.++ .-++ =++-.-.+-|++-++.++.=.- +-..||-..|+.++.+ +
T Consensus 139 L~~l~~kr~y---~e~-a~~lqai~~ll~--~F~~---Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~--~ 207 (793)
T KOG2180|consen 139 LNALLSKRSY---GEA-ASPLQAILQLLN--HFIA---YKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETH--E 207 (793)
T ss_pred HHHHHhhccH---HHH-HhHHHHHHHHHH--HHHH---hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--C
Confidence 5666666666 332 334444444433 3333 1233334556777777776544 4568999999999852 2
Q ss_pred hHHhHHHHHhhhhccccccccCCCCCCCcccccccccchhhHHHHhhHHHHHHHHHHhcCCCCCCCCCCCCCcchHHHHH
Q 042759 462 NLLPLALLASKILGEDVSITEGGLERGDTKVVMDSTGDRVDHYIRSSVKNAFTNIIENGNLRTEDSDGNDLGETGALLQL 541 (1055)
Q Consensus 462 ~llsla~~aakiL~ed~s~~~~~~~~~~~~~~~d~a~~rId~YIrsSir~AF~~~~e~~~~~~~~~~~~~~~~~~~L~~L 541 (1055)
..+++=.++.-++.-|+- + . ++-..-|+-||+.=+. -|.++-+ .+...+..++.+ .+-
T Consensus 208 ~~~~l~~l~daC~v~d~l-e-----p-------svreelIkwf~~qqL~-ey~~IF~-en~E~a~LDkid-------rRY 265 (793)
T KOG2180|consen 208 EALLLQKLSDACLVVDAL-E-----P-------SVREELIKWFCSQQLE-EYEQIFR-ENEEAASLDKLD-------RRY 265 (793)
T ss_pred CccHHHHHHHHHHHHHHh-C-----C-------ccHHHHHHHHHHHHHH-HHHHHHh-ccHhhhhhhhHH-------HHH
Confidence 222222222222222221 0 1 1222335555443221 1222221 122222222111 113
Q ss_pred HHHHHHHHHHhhhhccccccc-cccchhHHHHHHhHHhHHHHHHHHHhhcCC-CChh-HHHHHHHhhhHHHHHHHHhhhc
Q 042759 542 AKEAEDLALRERECFSPILKR-WHSIAAGVAAVTLHQCYGAVLKQYLAETGT-LKND-TVDVLQRAGKLEKVLVQMVVED 618 (1055)
Q Consensus 542 A~e~~~LA~~E~~~FSPiLkr-WhP~A~~VAa~tLH~cYG~~LKqfL~g~s~-LT~d-~v~VL~AAd~LEk~Lvq~~vEd 618 (1055)
|-=-+.|-..| +.|-||+=+ ||- |-.+...--|. =-++|.+-|..... ++-+ .+-.|+..-.+|+.|-.--...
T Consensus 266 ~wfKr~L~~fe-~k~~~iFP~dW~v-~~RLt~eFc~~-Tr~~L~~Il~~~~~~~~v~lll~Alq~TleFE~~L~kRF~g~ 342 (793)
T KOG2180|consen 266 AWFKRLLRDFE-EKWKPIFPADWHV-AYRLTIEFCHQ-TRKQLESILKRRKKEPDVKLLLFALQSTLEFEKFLDKRFSGG 342 (793)
T ss_pred HHHHHHHHHHH-HhccccCCcccch-hHHHHHHHHHH-HHHHHHHHHHHhhhCccHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 33334455555 578888754 773 33333322222 23455566665431 2221 1233555677899887654211
Q ss_pred cc--ccCCCCcccccccCcch--hhHHhHHHHHHHHHHHHhhhhhHHHhhhhccccC--CCCCCCCCc---hhHHHHHHH
Q 042759 619 SA--ECDDGGKGIVREMIPYE--VDSIILRQLRLWIQERINRGKECYLRAKESETWN--PKSKSEPYA---QSAVELMRH 689 (1055)
Q Consensus 619 sv--d~ddggksvirem~PYe--ve~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E~W~--P~S~~e~~A---~SaVEvlRi 689 (1055)
.. -.+++++-.-.+--+|+ +-+..-|-+--||+.|=..+.+-+++..+.++|. |.++.+-.+ ||..+||+.
