Query 042759
Match_columns 1055
No_of_seqs 87 out of 89
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 16:00:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swh_A MUNC13-1, protein UNC-1 99.9 1.1E-25 3.9E-30 247.9 21.6 289 640-994 9-336 (341)
2 2fji_1 Exocyst complex compone 98.4 6.8E-06 2.3E-10 91.9 18.7 306 639-997 6-333 (399)
3 3kog_A Putative pore-forming t 70.2 1.3 4.4E-05 47.3 1.2 15 157-171 235-249 (256)
4 2pk2_A Cyclin-T1, protein TAT; 69.9 0.92 3.2E-05 50.5 0.0 18 31-48 225-243 (358)
5 3hr0_A COG4; conserved oligome 57.7 27 0.00094 37.5 8.5 223 786-1040 16-254 (263)
6 2ob9_A Tail assembly chaperone 55.3 9.5 0.00032 37.5 4.0 38 908-946 62-99 (130)
7 3fhn_A Protein transport prote 46.5 73 0.0025 38.9 10.5 95 882-986 562-658 (706)
8 2gz6_A N-acetyl-D-glucosamine 39.1 79 0.0027 34.1 8.6 77 334-413 173-270 (388)
9 1nrj_A Signal recognition part 38.7 7 0.00024 39.2 0.2 27 353-379 96-122 (158)
10 1fp3_A N-acyl-D-glucosamine 2- 24.2 70 0.0024 35.0 5.1 75 336-413 183-279 (402)
11 2zu6_B Programmed cell death p 24.2 65 0.0022 35.3 4.7 95 594-701 86-180 (307)
12 2a2f_X Exocyst complex compone 23.9 1.2E+02 0.004 33.7 6.7 245 672-983 66-317 (325)
13 3fx7_A Putative uncharacterize 22.0 51 0.0018 30.8 2.9 36 233-269 56-91 (94)
No 1
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=99.94 E-value=1.1e-25 Score=247.94 Aligned_cols=289 Identities=15% Similarity=0.245 Sum_probs=204.2
Q ss_pred HHhHHHHHHHHHHHHhhhhhHHHhhhhccccCCCC---CCCCCchhHHHHHHHHHHHHHhhhcCCCCCCh---hHHHHHH
Q 042759 640 SIILRQLRLWIQERINRGKECYLRAKESETWNPKS---KSEPYAQSAVELMRHAKDTVDDFFEIPIGITD---DLVHDLA 713 (1055)
Q Consensus 640 ~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E~W~P~S---~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~---~ll~~L~ 713 (1055)
....+.|.+|+++.-++..+||++|++.++|.|.. .+.+|..|+|++|+++.++++.+.+|.-|-.. .....|+
T Consensus 9 ~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f~t~l~ 88 (341)
T 3swh_A 9 AWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTSEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHYMRRFA 88 (341)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999999999998875 67899999999999999999999999988664 4566788
Q ss_pred HHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccch
Q 042759 714 DGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRL 792 (1055)
Q Consensus 714 ~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~L 792 (1055)
.-|-+++-.|+..+ ... ... +. ..++..+
T Consensus 89 ~~i~~~~~~Y~~~l~~~~----------------------~~~----------------~~------------~e~~~~~ 118 (341)
T 3swh_A 89 KTISNVLLQYADIVSKDF----------------------ASY----------------CS------------KEKEKVP 118 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH----------------------HHH----------------CC------------TTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHH----------------------Hhh----------------hh------------hhcccch
Confidence 89999999998887 332 000 00 0013358
Q ss_pred hhhhhhHHHHHHhHhhhhhhcccCCCccCCccccccccccCCCCCchhHHHHHHHHHHHHHHHHhhceeeeeeccch-hh
Q 042759 793 YIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHATNAIQSACQHVSEVAAYRLIFLDSNS-VF 871 (1055)
Q Consensus 793 cVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~ar~a~~~ai~~l~E~~AyrlVF~Dlr~-~f 871 (1055)
||-||-++|++.+|+.+-+.+ .|....+ ......+..+..++..+++++...+-|+. -+++. ++
T Consensus 119 Cv~lNNie~lR~~L~~l~~~l--~~~~l~~------------~~~~~~~~lq~~l~~vl~~l~~~~~~~~~-~~i~~~v~ 183 (341)
