BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042761
(383 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0AAD5|TYRP_SHIFL Tyrosine-specific transport protein OS=Shigella flexneri GN=tyrP
PE=3 SV=1
Length = 403
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 30/315 (9%)
Query: 38 KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSL 97
K G+V ++ GT+IG+G+LA+P A+ G + + LI W + AL+L+E+ +
Sbjct: 2 KNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV 61
Query: 98 RRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL--- 154
G T+A+ LG +G L +FL Y AY S +GE+L
Sbjct: 62 PADTGLG------------TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASS 109
Query: 155 ---YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL-TASMIGLLVAIEVIAVVV 210
+ +++ + LFT V ++ +G T D FN++L +A +I L+V + ++ +
Sbjct: 110 ISDWTGISMSATAGVLLFTFVAGGVVCVG-TSLVDLFNRFLFSAKIIFLVVMLVLLLPHI 168
Query: 211 GGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270
+ L G + IPVI S +H P + +Y+ G++ +LR ++GS IPL++
Sbjct: 169 HKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVA 228
Query: 271 LLVWDAISL---------GLSAQADQVIDPVELLMRVRWS-GVSVMVEAFSLMAVGTSLI 320
+ W +L GL A + ++ L + S V + V F+ +A+ TS +
Sbjct: 229 YIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFL 288
Query: 321 GTLLGFSEFFKEQLK 335
G LG ++ + +
Sbjct: 289 GVALGLFDYLADLFQ 303
>sp|P0AAD4|TYRP_ECOLI Tyrosine-specific transport protein OS=Escherichia coli (strain
K12) GN=tyrP PE=1 SV=1
Length = 403
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/315 (26%), Positives = 150/315 (47%), Gaps = 30/315 (9%)
Query: 38 KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSL 97
K G+V ++ GT+IG+G+LA+P A+ G + + LI W + AL+L+E+ +
Sbjct: 2 KNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV 61
Query: 98 RRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL--- 154
G T+A+ LG +G L +FL Y AY S +GE+L
Sbjct: 62 PADTGLG------------TLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASS 109
Query: 155 ---YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL-TASMIGLLVAIEVIAVVV 210
+ +++ + LFT V ++ +G T D FN++L +A +I L+V + ++ +
Sbjct: 110 ISDWTGISMSATAGVLLFTFVAGGVVCVG-TSLVDLFNRFLFSAKIIFLVVMLVLLLPHI 168
Query: 211 GGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270
+ L G + IPVI S +H P + +Y+ G++ +LR ++GS IPL++
Sbjct: 169 HKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVFIIGSAIPLVA 228
Query: 271 LLVWDAISL---------GLSAQADQVIDPVELLMRVRWS-GVSVMVEAFSLMAVGTSLI 320
+ W +L GL A + ++ L + S V + V F+ +A+ TS +
Sbjct: 229 YIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVHLFADLALATSFL 288
Query: 321 GTLLGFSEFFKEQLK 335
G LG ++ + +
Sbjct: 289 GVALGLFDYLADLFQ 303
>sp|P44727|TYRPA_HAEIN Tyrosine-specific transport protein 1 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-A
PE=3 SV=1
Length = 400
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 31/320 (9%)
Query: 43 GAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKR 102
G+ L+ GT IG+G+LA+P ++ G + + L+ W L AL+ +E+ +
Sbjct: 6 GSTLLVAGTMIGAGMLAMPLTSAGIGFGFTLVLLLGLWALLTFSALLFVEL-------YQ 58
Query: 103 KGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPE 162
E + I T+A++ G G +AT + Y + AY S G +L LL PE
Sbjct: 59 TAESDA-----GIGTLAEQYFGKTGRIIATAVLIIFLYALIAAYISGGGSLLKDLL--PE 111
Query: 163 S----VSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDG 218
S VS LFT +F I IG T + D+ N+ L M+ + + + + L
Sbjct: 112 SFGDKVSVLLFTVIFGSFIVIG-THSVDKINRVLFFVMLAAFAVVLSLMLPEIKFDNLMA 170
Query: 219 SG-NWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAI 277
+ + + + PV + +H P L YL G++ LR S+L+GS I L + ++W
Sbjct: 171 TPIDKALIISASPVFFTAFGFHGSIPSLNKYLDGNVKALRFSILVGSAITLCAYILWQLS 230