T Consensus 343 ~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e~~~~~~p~~~~~~~s~vlpSsadlF~~ 422 (793)
T KOG2180|consen 343 TLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSEEKWDGEPKSNTDEESLVLPSSADLFVA 422 (793)
T ss_pred CCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhhhccCCCCCCCcccccccCccHHHHHHH
Confidence 00 01121110000111222 4555667788999999999999999999999997 877554444 999999999
Q ss_pred HHHHHHhhhcCCCCCC-hhHHHHHHHHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCcchhhhhhh--cCCCCCc
Q 042759 690 AKDTVDDFFEIPIGIT-DDLVHDLADGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDSKFSKLWKK--ASPCTVA 765 (1055)
Q Consensus 690 veETvD~FF~lpvp~~-~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk--~~p~~~p 765 (1055)
-+.++-|+-+|- -. +.++.+++ -+-+.+++|..++ .+. +|..|=-.-+....-+.+- +.-|+.
T Consensus 423 Ykkcltq~~~Ls--~n~dpl~~~~~-~f~k~LreYa~kil~~~---------lP~~t~~s~g~~v~~l~~~e~~~~~~~- 489 (793)
T KOG2180|consen 423 YKKCLTQCSELS--ENNDPLIALLA-VFSKWLREYAQKILLGN---------LPDTTSSSDGAAVYLLLRIEGAEYCRF- 489 (793)
T ss_pred HHHHHHHHHHhc--cCCchHHHHHH-HHHHHHHHHHHHHhhcc---------CCcccccccCchhhhHHHhhhhhhhcc-
Confidence 999999999987 33 55555555 8889999999887 444 7777655433211111221 111110
Q ss_pred ccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhhhccc
Q 042759 766 VEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSL 815 (1055)
Q Consensus 766 ~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk~i~~ 815 (1055)
+--..-..|.+|||+.|+..--.-|||+++.
T Consensus 490 -------------------t~d~l~di~~~lst~e~~~~tt~qle~kl~e 520 (793)
T KOG2180|consen 490 -------------------TIDQLLDICCILSTAEYCLATTIQLEKKLKE 520 (793)
T ss_pred -------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011223599999999999999999998543
No 7
>KOG2286 consensus Exocyst complex subunit SEC6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.95 E-value=18 Score=45.41 Aligned_cols=350 Identities=17% Similarity=0.227 Sum_probs=203.6
Q ss_pred HHHHHHHHHhhhhccccccccccchhHHHHHHhHHhHHHHHHHHHhhcCCCChhHHHHHHH---hh-hHHHHHHHHhhhc
Q 042759 543 KEAEDLALRERECFSPILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGTLKNDTVDVLQR---AG-KLEKVLVQMVVED 618 (1055)
Q Consensus 543 ~e~~~LA~~E~~~FSPiLkrWhP~A~~VAa~tLH~cYG~~LKqfL~g~s~LT~d~v~VL~A---Ad-~LEk~Lvq~~vEd 618 (1055)
.|+..+...=..+|+|- |.-+.+ .=..|-+.|..++..+.+.-+++-++|.- .. ..++.++|.-+.
T Consensus 248 EdL~~~~~~l~~cfpp~---~~if~~------~l~~Yh~~ls~ll~dl~s~~l~~~eil~llawV~~~~~~~~l~~~~~- 317 (667)
T KOG2286|consen 248 EDLRVAKRVLVPCFPPH---YNIFSA------YLELYHQALSDLLRDLASEALELREILQLLAWVRNEYYTPLLQLNVD- 317 (667)
T ss_pred HHHHHHHHhhcccCCch---hHHHHH------HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHhcChhhhccch-
Confidence 34444443444577764 443332 22456677888888887776666555542 22 333344432221
Q ss_pred ccccCCCCcccccccCcchhhHHhHHHHHHHHHHHHhhhhhHHHhhhhcc--ccC----CCCCCCCC--chhHHHHHHHH
Q 042759 619 SAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESE--TWN----PKSKSEPY--AQSAVELMRHA 690 (1055)
Q Consensus 619 svd~ddggksvirem~PYeve~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E--~W~----P~S~~e~~--A~SaVEvlRiv 690 (1055)
..++..|==-...+..|+...+...-.+++||+..+.+.| +|- |....+.| -+=++-+|+|+
T Consensus 318 ----------~~~~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~P~rd~~g~~~t~~p~~~fqmi 387 (667)
T KOG2286|consen 318 ----------VLRALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETEPPRDEEGYLYTPGPVIFFQMI 387 (667)
T ss_pred ----------hhhhhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccccccccCcccHHHHHhh
Confidence 1122334344567788999999999999999999999998 453 33344433 37788999999