T 3swh_A 119 CILMNNTQQLRVQLEKMFEAM--GGKELDA------------EASGTLKELQVKLNNVLDELSHVFATSFQ-PHIEECVR 183 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--TTTTSCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTH-HHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHHHhc--chhhHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999998866 2221111 11224444555555555555543333321 00000 00
Q ss_pred --Hhhhc--c--Ccc-----------ccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH-------
Q 042759 872 --YESLY--V--GDV-----------ANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVL------- 927 (1055)
Q Consensus 872 --~d~LY--~--g~V-----------a~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VL------- 927 (1055)
-..|+ . |.+ .+.+|+|+++.||++|..+.+.+++.+.++++++||++++++|..++
T Consensus 184 ~m~~~l~~i~~~~~~~~~~~~~~~~~~~~ai~PLm~yLd~~L~~l~~~L~~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~ 263 (341)
T 3swh_A 184 QMGDILSQVKGTGNVPASACSSVAQDADNVLQPIMDLLDSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPEFS 263 (341)
T ss_dssp HHHHHHHTCC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC
T ss_pred HHHHHHHhhcccccCCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhh
Confidence 00111 0 111 25799999999999999999999999999999999999999999998
Q ss_pred -----HcCCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHH--HHHhHHHHHhhhcccHHHHHHHHH
Q 042759 928 -----LAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDR--EAETVDGVIGLMGQQTEQLIEDFT 994 (1055)
Q Consensus 928 -----LaGGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVek--ea~~v~~Vl~Lm~~~Te~LIe~f~ 994 (1055)
++||+.|.|++.++++++++|+.||++|+|+|+|| |.+.+|+ +...++.+|.|+.++|++||+.|-
T Consensus 264 ~~~~~~~~~~~r~~~~~~~~~l~~~L~~L~~fFhA~G~GL-~~~~Leks~~~~~l~~~L~L~~~~T~~LI~~f~ 336 (341)
T 3swh_A 264 KLKDHMVREEAKSLTPKQCAVVELALDTIKQYFHAGGVGL-KKTFLEKSPDLQSLRYALSLYTQATDLLIKTFV 336 (341)
T ss_dssp SSSCC----------CTTHHHHHHHHHHHHHHHHGGGTSC-CHHHHHTCHHHHHHHHHHHHC------------
T ss_pred hhHhhhcccccCCCCHHHHHHHHHHHHHHHHHhccCCCCC-CHHHHccChhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 79999999999999999999999999999999999 9999997 688999999999999999999884
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=6.8e-06 Score=91.89 Aligned_cols=306 Identities=11% Similarity=0.108 Sum_probs=200.8
Q ss_pred hHHhHHHHHHHHHHHHhhhhhHHHhhhhcc--ccC-----CCCCC--CCCchhHHHHHHHHHHHHHhhhcCCCC-CChhH
Q 042759 639 DSIILRQLRLWIQERINRGKECYLRAKESE--TWN-----PKSKS--EPYAQSAVELMRHAKDTVDDFFEIPIG-ITDDL 708 (1055)
Q Consensus 639 e~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E--~W~-----P~S~~--e~~A~SaVEvlRiveETvD~FF~lpvp-~~~~l 708 (1055)
++.+..|+..|++.-..++.||++|.+++| +|. |.... ..+.+.+++||+|+++.++.--.+.-. +-..+
T Consensus 6 ~~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~v 85 (399)
T 2fji_1 6 DKEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVGV 85 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCeeCCchHHHHHHHHHHHHHHHhCCCcccHHHH
Confidence 567889999999999999999999999999 787 33222 236799999999999999988876522 33345
Q ss_pred HHHHHHHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCcchhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcc
Q 042759 709 VHDLADGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDSKFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSR 787 (1055)
Q Consensus 709 l~~L~~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~ 787 (1055)
+...+..+..-++.|...+ ..+ .+ |.. .-++.||. +++-+|++. ....
