Query 042761
Match_columns 383
No_of_seqs 234 out of 1715
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 09:11:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10483 tryptophan permease; 100.0 2.1E-42 4.4E-47 338.2 30.9 310 35-382 7-338 (414)
2 PRK09664 tryptophan permease T 100.0 1.7E-41 3.7E-46 331.4 30.5 310 37-382 7-339 (415)
3 PF03222 Trp_Tyr_perm: Tryptop 100.0 6.3E-40 1.4E-44 322.9 30.2 308 37-382 1-330 (394)
4 PRK15132 tyrosine transporter 100.0 3.5E-39 7.6E-44 316.6 30.4 305 40-382 4-327 (403)
5 TIGR00837 araaP aromatic amino 100.0 1.3E-33 2.7E-38 278.5 26.4 303 44-382 2-324 (381)
6 COG0814 SdaC Amino acid permea 100.0 1.6E-33 3.6E-38 279.1 26.4 289 34-336 4-317 (415)
7 PRK13629 threonine/serine tran 100.0 3.1E-30 6.7E-35 252.6 32.0 281 42-336 22-348 (443)
8 TIGR00814 stp serine transport 100.0 1.8E-27 3.9E-32 234.2 32.0 284 41-336 5-313 (397)
9 PRK10435 cadB lysine/cadaverin 99.9 3.9E-24 8.6E-29 214.5 29.7 311 34-373 2-326 (435)
10 KOG1303 Amino acid transporter 99.9 1.5E-24 3.3E-29 214.2 21.1 290 35-338 34-339 (437)
11 PRK10655 potE putrescine trans 99.9 2.1E-23 4.7E-28 209.4 28.7 312 35-374 4-329 (438)
12 PRK10249 phenylalanine transpo 99.9 1.3E-22 2.7E-27 204.9 30.8 313 34-374 18-349 (458)
13 COG1113 AnsP Gamma-aminobutyra 99.9 1.1E-23 2.4E-28 203.9 21.7 312 35-374 11-343 (462)
14 TIGR00906 2A0303 cationic amin 99.9 5.2E-23 1.1E-27 211.8 27.7 313 34-374 25-371 (557)
15 PRK11387 S-methylmethionine tr 99.9 2.7E-22 5.9E-27 203.2 32.5 312 35-373 12-345 (471)
16 PRK10746 putative transport pr 99.9 2.4E-22 5.1E-27 202.9 31.5 312 35-374 8-340 (461)
17 PRK15049 L-asparagine permease 99.9 2.5E-22 5.3E-27 204.6 31.1 312 34-373 25-359 (499)
18 PRK10644 arginine:agmatin anti 99.9 2.5E-22 5.5E-27 202.0 30.3 314 34-375 5-332 (445)
19 PTZ00206 amino acid transporte 99.9 1.6E-22 3.6E-27 204.0 28.5 283 36-335 57-367 (467)
20 PRK10238 aromatic amino acid t 99.9 3.5E-22 7.6E-27 201.5 30.6 314 34-375 9-341 (456)
21 TIGR01773 GABAperm gamma-amino 99.9 5.7E-22 1.2E-26 199.9 31.0 313 34-374 9-342 (452)
22 PRK10580 proY putative proline 99.9 1.3E-21 2.9E-26 197.5 32.9 312 34-373 6-338 (457)
23 TIGR00905 2A0302 transporter, 99.9 3.7E-22 8.1E-27 202.3 28.9 311 35-373 5-338 (473)
24 TIGR03810 arg_ornith_anti argi 99.9 7.5E-22 1.6E-26 199.8 29.3 310 37-373 1-334 (468)
25 TIGR00909 2A0306 amino acid tr 99.9 6.5E-22 1.4E-26 198.1 28.3 310 36-373 2-335 (429)
26 PRK11049 D-alanine/D-serine/gl 99.9 3E-21 6.4E-26 195.5 32.1 312 35-374 18-351 (469)
27 PRK10836 lysine transporter; P 99.9 3.4E-21 7.5E-26 196.0 32.3 313 34-374 12-353 (489)
28 PRK11021 putative transporter; 99.9 5.1E-21 1.1E-25 190.6 28.9 304 39-374 1-317 (410)
29 TIGR00913 2A0310 amino acid pe 99.9 1.2E-20 2.5E-25 191.7 30.4 313 36-374 1-346 (478)
30 TIGR00908 2A0305 ethanolamine 99.9 1.4E-20 3.1E-25 189.2 29.6 314 35-375 5-334 (442)
31 PRK10197 gamma-aminobutyrate t 99.9 1.9E-20 4.2E-25 188.4 29.2 299 47-373 2-321 (446)
32 PRK11357 frlA putative fructos 99.9 2.2E-20 4.7E-25 188.0 26.8 316 34-375 5-339 (445)
33 TIGR00912 2A0309 spore germina 99.9 2.1E-19 4.4E-24 176.0 30.8 287 37-338 1-300 (359)
34 COG0833 LysP Amino acid transp 99.9 1.8E-20 3.9E-25 185.1 21.7 313 35-374 42-382 (541)
35 PF01490 Aa_trans: Transmembra 99.9 1.2E-23 2.6E-28 208.9 -4.3 284 37-337 1-305 (409)
36 TIGR00911 2A0308 L-type amino 99.9 4.2E-19 9.1E-24 181.3 28.2 327 22-374 25-375 (501)
37 PLN03074 auxin influx permease 99.9 3.1E-19 6.8E-24 179.8 26.5 292 36-334 43-341 (473)
38 PF13520 AA_permease_2: Amino 99.8 1.4E-18 2.9E-23 173.8 28.3 306 39-375 1-330 (426)
39 KOG1287 Amino acid transporter 99.8 2.2E-19 4.7E-24 176.6 18.8 291 34-338 9-321 (479)
40 KOG1304 Amino acid transporter 99.8 3.6E-19 7.9E-24 173.8 18.8 288 36-337 44-353 (449)
41 TIGR00930 2a30 K-Cl cotranspor 99.8 7.7E-18 1.7E-22 181.5 27.4 317 35-375 74-447 (953)
42 KOG1286 Amino acid transporter 99.8 1.1E-18 2.4E-23 177.4 15.5 318 33-375 26-378 (554)
43 COG0531 PotE Amino acid transp 99.8 8.1E-17 1.8E-21 162.5 28.0 314 34-374 9-344 (466)
44 TIGR03428 ureacarb_perm permea 99.8 6.1E-16 1.3E-20 157.0 30.5 314 35-376 11-359 (475)
45 COG3949 Uncharacterized membra 99.8 4.5E-16 9.7E-21 144.9 24.7 280 42-339 6-294 (349)
46 PF00324 AA_permease: Amino ac 99.7 2.2E-18 4.7E-23 175.0 7.8 304 46-375 4-347 (478)
47 PF03845 Spore_permease: Spore 99.7 1.2E-14 2.6E-19 140.2 31.3 285 38-338 1-296 (320)
48 KOG1305 Amino acid transporter 99.7 2.4E-16 5.2E-21 155.3 17.4 286 36-338 3-313 (411)
49 PRK15238 inner membrane transp 99.7 5.3E-14 1.1E-18 143.6 28.8 310 35-373 5-372 (496)
50 TIGR00907 2A0304 amino acid pe 99.7 9.7E-14 2.1E-18 141.2 30.0 314 35-373 10-363 (482)
51 TIGR00910 2A0307_GadC glutamat 99.6 1.3E-13 2.8E-18 140.9 28.4 308 35-373 2-338 (507)
52 TIGR03813 put_Glu_GABA_T putat 99.6 2.5E-13 5.4E-18 137.9 29.6 305 37-373 1-336 (474)
53 KOG4303 Vesicular inhibitory a 99.5 1E-14 2.3E-19 135.6 7.8 296 30-337 108-411 (524)
54 KOG3832 Predicted amino acid t 99.4 9.5E-13 2.1E-17 114.6 12.1 208 40-249 14-299 (319)
55 TIGR00796 livcs branched-chain 99.2 3.9E-08 8.6E-13 96.3 28.7 267 46-335 2-301 (378)
56 TIGR00835 agcS amino acid carr 99.1 2.1E-07 4.6E-12 92.1 30.4 292 37-337 45-368 (425)
57 TIGR02119 panF sodium/pantothe 99.0 1.3E-06 2.8E-11 88.8 33.3 291 34-337 37-354 (471)
58 PRK09442 panF sodium/panthothe 99.0 2.6E-06 5.6E-11 86.9 33.9 289 34-336 38-354 (483)
59 PF00474 SSF: Sodium:solute sy 98.9 1.8E-06 3.9E-11 86.0 26.2 288 36-338 5-329 (406)
60 TIGR00813 sss transporter, SSS 98.9 8E-06 1.7E-10 81.5 30.7 284 36-337 2-330 (407)
61 PRK09395 actP acetate permease 98.8 6.7E-05 1.5E-09 77.8 34.9 148 35-197 67-217 (551)
62 PRK12488 acetate permease; Pro 98.8 4.6E-05 1E-09 78.9 33.6 149 35-198 65-216 (549)
63 PF01235 Na_Ala_symp: Sodium:a 98.8 1.7E-05 3.7E-10 78.3 28.6 289 34-334 14-338 (416)
64 KOG1289 Amino acid transporter 98.7 2.1E-06 4.5E-11 85.9 21.5 310 35-375 46-400 (550)
65 COG1115 AlsT Na+/alanine sympo 98.7 3.2E-05 6.9E-10 76.0 28.6 292 34-337 58-385 (452)
66 TIGR02711 symport_actP cation/ 98.7 0.0001 2.2E-09 76.4 33.5 285 36-336 66-389 (549)
67 TIGR02121 Na_Pro_sym sodium/pr 98.7 0.0004 8.7E-09 71.0 36.1 291 34-337 33-354 (487)
68 COG0591 PutP Na+/proline sympo 98.6 0.00016 3.4E-09 73.9 32.0 153 36-198 37-191 (493)
69 PRK11017 codB cytosine permeas 98.5 0.00023 5E-09 70.9 30.4 190 65-270 37-230 (404)
70 TIGR03648 Na_symport_lg probab 98.5 0.00054 1.2E-08 71.1 32.7 148 34-196 29-179 (552)
71 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.0003 6.5E-09 71.0 28.9 222 34-270 9-254 (442)
72 PF05525 Branch_AA_trans: Bran 98.4 0.00062 1.3E-08 67.7 28.4 274 40-335 4-307 (427)
73 COG1457 CodB Purine-cytosine p 98.4 0.00034 7.3E-09 69.6 26.5 158 114-273 82-245 (442)
74 PRK15419 proline:sodium sympor 98.4 0.0041 8.9E-08 63.8 35.2 153 34-198 37-196 (502)
75 PRK11375 allantoin permease; P 98.4 0.0004 8.7E-09 70.8 27.3 283 32-335 20-342 (484)
76 TIGR02358 thia_cytX probable h 98.3 0.0017 3.7E-08 64.3 29.0 245 67-335 26-277 (386)
77 COG0733 Na+-dependent transpor 98.3 0.0018 3.9E-08 64.0 28.0 287 37-338 7-339 (439)
78 PRK15433 branched-chain amino 98.3 0.00086 1.9E-08 66.8 26.0 275 40-337 9-313 (439)
79 PRK10484 putative transporter; 98.2 0.0065 1.4E-07 62.7 33.0 289 34-336 35-362 (523)
80 COG4145 PanF Na+/panthothenate 98.1 0.0073 1.6E-07 58.1 28.0 289 36-338 38-354 (473)
81 PF01566 Nramp: Natural resist 98.0 0.003 6.6E-08 61.9 24.6 243 82-338 21-289 (358)
82 COG4147 DhlC Predicted symport 98.0 0.0029 6.4E-08 62.6 22.6 263 57-335 62-377 (529)
83 PRK00701 manganese transport p 98.0 0.0025 5.4E-08 64.2 22.9 108 82-199 73-182 (439)
84 PF02133 Transp_cyt_pur: Perme 98.0 0.00056 1.2E-08 68.9 18.2 150 35-199 5-173 (440)
85 TIGR01197 nramp NRAMP (natural 97.9 0.0084 1.8E-07 59.4 24.5 142 46-202 11-155 (390)
86 COG1914 MntH Mn2+ and Fe2+ tra 97.8 0.0049 1.1E-07 61.2 22.0 149 37-200 15-164 (416)
87 PHA02764 hypothetical protein; 97.8 0.0023 5.1E-08 60.2 18.4 92 35-139 10-103 (399)
88 COG1953 FUI1 Cytosine/uracil/t 97.7 0.019 4.2E-07 57.6 23.3 217 113-334 103-355 (497)
89 COG1114 BrnQ Branched-chain am 97.7 0.07 1.5E-06 52.4 26.3 272 40-335 6-309 (431)
90 COG1966 CstA Carbon starvation 97.6 0.0066 1.4E-07 61.2 18.2 105 40-156 53-157 (575)
91 KOG2083 Na+/K+ symporter [Inor 97.4 0.0012 2.6E-08 66.9 11.3 266 57-337 50-349 (643)
92 PF02554 CstA: Carbon starvati 97.4 0.049 1.1E-06 52.8 21.1 106 39-156 52-157 (376)
93 PRK15015 carbon starvation pro 96.8 0.084 1.8E-06 54.7 17.3 98 46-155 90-187 (701)
94 TIGR00796 livcs branched-chain 95.3 0.64 1.4E-05 45.9 15.1 74 113-187 255-329 (378)
95 KOG1288 Amino acid transporter 95.1 0.094 2E-06 54.4 8.5 39 246-284 317-355 (945)
96 KOG1291 Mn2+ and Fe2+ transpor 94.7 0.58 1.3E-05 46.7 12.6 79 82-170 68-146 (503)
97 PF00209 SNF: Sodium:neurotran 94.7 5.6 0.00012 41.1 20.7 55 39-94 5-60 (523)
98 PF05525 Branch_AA_trans: Bran 94.7 1.1 2.3E-05 45.0 14.6 75 113-188 261-336 (427)
99 PF02028 BCCT: BCCT family tra 93.6 9.8 0.00021 38.9 25.6 27 34-60 70-96 (485)
100 COG1114 BrnQ Branched-chain am 92.9 3.5 7.6E-05 40.8 14.2 73 114-187 264-337 (431)
101 KOG2082 K+/Cl- cotransporter K 92.8 0.63 1.4E-05 48.9 9.3 150 40-203 116-287 (1075)
102 PRK09928 choline transport pro 91.9 19 0.00042 38.2 24.0 25 35-59 89-113 (679)
103 PRK15433 branched-chain amino 90.5 5.6 0.00012 40.0 13.0 71 115-186 267-337 (439)
104 KOG2349 Na+:iodide/myo-inosito 87.2 3.3 7.1E-05 43.0 8.9 218 36-269 44-285 (585)
105 TIGR00842 bcct choline/carniti 86.7 39 0.00084 34.3 20.9 25 36-60 34-58 (453)
106 PRK03356 L-carnitine/gamma-but 85.7 46 0.001 34.2 23.2 25 36-60 83-107 (504)
107 COG1292 BetT Choline-glycine b 85.3 49 0.0011 34.1 22.7 25 36-60 85-109 (537)
108 PRK09950 putative transporter; 84.1 55 0.0012 33.7 22.9 147 36-193 81-260 (506)
109 KOG1289 Amino acid transporter 80.0 36 0.00077 35.1 12.7 41 113-153 325-365 (550)
110 KOG2466 Uridine permease/thiam 53.9 2.7E+02 0.0058 28.7 15.5 33 163-196 187-219 (572)
111 PF03806 ABG_transport: AbgT p 48.5 3.3E+02 0.0071 28.1 12.5 86 81-179 305-396 (502)
112 COG0586 DedA Uncharacterized m 33.3 3.5E+02 0.0076 24.1 12.5 40 113-152 97-136 (208)
113 PF11085 YqhR: Conserved membr 30.9 2.6E+02 0.0057 24.3 7.3 62 51-137 47-110 (173)
114 PF11368 DUF3169: Protein of u 30.7 4.2E+02 0.0092 24.2 13.7 14 43-56 11-24 (248)
115 PF03169 OPT: OPT oligopeptide 30.5 6.7E+02 0.014 26.5 13.0 58 54-125 368-427 (624)
116 COG5336 Uncharacterized protei 29.8 2.2E+02 0.0047 22.9 6.0 33 47-80 52-84 (116)
117 PF11990 DUF3487: Protein of u 27.5 3.4E+02 0.0073 22.2 7.2 42 26-70 10-51 (121)
118 PF12666 PrgI: PrgI family pro 23.7 3.3E+02 0.0071 20.6 6.3 26 38-63 16-41 (93)
No 1
>PRK10483 tryptophan permease; Provisional
Probab=100.00 E-value=2.1e-42 Score=338.22 Aligned_cols=310 Identities=25% Similarity=0.385 Sum_probs=266.1
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
++++++..+.++++.||+||+|+|+||.+.+..|+.+++++++++|+++.+++++++|.+.+++++ .+
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g------------~~ 74 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIG------------SS 74 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CC
Confidence 467799999999999999999999999999999999999999999999999999999998877653 69
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh-----CCchhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL-----NIPESVSGFLFTTVFTLLISIGGTRATDQFN 189 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~-----~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~ 189 (383)
+.+++|+++||.++.+.++++.+.+|+.++||+++.|+.+++.+ ++|.+...++|+++++.+++ .|.|.++|+|
T Consensus 75 ~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~-~gt~~vd~~n 153 (414)
T PRK10483 75 FDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVW-LSTKAVSRMT 153 (414)
T ss_pred HHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 99999999999999999999999999999999999999999887 46888999999999999886 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC--CC-C----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHH
Q 042761 190 QWLTASMIGLLVAIEVIAVVVGGWS--GL-D----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLL 262 (383)
Q Consensus 190 ~~~~~~~i~~l~~iiv~~~~~~~~~--~~-~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~ 262 (383)
+++...|++.++..+.. ..++.+ ++ + ...+|...+.++|++++||++|+++|++.+++++|+||++|++..
