Query 042760
Match_columns 167
No_of_seqs 197 out of 1825
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 09:10:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042760.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042760hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.6 1.3E-14 2.9E-19 107.9 11.0 84 52-135 73-156 (160)
2 cd05022 S-100A13 S-100A13: S-1 99.5 9E-14 2E-18 94.4 7.6 71 70-140 7-80 (89)
3 PF13499 EF-hand_7: EF-hand do 99.5 3.2E-13 7E-18 86.0 7.7 62 72-133 1-66 (66)
4 KOG0027 Calmodulin and related 99.4 6.8E-13 1.5E-17 98.1 9.3 84 52-135 62-149 (151)
5 cd05027 S-100B S-100B: S-100B 99.4 1.3E-12 2.8E-17 88.5 8.5 69 70-138 7-82 (88)
6 KOG0027 Calmodulin and related 99.4 2.6E-12 5.7E-17 95.0 7.4 91 69-159 6-97 (151)
7 cd05026 S-100Z S-100Z: S-100Z 99.3 7.8E-12 1.7E-16 85.5 8.2 69 70-138 9-84 (93)
8 cd05029 S-100A6 S-100A6: S-100 99.3 1.3E-11 2.8E-16 83.6 8.2 69 71-139 10-83 (88)
9 cd05025 S-100A1 S-100A1: S-100 99.3 1.4E-11 3.1E-16 83.8 8.4 70 70-139 8-84 (92)
10 cd05031 S-100A10_like S-100A10 99.3 1.4E-11 3E-16 84.2 8.1 67 70-136 7-80 (94)
11 KOG0028 Ca2+-binding protein ( 99.3 2.1E-11 4.6E-16 89.9 9.1 84 52-135 87-170 (172)
12 KOG0031 Myosin regulatory ligh 99.3 3.8E-11 8.2E-16 88.0 10.0 85 50-134 80-164 (171)
13 smart00027 EH Eps15 homology d 99.2 4E-11 8.7E-16 82.2 8.1 71 70-142 9-79 (96)
14 cd00052 EH Eps15 homology doma 99.2 3.9E-11 8.4E-16 76.1 7.0 61 74-136 2-62 (67)
15 cd00213 S-100 S-100: S-100 dom 99.2 4.3E-11 9.2E-16 80.6 7.1 70 69-138 6-82 (88)
16 COG5126 FRQ1 Ca2+-binding prot 99.2 4.5E-11 9.8E-16 89.0 7.6 88 70-158 19-106 (160)
17 PTZ00183 centrin; Provisional 99.2 2.8E-10 6E-15 83.5 10.0 84 52-135 71-154 (158)
18 cd05023 S-100A11 S-100A11: S-1 99.2 2.1E-10 4.6E-15 77.8 8.5 69 70-138 8-83 (89)
19 PF13833 EF-hand_8: EF-hand do 99.2 1.7E-10 3.8E-15 70.6 7.4 52 84-135 1-53 (54)
20 PTZ00184 calmodulin; Provision 99.1 5.8E-10 1.3E-14 80.7 10.1 82 53-134 66-147 (149)
21 cd00051 EFh EF-hand, calcium b 99.1 5.5E-10 1.2E-14 68.3 7.6 61 73-133 2-62 (63)
22 KOG0034 Ca2+/calmodulin-depend 99.1 2.3E-09 5E-14 82.1 10.6 83 53-135 86-175 (187)
23 PTZ00183 centrin; Provisional 99.0 1.9E-09 4.1E-14 79.0 8.5 65 71-135 17-81 (158)
24 KOG0028 Ca2+-binding protein ( 99.0 1.5E-09 3.3E-14 80.1 7.6 85 71-155 33-117 (172)
25 KOG0030 Myosin essential light 99.0 1.2E-09 2.5E-14 79.0 6.4 93 67-160 7-101 (152)
26 PTZ00184 calmodulin; Provision 99.0 2.2E-09 4.8E-14 77.6 7.9 66 71-136 11-76 (149)
27 KOG0030 Myosin essential light 99.0 3.4E-09 7.4E-14 76.6 8.3 68 66-134 83-150 (152)
28 KOG0044 Ca2+ sensor (EF-Hand s 99.0 7.2E-09 1.6E-13 79.6 10.0 102 38-139 28-132 (193)
29 cd05030 calgranulins Calgranul 98.9 3.2E-09 6.9E-14 71.8 6.8 69 70-138 7-82 (88)
30 cd00252 SPARC_EC SPARC_EC; ext 98.9 4E-09 8.7E-14 74.9 7.1 61 69-133 46-106 (116)
31 PF14658 EF-hand_9: EF-hand do 98.9 9.8E-09 2.1E-13 65.4 7.2 61 75-135 2-64 (66)
32 KOG0037 Ca2+-binding protein, 98.8 2.2E-08 4.9E-13 77.4 9.2 68 71-138 124-191 (221)
33 KOG0031 Myosin regulatory ligh 98.8 2.1E-08 4.6E-13 73.7 7.4 85 69-160 30-114 (171)
34 cd05024 S-100A10 S-100A10: A s 98.6 2.5E-07 5.3E-12 62.8 8.2 67 71-138 8-79 (91)
35 PLN02964 phosphatidylserine de 98.6 3.4E-07 7.3E-12 81.6 10.8 63 73-135 181-243 (644)
36 KOG0041 Predicted Ca2+-binding 98.6 1.5E-07 3.3E-12 72.1 7.1 68 71-138 99-166 (244)
37 KOG0044 Ca2+ sensor (EF-Hand s 98.6 1.6E-07 3.5E-12 72.1 7.3 70 66-135 95-175 (193)
38 PF00036 EF-hand_1: EF hand; 98.6 1.1E-07 2.3E-12 51.2 3.9 27 73-99 2-28 (29)
39 PF00036 EF-hand_1: EF hand; 98.5 1.7E-07 3.6E-12 50.4 3.8 29 108-136 1-29 (29)
40 PLN02964 phosphatidylserine de 98.5 4.9E-07 1.1E-11 80.6 7.6 64 70-137 142-209 (644)
41 PF12763 EF-hand_4: Cytoskelet 98.4 2.5E-06 5.4E-11 59.5 8.6 66 69-137 8-73 (104)
42 PF13405 EF-hand_6: EF-hand do 98.4 6.3E-07 1.4E-11 48.7 3.9 30 72-101 1-31 (31)
43 PRK12309 transaldolase/EF-hand 98.3 3.2E-06 7E-11 71.6 9.4 57 67-136 330-386 (391)
44 KOG0038 Ca2+-binding kinase in 98.3 4.8E-06 1E-10 61.1 8.6 64 72-135 109-177 (189)
45 KOG0036 Predicted mitochondria 98.2 3.2E-06 6.9E-11 71.0 7.2 88 70-157 81-169 (463)
46 KOG0377 Protein serine/threoni 98.2 4.2E-06 9E-11 71.0 7.6 68 71-138 547-618 (631)
47 PF14788 EF-hand_10: EF hand; 98.2 5.8E-06 1.3E-10 50.0 6.0 50 87-136 1-50 (51)
48 KOG0036 Predicted mitochondria 98.2 7.7E-06 1.7E-10 68.8 7.9 68 71-138 14-82 (463)
49 KOG0037 Ca2+-binding protein, 98.1 1.1E-05 2.5E-10 62.5 7.3 69 70-138 56-125 (221)
50 PF13202 EF-hand_5: EF hand; P 98.0 1.1E-05 2.5E-10 41.6 3.4 24 73-96 1-24 (25)
51 KOG4065 Uncharacterized conser 97.9 6E-05 1.3E-09 53.1 7.0 66 67-132 62-142 (144)
52 KOG0040 Ca2+-binding actin-bun 97.8 6.1E-05 1.3E-09 71.6 6.9 65 71-135 2253-2324(2399)
53 KOG0046 Ca2+-binding actin-bun 97.7 0.00016 3.4E-09 62.6 8.0 68 71-139 19-89 (627)
54 PF13202 EF-hand_5: EF hand; P 97.7 6.3E-05 1.4E-09 38.8 3.4 25 109-133 1-25 (25)
55 PF13833 EF-hand_8: EF-hand do 97.7 0.00023 5E-09 43.0 6.1 44 55-99 9-53 (54)
56 PF10591 SPARC_Ca_bdg: Secrete 97.7 4.6E-05 9.9E-10 53.8 3.3 60 70-131 53-112 (113)
57 PF13405 EF-hand_6: EF-hand do 97.6 0.0001 2.2E-09 39.7 3.6 27 108-134 1-27 (31)
58 KOG4223 Reticulocalbin, calume 97.5 0.00016 3.4E-09 59.2 5.0 70 66-135 72-141 (325)
59 KOG0034 Ca2+/calmodulin-depend 97.5 0.00051 1.1E-08 52.7 7.3 67 73-139 68-136 (187)
60 KOG4223 Reticulocalbin, calume 97.2 0.00028 6.1E-09 57.7 3.6 64 73-136 243-306 (325)
61 smart00054 EFh EF-hand, calciu 97.1 0.00075 1.6E-08 34.0 3.1 25 74-98 3-27 (29)
62 smart00054 EFh EF-hand, calciu 97.0 0.00085 1.8E-08 33.8 2.9 28 108-135 1-28 (29)
63 KOG2643 Ca2+ binding protein, 97.0 0.00053 1.1E-08 58.3 2.9 83 69-151 231-330 (489)
64 PF13499 EF-hand_7: EF-hand do 97.0 0.00071 1.5E-08 42.4 2.7 32 109-140 2-33 (66)
65 KOG4251 Calcium binding protei 96.9 0.00099 2.1E-08 53.0 3.7 68 69-136 99-169 (362)
66 cd05022 S-100A13 S-100A13: S-1 96.8 0.0086 1.9E-07 40.4 7.1 47 54-100 29-76 (89)
67 KOG0377 Protein serine/threoni 96.5 0.013 2.9E-07 50.2 7.7 69 71-139 464-579 (631)
68 cd05030 calgranulins Calgranul 96.3 0.031 6.6E-07 37.4 7.2 31 70-100 50-80 (88)
69 PF09279 EF-hand_like: Phospho 96.2 0.015 3.3E-07 38.2 5.5 65 72-137 1-71 (83)
70 KOG1029 Endocytic adaptor prot 96.2 0.018 4E-07 52.4 7.4 66 69-136 193-258 (1118)
71 cd05029 S-100A6 S-100A6: S-100 96.1 0.021 4.6E-07 38.4 5.7 48 53-100 31-80 (88)
72 PF14788 EF-hand_10: EF hand; 96.1 0.021 4.6E-07 34.5 5.0 38 63-100 13-50 (51)
73 cd05026 S-100Z S-100Z: S-100Z 96.0 0.019 4.1E-07 38.9 5.0 49 52-100 30-82 (93)
74 KOG0042 Glycerol-3-phosphate d 95.8 0.031 6.8E-07 49.3 6.9 69 73-141 595-663 (680)
75 KOG1955 Ral-GTPase effector RA 95.6 0.027 5.9E-07 49.0 5.5 66 72-139 232-297 (737)
76 cd05023 S-100A11 S-100A11: S-1 95.5 0.035 7.5E-07 37.4 4.9 48 53-100 30-81 (89)
77 cd05027 S-100B S-100B: S-100B 95.5 0.053 1.2E-06 36.4 5.7 37 64-100 44-80 (88)
78 KOG2643 Ca2+ binding protein, 95.4 0.0079 1.7E-07 51.4 1.6 54 86-139 403-457 (489)
79 cd05024 S-100A10 S-100A10: A s 95.3 0.048 1E-06 37.0 5.0 37 64-100 41-77 (91)
80 KOG2562 Protein phosphatase 2 95.0 0.048 1E-06 47.0 5.3 78 75-156 282-363 (493)
81 cd05031 S-100A10_like S-100A10 95.0 0.031 6.7E-07 37.7 3.3 37 66-102 46-82 (94)
82 PF05517 p25-alpha: p25-alpha 95.0 0.23 4.9E-06 36.8 8.2 66 75-140 6-74 (154)
83 cd05025 S-100A1 S-100A1: S-100 94.9 0.077 1.7E-06 35.5 5.1 34 67-100 48-81 (92)
84 KOG4666 Predicted phosphate ac 94.9 0.044 9.5E-07 45.4 4.5 67 67-134 292-358 (412)
85 cd00051 EFh EF-hand, calcium b 94.8 0.091 2E-06 30.9 4.9 32 66-97 31-62 (63)
86 KOG2871 Uncharacterized conser 94.7 0.017 3.8E-07 48.4 1.7 83 69-151 307-390 (449)
87 PF08726 EFhand_Ca_insen: Ca2+ 94.5 0.026 5.6E-07 36.4 1.9 56 68-131 3-65 (69)
88 KOG3866 DNA-binding protein of 94.5 0.058 1.2E-06 44.5 4.2 60 75-134 248-323 (442)
89 KOG2243 Ca2+ release channel ( 94.2 0.074 1.6E-06 51.5 4.9 58 75-133 4061-4118(5019)
90 cd00213 S-100 S-100: S-100 dom 93.9 0.19 4.2E-06 33.1 5.3 33 68-100 48-80 (88)
91 smart00027 EH Eps15 homology d 93.8 0.25 5.5E-06 33.3 5.8 40 67-106 40-84 (96)
92 KOG0038 Ca2+-binding kinase in 93.6 0.15 3.2E-06 37.8 4.5 65 76-140 76-141 (189)
93 cd00052 EH Eps15 homology doma 93.5 0.13 2.8E-06 31.6 3.6 32 69-100 31-62 (67)
94 PF14658 EF-hand_9: EF-hand do 93.3 0.46 1E-05 30.3 6.0 33 67-99 31-64 (66)
95 KOG0169 Phosphoinositide-speci 93.2 0.25 5.3E-06 45.0 6.2 72 69-140 134-205 (746)
96 PF12763 EF-hand_4: Cytoskelet 92.9 0.2 4.2E-06 34.8 4.1 35 65-99 37-71 (104)
97 cd00252 SPARC_EC SPARC_EC; ext 92.7 0.15 3.2E-06 36.1 3.4 29 70-98 79-107 (116)
98 KOG3555 Ca2+-binding proteogly 92.7 0.15 3.2E-06 42.6 3.7 62 70-135 249-310 (434)
99 KOG0035 Ca2+-binding actin-bun 92.6 0.6 1.3E-05 43.5 7.9 68 69-136 745-817 (890)
100 PF05042 Caleosin: Caleosin re 92.4 0.46 9.9E-06 36.0 5.8 63 73-135 9-124 (174)
101 KOG4666 Predicted phosphate ac 92.1 0.34 7.3E-06 40.3 5.2 68 71-138 259-327 (412)
102 KOG0751 Mitochondrial aspartat 91.0 1.1 2.4E-05 39.3 7.3 80 55-136 57-137 (694)
103 KOG0032 Ca2+/calmodulin-depend 90.7 0.32 6.8E-06 41.4 3.8 68 13-85 286-353 (382)
104 KOG4578 Uncharacterized conser 90.6 0.22 4.8E-06 41.3 2.7 66 73-140 335-403 (421)
105 KOG1029 Endocytic adaptor prot 90.1 1.2 2.6E-05 41.1 7.1 68 69-138 11-80 (1118)
106 PF08976 DUF1880: Domain of un 89.1 0.43 9.4E-06 33.7 2.8 32 103-134 3-34 (118)
107 KOG4251 Calcium binding protei 88.9 0.92 2E-05 36.5 4.9 63 73-135 283-345 (362)
108 PF09069 EF-hand_3: EF-hand; 87.3 6.2 0.00014 26.6 7.5 63 70-135 2-75 (90)
109 KOG4347 GTPase-activating prot 87.2 0.78 1.7E-05 41.3 3.9 56 73-129 557-612 (671)
110 KOG2562 Protein phosphatase 2 83.8 3.2 7E-05 36.1 5.9 66 73-138 313-382 (493)
111 PRK12309 transaldolase/EF-hand 83.5 1.2 2.6E-05 38.0 3.3 33 68-100 351-386 (391)
112 KOG0041 Predicted Ca2+-binding 83.5 1.5 3.3E-05 34.1 3.5 30 108-137 100-129 (244)
113 KOG0998 Synaptic vesicle prote 82.6 0.54 1.2E-05 44.0 0.8 68 70-139 282-349 (847)
114 KOG1707 Predicted Ras related/ 81.5 2 4.3E-05 38.5 3.8 60 72-135 316-377 (625)
115 PF07308 DUF1456: Protein of u 77.1 12 0.00026 23.9 5.5 49 88-136 14-62 (68)
116 KOG0751 Mitochondrial aspartat 75.9 11 0.00024 33.3 6.7 62 69-130 177-239 (694)
117 KOG3449 60S acidic ribosomal p 70.9 21 0.00045 25.0 5.8 53 74-131 4-56 (112)
118 PF12174 RST: RCD1-SRO-TAF4 (R 70.1 4.7 0.0001 25.9 2.4 51 87-140 8-58 (70)
119 PLN02228 Phosphoinositide phos 67.5 25 0.00053 31.7 7.1 67 67-135 20-92 (567)
120 PF11116 DUF2624: Protein of u 67.3 27 0.00058 23.3 5.6 54 87-140 14-67 (85)
121 PF05042 Caleosin: Caleosin re 66.1 36 0.00078 25.8 6.8 64 69-133 94-164 (174)
122 PLN02222 phosphoinositide phos 65.5 24 0.00051 31.9 6.6 67 67-135 21-90 (581)
123 TIGR01639 P_fal_TIGR01639 Plas 63.8 19 0.00041 22.3 4.2 47 86-137 8-54 (61)
124 KOG1955 Ral-GTPase effector RA 61.7 8.4 0.00018 34.1 3.0 34 66-99 260-293 (737)
125 PLN02230 phosphoinositide phos 61.5 36 0.00078 30.9 7.0 68 67-135 25-102 (598)
126 cd07313 terB_like_2 tellurium 61.3 11 0.00023 25.4 3.0 51 85-135 13-65 (104)
127 KOG4004 Matricellular protein 61.2 3.8 8.3E-05 31.9 0.8 57 76-134 192-249 (259)
128 PF10591 SPARC_Ca_bdg: Secrete 61.1 11 0.00024 26.4 3.1 24 72-95 89-112 (113)
129 KOG4347 GTPase-activating prot 59.7 17 0.00037 33.0 4.7 70 88-161 535-605 (671)
130 KOG0040 Ca2+-binding actin-bun 58.0 28 0.0006 35.2 5.9 57 72-129 2297-2355(2399)
131 KOG1954 Endocytosis/signaling 56.3 15 0.00034 31.6 3.6 56 73-131 446-501 (532)
132 PLN02952 phosphoinositide phos 55.2 35 0.00076 31.0 5.9 53 85-138 14-68 (599)
133 PLN02952 phosphoinositide phos 54.9 57 0.0012 29.6 7.2 65 69-134 36-109 (599)
134 PF03672 UPF0154: Uncharacteri 54.4 25 0.00055 22.2 3.6 32 85-116 29-60 (64)
135 PF08414 NADPH_Ox: Respiratory 53.4 72 0.0016 22.0 6.5 62 71-138 30-95 (100)
136 KOG0998 Synaptic vesicle prote 51.9 9.7 0.00021 35.9 2.0 67 71-139 11-77 (847)