Query: 278 SLGLSAQAD--QVIDP-------VELLMRVRWSGV-SVMVEAFSLMAVGTSLIGTLLGFS 327
+ GL Q + Q++ V+ + S V + V+ FS +A+ TS +G LG
Sbjct: 231 THGLLTQNEFLQILKEDATLNGLVKATFAITGSNVIASAVKLFSTLALITSFLGVGLGLL 290
Query: 328 EFFKEQLKSLSWNSSPTKTS 347
E ++ LK S+N + + S
Sbjct: 291 ECIEDLLKR-SFNVTAGRIS 309
>sp|P44614|MTR_HAEIN Tryptophan-specific transport protein OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mtr PE=3
SV=1
Length = 418
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 73/332 (21%), Positives = 137/332 (41%), Gaps = 48/332 (14%)
Query: 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEIN 94
Q+ ++ G +I GT+IG+G+LA P + S L+LI W + L+++E N
Sbjct: 3 QQKSPSLLGGAMIIAGTAIGAGMLANPTSTAGVWFIGSILALIYTWFCMTTSGLMILEAN 62
Query: 95 VSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL 154
+ G S T+ ++ LG T+ + F+ Y AY + G I
Sbjct: 63 LHYPTGS------------SFDTIVKDLLGKSWNTINGLSVAFVLYILTYAYITSGGGIT 110
Query: 155 YHLLN-----------IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMI------ 197
+LLN I + +F + + + T+A D+F L M+
Sbjct: 111 QNLLNQAFSSAESAVDIGRTSGSLIFCLILAAFVWL-STKAVDRFTTVLIVGMVVAFFLS 169
Query: 198 --GLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255
GLL +++ AV+ + + + + +PV + S +H P L Y D R
Sbjct: 170 TTGLLSSVKT-AVLFNTVAESEQT-YLPYLLTALPVCLVSFGFHGNVPSLVKYYDRDGRR 227
Query: 256 LRASVLLGSLIPLLSLLVWD------------AISLGLSAQADQVIDPVELLMRVRWSGV 303
+ S+ +G+ + L+ ++W A + +++ + + V + +
Sbjct: 228 VMKSIFIGTGLALVIYILWQLAVQGNLPRTEFAPVIEKGGDVSALLEALHKYIEVEY--L 285
Query: 304 SVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLK 335
SV + F+ MA+ TS +G LG ++ + K
Sbjct: 286 SVALNFFAYMAISTSFLGVTLGLFDYIADLFK 317
>sp|Q8XB33|TNAB_ECO57 Low affinity tryptophan permease OS=Escherichia coli O157:H7
GN=tnaB PE=3 SV=1
Length = 415
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 72/322 (22%), Positives = 130/322 (40%), Gaps = 34/322 (10%)
Query: 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINV 95
++K + V +I GT IG G+ ALP + A F + LI+ W +L L+L+E N+
Sbjct: 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANL 65
Query: 96 SLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL- 154
+ G S T+ ++ +G+ ++ + F+ Y AY S +G I+
Sbjct: 66 NYPVGS------------SFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIIS 113
Query: 155 --------YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMI---GLLVAI 203
YH + +F + S+ +R T F S + G +
Sbjct: 114 ETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKIISFVIVFGSFFFL 173
Query: 204 EVIAVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263
+++ S G+ + + +PV + S +H P L G +L SV+ G
Sbjct: 174 VDYSILRDATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFG 233
Query: 264 SLIPLLSLLVWDAISLG---------LSAQADQVIDPVELLMRVRWSG-VSVMVEAFSLM 313
SL+ L+ L W ++G + + V V+ + + G + + FS +
Sbjct: 234 SLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNL 293
Query: 314 AVGTSLIGTLLGFSEFFKEQLK 335
AV +S G LG ++ + K
Sbjct: 294 AVASSFFGVTLGLFDYLADLFK 315
>sp|P23173|TNAB_ECOLI Low affinity tryptophan permease OS=Escherichia coli (strain K12)
GN=tnaB PE=1 SV=1
Length = 415
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 131/325 (40%), Gaps = 40/325 (12%)
Query: 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINV 95
++K + V +I GT IG G+ ALP + A F + LI+ W +L L+L+E N+
Sbjct: 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANL 65
Query: 96 SLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL- 154
+ G S T+ ++ +G+ ++ + F+ Y AY S +G I+
Sbjct: 66 NYPVGS------------SFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIIS 113
Query: 155 --------YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVI 206
YH + +F L S+ +R T F L +I ++