Q ss_pred HHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccc
Q 042759 691 KDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQ 770 (1055)
Q Consensus 691 eETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~ 770 (1055)
.+.|.-+=.+ ..||..=+-+++-.|+.-..+ .|.++--+. +... |.+
T Consensus 388 ~q~l~~~~~~--------~~Dl~~~~~~~~~~~v~~f~~---------------~~~~~~~~~---~e~~----~~~--- 434 (667)
T KOG2286|consen 388 TQQLQVAAAT--------SSDLSGKILRSLLSEVPSFAR---------------NYPKAQDED---QESH----RRE--- 434 (667)
T ss_pred HHHHHHHHhh--------HHHHHHHHHHHHHHHhHHHHH---------------HHHHhHHHH---HHhc----hhc---
Confidence 9988876555 233332222222222211100 122211000 0000 111
Q ss_pred cccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhh---hhhcccCCCccCCccccccccccCCCCCchhHHHHHHH
Q 042759 771 QINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSL---DKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAI 847 (1055)
Q Consensus 771 ~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~L---Ek~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~ar~a~ 847 (1055)
..-+.. +|++.-+++= ...+...|.. .+.....-++....+
T Consensus 435 --------------~~~~l~---------~y~iA~~N~~~~~a~~~~~~~~~-------------~d~~~~~l~~~~~i~ 478 (667)
T KOG2286|consen 435 --------------QPEGLR---------EYLIANINNNLKMAMLMVNLKSK-------------YDTLKGLLDGFIEIA 478 (667)
T ss_pred --------------ccccHH---------HHHHHHHhchhHHHHHHHHHHhc-------------cchhHHHhHHHHHHH
Confidence 111222 2222222111 1111111111 112334556666777
Q ss_pred HHHHHHHHHhhceeeeeeccchhhHhhhccCc-cccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Q 042759 848 QSACQHVSEVAAYRLIFLDSNSVFYESLYVGD-VANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMV 926 (1055)
Q Consensus 848 ~~ai~~l~E~~AyrlVF~Dlr~~f~d~LY~g~-Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~V 926 (1055)
+.|+..|.|. ||.|+...| ..||-.. -+++=.+-+.-+++..|........+. ..++|-++-...+-.||+-
T Consensus 479 ~~~~~~l~e~-----~~~d~~~~~-~~lf~~~W~~g~~~~~Iv~T~~dy~~D~~~~~~~~-f~~fi~e~~~~~v~~Yl~~ 551 (667)
T KOG2286|consen 479 KHGVSGLLEE-----IFLDLQPLL-NKLFTKEWCAGSVTENIVATLDDYLPDFKELMGEY-FVRFIEEASLELVIEYLRA 551 (667)
T ss_pred HhHHHHHHHH-----HHHHHHHHH-HHHhhhhhhchhhHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 7788888886 788987654 5555443 223445667888888888888888888 8899999999999999999
Q ss_pred HHcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHHHHHhHHHHHhhhcc-cHHHHHHHHHHhh
Q 042759 927 LLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQ-QTEQLIEDFTILS 997 (1055)
Q Consensus 927 LLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVekea~~v~~Vl~Lm~~-~Te~LIe~f~~a~ 997 (1055)
|+-+= +|..+=.+-|.-|++.|++||---|+ -||--..+..-|.+||.. +-+.++..++..-
T Consensus 552 l~~kr---~~~~~~~~~i~~d~~~~~~~f~~~~~------~~~~~~~~~~~l~el~~~~d~d~~~~~~~~l~ 614 (667)
T KOG2286|consen 552 LSKKR---ASIQELIEKIKSDAETLYHFFRKYGS------DVDTLISTISTLAELISLQDPDLIKLEVSTLL 614 (667)
T ss_pred HHhhh---hhHHHHHHHHHhhHHHHHHHHHHhCc------chhhhhhhhHHHHHHHhcCChHHHHHHHHHHH
Confidence 98874 45444445555899999999988887 344445555556666655 8888888887775
No 8
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=92.47 E-value=0.9 Score=54.01 Aligned_cols=286 Identities=16% Similarity=0.181 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhhhhhHHHhhhhcc-ccCCCCCC------C-CCchhHHHHHHHHHHHHHhhhcCCCCCC---------h
Q 042759 644 RQLRLWIQERINRGKECYLRAKESE-TWNPKSKS------E-PYAQSAVELMRHAKDTVDDFFEIPIGIT---------D 706 (1055)
Q Consensus 644 ~Lv~~Wi~~ql~~l~ewv~Ra~q~E-~W~P~S~~------e-~~A~SaVEvlRiveETvD~FF~lpvp~~---------~ 706 (1055)
.....|++--.+-..+-.+-.+..+ .|++.... + +=..||+.++++++.+.|.|=.+|-.-+ .