137 PF03732 Retrotrans_gag: Retro 51.9 60 0.0013 20.6 6.0 70 37-107 10-84 (96)
138 TIGR03573 WbuX N-acetyl sugar 50.1 35 0.00075 28.5 4.9 42 85-132 300-341 (343)
139 PRK00523 hypothetical protein; 49.7 32 0.00069 22.3 3.5 32 85-116 37-68 (72)
140 PF14513 DAG_kinase_N: Diacylg 49.5 62 0.0013 23.6 5.5 36 84-119 45-81 (138)
141 TIGR01848 PHA_reg_PhaR polyhyd 48.6 36 0.00078 23.7 3.9 62 78-140 10-81 (107)
142 PTZ00373 60S Acidic ribosomal 48.2 86 0.0019 22.0 5.8 52 75-131 7-58 (112)
143 PF09279 EF-hand_like: Phospho 47.1 33 0.00072 21.9 3.5 31 108-139 1-31 (83)
144 PF01023 S_100: S-100/ICaBP ty 47.1 52 0.0011 18.9 3.9 29 71-99 6-36 (44)
145 PF09373 PMBR: Pseudomurein-bi 46.9 25 0.00055 18.8 2.4 19 121-139 2-20 (33)
146 PF00404 Dockerin_1: Dockerin 46.4 29 0.00064 16.8 2.3 13 118-130 2-14 (21)
147 COG3763 Uncharacterized protei 46.2 37 0.00081 21.8 3.4 33 85-117 36-68 (71)
148 PF01885 PTS_2-RNA: RNA 2'-pho 45.3 44 0.00096 25.4 4.4 38 81-118 26-63 (186)
149 PF08461 HTH_12: Ribonuclease 44.4 27 0.0006 21.8 2.7 37 84-120 10-46 (66)
150 PF09068 EF-hand_2: EF hand; 44.3 1.1E+02 0.0025 21.7 9.3 66 69-134 39-124 (127)
151 PF11829 DUF3349: Protein of u 43.7 38 0.00081 23.2 3.4 54 63-116 31-85 (96)
152 PRK01844 hypothetical protein; 42.3 47 0.001 21.5 3.4 31 86-116 37-67 (72)
153 PRK00819 RNA 2'-phosphotransfe 42.2 62 0.0013 24.6 4.7 44 81-127 27-70 (179)
154 KOG3077 Uncharacterized conser 42.0 1.7E+02 0.0036 23.8 7.3 72 67-138 60-132 (260)
155 KOG3555 Ca2+-binding proteogly 41.9 23 0.0005 30.0 2.5 63 71-133 211-276 (434)
156 PF03979 Sigma70_r1_1: Sigma-7 40.2 29 0.00062 22.6 2.3 32 85-118 19-50 (82)
157 KOG1707 Predicted Ras related/ 40.1 47 0.001 30.1 4.3 68 72-139 196-269 (625)
158 PF02761 Cbl_N2: CBL proto-onc 39.8 1.1E+02 0.0025 20.4 6.2 48 86-133 21-68 (85)
159 KOG1265 Phospholipase C [Lipid 39.8 1.1E+02 0.0025 29.3 6.7 65 71-135 221-299 (1189)
160 PLN02223 phosphoinositide phos 39.4 1E+02 0.0022 27.6 6.3 68 67-135 12-92 (537)
161 KOG0169 Phosphoinositide-speci 37.1 1.4E+02 0.003 27.9 6.8 67 67-137 168-234 (746)
162 PF07499 RuvA_C: RuvA, C-termi 35.8 78 0.0017 18.2 3.5 37 91-131 4-40 (47)
163 cd05833 Ribosomal_P2 Ribosomal 34.7 1.2E+02 0.0025 21.2 4.8 55 75-134 5-59 (109)
164 KOG4065 Uncharacterized conser 32.8 35 0.00075 24.4 1.9 24 73-96 119-142 (144)
165 PRK14981 DNA-directed RNA poly 31.8 78 0.0017 22.0 3.6 26 90-115 81-106 (112)
166 PF07879 PHB_acc_N: PHB/PHA ac 31.2 98 0.0021 19.5 3.5 22 78-99 10-31 (64)
167 PF09068 EF-hand_2: EF hand; 31.1 74 0.0016 22.7 3.4 28 73-100 99-126 (127)
168 PF13717 zinc_ribbon_4: zinc-r 30.2 19 0.00042 19.8 0.2 21 3-23 12-32 (36)
169 cd00086 homeodomain Homeodomai 28.2 1.3E+02 0.0027 17.3 5.0 38 71-115 13-50 (59)
170 PF09336 Vps4_C: Vps4 C termin 27.9 87 0.0019 19.3 2.9 26 87-112 29-54 (62)
171 cd07176 terB tellurite resista 27.8 21 0.00045 23.9 0.1 12 85-96 16-27 (111)
172 PF05099 TerB: Tellurite resis 27.3 25 0.00055 24.7 0.5 48 85-132 37-86 (140)
173 PF00046 Homeobox: Homeobox do 27.2 1.3E+02 0.0029 17.4 4.5 36 72-114 14-49 (57)
174 KOG0039 Ferric reductase, NADH 26.9 1.1E+02 0.0024 28.0 4.6 67 67-134 14-88 (646)
175 TIGR02675 tape_meas_nterm tape 26.5 69 0.0015 20.5 2.4 16 84-99 27-42 (75)
176 cd07316 terB_like_DjlA N-termi 26.5 1.9E+02 0.0042 19.0 4.8 12 124-135 53-64 (106)
177 PHA02105 hypothetical protein 25.5 1.7E+02 0.0037 18.1 3.8 48 87-134 4-56 (68)
178 KOG4578 Uncharacterized conser 25.3 87 0.0019 26.5 3.3 31 70-100 369-399 (421)
179 KOG0033 Ca2+/calmodulin-depend 24.4 46 0.001 27.3 1.5 42 16-62 263-304 (355)
180 COG1460 Uncharacterized protei 24.4 1.1E+02 0.0025 21.5 3.3 29 89-117 81-109 (114)
181 PF12631 GTPase_Cys_C: Catalyt 23.8 1.2E+02 0.0027 19.0 3.2 44 73-116 25-72 (73)
182 PF08044 DUF1707: Domain of un 23.1 1.1E+02 0.0025 18.2 2.8 30 85-114 21-50 (53)
183 COG4103 Uncharacterized protei 22.5 1.5E+02 0.0034 21.8 3.8 57 75-134 34-93 (148)
184 KOG0506 Glutaminase (contains 22.0 2.2E+02 0.0047 25.5 5.2 59 76-134 91-157 (622)
185 PF11848 DUF3368: Domain of un 22.0 1.7E+02 0.0038 16.8 3.6 31 85-115 15-46 (48)
186 PF11593 Med3: Mediator comple 21.8 1.6E+02 0.0034 25.2 4.2 14 123-136 42-55 (379)
187 PRK09430 djlA Dna-J like membr 21.7 1.7E+02 0.0037 23.5 4.4 48 84-135 68-120 (267)
188 PF10437 Lip_prot_lig_C: Bacte 21.3 1.9E+02 0.0041 18.6 3.8 42 90-133 44-86 (86)
189 PLN00138 large subunit ribosom 21.2 3E+02 0.0065 19.3 5.1 45 82-131 12-56 (113)
190 PLN03225 Serine/threonine-prot 20.5 1.1E+02 0.0025 27.2 3.4 57 74-132 487-545 (566)
191 KOG2419 Phosphatidylserine dec 20.1 82 0.0018 29.1 2.3 64 73-136 439-534 (975)
192 PHA03041 virion core protein; 20.1 1.9E+02 0.004 21.4 3.7 31 3-34 60-90 (153)
193 KOG3866 DNA-binding protein of 20.0 1.1E+02 0.0023 25.8 2.8 47 89-135 225-272 (442)
194 cd04411 Ribosomal_P1_P2_L12p R 20.0 3.1E+02 0.0067 18.9 5.0 42 88-134 17-58 (105)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.60 E-value=1.3e-14 Score=107.87 Aligned_cols=84 Identities=26% Similarity=0.339 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 52 NWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
.+..|...+...+....++++++.+|+.||.|++|+|+..+|+.+++.+|..+++++++.+++.+|.|++|.|+|++|+.
T Consensus 73 df~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~eF~~ 152 (160)
T COG5126 73 DFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEEFKK 152 (160)
T ss_pred CHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHHHHH
Confidence 45688888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 042760 132 LLNI 135 (167)
Q Consensus 132 ~l~~ 135 (167)
++..
T Consensus 153 ~~~~ 156 (160)
T COG5126 153 LIKD 156 (160)
T ss_pred HHhc
Confidence 7753
No 2
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.50 E-value=9e-14 Score=94.37 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=65.3
Q ss_pred HHHHHHHhhhhcC-CCCCceeHHHHHHHHHH-cCCCCCH-HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 70 QQHLKSVFLRYDT-DGDGRLSNQELKDSFDS-LGSRVPD-WRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 70 ~e~l~~~F~~~D~-d~~G~Is~~el~~~l~~-lg~~~~~-~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
...++.+|+.||+ +++|+|+.+||+.+|+. +|..++. ++++.+++.+|.|+||.|+|+||+.+|..+....
T Consensus 7 i~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~~~~ 80 (89)
T cd05022 7 IETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELAKAV 80 (89)
T ss_pred HHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHH
Confidence 4568999999999 99999999999999999 9988888 9999999999999999999999999999886543
No 3
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.46 E-value=3.2e-13 Score=86.03 Aligned_cols=62 Identities=31% Similarity=0.527 Sum_probs=55.0
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHH----HHHHHhcCCCCCCceeHHHHHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRA----WRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el----~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
.|+++|+.+|.|++|+|+.+||+.+++.++...+.+++ +.+++.+|.|++|.|+|+||+.+|
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 37899999999999999999999999999977665554 555999999999999999999875
No 4
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.44 E-value=6.8e-13 Score=98.13 Aligned_cols=84 Identities=26% Similarity=0.380 Sum_probs=72.3
Q ss_pred cHHHHHHHHHHhhcccc----hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHH
Q 042760 52 NWLWFIDENYAQVKASL----TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQ 127 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~----~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~ 127 (167)
.+..|...+........ ..++++++|+.||+|++|+||.+||+.+|..+|...+.++++.+++.+|.|++|.|+|+
T Consensus 62 ~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ 141 (151)
T KOG0027|consen 62 DFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKVNFE 141 (151)
T ss_pred cHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHH
Confidence 34466666655444333 34689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 042760 128 SSMSLLNI 135 (167)
Q Consensus 128 EF~~~l~~ 135 (167)
+|+.+|..
T Consensus 142 ef~~~m~~ 149 (151)
T KOG0027|consen 142 EFVKMMSG 149 (151)
T ss_pred HHHHHHhc
Confidence 99998863
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.42 E-value=1.3e-12 Score=88.55 Aligned_cols=69 Identities=25% Similarity=0.327 Sum_probs=63.4
Q ss_pred HHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 70 QQHLKSVFLRYD-TDGDG-RLSNQELKDSFDS-----LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 70 ~e~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-----lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
...++.+|+.|| ++++| +|+.+||+.+|+. +|...++++++++++.+|.|++|.|+|+||+.++..+..
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~~ 82 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVTT 82 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 356899999998 79999 5999999999999 898899999999999999999999999999999887654
No 6
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=2.6e-12 Score=94.98 Aligned_cols=91 Identities=27% Similarity=0.371 Sum_probs=75.3
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhh-hhc
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQE-IDN 147 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~-~~~ 147 (167)
...+++.+|+.||.+++|+|+..||..+++.+|..++..++..++..+|.+++|.|+++||+.++........... ...
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~ 85 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSE 85 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHH
Confidence 3567999999999999999999999999999999999999999999999999999999999999987765433221 222
Q ss_pred ccccceeeecCC
Q 042760 148 YHLNVFVLFAEP 159 (167)
Q Consensus 148 ~~~~~~~~~~~~ 159 (167)
-...+|.+|+.-
T Consensus 86 el~eaF~~fD~d 97 (151)
T KOG0027|consen 86 ELKEAFRVFDKD 97 (151)
T ss_pred HHHHHHHHHccC
Confidence 334556666644
No 7
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.33 E-value=7.8e-12 Score=85.49 Aligned_cols=69 Identities=25% Similarity=0.286 Sum_probs=60.0
Q ss_pred HHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-c----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 70 QQHLKSVFLRYD-TDGDG-RLSNQELKDSFDS-L----GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 70 ~e~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-l----g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
...+..+|..|| +|++| +||.+||+.+|.. + +...+..+++++++.+|.|++|.|+|+||+.++..+.-
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~~ 84 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALTV 84 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 356889999999 78998 5999999999976 3 33457889999999999999999999999999988754
No 8
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=1.3e-11 Score=83.64 Aligned_cols=69 Identities=26% Similarity=0.357 Sum_probs=62.5
Q ss_pred HHHHHHhhhhcC-CC-CCceeHHHHHHHHHH---cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 71 QHLKSVFLRYDT-DG-DGRLSNQELKDSFDS---LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 71 e~l~~~F~~~D~-d~-~G~Is~~el~~~l~~---lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
..|..+|..||. ++ +|+|+.+||+.+|+. +|..+++++++++++.+|.|++|+|+|+||+.++..+...
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHH
Confidence 458899999998 77 899999999999973 6889999999999999999999999999999999887653
No 9
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.31 E-value=1.4e-11 Score=83.83 Aligned_cols=70 Identities=29% Similarity=0.325 Sum_probs=61.7
Q ss_pred HHHHHHHhhhhc-CCCCC-ceeHHHHHHHHHH-cC----CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 70 QQHLKSVFLRYD-TDGDG-RLSNQELKDSFDS-LG----SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 70 ~e~l~~~F~~~D-~d~~G-~Is~~el~~~l~~-lg----~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
.+.++++|..|| .+++| +|+..||+.+|+. +| ..++.++++++++.+|.+++|.|+|+||+.++..+...