Sbjct: 114 ETISMNLGYHANPRIVGICTAIFVASVLWLSSLAASRITSLF---LGLKIISFVIVFGSF 170
Query: 207 ------AVVVGGWSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASV 260
+++ S G+ + + +PV + S +H P L G +L SV
Sbjct: 171 FFQVDYSILRDATSSTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSV 230
Query: 261 LLGSLIPLLSLLVWDAISLG---------LSAQADQVIDPVELLMRVRWSG-VSVMVEAF 310
+ GSL+ L+ L W ++G + + V V+ + + G + + F
Sbjct: 231 VFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVF 290
Query: 311 SLMAVGTSLIGTLLGFSEFFKEQLK 335
S +AV +S G LG ++ + K
Sbjct: 291 SNLAVASSFFGVTLGLFDYLADLFK 315
>sp|P44747|TYRPB_HAEIN Tyrosine-specific transport protein 2 OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tyrP-B
PE=3 SV=1
Length = 406
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 79/318 (24%), Positives = 147/318 (46%), Gaps = 35/318 (11%)
Query: 38 KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSL 97
K G+ +I GT+IG+G+LA+P ++ G + L L+ W L+ L+ +E+
Sbjct: 3 KNKTFGSALIIAGTTIGAGMLAMPLTSAGMGFGYTLLLLVGLWALLVYSGLLFVEV---- 58
Query: 98 RRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEIL--- 154
+ ++ ++ + T+A++ G G AT+ + L Y AY + G +L
Sbjct: 59 ---YQTADQLDD----GVATLAEKYFGVPGRIFATLSLLVLLYALSAAYITGGGSLLSGL 111
Query: 155 ---YHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVG 211
+ + + + +FT V + +G T+ D + L IG L+A + ++
Sbjct: 112 PTAFGMEAMSLKTAIIIFTVVLGSFVVVG-TKGVDGLTRVL---FIGKLIAFAFVLFMML 167
Query: 212 GWSGLDG----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIP 267
D ++ V + P+ + S +H + + +YLGG + + R ++L+G+ IP
Sbjct: 168 PKVATDNLMALPLDYAFVVSAAPIFLTSFGFHVIMASVNSYLGGSVDKFRRAILIGTAIP 227
Query: 268 LLSLLVWDAISLGLSAQADQV----IDPV--ELLMRVR-WSGVSVM---VEAFSLMAVGT 317
L + LVW + G+ +Q++ V DP L+ R +G M V FS +A+ T
Sbjct: 228 LAAYLVWQLATHGVLSQSEFVRILQADPTLNGLVNATREITGSHFMGEVVRVFSSLALIT 287
Query: 318 SLIGTLLGFSEFFKEQLK 335
S +G +LG E + K
Sbjct: 288 SFLGVMLGVFEGLGDLFK 305
>sp|P0AAD3|MTR_SHIFL Tryptophan-specific transport protein OS=Shigella flexneri GN=mtr
PE=3 SV=1
Length = 414
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 123/310 (39%), Gaps = 61/310 (19%)
Query: 57 ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116
+ +LP S A F S +LI W +L L+++E N++ R G S
Sbjct: 29 MFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGS------------SFD 76
Query: 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL-----LNIPESVSGFLFTT 171
T+ ++ LG + + F+ Y AY S SG IL+H LN+P +GF
Sbjct: 77 TITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGF---- 132
Query: 172 VFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVG---GWSGLDGS--------- 219
F LL++ F WL+ + + AI + A V+ + L G
Sbjct: 133 GFALLVA---------FVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNV 183
Query: 220 --GNWGKVP---ATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVW 274
N P T+P + S YH P L Y G D + ++ G+L+ L +W
Sbjct: 184 AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243
Query: 275 DAISLG------------LSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGT 322
++G D ++ + ++ R + +++ FS AV +S +G
Sbjct: 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSR--SLDLLLVVFSNFAVASSFLGV 301
Query: 323 LLGFSEFFKE 332
LG ++ +
Sbjct: 302 TLGLFDYLAD 311
>sp|P0AAD2|MTR_ECOLI Tryptophan-specific transport protein OS=Escherichia coli (strain
K12) GN=mtr PE=1 SV=1
Length = 414
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/310 (23%), Positives = 123/310 (39%), Gaps = 61/310 (19%)
Query: 57 ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116
+ +LP S A F S +LI W +L L+++E N++ R G S
Sbjct: 29 MFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGS------------SFD 76
