Query 042759
Match_columns 1055
No_of_seqs 87 out of 89
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 16:00:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042759.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/042759hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bo9a_ a.65.1.1 (A:) Annexin 22.8 8 0.00058 31.6 -0.1 26 1024-1050 20-45 (73)
2 d1i5na_ a.24.10.3 (A:) Chemota 20.0 2E+02 0.015 24.3 8.9 60 299-387 33-92 (128)
3 d1nrja_ d.110.4.4 (A:) Srx dom 15.2 26 0.0019 32.8 1.5 28 353-380 96-123 (155)
4 d1nnva_ d.17.7.1 (A:) Hypothet 14.8 37 0.0027 30.2 2.4 19 31-49 5-23 (107)
5 d2nr5a1 a.25.6.1 (A:1-64) Hypo 14.3 24 0.0018 27.9 0.9 17 654-670 40-56 (64)
6 d1ffya1 a.27.1.1 (A:645-917) I 12.2 37 0.0027 33.1 1.8 51 866-917 71-125 (273)
7 d1orja_ a.24.19.1 (A:) Flagell 10.9 57 0.0041 28.8 2.4 37 337-373 83-119 (126)
8 d1wfza_ d.224.1.2 (A:) Iron-su 10.7 1.2E+02 0.009 27.1 4.8 47 680-727 75-121 (130)
9 d1idra_ a.1.1.1 (A:) Protozoan 10.4 1.2E+02 0.0089 26.1 4.5 77 870-972 30-115 (127)
10 d1o5ha_ a.191.1.1 (A:) Hypothe 10.2 1.3E+02 0.0096 28.6 5.0 63 558-620 12-81 (200)
No 1
>d1bo9a_ a.65.1.1 (A:) Annexin I {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.85 E-value=8 Score=31.56 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=19.1
Q ss_pred CCcCceeEeecccCChHHhHHHHHHhc
Q 042759 1024 ADPNTILRVLCHRNDRAANQFLKKSFQ 1050 (1055)
Q Consensus 1024 ~DpnTiLRVLChR~D~~ASkFLKk~y~ 1050 (1055)
+|-++|.||||+|+...= +-+++.|+
T Consensus 20 tde~~li~Il~~rs~~~l-~~i~~~Y~ 45 (73)
T d1bo9a_ 20 VDEATIIDILTKRNNAQR-QQIKAAYL 45 (73)
T ss_dssp CCSSSHHHHHHHSCSTTH-HHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHH-HHHHHHHH
Confidence 788999999999987653 23555554
No 2
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.01 E-value=2e+02 Score=24.35 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=38.3
Q ss_pred chHHHHHHHHHHhhhhccCCCCCCCCccccCCCCCchHHHHHHHHhhccccCCCcchhhhHHHHHHHHHhhhhccCCchh
Q 042759 299 NSDTMRALCNSVVSLSWRSANGTPTDVCHWADGFPLNVHLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTLGINRP 378 (1055)
Q Consensus 299 ~se~mr~L~~av~sLA~Rs~~G~~~e~CHWADGypLNvrLYe~LL~aiFD~~dEg~vidEvDElLELiKkTW~iLGI~q~ 378 (1055)
+.+.+..|..++++|-+=+ +++.+..=+.+.-+++.+|+.+++... -.+..