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHH
Confidence 467999999997 99999 5999999999985 54 34688999999999999999999999999999877653
No 10
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.30 E-value=1.4e-11 Score=84.21 Aligned_cols=67 Identities=28% Similarity=0.308 Sum_probs=60.5
Q ss_pred HHHHHHHhhhhcC-CC-CCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 70 QQHLKSVFLRYDT-DG-DGRLSNQELKDSFDS-----LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 70 ~e~l~~~F~~~D~-d~-~G~Is~~el~~~l~~-----lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
...++.+|..||. |+ +|+|+.+||+.+|+. +|..++.++++.+++.+|.+++|.|+|+||+.++..+
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 4569999999997 97 699999999999986 5678899999999999999999999999999988754
No 11
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.29 E-value=2.1e-11 Score=89.87 Aligned_cols=84 Identities=21% Similarity=0.308 Sum_probs=77.7
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 52 NWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
.+..|...+...+....+.+++..+|+.+|.|++|.||..+|+.+.+.||.+++++++.+++.++|.+++|-|+-+||..
T Consensus 87 ~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~~ 166 (172)
T KOG0028|consen 87 TFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFIR 166 (172)
T ss_pred chHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHHH
Confidence 34567777777888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 042760 132 LLNI 135 (167)
Q Consensus 132 ~l~~ 135 (167)
+|+.
T Consensus 167 imk~ 170 (172)
T KOG0028|consen 167 IMKK 170 (172)
T ss_pred HHhc
Confidence 8864
No 12
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.28 E-value=3.8e-11 Score=88.03 Aligned_cols=85 Identities=15% Similarity=0.306 Sum_probs=81.1
Q ss_pred cccHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHH
Q 042760 50 PRNWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSS 129 (167)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF 129 (167)
|..+..|......++....+++.|..+|+.||.++.|.|..+.|+.+|...|.+++++||+.+++.+-.|..|.|+|.+|
T Consensus 80 PINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~ 159 (171)
T KOG0031|consen 80 PINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAF 159 (171)
T ss_pred CeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHH
Confidence 66777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 042760 130 MSLLN 134 (167)
Q Consensus 130 ~~~l~ 134 (167)
+.++.
T Consensus 160 ~~~it 164 (171)
T KOG0031|consen 160 TYIIT 164 (171)
T ss_pred HHHHH
Confidence 99886
No 13
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.25 E-value=4e-11 Score=82.21 Aligned_cols=71 Identities=15% Similarity=0.286 Sum_probs=64.0
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhh
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIIC 142 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~ 142 (167)
..+++.+|..+|.+++|.|+.++++.+|+.+| ++.+++..++..+|.+++|.|+|+||+.++..+.+-..+
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g 79 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNG 79 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcC
Confidence 45699999999999999999999999999875 688999999999999999999999999999887665543
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.23 E-value=3.9e-11 Score=76.12 Aligned_cols=61 Identities=23% Similarity=0.358 Sum_probs=56.4
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 74 KSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 74 ~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
+.+|..+|.+++|.|+.+|++.++..+|. +.+++..+++.+|.+++|.|+|+||+.++..+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 57899999999999999999999999874 88899999999999999999999999988754
No 15
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.22 E-value=4.3e-11 Score=80.62 Aligned_cols=70 Identities=23% Similarity=0.276 Sum_probs=61.4
Q ss_pred hHHHHHHHhhhhcC--CCCCceeHHHHHHHHHH-cCCCC----CHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 69 TQQHLKSVFLRYDT--DGDGRLSNQELKDSFDS-LGSRV----PDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 69 ~~e~l~~~F~~~D~--d~~G~Is~~el~~~l~~-lg~~~----~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..++++.+|..||+ +++|.|+.++|+.+++. +|..+ +.+++++++..+|.+++|.|+|++|+.++..+..
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~~ 82 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLAV 82 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHHH
Confidence 34568999999999 89999999999999986 55443 5899999999999999999999999999987754
No 16
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.22 E-value=4.5e-11 Score=89.02 Aligned_cols=88 Identities=19% Similarity=0.195 Sum_probs=74.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhccc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDNYH 149 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~~ 149 (167)
.++++++|..+|++++|.|+..+|..+++.+|.+++..++.+++..+|. +.+.|+|.+|+.+|..........+.=.+.
T Consensus 19 i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~a 97 (160)
T COG5126 19 IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREA 97 (160)
T ss_pred HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHH
Confidence 4679999999999999999999999999999999999999999999998 889999999999999887765544444555
Q ss_pred ccceeeecC
Q 042760 150 LNVFVLFAE 158 (167)
Q Consensus 150 ~~~~~~~~~ 158 (167)
..+|+.-+.
T Consensus 98 F~~fD~d~d 106 (160)
T COG5126 98 FKLFDKDHD 106 (160)
T ss_pred HHHhCCCCC
Confidence 555555443
No 17
>PTZ00183 centrin; Provisional
Probab=99.17 E-value=2.8e-10 Score=83.47 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=71.0
Q ss_pred cHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 52 NWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
.+..|...+..........+.++.+|+.+|.+++|+|+..||..++..+|..++.+++..++..+|.+++|.|+|++|+.
T Consensus 71 ~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~~ 150 (158)
T PTZ00183 71 DFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFYR 150 (158)
T ss_pred eHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 34456555544444455667899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHH
Q 042760 132 LLNI 135 (167)
Q Consensus 132 ~l~~ 135 (167)
++..
T Consensus 151 ~~~~ 154 (158)
T PTZ00183 151 IMKK 154 (158)
T ss_pred HHhc
Confidence 8753
No 18
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.17 E-value=2.1e-10 Score=77.82 Aligned_cols=69 Identities=26% Similarity=0.260 Sum_probs=60.1
Q ss_pred HHHHHHHhhh-hcCCCCC-ceeHHHHHHHHHHc-----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 70 QQHLKSVFLR-YDTDGDG-RLSNQELKDSFDSL-----GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 70 ~e~l~~~F~~-~D~d~~G-~Is~~el~~~l~~l-----g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
...|..+|+. +|.+++| +|+.+||+.++... +...++.+++++++.+|.|+||.|+|+||+.++..+..
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~~ 83 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLAV 83 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 3568899999 7888876 99999999999875 34567789999999999999999999999999988754
No 19
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.17 E-value=1.7e-10 Score=70.61 Aligned_cols=52 Identities=23% Similarity=0.416 Sum_probs=49.0
Q ss_pred CCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 84 GDGRLSNQELKDSFDSLGSR-VPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 84 ~~G~Is~~el~~~l~~lg~~-~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
.+|.|+.++|+.+|..+|.. ++.++++.++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 99999999999999999999999999998864
No 20
>PTZ00184 calmodulin; Provisional
Probab=99.13 E-value=5.8e-10 Score=80.67 Aligned_cols=82 Identities=24% Similarity=0.396 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 042760 53 WLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSL 132 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~ 132 (167)
+..|...+..........+.+..+|+.+|.+++|+|+..++..++..+|..++.+++..++..+|.+++|.|+|+||+.+
T Consensus 66 ~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~ 145 (149)
T PTZ00184 66 FPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKM 145 (149)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHHHH
Confidence 34555544443333445667899999999999999999999999999998999999999999999999999999999987
Q ss_pred HH
Q 042760 133 LN 134 (167)
Q Consensus 133 l~ 134 (167)
+.
T Consensus 146 ~~ 147 (149)
T PTZ00184 146 MM 147 (149)
T ss_pred Hh
Confidence 64
No 21
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.11 E-value=5.5e-10 Score=68.31 Aligned_cols=61 Identities=33% Similarity=0.495 Sum_probs=57.8
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
+..+|..+|.+++|.|+.+++..++..++...+.+.+..++..+|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999998765
No 22
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.05 E-value=2.3e-09 Score=82.08 Aligned_cols=83 Identities=25% Similarity=0.305 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCC--HHH----HHHHHHhcCCCCCCcee
Q 042760 53 WLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL-GSRVP--DWR----AWRCHCYADLNGDGCIR 125 (167)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~~~~--~~e----l~~l~~~~D~d~dG~I~ 125 (167)
...|.....-........++++-+|+.||.+++|+|+++|+..++..+ +...+ ++. ++.++.++|.|+||+|+
T Consensus 86 F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~Is 165 (187)
T KOG0034|consen 86 FEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKIS 165 (187)
T ss_pred HHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCc
Confidence 334444444333334445689999999999999999999999999986 33444 443 56789999999999999
Q ss_pred HHHHHHHHHH
Q 042760 126 RQSSMSLLNI 135 (167)
Q Consensus 126 ~~EF~~~l~~ 135 (167)
|+||..++..
T Consensus 166 feEf~~~v~~ 175 (187)
T KOG0034|consen 166 FEEFCKVVEK 175 (187)
T ss_pred HHHHHHHHHc
Confidence 9999988753
No 23
>PTZ00183 centrin; Provisional
Probab=99.01 E-value=1.9e-09 Score=79.00 Aligned_cols=65 Identities=25% Similarity=0.372 Sum_probs=41.3
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
.++..+|..+|.+++|.|+..||..+++.+|..++..++..++..+|.+++|.|+|+||+.++..
T Consensus 17 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 17 KEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 34666666666666666666666666666665556666666666666666666666666665543
No 24
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1.5e-09 Score=80.09 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=71.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhcccc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDNYHL 150 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~~~ 150 (167)
++++.+|..||.+++|+|+..||..+++.+|..+..+++.+++..+|.++.|.|+|++|+..|..........+.-....
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~af 112 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAF 112 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHH
Confidence 56999999999999999999999999999999999999999999999999999999999999887655544444434444
Q ss_pred cceee
Q 042760 151 NVFVL 155 (167)
Q Consensus 151 ~~~~~ 155 (167)
..+++
T Consensus 113 rl~D~ 117 (172)
T KOG0028|consen 113 RLFDD 117 (172)
T ss_pred Hcccc
Confidence 44443
No 25
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.99 E-value=1.2e-09 Score=78.99 Aligned_cols=93 Identities=14% Similarity=0.264 Sum_probs=76.9
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC--CCCceeHHHHHHHHHHHhcchhhhh
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLN--GDGCIRRQSSMSLLNILSNTIICQE 144 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d--~dG~I~~~EF~~~l~~l~~~~~~~~ 144 (167)
+.+.++++++|..||..+||+|+......+|+.+|.++++.++.+.+..++.+ +--+|+|++|+.+++.+.+....-+
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t 86 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGT 86 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCc
Confidence 44568899999999999999999999999999999999999999999999877 4468999999999999988865433
Q ss_pred hhcccccceeeecCCC
Q 042760 145 IDNYHLNVFVLFAEPG 160 (167)
Q Consensus 145 ~~~~~~~~~~~~~~~~ 160 (167)
.+.|-.. .++|++.|
T Consensus 87 ~edfveg-LrvFDkeg 101 (152)
T KOG0030|consen 87 YEDFVEG-LRVFDKEG 101 (152)
T ss_pred HHHHHHH-HHhhcccC
Confidence 3333322 36777655
No 26
>PTZ00184 calmodulin; Provisional
Probab=98.99 E-value=2.2e-09 Score=77.60 Aligned_cols=66 Identities=26% Similarity=0.394 Sum_probs=47.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
++++..|..+|.+++|.|+.+||..++..++..++.+++..+++.+|.+++|.|+|++|+.++...
T Consensus 11 ~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 11 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 456677777777777777777777777777766666677777777777777777777777766543
No 27
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.98 E-value=3.4e-09 Score=76.61 Aligned_cols=68 Identities=16% Similarity=0.307 Sum_probs=61.6
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
.+.+-+++.+.++.||++++|.|...||+.+|..+|..++++|++.++... .|++|.|+|+.|+..+.
T Consensus 83 ~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 83 DQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred ccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 455678899999999999999999999999999999999999999999986 47889999999998653
No 28
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.96 E-value=7.2e-09 Score=79.58 Aligned_cols=102 Identities=16% Similarity=0.250 Sum_probs=82.7
Q ss_pred HHHHHHhHHhhCcccH---HHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042760 38 VISQTKGIRKNCPRNW---LWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHC 114 (167)
Q Consensus 38 v~~~~k~~~~~~~~~~---~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~ 114 (167)
+..+.+.+...||... ..|+...........+..-...+|+.||.|++|.|+..||..+|..+.....++-+...|+
T Consensus 28 i~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~ 107 (193)
T KOG0044|consen 28 IQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFR 107 (193)
T ss_pred HHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhhe
Confidence 3445566666666543 4677776666665566666889999999999999999999999988877778888999999
Q ss_pred hcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 115 YADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 115 ~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
.+|.|++|+|+++|++.+++.+..-
T Consensus 108 lyD~dgdG~It~~Eml~iv~~i~~m 132 (193)
T KOG0044|consen 108 LYDLDGDGYITKEEMLKIVQAIYQM 132 (193)
T ss_pred eecCCCCceEcHHHHHHHHHHHHHH
Confidence 9999999999999999999887553
No 29
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.94 E-value=3.2e-09 Score=71.79 Aligned_cols=69 Identities=17% Similarity=0.170 Sum_probs=59.6
Q ss_pred HHHHHHHhhhhcCC--CCCceeHHHHHHHHH-HcCCCCC----HHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 70 QQHLKSVFLRYDTD--GDGRLSNQELKDSFD-SLGSRVP----DWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 70 ~e~l~~~F~~~D~d--~~G~Is~~el~~~l~-~lg~~~~----~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
...+...|..++.. .+|+|+.+||+.+|. .++..++ +++++.+++.+|.+++|.|+|+||+.++..+..
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 35688999999865 489999999999997 5666666 899999999999999999999999999987644
No 30
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.93 E-value=4e-09 Score=74.91 Aligned_cols=61 Identities=21% Similarity=0.185 Sum_probs=54.1
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
-..++..+|..+|.|+||+||.+||..+. .......+..++..+|.|+||.|+++||...+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 34669999999999999999999999876 23456778999999999999999999999988
No 31
>PF14658 EF-hand_9: EF-hand domain
Probab=98.89 E-value=9.8e-09 Score=65.42 Aligned_cols=61 Identities=15% Similarity=0.220 Sum_probs=57.4
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCC-CceeHHHHHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLGS-RVPDWRAWRCHCYADLNGD-GCIRRQSSMSLLNI 135 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg~-~~~~~el~~l~~~~D~d~d-G~I~~~EF~~~l~~ 135 (167)
.+|..||.++.|.|....+...|+.++. .+++++++.+...+|.++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 4799999999999999999999999998 8899999999999999988 99999999999874
No 32
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.85 E-value=2.2e-08 Score=77.38 Aligned_cols=68 Identities=24% Similarity=0.297 Sum_probs=62.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..++.+|+.+|+|++|.|+..||+.+|..+|..++.+-++.+++.+|.-++|.|+|++|+.++..+..
T Consensus 124 ~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~ 191 (221)
T KOG0037|consen 124 NQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVVLQR 191 (221)
T ss_pred HHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999877999999999998876644
No 33
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.80 E-value=2.1e-08 Score=73.69 Aligned_cols=85 Identities=25% Similarity=0.267 Sum_probs=69.8
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhcc
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDNY 148 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~ 148 (167)
+..+++++|..+|+|+||.|+.++|+..+.++|...++++++.++++. .|-|+|.-|++++-.-...... +.-
T Consensus 30 QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea----~gPINft~FLTmfGekL~gtdp---e~~ 102 (171)
T KOG0031|consen 30 QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEA----PGPINFTVFLTMFGEKLNGTDP---EEV 102 (171)
T ss_pred HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhC----CCCeeHHHHHHHHHHHhcCCCH---HHH
Confidence 457899999999999999999999999999999999999999999985 4789999999988765554432 112
Q ss_pred cccceeeecCCC
Q 042760 149 HLNVFVLFAEPG 160 (167)
Q Consensus 149 ~~~~~~~~~~~~ 160 (167)
-.++|..|++.|
T Consensus 103 I~~AF~~FD~~~ 114 (171)
T KOG0031|consen 103 ILNAFKTFDDEG 114 (171)
T ss_pred HHHHHHhcCccC
Confidence 345677887763
No 34
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.64 E-value=2.5e-07 Score=62.82 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=56.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHH-----cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDS-----LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~-----lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..|..+|..|- .+.|.|+..||+.+|++ +...-.+..++++++.+|.|+||.|+|+||+.++..+.-
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 45778899998 44679999999999975 244456788999999999999999999999999988754
No 35
>PLN02964 phosphatidylserine decarboxylase
Probab=98.62 E-value=3.4e-07 Score=81.57 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=60.0
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
+..+|..+|.|++|.|+.+||..+|..++...+++++.++|+.+|.|++|.|+++||..++..