Query: 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL-----LNIPESVSGFLFTT 171
T+ ++ LG + + F+ Y AY S SG IL+H LN+P +GF
Sbjct: 77 TITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGF---- 132
Query: 172 VFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVG---GWSGLDGS--------- 219
F LL++ F WL+ + + AI + A V+ + L G
Sbjct: 133 GFALLVA---------FVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNV 183
Query: 220 --GNWGKVP---ATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVW 274
N P T+P + S YH P L Y G D + ++ G+L+ L +W
Sbjct: 184 AESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIW 243
Query: 275 DAISLG------------LSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGT 322
++G D ++ + ++ R + +++ FS AV +S +G
Sbjct: 244 LLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSR--SLDLLLVVFSNFAVASSFLGV 301
Query: 323 LLGFSEFFKE 332
LG ++ +
Sbjct: 302 TLGLFDYLAD 311
>sp|P28785|TNAB_PROVU Low affinity tryptophan permease OS=Proteus vulgaris GN=tnaB PE=2
SV=1
Length = 417
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 70/330 (21%), Positives = 128/330 (38%), Gaps = 39/330 (11%)
Query: 30 ETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALI 89
E ++E I G L G IG+G+ +LP S A S L + F+ +
Sbjct: 2 ENTSVNKEPSIIVGGFVLG-GAMIGAGMFSLPTIMSGAWFINSLFILFIVCFFMFHSGIY 60
Query: 90 LIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSK 149
++E + G N F++ ++E L W +A +F+ Y + AY S
Sbjct: 61 ILECI------SKYGAGTNYFDI------SKELLPKWACYIANASLIFVLYILIYAYISA 108
Query: 150 SGEILY-----HLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIE 204
+G I+Y + +N F+FT I GG A+ + +L ++ ++A
Sbjct: 109 AGSIIYEASLLYGINFNLRAIFFIFTIALGATIWWGGACASRLTSIFLFIKIVLFILAFS 168
Query: 205 VIAVVVGG-------WSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLR 257
+ G ++G + + IP I S YH L + ++
Sbjct: 169 GLFFKAKGDLLFSATFAGKSQLYLYPFIFIIIPYAITSFGYHGNVCSLYKLYNQNERKVV 228
Query: 258 ASVLLGSLIPLLSLLVWDAISLG------------LSAQADQVIDPVELLMRVRWSGVSV 305
S ++G L+ L+ L+W ++G D ID + ++ ++ +
Sbjct: 229 KSCIIGCLLALVIYLLWMIGTMGNLPREQFITIIQKGGNLDAFIDSLYTVLNSKY--IEG 286
Query: 306 MVEAFSLMAVGTSLIGTLLGFSEFFKEQLK 335
+ FS+ AV S +G +G ++ LK
Sbjct: 287 FLLWFSISAVFCSFLGVAIGLFDYILASLK 316
>sp|Q47825|TUTB_ENTAG Tyrosine permease OS=Enterobacter agglomerans GN=tutB PE=3 SV=1
Length = 416
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/343 (22%), Positives = 134/343 (39%), Gaps = 72/343 (20%)
Query: 47 LIIGTSIGSGILALPQKASPAGI-FP-SSLSLIVCWGFLLIEALILIEINVSLRRGKRKG 104
LII T IG G+ +LP + AGI FP +S+ L + +L+ L+L+E+N+ G
Sbjct: 16 LIIATVIGGGMFSLP--IAMAGIWFPGASIILTLIAIMMLLTGLMLVEVNLHYGGGA--- 70
Query: 105 EEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESV 164
S T Q+ LG + + + F+ Y AY S S ++ + E
Sbjct: 71 ---------SFNTFTQDLLGHKWNVVVGIAFGFVLYILTYAYISGSSAVISQTV---EKY 118
Query: 165 SGFLFTTVFTLLIS---IGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDG--- 218
SGF +++I +GG W ++ ++G + + +I V ++ G
Sbjct: 119 SGFYLPARLSVIIVSVLVGGI-------AWYSSLLVGRITTVLIIGKFVAFFATFSGLIW 171
Query: 219 ---------SGNWG--------KVPATIPVIIFSLVYHDLAPVLCAYLGGD-LPRLRASV 260
S W + T+P I S +H P L G + + S+
Sbjct: 172 HVEGAKLIDSAAWALPDTQYLPYILMTLPFCIISYGFHGNVPSLVKLYGTQGVKNITRSI 231
Query: 261 LLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEA----------- 309
+G+ LL + W +++G ++AD P+ + + V VEA
Sbjct: 232 FIGTAFALLLYIFWLVVTMGNISRAD--FSPII----AKGGNIDVFVEAIGGLFTSTSMD 285
Query: 310 -----FSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTS 347
F AV +SL+ LG ++ + S KT+
Sbjct: 286 LILTFFGNFAVASSLLAATLGLFDYIADLFHFSDDRSGRFKTA 328
>sp|P0AAD6|SDAC_ECOLI Serine transporter OS=Escherichia coli (strain K12) GN=sdaC PE=1
SV=1
Length = 429