T Consensus 132 ~~~~~Wl~~E~~~a~~r~~~i~~s~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql 211 (494)
T PF04437_consen 132 DWFDRWLNAEKEFALERFDEIISSPDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQL 211 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHH---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHH
Confidence 4567888877766666666555554 68887422 1 2237999999999999998855553322 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCc
Q 042759 707 DLVHDLADGLQQLFREYTTFVASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTS 786 (1055)
Q Consensus 707 ~ll~~L~~Gld~~lq~Y~~~v~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s 786 (1055)
.++.+..+.|...++.|....+. ... . ...
T Consensus 212 ~lld~~~~~L~~~~~~~~~~~s~------------------~~~-------------------------~-------~~~ 241 (494)
T PF04437_consen 212 PLLDDYHDRLSQSLEAFESSTST------------------LAS-------------------------L-------SGD 241 (494)
T ss_dssp HHHHHTHHHHHHHHHHHHHT----------------------SC-------------------------E-------EHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccc------------------hhh-------------------------c-------cCC
Confidence 34444445555555555444322 000 0 114
Q ss_pred ccccchhhhhhhHHHHHHhHhhhhhhcccCC---Ccc-CCcc--ccc-cccccCCCCCchhHHHHHHHHHHHHHHHHhhc
Q 042759 787 RGTQRLYIRLNTLHYLVSHIHSLDKTLSLSP---KIV-PSSR--SRF-ANHRRHTNSNSYFEHATNAIQSACQHVSEVAA 859 (1055)
Q Consensus 787 ~~t~~LcVRLNTL~yi~~~l~~LEk~i~~~~---~~~-~S~~--~~~-~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~A 859 (1055)
-++.++|.-+|+.+||.+.|....+.+-.-. ... .+.. .+. +..+ ....+.||.+.+.-..-..+..+.+.
T Consensus 242 ~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~--~~~~siFde~i~~y~~l~~~~~~~iv 319 (494)
T PF04437_consen 242 SGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETS--SEEGSIFDETISAYEKLRKRMLESIV 319 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHT--T--S-TTHHHHHHHHHHHTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhccccccccccccc--CCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999988877543210 000 0000 000 0011 12345776655444433333222222
Q ss_pred eeee------eeccch-hhHhhhccC-----ccccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Q 042759 860 YRLI------FLDSNS-VFYESLYVG-----DVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVL 927 (1055)
Q Consensus 860 yrlV------F~Dlr~-~f~d~LY~g-----~Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VL 927 (1055)
-.++ +..... .-|+..-.. ..-++-+-++|..|...|..+...|.-..-.++.+.|...--+-+.--+
T Consensus 320 ~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f~~i~r~ia~~l~~~l~~~I 399 (494)
T PF04437_consen 320 DRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADFRRIWRRIASKLDDYLWESI 399 (494)
T ss_dssp HHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 111111 334444443 2347899999999999999999999988888888888887777766633
Q ss_pred HcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHHHHHhHHHHHhhhcccHHHHH
Q 042759 928 LAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLI 990 (1055)
Q Consensus 928 LaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVekea~~v~~Vl~Lm~~~Te~LI 990 (1055)
+-.. .|++.-..-++.|++.|..+|=. .... | +..-..+.+.+.|+.++.+...