T Consensus 154 ~~l~~~~i~~f~~~~~~--l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i 231 (414)
T PRK10483 154 AIVLGAKVITFFLTFGS--LLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHHHH--HHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence 99999998887765432 233332 21 1 112244688999999999999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccc---------cccCHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 263 GSLIPLLSLLVWDAISLGLSAQAD---------QVIDPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 263 ~~~i~~~~Yi~~~~~~~g~~~~~~---------~~~~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
|..+++++|++|.++++|..|+++ +.+..++.+++ .+++++..+.++|+.+|+.|||+|+++|+.|+++|
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999654 11112344443 45678899999999999999999999999999999
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST 382 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~ 382 (383)
.++.++. . .+| ...-+++.+||+++++
T Consensus 312 ~~k~~~~----~---------------~~r----~~~~~ltflPPl~~al 338 (414)
T PRK10483 312 LFGFDDS----A---------------MGR----FKTALLTFLPPVVGGL 338 (414)
T ss_pred HhCCCCc----c---------------ccc----eeeehhhHhhHHHHHH
Confidence 9986531 0 455 6677899999999874
No 2
>PRK09664 tryptophan permease TnaB; Provisional
Probab=100.00 E-value=1.7e-41 Score=331.43 Aligned_cols=310 Identities=23% Similarity=0.319 Sum_probs=260.0
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
||.+..+.++++.||+||||+|+||.+.+++|+.+++++++++|+++.++++++.|.+.++|++ .++.
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g------------~~l~ 74 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVG------------SSFN 74 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------CCHH
Confidence 4448889999999999999999999999999999999999999999999999999999887653 6999
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh------CCchhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL------NIPESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
+++|+++||.++.+.++++.+.+|+.++||+.+.|+.+++.+ ++|.+...++|+++++.+++ .|.|.++++|+
T Consensus 75 tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~-~gt~~vd~~nr 153 (415)
T PRK09664 75 TITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLW-ISSLAASRITS 153 (415)
T ss_pred HHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHH-hchhHHHHHHH
Confidence 999999999999999999999999999999999999999887 34677778999999998886 79999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCC-C-CC-----cCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761 191 WLTASMIGLLVAIEVIAVVVGGWSGLDG-S-GN-----WGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263 (383)
Q Consensus 191 ~~~~~~i~~l~~iiv~~~~~~~~~~~~~-~-~~-----~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~ 263 (383)
++...|++.++..+.......+.+++.. + .. +...+.++|++++||++|+++|++.+++++|+|+.+|++..|
T Consensus 154 ~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~G 233 (415)
T PRK09664 154 LFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFG 233 (415)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHH
Confidence 9998888877765432222222222211 1 11 234788999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccc---------ccCHHHHH-hhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 042761 264 SLIPLLSLLVWDAISLGLSAQADQ---------VIDPVELL-MRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQ 333 (383)
Q Consensus 264 ~~i~~~~Yi~~~~~~~g~~~~~~~---------~~~pl~~l-~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~ 333 (383)
..+++++|++|..+++|++|+++- .++.+... +...++++..+.++|+.+|+.|||+|+++|+.|+++|.
T Consensus 234 s~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~ 313 (415)
T PRK09664 234 SLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL 313 (415)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997541 11112222 23456789999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761 334 LKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST 382 (383)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~ 382 (383)
++.++. + .+| ...-++|.+||++.++
T Consensus 314 ~~~~~~--~-----------------~~r----~~~~~ltflPPl~~al 339 (415)
T PRK09664 314 FKIDNS--H-----------------GGR----FKTVLLTFLPPALLYL 339 (415)
T ss_pred hCCCCc--c-----------------ccc----eeeehhhHhhhHHHHH
Confidence 976541 0 456 7778899999998874
No 3
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=100.00 E-value=6.3e-40 Score=322.88 Aligned_cols=308 Identities=32% Similarity=0.596 Sum_probs=263.7
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
|+.+.++++++++||+||+|+|+||.+.+..|+.+++++++++|.++++++++++|+..+.+++ .++.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~------------~~~~ 68 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEG------------SSLT 68 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHH
Confidence 4568899999999999999999999999999999999999999999999999999999877653 6999
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC------CchhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN------IPESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
+++++++||+++++.++++++..|+.+++|+.+.++.++++++ .+++....+|.++++.+++ .|.|.++|+|+
T Consensus 69 ~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~-~g~~~v~~~n~ 147 (394)
T PF03222_consen 69 SMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVY-FGTKAVDRINR 147 (394)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH-hhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999873 4567888888888887776 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC--CCC----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHH
Q 042761 191 WLTASMIGLLVAIEVIAVVVGGWS--GLD----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGS 264 (383)
Q Consensus 191 ~~~~~~i~~l~~iiv~~~~~~~~~--~~~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~ 264 (383)
+++..|++.++.+++.. .++++ ++. .+.+|...+.++|++++||++|+++|++++++++|+||.+|++..|.
T Consensus 148 ~lv~~~i~~~~~l~~~~--~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs 225 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYL--IPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHHHHHHHH--hhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHH
Confidence 99999988887765433 44443 321 34678889999999999999999999999999889999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCcccc-----ccCH----HHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 265 LIPLLSLLVWDAISLGLSAQADQ-----VIDP----VELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 265 ~i~~~~Yi~~~~~~~g~~~~~~~-----~~~p----l~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
.+++++|++|.++++|.+|+++. .+.+ ...+++ .+++++..+..+|+.+|+.|||+|+++|++|+++|.+
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997641 1111 223333 4678899999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761 335 KSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST 382 (383)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~ 382 (383)
+.++. + .+| ...-+++.+||+++|+
T Consensus 306 k~~~~----~---------------~~r----~~~~~ltf~ppl~~a~ 330 (394)
T PF03222_consen 306 KLKNN----S---------------SGR----LKTWLLTFLPPLIFAL 330 (394)
T ss_pred cCCcc----c---------------cch----HHHHHHHHHhHHHHHH
Confidence 76321 0 344 5566889999998874
No 4
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=100.00 E-value=3.5e-39 Score=316.56 Aligned_cols=305 Identities=27% Similarity=0.453 Sum_probs=257.9
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHH
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMA 119 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a 119 (383)
+..+.+++++||+||+|+|+||.+.+..|+++++++++++|.++.+++++++|++.+.+++ .++.+++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~------------~~~~~~a 71 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPAD------------TGLGTLA 71 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCHHHHH
Confidence 7889999999999999999999999999999999999999999999999999987655432 5899999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh------CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 120 QETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL------NIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 120 ~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
|+++||.++++.++++++.+|..+++|.++.|+.+++.+ +++.+.+.+.|+++++.+++ .|.|.++++|++++
T Consensus 72 ~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~-~g~~~v~~~n~~L~ 150 (403)
T PRK15132 72 KRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVC-VGTSSVDLFNRFLF 150 (403)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 999999999999999999999999999999888877665 35667788889988887775 69999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCC--CC-CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042761 194 ASMIGLLVAIEVIAVVVGGWSG--LD-GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~~~~~~~--~~-~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~ 270 (383)
..|++.++.++. ...++++. +. .+.++...+.++|++++||++|+++|++++++++|+||.+|++..|..+++++
T Consensus 151 ~~~ii~~~~~~~--~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~ 228 (403)
T PRK15132 151 SAKIIFLVVMLA--LMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVA 228 (403)
T ss_pred HHHHHHHHHHHH--HHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 999877765542 34555542 21 22233358899999999999999999999999889999999999999999999
Q ss_pred HHHHHHHHhccCCcccc---------ccCHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q 042761 271 LLVWDAISLGLSAQADQ---------VIDPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWN 340 (383)
Q Consensus 271 Yi~~~~~~~g~~~~~~~---------~~~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~ 340 (383)
|++|.++++|..|.++- .++.++.+++ ...+++..+..+|+.+|+.|||+|+++|+.|+++|.++++..
T Consensus 229 yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~- 307 (403)
T PRK15132 229 YIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT- 307 (403)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc-
Confidence 99999999999997641 1123455554 467889999999999999999999999999999999975421
Q ss_pred CCCCCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761 341 SSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST 382 (383)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~ 382 (383)
+ .+| ...-+++.+||+++++
T Consensus 308 ---~---------------~~r----~~~~~l~flppli~a~ 327 (403)
T PRK15132 308 ---V---------------GGR----LQTGLITFLPPLAFAL 327 (403)
T ss_pred ---c---------------cCC----chhehhhHHHHHHHHH
Confidence 0 335 6677899999998874
No 5
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=100.00 E-value=1.3e-33 Score=278.49 Aligned_cols=303 Identities=26% Similarity=0.432 Sum_probs=248.5
Q ss_pred HHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHh
Q 042761 44 AVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETL 123 (383)
Q Consensus 44 ~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 123 (383)
++++++|++||+|+|++|..+++.|+.++++.++++|+++.+++++++|+..++|++ .++++++++.+
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~------------~~~~~~~~~~~ 69 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGG------------ASFNTIAKDLL 69 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHh
Confidence 345789999999999999999999988999999999999999999999999888753 58999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC------CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q 042761 124 GDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN------IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMI 197 (383)
Q Consensus 124 G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i 197 (383)
||+++++.++.+++.+|..+++|....++++.++++ .|.+...+++.+++..+++ .|.|..+++|++++..++
T Consensus 70 G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l 148 (381)
T TIGR00837 70 GKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKI 148 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877752 4556666667777777775 799999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCCC----CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 042761 198 GLLVAIEVIAVVVGGWSGLDG----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLV 273 (383)
Q Consensus 198 ~~l~~iiv~~~~~~~~~~~~~----~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~ 273 (383)
+.++++++.+....+.++..+ +.++.++..++++.+++|++|+++|.+.++++||+||++|++..+..+++++|++
T Consensus 149 ~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l 228 (381)
T TIGR00837 149 IAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYIL 228 (381)
T ss_pred HHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 777666543332222222211 2356678889999999999999999999999778999999999999999999999
Q ss_pred HHHHHhccCCccccc--------cCH-HHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCC
Q 042761 274 WDAISLGLSAQADQV--------IDP-VELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSP 343 (383)
Q Consensus 274 ~~~~~~g~~~~~~~~--------~~p-l~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~ 343 (383)
++.+++|.+|.++-. .++ ++.+.. .+.++...++..++.+|+.||++++.+|++|+++|.+++.+.
T Consensus 229 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~---- 304 (381)
T TIGR00837 229 WQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS---- 304 (381)
T ss_pred HHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc----
Confidence 999999999986511 123 223333 356678999999999999999999999999999999986431
Q ss_pred CCCCCCcccccccccccccCcchheeeeeeccccccccc
Q 042761 344 TKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPSLFIST 382 (383)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp~~~~~ 382 (383)
+ .+| +.+.+++.+||+++++
T Consensus 305 ~---------------~~~----~~~~~~~~~~pl~~a~ 324 (381)
T TIGR00837 305 K---------------KGR----FKTGLLTFLPPLVFAL 324 (381)
T ss_pred c---------------CCC----chhhhhhHHhHHHHHH
Confidence 1 234 6778899999999874
No 6
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-33 Score=279.14 Aligned_cols=289 Identities=28% Similarity=0.480 Sum_probs=247.3
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.++++.+..+++++++||+||||+|++|.+++..|+++++++++++|.+++++++++.|+..+.|+++ .
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-----------~ 72 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-----------A 72 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-----------c
Confidence 45677899999999999999999999999999999999999999999999999999999998877631 3
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-------CchhHHHHHHHHHHHHHHHhcchhhHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-------IPESVSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-------l~~~~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
++.+++++++||.++++.++.+.+.+|+.+.+|..+.|+.+++.++ .++.+..++++.++..+.+ .+.+...
T Consensus 73 ~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~-~~~~~~l 151 (415)
T COG0814 73 SITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSW-LGTLAVL 151 (415)
T ss_pred cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHH-hchhHHH
Confidence 8999999999999999999999999999999999999999998873 4667788888888787775 7999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCC--C-C---C-CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh-HHH
Q 042761 187 QFNQWLTASMIGLLVAIEVIAVVVGGWSG--L-D---G-SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR-LRA 258 (383)
Q Consensus 187 ~~~~~~~~~~i~~l~~iiv~~~~~~~~~~--~-~---~-~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~-~~~ 258 (383)
+.++++...+++.++.+.+ ...++++. . . . +.+|...+.++|+++|||+||+++|++..+++++.++ ++|
T Consensus 152 k~ts~l~~~~v~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k 229 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVV--YLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRK 229 (415)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHH
Confidence 9999999999877776643 23444432 1 1 1 3667889999999999999999999999999877666 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcccc------ccCH---HHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042761 259 SVLLGSLIPLLSLLVWDAISLGLSAQADQ------VIDP---VELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSE 328 (383)
Q Consensus 259 ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~------~~~p---l~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~ 328 (383)
++..+..+..++|+.|.+..++.++..+. .++. ++.... ...+......++++.+|+.|||.|+.+++.|
T Consensus 230 ~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~ 309 (415)
T COG0814 230 AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFE 309 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999999999998887631 1222 223333 3556689999999999999999999999999
Q ss_pred HHHHhhcc
Q 042761 329 FFKEQLKS 336 (383)
Q Consensus 329 ~l~~~~~~ 336 (383)
+++|.+++
T Consensus 310 ~~~~~~~~ 317 (415)
T COG0814 310 GLADLFKK 317 (415)
T ss_pred hhhHHHHh
Confidence 99999987
No 7
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=100.00 E-value=3.1e-30 Score=252.56 Aligned_cols=281 Identities=18% Similarity=0.246 Sum_probs=233.0
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHH
Q 042761 42 AGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQE 121 (383)
Q Consensus 42 ~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 121 (383)
..++..++||+||||+|+||...+..|++++++.++++|.++++++..+.|...+.++. ..++.+++++
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~-----------~~~i~~v~~~ 90 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNP-----------SGNITETVEE 90 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----------CCCHHHHHHH
Confidence 34557899999999999999999999999999999999999999999999988665321 1589999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhh----hC---CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 042761 122 TLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL----LN---IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTA 194 (383)
Q Consensus 122 ~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~----~~---l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~ 194 (383)
+|||.++.+.+++|++..|..+.+|.....+.+.++ ++ .|+++..++++++++.++. .|.|.++|++++++.