T Consensus 181 i~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 181 ARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 899999999999999999999999999988889999999999999999999999999999877
No 36
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.60 E-value=1.5e-07 Score=72.07 Aligned_cols=68 Identities=22% Similarity=0.263 Sum_probs=62.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..+..+|+.+|.+.||+|+..||+.+|..+|.+-+.--+..+++++|.|.+|+|+|-||+-++.....
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaa 166 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA 166 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999989888999999999999999999999988876544
No 37
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.60 E-value=1.6e-07 Score=72.12 Aligned_cols=70 Identities=26% Similarity=0.374 Sum_probs=57.7
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc----CC-------CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL----GS-------RVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l----g~-------~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
....++.+.-+|+.||.|++|+|++.|+..+++.. +. ..+.+-++.+|+.+|.|.||.|+++||+....
T Consensus 95 rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 95 RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 34456778899999999999999999999988764 31 12345588999999999999999999998765
Q ss_pred H
Q 042760 135 I 135 (167)
Q Consensus 135 ~ 135 (167)
.
T Consensus 175 ~ 175 (193)
T KOG0044|consen 175 A 175 (193)
T ss_pred h
Confidence 4
No 38
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.57 E-value=1.1e-07 Score=51.17 Aligned_cols=27 Identities=37% Similarity=0.767 Sum_probs=15.5
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDS 99 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~ 99 (167)
++.+|+.+|+|++|+|+.+||..+|++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 455555556666666666555555544
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.52 E-value=1.7e-07 Score=50.39 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 108 RAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 108 el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
|++++|+.+|.|++|+|+++||+.+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999998753
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.46 E-value=4.9e-07 Score=80.56 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHH---HHHHHHhcCCCCCCceeHHHHHHHHHHHh
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-SRVPDWR---AWRCHCYADLNGDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~~~~~~e---l~~l~~~~D~d~dG~I~~~EF~~~l~~l~ 137 (167)
.++++++|..+|+|++|.+ +..+++.+| ..+++++ ++++++.+|.|++|.|+|+||+.++..+.
T Consensus 142 i~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg 209 (644)
T PLN02964 142 PESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFG 209 (644)
T ss_pred HHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhc
Confidence 3679999999999999997 899999999 5888877 79999999999999999999999998754
No 41
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.41 E-value=2.5e-06 Score=59.47 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=56.8
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~ 137 (167)
.......+|..+|+ ++|.|+.++.+.++...+ ++.+.+..+|...|.+++|+++++||+-+|.-+.
T Consensus 8 e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 8 EKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 35668899999985 689999999999998775 7889999999999999999999999988776553
No 42
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.38 E-value=6.3e-07 Score=48.66 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=25.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH-HcC
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFD-SLG 101 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~-~lg 101 (167)
+++.+|+.+|.|++|+|+.+||+.+|+ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999998 565
No 43
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.34 E-value=3.2e-06 Score=71.56 Aligned_cols=57 Identities=26% Similarity=0.295 Sum_probs=49.9
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
......++.+|+.+|.+++|+|+.+||.. ++.+|..+|.|++|.|+++||...+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34467799999999999999999999842 5789999999999999999999988754
No 44
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.32 E-value=4.8e-06 Score=61.06 Aligned_cols=64 Identities=27% Similarity=0.337 Sum_probs=56.0
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHHH----HHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSLG-SRVPDWRA----WRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~~~~~~el----~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
++.-+|+.+|-|++++|...+|...+.++- ..++++|+ ++++.+.|.|+||++++.||-.++.+
T Consensus 109 K~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~r 177 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILR 177 (189)
T ss_pred hhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Confidence 466789999999999999999999999874 57888875 56788999999999999999988764
No 45
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.25 E-value=3.2e-06 Score=71.01 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=70.0
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhccc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDNYH 149 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~~ 149 (167)
+.++..+|+.+|.+.||.|+.+|+...|+.+|.+++++++..+++.+|.++++.|+++||...+...-.....+..+..+
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~p~s~i~di~~~W~ 160 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLYPESDLEDIYDFWR 160 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcCChhHHHHHHHhhh
Confidence 45799999999999999999999999999999999999999999999999999999999988765333222333333333
Q ss_pred ccc-eeeec
Q 042760 150 LNV-FVLFA 157 (167)
Q Consensus 150 ~~~-~~~~~ 157 (167)
-.. +++-+
T Consensus 161 h~~~idigE 169 (463)
T KOG0036|consen 161 HVLLIDIGE 169 (463)
T ss_pred hheEEEccc
Confidence 333 44433
No 46
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.23 E-value=4.2e-06 Score=71.00 Aligned_cols=68 Identities=22% Similarity=0.351 Sum_probs=60.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc----CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSL----GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~l----g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..+..+|+.+|.|++|.||.+||+.+++-+ ...++++++.++-+.+|.|+||.|++.||+..+..+..
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 348899999999999999999999998765 45688999999999999999999999999999876544
No 47
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.22 E-value=5.8e-06 Score=49.95 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=42.1
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 87 RLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 87 ~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
+++..|++.+|+.++..++++.+..+|+.+|.+++|+++.+||...++.+
T Consensus 1 kmsf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999998765
No 48
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.18 E-value=7.7e-06 Score=68.77 Aligned_cols=68 Identities=18% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSR-VPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~-~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
.+++.+|+.||.+++|+++..++...+..+..+ ...+-...+++.+|.|.+|++||+||.+.+..-..
T Consensus 14 ~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~ 82 (463)
T KOG0036|consen 14 IRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKEL 82 (463)
T ss_pred HHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHH
Confidence 458899999999999999999999999999876 66777888999999999999999999998875443
No 49
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.12 E-value=1.1e-05 Score=62.50 Aligned_cols=69 Identities=19% Similarity=0.183 Sum_probs=54.5
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..++...|...|.|+.|.|+.+||+.+|.... ..++.+.++.|+..+|.+.+|+|.++||..+++.+.+
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~ 125 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ 125 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH
Confidence 34677888888888888888888888887543 5677888888888888888888888888888877644
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.97 E-value=1.1e-05 Score=41.64 Aligned_cols=24 Identities=46% Similarity=0.841 Sum_probs=16.3
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDS 96 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~ 96 (167)
|+++|+.+|.|++|.||.+|+..+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 355677777777777777777654
No 51
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=6e-05 Score=53.14 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=51.0
Q ss_pred cchHHHHH-HHhhhhcCCCCCceeHHHHHHHHHHc------CC---C-CCHHHHHH----HHHhcCCCCCCceeHHHHHH
Q 042760 67 SLTQQHLK-SVFLRYDTDGDGRLSNQELKDSFDSL------GS---R-VPDWRAWR----CHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 67 ~~~~e~l~-~~F~~~D~d~~G~Is~~el~~~l~~l------g~---~-~~~~el~~----l~~~~D~d~dG~I~~~EF~~ 131 (167)
.+++++++ ..|.+.|.|++|+|+.-|+..++... |. + +++.|+.. +++.-|.|+||.|+|.||+.
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 45666766 78999999999999999999998754 32 1 33555544 56667889999999999986
Q ss_pred H
Q 042760 132 L 132 (167)
Q Consensus 132 ~ 132 (167)
.
T Consensus 142 ~ 142 (144)
T KOG4065|consen 142 R 142 (144)
T ss_pred h
Confidence 3
No 52
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.78 E-value=6.1e-05 Score=71.61 Aligned_cols=65 Identities=26% Similarity=0.417 Sum_probs=58.1
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCC--HH-----HHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVP--DW-----RAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~--~~-----el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
.++.-+|+.||++.+|.|+..+|+.+|+.+|.+++ ++ ++.+++..+|++.+|.|+..+|+++|-.
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~ 2324 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMIS 2324 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHh
Confidence 45778899999999999999999999999998763 33 7899999999999999999999998854
No 53
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.71 E-value=0.00016 Score=62.65 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=59.0
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSR---VPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~---~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
.++...|...| +++|+++..++..++...+.. ...+++++++...+.|.+|+|+|+||+.++..+...
T Consensus 19 ~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 19 RELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 34778899999 999999999999999987643 357899999999999999999999999987766554
No 54
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.70 E-value=6.3e-05 Score=38.81 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 109 AWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 109 l~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
++.+|+.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999998764
No 55
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.66 E-value=0.00023 Score=43.04 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=35.6
Q ss_pred HHHHHHHHhhccc-chHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 042760 55 WFIDENYAQVKAS-LTQQHLKSVFLRYDTDGDGRLSNQELKDSFDS 99 (167)
Q Consensus 55 ~~~~~~~~~~~~~-~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~ 99 (167)
.|...+ ..+... .+.+++..+|..+|.+++|+|+.+||..++..
T Consensus 9 ~~~~~l-~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 9 EFRRAL-SKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp HHHHHH-HHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred HHHHHH-HHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 344444 444455 78899999999999999999999999999864
No 56
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.65 E-value=4.6e-05 Score=53.85 Aligned_cols=60 Identities=27% Similarity=0.282 Sum_probs=43.9
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
...+.-.|..+|.|+||.|+..|+..+...+ ...+.=+..+++.+|.|+||.|+..|+..
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3457778999999999999999998886645 33344478899999999999999999975
No 57
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.61 E-value=0.0001 Score=39.74 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 108 RAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 108 el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
++..+|+.+|.|++|.|+++||..+++
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 58
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.51 E-value=0.00016 Score=59.20 Aligned_cols=70 Identities=23% Similarity=0.158 Sum_probs=60.6
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
...+.+.+..+|..+|.+++|+|+..|++.++..........++.+-|...|.+.||.|+|+|+...+..
T Consensus 72 ~ee~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~ 141 (325)
T KOG4223|consen 72 PEESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYG 141 (325)
T ss_pred cchhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhh
Confidence 3446778999999999999999999999999988766666777888899999999999999999887653
No 59
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=97.49 E-value=0.00051 Score=52.72 Aligned_cols=67 Identities=22% Similarity=0.415 Sum_probs=56.0
Q ss_pred HHHHhhhhcCCCCCc-eeHHHHHHHHHHcCCCCCHH-HHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 73 LKSVFLRYDTDGDGR-LSNQELKDSFDSLGSRVPDW-RAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 73 l~~~F~~~D~d~~G~-Is~~el~~~l~~lg~~~~~~-el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
..++++.||.+++|. |+..+|..++.....+-+.+ .++-+|+.+|.+++|.|+.+|+..++..+...
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~ 136 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGE 136 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHcc
Confidence 557888888888888 99999999998877655555 78889999999999999999999988877653
No 60
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.25 E-value=0.00028 Score=57.74 Aligned_cols=64 Identities=20% Similarity=0.225 Sum_probs=55.8
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
-.+.|...|+|+||+|+.+|++.++.-.+......|.+-++...|.|.||+++++|.+.-....
T Consensus 243 re~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~F 306 (325)
T KOG4223|consen 243 REQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVF 306 (325)
T ss_pred HHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCccee
Confidence 4577888899999999999999998877777888999999999999999999999987644433
No 61
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.09 E-value=0.00075 Score=34.03 Aligned_cols=25 Identities=40% Similarity=0.761 Sum_probs=13.1
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHH
Q 042760 74 KSVFLRYDTDGDGRLSNQELKDSFD 98 (167)
Q Consensus 74 ~~~F~~~D~d~~G~Is~~el~~~l~ 98 (167)
+.+|+.+|.+++|.|+..+|..+++
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 4455555555555555555555544
No 62
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.02 E-value=0.00085 Score=33.81 Aligned_cols=28 Identities=25% Similarity=0.223 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 108 RAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 108 el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
++..+|+.+|.+++|.|++.+|..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678999999999999999999998864
No 63
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.00 E-value=0.00053 Score=58.32 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=59.0
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHH------cCC----CCC-----HHHHHH--HHHhcCCCCCCceeHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDS------LGS----RVP-----DWRAWR--CHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~------lg~----~~~-----~~el~~--l~~~~D~d~dG~I~~~EF~~ 131 (167)
++..++-+|++||.||||.|+.+||..+.+- +|. .++ .-++.. ...-+-.+++++++++||..
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~ 310 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLK 310 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHH
Confidence 4455888999999999999999999887632 121 011 112222 23345677899999999999
Q ss_pred HHHHHhcchhhhhhhccccc
Q 042760 132 LLNILSNTIICQEIDNYHLN 151 (167)
Q Consensus 132 ~l~~l~~~~~~~~~~~~~~~ 151 (167)
.+..+..+....+...|.+.
T Consensus 311 F~e~Lq~Eil~lEF~~~~~~ 330 (489)
T KOG2643|consen 311 FQENLQEEILELEFERFDKG 330 (489)
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 99999988877777655544
No 64
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.96 E-value=0.00071 Score=42.38 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=28.6
Q ss_pred HHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 109 AWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 109 l~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
+.++|+.+|.|++|.|+.+||..++..+....
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~ 33 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDM 33 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccc
Confidence 67899999999999999999999999886543
No 65
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.93 E-value=0.00099 Score=53.03 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=51.7
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC--CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL-GS--RVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~--~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
+.+.+..+|..-|.+.+|+||..|+++.+..- .. .-+.++-.-.|+..|.|+||.|+|+||..-+...
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlas 169 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLAS 169 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhh
Confidence 34679999999999999999999999887642 11 1122334456888999999999999997655443
No 66
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.80 E-value=0.0086 Score=40.44 Aligned_cols=47 Identities=21% Similarity=0.213 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhcccchH-HHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 54 LWFIDENYAQVKASLTQ-QHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 54 ~~~~~~~~~~~~~~~~~-e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
..++..+...+....+. +++..+++.+|.|++|.|+.+||..++..+
T Consensus 29 ~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 29 SEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35555555434444455 789999999999999999999999988765
No 67
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=96.49 E-value=0.013 Score=50.21 Aligned_cols=69 Identities=20% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCH-------------------------------------------
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSL-GSRVPD------------------------------------------- 106 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~~~~~------------------------------------------- 106 (167)
.++...|+.+|.++.|+|+......++... |.+++=
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 569999999999999999999988887652 222210
Q ss_pred ---HHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 107 ---WRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 107 ---~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
+.++.+|..+|.|++|.|+.+||..++..+...
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh 579 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSH 579 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Confidence 124458889999999999999999999877665
No 68
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.29 E-value=0.031 Score=37.44 Aligned_cols=31 Identities=29% Similarity=0.394 Sum_probs=28.7
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
.+++..+|+.+|.+++|.|+.+||..++..+
T Consensus 50 ~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 50 QKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 7889999999999999999999999988765
No 69
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.25 E-value=0.015 Score=38.20 Aligned_cols=65 Identities=14% Similarity=0.202 Sum_probs=52.7
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc-CC-CCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHHHHh
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSL-GS-RVPDWRAWRCHCYADLN----GDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~-~~~~~el~~l~~~~D~d----~dG~I~~~EF~~~l~~l~ 137 (167)
+|..+|..+-. +.+.||.++|...|..- +. ..+.+++..++..+..+ ..+.+++++|...|..-.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 47889999955 78999999999999764 43 57899999999987544 368999999999886543
No 70
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.23 E-value=0.018 Score=52.35 Aligned_cols=66 Identities=18% Similarity=0.379 Sum_probs=57.1
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
+.-+.+.+|..+|+...|+||...-+.+|...+ ++.-.+-.||...|.|+||+++.+||+-.|-.+
T Consensus 193 ~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhHHHHHhhhcccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 344688999999999999999999999987765 677789999999999999999999997766544
No 71
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.12 E-value=0.021 Score=38.36 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=37.9
Q ss_pred HHHHHHHHHH--hhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 53 WLWFIDENYA--QVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 53 ~~~~~~~~~~--~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
...|...+.. .+....+.+++.++|+.+|.|++|.|+.+||..++..+
T Consensus 31 ~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 31 KKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 3456655543 24556788999999999999999999999999888765
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.08 E-value=0.021 Score=34.47 Aligned_cols=38 Identities=18% Similarity=0.451 Sum_probs=28.6
Q ss_pred hhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 63 QVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 63 ~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
.+.-+...+-...+|+..|++++|.|..+||...++.+
T Consensus 13 ~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 13 MMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp HTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred HHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 44456667778999999999999999999999988764
No 73
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.96 E-value=0.019 Score=38.86 Aligned_cols=49 Identities=8% Similarity=0.024 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHh----hcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 52 NWLWFIDENYAQ----VKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 52 ~~~~~~~~~~~~----~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
....++..+... +....+..++.++++.+|.|++|.|+.+||..++..+
T Consensus 30 s~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 30 SKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred CHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 444555544332 2334467789999999999999999999999998876
No 74
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.83 E-value=0.031 Score=49.34 Aligned_cols=69 Identities=17% Similarity=0.113 Sum_probs=63.4
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchh
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTII 141 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~ 141 (167)
.+.-|..+|.|+.|+++..++..+|+..+..++++.+++++.+.|.+-+|.+...||..+++.+.+...