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 50 GTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109
GT+IG+G+L LP A G+ P + I+ + L +S GK GE+ E
Sbjct: 31 GTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLS---GKNPGEDITE 87
Query: 110 FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146
+ +E G G L T+ Y F Y ++ Y
Sbjct: 88 --------VVEEHFGIGAGKLITLLYFFAIYPILLVY 116
>sp|P0AAD7|SDAC_ECO57 Serine transporter OS=Escherichia coli O157:H7 GN=sdaC PE=3 SV=1
Length = 429
Score = 35.8 bits (81), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 50 GTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109
GT+IG+G+L LP A G+ P + I+ + L +S GK GE+ E
Sbjct: 31 GTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLS---GKNPGEDITE 87
Query: 110 FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146
+ +E G G L T+ Y F Y ++ Y
Sbjct: 88 --------VVEEHFGIGAGKLITLLYFFAIYPILLVY 116
>sp|Q83QD0|SDAC_SHIFL Serine transporter OS=Shigella flexneri GN=sdaC PE=3 SV=1
Length = 429
Score = 35.8 bits (81), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 11/97 (11%)
Query: 50 GTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109
GT+IG+G+L LP A G+ P + I+ + L +S GK GE+ E
Sbjct: 31 GTAIGAGVLFLPINAGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLS---GKNPGEDITE 87
Query: 110 FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146
+ +E G G L T+ Y F Y ++ Y
Sbjct: 88 --------VVEEHFGIGAGKLITLLYFFAIYPILLVY 116
>sp|P39570|GERBB_BACSU Spore germination protein B2 OS=Bacillus subtilis (strain 168)
GN=gerBB PE=2 SV=2
Length = 368
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 17/144 (11%)
Query: 32 IKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILI 91
++ + K T + +I T IG+G+L LP+ A+ G PS W +L++ +I I
Sbjct: 1 MRKSEHKLTFMQTLIMISSTLIGAGVLTLPRSAAETGS-PSG------WLMILLQGVIFI 53
Query: 92 EINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKS- 150
I + +K + F++ SI G + G L + Y+ L + ++ + ++
Sbjct: 54 IIVLLFLPFLQKNSGKTLFKLNSIVA------GKFIGFLLNL-YICLYFIGIVCFQARIL 106
Query: 151 GEI--LYHLLNIPESVSGFLFTTV 172
GE+ + L N P +V F+F V
Sbjct: 107 GEVVGFFLLKNTPMAVVVFIFLAV 130
>sp|Q3USY0|S38AB_MOUSE Putative sodium-coupled neutral amino acid transporter 11 OS=Mus
musculus GN=Slc38a11 PE=2 SV=2
Length = 453
Score = 35.0 bits (79), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 23/138 (16%)
Query: 27 LEEETIKNDQE----------KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSL 76
L+ ET +D+E K + + AV ++ + IGSGI+ LP AG FP + L
Sbjct: 12 LQRETDSSDRESLISGHEHGGKSSQSAAVFNVVNSVIGSGIIGLPYSMKQAG-FPLGILL 70
Query: 77 IVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYV 136
+ ++ +L+L+ ++ G G + S +++ +T G G L +
Sbjct: 71 LFLVSYITDFSLVLL-----IKGGALSGTD-------SYQSLVNKTFGFPGYLLLSTLQF 118
Query: 137 FLGYTSMIAYCSKSGEIL 154
+ +MI+Y +G+ L
Sbjct: 119 MYPFIAMISYNIITGDTL 136
>sp|Q68FL6|SYMC_MOUSE Methionine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Mars PE=2
SV=1
Length = 902
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 45/106 (42%), Gaps = 10/106 (9%)
Query: 167 FLFTTVFTLLISIGGTRATDQFNQWLT--ASMIGLLVAIEVIAVVVGGWSGLDGSGNWGK 224
F + + + G D NQWL A+ + +++ + +VV G G D G +
Sbjct: 60 FSASAICRYFFLLCGWEQDDLTNQWLEWEATELQPVLSAALHCLVVQGKKGEDILGPLRR 119
Query: 225 VPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270
V + + H L+ C +L GD L VL G+L PLL
Sbjct: 120 V--------LTHIDHSLSRQNCPFLAGDTESLADIVLWGALYPLLQ 157
>sp|P46349|GABP_BACSU GABA permease OS=Bacillus subtilis (strain 168) GN=gabP PE=2 SV=3
Length = 469
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 26/181 (14%)
Query: 114 SIRTMAQETLGDWGG-TLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTV 172
S A + +G W G T+ +++ F I + +G I Y +IP ++ + T V