T Consensus 91 ~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~-~G~~~v~kv~~~Lv~ 169 (443)
T PRK13629 91 HFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIW-FGKDLMVKVMSYLVW 169 (443)
T ss_pred HcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877765 33 4667788888888888886 699999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--CC-CC-----C--Cc---CcchhhhHHHHHHHhhhccHHHHHHH----h----cCC-
Q 042761 195 SMIGLLVAIEVIAVVVGGWSG--LD-GS-----G--NW---GKVPATIPVIIFSLVYHDLAPVLCAY----L----GGD- 252 (383)
Q Consensus 195 ~~i~~l~~iiv~~~~~~~~~~--~~-~~-----~--~~---~~~~~a~~i~~fsf~~~~~ip~l~~~----~----~~~- 252 (383)
.+++.++.+.+ ...++|+. +. .+ . +. ...+.++|++++||++|+++|++..+ + ++|
T Consensus 170 ~~i~~l~~l~~--~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~ 247 (443)
T PRK13629 170 PFIASLVLISL--SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDF 247 (443)
T ss_pred HHHHHHHHHHH--HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccch
Confidence 99887777653 34566542 21 11 1 11 13788899999999999999999887 5 235
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-----ccCH-HHHHhh-cC----c-----hhHHHHHHHHHHHHH
Q 042761 253 -LPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQ-----VIDP-VELLMR-VR----W-----SGVSVMVEAFSLMAV 315 (383)
Q Consensus 253 -~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~-----~~~p-l~~l~~-~~----~-----~~~~~~~~~~~~~al 315 (383)
+||.+|++..+..+.+++|++|.++++|.+|+++- .+.+ ++.+++ .+ . ++++++..+|+.+|+
T Consensus 248 a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI 327 (443)
T PRK13629 248 TERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAI 327 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999998761 1233 555432 22 2 678999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhcc
Q 042761 316 GTSLIGTLLGFSEFFKEQLKS 336 (383)
Q Consensus 316 ~tS~~g~~~~l~~~l~~~~~~ 336 (383)
.|||+|+++|++|.++.+..+
T Consensus 328 ~TSFlGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 328 FKSFFGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999843
No 8
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.97 E-value=1.8e-27 Score=234.21 Aligned_cols=284 Identities=19% Similarity=0.236 Sum_probs=225.5
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHH
Q 042761 41 IAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQ 120 (383)
Q Consensus 41 ~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 120 (383)
..++++.++|++||+|+|++|...++.||++.++..++++.++++.+..+.|.....+.. ..++.++++
T Consensus 5 d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p-----------~~~i~~~~~ 73 (397)
T TIGR00814 5 DTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNP-----------CEDITEVVE 73 (397)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----------CCCHHHHHH
Confidence 346778899999999999999999999999888889999999999999999986543321 158999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh------CCchh-HHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 121 ETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL------NIPES-VSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 121 ~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~l~~~-~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
+.|||++|.+.++.|+++.+..+.+|..+.++.+.+++ +.|++ ...+++.++++.++. .|.|.++|++++++
T Consensus 74 ~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~-~G~~~i~r~~~il~ 152 (397)
T TIGR00814 74 EHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMS-FGEKLLFKIMGPLV 152 (397)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHH
Confidence 99999999999999999999999999988887776664 23444 445555555566675 69999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCC-CC---CCcCcchhhhHHHHHHHhhhccHHHHH-HH---hc-CC--hhhHHHHHHH
Q 042761 194 ASMIGLLVAIEVIAVVVGGWSGLD-GS---GNWGKVPATIPVIIFSLVYHDLAPVLC-AY---LG-GD--LPRLRASVLL 262 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~~~~~~~~~-~~---~~~~~~~~a~~i~~fsf~~~~~ip~l~-~~---~~-~~--~k~~~~ai~~ 262 (383)
+.+++.++.+.+......+.+++. .| ..+..++.++|++++||++|+++|++. ++ .+ +| +||.+|++..
T Consensus 153 ~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~ 232 (397)
T TIGR00814 153 FPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG 232 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 888776666553332222223321 12 234568899999999999999999987 32 32 13 6789999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccc---c---CHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 042761 263 GSLIPLLSLLVWDAISLGLSAQADQV---I---DPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLK 335 (383)
Q Consensus 263 ~~~i~~~~Yi~~~~~~~g~~~~~~~~---~---~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~ 335 (383)
+..+.+++|+.|.+++.+.+++++-. + +.++.+++ ...+++.++..++..+|+.|||.|+++|++|.+++++.
T Consensus 233 ~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 233 ASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999987511 1 12444443 46778999999999999999999999999999999994
Q ss_pred c
Q 042761 336 S 336 (383)
Q Consensus 336 ~ 336 (383)
+
T Consensus 313 ~ 313 (397)
T TIGR00814 313 N 313 (397)
T ss_pred H
Confidence 3
No 9
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.94 E-value=3.9e-24 Score=214.51 Aligned_cols=311 Identities=14% Similarity=0.115 Sum_probs=231.8
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
+++|+++.++++++++|++||+|++.+|...+..|. ..++..+++++.....+++++|++.++|+. .
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~~P~~------------G 68 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATKNPQQ------------G 68 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------C
Confidence 467899999999999999999999999999888775 466677888888889999999999999975 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC-----chhHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI-----PESVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-----~~~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
+.++++++ +|+..+++.+|.+++..+....++....++++..+++. +..+..+.+..+++.++. .|+|...++
T Consensus 69 G~y~y~~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~-~gvk~~~~i 146 (435)
T PRK10435 69 GPIAYAGE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNM-LGGTWVSRL 146 (435)
T ss_pred ChhHHHHH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHH-HhHHHHHHH
Confidence 78889999 89999999999988766555566666666777666531 112222333334555665 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC----CC--CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHH
Q 042761 189 NQWLTASMIGLLVAIEVIAVVVGGWSG----LD--GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLL 262 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~~~~~~~----~~--~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~ 262 (383)
+.+.+..++++++.+++.+....+.++ .. .+.++.++..++...+|+|.+.+.+....+|.|+++|++||++..
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 988877776555544333322222211 11 123345677788889999999999999999997777899999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCccc--cccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 042761 263 GSLIPLLSLLVWDAISLGLSAQAD--QVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSW 339 (383)
Q Consensus 263 ~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~ 339 (383)
+..++.++|++...+..+..|.++ ..++|... +....+++...+++++.+++++++..+..+...+....+- +
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~a-r--- 302 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAA-N--- 302 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---
Confidence 999999999999999999999765 23467543 3344566778888888888999999888888776665422 1
Q ss_pred CCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 340 NSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
++..| |.+++ +||+|.|..+.+++
T Consensus 303 ------dG~lP-~~f~k---~nk~g~P~~Al~~~ 326 (435)
T PRK10435 303 ------DGNFP-KVYGE---VDKNGIPKKGLLLA 326 (435)
T ss_pred ------CCCcc-HHHHh---hCcCCCCHHHHHHH
Confidence 23355 55666 67889999887664
No 10
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.93 E-value=1.5e-24 Score=214.17 Aligned_cols=290 Identities=17% Similarity=0.166 Sum_probs=220.1
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
++|+.|++++++..++.++|+|+|+||+++++.||.+|++++++.+++++|+++++.++...++...++ |..+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-------r~~~ 106 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-------RRYR 106 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-------cCCC
Confidence 467799999999999999999999999999999999999999999999999999999999877765443 2368
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-----C---chhHHHHHHHHHHHHHHHhcchhhHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-----I---PESVSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----l---~~~~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
|.|+++++||++++.+..+.+.+..|+.++.|+...|++++.+++ . ..+...+++.++..++..+.+.....
T Consensus 107 Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~ 186 (437)
T KOG1303|consen 107 YPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLS 186 (437)
T ss_pred hHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhH
Confidence 999999999988899999999999999999999999999998873 1 12455666666666666433444444
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhcCCCC-C--CCCCCcC--cc-hhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHH
Q 042761 187 QFNQWLTASMIGLLVAIE-VIAVVVGGWSG-L--DGSGNWG--KV-PATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRAS 259 (383)
Q Consensus 187 ~~~~~~~~~~i~~l~~ii-v~~~~~~~~~~-~--~~~~~~~--~~-~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~a 259 (383)
.++..... +-....... ..+. ..+... . ....++. .. +.+++.+.|+|++|.++|+++..|+ +|++++|+
T Consensus 187 ~~S~~~av-mS~~~a~~~~~~g~-~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk-~p~~f~~~ 263 (437)
T KOG1303|consen 187 YLSLVGAV-MSTLYAVILIVLGI-ADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMK-SPPKFKKA 263 (437)
T ss_pred HHHHHHHH-HHHHHHHHHHHHhh-ccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcC-CchhhhhH
Confidence 44332222 111111111 1122 222111 1 1111121 11 6899999999999999999999995 66679999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCccccccCHHHHHhhc-CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 260 VLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRV-RWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 260 i~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl~~l~~~-~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
..+++.+++++|+.. ++.|++.+.+.+++.+ +... .+.|.....++..+++++.++...+..+.+..+...+.+.
T Consensus 264 ~lis~~~~~~~y~~v--ai~GY~aFG~~~~~~i--l~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~ 339 (437)
T KOG1303|consen 264 LLISYIIVTFLYFPV--AIIGYWAFGDSVPDNI--LLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKH 339 (437)
T ss_pred HHHHHHHHHHHHHHH--HHhhhhhhccccchhh--hhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCC
Confidence 999999999999886 4577777666554322 2222 4778999999999999999999999999999999887665
No 11
>PRK10655 potE putrescine transporter; Provisional
Probab=99.93 E-value=2.1e-23 Score=209.40 Aligned_cols=312 Identities=18% Similarity=0.156 Sum_probs=227.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
++|+++.++++++.+|++||+|++.+|..+++.|. .+++..++++++....+++++|++.++|+. .+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~------------GG 70 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKS------------GG 70 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC------------Cc
Confidence 46889999999999999999999999988877775 567778888888899999999999888875 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc--h---hHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP--E---SVSGFLFTTVFTLLISIGGTRATDQFN 189 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~--~---~~~~ii~~l~~~~~~~~~g~k~~~~~~ 189 (383)
.+.++++.+||..+++.+|.+++.......++.....+++..+++.+ . ....+.+..+++.+++ .|+|...+++
T Consensus 71 ~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~-~g~~~~~~i~ 149 (438)
T PRK10655 71 MGGYAEYAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANF-GGARITGQIS 149 (438)
T ss_pred hHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH-hCHHHHHHHH
Confidence 88999999999999999999987766555565555667777666431 1 1223333344555665 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCc---CcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761 190 QWLTASMIGLLVAIEVIAVVVGGWSGLD---GSGNW---GKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263 (383)
Q Consensus 190 ~~~~~~~i~~l~~iiv~~~~~~~~~~~~---~~~~~---~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~ 263 (383)
.+.+..+++.++.+++.+....+.++.. .+.+. .++..++....|+|.+.+....+.+|.|+|+|++||++..+
T Consensus 150 ~i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~ 229 (438)
T PRK10655 150 SVTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGG 229 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHH
Confidence 9888877766655544333322222221 12221 34555577789999999999999999987788999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q 042761 264 SLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWN 340 (383)
Q Consensus 264 ~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~ 340 (383)
..++.++|++...+..+..|.++. .++|... +.+..+++...++.+..+++..++..+...+-++.+...-++
T Consensus 230 ~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~d---- 305 (438)
T PRK10655 230 TLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADE---- 305 (438)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----
Confidence 999999999988888888887552 2356433 333445566677788888888888888887777544332221
Q ss_pred CCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 341 SSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+..| +.+++ ++|+|.|..+.++..
T Consensus 306 ------g~lP-~~~~~---v~~~~tP~~all~~~ 329 (438)
T PRK10655 306 ------GYFP-KIFSR---VTKVDAPVQGMLIIV 329 (438)
T ss_pred ------Cchh-HHHHh---hCcCCCCHHHHHHHH
Confidence 2244 44555 567799988876543
No 12
>PRK10249 phenylalanine transporter; Provisional
Probab=99.92 E-value=1.3e-22 Score=204.89 Aligned_cols=313 Identities=14% Similarity=0.077 Sum_probs=235.6
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..+|+++.++..++.+|++||+|++.+|.. .+.+|. ..++..++++++....++.++|++.++|..
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~------------ 84 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVS------------ 84 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------
Confidence 356889999999999999999999999875 456675 567778888999999999999999999985
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.+.++++++.+|+..+++.+|.+++.......+...+.+.+++.+++ .+.+.....+.+++..+++ .|+|..++++.+
T Consensus 85 Gg~~~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~-~gv~~~~~i~~~ 163 (458)
T PRK10249 85 GSFAHFAYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNL-VNVRLYGETEFW 163 (458)
T ss_pred CCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHH-hcchhhhhHHHH
Confidence 48899999999999999999999887665556666667777776653 4555555556666676775 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hc-CC-C-----CC-C----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHH
Q 042761 192 LTASMIGLLVAIEVIAVV--VG-GW-S-----GL-D----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLR 257 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~~--~~-~~-~-----~~-~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~ 257 (383)
++..|++.++.+++.++. .. +. + +. + .+++|.++..++....|+|.+.+.+..+.+|.++++|++|
T Consensus 164 ~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iP 243 (458)
T PRK10249 164 FALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIP 243 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHH
Confidence 998887665555433322 11 10 0 10 0 1234556778888899999999999999999977788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 258 ASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 258 ~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
|++..+...+.++|++...+..+..|.++. .++|... +.....++...+++++.+++..++.++..++.+..+..+=
T Consensus 244 rai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~a 323 (458)
T PRK10249 244 KAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLS 323 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888888887652 2356543 3444556777888888899999999998887775554433
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 335 KSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
++ +..| +.+++ ++|+|.|..+.+++.
T Consensus 324 rd----------g~lP-~~~~k---v~~~~~P~~All~~~ 349 (458)
T PRK10249 324 VQ----------GNAP-KFLTR---VSRRGVPINSLMLSG 349 (458)
T ss_pred cC----------CCcC-HHHHH---hCCCCCCHHHHHHHH
Confidence 22 2344 44555 567799998876653
No 13
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.92 E-value=1.1e-23 Score=203.86 Aligned_cols=312 Identities=16% Similarity=0.163 Sum_probs=256.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhh-hHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILA-LPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~-LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.+|.++..+.-++-+|..||+|.|- --.+.+.+|. .-++.+++++++.++.+..+.|+..+.|.. .