T Consensus 595 ~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~~ 663 (680)
T KOG0042|consen 595 RKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGCT 663 (680)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCCh
Confidence 557799999999999999999999999998999999999999999998999999999999998877653
No 75
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=0.027 Score=48.97 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=57.5
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
-....|+.+-+|-+|+|+..--+.++... .++-+|+.-||...|.|.||.++..||++.|-.+.-+
T Consensus 232 YYvnQFrtvQpDp~gfisGsaAknFFtKS--klpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVaR 297 (737)
T KOG1955|consen 232 YYVNQFRTVQPDPHGFISGSAAKNFFTKS--KLPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVAR 297 (737)
T ss_pred HHHhhhhcccCCcccccccHHHHhhhhhc--cCchHHHHHHHhhcccCccccccHHHHHhhHhheeec
Confidence 36788999999999999999999888765 5777899999999999999999999999988765433
No 76
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.53 E-value=0.035 Score=37.40 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhh----cccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 53 WLWFIDENYAQV----KASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 53 ~~~~~~~~~~~~----~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
..+|+..+...+ .......++..+++.+|.|++|.|+.+||..++..+
T Consensus 30 ~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 30 KTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 345555444432 234456789999999999999999999999988765
No 77
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.51 E-value=0.053 Score=36.38 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=31.7
Q ss_pred hcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 64 VKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 64 ~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
+....+++++..+++.+|.|++|.|+.+||..++..+
T Consensus 44 lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 44 LEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred hcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3445677889999999999999999999999888754
No 78
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=95.39 E-value=0.0079 Score=51.35 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=38.6
Q ss_pred CceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 86 GRLSNQELKDSFDS-LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 86 G~Is~~el~~~l~~-lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
+.|+..+|+++... .|..+++--++-+|..+|.|+||.++++||+.+|+.=.+.
T Consensus 403 ~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred CCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 44555555555443 3555555556667888999999999999999999876555
No 79
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.35 E-value=0.048 Score=37.02 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=31.4
Q ss_pred hcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 64 VKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 64 ~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
+.....++.+.++|+.+|.|+||.|++.||..++..+
T Consensus 41 l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 41 LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3445567789999999999999999999999988765
No 80
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=95.05 E-value=0.048 Score=46.99 Aligned_cols=78 Identities=17% Similarity=0.157 Sum_probs=56.8
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH----hcCCCCCCceeHHHHHHHHHHHhcchhhhhhhcccc
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHC----YADLNGDGCIRRQSSMSLLNILSNTIICQEIDNYHL 150 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~----~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~~~ 150 (167)
.-|-.+|.|.+|.|+.++|...-. ..++.--++++|. ..-.-.+|+++|++|+-.+-++........ -.|..
T Consensus 282 ~kFweLD~Dhd~lidk~~L~ry~d---~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~S-leYwF 357 (493)
T KOG2562|consen 282 CKFWELDTDHDGLIDKEDLKRYGD---HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPAS-LEYWF 357 (493)
T ss_pred HHHhhhccccccccCHHHHHHHhc---cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccc-hhhhe
Confidence 348889999999999999987643 3445666899998 333456899999999999887665543332 34777
Q ss_pred cceeee
Q 042760 151 NVFVLF 156 (167)
Q Consensus 151 ~~~~~~ 156 (167)
.|.++=
T Consensus 358 rclDld 363 (493)
T KOG2562|consen 358 RCLDLD 363 (493)
T ss_pred eeeecc
Confidence 776653
No 81
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.98 E-value=0.031 Score=37.69 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.1
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCC
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGS 102 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~ 102 (167)
...+.+++..+|+.+|.+++|.|+.+||..++..++.
T Consensus 46 ~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 46 NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 3556788999999999999999999999999887653
No 82
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=94.97 E-value=0.23 Score=36.84 Aligned_cols=66 Identities=9% Similarity=0.119 Sum_probs=50.3
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLG---SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg---~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
..|..|-..+...++...|..+++..+ ..++..+++-+|..+-..+..+|+|++|+..|..+....
T Consensus 6 ~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 6 KAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 344444556677899999999999864 468999999999998766677899999999998776543
No 83
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=94.90 E-value=0.077 Score=35.53 Aligned_cols=34 Identities=21% Similarity=0.337 Sum_probs=30.4
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
..+.+++..+|+.+|.+++|.|+.++|..++..+
T Consensus 48 ~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 48 QKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred CCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4567889999999999999999999999988765
No 84
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.87 E-value=0.044 Score=45.40 Aligned_cols=67 Identities=15% Similarity=0.059 Sum_probs=48.2
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
..+.+-|+-+|+.|+.+-||.++..+|.-+|+... .+..-.+-.+|+.++...+|+|+|++|..++.
T Consensus 292 ~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~l-gv~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 292 PVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVL-GVEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred CCcHHHHHHHHHhcccccccccchHHHHHHHHHhc-CcceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 33455678888888888888888888888877531 23333455678888888888899988877653
No 85
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.84 E-value=0.091 Score=30.88 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=27.8
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHH
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSF 97 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l 97 (167)
.+.+.+.+..+|+.+|.+++|.|+.++|..++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 31 EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 45567789999999999999999999998765
No 86
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.017 Score=48.40 Aligned_cols=83 Identities=17% Similarity=0.137 Sum_probs=66.5
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhc
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVP-DWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDN 147 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~-~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~ 147 (167)
+.+++++.|+.+|+.++|+|+.+-++.+++.++..++ .+.+..+-..+|..+-|.|-.++|+..+.......-....+.
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p~tgs~g~~~f~~ 386 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFPTTGSSGPGAFAG 386 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccccccCccccCCCcceee
Confidence 4578999999999999999999999999999985555 444555566778888888988888887776666556677777
Q ss_pred cccc
Q 042760 148 YHLN 151 (167)
Q Consensus 148 ~~~~ 151 (167)
||+|
T Consensus 387 ~h~n 390 (449)
T KOG2871|consen 387 YHYN 390 (449)
T ss_pred eecc
Confidence 8777
No 87
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=94.51 E-value=0.026 Score=36.35 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=38.9
Q ss_pred chHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-------CCCceeHHHHHH
Q 042760 68 LTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLN-------GDGCIRRQSSMS 131 (167)
Q Consensus 68 ~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d-------~dG~I~~~EF~~ 131 (167)
.+.+++..+|+.+ .++.++|+..+|+..|. .++++-+...+..- ..|..+|..|+.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~-------pe~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT-------PEQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS--------CCCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC-------cHHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 3568899999999 77889999999998853 22234444433221 237799999975
No 88
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=94.48 E-value=0.058 Score=44.47 Aligned_cols=60 Identities=22% Similarity=0.224 Sum_probs=44.4
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHH-c----CCCCCHHHHH-----------HHHHhcCCCCCCceeHHHHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDS-L----GSRVPDWRAW-----------RCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~-l----g~~~~~~el~-----------~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
..|...|.|+||+++..||..++.. + ...-.++++. -+++.+|.|.|.-|+.+||++.-.
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 4678889999999999999988764 2 2211222222 268889999999999999987643
No 89
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.24 E-value=0.074 Score=51.47 Aligned_cols=58 Identities=14% Similarity=0.249 Sum_probs=50.3
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
..|+.+|+||.|.|+..+|..+|..- ...+++|++-++.-...|.+...+|++|+.-+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rf 4118 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRF 4118 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHh
Confidence 35788999999999999999998754 36789999999999888888999999998644
No 90
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=93.92 E-value=0.19 Score=33.09 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=29.4
Q ss_pred chHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 68 LTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 68 ~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
.+.+++..++..+|.+++|.|+.++|..++..+
T Consensus 48 ~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 48 KDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred CCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 357789999999999999999999999988765
No 91
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.81 E-value=0.25 Score=33.26 Aligned_cols=40 Identities=28% Similarity=0.456 Sum_probs=32.9
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-----CCCCCH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL-----GSRVPD 106 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-----g~~~~~ 106 (167)
..+.+++..+|+.+|.+++|.|+.+||..++..+ |..++.
T Consensus 40 ~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 40 GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 3567889999999999999999999999987653 555554
No 92
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=93.60 E-value=0.15 Score=37.78 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=51.3
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 76 VFLRYDTDGDGRLSNQELKDSFDSLGSRVP-DWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 76 ~F~~~D~d~~G~Is~~el~~~l~~lg~~~~-~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
+-..|-.||.|-+|.++|..++.-+....+ +-.+.-.|+.+|-|+|+.|.-.+....+..+.+..
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~e 141 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDE 141 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhcc
Confidence 344555899999999999999887764333 23355678899999999999999999999887764
No 93
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.47 E-value=0.13 Score=31.64 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=28.4
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
+.+++..+|+.+|.+++|.|+.+|+..++..+
T Consensus 31 ~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 31 PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 66789999999999999999999999887653
No 94
>PF14658 EF-hand_9: EF-hand domain
Probab=93.33 E-value=0.46 Score=30.26 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=29.5
Q ss_pred cchHHHHHHHhhhhcCCCC-CceeHHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGD-GRLSNQELKDSFDS 99 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~-G~Is~~el~~~l~~ 99 (167)
..++.+|+.+-..+|+++. |.|+.+.|..+|+.
T Consensus 31 ~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 31 SPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 5567789999999999997 99999999999875
No 95
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=93.24 E-value=0.25 Score=45.04 Aligned_cols=72 Identities=18% Similarity=0.283 Sum_probs=63.9
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
...-+..+|+..|++++|.++..+...+++.+...+....+..++++.+...++++...+|......+....
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp 205 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP 205 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc
Confidence 344588999999999999999999999999999999999999999999888899999999999887766553
No 96
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=92.86 E-value=0.2 Score=34.83 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=30.0
Q ss_pred cccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 042760 65 KASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDS 99 (167)
Q Consensus 65 ~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~ 99 (167)
...++.+.|.+++...|.+++|+|+.+||.-+|.-
T Consensus 37 ~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 37 KSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 35677899999999999999999999999988763
No 97
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=92.74 E-value=0.15 Score=36.15 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=25.9
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHH
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFD 98 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~ 98 (167)
+..+...|..+|.|++|.||.+|+..++.
T Consensus 79 e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 79 EHCIKPFFESCDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHh
Confidence 45578899999999999999999999983
No 98
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=92.66 E-value=0.15 Score=42.63 Aligned_cols=62 Identities=19% Similarity=0.076 Sum_probs=52.1
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
..++.-+|..+|.+.||.|+..||+.+-. .-.+.=+..+|..+|...||.|+-.|+...+..
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k 310 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQK 310 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhcc
Confidence 46799999999999999999999987742 223444788999999999999999999988764
No 99
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=92.60 E-value=0.6 Score=43.53 Aligned_cols=68 Identities=18% Similarity=0.055 Sum_probs=56.6
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHH-----HHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDW-----RAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~-----el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
...+++..|..+|+...|.++.+++..+|..+|.+...+ +...++...|.+..|.++|.+|...|.+-
T Consensus 745 v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 745 VLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 346799999999999999999999999999999877752 34456667777778999999999887754
No 100
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=92.38 E-value=0.46 Score=35.97 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=49.2
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC------------------------------------------------
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRV------------------------------------------------ 104 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~------------------------------------------------ 104 (167)
|++=..-||+|+||.|..-|--..++.+|.++
T Consensus 9 LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD 88 (174)
T PF05042_consen 9 LQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYD 88 (174)
T ss_pred HhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccc
Confidence 44555668999999999999877777766542
Q ss_pred -----CHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 105 -----PDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 105 -----~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
..+..+++|.+++..+.+.+++.|...+++.
T Consensus 89 ~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 89 TEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred cCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 1256788999998887888999999988875
No 101
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=92.14 E-value=0.34 Score=40.32 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=58.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSL-GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
+.++..|..||.+++|.++..|-...+.-+ |...+..-++-.|+.++.+.||.+.-.+|..+++....
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lg 327 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLG 327 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcC
Confidence 458999999999999999999888777765 56777888899999999999999999999888876544
No 102
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=91.00 E-value=1.1 Score=39.34 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcccchHHHHHHHhhh-hcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 55 WFIDENYAQVKASLTQQHLKSVFLR-YDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 55 ~~~~~~~~~~~~~~~~e~l~~~F~~-~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
.|.+....-...+-..+++..+... -|..+||-||.+||+..=.-+. .++.....+|..+|..++|.++|++|..++
T Consensus 57 dFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC--~pDal~~~aFqlFDr~~~~~vs~~~~~~if 134 (694)
T KOG0751|consen 57 DFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC--APDALFEVAFQLFDRLGNGEVSFEDVADIF 134 (694)
T ss_pred HHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc--CchHHHHHHHHHhcccCCCceehHHHHHHH
Confidence 4444433333333333444444433 3566778888888765432222 235555667777888888888888887776
Q ss_pred HHH
Q 042760 134 NIL 136 (167)
Q Consensus 134 ~~l 136 (167)
...
T Consensus 135 ~~t 137 (694)
T KOG0751|consen 135 GQT 137 (694)
T ss_pred hcc
Confidence 543
No 103
>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=90.65 E-value=0.32 Score=41.35 Aligned_cols=68 Identities=21% Similarity=0.200 Sum_probs=49.9
Q ss_pred CCCCCcccccccCCCCCCCcchHHHHHHHHHhHHhhCcccHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCC
Q 042760 13 NTQKNNCHTCRDQRKHAPALDISILVISQTKGIRKNCPRNWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGD 85 (167)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~ 85 (167)
.-+++++|||+...+..+....+..+..+.+++. .++++.+...+......+...++.+|..+|.+.+
T Consensus 286 ta~~~L~HpWi~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (382)
T KOG0032|consen 286 TAAQALQHPWIKSIGEATNIPLDISVLSRSKQFL-----SMSKLKKLALRVLAESLSISGLKEMFKLMDTDNN 353 (382)
T ss_pred CHHHHhcCccccCCcccccccccchhhhhHHHHH-----HHHHHHHHHHHHHhhhhhHHHHHHHHHhhccccc
Confidence 3467899999988777777777777777777777 6666666555555555556778899999998776
No 104
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=90.56 E-value=0.22 Score=41.35 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=49.6
Q ss_pred HHHHhhhhcCCCCCceeHHHHH---HHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 73 LKSVFLRYDTDGDGRLSNQELK---DSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~---~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
+.-.|..+|+|.++.|...|.+ .++..-. -...=...+++.+|.|+|.+|++.|++..+..-.++.
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~~~ 403 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKERG 403 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhhc--cHHHHhhhcchhcccCCCceecHHHHhhhhccccccC
Confidence 4556999999999999999954 4444322 1233356799999999999999999999887654443
No 105
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.10 E-value=1.2 Score=41.05 Aligned_cols=68 Identities=15% Similarity=0.239 Sum_probs=53.1
Q ss_pred hHHHHHHHhhhhc--CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 69 TQQHLKSVFLRYD--TDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 69 ~~e~l~~~F~~~D--~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
+.++-.+-|..|+ +.+.|+|+.+.-+.++-+.| ++..-+-+||...|.|.||+++..||.-.|+.+..
T Consensus 11 T~~Er~K~~~qF~~Lkp~~gfitg~qArnfflqS~--LP~~VLaqIWALsDldkDGrmdi~EfSIAmkLi~l 80 (1118)
T KOG1029|consen 11 TDEERQKHDAQFGQLKPGQGFITGDQARNFFLQSG--LPTPVLAQIWALSDLDKDGRMDIREFSIAMKLIKL 80 (1118)
T ss_pred chHHHHHHHHHHhccCCCCCccchHhhhhhHHhcC--CChHHHHHHHHhhhcCccccchHHHHHHHHHHHHH
Confidence 3445455555665 35789999999999988776 56667899999999999999999999877765543
No 106
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=89.09 E-value=0.43 Score=33.73 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 103 RVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 103 ~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
.+++++++.++.++-.|..|+|.|.||+.-+.