Sbjct: 75 SFSQYAHDAIGPWAGFTIGWLYWFFWVIVIAIEAIAGAGIIQYWFHDIPLWLTSLILTIV 134
Query: 173 FTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNWGKVPATIPVI 232
TL ++ ++ +F W + L+ + +IA ++ G++ + +G P + PV
Sbjct: 135 LTL-TNVYSVKSFGEFEYWFS-----LIKVVTIIAFLIVGFAFI-----FGFAPGSEPVG 183
Query: 233 IFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPV 292
+L GG P +SVLLG ++ + S + + +++ A + +P+
Sbjct: 184 FSNLTGK----------GGFFPEGISSVLLGIVVVIFSFMGTEIVAIA----AGETSNPI 229
Query: 293 E 293
E
Sbjct: 230 E 230
>sp|P39981|AVT2_YEAST Vacuolar amino acid transporter 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=AVT2 PE=2 SV=1
Length = 480
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 27 LEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIE 86
L + ++ + +K ++ A + + +G+GI+ P AGI LS V GF++
Sbjct: 55 LVNDVLRENDKKSSMRMAFMNLANSILGAGIITQPFAIKNAGILGGLLSY-VALGFIVDW 113
Query: 87 ALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146
L LI IN++L GKR + + + +G G L + I Y
Sbjct: 114 TLRLIVINLTL-AGKR-----------TYQGTVEHVMGKKGKLLILFTNGLFAFGGCIGY 161
Query: 147 CSKSGEILYHLL 158
C G+ + H+L
Sbjct: 162 CIIIGDTIPHVL 173
>sp|Q887P9|ALG8_PSESM Glycosyltransferase alg8 OS=Pseudomonas syringae pv. tomato (strain
DC3000) GN=alg8 PE=3 SV=1
Length = 493
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 309 AFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFT 368
A+ ++ ++G L+ FF+ L SW TK S++ F G N W ++F+
Sbjct: 423 AYPMILYYNQIVGALMKIYVFFR--LDRQSWTRQDTKLSRDMASFQGWFNTWSSRTMTFS 480
Query: 369 A 369
A
Sbjct: 481 A 481
>sp|P56192|SYMC_HUMAN Methionine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=MARS PE=1
SV=2
Length = 900
Score = 32.0 bits (71), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 12/109 (11%)
Query: 166 GFLFTT--VFTLLISIGGTRATDQFNQWLT--ASMIGLLVAIEVIAVVVGGWSGLDGSGN 221
+LF+T + + G D NQWL A+ + ++ + +VV G G D G+
Sbjct: 57 NYLFSTSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGS 116
Query: 222 WGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270
+ + + H L+ C +L G+ L VL G+L PLL
Sbjct: 117 VRRA--------LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQ 157
>sp|Q3YXB3|TDCC_SHISS Threonine/serine transporter TdcC OS=Shigella sonnei (strain Ss046)
GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q83Q28|TDCC_SHIFL Threonine/serine transporter TdcC OS=Shigella flexneri GN=tdcC PE=3
SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q0T0F2|TDCC_SHIF8 Threonine/serine transporter TdcC OS=Shigella flexneri serotype 5b
(strain 8401) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B1LFL8|TDCC_ECOSM Threonine/serine transporter TdcC OS=Escherichia coli (strain
SMS-3-5 / SECEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7NDA4|TDCC_ECOLU Threonine/serine transporter TdcC OS=Escherichia coli O17:K52:H18
(strain UMN026 / ExPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|P0AAD8|TDCC_ECOLI Threonine/serine transporter TdcC OS=Escherichia coli (strain K12)
GN=tdcC PE=1 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B1IRJ9|TDCC_ECOLC Threonine/serine transporter TdcC OS=Escherichia coli (strain ATCC
8739 / DSM 1576 / Crooks) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|A8A4S9|TDCC_ECOHS Threonine/serine transporter TdcC OS=Escherichia coli O9:H4 (strain
HS) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B1XGT1|TDCC_ECODH Threonine/serine transporter TdcC OS=Escherichia coli (strain K12 /
DH10B) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|C4ZR30|TDCC_ECOBW Threonine/serine transporter TdcC OS=Escherichia coli (strain K12 /