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~~------------g 77 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPVS------------G 77 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------C
Confidence 4688999999999999999999764 4456778883 334568999999999999999998877764 5
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh-CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL-NIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~-~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
|+.+++++++|++++++.+|.||+.......+.+.+.+.+++.++ ++|.|+..+.+.+++..++. .++|..++++..+
T Consensus 78 SF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL-~sVk~FGE~EfWf 156 (462)
T COG1113 78 SFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNL-ISVKVFGELEFWF 156 (462)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 68899998888888787886 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHh--hcCC---------CCC-----CCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 193 TASMIGLLVAIEVIAVV--VGGW---------SGL-----DGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~--~~~~---------~~~-----~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
..+|+++++.+++.+.. ..+. ++. -.|+++.+++.++-+.+|||++.+.+-.-+.|-++|+|.+
T Consensus 157 AlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~i 236 (462)
T COG1113 157 ALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAI 236 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHH
Confidence 99999988888765532 1111 111 1577888999999999999999999988888887667789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCH-HHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDP-VELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQ 333 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~p-l~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~ 333 (383)
|||+.--..-+.++|+.-.++++..+|+++ .-++| ++.++..+.++.+.++|++.+.|..|+.++-.++-...+..+
T Consensus 237 pkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~l 316 (462)
T COG1113 237 PKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSL 316 (462)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHH
Confidence 999998888999999998888899999975 33467 455666777888899999999999999999998888776555
Q ss_pred hcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 334 LKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
-++.+ -| |.+++ ++|||.|.-+.+++.
T Consensus 317 a~~g~----------AP-k~~~k---lsk~gVP~~ai~~s~ 343 (462)
T COG1113 317 AKQGD----------AP-KAFAK---LSKRGVPVNAILLSA 343 (462)
T ss_pred hhcCc----------cc-HhHhh---ccccCCCHHHHHHHH
Confidence 43322 23 44555 889999987776643
No 14
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.92 E-value=5.2e-23 Score=211.80 Aligned_cols=313 Identities=14% Similarity=0.145 Sum_probs=231.4
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHh--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKA--SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~--~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
..+|+++.++++++.+|.+||+|++.+|... ..+|. ..++..+++++.+...+++++|++.++|+.
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp-~~~ls~liagv~~l~~al~yaElas~~P~s----------- 92 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP-AIVLSFLISGLAAVLSGFCYAEFGARVPKA----------- 92 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------
Confidence 4578899999999999999999999999754 34674 356677888899999999999999999975
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC------------C--c-----hhHHHHHHHHH
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN------------I--P-----ESVSGFLFTTV 172 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------------l--~-----~~~~~ii~~l~ 172 (383)
.+.+.++++.+|+..+++.+|.+++.......+...+.++++.++++ . + .....+...++
T Consensus 93 -Gg~Y~y~~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l 171 (557)
T TIGR00906 93 -GSAYLYSYVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILL 171 (557)
T ss_pred -CcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHH
Confidence 47788899999999999999998876555544544555555544331 0 1 11223334444
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----------CCCCcCcchhhhHHHHHHHhhhccH
Q 042761 173 FTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLD----------GSGNWGKVPATIPVIIFSLVYHDLA 242 (383)
Q Consensus 173 ~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~~----------~~~~~~~~~~a~~i~~fsf~~~~~i 242 (383)
++.++. .|+|..+++|.+++..+++.++++++.+....+.++.. .+.++.+++.+....+|+|.+.+.+
T Consensus 172 ~~~ln~-~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v 250 (557)
T TIGR00906 172 LAVLLS-FGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAI 250 (557)
T ss_pred HHHHHH-hchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHH
Confidence 455665 69999999999999999877666655554333322211 1223446777888899999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHH
Q 042761 243 PVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD-QVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLI 320 (383)
Q Consensus 243 p~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~ 320 (383)
..+.+|.+|++|++||++..+..++.++|++...+..+..|.++ +.++|+.. +...+.++...++.+..++++.++.+
T Consensus 251 ~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~ 330 (557)
T TIGR00906 251 ATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLL 330 (557)
T ss_pred HHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999998778899999999999999999999999999998764 33466543 33455677888899999999999999
Q ss_pred HHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccc-cCcchheeeeeec
Q 042761 321 GTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWG-RNKISFTAMAMVV 374 (383)
Q Consensus 321 g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~l~~ 374 (383)
+..++....+..+-++ +..| +.+++ ++ |+|.|..+.++..
T Consensus 331 ~~~~~~sRil~amarD----------GlLP-~~fak---v~~r~~tP~~Ail~~~ 371 (557)
T TIGR00906 331 GGMFPLPRVIYAMARD----------GLLF-KWLAQ---INSKTKTPINATVVSG 371 (557)
T ss_pred HHHHHHHHHHHHHHcC----------CCcc-HHHhc---cCCCCCCcHHHHHHHH
Confidence 9999988665443322 2344 34444 44 7789988766543
No 15
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.92 E-value=2.7e-22 Score=203.17 Aligned_cols=312 Identities=15% Similarity=0.120 Sum_probs=228.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.+|+++.++++++.+|++||+|++.+|.. .+.+|....++..++++++....+++++|++.++|+. .
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~a------------G 79 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPET------------G 79 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------C
Confidence 57889999999999999999999999876 4567754456678888899999999999999999975 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
+++.++++.+|+..+++.+|.+++...........+.+.+++.+++ .+.+...+++.+++..+++ .|+|..++++.+.
T Consensus 80 G~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~in~-~gvk~~~~~~~~~ 158 (471)
T PRK11387 80 AFHVYAARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNV-VSTRFFAEGEFWF 158 (471)
T ss_pred CHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 7899999999999999999999876555544444444545544443 3444444455555566675 6999999999998
Q ss_pred HHHHHHHHHHHHHHHHhh--c-----CCC---CCC--CCCCc-----CcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 193 TASMIGLLVAIEVIAVVV--G-----GWS---GLD--GSGNW-----GKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~~--~-----~~~---~~~--~~~~~-----~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
+..|++.++.+++.+... . +.+ ... ...+| .++..++...+|+|.+.+.+..+.+|.++++|+
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 238 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKV 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhH
Confidence 888877665554433211 0 000 000 11122 235566677899999999999999999877789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
+||++..+..++.++|++..+++.+..|.++. .++|... +...+.++...++++..+++++++..+..++.+..+..
T Consensus 239 iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a 318 (471)
T PRK11387 239 IPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWS 318 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999998888888887652 2457543 34456677888899999999999999988887766544
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
+=++. ..| +.+++ ++|+|.|..+.+++
T Consensus 319 ~ardg----------~lP-~~f~~---~~~~~~P~~Ail~~ 345 (471)
T PRK11387 319 LSNEG----------TLP-ACFAR---LTKRGIPLTALSVS 345 (471)
T ss_pred HHhcC----------CcC-HHHHH---hCCCCCcHHHHHHH
Confidence 43322 344 44555 56778998776554
No 16
>PRK10746 putative transport protein YifK; Provisional
Probab=99.92 E-value=2.4e-22 Score=202.93 Aligned_cols=312 Identities=13% Similarity=0.117 Sum_probs=238.4
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.||+++.++..++.+|++||+|++..|.. .+.+|. ..++..++++++.+..+..++|++.++|+. .
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~s------------G 74 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVT------------G 74 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------C
Confidence 46889999999999999999999998875 567775 456678888888899999999999999875 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
++++++++++|+..+++.+|.+++.......+.+.+.+.+++.+++ .+.+....++.+++..+++ .|+|..++++.++
T Consensus 75 g~~~y~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~-~gv~~~~~~e~~~ 153 (461)
T PRK10746 75 SFAVYAHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANL-AAVRLYGEIEFWF 153 (461)
T ss_pred CHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 8999999999999999999999987666666677777888877764 5555555566666666775 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHh---hc-C--C-----CCCC-----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 193 TASMIGLLVAIEVIAVV---VG-G--W-----SGLD-----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~---~~-~--~-----~~~~-----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
+..|+..++++++.++. .. + . ++.. .++++.++..++....|+|.+.+.+....+|.+||+|++
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i 233 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH
Confidence 98887666555533321 11 1 0 1110 123455667888899999999999999999998778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQ 333 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~ 333 (383)
||++..+...+.++|++..++..+..|.++. .++|.. .+...+.+....+++++.+++..++.++..++-+..+..+
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988888888888652 235643 3444555666778899999999999999988877665554
Q ss_pred hcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 334 LKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
=++. ..| +.+++ ++|+|.|..+.+++.
T Consensus 314 a~~g----------~lP-~~~~~---~~~~g~P~~al~~~~ 340 (461)
T PRK10746 314 AKNR----------QLP-AAMAK---VSRHGVPVAGVAVSI 340 (461)
T ss_pred HhCC----------CcC-HHHHH---hCCCCCcHHHHHHHH
Confidence 3322 234 34555 678899998887654
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=99.92 E-value=2.5e-22 Score=204.61 Aligned_cols=312 Identities=13% Similarity=0.095 Sum_probs=229.7
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..||+++.++..++.+|.+||+|++.+|.. ++.+|. .+++..++++++.+..+..++|++.++|..
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~a------------ 91 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSS------------ 91 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------
Confidence 357889999999999999999999999874 566775 567778888899999999999999999975
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhh--h-CCchhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL--L-NIPESVSGFLFTTVFTLLISIGGTRATDQFN 189 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~--~-~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~ 189 (383)
.+.+.++++.+|++.+++.+|.+++.......+...+.+.++..+ + +.|.+....++.+++..++. .|+|...+++
T Consensus 92 Gg~y~y~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~-~gvk~~~~i~ 170 (499)
T PRK15049 92 GSFVSYAREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM-IGVKWFAEME 170 (499)
T ss_pred CCHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 489999999999999999999998764433333333444554433 2 25556556666666677775 6999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hcC-CC--C---C---CC-----CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCCh
Q 042761 190 QWLTASMIGLLVAIEVIAVV--VGG-WS--G---L---DG-----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDL 253 (383)
Q Consensus 190 ~~~~~~~i~~l~~iiv~~~~--~~~-~~--~---~---~~-----~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~ 253 (383)
.+++.+|++.++.+++.++. ..+ .. + + .. ++++.+.+.++...+|+|.+.+.+..+.+|.++++
T Consensus 171 ~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~ 250 (499)
T PRK15049 171 FWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh
Confidence 99998887766665543322 111 10 0 0 00 11222233445568899999999999999997777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042761 254 PRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFF 330 (383)
Q Consensus 254 k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l 330 (383)
|++||++..+...+.++|+...++....+|.++. ..+|.. .+...+.++...+++++.+++.+++.++..++.+..+
T Consensus 251 r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 251 TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999988888888887652 236753 3444566778889999999999999999998887666
Q ss_pred HHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 331 KEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
.++=++. ..| +.+++ ++|+|+|..+.+++
T Consensus 331 ~a~Ardg----------~lP-~~f~k---v~k~~~P~~Ail~~ 359 (499)
T PRK15049 331 RSMAMGG----------SAP-SFMAK---MSRQHVPYAGILAT 359 (499)
T ss_pred HHHHhcC----------CcC-HHHHH---hCCCCCCHHHHHHH
Confidence 5543322 234 44555 67889998777543
No 18
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.92 E-value=2.5e-22 Score=202.03 Aligned_cols=314 Identities=15% Similarity=0.127 Sum_probs=222.2
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
+.+|+++.++++++.+|++||+|++.+|...+..|. ..+...+++++.....++.++|++.++|+. .
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~a------------G 71 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSP------------G 71 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------C
Confidence 467889999999999999999999999988777664 455667777778888999999999999975 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC-c-hh---HHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI-P-ES---VSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-~-~~---~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
+.+.++++.+||..+++.++.+++.......+......++...+++. + ++ ...+.+.++++.++. .|+|...++
T Consensus 72 G~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~-~gvk~~~~i 150 (445)
T PRK10644 72 GSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNI-VGPKMITRV 150 (445)
T ss_pred ChhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHH-hchHHHHHH
Confidence 78888999999999999999988766555555554555565555432 1 11 122333344566665 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCC---CcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHH
Q 042761 189 NQWLTASMIGLLVAIEVIAVVVGGWSGLD---GSG---NWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLL 262 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~~~~~~~~~---~~~---~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~ 262 (383)
|++.+..+++.++++++.+....+.++.. .+. ++.++..++...+|+|.+.+....+.+|+|+++|++||++..
T Consensus 151 ~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~ 230 (445)
T PRK10644 151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHH
Confidence 99999888776665554343322222111 111 223444566778999999999999999998777899999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 042761 263 GSLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSW 339 (383)
Q Consensus 263 ~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~ 339 (383)
+..++.++|++...+..+..|.++. .++|... +.+..+++...++.+...++..++..+...+.+..+..+- +
T Consensus 231 s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~a-r--- 306 (445)
T PRK10644 231 GVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA-D--- 306 (445)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h---
Confidence 9999999999999999998887652 2456543 3333445566667777777777777777666554433222 1
Q ss_pred CCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 340 NSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
++..| +.+++ ++|+|.|..+.+++.+
T Consensus 307 ------dg~lP-~~~~~---v~~~~tP~~Ai~~~~~ 332 (445)
T PRK10644 307 ------DGLFP-PIFAR---VNKAGTPVAGLLIVGV 332 (445)
T ss_pred ------CCCcc-HHHHh---hCcCCCCHHHHHHHHH
Confidence 22345 45556 5567899877765543
No 19
>PTZ00206 amino acid transporter; Provisional
Probab=99.92 E-value=1.6e-22 Score=204.00 Aligned_cols=283 Identities=16% Similarity=0.209 Sum_probs=198.3
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
-++.+..+++++++++++|+|+|++|+++++.||+.|++++++.+.++.++...+.++..+.+. .+|
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~-------------~sY 123 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI-------------RTY 123 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-------------CCH
Confidence 3457889999999999999999999999999999999999999999999999999887654221 599
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC---Cchh---------HHHHHHHHHHHHHHHhcchh
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN---IPES---------VSGFLFTTVFTLLISIGGTR 183 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---l~~~---------~~~ii~~l~~~~~~~~~g~k 183 (383)
+|++++.+||+++++.+++..+++++.+++|++..||.++..+. .+.. ...++..++..++.+.+.++
T Consensus 124 ~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~ 203 (467)
T PTZ00206 124 EGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHID 203 (467)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchH
Confidence 99999999999999999999999999999999999999988763 1111 11222223334455444555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC---C---CC-C------CcCcchhhhHHHHHHHhhhccHHHHHHHh
Q 042761 184 ATDQFNQWLTASMIGLLVAIEVIAVVVGGW-SGL---D---GS-G------NWGKVPATIPVIIFSLVYHDLAPVLCAYL 249 (383)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~-~~~---~---~~-~------~~~~~~~a~~i~~fsf~~~~~ip~l~~~~ 249 (383)
.+++++.+.....+...+.++ ......+. +.. . .+ . .....+.+++++.|||.||.++|+++++|
T Consensus 204 ~L~~~S~i~~~~i~~~vi~iv-i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M 282 (467)
T PTZ00206 204 SLRYVSTIAVSFMVYLVIVIV-VHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM 282 (467)
T ss_pred HHHHHHHHHHHHHHHHHhhhh-hhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh
Confidence 555554443322222111111 11111111 110 0 00 0 11246778999999999999999999999
Q ss_pred cC-ChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCHH-HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042761 250 GG-DLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPV-ELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFS 327 (383)
Q Consensus 250 ~~-~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl-~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~ 327 (383)
++ .++|+.+++..++.++.++|.++.+ .|++.+.++.++.+ ....... .....+..+...+.++.||+-...+.+
T Consensus 283 ~~~t~~~~~~v~~~s~~i~~~lY~~~G~--~GYl~fG~~v~~~Illn~~p~~-~~~~~v~~~~~~~~v~~sypL~~~p~r 359 (467)
T PTZ00206 283 TNRSVGKFVLASTIAMGMCFTMYVLTAF--FGYMDFGRNVTGSVLLMYDPVN-EPAIMVGFVGVLVKLFVSYALLGMACR 359 (467)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHH--hhhhccccccchHHHHhCCCCC-CchhhHHHHHHHHHHHHhhhhhhhhHH
Confidence 63 3678999999999999999988744 77777665543322 1111011 122234445556678899999999999
Q ss_pred HHHHHhhc
Q 042761 328 EFFKEQLK 335 (383)
Q Consensus 328 ~~l~~~~~ 335 (383)
|.+.+.+.