T Consensus 400 l~~n---~Fs~~Ga~Ql~~D~~~L~~~~~~-~~~~-p----~~~f~~l~E~~~LL~L~~~~~~ 453 (494)
T PF04437_consen 400 LMSN---KFSRAGAAQLQFDMRALFSVFSQ-YTPR-P----EAFFKRLREACKLLNLPYGSAK 453 (494)
T ss_dssp TTTS----B-HHHHHHHHHHHHHHHTTS---TTSG-G-----HHHHHHHHHHHHHGGGG-CGG
T ss_pred hhcC---eeChhHHHHHHHHHHHHHHHHHh-hccC-H----HHHHHHHHHHHHHcCCCCcchh
Confidence 3332 89999999999999999999987 2223 3 4666677788888888887644
No 9
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=89.12 E-value=2.9 Score=47.39 Aligned_cols=249 Identities=13% Similarity=0.148 Sum_probs=132.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCcchh
Q 042759 675 KSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDSKFS 753 (1055)
Q Consensus 675 ~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s~~~ 753 (1055)
..=||.+.+..+.++|+..+++++..- .++-+ -..-+|..+.+|+..+ .... ...+.
T Consensus 26 ~~lPFS~~vp~~c~~ir~fi~~~~~F~----~~~~~-~~~eid~~v~ks~d~lL~~~l-----------------~~~L~ 83 (311)
T PF04091_consen 26 KKLPFSQMVPMCCRQIRSFIEKCYKFS----DDLYQ-SSTEIDDIVRKSLDRLLTRVL-----------------NGSLK 83 (311)
T ss_dssp --SSSBTHHHHHHHHHHHHHHHHHHHH----HHTT---HHHHHHHHHHHHHHHHHHHH-----------------HHHHH
T ss_pred eeCCCchHHHHHHHHHHHHHHHHHHHH----Hhccc-chHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Confidence 566899999999999999999998753 11111 2234555666666664 3210 01111
Q ss_pred hhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhhhcccCCCccCCccccccccccC
Q 042759 754 KLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRH 833 (1055)
Q Consensus 754 ~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~~~~~~~ 833 (1055)
.. +. ++ ++..+++--+..|.|+..-...||+-|...-+....... ...
T Consensus 84 ~~----------------i~----------~~-~~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~-----~~~ 131 (311)
T PF04091_consen 84 SK----------------IR----------SS-LNLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGG-----HIR 131 (311)
T ss_dssp HH----------------HT-----------T-S-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT---------------
T ss_pred HH----------------Hh----------cC-CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchH-----hHh
Confidence 11 10 12 567778888888999999999999876432211111111 001
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhceeeeeeccchhhHhhhccCccccccchHHHHHHHHHHHHHHHHhhhHhhHHHHH
Q 042759 834 TNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIK 913 (1055)
Q Consensus 834 ~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~Dlr~~f~d~LY~g~Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~ 913 (1055)
......|..+|+++...|-.+++.--=- |+++-+.=|-.-=..+-+|.=|.-++.-|+...+.+-..|...++..+..
T Consensus 132 l~a~~~f~~~r~~Ae~~I~~lv~~KIDe--~lela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~ 209 (311)
T PF04091_consen 132 LKATKMFKDARKAAEKRIFELVNSKIDE--FLELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYF 209 (311)
T ss_dssp ------S---TTHHHHHHHHHHHHHHHH--HHTT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2346899999999888876655542111 11332222333222222344455555555555555556788899999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCcccccchhhhHHHHHHHHHHHHhhC-----CCCCChhHHHHHHHHhHHHHHhhhccc
Q 042759 914 EVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTC-----GEGLIVEDVVDREAETVDGVIGLMGQQ 985 (1055)
Q Consensus 914 ~vMkAsfdafL~VLLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~-----GeGL~p~evVekea~~v~~Vl~Lm~~~ 985 (1055)
..|+-.-+.|+-.|| +-..+.|+..=+.-++-|.+.|..+--+. |++- +.+ .-...+|.|+||..+
T Consensus 210 ~a~~his~~l~~~Ll-~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~----L~~-~F~eLrQlvdLl~s~ 280 (311)
T PF04091_consen 210 SACDHISESLLDLLL-SDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPS----LRE-TFAELRQLVDLLLSD 280 (311)
T ss_dssp HHHHHHHHHHHHHHT----------TTHHHHHHHHHHHHHHHTT-SSSS--SST----TGG-GGHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhc-CCcccccCHHHHHHHHHHHHHHHHHHHhCcCccccccc----HHH-HHHHHHHHHHHHhcC
Confidence 999998899998888 45578899999999999999998887777 4333 222 223577888877443
No 10
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=48.89 E-value=8.2 Score=39.83 Aligned_cols=26 Identities=35% Similarity=0.663 Sum_probs=24.3
Q ss_pred chhhhHHHHHHHHHhhhhccCCchhh
Q 042759 354 LVLDEVDELLELMKKTWSTLGINRPI 379 (1055)
Q Consensus 354 ~vidEvDElLELiKkTW~iLGI~q~l 379 (1055)
.+..|++|+|.|--+.|.-||+|+.|
T Consensus 90 eLn~EAe~~L~lal~LWdSL~Lne~I 115 (148)
T PF09201_consen 90 ELNQEAEQTLDLALKLWDSLGLNESI 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhcCccHHH
Confidence 46689999999999999999999999
No 11
>PF06222 Phage_TAC: Phage tail assembly chaperone; InterPro: IPR010411 This entry is represented by Bacteriophage HK97, Gp13 and Gp14. These are two overlapping reading frames []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. These proteins include several putative tail assembly chaperones encoded by phages of Gram-negative bacteria.; PDB: 2OB9_A.