T Consensus 86 ~~~~~~~L~~f~~~~~~~l~~~~-~~------------~~~--~~~~~~~~-~~~~~~~~~---------------~~~~ 134 (399)
T 2fji_1 86 VERFSDLLTKRQKNWISKISEEI-KK------------QIN--YNHKYDID-PESITPEDE---------------CPGG 134 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HH------------HHH--HHHTTTTG-GGSCCTTTC---------------CCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH------------Hhc--cccccccc-ccccCcccc---------------cccc
Confidence 5555555555555555544 221 00 000 00111110 000001000 0012
Q ss_pred cccchhhhhhhHHHHHHhHhhhhhhcccCCCccCCccccccccccCCCCCchhHHH----HHHHHHHHHHHHHhhceeee
Q 042759 788 GTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANHRRHTNSNSYFEHA----TNAIQSACQHVSEVAAYRLI 863 (1055)
Q Consensus 788 ~t~~LcVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~~~~~~~~~~~~~Fd~a----r~a~~~ai~~l~E~~AyrlV 863 (1055)
-++.||.=+|+-.....-+..|++++...+... .. ......|+.+ ...+..|++++++ .|
T Consensus 135 ~~e~liA~~Nn~~~~~e~~~~l~~~~~~~~~~~----~~-------~~~~~~l~~~~~~f~~l~~~~~~~L~~-----~i 198 (399)
T 2fji_1 135 LVEYLIAVSNDQMKAADYAVAISSKYGKLVSKV----YE-------KQITNHLEGTLDGFAEVAQCSSLGLIT-----LM 198 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH----HH-------HHHHHHHHTTHHHHHHHHHHHHHHHHH-----HH
T ss_pred HHHhhhhhhccHHHHHHHHHHHHHHHHHhccHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 277789889999888888899988764322110 00 0001123222 2345556666665 47
Q ss_pred eeccchhhHhhhccCcc-ccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHcCCCCcccc---cc
Q 042759 864 FLDSNSVFYESLYVGDV-ANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFY---RS 939 (1055)
Q Consensus 864 F~Dlr~~f~d~LY~g~V-a~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VLLaGGPsRaF~---~~ 939 (1055)
|.|++..| ..||...= .+.=++.++.+++..+..+-..+++...+.++.++..-.+--|+..|+. ...|. ..
T Consensus 199 f~dl~p~~-~~lft~~W~~~~~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~---~~~~~~~~~~ 274 (399)
T 2fji_1 199 FDDLRKPY-QEIFSKTWYMGSQAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF---EHSFKNKNNK 274 (399)
T ss_dssp HHTTHHHH-TTTTSGGGTTCCHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG---CCCCCCGGGH
T ss_pred HHHHHHHH-HHhCCchhcCCcHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCchhHH
Confidence 88988544 55554332 1224788888888888888888899999999999999999999999997 33455 66
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCCCh--hHHHHHHHHhHHHHHhhhcccH-HHHHHHHHHhh
Q 042759 940 DHEMIEEDFDSLKRVFCTCGEGLIV--EDVVDREAETVDGVIGLMGQQT-EQLIEDFTILS 997 (1055)
Q Consensus 940 D~~miEEDf~~LK~lF~a~GeGL~p--~evVekea~~v~~Vl~Lm~~~T-e~LIe~f~~a~ 997 (1055)
=.+-|..|.+.|+++|-.-+.+- . -..|+.....+..+.. +..++ +.+.+.+....