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT-
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcc
Confidence 46899999999999999999999999998765
No 107
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=88.94 E-value=0.92 Score=36.45 Aligned_cols=63 Identities=19% Similarity=0.133 Sum_probs=52.6
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
.++.=..+|.+.+|.++.+||...+.-........++..++..-|.+++.+++.+|.+.---.
T Consensus 283 kkEFeElIDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r~~~ 345 (362)
T KOG4251|consen 283 KKEFEELIDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLERDWL 345 (362)
T ss_pred HHHHHHHhhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHHHhh
Confidence 444455679999999999999999877777778888999999999999999999998764433
No 108
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=87.26 E-value=6.2 Score=26.64 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-------CC----CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSL-------GS----RVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-------g~----~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
.++++.+|+.+ .|.+|.++...|...|+.+ |. ...+.-++.+|...- ..-.|+-++|+..+..
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHh
Confidence 46788999999 7889999999988887653 32 225667788888863 4457999999998763
No 109
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=87.20 E-value=0.78 Score=41.25 Aligned_cols=56 Identities=18% Similarity=0.112 Sum_probs=34.5
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSS 129 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF 129 (167)
+.++|+.+|.+++|.|+..+|...|..+...-..+.+.-+++.+|.+++ ..+.+|-
T Consensus 557 ~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 557 LERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 5666777777777777777777666666544444455566666666655 4544443
No 110
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=83.80 E-value=3.2 Score=36.08 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHhh----hhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 73 LKSVFL----RYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 73 l~~~F~----~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
+.++|. .+-.-.+|.++..+|...+-++-..-+..-++-+|+-+|.+++|.++-.|.--++....+
T Consensus 313 vdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~ 382 (493)
T KOG2562|consen 313 VDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQ 382 (493)
T ss_pred HHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHH
Confidence 666776 344456788888888888777766666666777888888888888888877655554433
No 111
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=83.54 E-value=1.2 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.507 Sum_probs=27.3
Q ss_pred chHHHH---HHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 68 LTQQHL---KSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 68 ~~~e~l---~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
.+.+++ ..+|..+|.|++|.|+.+||..++...
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 344553 688999999999999999999998753
No 112
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=83.47 E-value=1.5 Score=34.12 Aligned_cols=30 Identities=20% Similarity=0.106 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHHHh
Q 042760 108 RAWRCHCYADLNGDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 108 el~~l~~~~D~d~dG~I~~~EF~~~l~~l~ 137 (167)
++..+|+.+|.+.||.|++.|...+|..+.
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg 129 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLG 129 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhC
Confidence 456799999999999999999999998763
No 113
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=82.61 E-value=0.54 Score=44.01 Aligned_cols=68 Identities=21% Similarity=0.350 Sum_probs=58.1
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
...+.++|...|.+.+|.|+..+.+..+... .++...+..+|...|..+.|.+++.+|...+-.+...
T Consensus 282 ~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~--gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~~~ 349 (847)
T KOG0998|consen 282 KQKYSKIFSQVDKDNDGSISSNEARNIFLPF--GLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLEQK 349 (847)
T ss_pred HHHHHHHHHhccccCCCcccccccccccccC--CCChhhhhhhhhhcchhccCcccccccchhhhhhhhh
Confidence 3457789999999999999999999998874 4677789999999999999999999998776655544
No 114
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=81.49 E-value=2 Score=38.49 Aligned_cols=60 Identities=28% Similarity=0.340 Sum_probs=42.6
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCC-CHH-HHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRV-PDW-RAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~-~~~-el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
-+...|..||.|+||.++..|+..++...+... +.. +.+.. -.+..|.++|.-|+..+.-
T Consensus 316 Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t----~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 316 FLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST----VKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred HHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc----eecccceeehhhHHHHHHH
Confidence 488999999999999999999999999875332 100 00000 1125789999999876653
No 115
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=77.13 E-value=12 Score=23.86 Aligned_cols=49 Identities=20% Similarity=0.109 Sum_probs=31.3
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHH
Q 042760 88 LSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNIL 136 (167)
Q Consensus 88 Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l 136 (167)
++.+++..+++..|..++.+++..+++.-+..+--.++-+.+...+..+
T Consensus 14 l~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 14 LKDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred CChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHHHH
Confidence 4456677777777778888888888877554443345555555555444
No 116
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=75.91 E-value=11 Score=33.34 Aligned_cols=62 Identities=11% Similarity=0.021 Sum_probs=46.3
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCC-ceeHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDG-CIRRQSSM 130 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG-~I~~~EF~ 130 (167)
..|.-+++|+..|+.++|.||.=+++.++-.....+....++..+-..-...++ +++|..|.
T Consensus 177 ~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 177 QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 456688999999999999999999999998876666666777766655433333 56666663
No 117
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=70.86 E-value=21 Score=25.02 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=44.1
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 74 KSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 74 ~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
..+|-.++..++-..+..+++.+|...|.....+.++.++..+. |+ +.+|.+.
T Consensus 4 vaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 4 VAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 45667778888889999999999999999999999999999875 33 5667654
No 118
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=70.10 E-value=4.7 Score=25.92 Aligned_cols=51 Identities=10% Similarity=-0.022 Sum_probs=32.9
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 87 RLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 87 ~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
.+++.-|..+|. ..++.+.++.+...++.=..++|+-+||+..++.+..+.
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 345444444444 345666666666666555567888888888888776654
No 119
>PLN02228 Phosphoinositide phospholipase C
Probab=67.51 E-value=25 Score=31.70 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=50.7
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCCC----CCCceeHHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-S-RVPDWRAWRCHCYADLN----GDGCIRRQSSMSLLNI 135 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~-~~~~~el~~l~~~~D~d----~dG~I~~~EF~~~l~~ 135 (167)
..+..++..+|..+-. ++.++.++|...|.... . ..+.+.+..++..+... ..|.++.+.|..+|..
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcC
Confidence 4467889999999864 36899999999998763 2 35566788888877543 2467999999998864
No 120
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=67.27 E-value=27 Score=23.34 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=41.7
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 87 RLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 87 ~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
.||..||...-++.+.+++.++.+.++..+-.+.=.-.+-++=..++..+...+
T Consensus 14 ~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT 67 (85)
T PF11116_consen 14 NITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKIT 67 (85)
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 588899999999999999999998888877655444566667777777776654
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=66.10 E-value=36 Score=25.85 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=42.4
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCC-------CCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSR-------VPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~-------~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
-.+.++++|.++++.+.+.||..|+..+++.-... -+.-|-.-++..+ .+.+|.+.-+.-..++
T Consensus 94 vp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~vY 164 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGVY 164 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhhc
Confidence 45679999999999999999999999999863211 1111222223222 4567888877655443
No 122
>PLN02222 phosphoinositide phospholipase C 2
Probab=65.49 E-value=24 Score=31.91 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=50.4
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcCC-CCCCceeHHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-S-RVPDWRAWRCHCYADL-NGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~-~~~~~el~~l~~~~D~-d~dG~I~~~EF~~~l~~ 135 (167)
.....++..+|..+-. ++.++.++|...|.... . ..+.+.+..++..+.. ...+.++++.|..+|..
T Consensus 21 ~~~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 21 SEAPREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CCCcHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 3355689999999864 47999999999998753 2 3567778888887532 23567999999998864
No 123
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=63.78 E-value=19 Score=22.28 Aligned_cols=47 Identities=19% Similarity=0.140 Sum_probs=34.2
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh
Q 042760 86 GRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 86 G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~ 137 (167)
-.+|.+||...+..++..++..++--+|..+-. +.-..|..+...+.
T Consensus 8 ~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~~-----~er~k~~~M~~~L~ 54 (61)
T TIGR01639 8 KKLSKEELNELINSLDEIPNRNDMLIIWNQVHG-----IERDKFVDMQENLK 54 (61)
T ss_pred HHccHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-----HHHHhHHHHHHHHH
Confidence 457888999999999988898888888887642 44445666655443
No 124
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.73 E-value=8.4 Score=34.08 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=30.4
Q ss_pred ccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHH
Q 042760 66 ASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDS 99 (167)
Q Consensus 66 ~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~ 99 (167)
..++.++|..+++.-|.|+||.|+..||..++.-
T Consensus 260 Sklpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 260 SKLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred ccCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3567789999999999999999999999998764
No 125
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.48 E-value=36 Score=30.86 Aligned_cols=68 Identities=13% Similarity=0.020 Sum_probs=48.7
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-C--CCCHHHHHHHHHhcC-------CCCCCceeHHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-S--RVPDWRAWRCHCYAD-------LNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~--~~~~~el~~l~~~~D-------~d~dG~I~~~EF~~~l~~ 135 (167)
..+..+++.+|..+-.++ +.++.++|...|..-. . ..+.+++..++..+- .-..+.++.+.|..++..
T Consensus 25 ~~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 25 SGPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 346688999999996444 8999999999998754 2 345666667665431 112456999999997754
No 126
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=61.26 E-value=11 Score=25.36 Aligned_cols=51 Identities=16% Similarity=-0.013 Sum_probs=29.0
Q ss_pred CCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 85 DGRLSNQELKDSFDSLG--SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg--~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
||.++..|...+-.-+. ..++.++...++..+........++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 57777776544433221 2456666666666655544445667777666554
No 127
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=61.20 E-value=3.8 Score=31.93 Aligned_cols=57 Identities=25% Similarity=0.165 Sum_probs=41.4
Q ss_pred HhhhhcC-CCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 76 VFLRYDT-DGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 76 ~F~~~D~-d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
.|-.+|. .-||++|..||.-+-.-+ .+.+.=+...|..+|.|+||.|+.+|+...+-
T Consensus 192 qf~qld~~p~d~~~sh~el~pl~ap~--ipme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 192 QFGQLDQHPIDGYLSHTELAPLRAPL--IPMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeccccCCCccccccccccccccCCc--ccHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 4666776 459999999986543222 12233467899999999999999999977653
No 128
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=61.07 E-value=11 Score=26.35 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=19.3
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKD 95 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~ 95 (167)
-++..|+..|.|+||.||..|...
T Consensus 89 C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 89 CARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHcc
Confidence 488899999999999999999764
No 129
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=59.71 E-value=17 Score=33.00 Aligned_cols=70 Identities=17% Similarity=0.098 Sum_probs=48.0
Q ss_pred eeHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcchhhhhhhcccccceeeecCCCc
Q 042760 88 LSNQELKDSFDSLGS-RVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTIICQEIDNYHLNVFVLFAEPGF 161 (167)
Q Consensus 88 Is~~el~~~l~~lg~-~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (167)
|+...+..+++.+-. ..+..-+.++|...|.+.+|.|+|.+|+..+..+........+ .-+|.+...||+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~----~l~y~lh~~p~~ 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKL----KLLYKLHDPPAD 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHH----HHHHhhccCCcc
Confidence 444555555555431 2334456889999999999999999999999887765544433 345667777766
No 130
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=58.02 E-value=28 Score=35.19 Aligned_cols=57 Identities=14% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCceeHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSL--GSRVPDWRAWRCHCYADLNGDGCIRRQSS 129 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~l--g~~~~~~el~~l~~~~D~d~dG~I~~~EF 129 (167)
++++.....||+.+|+|+..+....|-.- -...+.++++..|+.+|. +..+|+-++.
T Consensus 2297 ~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a-~~~yvtke~~ 2355 (2399)
T KOG0040|consen 2297 EFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA-GKPYVTKEEL 2355 (2399)
T ss_pred hHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc-CCccccHHHH
Confidence 79999999999999999999998887542 234566799999999987 5567776665
No 131
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.27 E-value=15 Score=31.56 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=42.9
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
..++|-.+-+ -+|+||...-+..|- +..++.+-+-++|+..|.|.||.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~mv--~sklpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEMV--KSKLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHHH--hccCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 5556665544 468888776666554 3467888899999999999999999999953
No 132
>PLN02952 phosphoinositide phospholipase C
Probab=55.20 E-value=35 Score=30.95 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=30.3
Q ss_pred CCceeHHHHHHHHHHcC--CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 85 DGRLSNQELKDSFDSLG--SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg--~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
.|.++..++....+.+. ...+..|+..+|..+-.+ .+.++.++|...+.....
T Consensus 14 ~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 14 SGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred CCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 46666666665555443 122455666666666432 245666666666665444
No 133
>PLN02952 phosphoinositide phospholipase C
Probab=54.86 E-value=57 Score=29.64 Aligned_cols=65 Identities=14% Similarity=0.111 Sum_probs=47.1
Q ss_pred hHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcC-C-CCCHHHHHHHHHhcC-------CCCCCceeHHHHHHHHH
Q 042760 69 TQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLG-S-RVPDWRAWRCHCYAD-------LNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg-~-~~~~~el~~l~~~~D-------~d~dG~I~~~EF~~~l~ 134 (167)
+..++..+|..+-.++ +.++.++|...|.... . ..+.+++..++..+- ..+.+.++++.|...+.
T Consensus 36 ~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 36 PPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLL 109 (599)
T ss_pred ChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHc
Confidence 5789999999996544 7899999999998753 2 466677777655431 11234589999998875
No 134
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=54.39 E-value=25 Score=22.17 Aligned_cols=32 Identities=3% Similarity=0.084 Sum_probs=27.3
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHCYA 116 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~ 116 (167)
+=-|+.+-++..+.++|..+++..+.++++..
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34588899999999999999999999988764
No 135
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=53.44 E-value=72 Score=21.98 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc----CCCCCCceeHHHHHHHHHHHhc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYA----DLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~----D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
.++++-|..+-. +|+|+.+.|..++ |..-+.+-..++|..+ ... ...|+.+|+...+..+.+
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 457777888776 8999999999887 5555565566666543 222 457999999988877765
No 136
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.88 E-value=9.7 Score=35.87 Aligned_cols=67 Identities=25% Similarity=0.406 Sum_probs=56.8
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
......|+.+|..++|.|+..+-...+...| +....+-++|...|..+.|..+..+|...++.+...
T Consensus 11 ~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlva~a 77 (847)
T KOG0998|consen 11 PLFDQYFKSADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLVAQA 77 (847)
T ss_pred chHHHhhhccCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHhhhh
Confidence 4577899999999999999999888887655 677778889999999999999999998877766443
No 137
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=51.87 E-value=60 Score=20.62 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHHHHHhHHhhCcc---cHHHHHHHHHHhhcccchHHHHHHHhhhhcCCCCCcee--HHHHHHHHHHcCCCCCHH
Q 042760 37 LVISQTKGIRKNCPR---NWLWFIDENYAQVKASLTQQHLKSVFLRYDTDGDGRLS--NQELKDSFDSLGSRVPDW 107 (167)
Q Consensus 37 ~v~~~~k~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~l~~~F~~~D~d~~G~Is--~~el~~~l~~lg~~~~~~ 107 (167)
....+..++....+. +|..|..........+.....++.-+..+-+ +++.+. ..+|..++..++..++++
T Consensus 10 ~A~~w~~~~~~~~~~~~~~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv~~y~~rf~~l~~~~~~~~~e~ 84 (96)
T PF03732_consen 10 PARQWYRNLRPNEIRDFITWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESVREYVNRFRELARRAPPPMDEE 84 (96)
T ss_pred HHHHHHHHhHhcCCCCCCCHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcHHHHHHHHHHHHHHCCCCcCHH
Confidence 344445555444444 6777777666655554444455555555544 444443 234444444444334443
No 138
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=50.15 E-value=35 Score=28.48 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=22.9
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSL 132 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~ 132 (167)
.|.||++|-...++......+.+.++.+++.++ |+-+||-.+
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg------~t~~ef~~~ 341 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG------ISEEEFWKT 341 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC------CCHHHHHHH
Confidence 455666665555555444444555566666554 445555444
No 139
>PRK00523 hypothetical protein; Provisional
Probab=49.66 E-value=32 Score=22.25 Aligned_cols=32 Identities=3% Similarity=0.137 Sum_probs=27.7
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHCYA 116 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~ 116 (167)
+=-|+.+-++..+.++|..+++..+.++++..