T Consensus 360 ~~i~~~~~ 367 (467)
T PTZ00206 360 NALYDVIG 367 (467)
T ss_pred HHHHHHhC
Confidence 98888763
No 20
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.91 E-value=3.5e-22 Score=201.54 Aligned_cols=314 Identities=14% Similarity=0.089 Sum_probs=235.4
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..||+++.++..++.+|++||+|+|.+|.. .+.+|. ..++..++++++.+..++.++|++.++|..
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~a------------ 75 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVA------------ 75 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Confidence 457899999999999999999999999986 456664 566778888899999999999999999975
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.++++++++.+||..+++.+|.+++.......+...+.+++++.+++ .+.+....++.+++..++. .|.|..+++|.+
T Consensus 76 Gg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~-~gv~~~~~~~~~ 154 (456)
T PRK10238 76 GSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINL-TNVKVFGEMEFW 154 (456)
T ss_pred CCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHH
Confidence 48999999999999999999999988777777777778888877663 4556566666666666775 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hcC-CC------CCCC-----CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHH
Q 042761 192 LTASMIGLLVAIEVIAVV--VGG-WS------GLDG-----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLR 257 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~~--~~~-~~------~~~~-----~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~ 257 (383)
++..+++.+++++++++. ..+ .+ +... ++++.++..++....|+|.+.+......+|++|++|++|
T Consensus 155 ~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iP 234 (456)
T PRK10238 155 FAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIP 234 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHH
Confidence 999988766555433321 111 11 1001 222334556677789999999999999999977778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 258 ASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 258 ~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
|++..+.....++|+.......+..|.++. .++|... +...+.++...+++.+.+++.+++.++...+.+..+..+=
T Consensus 235 rAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~a 314 (456)
T PRK10238 235 KATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLA 314 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888889998876666777776542 2457543 3444556677888888899999999998888776654433
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 335 KSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
++ +..| +.+++ ++|+|.|..+.+++.+
T Consensus 315 rd----------g~lP-~~f~k---v~~~~~P~~Ail~~~~ 341 (456)
T PRK10238 315 QQ----------GNAP-KALAS---VDKRGVPVNTILVSAL 341 (456)
T ss_pred hC----------CCcc-HHHHh---hCcCCCcHHHHHHHHH
Confidence 22 2344 44555 6678999988876543
No 21
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.91 E-value=5.7e-22 Score=199.90 Aligned_cols=313 Identities=17% Similarity=0.168 Sum_probs=234.0
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQ-KASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~-a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..+|+++.++..++.+|++||+|++.+|. .++.+|. .+++..++++++....+++++|++.++|+.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~------------ 75 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDT------------ 75 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------
Confidence 35788999999999999999999999996 4667775 567788888899899999999999999875
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.+.++++++.+||..+++.+|.+++.......+.....+++++.+++ .+.+...+++.+++..++. .|+|..++++.+
T Consensus 76 Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~-~gv~~~~~~~~~ 154 (452)
T TIGR01773 76 GSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTNL-YSVKSYGEFEFW 154 (452)
T ss_pred CCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHH-HhcchhhHHHHH
Confidence 47899999999999999999999987766666776777777777664 4445555555555666675 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHh--hc---CC-----CCCC-----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 192 LTASMIGLLVAIEVIAVV--VG---GW-----SGLD-----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~~--~~---~~-----~~~~-----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
.+..|++.++.+++.+.. .. .. ++.. .++++.++..++....++|.+.+....+.+|+++++|++
T Consensus 155 ~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~i 234 (452)
T TIGR01773 155 FALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSI 234 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHH
Confidence 998887766555433321 11 10 1111 122334567778889999999999999999997777899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccc-cc-c-CHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQAD-QV-I-DPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~-~-~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
||++..+.....++|++..+...+..|.++ +. + .|... ....+.++...+++.+.++++.++.++...+.+..+..
T Consensus 235 PrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a 314 (452)
T TIGR01773 235 TRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYS 314 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888889999998777788777543 22 2 25433 33345566777888888999999999988887755544
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+-++. ..| +.+++ ++|+|+|..+.+++.
T Consensus 315 ~ardg----------~lP-~~~~~---v~~~~~P~~Ail~~~ 342 (452)
T TIGR01773 315 LAERG----------DAP-RVFMK---LNKKGVPVQAVLAST 342 (452)
T ss_pred HHhCC----------CcC-HHHHh---hCCCCCcHHHHHHHH
Confidence 33322 234 44555 667899998876653
No 22
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.91 E-value=1.3e-21 Score=197.48 Aligned_cols=312 Identities=13% Similarity=0.136 Sum_probs=228.9
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..+|+++.++..++.+|++||+|++.+|.. .+.+|. ..++..++++++....++.++|+..++|..
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~------------ 72 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAA------------ 72 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------
Confidence 356889999999999999999999999986 456664 567778889999999999999999999975
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.+.++++++.+||..+++.+|.+++.......+...+.+.+++.+++ .|.+...+.+.++++.++. .|.|...+++.+
T Consensus 73 Gg~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~-~gv~~~~~~~~~ 151 (457)
T PRK10580 73 SSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNL-MSVKVFGELEFW 151 (457)
T ss_pred CCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHH-ccchhHHHHHHH
Confidence 47889999999999999999999876555445555667777766653 4555555555556666775 699999999999
Q ss_pred HHHHHHHHHHHHHHHHH--hhc---C---CCC----CC----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 192 LTASMIGLLVAIEVIAV--VVG---G---WSG----LD----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~--~~~---~---~~~----~~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
++..+++.++++++.+. ... + ..+ .+ .+.++.++..++...+|+|.+.+......+|.++++|+
T Consensus 152 ~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~ 231 (457)
T PRK10580 152 FSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKS 231 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhH
Confidence 99888776655543321 111 1 011 01 12223355667778899999999999999999877788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
+||++..+...+.++|+...++..+..|.++- ..+|... ....+.++...++++..+++.+++.++...+.+..+..
T Consensus 232 iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~ 311 (457)
T PRK10580 232 IPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHG 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888899999988888777776542 2356433 33345566777888888888888888877777755544
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
+-++ +..| +.+++ ++|+|.|..+.+++
T Consensus 312 ~ard----------g~lP-~~~~k---v~~~~~P~~Ai~~~ 338 (457)
T PRK10580 312 MAEQ----------GSAP-KIFSK---TSRRGIPWVTVLVM 338 (457)
T ss_pred HHhC----------CCcC-HHHHh---hCCCCCcHHHHHHH
Confidence 3322 2344 44555 67789999887655
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.91 E-value=3.7e-22 Score=202.30 Aligned_cols=311 Identities=19% Similarity=0.177 Sum_probs=226.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIF-PSSLSLIVCWGFLLIEALILIEINVSLRR-GKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~-~~~~~lll~~~~~~~~~~~l~e~~~~~~~-~~~~~~~~~~~~~ 112 (383)
++|+++.++++++.+|++||+|++.+|....+.|-. ..++..+++++.....++.++|++.++|+ .
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~s------------ 72 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELD------------ 72 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC------------
Confidence 367899999999999999999999999986654432 33566778888888899999999999998 4
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC----Cch---hHHHHHHHHHHHHHHHhcchhhH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN----IPE---SVSGFLFTTVFTLLISIGGTRAT 185 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~----l~~---~~~~ii~~l~~~~~~~~~g~k~~ 185 (383)
.+.++++++.+||+.+++.+|.+++.......++.....+++..+++ .+. ....+.+.+++..+++ .|+|..
T Consensus 73 GG~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~-~Gi~~~ 151 (473)
T TIGR00905 73 GGIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVL-RGVRQA 151 (473)
T ss_pred CChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHH-hCHHHH
Confidence 47888999999999999999999876555555665555566665543 111 2233344444556675 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-----C--CC---CCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 186 DQFNQWLTASMIGLLVAIEVIAVVVGGWSGL-----D--GS---GNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 186 ~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~-----~--~~---~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
.+++.+.+..+++.++.+++.+....+.++. + .+ +.+..+..++...+++|.+.+....+.+|+|| +|+
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-ccc
Confidence 9999999988887666665444332222211 0 01 12334555677789999999999999999977 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCH-HHHH-hhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDP-VELL-MRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFK 331 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~p-l~~l-~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~ 331 (383)
+||++..+..++.++|++...+..+..|.++ +.++| ...+ ....+++...++.+..+++..++..+...+.+..+.
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998899888765 33567 4443 334456677788888888999999998888876655
Q ss_pred HhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 332 EQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
.+-++ +..| +.+++ ++|+|.|..+.++.
T Consensus 311 amard----------g~lP-~~~~~---v~~~~tP~~Ai~~~ 338 (473)
T TIGR00905 311 SAAKD----------GLFP-KIFGR---VNKNGAPSVALLLT 338 (473)
T ss_pred HHHhC----------CChh-HHHHh---hCccCCCHHHHHHH
Confidence 44322 2344 44555 55668998776653
No 24
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.91 E-value=7.5e-22 Score=199.81 Aligned_cols=310 Identities=16% Similarity=0.155 Sum_probs=224.8
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKAS-PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~-~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
|+++.++++++.+|++||+|++.+|.... .+|....++..+++++.....+++++|++.++|+.+ .+.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~g-----------GG~ 69 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELD-----------GGV 69 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-----------CCh
Confidence 57899999999999999999999998754 556433455677888888889999999999998742 278
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-C----ch--hHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-I----PE--SVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l----~~--~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
++++++.+||+.+++.+|.+++.......++......++..+++ . +. ......+..++..+++ .|+|...++
T Consensus 70 y~y~~~~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~-~Gv~~~~~i 148 (468)
T TIGR03810 70 YSYAKAGFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVL-RGVEGAAFI 148 (468)
T ss_pred hhhHHhHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 89999999999999999999987666666666555555555442 1 11 1222333334455665 699999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCC-----C-C--CCCc----CcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 189 NQWLTASMIGLLVAIEVIAVVVGGWSGL-----D-G--SGNW----GKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~~~~~~~~-----~-~--~~~~----~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
|.+.+..|++.++.+++.+....+.+.. . . ...+ .++..++...+|+|.+.+....+.+|.| |+|++
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k-~~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE-KRSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc-Ccccc
Confidence 9999999987776666544332221111 0 0 0112 2344566778999999998887778874 68899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCH-HH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDP-VE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~p-l~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
||++..+..++.++|++.+.+..|..|.++ +.++| .. .+....+++...++++..+++..++.++..++.++.+..
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988765 33455 33 333445677888999999999999999999988866654
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
+=++. ..| +.+++ ++|+|.|..+.+++
T Consensus 308 ~ardg----------~lP-~~f~k---~~~~~tP~~al~~~ 334 (468)
T TIGR03810 308 MAKDK----------LMP-KYFGK---ENANGAPTNALWLT 334 (468)
T ss_pred HHhCC----------Ccc-HHHHh---hCCCCCCHHHHHHH
Confidence 43322 244 45666 66789998776653
No 25
>TIGR00909 2A0306 amino acid transporter.
Probab=99.91 E-value=6.5e-22 Score=198.08 Aligned_cols=310 Identities=15% Similarity=0.180 Sum_probs=232.6
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHHhc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQKAS-PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a~~-~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
+|+++.++.+++.+++++|+|++.+|.... ..|. ..++..++++++....++.+.|++.++|+. .+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~------------Gg 68 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVA------------GS 68 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------Cc
Confidence 588999999999999999999999997644 4454 455667777888888999999999998874 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-----CchhH------------HHHHHHHHHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-----IPESV------------SGFLFTTVFTLLI 177 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----l~~~~------------~~ii~~l~~~~~~ 177 (383)
.++++++.+||+.+++.++.+++.......++....++++..+++ .|.+. ..+.+.++++.++
T Consensus 69 ~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 148 (429)
T TIGR00909 69 PYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYIL 148 (429)
T ss_pred ceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHH
Confidence 789999999999999999999887777777777777888776653 23221 2244555556667
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC--CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 178 SIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGLD--GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 178 ~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~~--~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
+ .|.|..++++.+++..+++.++++++.+....+.++.. .+.++.++..++...+++|.+.+....+.+|+++++|+
T Consensus 149 ~-~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ 227 (429)
T TIGR00909 149 Y-LGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERD 227 (429)
T ss_pred H-hCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCcccc
Confidence 5 79999999999999988876665544333322222221 23345566777888999999999999999999877789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCHHHHH-hhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDPVELL-MRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~l-~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
+||++..+..++.++|+++..+..+..|.++ +.++|+... .+..+++...++.+..+++..++..+...+.+..+..
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~ 307 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA 307 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888888764 223565433 3345677888899999999999999999998877766
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccc-cCcchheeeeee
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWG-RNKISFTAMAMV 373 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~l~ 373 (383)
.-++.. .| +.+++ ++ |+|.|..+.++.
T Consensus 308 ~a~dg~----------lP-~~~~~---~~~~~~~P~~a~~~~ 335 (429)
T TIGR00909 308 MSRDGL----------LP-GSLSK---VHPKTGTPHMSIIIF 335 (429)
T ss_pred HHcCCC----------Cc-HHHHH---cCCCCCCcHHHHHHH
Confidence 554333 33 23444 33 668888765543
No 26
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.90 E-value=3e-21 Score=195.50 Aligned_cols=312 Identities=14% Similarity=0.124 Sum_probs=230.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQ-KASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~-a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.+|+++.+++.++.+|++||+|++.+|. +++.+|. ..++..++++++....+..++|+....+.. .
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~------------~ 84 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEY------------K 84 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------------C
Confidence 5789999999999999999999999887 5667776 456677788888888899999998755543 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
+..+++++.+||..+++.+|.+++.......+++.+.+.+++.+++ .+.+....++.+++..+++ .|.|..+++|.+.
T Consensus 85 ~~~~ya~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~-~g~~~~~~i~~~~ 163 (469)
T PRK11049 85 SFSDFASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNL-ATVKMFGEMEFWF 163 (469)
T ss_pred cHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 7889999999999999999999876655555666667777776654 3444444555555566775 6999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh--c---CCC----CC----C----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 193 TASMIGLLVAIEVIAVVV--G---GWS----GL----D----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~~--~---~~~----~~----~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
+..|++.++.+++.+... . +.+ .. + .|+++.++..++...+|+|.+.+.++.+.+|+++++|+
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 243 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKS 243 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhH
Confidence 998877766665444321 1 011 01 0 12334457788888999999999999999999877789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccc--ccCHHH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQADQ--VIDPVE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~--~~~pl~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
+||++..+...+.++|++...+..+..|.++. .++|.. .+...+.++...++++..+++..++..+...+.+..+..