T Consensus 275 ~~~~l~~D~~~l~~~f~~~~~~~-~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l~ 333 (399)
T 2fji_1 275 FLEAMKRDFEIFYQLFVKVLDGN-ESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKYL 333 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC-TTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHH
Confidence 68899999999999998776532 1 1236777778999999 88898 88888887763
No 3
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=70.24 E-value=1.3 Score=47.28 Aligned_cols=15 Identities=67% Similarity=1.234 Sum_probs=4.8
Q ss_pred CCCCCCCCCCCCCCC
Q 042759 157 NFGHGHGHGGTSPAG 171 (1055)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (1055)
+.+||||||.++-|+
T Consensus 235 ~~~hghghg~~~nag 249 (256)
T 3kog_A 235 SHGHGHGHGDDSNAG 249 (256)
T ss_dssp BCBTBC---------
T ss_pred ccccCcCCCCCCCCC
Confidence 568999999876654
No 4
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=69.93 E-value=0.92 Score=50.47 Aligned_cols=18 Identities=11% Similarity=0.176 Sum_probs=14.7
Q ss_pred CC-CCChhhHHHHHHHHhh
Q 042759 31 LE-GIDSDDIRETAYEVFF 48 (1055)
Q Consensus 31 ~~-~l~~~dlretayeif~ 48 (1055)
++ +.+.++|++.+-||+-
T Consensus 225 ~~~~vt~~~l~~i~~~il~ 243 (358)
T 2pk2_A 225 VDATVTLELLDELTHEFLQ 243 (358)
T ss_dssp SCSSCCHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHH
Confidence 44 6899999999988864
No 5
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=57.73 E-value=27 Score=37.52 Aligned_cols=223 Identities=14% Similarity=0.152 Sum_probs=136.2
Q ss_pred cccccchhhhhhhHH----HHHHhHhhhhhhcccCCCccCCcccc---cccccc-CCCCCchh-HHHHHHHHHHHHHHH-
Q 042759 786 SRGTQRLYIRLNTLH----YLVSHIHSLDKTLSLSPKIVPSSRSR---FANHRR-HTNSNSYF-EHATNAIQSACQHVS- 855 (1055)
Q Consensus 786 s~~t~~LcVRLNTL~----yi~~~l~~LEk~i~~~~~~~~S~~~~---~~~~~~-~~~~~~~F-d~ar~a~~~ai~~l~- 855 (1055)
.......||=||+|. ||..=++.||+.+.... |..... .....+ ..... .| +..++.+.+||+++.
T Consensus 16 e~~~~~Flv~LNnld~s~eyi~rL~~~l~~~l~~~F---p~~~d~~~~~~kv~~~l~~l~-~~~~k~~~ll~~gi~~Lf~ 91 (263)
T 3hr0_A 16 DEAKMSFLVTLNNVEVCSENISTLKKTLESDCTKLF---SQGIGGEQAQAKFDSCLSDLA-AVSNKFRDLLQEGLTELNS 91 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHhheeccHHHHHHHHHHHHHHHHHHHHHhC---CCcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 445556899999998 55544445555442211 110000 000000 00111 12 124677899999997
Q ss_pred Hhhceee-----eeeccchhhHhhhccC-ccccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHc
Q 042759 856 EVAAYRL-----IFLDSNSVFYESLYVG-DVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLA 929 (1055)
Q Consensus 856 E~~Ayrl-----VF~Dlr~~f~d~LY~g-~Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VLLa 929 (1055)
.++--|+ -|.|..+.+=+.=|.. +..+.=+..|+..+++.|.-+-.+++...-+.++.-+.......+-..++.
T Consensus 92 ~~ikprLr~~l~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt~~~y~~Ll~~~~~~la~~lE~~i~~ 171 (263)
T 3hr0_A 92 TAIKPQVQPWINSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLSPVIYDSLTGLMTSLVAVELEKVVLK 171 (263)
T ss_dssp HHTHHHHHHHHHGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4655554 2333332221111110 222333678888899999999999999888888888888777777777775
Q ss_pred CCCCcccccchhhhHHHHHHHHHHHHhhCCCCCChhHHHHHHHHhHHHHHhhhcccHHHHHHHHHHhhhhccCCcccCCC
Q 042759 930 GGSSRVFYRSDHEMIEEDFDSLKRVFCTCGEGLIVEDVVDREAETVDGVIGLMGQQTEQLIEDFTILSCETSGIGVVGTG 1009 (1055)
Q Consensus 930 GGPsRaF~~~D~~miEEDf~~LK~lF~a~GeGL~p~evVekea~~v~~Vl~Lm~~~Te~LIe~f~~a~~e~~g~g~~~~~ 1009 (1055)
| -|++==.--+|.|++.|-..|+.-|. -.+=|+.+ ++.||+.|+.++..+=+.+| .| ..++
T Consensus 172 ~----~fn~lGal~LdrDvr~li~~~~~~~~----~~lRekF~-RL~QI~~lLnle~~eev~d~-------~~--~~~~- 232 (263)
T 3hr0_A 172 S----TFNRLGGLQFDKELRSLIAYLTTVTT----WTIRDKFA-RLSQMATILNLERVTEILDY-------WG--PNSG- 232 (263)
T ss_dssp C----CBCHHHHHHHHHHHHHHHHHHHTTSC----TTHHHHTH-HHHHHHHHHTCSSGGGGGGT-------SG--GGGT-
T ss_pred C----CcCchhHHHHHHHHHHHHHHHHhccc----hhhhHHHH-HHHHHHHHHcCCChHHHHHH-------hc--ccCC-
Confidence 3 39999999999999999999988332 22456666 77899999999864311111 11 0000
Q ss_pred CcCCCCCCCCCCCCCCcCceeEeecccCChH
Q 042759 1010 QKLPMPPTTGRWNRADPNTILRVLCHRNDRA 1040 (1055)
Q Consensus 1010 ~~~p~Ppttg~w~~~DpnTiLRVLChR~D~~ 1040 (1055)
...| .-.|+.+-|||.-|-|-.