Probab=47.11 E-value=13 Score=37.83 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHcCCCCcccccchhhhHHH
Q 042759 915 VMKASFEAFLMVLLAGGSSRVFYRSDHEMIEE 946 (1055)
Q Consensus 915 vMkAsfdafL~VLLaGGPsRaF~~~D~~miEE 946 (1055)
=|+|.+.=|+.|||+-..-|+|+++|.+.+.+
T Consensus 70 n~~Adv~LFidVL~dE~~~rVFsd~D~~~V~~ 101 (127)
T PF06222_consen 70 NLRADVVLFIDVLLDEDGQRVFSDDDAEQVAA 101 (127)
T ss_dssp HHHHHHHHHHHHEE-TTS-BSS-GGGHHHHHC
T ss_pred hhhcchhhhhHHHhcCCCCcccCcchHHHHHH
Confidence 68999999999999999999999999998874
No 12
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=40.02 E-value=1.6e+02 Score=38.77 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCCCCC
Q 042759 161 GHGHGGTSPAGNTNNYS 177 (1055)
Q Consensus 161 ~~~~~~~~~~~~~~~~~ 177 (1055)
|.|-|+++-+|.++-..
T Consensus 1255 GfgrgggrgagggGgfg 1271 (1282)
T KOG0921|consen 1255 GFGRGGGRGAGGGGGFG 1271 (1282)
T ss_pred CcCCCCCCCCCCCCCCC
Confidence 34455566666665443
No 13
>KOG4032 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.19 E-value=1.4e+02 Score=32.28 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhhcc---------CCchhhhHHHHHHHhHHhhhhcCCChhHHHHHHHHHHHHHHHhhCCCCcchhHHHHH
Q 042759 360 DELLELMKKTWSTL---------GINRPIHNVCFTWVLFQQYVVTSLSEPDLLCAAHTMLAELANDAKKPDREAIYVRML 430 (1055)
Q Consensus 360 DElLELiKkTW~iL---------GI~q~lHn~CfaWVLF~QyV~Tgq~E~dLL~aa~~~L~eVa~Dak~~~rd~~y~k~L 430 (1055)
....++|=.-|+.| |++-.=|..=++|+++++|+.|--|+...+.--+..+.--.-+.+- +-|+.|-
T Consensus 14 r~~vg~il~~W~al~~AVEng~GG~dsqek~~w~~~~~~d~~~~~~dV~~~eieE~L~~~l~~EFnt~~-eDDS~~~--- 89 (184)
T KOG4032|consen 14 RVGVGKILNSWPALRLAVENGWGGRDSQEKAKWITGVVVDYFTMNKDVKAREIEELLLELLGDEFNTKV-EDDSLPE--- 89 (184)
T ss_pred HHHHHHHHHccHHHHHHHHhccCCccHHHHHHHHHhhHhhhcccccchhHHHHHHHHHHHHHHHhhccc-cCCCHHH---
Confidence 35566777789887 8888899999999999999999977666655544444322333332 4566663
Q ss_pred HHHHHhHHHHHHHHhhhhHhhhcCCcchhhhhHHhH
Q 042759 431 SSVLASMQGWAEKRLLRYHDYFHRGTVGQIENLLPL 466 (1055)
Q Consensus 431 ~S~L~sI~~W~ekrLldYH~~F~~g~~~~me~llsl 466 (1055)
.-.-|++|-.++.++|...++-+++=
T Consensus 90 ----------ia~~L~n~f~~~~~~N~~~ieells~ 115 (184)
T KOG4032|consen 90 ----------IAQLLLNLFHDIQNGNYAIIEELLSK 115 (184)
T ss_pred ----------HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 12457888888889997777766653
No 14
>PF15623 CT47: Cancer/testis gene family 47
Probab=36.27 E-value=12 Score=42.06 Aligned_cols=23 Identities=30% Similarity=0.671 Sum_probs=20.8
Q ss_pred hhceeeeeeccchhhHhhhccCc
Q 042759 857 VAAYRLIFLDSNSVFYESLYVGD 879 (1055)
Q Consensus 857 ~~AyrlVF~Dlr~~f~d~LY~g~ 879 (1055)
.++||++|+||-|+++..||-.+
T Consensus 113 maGfR~~fLDLVhslL~RiY~ND 135 (279)
T PF15623_consen 113 MAGFRFMFLDLVHSLLNRIYYND 135 (279)
T ss_pred cccceeeHHHHHHHHHHHHhhcC
Confidence 46899999999999999999864
No 15