T Consensus 244 iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a 323 (469)
T PRK11049 244 LPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFG 323 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999877888899999888887777776542 235643 333345566778888888899999999988887766655
Q ss_pred hhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 333 QLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+-++. ..| +.+++ ++|+|.|+.+.++..
T Consensus 324 ~ardg----------~lP-~~~~k---v~~~~tP~~Ai~~~~ 351 (469)
T PRK11049 324 LAQEG----------VAP-KAFAK---LSKRAVPAKGLTFSC 351 (469)
T ss_pred HHhCC----------CCC-HHHHh---hCCCCCCHHHHHHHH
Confidence 44322 234 34555 567799998876643
No 27
>PRK10836 lysine transporter; Provisional
Probab=99.90 E-value=3.4e-21 Score=196.00 Aligned_cols=313 Identities=16% Similarity=0.125 Sum_probs=222.8
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..+|+++.++++++.+|++||+|++.+|.. .+.+|....++..++++++.+..+++++|++.++|+.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~s------------ 79 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVS------------ 79 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC------------
Confidence 357889999999999999999999999974 5677764457778889999999999999999999985
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH-HHhHhHhHhhh-CCchhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYC-SKSGEILYHLL-NIPESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~-~~~g~~l~~~~-~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
.+.+.++++++|+..+++.+|.+++. +....+.. .+...+++.++ +.+.+.....+.+++..+++ .|+|..+++|.
T Consensus 80 Gg~y~y~~~~~g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~-~gv~~~~~~~~ 157 (489)
T PRK10836 80 GSFATYGQNYVEEGFGFALGWNYWYN-WAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNY-ISVRGFGEAEY 157 (489)
T ss_pred CCHHHHHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHH-HcchhhhhhHH
Confidence 48899999999999999999998864 43333332 23333344443 23444444445555566675 69999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh--c---CCC-----CCCC-----CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh
Q 042761 191 WLTASMIGLLVAIEVIAVVV--G---GWS-----GLDG-----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR 255 (383)
Q Consensus 191 ~~~~~~i~~l~~iiv~~~~~--~---~~~-----~~~~-----~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~ 255 (383)
+++..|+..++.++++++.. . +.+ +... ++++.++..+.....|+|.+.+.+..+.+|.++++|+
T Consensus 158 ~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 237 (489)
T PRK10836 158 WFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKN 237 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHH
Confidence 99998877665554333221 1 111 1110 1122233444455679999999999999999877789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccc-c---------ccCHHH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQAD-Q---------VIDPVE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLL 324 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~---------~~~pl~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~ 324 (383)
+||++..+...+.++|++...+..+..|.++ + ..+|.. .+...+.++...+++++.+++++++.++..+
T Consensus 238 iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~ 317 (489)
T PRK10836 238 IPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMY 317 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888887543 1 124543 2333444566788899999999999999888
Q ss_pred hHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 325 GFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 325 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+.+..+..+=++. ..| +.+++ ++|+|+|..+.+++.
T Consensus 318 ~~sR~l~a~Ardg----------~lP-~~~~k---v~~~~~P~~All~~~ 353 (489)
T PRK10836 318 ASTRMLYTLACDG----------KAP-RIFAK---LSRGGVPRNALYATT 353 (489)
T ss_pred HHHHHHHHHHcCC----------CcC-HHHHh---hCCCCCcHHHHHHHH
Confidence 8886655433222 234 44555 667899988766543
No 28
>PRK11021 putative transporter; Provisional
Probab=99.89 E-value=5.1e-21 Score=190.64 Aligned_cols=304 Identities=14% Similarity=0.172 Sum_probs=212.3
Q ss_pred ccHHHHHHHHHhhhhhhhhhhhHHHh-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHH
Q 042761 39 GTIAGAVALIIGTSIGSGILALPQKA-SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRT 117 (383)
Q Consensus 39 ~s~~~~~~~iigtiIGaGIL~LP~a~-~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
.+.++++.+.+|++||+|++.+|... +.+|. .+++..++++++....++.++|++.++|+. .+.+.
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~a------------GG~y~ 67 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHA------------GGPAH 67 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHHH
Confidence 36889999999999999999999864 45664 567778888899999999999999999975 47889
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCch---hHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 042761 118 MAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPE---SVSGFLFTTVFTLLISIGGTRATDQFNQWLTA 194 (383)
Q Consensus 118 ~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~---~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~ 194 (383)
++++.+||..+++.+|.++........+......+++...++.+. ....+.+.+++..++. .|.|..++++.+.+.
T Consensus 68 y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~-~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 68 FVGMAFGPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNL-RGASSSANLQTVIAL 146 (410)
T ss_pred hHHHHhCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH
Confidence 999999999999999998864433333333444556666555332 2233444445566665 799999999988765
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCC--C--CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHH
Q 042761 195 SMIGLLVAIEVIAVVVGGW--SGL--D--GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPL 268 (383)
Q Consensus 195 ~~i~~l~~iiv~~~~~~~~--~~~--~--~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~ 268 (383)
.++..+..+ ...++. .+. . .+.+|.++..++...+|+|.+.+.+..+.+|+|||+|++||++..+..++.
T Consensus 147 ~~~~i~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~ 222 (410)
T PRK11021 147 LIVALVVAI----WWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAG 222 (410)
T ss_pred HHHHHHHHH----HHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHH
Confidence 443322211 111221 111 1 234566777888889999999999999999998778899999999999999
Q ss_pred HHHHHHHHHHhccCCcccc--ccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCC
Q 042761 269 LSLLVWDAISLGLSAQADQ--VIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTK 345 (383)
Q Consensus 269 ~~Yi~~~~~~~g~~~~~~~--~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~ 345 (383)
++|++...+..+..|.++. .++|... +....+++...++.+..+++.+++.++...+.++.+..+=++
T Consensus 223 ~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ard--------- 293 (410)
T PRK11021 223 LVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQARE--------- 293 (410)
T ss_pred HHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------
Confidence 9999988877766654432 2244332 333223334456677777888888887777776555443322
Q ss_pred CCCCcccccccccccccCcchheeeeeec
Q 042761 346 TSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 346 ~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+..| +.+++ ++|+|.|..+.+++.
T Consensus 294 -g~lP-~~~~k---~~~~~tP~~ail~~~ 317 (410)
T PRK11021 294 -GRPP-SYLAR---LSARGVPVNALNAVL 317 (410)
T ss_pred -CCcc-HHHHh---hccCCCcHHHHHHHH
Confidence 2345 45555 567799988776643
No 29
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.89 E-value=1.2e-20 Score=191.68 Aligned_cols=313 Identities=12% Similarity=0.087 Sum_probs=226.3
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
||+++.++..++.+|++||+|++..|.. .+.+|....++..++++++....++.++|++.++|+.+ .+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~g-----------G~ 69 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS-----------GS 69 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC-----------CC
Confidence 4789999999999999999999988764 56677533466688888888999999999999999542 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
|+.++++.+|+..+++.+|.+++.......+.....+.++..+.+ .+......++.+++..+++ .|+|..++++.+.+
T Consensus 70 ~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 70 FATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINL-FGVKGYGEAEFWFS 148 (478)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHH
Confidence 999999999999999999999887666666777677777765542 3444444444455566675 69999999999998
Q ss_pred HHHHHHHHHHHHHHHh--hcCCCC--------CCCCCC---------cCcchhhhHHHHHHHhhhccHHHHHHHhcCChh
Q 042761 194 ASMIGLLVAIEVIAVV--VGGWSG--------LDGSGN---------WGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLP 254 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~--~~~~~~--------~~~~~~---------~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k 254 (383)
..|+..++.+++.++. ..+.++ ...+.+ +.++..++....|+|.+.+....+.+|.++++|
T Consensus 149 ~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r 228 (478)
T TIGR00913 149 SIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRK 228 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhh
Confidence 8887666555433322 111110 000111 334566677789999999999999999987788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cc----------cCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 042761 255 RLRASVLLGSLIPLLSLLVWDAISLGLSAQAD-QV----------IDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGT 322 (383)
Q Consensus 255 ~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~----------~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~ 322 (383)
++||++..+..++.++|++..++..+..|.++ +. .+|... ....+.++...++.++.+++.+++..+.
T Consensus 229 ~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~ 308 (478)
T TIGR00913 229 SIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSS 308 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998777666777543 11 145433 2334556777888888999999999998
Q ss_pred HHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 323 LLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 323 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
..+.+..+..+=++ +..| +.+++ ++|+|.|..+.++..
T Consensus 309 ~~~~sR~l~a~ard----------g~lP-~~f~k---~~~~~~P~~Ai~~~~ 346 (478)
T TIGR00913 309 LYASSRTLYALAHQ----------GLAP-KIFAY---VDRRGVPYVAVIVSS 346 (478)
T ss_pred HHHHHHHHHHHHhC----------Cccc-HHHHh---hCCCCCCHHHHHHHH
Confidence 88877555433222 2344 44555 568899998766543
No 30
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.89 E-value=1.4e-20 Score=189.15 Aligned_cols=314 Identities=16% Similarity=0.081 Sum_probs=227.6
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
.+|+++.++..++.+++++|+.....+..++..|+....+..++++++....++.++|++.++|+. .+
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~------------Gg 72 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTA------------GG 72 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------------CC
Confidence 468899999999999999984445557777888885555566777777788899999999999975 47
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
.+.++++.+||..+++.+|.+++.......++..+.++++..+++ .+.+....++.+++..+++ .|+|..++++.+.+
T Consensus 73 ~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~-~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 73 GYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINI-LGVGEAAKLEFVVT 151 (442)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH-HHHHHHHhHHHHHH
Confidence 889999999999999999999887777777788888888887774 3445555555666666775 69999999999888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCC-C---------CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761 194 ASMIGLLVAIEVIAVVVGGWSGL-D---------GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~~~~~~~~-~---------~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~ 263 (383)
..+++.+++++.......+..+. . .+.++.++..+++..+++|.+.+..+.+.+|+++++|++||++..+
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s 231 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGA 231 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHH
Confidence 87766544433211111111111 0 1112234566777889999999999999999977778999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccc--cccCHHHH-Hhhc--CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 264 SLIPLLSLLVWDAISLGLSAQAD--QVIDPVEL-LMRV--RWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 264 ~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~-l~~~--~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
..++.++|+.+..+..|..+.++ +.++|... .... +..+...++.+..++++.++..+..++.+..+..+-++.
T Consensus 232 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg- 310 (442)
T TIGR00908 232 ILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAG- 310 (442)
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 99999999988777777777543 23456543 3322 234566677777788888899998888776655443322
Q ss_pred CCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 339 WNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
..| +.+++ ++|+|+|..+.+++.+
T Consensus 311 ---------~lP-~~~~~---~~~~~~P~~Ail~~~~ 334 (442)
T TIGR00908 311 ---------YLP-ESLSK---VNRKKAPVLAIVVPGV 334 (442)
T ss_pred ---------Ccc-HHHHH---hCCCCCcHHHHHHHHH
Confidence 344 44555 5688999988876544
No 31
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.88 E-value=1.9e-20 Score=188.37 Aligned_cols=299 Identities=16% Similarity=0.201 Sum_probs=225.6
Q ss_pred HHHhhhhhhhhhhhHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhch
Q 042761 47 LIIGTSIGSGILALPQ-KASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGD 125 (383)
Q Consensus 47 ~iigtiIGaGIL~LP~-a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~ 125 (383)
+.+|++||+|++..|. +++++|. ..++..++++++....+++++|++.++|+. .+.++++++.+||
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~------------Gg~y~y~~~~~G~ 68 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDT------------GSFSTYADKAIGR 68 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------------CCHHHHHHHHcCh
Confidence 4679999999999987 5678885 577788889999999999999999999975 4899999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Q 042761 126 WGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIE 204 (383)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~ii 204 (383)
..+++.+|.+++...........+.+.+++.+++ .+.+.....+.++++.++. .|+|..+++|.+++..|++.+++++
T Consensus 69 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~-~gv~~~~~i~~~~~~~ki~~li~~i 147 (446)
T PRK10197 69 WAGYTIGWLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNL-LSVKNYGEFEFWLALCKVIAILAFI 147 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHH-HhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999987665555555555556655543 4555556666666677775 6999999999999999987776665
Q ss_pred HHHHhh-cCC------CCC----C----CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHH
Q 042761 205 VIAVVV-GGW------SGL----D----GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLL 269 (383)
Q Consensus 205 v~~~~~-~~~------~~~----~----~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~ 269 (383)
+.+... .+. .+. + .++++.++..++...+|+|.+.+.+....+|.||++|++||++..+...+.+
T Consensus 148 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i 227 (446)
T PRK10197 148 FLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISI 227 (446)
T ss_pred HHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHH
Confidence 444331 110 010 0 1234456778888899999999999999999987778999999999999999
Q ss_pred HHHHHHHHHhccCCccc-ccc--CHHH-HHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCC
Q 042761 270 SLLVWDAISLGLSAQAD-QVI--DPVE-LLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTK 345 (383)
Q Consensus 270 ~Yi~~~~~~~g~~~~~~-~~~--~pl~-~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~ 345 (383)
+|++..++..+..|.++ +.+ .+.. .++..+.++...+++++.+++..++.++..++.+..+..+=++.
T Consensus 228 ~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg-------- 299 (446)
T PRK10197 228 FYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRG-------- 299 (446)
T ss_pred HHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------
Confidence 99998888888888754 221 2322 23345667778889999999999999999988886665543322
Q ss_pred CCCCcccccccccccccCcchheeeeee
Q 042761 346 TSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 346 ~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
..| +.+++ ++|+|.|..+.+++
T Consensus 300 --~lP-~~~~~---~~~~~~P~~Ail~~ 321 (446)
T PRK10197 300 --DAP-AVMGK---INRSKTPYVAVLLS 321 (446)
T ss_pred --CcC-HHHHh---hCcCCCcHHHHHHH
Confidence 244 44555 66889999888775
No 32
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.88 E-value=2.2e-20 Score=188.04 Aligned_cols=316 Identities=13% Similarity=0.053 Sum_probs=218.7
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHh-cccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKA-SPAGIF-PSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~-~~~G~~-~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
..+|+++.+++.++.+|+++|+|++..|... +.+|.. ..++..++++++....+++++|++.++|+.