T Consensus 33 ~~~~~~~l~R~~HTLKG~a---------------------------~~~gl~~i~~lah~lE~~l~~lr~~~~--~~~~~ 83 (128)
T d1i5na_ 33 DAEQLNAIFRAAHSIKGGA---------------------------GTFGFTILQETTHLMENLLDEARRGEM--QLNTD 83 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHH---------------------------HHTTCHHHHHHHHHHHHHHHHHHTTSS--CCCHH
T ss_pred cHHHHHHHHHHHHHHhhHH---------------------------hhcChHHHHHHHHHHHHHHHHHHhCCC--CCCHH
Confidence 4677778888888876643 223334445566677888888877543 34666
Q ss_pred hhHHHHHHH
Q 042759 379 IHNVCFTWV 387 (1055)
Q Consensus 379 lHn~CfaWV 387 (1055)
+.++++.++
T Consensus 84 ~~~~l~~~~ 92 (128)
T d1i5na_ 84 IINLFLETK 92 (128)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667666655
No 3
>d1nrja_ d.110.4.4 (A:) Srx domain of the signal recognition particle receptor alpha-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.22 E-value=26 Score=32.81 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.6
Q ss_pred cchhhhHHHHHHHHHhhhhccCCchhhh
Q 042759 353 TLVLDEVDELLELMKKTWSTLGINRPIH 380 (1055)
Q Consensus 353 g~vidEvDElLELiKkTW~iLGI~q~lH 380 (1055)
-++..|++++|.|.-+.|.-||+|+.|-
T Consensus 96 leLN~EAe~vl~l~~~LWdSL~Ln~~il 123 (155)
T d1nrja_ 96 LELNQETQQTLALVLKLWNSLHLSESIL 123 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhcCccHHHH
Confidence 3567899999999999999999998763
No 4
>d1nnva_ d.17.7.1 (A:) Hypothetical protein HI1450 {Haemophilus influenzae [TaxId: 727]}
Probab=14.76 E-value=37 Score=30.22 Aligned_cols=19 Identities=26% Similarity=0.690 Sum_probs=16.8
Q ss_pred CCCCChhhHHHHHHHHhhh
Q 042759 31 LEGIDSDDIRETAYEVFFT 49 (1055)
Q Consensus 31 ~~~l~~~dlretayeif~~ 49 (1055)
+..++.||+-++||+||.-
T Consensus 5 ~~~~t~De~id~AYDiFLE 23 (107)
T d1nnva_ 5 IKKLDPDTAIDIAYDIFLE 23 (107)
T ss_dssp CCCCCHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHH
Confidence 5678999999999999974
No 5
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=14.30 E-value=24 Score=27.86 Aligned_cols=17 Identities=29% Similarity=0.380 Sum_probs=11.3
Q ss_pred HhhhhhHHHhhhhcccc
Q 042759 654 INRGKECYLRAKESETW 670 (1055)
Q Consensus 654 l~~l~ewv~Ra~q~E~W 670 (1055)
++.+.-|+.|.++-|+|
T Consensus 40 mqeveiwtnrikeledw 56 (64)
T d2nr5a1 40 MQEVEIWTNRIKELEDW 56 (64)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455677777777777
No 6
>d1ffya1 a.27.1.1 (A:645-917) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=12.16 E-value=37 Score=33.11 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=35.9
Q ss_pred ccchhhHh----hhccCccccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHH
Q 042759 866 DSNSVFYE----SLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMK 917 (1055)
Q Consensus 866 Dlr~~f~d----~LY~g~Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMk 917 (1055)
|+++.++| .||.++..+.+-+.+...|.++|..++-+++ +.=|-+.-++.+
T Consensus 71 ~ls~~Y~~~~Kdrly~~~~ds~~r~~~~~~l~~il~~l~~~la-PilPf~~Eei~~ 125 (273)
T d1ffya1 71 ELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMTKLLA-PILVHTAEEVWS 125 (273)
T ss_dssp CCCCCHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHT-TTSHHHHHHHHT
T ss_pred cchHHHHhhccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 56666664 5899988777777788888888888877665 344555555554
No 7
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=10.90 E-value=57 Score=28.82 Aligned_cols=37 Identities=16% Similarity=0.479 Sum_probs=25.3
Q ss_pred HHHHHHHhhccccCCCcchhhhHHHHHHHHHhhhhcc
Q 042759 337 HLYIALLQSIFDFRDETLVLDEVDELLELMKKTWSTL 373 (1055)