>PF07640 QPP: QPP; InterPro: IPR011507 These Rhodopirellula baltica proteins share a highly conserved sequence, centred around an invariant QPP motif, at their N termini. This motif may represent an export signal.
Probab=35.33 E-value=15 Score=30.14 Aligned_cols=10 Identities=60% Similarity=1.232 Sum_probs=7.9
Q ss_pred CCCCCccccc
Q 042759 739 TLPPLTRCNR 748 (1055)
Q Consensus 739 ~lPpLTRc~~ 748 (1055)
--||||||--
T Consensus 4 nQPPLTRcGS 13 (36)
T PF07640_consen 4 NQPPLTRCGS 13 (36)
T ss_pred CCCCcccccc
Confidence 3599999973
No 16
>PF12854 PPR_1: PPR repeat
Probab=31.74 E-value=39 Score=26.22 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=25.2
Q ss_pred CCCCchHHHHHHHHhhccccCCCcchhhhHHHHHHHHH
Q 042759 330 DGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMK 367 (1055)
Q Consensus 330 DGypLNvrLYe~LL~aiFD~~dEg~vidEvDElLELiK 367 (1055)
.|+++|+..|..|+.+.--. --+||+-++++-|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~----G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKA----GRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHC----CCHHHHHHHHHhCc
Confidence 48999999999999987653 23567777776553
No 17
>PF06292 DUF1041: Domain of Unknown Function (DUF1041); InterPro: IPR010439 This entry represents Calcium-dependent secretion activators that are involved in the exocytosis of vesicles filled with neurotransmitters and neuropeptides. They also may specifically mediate the Ca2+-dependent exocytosis of large dense-core vesicles (DCVs) and other dense-core vesicles by acting as a PtdIns(4,5)P2-binding protein that acts at prefusion step following ATP-dependent priming and participates in DCVs-membrane fusion []. However, it probably also participates in small clear synaptic vesicles (SVs) exocytosis and it is unclear whether its function is related to Ca2+ triggering []. This protein is often found in tandem repeats and co-occur with C2 domains IPR000008 from INTERPRO, Protein kinase C, phorbol ester/diacylglycerol binding regions IPR002219 from INTERPRO and PH domains IPR001849 from INTERPRO.
Probab=27.94 E-value=2.4e+02 Score=28.11 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=47.9
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccccc--cccchhHHHHHHhHHhHHHHHHHHHh
Q 042759 536 GALLQLAKEAEDLALRERECFSPILKR--WHSIAAGVAAVTLHQCYGAVLKQYLA 588 (1055)
Q Consensus 536 ~~L~~LA~e~~~LA~~E~~~FSPiLkr--WhP~A~~VAa~tLH~cYG~~LKqfL~ 588 (1055)
.-+..||.=+-++-...++.|+|+|.. |-|.-+.+.|.++=.+|..-|+..|+
T Consensus 50 e~w~~L~eL~v~vleed~e~y~~vln~F~~~~~l~~~hAE~fWsLfa~Dm~~aLe 104 (106)
T PF06292_consen 50 EFWIRLIELCVSVLEEDKEHYAPVLNQFPWELDLGVEHAEIFWSLFAVDMDAALE 104 (106)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhhhchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788888889999999999999998 88999999999999999999998875
Done!