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 34588889999999999999999999988876
No 140
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=49.55 E-value=62 Score=23.59 Aligned_cols=36 Identities=8% Similarity=0.016 Sum_probs=24.4
Q ss_pred CCCceeHHHHHHHHHH-cCCCCCHHHHHHHHHhcCCC
Q 042760 84 GDGRLSNQELKDSFDS-LGSRVPDWRAWRCHCYADLN 119 (167)
Q Consensus 84 ~~G~Is~~el~~~l~~-lg~~~~~~el~~l~~~~D~d 119 (167)
..+.|+.+.|+..|+. +...++++-...+|..+-..
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~~~ 81 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQKK 81 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS---
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 3458999999999997 46678888889999887544
No 141
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=48.63 E-value=36 Score=23.74 Aligned_cols=62 Identities=10% Similarity=0.141 Sum_probs=35.0
Q ss_pred hhhcCCCCCceeHHHHHHHHHH----------cCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhcch
Q 042760 78 LRYDTDGDGRLSNQELKDSFDS----------LGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSNTI 140 (167)
Q Consensus 78 ~~~D~d~~G~Is~~el~~~l~~----------lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~~ 140 (167)
+.+|...+-+|+.+++..++.. .|..++..-+-+++-+-...+...++-+ |+.-+-+...+.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~~-~L~qlIr~yg~~ 81 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLSTD-FLTQIIRFYGGS 81 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCHH-HHHHHHHHhChh
Confidence 3567777788888888877764 2445555556666655544444444433 433333333333
No 142
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=48.19 E-value=86 Score=22.02 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=41.1
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
.++-.+-..++..+|.+++..+|...|..+....+..+++.+.. .+.+|.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34445555677789999999999999999999999999998852 56777765
No 143
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=47.12 E-value=33 Score=21.94 Aligned_cols=31 Identities=3% Similarity=-0.148 Sum_probs=23.2
Q ss_pred HHHHHHHhcCCCCCCceeHHHHHHHHHHHhcc
Q 042760 108 RAWRCHCYADLNGDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 108 el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~~ 139 (167)
||..+|..+-. +.+.|+.++|...|....+.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 57788888854 67889999999888765554
No 144
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=47.08 E-value=52 Score=18.90 Aligned_cols=29 Identities=31% Similarity=0.642 Sum_probs=21.4
Q ss_pred HHHHHHhhhhc-CCC-CCceeHHHHHHHHHH
Q 042760 71 QHLKSVFLRYD-TDG-DGRLSNQELKDSFDS 99 (167)
Q Consensus 71 e~l~~~F~~~D-~d~-~G~Is~~el~~~l~~ 99 (167)
..+..+|..|- ++| ...|+..||+.+|..
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45677888885 333 568999999998875
No 145
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=46.92 E-value=25 Score=18.85 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=15.2
Q ss_pred CCceeHHHHHHHHHHHhcc
Q 042760 121 DGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 121 dG~I~~~EF~~~l~~l~~~ 139 (167)
.|.|+++|++.++.++...
T Consensus 2 ~~~i~~~~~~d~a~rv~~f 20 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNF 20 (33)
T ss_pred CceecHHHHHHHHHHHHHH
Confidence 5789999999988877553
No 146
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=46.44 E-value=29 Score=16.82 Aligned_cols=13 Identities=31% Similarity=0.496 Sum_probs=5.8
Q ss_pred CCCCCceeHHHHH
Q 042760 118 LNGDGCIRRQSSM 130 (167)
Q Consensus 118 ~d~dG~I~~~EF~ 130 (167)
.|+||.|+=-++.
T Consensus 2 vN~DG~vna~D~~ 14 (21)
T PF00404_consen 2 VNGDGKVNAIDLA 14 (21)
T ss_dssp TTSSSSSSHHHHH
T ss_pred CCCCCcCCHHHHH
Confidence 3444444444443
No 147
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.18 E-value=37 Score=21.82 Aligned_cols=33 Identities=3% Similarity=0.068 Sum_probs=28.3
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHCYAD 117 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D 117 (167)
+=-|+.+-++..+.+.|..+++..+.++++..-
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 345889999999999999999999999988653
No 148
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=45.26 E-value=44 Score=25.45 Aligned_cols=38 Identities=21% Similarity=0.109 Sum_probs=25.3
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 042760 81 DTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADL 118 (167)
Q Consensus 81 D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~ 118 (167)
..|.+|+++.++|...+..-+..++.+++.++...-++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 46889999999999999887777899999999887543
No 149
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=44.44 E-value=27 Score=21.85 Aligned_cols=37 Identities=16% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCC
Q 042760 84 GDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNG 120 (167)
Q Consensus 84 ~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~ 120 (167)
.++-++...+...|..-|..++++.+...++.++.+|
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3467888888888888888888888999888887654
No 150
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=44.31 E-value=1.1e+02 Score=21.68 Aligned_cols=66 Identities=18% Similarity=0.065 Sum_probs=42.6
Q ss_pred hHHHHHHHhhhhcCCC--CCceeHHHHHHHHHHcC-------CCCCH-----------HHHHHHHHhcCCCCCCceeHHH
Q 042760 69 TQQHLKSVFLRYDTDG--DGRLSNQELKDSFDSLG-------SRVPD-----------WRAWRCHCYADLNGDGCIRRQS 128 (167)
Q Consensus 69 ~~e~l~~~F~~~D~d~--~G~Is~~el~~~l~~lg-------~~~~~-----------~el~~l~~~~D~d~dG~I~~~E 128 (167)
+...+.++|+.+..+. +..|+..++..+|..+- ....+ --+..++..+|.+++|+|+.-+
T Consensus 39 ~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls 118 (127)
T PF09068_consen 39 DLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLS 118 (127)
T ss_dssp -HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHH
T ss_pred eHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhH
Confidence 4456788888887643 57899999999988753 11111 1145688899999999999999
Q ss_pred HHHHHH
Q 042760 129 SMSLLN 134 (167)
Q Consensus 129 F~~~l~ 134 (167)
|...+.
T Consensus 119 ~KvaL~ 124 (127)
T PF09068_consen 119 FKVALI 124 (127)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876654
No 151
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=43.67 E-value=38 Score=23.17 Aligned_cols=54 Identities=11% Similarity=0.102 Sum_probs=38.1
Q ss_pred hhcccchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc-CCCCCHHHHHHHHHhc
Q 042760 63 QVKASLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL-GSRVPDWRAWRCHCYA 116 (167)
Q Consensus 63 ~~~~~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l-g~~~~~~el~~l~~~~ 116 (167)
-+...++.+++.++-..+-.++....+..++...+... +...+.+++.++-..+
T Consensus 31 LL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~L 85 (96)
T PF11829_consen 31 LLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRARL 85 (96)
T ss_dssp HHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHHH
T ss_pred HhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHHH
Confidence 34566888898888888877777777888888888876 4566788888876654
No 152
>PRK01844 hypothetical protein; Provisional
Probab=42.33 E-value=47 Score=21.48 Aligned_cols=31 Identities=13% Similarity=0.083 Sum_probs=27.3
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 042760 86 GRLSNQELKDSFDSLGSRVPDWRAWRCHCYA 116 (167)
Q Consensus 86 G~Is~~el~~~l~~lg~~~~~~el~~l~~~~ 116 (167)
=-|+.+-++..+.+.|..+++..+.++++..
T Consensus 37 Ppine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3588899999999999999999999988876
No 153
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=42.15 E-value=62 Score=24.61 Aligned_cols=44 Identities=14% Similarity=0.031 Sum_probs=33.7
Q ss_pred cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHH
Q 042760 81 DTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQ 127 (167)
Q Consensus 81 D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~ 127 (167)
-.|.+|+++.++|...++.-+..++.+++.++...-| .++..+.
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~---K~Rf~l~ 70 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD---KGRFEIS 70 (179)
T ss_pred ccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC---CcceEec
Confidence 3578999999999999986666789999998887644 3444443
No 154
>KOG3077 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.01 E-value=1.7e+02 Score=23.79 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=50.9
Q ss_pred cchHHHHHHHhhhh-cCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHhc
Q 042760 67 SLTQQHLKSVFLRY-DTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILSN 138 (167)
Q Consensus 67 ~~~~e~l~~~F~~~-D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~~ 138 (167)
..++..+.+.|..+ |++.+-.|..+.+...+..+|..+.+-.+--+--.+....-|..+.+||+.-+..+.-
T Consensus 60 ~~s~~~l~~~f~~y~d~~d~~~i~~dgi~~fc~dlg~~p~~i~~LvlAwkl~A~~m~~Fsr~ef~~g~~~l~~ 132 (260)
T KOG3077|consen 60 RVSEKRLEELFNQYKDPDDDNLIGPDGIEKFCEDLGVEPEDISVLVLAWKLGAATMCEFSREEFLKGMTALGC 132 (260)
T ss_pred cccHHHHHHHHHHhcCcccccccChHHHHHHHHHhCCCchhHHHHHHHHHhccchhhhhhHHHHHHHHHHcCC
Confidence 34455577777666 7766688999999999999997666544444444556666788999999886665533
No 155
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=41.87 E-value=23 Score=29.99 Aligned_cols=63 Identities=11% Similarity=0.014 Sum_probs=46.4
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLG---SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg---~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
..|+.+|+.+=.+.++......+..+-..+. .++-..++-.||..+|.|.||.++-.|...+.
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ 276 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIE 276 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhh
Confidence 4588999999777766665555554433332 23446789999999999999999999986653
No 156
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=40.15 E-value=29 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.019 Sum_probs=20.2
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADL 118 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~ 118 (167)
.|+||.+++..+|... .++.+.++.++..+..
T Consensus 19 ~G~lT~~eI~~~L~~~--~~~~e~id~i~~~L~~ 50 (82)
T PF03979_consen 19 KGYLTYDEINDALPED--DLDPEQIDEIYDTLED 50 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHHT
T ss_pred cCcCCHHHHHHHcCcc--CCCHHHHHHHHHHHHH
Confidence 5889999998888743 3677788888877653
No 157
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=40.12 E-value=47 Score=30.07 Aligned_cols=68 Identities=19% Similarity=0.200 Sum_probs=46.6
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHH-HcCCCCCHHHHHHHHHhcCC---C--CCCceeHHHHHHHHHHHhcc
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFD-SLGSRVPDWRAWRCHCYADL---N--GDGCIRRQSSMSLLNILSNT 139 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~-~lg~~~~~~el~~l~~~~D~---d--~dG~I~~~EF~~~l~~l~~~ 139 (167)
-+.++|+.-|.|+||.++-.|+...=+ .++.++...++..+-...+. + .++.++..-|+-+-....++
T Consensus 196 al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfier 269 (625)
T KOG1707|consen 196 ALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIER 269 (625)
T ss_pred HHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHHh
Confidence 388899999999999999999877643 35777887776665444332 2 13456667787665544433
No 158
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=39.81 E-value=1.1e+02 Score=20.36 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=34.9
Q ss_pred CceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHH
Q 042760 86 GRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLL 133 (167)
Q Consensus 86 G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l 133 (167)
-.+.-.+|+..|.......+..+...+-..+|...++.||-=||-...
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFt 68 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFT 68 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHH
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHH
Confidence 568889999999887554555566777788899999999988885543
No 159
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=39.79 E-value=1.1e+02 Score=29.31 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=53.7
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHc----------CCCCCHHHHHHHHHhcCCCC----CCceeHHHHHHHHHH
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSL----------GSRVPDWRAWRCHCYADLNG----DGCIRRQSSMSLLNI 135 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~l----------g~~~~~~el~~l~~~~D~d~----dG~I~~~EF~~~l~~ 135 (167)
.++.++|..+--+..-+++.++|..+|..- ........+..++..+..++ .|.++-+-|+..+..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 468999999988888999999999999752 34567788999999887664 689999999987764
No 160
>PLN02223 phosphoinositide phospholipase C
Probab=39.39 E-value=1e+02 Score=27.63 Aligned_cols=68 Identities=10% Similarity=-0.070 Sum_probs=48.7
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHH---HHc-C-CCCCHHHHHHHHHhcCCC--------CCCceeHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSF---DSL-G-SRVPDWRAWRCHCYADLN--------GDGCIRRQSSMSLL 133 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l---~~l-g-~~~~~~el~~l~~~~D~d--------~dG~I~~~EF~~~l 133 (167)
..+.++++.+|..+- +++|..+.+.|.+.| ... | ...+.++.+.++..+-.. ..+.++.+.|...+
T Consensus 12 ~~~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 12 ANQPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CCCcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 446788999999994 678999999999988 332 3 356677777776654221 12569999999887
Q ss_pred HH
Q 042760 134 NI 135 (167)
Q Consensus 134 ~~ 135 (167)
..
T Consensus 91 ~s 92 (537)
T PLN02223 91 FS 92 (537)
T ss_pred cC
Confidence 54
No 161
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=37.10 E-value=1.4e+02 Score=27.85 Aligned_cols=67 Identities=13% Similarity=0.203 Sum_probs=50.1
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHHHh
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNILS 137 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~l~ 137 (167)
......++..|+..|..++|.+...++......+...+ ++..+|..+-.+ .+.++.++++..+....
T Consensus 168 ~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q 234 (746)
T KOG0169|consen 168 QLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQ 234 (746)
T ss_pred hhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHhc
Confidence 33445688888888889999999999999988876544 677777776433 67788887777776653
No 162
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=35.84 E-value=78 Score=18.21 Aligned_cols=37 Identities=11% Similarity=0.029 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 91 QELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 91 ~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
+|...+|..+| ++..++..+++.+.. ...++.++.+.
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik 40 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIK 40 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHH
Confidence 56777888887 577788888887754 23356666554
No 163
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=34.66 E-value=1.2e+02 Score=21.19 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=42.5
Q ss_pred HHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
.++-++-..++..+|.+++..+|+..|..+....+..+++.+.. .+.+|.+.--.
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~ 59 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhH
Confidence 34445556677789999999999999999999999988888752 56777766433
No 164
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.77 E-value=35 Score=24.40 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.0
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHH
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDS 96 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~ 96 (167)
+..+.+--|.|+||+|+..||...
T Consensus 119 iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 119 IDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HHHHhcccccCCCceeeHHHHHhh
Confidence 445667778899999999998754
No 165
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=31.81 E-value=78 Score=22.04 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 042760 90 NQELKDSFDSLGSRVPDWRAWRCHCY 115 (167)
Q Consensus 90 ~~el~~~l~~lg~~~~~~el~~l~~~ 115 (167)
.+|++.++..+...++++++++++..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 55666666666555666666665554
No 166
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=31.23 E-value=98 Score=19.53 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=19.1
Q ss_pred hhhcCCCCCceeHHHHHHHHHH
Q 042760 78 LRYDTDGDGRLSNQELKDSFDS 99 (167)
Q Consensus 78 ~~~D~d~~G~Is~~el~~~l~~ 99 (167)
+.+|...+.+|+.+++.++++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4688999999999999999875
No 167
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=31.07 E-value=74 Score=22.68 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=21.0
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
+--+...||++++|.|+.-+++.+|..+
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHHHh
Confidence 5567889999999999999999888654
No 168
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=30.17 E-value=19 Score=19.77 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.2
Q ss_pred cccccccCCCCCCCCcccccc
Q 042760 3 LHIHDEVAPNNTQKNNCHTCR 23 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (167)
..|.||++|....++-|..|.
T Consensus 12 y~i~d~~ip~~g~~v~C~~C~ 32 (36)
T PF13717_consen 12 YEIDDEKIPPKGRKVRCSKCG 32 (36)
T ss_pred EeCCHHHCCCCCcEEECCCCC
Confidence 468999999999999998885
No 169
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=28.20 E-value=1.3e+02 Score=17.35 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh
Q 042760 71 QHLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCY 115 (167)
Q Consensus 71 e~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~ 115 (167)
..|+..|.. +.+.+..++..+...+| ++..+|...|..
T Consensus 13 ~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF~n 50 (59)
T cd00086 13 EELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHHHH
Confidence 446777776 56888999888888886 677788877764
No 170
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=27.88 E-value=87 Score=19.35 Aligned_cols=26 Identities=4% Similarity=0.178 Sum_probs=19.3
Q ss_pred ceeHHHHHHHHHHcCCCCCHHHHHHH
Q 042760 87 RLSNQELKDSFDSLGSRVPDWRAWRC 112 (167)
Q Consensus 87 ~Is~~el~~~l~~lg~~~~~~el~~l 112 (167)
.|+.++|..+|+.....++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 37788888888888878888777653
No 171
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=27.81 E-value=21 Score=23.90 Aligned_cols=12 Identities=33% Similarity=0.648 Sum_probs=5.2
Q ss_pred CCceeHHHHHHH
Q 042760 85 DGRLSNQELKDS 96 (167)
Q Consensus 85 ~G~Is~~el~~~ 96 (167)
||.++.+|...+
T Consensus 16 DG~v~~~E~~~i 27 (111)
T cd07176 16 DGDIDDAELQAI 27 (111)
T ss_pred ccCCCHHHHHHH
Confidence 344444444333
No 172
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=27.34 E-value=25 Score=24.69 Aligned_cols=48 Identities=17% Similarity=0.022 Sum_probs=21.5
Q ss_pred CCceeHHHHHHHHHHc--CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHH
Q 042760 85 DGRLSNQELKDSFDSL--GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSL 132 (167)
Q Consensus 85 ~G~Is~~el~~~l~~l--g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~ 132 (167)
||.++.+|...+...+ ...++..+...++..++.-....+++.+|+..