MC4100 / BW2952) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7NJY3|TDCC_ECO7I Threonine/serine transporter TdcC OS=Escherichia coli O7:K1 (strain
IAI39 / ExPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B5YS06|TDCC_ECO5E Threonine/serine transporter TdcC OS=Escherichia coli O157:H7
(strain EC4115 / EHEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|P0AAD9|TDCC_ECO57 Threonine/serine transporter TdcC OS=Escherichia coli O157:H7
GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|A7ZS06|TDCC_ECO24 Threonine/serine transporter TdcC OS=Escherichia coli O139:H28
(strain E24377A / ETEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|A8AQ08|TDCC_CITK8 Threonine/serine transporter TdcC OS=Citrobacter koseri (strain
ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q31WR5|TDCC_SHIBS Threonine/serine transporter TdcC OS=Shigella boydii serotype 4
(strain Sb227) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B2U0A0|TDCC_SHIB3 Threonine/serine transporter TdcC OS=Shigella boydii serotype 18
(strain CDC 3083-94 / BS512) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q1R6L7|TDCC_ECOUT Threonine/serine transporter TdcC OS=Escherichia coli (strain UTI89
/ UPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B6I491|TDCC_ECOSE Threonine/serine transporter TdcC OS=Escherichia coli (strain SE11)
GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q8FDC3|TDCC_ECOL6 Threonine/serine transporter TdcC OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q0TCY8|TDCC_ECOL5 Threonine/serine transporter TdcC OS=Escherichia coli O6:K15:H31
(strain 536 / UPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|A1AG28|TDCC_ECOK1 Threonine/serine transporter TdcC OS=Escherichia coli O1:K1 / APEC
GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7M023|TDCC_ECO8A Threonine/serine transporter TdcC OS=Escherichia coli O8 (strain
IAI1) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7N0B7|TDCC_ECO81 Threonine/serine transporter TdcC OS=Escherichia coli O81 (strain
ED1a) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7LH53|TDCC_ECO55 Threonine/serine transporter TdcC OS=Escherichia coli (strain 55989
/ EAEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7MB46|TDCC_ECO45 Threonine/serine transporter TdcC OS=Escherichia coli O45:K1
(strain S88 / ExPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B7UJ20|TDCC_ECO27 Threonine/serine transporter TdcC OS=Escherichia coli O127:H6
(strain E2348/69 / EPEC) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|Q8ZLW1|TDCC_SALTY Threonine/serine transporter TdcC OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
>sp|B4TVX7|TDCC_SALSV Threonine/serine transporter TdcC OS=Salmonella schwarzengrund
(strain CVM19633) GN=tdcC PE=3 SV=1
Length = 443
Score = 32.0 bits (71), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 48 IIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEE 107
+ GT+IG+G+L P +A G+ P L L++ + I + +L R G
Sbjct: 28 LFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYP-------IAFYCHRALARLCLSGSNP 80
Query: 108 NEFEVISIRTMAQETLGDWGGTLATVFYVF 137
+ +I +E G GG + T Y F
Sbjct: 81 SG----NITETVEEHFGKTGGVVITFLYFF 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 131,210,795
Number of Sequences: 539616
Number of extensions: 5382466
Number of successful extensions: 14735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 14657
Number of HSP's gapped (non-prelim): 138
length of query: 383
length of database: 191,569,459
effective HSP length: 119
effective length of query: 264
effective length of database: 127,355,155
effective search space: 33621760920
effective search space used: 33621760920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)