T Consensus 233 --------~~~W-~Ls~~E~r~il~lRvDf~ 254 (263)
T 3hr0_A 233 --------PLTW-RLTPAEVRQVLALRIDFR 254 (263)
T ss_dssp --------TCCC-CSCHHHHHHHHTTBTTSC
T ss_pred --------Cccc-cCCHHHHHHHHHhhccCC
Confidence 2356 677888999999998854
No 6
>2ob9_A Tail assembly chaperone; bacteriophage HK97, morphogenesis; 2.30A {Enterobacteria phage HK97}
Probab=55.26 E-value=9.5 Score=37.52 Aligned_cols=38 Identities=24% Similarity=0.259 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhhHHH
Q 042759 908 QALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEE 946 (1055)
Q Consensus 908 r~~vv~~vMkAsfdafL~VLLaGGPsRaF~~~D~~miEE 946 (1055)
+...++ -++|.+-.|..||+|=+.-|.|+++|.+.+-+
T Consensus 62 ~ek~~r-n~rA~~vlf~~vL~DE~g~rvFsd~D~~~v~~ 99 (130)
T 2ob9_A 62 SEKAHR-NLCADVVLFIDVLCDTDKQPVFSVDEEEQVRE 99 (130)
T ss_dssp HHHHHH-HHHHHHHHHHHHEECTTSCBSSCGGGHHHHHT
T ss_pred HHHHHH-hccccHHHHHHHHhcCCCcccCCHHHHHHHHH
Confidence 344443 79999999999999999999999999887653
No 7
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=46.50 E-value=73 Score=38.92 Aligned_cols=95 Identities=13% Similarity=0.237 Sum_probs=68.3
Q ss_pred cccchHHHHHHHHHHHHHHHH-hhhHhhHHHHHHHHHHHHHHHH-HHHHcCCCCcccccchhhhHHHHHHHHHHHHhhCC
Q 042759 882 NARVRPALRTLKQNLTLLSAI-LTDKAQALAIKEVMKASFEAFL-MVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCG 959 (1055)
Q Consensus 882 ~aRI~p~L~~Ldq~L~~i~~~-l~d~~r~~vv~~vMkAsfdafL-~VLLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~G 959 (1055)
++-+-+.|+.|...|.+|... +.-..-.++.+.|...--+=|. -||. .--|+..-..-++-|++.|..+|=
T Consensus 562 SaEL~~~L~~L~~~L~~L~~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~----~nkFS~~Ga~Qf~~D~~~L~~v~~--- 634 (706)
T 3fhn_A 562 SAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFTESILK----LNKFNQNGLNQFLHDFKSLSSILS--- 634 (706)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTTT----TSCBCHHHHHHHHHHHHHHHTTSC---
T ss_pred CHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHh----cCccCHHHHHHHHHHHHHHHHHhc---
Confidence 677999999999999999988 5777666666666655433322 2444 247999999999999999888876
Q ss_pred CCCChhHHHHHHHHhHHHHHhhhcccH
Q 042759 960 EGLIVEDVVDREAETVDGVIGLMGQQT 986 (1055)
Q Consensus 960 eGL~p~evVekea~~v~~Vl~Lm~~~T 986 (1055)
+ |....+..-......+.|+.++-
T Consensus 635 --l-p~~~~~~~~~~L~E~l~LL~L~~ 658 (706)
T 3fhn_A 635 --L-PSHATNYKCMSLHELVKILKLKY 658 (706)
T ss_dssp --C-CTTCCCHHHHHHHHHHHHHGGGG