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~----------- 73 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPEN----------- 73 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------
Confidence 3578899999999999999999999999864 445643 345667788888899999999999999985
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhHhHhhhCCchh---HHHHHHHHHHHHHHHhcchhhHHH
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVF-LGYTSMIAYCSKSGEILYHLLNIPES---VSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~-~~~~~~~ay~~~~g~~l~~~~~l~~~---~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
.+.+.++++.+||..+++.+|..++ ..-.....+....++++..+++.+.. .....+.+++..++. .|+|...+
T Consensus 74 -GG~y~y~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ln~-~gv~~~~~ 151 (445)
T PRK11357 74 -GADYVYLKNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHL-RSVEGGAA 151 (445)
T ss_pred -CCceeeHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHH-hhhhHHHH
Confidence 3667789999999999999997543 22334455666777777665544322 222333344455664 69999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----CC----CCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHH
Q 042761 188 FNQWLTASMIGLLVAIEVIAVVVGGWSGLD----GS----GNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRAS 259 (383)
Q Consensus 188 ~~~~~~~~~i~~l~~iiv~~~~~~~~~~~~----~~----~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~a 259 (383)
++.+++..+++.++++++.+....+.++.. .+ .++.++..+++..+|+|.+.+....+.+|+|+++|++||+
T Consensus 152 v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~A 231 (445)
T PRK11357 152 FQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRA 231 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHH
Confidence 999999888877665554443322222111 11 1133455667788999999999999999998778899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCccc--cccCHHHHH-hhc--CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 260 VLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDPVELL-MRV--RWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 260 i~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~l-~~~--~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
+..+..++.++|++.+.+..+..|.++ +.++|+... ... .+++...++.+..++++.++..+...+-...+..+-
T Consensus 232 i~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~a 311 (445)
T PRK11357 232 LIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMA 311 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999988888888664 224565332 221 234455566667777778888887777554443332
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 335 KSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
++. ..| +.+++- +.|+|.|..+.++..+
T Consensus 312 rdg----------~lp-~~~~~v--~~~~~tP~~a~l~~~~ 339 (445)
T PRK11357 312 KDN----------LFF-KCFGHV--HPKYNTPDVSIILQGA 339 (445)
T ss_pred hcC----------Cch-HHHHHh--CCCCCCCHHHHHHHHH
Confidence 221 234 333431 3377899988776543
No 33
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.87 E-value=2.1e-19 Score=175.97 Aligned_cols=287 Identities=16% Similarity=0.181 Sum_probs=207.7
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
++.|.++.+++++++++|+|++.+|..+++.+...+++..++++++....++++.|+..++|+ .+..
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~-------------~~~~ 67 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE-------------KNFS 67 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCHH
Confidence 357889999999999999999999998665444467788889999999999999999988875 3799
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh--CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL--NIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTA 194 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~--~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~ 194 (383)
++.++.+||+.+++.++.+.++.....+......++.++..+ +.|.++..+.+.++....+. .|++...|++.++++
T Consensus 68 ~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~-~Gi~~i~r~~~i~~~ 146 (359)
T TIGR00912 68 EILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVR-KGIEVLLRTAEILLI 146 (359)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHH
Confidence 999999999999999999888777665555556777776554 45666666666666565664 799999999999988
Q ss_pred HHHHHH-HHHHHHHHhhcCCCCCC--CCCCcCcchhhhH-HHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042761 195 SMIGLL-VAIEVIAVVVGGWSGLD--GSGNWGKVPATIP-VIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270 (383)
Q Consensus 195 ~~i~~l-~~iiv~~~~~~~~~~~~--~~~~~~~~~~a~~-i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~ 270 (383)
.++..+ ..+........+.++.. .++++.+...+.. ...++|.+......+.+++ ||+||.+|+...+..++.++
T Consensus 147 ~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~-~~~~~~~k~~~~~~~~~~~l 225 (359)
T TIGR00912 147 IFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL-SKKKKIKKSIIKAIIIGVLL 225 (359)
T ss_pred HHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh-CChhhhHHHHHHHHHHHHHH
Confidence 876653 32221111112233322 2345555555543 7788898877777777777 57889999999999999999
Q ss_pred HHHHHHHHhccCCccc--cccCHH-HHHhhcC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 271 LLVWDAISLGLSAQAD--QVIDPV-ELLMRVR----WSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 271 Yi~~~~~~~g~~~~~~--~~~~pl-~~l~~~~----~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
|+.+..++++.+|.++ +...|. +...... -.....+....-+.+..+......+.....+++.++.++
T Consensus 226 y~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~ 300 (359)
T TIGR00912 226 YILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK 300 (359)
T ss_pred HHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999765 334563 2222221 123445555555566666666677777777777777664
No 34
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.87 E-value=1.8e-20 Score=185.06 Aligned_cols=313 Identities=13% Similarity=0.094 Sum_probs=251.6
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhh-hhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGIL-ALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL-~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
-||+++..+..++-+|+.||+|.| +.-.+++++|....++..++.+.+.++.+..+.|++..+|.. .
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~s------------G 109 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVS------------G 109 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------------C
Confidence 578899999999999999999976 566788999987777889999999999999999999999953 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh--CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL--NIPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~--~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
++..++.++.++-.|+..+|.||+.....+...+++.+..++.++ .+|.+.+..+|.+++..++. .++|..+..+.+
T Consensus 110 sF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~-~~Vk~fGE~Efw 188 (541)
T COG0833 110 SFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNL-FGVKGFGETEFW 188 (541)
T ss_pred chhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHH-hcccccceehHH
Confidence 799999999999999999999999998888889999999999987 35888888888888787886 699999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh--cCCCCC------------CCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHH
Q 042761 192 LTASMIGLLVAIEVIAVVV--GGWSGL------------DGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLR 257 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~~~--~~~~~~------------~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~ 257 (383)
+..+|++.++.++++++.. +..+++ ..++++.++...+-...|||.+.+.+...+.|-++|+|.+|
T Consensus 189 ~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iP 268 (541)
T COG0833 189 FSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIP 268 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhH
Confidence 9999998887777655432 211111 12344555666666677888887777665667766778899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccc-c---------ccCHH-HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 042761 258 ASVLLGSLIPLLSLLVWDAISLGLSAQAD-Q---------VIDPV-ELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGF 326 (383)
Q Consensus 258 ~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~---------~~~pl-~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l 326 (383)
||+--...-++++|++..+++-...|.++ + ..+|. -++++.+.+....++|++.+.+++++-++..++-
T Consensus 269 kAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYas 348 (541)
T COG0833 269 KAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYAS 348 (541)
T ss_pred HHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHH
Confidence 99999999999999987666666778765 1 13464 3355566777889999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 327 SEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 327 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+..+..+=++... | |.+++ .||+|.|+.+.+.+.
T Consensus 349 SR~L~sLA~~g~A----------P-k~f~~---~~r~GvP~~al~vt~ 382 (541)
T COG0833 349 SRMLYSLAKQGKA----------P-KIFAK---VDRRGVPLVALLVTL 382 (541)
T ss_pred HHHHHHHHhcCCC----------c-hHHHh---hCCCCCchHHHHHHH
Confidence 9887776655442 3 56777 999999999877653
No 35
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.85 E-value=1.2e-23 Score=208.88 Aligned_cols=284 Identities=17% Similarity=0.204 Sum_probs=206.9
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
||.|.+++.++++++++|+|+|++|+++++.|++.|++++++.+.++.++...+.++..+.++++ +..+|.
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~---------~~~~y~ 71 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGT---------GRRSYG 71 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccccc---------cccccc
Confidence 57899999999999999999999999999999999999999999999999999999987654111 126999
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC-------chhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI-------PESVSGFLFTTVFTLLISIGGTRATDQFN 189 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-------~~~~~~ii~~l~~~~~~~~~g~k~~~~~~ 189 (383)
|++++.+||+++++.++++.+.+++.+++|....++.+.++++. +.....+++.++..++.. .|..+.+.
T Consensus 72 ~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~---~~~l~~l~ 148 (409)
T PF01490_consen 72 DLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSF---LKNLKSLR 148 (409)
T ss_pred ccccccccccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccc---cchhhHHH
Confidence 99999999999999999999999999999999999999888632 223333444444344443 34444443
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhcC----CCCC--C---CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhh---H
Q 042761 190 QWLTASMIGLLVA-IEVIAVVVGG----WSGL--D---GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPR---L 256 (383)
Q Consensus 190 ~~~~~~~i~~l~~-iiv~~~~~~~----~~~~--~---~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~---~ 256 (383)
.......+..+.. .++....... ..+. . ...++.+++.+++++.|+|.+|+++|++.++|+ +|++ +
T Consensus 149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~~~~~~~~ 227 (409)
T PF01490_consen 149 YLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMK-DPSKFKKM 227 (409)
T ss_pred HHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeecc-CCcccccc
Confidence 3333332222110 0000111111 1111 1 123456789999999999999999999999995 4444 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccccccCHH-HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPV-ELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLK 335 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl-~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~ 335 (383)
.|+...++.++.++|++... .|++.+.++.++++ ..+. ..++...+.+++..+.+..+++-...+.++.+++.+.
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~--~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~ 303 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGI--FGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLF 303 (409)
T ss_pred ceeeeehhhhhhHHhhhhhh--cccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhee
Confidence 59999999999999988744 66666655554432 1121 1225677888889999999999999999999988876
Q ss_pred cc
Q 042761 336 SL 337 (383)
Q Consensus 336 ~~ 337 (383)
..
T Consensus 304 ~~ 305 (409)
T PF01490_consen 304 KR 305 (409)
T ss_pred cc
Confidence 54
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.85 E-value=4.2e-19 Score=181.29 Aligned_cols=327 Identities=15% Similarity=0.138 Sum_probs=219.2
Q ss_pred hcchhhhhhhhh--cccCCccHHHHHHHHHhhhhhhhhhhhHHH-hcccCcHH-HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042761 22 KGLIQLEEETIK--NDQEKGTIAGAVALIIGTSIGSGILALPQK-ASPAGIFP-SSLSLIVCWGFLLIEALILIEINVSL 97 (383)
Q Consensus 22 ~~~~~~~~~~~~--~~~~~~s~~~~~~~iigtiIGaGIL~LP~a-~~~~G~~~-~~~~lll~~~~~~~~~~~l~e~~~~~ 97 (383)
|+..++.+|+.. ..+|+++.+++.++.+|++||+|++..|.. .+.+|... .++..++++++....++.++|++.++
T Consensus 25 ~~~~~~~~~~~~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~ 104 (501)
T TIGR00911 25 KSVSASTVDGGEAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI 104 (501)
T ss_pred ccccccccccccccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444432 347889999999999999999999999876 45566432 23455677788888999999999999
Q ss_pred hcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHH-HHHHHHHHHhHhHhHh-hhC---Cchh---HHHHHH
Q 042761 98 RRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGY-TSMIAYCSKSGEILYH-LLN---IPES---VSGFLF 169 (383)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~-~~~~ay~~~~g~~l~~-~~~---l~~~---~~~ii~ 169 (383)
|+. .+.+.++++.+||..+++.+|..++..+ +....+....++++.+ +++ .+.+ ...+.+
T Consensus 105 P~s------------GG~y~~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~ 172 (501)
T TIGR00911 105 PKS------------GGEYNYILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLC 172 (501)
T ss_pred CCC------------CchhhhHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 875 4788999999999999999987665332 2334444555665432 231 2322 223334
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--CCCCC-------CCCCcCcchhhhHHHHHHHhhh
Q 042761 170 TTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVV-GG--WSGLD-------GSGNWGKVPATIPVIIFSLVYH 239 (383)
Q Consensus 170 ~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~-~~--~~~~~-------~~~~~~~~~~a~~i~~fsf~~~ 239 (383)
.++++.++. .|+|...+++.+++..+++.++++++.+... .+ .+..+ ...++.++..++...+|+|.+.
T Consensus 173 i~~~~~ln~-~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~ 251 (501)
T TIGR00911 173 VLLLTLVNC-LSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGW 251 (501)
T ss_pred HHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhH
Confidence 445556665 6999999999999998887666655444322 11 11110 0122335566778889999999
Q ss_pred ccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc-CHH-HHHhhcCchhHHHHHHHHHHHHHHH
Q 042761 240 DLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVI-DPV-ELLMRVRWSGVSVMVEAFSLMAVGT 317 (383)
Q Consensus 240 ~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~-~pl-~~l~~~~~~~~~~~~~~~~~~al~t 317 (383)
+....+.+|+++++|++||++..+..++.++|++.+++..+..|.++-.. ++. ..+.+...++...++.+...++.++
T Consensus 252 e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~ 331 (501)
T TIGR00911 252 NYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFG 331 (501)
T ss_pred HHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 99999999998777899999999999999999999888888887654222 222 1222211124456677777788888
Q ss_pred HHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 318 SLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 318 S~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
+.++..++.+..+..+-++. ..|+ .+++. .+|+|.|+.+.+++.
T Consensus 332 ~~~~~~~~~sR~l~a~ardg----------~lP~-~~~~v--~~~~~~P~~all~~~ 375 (501)
T TIGR00911 332 SVNGSLFSSSRLFFVGGREG----------HLPS-LLSMI--HVKRLTPLPSLLIVC 375 (501)
T ss_pred HHHHHHHHHHHHHHHHHhcC----------CccH-HHHHh--cCCCCCCHHHHHHHH
Confidence 88888888886665543322 2342 22331 346788887765543
No 37
>PLN03074 auxin influx permease; Provisional
Probab=99.85 E-value=3.1e-19 Score=179.81 Aligned_cols=292 Identities=13% Similarity=0.080 Sum_probs=196.4
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc--cc
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE--VI 113 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~--~~ 113 (383)
.++.+..++.+..+...+|.|+|+||+++++.||++|++.+++.++++.|++..+.++..+++++++++ +.+.+ ..
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~--~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKERE--KVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcC--CCchhHHHH
Confidence 445788888888999999999999999999999999999999999999999999988766555432210 00001 12
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh-CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL-NIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~-~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
+|.|+++..+||+++.+.....++++++.++.|++..++.+..+- .++.+.+.+++.++..++.++..++....++.+.
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig 200 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLG 200 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHH
Confidence 678888889999999999998999999988999988777665542 2444555566665555555444555555544332
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCC--CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042761 193 TASMIGLLVAIEVIAVVVGGWSGLD--GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~~~~~~~~~--~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~ 270 (383)
....+.....+.+......+.+..+ .+.++...+.+.+.++|+|++|.++|++.++|+ +|+++++...++...+.++
T Consensus 201 ~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~-~P~~F~~~~~l~~~~v~~~ 279 (473)
T PLN03074 201 LLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLAATLYVLTL 279 (473)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhcc-ChhcccchHHHHHHHHHHH
Confidence 2211111111111111121211111 122334556667779999999999999999994 7889999888888888888
Q ss_pred HHHHHHHHhccCCcccccc--CHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 271 LLVWDAISLGLSAQADQVI--DPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 271 Yi~~~~~~~g~~~~~~~~~--~pl~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
|+.. ++.|++...++.. +|. +...+.+......+++.+++++.++.-...++.+..++.+
T Consensus 280 y~~~--~~~gY~~fG~~~~~~s~~--l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~ 341 (473)
T PLN03074 280 TLPS--AAAVYWAFGDELLTHSNA--FSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAI 341 (473)
T ss_pred HHHH--HHeeeeeechhhhhchhH--HhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 8775 4466666655432 221 1112222235677888888888888887777777666554
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.84 E-value=1.4e-18 Score=173.80 Aligned_cols=306 Identities=20% Similarity=0.269 Sum_probs=226.5
Q ss_pred ccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCCccccccccCHHH
Q 042761 39 GTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFL-LIEALILIEINVSLRRGKRKGEEENEFEVISIRT 117 (383)
Q Consensus 39 ~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
++++++.++.+|.++|+|++..| ..+..|. .+++..++++.+. ...++.+.|++.++|++ .+.+.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~-~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~------------GG~y~ 66 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGP-SAILAWIIAALLFFLPIALSYAELSSAYPSA------------GGIYV 66 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGC-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTSS------------TTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCCc------------Ceeee
Confidence 47899999999999999999999 6666776 3666666666665 68999999998878775 48999
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC---c----hhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 118 MAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI---P----ESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 118 ~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l---~----~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
++++.+||..+++.++.+++.......++....++++.+.++. + .....+++.++.+.+++ .|.|..++++.