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 86 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRE 86 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 5666666655554433 12334444455544444333334555555443
No 173
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=27.21 E-value=1.3e+02 Score=17.36 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042760 72 HLKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHC 114 (167)
Q Consensus 72 ~l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~ 114 (167)
.|...|.. +.+++.++...+...+| ++...|...|.
T Consensus 14 ~L~~~f~~-----~~~p~~~~~~~la~~l~--l~~~~V~~WF~ 49 (57)
T PF00046_consen 14 VLEEYFQE-----NPYPSKEEREELAKELG--LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHH-----SSSCHHHHHHHHHHHHT--SSHHHHHHHHH
T ss_pred HHHHHHHH-----hcccccccccccccccc--ccccccccCHH
Confidence 35555552 67888888888888775 67777777665
No 174
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.89 E-value=1.1e+02 Score=27.95 Aligned_cols=67 Identities=24% Similarity=0.280 Sum_probs=50.4
Q ss_pred cchHHHHHHHhhhhcCCCCCceeHHHHHHHHHHc---C-----CCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 67 SLTQQHLKSVFLRYDTDGDGRLSNQELKDSFDSL---G-----SRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 67 ~~~~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l---g-----~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
...+..++-.|.+.|. .+|.++.+++..++..+ + ...+.+....++...|.+..|.+.++++..++.
T Consensus 14 ~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ll~ 88 (646)
T KOG0039|consen 14 CSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKGYITNEDLEILLL 88 (646)
T ss_pred CChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccceeeecchhHHHH
Confidence 3446679999999998 99999999999887753 1 223344556688888888888888887766555
No 175
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=26.51 E-value=69 Score=20.53 Aligned_cols=16 Identities=19% Similarity=0.576 Sum_probs=10.6
Q ss_pred CCCceeHHHHHHHHHH
Q 042760 84 GDGRLSNQELKDSFDS 99 (167)
Q Consensus 84 ~~G~Is~~el~~~l~~ 99 (167)
..|++..+|+..++..
T Consensus 27 ~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 27 ASGKLRGEEINSLLEA 42 (75)
T ss_pred HcCcccHHHHHHHHHH
Confidence 3577777777776644
No 176
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=26.48 E-value=1.9e+02 Score=18.95 Aligned_cols=12 Identities=0% Similarity=-0.130 Sum_probs=6.2
Q ss_pred eeHHHHHHHHHH
Q 042760 124 IRRQSSMSLLNI 135 (167)
Q Consensus 124 I~~~EF~~~l~~ 135 (167)
.++.+|...+..
T Consensus 53 ~~~~~~~~~l~~ 64 (106)
T cd07316 53 FGLEEYARQFRR 64 (106)
T ss_pred CCHHHHHHHHHH
Confidence 445555555443
No 177
>PHA02105 hypothetical protein
Probab=25.53 E-value=1.7e+02 Score=18.15 Aligned_cols=48 Identities=6% Similarity=-0.108 Sum_probs=28.8
Q ss_pred ceeHHHHHHHHHHc---CCCCCHHHHHHHHHhcCCCC--CCceeHHHHHHHHH
Q 042760 87 RLSNQELKDSFDSL---GSRVPDWRAWRCHCYADLNG--DGCIRRQSSMSLLN 134 (167)
Q Consensus 87 ~Is~~el~~~l~~l---g~~~~~~el~~l~~~~D~d~--dG~I~~~EF~~~l~ 134 (167)
+++++|+..++..- ..++..+.++++-..+.... =-.++|+||-.+|-
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p 56 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMP 56 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhccccc
Confidence 46677777776643 23455555566555444432 23689999977664
No 178
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=25.34 E-value=87 Score=26.47 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhcCCCCCceeHHHHHHHHHHc
Q 042760 70 QQHLKSVFLRYDTDGDGRLSNQELKDSFDSL 100 (167)
Q Consensus 70 ~e~l~~~F~~~D~d~~G~Is~~el~~~l~~l 100 (167)
..-.+++|+..|.|+|-.||.+|++..|...
T Consensus 369 rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 369 RKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred HHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 4457889999999999999999999888643
No 179
>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=24.43 E-value=46 Score=27.29 Aligned_cols=42 Identities=7% Similarity=-0.128 Sum_probs=22.5
Q ss_pred CCcccccccCCCCCCCcchHHHHHHHHHhHHhhCcccHHHHHHHHHH
Q 042760 16 KNNCHTCRDQRKHAPALDISILVISQTKGIRKNCPRNWLWFIDENYA 62 (167)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~l~~~v~~~~k~~~~~~~~~~~~~~~~~~~ 62 (167)
.+++|||+.+..+-...---..++..++.|. ...+++..++.
T Consensus 263 EAL~HpWi~~r~~~As~~H~~dtvd~lrkfN-----arRKLKgavLt 304 (355)
T KOG0033|consen 263 EALKHPWICNRERVASAIHRQDTVDCLKKFN-----ARRKLKGAILT 304 (355)
T ss_pred HHhCCchhcchHHHHHHhhhHHHHHHHHHhh-----HHHHHHHHHHH
Confidence 5789999976554332222233455566665 44445544443
No 180
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.42 E-value=1.1e+02 Score=21.51 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=21.3
Q ss_pred eHHHHHHHHHHcCCCCCHHHHHHHHHhcC
Q 042760 89 SNQELKDSFDSLGSRVPDWRAWRCHCYAD 117 (167)
Q Consensus 89 s~~el~~~l~~lg~~~~~~el~~l~~~~D 117 (167)
|.+|++.++..-+..+++++++.++...+
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildiv~ 109 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDIVD 109 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHHHH
Confidence 46778888887777778888877766543
No 181
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=23.79 E-value=1.2e+02 Score=19.04 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=22.1
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHc----CCCCCHHHHHHHHHhc
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSL----GSRVPDWRAWRCHCYA 116 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~l----g~~~~~~el~~l~~~~ 116 (167)
+..+...++....--+-..+|+.++..+ |...+++-++.+|+.|
T Consensus 25 l~~a~~~l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 25 LEDALEALENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 3444444443333334455666666654 5666666677777654
No 182
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=23.14 E-value=1.1e+02 Score=18.24 Aligned_cols=30 Identities=20% Similarity=0.179 Sum_probs=22.5
Q ss_pred CCceeHHHHHHHHHHcCCCCCHHHHHHHHH
Q 042760 85 DGRLSNQELKDSFDSLGSRVPDWRAWRCHC 114 (167)
Q Consensus 85 ~G~Is~~el~~~l~~lg~~~~~~el~~l~~ 114 (167)
+|.|+.+||..-+...-..-+..++..++.
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 689999999887776655666777776664
No 183
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.54 E-value=1.5e+02 Score=21.79 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=40.1
Q ss_pred HHhhhhcCCCCCceeHHHH---HHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 75 SVFLRYDTDGDGRLSNQEL---KDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 75 ~~F~~~D~d~~G~Is~~el---~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
-+|++... ||.++..|. +.+++. ...++.++++.++.....-+...|+|..|-..++
T Consensus 34 Llf~Vm~A--DG~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~ 93 (148)
T COG4103 34 LLFHVMEA--DGTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLK 93 (148)
T ss_pred HHHHHHhc--ccCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777765 566776664 444443 3467888898888877666667898898877766
No 184
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=21.98 E-value=2.2e+02 Score=25.45 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=41.9
Q ss_pred HhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHh---cCC----C-CCCceeHHHHHHHHH
Q 042760 76 VFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCY---ADL----N-GDGCIRRQSSMSLLN 134 (167)
Q Consensus 76 ~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~---~D~----d-~dG~I~~~EF~~~l~ 134 (167)
+|..|-....+.++.--|..+|+++|..-++..+..++.. +|. + ..+.++-+-|..++.
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~ 157 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIF 157 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhc
Confidence 4666766667999999999999999988777666665543 342 2 234678777766554
No 185
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=21.96 E-value=1.7e+02 Score=16.82 Aligned_cols=31 Identities=19% Similarity=0.111 Sum_probs=19.1
Q ss_pred CCcee-HHHHHHHHHHcCCCCCHHHHHHHHHh
Q 042760 85 DGRLS-NQELKDSFDSLGSRVPDWRAWRCHCY 115 (167)
Q Consensus 85 ~G~Is-~~el~~~l~~lg~~~~~~el~~l~~~ 115 (167)
.|.|+ ..++...|...|..++++.++.+++.
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 46665 33444445556777777777777654
No 186
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.78 E-value=1.6e+02 Score=25.16 Aligned_cols=14 Identities=0% Similarity=0.024 Sum_probs=7.3
Q ss_pred ceeHHHHHHHHHHH
Q 042760 123 CIRRQSSMSLLNIL 136 (167)
Q Consensus 123 ~I~~~EF~~~l~~l 136 (167)
++-|.||+..|..+
T Consensus 42 RL~FNeFi~tma~I 55 (379)
T PF11593_consen 42 RLQFNEFIQTMANI 55 (379)
T ss_pred HHHHHHHHHHHHHh
Confidence 44555555555544
No 187
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=21.70 E-value=1.7e+02 Score=23.51 Aligned_cols=48 Identities=8% Similarity=0.083 Sum_probs=24.2
Q ss_pred CCCceeHHHHHHHHHHcC--CCCCHHH---HHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 84 GDGRLSNQELKDSFDSLG--SRVPDWR---AWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 84 ~~G~Is~~el~~~l~~lg--~~~~~~e---l~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
-||.++..|+. ..+.+. ..++.++ +.++|+.- .....++++|+..+..
T Consensus 68 ADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 68 AKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRS 120 (267)
T ss_pred cCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHH
Confidence 36777777765 333321 2344554 44444433 2233666666665544
No 188
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=21.28 E-value=1.9e+02 Score=18.59 Aligned_cols=42 Identities=21% Similarity=0.143 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCC-CCCceeHHHHHHHH
Q 042760 90 NQELKDSFDSLGSRVPDWRAWRCHCYADLN-GDGCIRRQSSMSLL 133 (167)
Q Consensus 90 ~~el~~~l~~lg~~~~~~el~~l~~~~D~d-~dG~I~~~EF~~~l 133 (167)
..+|...|. |.+.+.+.+.+.+..++.. --|.++-+||+.++
T Consensus 44 i~~le~~L~--G~~~~~~~i~~~l~~~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEALI--GCPYDREAIKEALNSVDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHHT--TCBSSHHHHHHHHHHCHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHHH--hcCCCHHHHHHHHHHhCHhhccccCCHHHHHHhC
Confidence 556666653 6677777888888777543 23467777777654
No 189
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=21.17 E-value=3e+02 Score=19.26 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=35.4
Q ss_pred CCCCCceeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHH
Q 042760 82 TDGDGRLSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMS 131 (167)
Q Consensus 82 ~d~~G~Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~ 131 (167)
..++-.+|.+++..+|...|..+....+..+++.+.. .+.+|.+.
T Consensus 12 l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 12 LGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred hcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 4566679999999999999999998888888888742 45666664
No 190
>PLN03225 Serine/threonine-protein kinase SNT7; Provisional
Probab=20.49 E-value=1.1e+02 Score=27.25 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=37.1
Q ss_pred HHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHHHHH--HHHhcCCCCCCceeHHHHHHH
Q 042760 74 KSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWRAWR--CHCYADLNGDGCIRRQSSMSL 132 (167)
Q Consensus 74 ~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~el~~--l~~~~D~d~dG~I~~~EF~~~ 132 (167)
......-..+.+|..+..+++.+...- .....+..+ +....+.+..|..++.+++.-
T Consensus 487 ~~~~~~~~~~~~~~~~e~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (566)
T PLN03225 487 VFLMAKSGTEKEGGFTEAQLQELREKE--PKKKGSAQRNALASALRLQRKGVKTVARTVDE 545 (566)
T ss_pred HHHHHhcCCCCCCCccHHHHHHhhhhc--CcchhhhhhhhHHHHHhhhhhhhhhhhhhhhc
Confidence 333444456678889999988876543 222333333 677777888888888888763
No 191
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=20.15 E-value=82 Score=29.11 Aligned_cols=64 Identities=27% Similarity=0.267 Sum_probs=47.2
Q ss_pred HHHHhhhhcCCCCCceeHHHHHHHHHHcCCCCCHHH---------HHHHHHhcCCCCC----------------------
Q 042760 73 LKSVFLRYDTDGDGRLSNQELKDSFDSLGSRVPDWR---------AWRCHCYADLNGD---------------------- 121 (167)
Q Consensus 73 l~~~F~~~D~d~~G~Is~~el~~~l~~lg~~~~~~e---------l~~l~~~~D~d~d---------------------- 121 (167)
-..+|..+|-+-++.++..++......++..+...+ -..++..+|.+++
T Consensus 439 ~~~~~s~~d~~~~fk~sf~~~~~l~~~F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~~s 518 (975)
T KOG2419|consen 439 AKRILSIVDYEEDFKLSFSEFSDLSFAFGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLKKS 518 (975)
T ss_pred hhhcccccccccCceEeeehHHHHHHHHHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccccc
Confidence 456788889999999998888777666553322222 2457777888888
Q ss_pred -CceeHHHHHHHHHHH
Q 042760 122 -GCIRRQSSMSLLNIL 136 (167)
Q Consensus 122 -G~I~~~EF~~~l~~l 136 (167)
|.|+.+|.+.++...
T Consensus 519 ~~~vtVDe~v~ll~~~ 534 (975)
T KOG2419|consen 519 FGVVTVDELVALLALD 534 (975)
T ss_pred cCeeEHHHHHHHHHHH
Confidence 999999999888743
No 192
>PHA03041 virion core protein; Provisional
Probab=20.13 E-value=1.9e+02 Score=21.36 Aligned_cols=31 Identities=29% Similarity=0.483 Sum_probs=22.4
Q ss_pred cccccccCCCCCCCCcccccccCCCCCCCcch
Q 042760 3 LHIHDEVAPNNTQKNNCHTCRDQRKHAPALDI 34 (167)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 34 (167)
|+|--.|||+.+.+ +|.+|.+.....+...+
T Consensus 60 LkI~~~vip~~~~~-~~~~~s~~~~~~~~~~~ 90 (153)
T PHA03041 60 LKIKNIVIPAKSNK-NNPQCSDVKSNDVPKKI 90 (153)
T ss_pred hhheeeeccCCccc-cCccccccccccchhhh
Confidence 67888999999986 78888776544444433
No 193
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=20.03 E-value=1.1e+02 Score=25.79 Aligned_cols=47 Identities=23% Similarity=0.360 Sum_probs=32.5
Q ss_pred eHHHHHHHHHHc-CCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHHH
Q 042760 89 SNQELKDSFDSL-GSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLNI 135 (167)
Q Consensus 89 s~~el~~~l~~l-g~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~~ 135 (167)
|.+.|+.++..+ |.....-+-..+|...|.|+||.++-.|.-+++..
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchheeeeccCCcccccHHHHHHHHHH
Confidence 456677776654 33333333455777889999999999988877764
No 194
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=20.02 E-value=3.1e+02 Score=18.89 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=34.9
Q ss_pred eeHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCCCCceeHHHHHHHHH
Q 042760 88 LSNQELKDSFDSLGSRVPDWRAWRCHCYADLNGDGCIRRQSSMSLLN 134 (167)
Q Consensus 88 Is~~el~~~l~~lg~~~~~~el~~l~~~~D~d~dG~I~~~EF~~~l~ 134 (167)
+|.+++..+|...|..++.+.+..+++.+. ..+.+|.+.-..
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLa-----Gk~V~eli~~g~ 58 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALN-----GKNIDEVISKGK 58 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHc-----CCCHHHHHHHHH
Confidence 999999999999999999999999998874 256777776443
Done!