T ss_pred --C-CCcchhhHHHHHHHHHHHcCCCC
Confidence 4 65444445556666677776664
No 8
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=39.06 E-value=79 Score=34.15 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=56.7
Q ss_pred chHHHHHHHHhhccccCCCcchhhhHHHHHHHHHhh----------------hhccC-----CchhhhHHHHHHHhHHhh
Q 042759 334 LNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKT----------------WSTLG-----INRPIHNVCFTWVLFQQY 392 (1055)
Q Consensus 334 LNvrLYe~LL~aiFD~~dEg~vidEvDElLELiKkT----------------W~iLG-----I~q~lHn~CfaWVLF~Qy 392 (1055)
.|.++.+.||. .+.+..+..+++-++++++.+... |..++ .-.+=||+--+|.|++-+
T Consensus 173 ~~~~~~~all~-l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~ 251 (388)
T 2gz6_A 173 VPMILANLTLE-MEWLLPQETLENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIA 251 (388)
T ss_dssp HHHHHHHHHHH-TGGGSCHHHHHHHHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHH
Confidence 56677666665 577777778899999999988754 32221 123569999999999999
Q ss_pred hhcCCChhHHHHHHHHHHHHH
Q 042759 393 VVTSLSEPDLLCAAHTMLAEL 413 (1055)
Q Consensus 393 V~Tgq~E~dLL~aa~~~L~eV 413 (1055)
..|| ++.++..|...+.-+
T Consensus 252 ~~tg--d~~~~~~A~~~~~~~ 270 (388)
T 2gz6_A 252 RRKN--DSKTINQAVDVVLNI 270 (388)
T ss_dssp HHTT--CHHHHHHHHHHHHHH
T ss_pred HHcC--CHHHHHHHHHHHHHH
Confidence 9999 678888877776543
No 9
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=38.65 E-value=7 Score=39.19 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=24.7
Q ss_pred cchhhhHHHHHHHHHhhhhccCCchhh
Q 042759 353 TLVLDEVDELLELMKKTWSTLGINRPI 379 (1055)
Q Consensus 353 g~vidEvDElLELiKkTW~iLGI~q~l 379 (1055)
-.+..|++++|.++.+.|.-||+|+.|
T Consensus 96 leLn~Eae~~L~l~~~LWdSL~Ln~~i 122 (158)
T 1nrj_A 96 LELNQETQQTLALVLKLWNSLHLSESI 122 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHhcCccHHH
Confidence 356789999999999999999999998
No 10
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=24.22 E-value=70 Score=34.96 Aligned_cols=75 Identities=13% Similarity=0.044 Sum_probs=53.0
Q ss_pred HHHHHHHHhh--ccccCCCcchhhhHHHHHHHHHhh---------------hhcc----C-CchhhhHHHHHHHhHHhhh
Q 042759 336 VHLYIALLQS--IFDFRDETLVLDEVDELLELMKKT---------------WSTL----G-INRPIHNVCFTWVLFQQYV 393 (1055)
Q Consensus 336 vrLYe~LL~a--iFD~~dEg~vidEvDElLELiKkT---------------W~iL----G-I~q~lHn~CfaWVLF~QyV 393 (1055)
.++.+.+|.. .+.+.++. +.+.++++++.++.. |..+ | +..+=|++-.+|.|++-+.