Q Consensus 337 rLYe~LL~aiFD~~dEg~vidEvDElLELiKkTW~iL 373 (1055)
.||.-+...+.......--+|||-++|+-|+.+|..+
T Consensus 83 ~lY~~~~~~L~~a~~~~~~i~e~~~il~~l~eaW~~i 119 (126)
T d1orja_ 83 TIYTIILNTLVKVDKTKEELQKILEILKDLREAWEEV 119 (126)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554444444446899999999999999754
No 8
>d1wfza_ d.224.1.2 (A:) Iron-sulfur cluster protein U (IscU) {Mouse (Mus musculus), mitochondrial [TaxId: 10090]}
Probab=10.75 E-value=1.2e+02 Score=27.13 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHHHhhhcCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 042759 680 AQSAVELMRHAKDTVDDFFEIPIGITDDLVHDLADGLQQLFREYTTFV 727 (1055)
Q Consensus 680 A~SaVEvlRiveETvD~FF~lpvp~~~~ll~~L~~Gld~~lq~Y~~~v 727 (1055)
+.++-|+.+|.++.+.+++++| |++.--..==...|.+++..|..+-
T Consensus 75 Gkt~~ea~~i~~~~i~~~l~l~-p~R~~CA~La~~aL~~Al~~y~~k~ 121 (130)
T d1wfza_ 75 GKTVEEALTIKNTDIAKELCLP-PVKLHCSMLAEDAIKAALADYKLKQ 121 (130)
T ss_dssp TSBHHHHHHCCHHHHHHHHTCC-GGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHhcCcHHHHHHcCCC-cchhhHHHHHHHHHHHHHHHHHHhc
Confidence 3567788888899999999876 4443333333568889999998764
No 9
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=10.36 E-value=1.2e+02 Score=26.08 Aligned_cols=77 Identities=10% Similarity=0.242 Sum_probs=38.2
Q ss_pred hhHhhhccCccccccchHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHcCCCCcccccchhh-------
Q 042759 870 VFYESLYVGDVANARVRPALRTLKQNLTLLSAILTDKAQALAIKEVMKASFEAFLMVLLAGGSSRVFYRSDHE------- 942 (1055)
Q Consensus 870 ~f~d~LY~g~Va~aRI~p~L~~Ldq~L~~i~~~l~d~~r~~vv~~vMkAsfdafL~VLLaGGPsRaF~~~D~~------- 942 (1055)
.||+-++. +.+|.|+-...| .+..+.+ +-.|+..++ |||.. |+-.+..
T Consensus 30 ~FY~~i~~----d~~l~~~F~~~d----------~~~~~~~---------~~~fl~~~~-GGp~~-Y~g~~m~~~H~~l~ 84 (127)
T d1idra_ 30 DFYVRVLA----DDQLSAFFSGTN----------MSRLKGK---------QVEFFAAAL-GGPEP-YTGAPMKQVHQGRG 84 (127)
T ss_dssp HHHHHHHH----CTTTGGGGTTCC----------HHHHHHH---------HHHHHHHHT-TCSCC-CCSCCHHHHHTTSC
T ss_pred HHHHHHHc----ChHHHHhcCCCC----------HHHHHHH---------HHHHHHHHh-CcCCC-CCCccHHHHhcCCC
Confidence 57787776 467777754222 1222222 334554444 88874 6544332
Q ss_pred hHHHHHHHHHHHHhhC--CCCCChhHHHHHHH
Q 042759 943 MIEEDFDSLKRVFCTC--GEGLIVEDVVDREA 972 (1055)
Q Consensus 943 miEEDf~~LK~lF~a~--GeGL~p~evVekea 972 (1055)
+-+++|+...+.|... =-|+ |++++++..
T Consensus 85 I~~~~f~~~~~~l~~al~e~~v-~~~~~~e~l 115 (127)
T d1idra_ 85 ITMHHFSLVAGHLADALTAAGV-PSETITEIL 115 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTC-CHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHcCC-CHHHHHHHH
Confidence 2345666555555432 1123 555544443
No 10
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=10.18 E-value=1.3e+02 Score=28.57 Aligned_cols=63 Identities=10% Similarity=0.150 Sum_probs=52.4
Q ss_pred ccccccccchhHHHHHHhHHhHHHHHHHHHhhcCC-------CChhHHHHHHHhhhHHHHHHHHhhhccc
Q 042759 558 PILKRWHSIAAGVAAVTLHQCYGAVLKQYLAETGT-------LKNDTVDVLQRAGKLEKVLVQMVVEDSA 620 (1055)
Q Consensus 558 PiLkrWhP~A~~VAa~tLH~cYG~~LKqfL~g~s~-------LT~d~v~VL~AAd~LEk~Lvq~~vEdsv 620 (1055)
=-|..-.|.|+|=+|+-|.++.|.-|-.-+..+|. +.++..+++..+..+.+.|.+++-||+.
T Consensus 12 ~~las~~ptPGGGsaaAl~galg~aL~~MVa~lT~~kk~~~~~~~~~~~~~~~~~~~~~~l~~l~deD~~ 81 (200)
T d1o5ha_ 12 DMVAERKPTPGGGAVGSVVGAMACALAEMVANFTRKKKGYEDVEPEMERIVEAMEEARLKLFDLAKKDME 81 (200)
T ss_dssp HHHHSSSSSSCHHHHHHHHHHHHHHHHHHHHHTTTTCTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34555679999999999999999999888776643 4578999999999999999999987763
Done!