T Consensus 183 m~~~~~~l~l~~l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~ 261 (402)
T 1fp3_A 183 MMLLCLVEQLGEEDEELAGR-YAQLGHWCARRILQHVQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSS 261 (402)
T ss_dssp HHHHHHHHHHHTTCHHHHHH-THHHHHHHHHHHHTTEETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHhCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHHHHHH
Confidence 4777777763 66666665 688999999888544 3111 1 1356788889999999999
Q ss_pred hcCCChhHHHHHHHHHHHHH
Q 042759 394 VTSLSEPDLLCAAHTMLAEL 413 (1055)
Q Consensus 394 ~Tgq~E~dLL~aa~~~L~eV 413 (1055)
+|| +++++..|.....-+
T Consensus 262 ~~~--~~~~l~~A~~~~~~~ 279 (402)
T 1fp3_A 262 RSG--DAKLRAHVIDTFLLL 279 (402)
T ss_dssp HTT--CHHHHHHHHHHHTHH
T ss_pred HcC--ChHHHHHHHHHHHHH
Confidence 999 678888776665444
No 11
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.21 E-value=65 Score=35.27 Aligned_cols=95 Identities=8% Similarity=0.059 Sum_probs=46.2
Q ss_pred ChhHHHHHHHhhhHHHHHHHHhhhcccccCCCCcccccccCcchhhHHhHHHHHHHHHHHHhhhhhHHHhhhhccccCCC
Q 042759 594 KNDTVDVLQRAGKLEKVLVQMVVEDSAECDDGGKGIVREMIPYEVDSIILRQLRLWIQERINRGKECYLRAKESETWNPK 673 (1055)
Q Consensus 594 T~d~v~VL~AAd~LEk~Lvq~~vEdsvd~ddggksvirem~PYeve~~i~~Lv~~Wi~~ql~~l~ewv~Ra~q~E~W~P~ 673 (1055)
.+=.+++-.|.+.|=+.|...+++|.+.-..=.+.. .. ..-............++..++ ..+.+ ...|-+.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~-~~-~~~~~g~~~l~~a~~~l~~~~--~~~~~-----~~~WG~~ 156 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYK-GT-VDCVQARAALDKATVLLSMSK--GGKRK-----DSVWGSG 156 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGT-TT-CCCHHHHHHHHHHHHHHHTCC------C-----CCSSCCC
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHH-hc-ccchHHHHHHHHHHHHhcccc--cHhHH-----hhhcCCC
Confidence 444567778888888888888877665221111111 00 001111111111112222111 11111 2367754
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhhhcCC
Q 042759 674 SKSEPYAQSAVELMRHAKDTVDDFFEIP 701 (1055)
Q Consensus 674 S~~e~~A~SaVEvlRiveETvD~FF~lp 701 (1055)
+.. .+.-|+-+-++.++++||...
T Consensus 157 ~~~----~~~eelkkki~~lL~EY~~~~ 180 (307)
T 2zu6_B 157 GGQ----QSVNHLVKEIDMLLKEYLLSG 180 (307)
T ss_dssp STT----SCHHHHHHHHHHHHHHHHHHC
T ss_pred CCC----CCHHHHHHHHHHHHHHHHcCC
Confidence 432 466788888888888888764
No 12
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=23.94 E-value=1.2e+02 Score=33.67 Aligned_cols=245 Identities=14% Similarity=0.114 Sum_probs=125.9
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH-hccCCCCcccCCCCCCcccccCc
Q 042759 672 PKSKSEPYAQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV-ASCGARQSYLPTLPPLTRCNRDS 750 (1055)
Q Consensus 672 P~S~~e~~A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v-~~cGsk~~liP~lPpLTRc~~~s 750 (1055)
|-...=||.+.+..+.+.|++.+++++..- +-+.--..=+|..+.+|+..+ .... ..
T Consensus 66 ~fP~~lPFS~~vP~~c~~ir~fi~~~~~F~-----~~~~~~~~eidd~lrks~d~LL~~~v-----------------~~ 123 (325)
T 2a2f_X 66 PFPKKFPFSRMVPEVYHQAKEFMYACMKFA-----EELTLSPNEVAAMVRKAANLLLTRSF-----------------SG 123 (325)
T ss_dssp --CCCSSSBTHHHHHHHHHHHHHHHHHHHH-----HHTTCCHHHHHHHHHHHHHHHHHHHH-----------------HH
T ss_pred CCCcccCccHHHHHHHHHHHHHHHHHHHHH-----HhcccCcchHHHHHHHHHHHHHHHHH-----------------HH
Confidence 334667999999999999999999988542 111111234566666666554 2210 01
Q ss_pred chhhhhhhcCCCCCcccccccccCCCCCCCCCCCCcccccchhhhhhhHHHHHHhHhhhhhhcccCCCccCCcccccccc
Q 042759 751 KFSKLWKKASPCTVAVEDVQQINGSNEGHHPRPSTSRGTQRLYIRLNTLHYLVSHIHSLDKTLSLSPKIVPSSRSRFANH 830 (1055)
Q Consensus 751 ~~~~~~Kk~~p~~~p~e~~~~~~~~~~~~~pr~~~s~~t~~LcVRLNTL~yi~~~l~~LEk~i~~~~~~~~S~~~~~~~~ 830 (1055)
.+....+ +.+.+..++.=-+=-|.|+..-.+.||+-|.. .+..++...
T Consensus 124 ~L~~~i~--------------------------~~~~~l~qi~Qi~iNl~~le~ac~~le~~l~~-~~~~~~~~~----- 171 (325)
T 2a2f_X 124 CLSVVFR--------------------------QPSITLTQLIQIIIDTQYLEKAGPFLDEFVCH-MTNTERSVS----- 171 (325)
T ss_dssp HHHHHHT--------------------------CTTSCHHHHHHHHHHHHHHHTTHHHHHHHHHH-HHTCCC--------
T ss_pred HHHHHHh--------------------------ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCcccc-----
Confidence 1111000 00222223222222245666777777776543 222222111
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHH-----HHhhceeeeeeccchhhHhhhccCccccccchHHHHHHHHHHHHHHHHhhh
Q 042759 831 RRHTNSNSYFEHATNAIQSACQHV-----SEVAAYRLIFLDSNSVFYESLYVGDVANARVRPALRTLKQNLTLLSAILTD 905 (1055)
Q Consensus 831 ~~~~~~~~~Fd~ar~a~~~ai~~l-----~E~~AyrlVF~Dlr~~f~d~LY~g~Va~aRI~p~L~~Ldq~L~~i~~~l~d 905 (1055)
......|..+|++|.+.|-.+ -|++ -+.-.| |-.-=..+=+|.=|.-++.-|+.... .-..+..
T Consensus 172 ---l~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl--~la~yD-----W~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~ 240 (325)
T 2a2f_X 172 ---QTPSAMFHVARQDAEKQVGLRICSKIDEFF--ELSAYD-----WLLVEPPGIASAFITDMISYLKSTFD-SFAFKLP 240 (325)
T ss_dssp -------CCSCCCTTHHHHHHHHHHHHHHHHHH--TTCCTT-----CC----CCSCCHHHHHHHHHHHHHHH-TTTTTSH
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcccC-----CCCCCCCCCccHHHHHHHHHHHHHHH-HHHcCCH
Confidence 124567888888877765333 3332 111111 11111112223334444444445554 2346677
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhhHHHHHHHHHHHHhhCC-CCCChhHHHHHHHHhHHHHHhhhc
Q 042759 906 KAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHEMIEEDFDSLKRVFCTCG-EGLIVEDVVDREAETVDGVIGLMG 983 (1055)
Q Consensus 906 ~~r~~vv~~vMkAsfdafL~VLLaGGPsRaF~~~D~~miEEDf~~LK~lF~a~G-eGL~p~evVekea~~v~~Vl~Lm~ 983 (1055)
.++..+....|+-.-+.++-.|| +-.-+.|+..=+.-++-|++.|-+|=-+++ .|| .+......=...+|.++||-
T Consensus 241 ~v~~~~~~~a~~his~~l~~~Ll-~~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~~l-~~~~L~~~F~eLrQli~Ll~ 317 (325)
T 2a2f_X 241 HIAQAACRRTFEHIAEKIYSIMY-DEDVKQISTGALTQINLDLMQCEFFAASEPVPGL-KEGELSKYFLRNRQLLDLLI 317 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-C------CCTTHHHHHHHHHHHHHHHTTCSSSSC-CSSTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCCCc-ccchHHHHHHHHHHHHHHHH
Confidence 88888888888888888888777 445688999999999999999988742311 244 22222233335677777764
No 13
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.02 E-value=51 Score=30.84 Aligned_cols=36 Identities=19% Similarity=0.412 Sum_probs=24.5
Q ss_pred HHhhccCCCCCCChHHHHHHHHHHHHHHHhhhhcCCC
Q 042759 233 ELLRHLKPSEFNDGHEYHLWQRRQLKILEAGLLQHPS 269 (1055)
Q Consensus 233 ELL~~lk~SdF~d~~eY~~Wq~RqlkvLEaGLl~hP~ 269 (1055)
+|++.+++-+= +..+|..|.+.+++|||+..+-|-.
T Consensus 56 ~l~s~l~~f~e-~a~e~vp~L~~~i~vle~~~~~~~~ 91 (94)
T 3fx7_A 56 NLKSTFNEFDE-AAQEQIAWLKERIRVLEEDYLEHHH 91 (94)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHH-hhHHHhHHHHHHHHHhHHHHHHhcc
Confidence 34444443222 5679999999999999999987753
Done!