T Consensus 67 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~-~g~~~~~~~~~ 145 (426)
T PF13520_consen 67 WVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNL-LGIKLSGKIQN 145 (426)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHH-TTHHHHHHHHH
T ss_pred hhhhcccccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeee-chhhhhhhhhh
Confidence 9999999999999999998877777777777778887776631 1 12233444445565664 79999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHhhcCCCC---------CCCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHH
Q 042761 191 WLTASMI-GLLVAIEVIAVVVGGWSG---------LDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASV 260 (383)
Q Consensus 191 ~~~~~~i-~~l~~iiv~~~~~~~~~~---------~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai 260 (383)
+.+..++ ..++.+++.+....+.+. ...++.+..++.+++..+++|.+.+..+.+.+|++ + |++||++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k-~-k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENK-N-KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSS-S-HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhccccccccccccccc-c-hhheeec
Confidence 9998887 455555444443322111 11344666778888999999999999999988864 4 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCccc-cc-c---CHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042761 261 LLGSLIPLLSLLVWDAISLGLSAQAD-QV-I---DPVELLM-RVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 261 ~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~-~---~pl~~l~-~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~ 334 (383)
..+..++.++|++...+..+..|.++ +. + ++...+. ..++++...++.+...++...+.++...+.++.+.++-
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 99999999999999999999888765 11 1 2343333 34456888899999999999999999999887777666
Q ss_pred cccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 335 KSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
++... | +.+++ ++|+|.|+.+.++..+
T Consensus 304 ~d~~l----------P-~~~~~---~~k~~~P~~a~~~~~~ 330 (426)
T PF13520_consen 304 RDGVL----------P-KWFAK---VNKFGTPYNAIILVAV 330 (426)
T ss_dssp HTTSS----------S-GGGGT---TSSSSSCHHHHHHHHH
T ss_pred cccch----------h-hhhhh---ccccCCceeeehhhhH
Confidence 54443 3 33444 5588999888765444
No 39
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.83 E-value=2.2e-19 Score=176.62 Aligned_cols=291 Identities=14% Similarity=0.155 Sum_probs=219.1
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHh-cccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKA-SPAGIF-PSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~-~~~G~~-~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
..+||.+.+..+.+++|++||+|||..|... +.+|-. .+++..+++++++...+++++|+....|+.
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipks----------- 77 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKS----------- 77 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCC-----------
Confidence 4578999999999999999999999999864 455433 344556778899999999999999988875
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHHHHHHHH-HHHHHHhHhH-hHhhhC---Cch---hHHHHHHHHHHHHHHHhcchh
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVFLGYTSM-IAYCSKSGEI-LYHLLN---IPE---SVSGFLFTTVFTLLISIGGTR 183 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~-~ay~~~~g~~-l~~~~~---l~~---~~~~ii~~l~~~~~~~~~g~k 183 (383)
.+.+.|..+.||+..+++..|.-++..+.+. +.+...++++ ++..++ .|. +.....+..++..+++ .++|
T Consensus 78 -Ggd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~-~~V~ 155 (479)
T KOG1287|consen 78 -GGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINS-FSVK 155 (479)
T ss_pred -CcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhh-hhhh
Confidence 3677888999999999999888887777766 5677788998 666664 233 2333444445566665 6999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCCCCC------CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChh
Q 042761 184 ATDQFNQWLTASMIGLLVAIEVIAVVV---GGWSGLDG------SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLP 254 (383)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~iiv~~~~~---~~~~~~~~------~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k 254 (383)
...+++.+++..|++++.++++.++.. .+.++... ..+..++..++-...|+|++-..+-.+.+|++||+|
T Consensus 156 ~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~k 235 (479)
T KOG1287|consen 156 WATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRR 235 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccc
Confidence 999999999999998888777555432 12222211 122334556667788999999998888999988889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCH-HH-HHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042761 255 RLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDP-VE-LLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFK 331 (383)
Q Consensus 255 ~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~p-l~-~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~ 331 (383)
++|||+.+++.+++++|++.+++-++.++.+|...++ +. .+++ ..+.+. +.+.+...+..+.++++...+-+..+.
T Consensus 236 tLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~ 314 (479)
T KOG1287|consen 236 TLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFY 314 (479)
T ss_pred cchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 9999999999999999999999999999987744333 22 2333 444443 788888888899999998888887766
Q ss_pred HhhcccC
Q 042761 332 EQLKSLS 338 (383)
Q Consensus 332 ~~~~~~~ 338 (383)
..-.+.+
T Consensus 315 ~~areG~ 321 (479)
T KOG1287|consen 315 AGAREGH 321 (479)
T ss_pred HHHHccC
Confidence 6554444
No 40
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.82 E-value=3.6e-19 Score=173.79 Aligned_cols=288 Identities=16% Similarity=0.143 Sum_probs=210.9
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
++..|..+...++...++|+|+|++|.+++.+|++.|.+..++.++++.+++..++++..++.+++++. ..+|
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~-------~~~y 116 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGP-------SLDY 116 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-------cccH
Confidence 455789999999999999999999999999999999999999999999999999999987766543211 1344
Q ss_pred HHHH----------HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC------CchhHHHHHHHHHHHHHHHh
Q 042761 116 RTMA----------QETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN------IPESVSGFLFTTVFTLLISI 179 (383)
Q Consensus 116 ~~~a----------~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------l~~~~~~ii~~l~~~~~~~~ 179 (383)
.+.+ .+.+|++++.+++.+.++..+|.|.+|.+-.++.++++++ .+.++...+....+.+++.+
T Consensus 117 ~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 117 AETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred HHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 4444 4567889999999999999999999999999999999885 22334444444444444433
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCCCCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 180 GGTRATDQFNQWLTASMIGLLVAIEVIAVVVGG---WSGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 180 ~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~---~~~~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
..+|...-++-+.-+.+++.++++. .....+ .+..+...+|.+.+..+++.+|||.++.++-.+.++| |+|+++
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~ii~--~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M-k~P~~F 273 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLAIIM--YYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM-KKPQKF 273 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHHHHH--HHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcc-cChhhc
Confidence 3334333333333333333333221 112222 2223344567888999999999999999988889999 588898
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHhccCCccccccCHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 042761 257 R---ASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQ 333 (383)
Q Consensus 257 ~---~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~ 333 (383)
+ +++..++.+++++|+...+ +|++.+.+++.+-+++ ..+..|....+.++..+++.-|++--.+...|.+.+-
T Consensus 274 ~g~~gVLn~~M~~V~~ly~~~Gf--~GYl~fG~~v~~sITL--NLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~ 349 (449)
T KOG1304|consen 274 PGPFGVLNLGMGIVTLLYIFLGF--FGYLAFGDDVKGSITL--NLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG 349 (449)
T ss_pred CCccchHHHHHHHHHHHHHHHHH--HHHhhccccccceEEe--cCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence 8 9999999999999988754 8888777655432211 1223678889999999999999999888888888766
Q ss_pred hccc
Q 042761 334 LKSL 337 (383)
Q Consensus 334 ~~~~ 337 (383)
+.++
T Consensus 350 i~~k 353 (449)
T KOG1304|consen 350 IRKK 353 (449)
T ss_pred HHHh
Confidence 5444
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.81 E-value=7.7e-18 Score=181.55 Aligned_cols=317 Identities=16% Similarity=0.100 Sum_probs=223.8
Q ss_pred ccCCccHHHHHHHH-HhhhhhhhhhhhH-HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCcccccc
Q 042761 35 DQEKGTIAGAVALI-IGTSIGSGILALP-QKASPAGIFPSSLSLIVCWGFLLIEALILIEINVS-LRRGKRKGEEENEFE 111 (383)
Q Consensus 35 ~~~~~s~~~~~~~i-igtiIGaGIL~LP-~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~-~~~~~~~~~~~~~~~ 111 (383)
..++.+++..+++- +++|+|+|+|.-| ...+++|...++++++++++++.++++.++|++.+ .++.
T Consensus 74 ~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~a----------- 142 (953)
T TIGR00930 74 GAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKG----------- 142 (953)
T ss_pred CCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-----------
Confidence 35678888888888 9999999998655 56779997777888899999999999999999976 6654
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC-----------chhHHHHHHHHHHHHHHHhc
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI-----------PESVSGFLFTTVFTLLISIG 180 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-----------~~~~~~ii~~l~~~~~~~~~ 180 (383)
.+-+.|.++.||+..|+..++++++.....++.|+.++++++..+++. +..+...++.++++.+++ .
T Consensus 143 -GG~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~-~ 220 (953)
T TIGR00930 143 -GGAYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISF-A 220 (953)
T ss_pred -cHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHH-h
Confidence 477888999999999999999998877777788999999999887631 113344455555566675 7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC------C-----CC------CCCCcCcchhhhHHHHHHHhhhccHH
Q 042761 181 GTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWS------G-----LD------GSGNWGKVPATIPVIIFSLVYHDLAP 243 (383)
Q Consensus 181 g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~------~-----~~------~~~~~~~~~~a~~i~~fsf~~~~~ip 243 (383)
|+|...+++.+++.++++.++.+++.++...... . +. .+....+++..+++++.+|.+.....
T Consensus 221 Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~aga 300 (953)
T TIGR00930 221 GMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGA 300 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776666543222111000 0 00 01111235667777888999888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc--cccCHH-H----------------------HHh-h
Q 042761 244 VLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD--QVIDPV-E----------------------LLM-R 297 (383)
Q Consensus 244 ~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl-~----------------------~l~-~ 297 (383)
.+..|+++++|++||+++.+.+++.++|++..+++.+..+.+. ...+.+ . ... .
T Consensus 301 n~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~ 380 (953)
T TIGR00930 301 NISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVM 380 (953)
T ss_pred HHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHH
Confidence 8899997777899999999999999999998766555555322 001111 0 010 0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 298 VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 298 ~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
........++.+..+++.++|.++..++....+..+-++...+.. +.+++ ...|+|.|..+.+++.+
T Consensus 381 ~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l---------~~fak--v~~k~~tP~~Alllt~i 447 (953)
T TIGR00930 381 SLVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFL---------QFFGK--GYGKNGEPLRAYLLTAF 447 (953)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---------hhhcc--cCCCCCCcHHHHHHHHH
Confidence 111124568888889999999999999998777766554433211 22333 13467899887766543
No 42
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=1.1e-18 Score=177.37 Aligned_cols=318 Identities=17% Similarity=0.096 Sum_probs=229.6
Q ss_pred hcccCCccHHHHHHHHHhhhhhhhhhhhH-HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 33 KNDQEKGTIAGAVALIIGTSIGSGILALP-QKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 33 ~~~~~~~s~~~~~~~iigtiIGaGIL~LP-~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
...+|+++.++..++.+|++||+|++-+- .++.+.|...-++..++++...+.++.++.|++.++|...
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~a---------- 95 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSA---------- 95 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccc----------
Confidence 35589999999999999999999998654 4566777655566688888999999999999999999731
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh----------CCchhHHHHHHHHHHHHHHH---
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL----------NIPESVSGFLFTTVFTLLIS--- 178 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~----------~l~~~~~~ii~~l~~~~~~~--- 178 (383)
.+++.|+++.+|+..++..+|.+++.....+.+.+.+.+.+++.+. +.|...+...+..+...++.
T Consensus 96 -Gs~~~ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv 174 (554)
T KOG1286|consen 96 -GSFYTYAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGV 174 (554)
T ss_pred -ccceeeeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999888888888888899988875 33332222233222222222
Q ss_pred --hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCC---C-----CCCCcCcchhhhHHHHHHHhhhccHHHH
Q 042761 179 --IGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGG---WSGL---D-----GSGNWGKVPATIPVIIFSLVYHDLAPVL 245 (383)
Q Consensus 179 --~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~---~~~~---~-----~~~~~~~~~~a~~i~~fsf~~~~~ip~l 245 (383)
+.+.|.....+.+++...++.+..++.++....+ +... + .+.++.++...+...+|+|.+.+.+...
T Consensus 175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~ 254 (554)
T KOG1286|consen 175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT 254 (554)
T ss_pred hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence 1345555555555555444333333222222221 1110 1 2334778889999999999999999888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cc--cCHH-HHHh-hcCchhHHH---HHHHHHHHHHHH
Q 042761 246 CAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD-QV--IDPV-ELLM-RVRWSGVSV---MVEAFSLMAVGT 317 (383)
Q Consensus 246 ~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~--~~pl-~~l~-~~~~~~~~~---~~~~~~~~al~t 317 (383)
.+|.+||+|++|+++......++++|++..+.+....|.++ +. +.+. +.+. ..++.++.+ ++++.+++++.|
T Consensus 255 a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s 334 (554)
T KOG1286|consen 255 AEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLS 334 (554)
T ss_pred HHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHH
Confidence 88988778899999999999999999998888778888765 22 1221 1121 234444555 999999999999
Q ss_pred HHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 318 SLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 318 S~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
+.++..++....+..+-++.. .| |.+++ .||.|.|+.+.+++-+
T Consensus 335 ~~n~~~y~~sR~l~amA~~G~----------~P-k~f~~---v~~~g~P~~a~~v~~~ 378 (554)
T KOG1286|consen 335 SLNSSLYAGSRVLYALAKDGL----------AP-KFFAR---VDRRGVPLVAVLVSGL 378 (554)
T ss_pred HHHHHhHHhHHHHHHHHhcCC----------cc-hHHhh---cCCCCCchhHHHHHHH
Confidence 999999999988877754443 23 44555 7888999998876543
No 43
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.79 E-value=8.1e-17 Score=162.46 Aligned_cols=314 Identities=20% Similarity=0.255 Sum_probs=225.1
Q ss_pred cccCCccHHH-HHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAG-AVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~-~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..+|+.+.++ .....++.++|.|++.+|......+ ....+..++++++..+.++.+.|++.+.|+.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~------------ 75 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSA------------ 75 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC------------
Confidence 4457778887 9999999999999999998877654 2233335666677777799999999888775
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc---------hhHHHHHHHHHHHHHHHhcchh
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP---------ESVSGFLFTTVFTLLISIGGTR 183 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~---------~~~~~ii~~l~~~~~~~~~g~k 183 (383)
.++++++++.+||..+++.++.+++.......+.....+.++...++.+ .......+..++..++. .|.|
T Consensus 76 GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~-~G~~ 154 (466)
T COG0531 76 GGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNL-RGIK 154 (466)
T ss_pred CCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHH-hhHH
Confidence 4799999999999999999999998877777777777777777766421 22333444455565665 7999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--C-CC----CCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhH
Q 042761 184 ATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG--L-DG----SGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRL 256 (383)
Q Consensus 184 ~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~--~-~~----~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~ 256 (383)
...+++.+.+..+++.++.+.+.+....+.++ . .. ...+..+..++...+++|.+.+..+.+.+|+||++|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 99999999999988777666554444333321 1 11 11223466667778999999999999999997767889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccc-ccc---CHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 042761 257 RASVLLGSLIPLLSLLVWDAISLGLSAQAD-QVI---DPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFK 331 (383)
Q Consensus 257 ~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~~---~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~ 331 (383)
||++..+..++.++|++...+..+..|.++ ... +|...... ..+.+...++.+..+++..++..+...+..+.+.
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999898888642 111 45433322 3335788899999999999999998888886665
Q ss_pred HhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeec
Q 042761 332 EQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVV 374 (383)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~ 374 (383)
.+-++. ..|+ .+.+. ..|++.|..+.++..
T Consensus 315 ~~ardg----------~lP~-~~~~~--~~~~~~P~~a~~~~~ 344 (466)
T COG0531 315 AMARDG----------LLPK-FFAKV--NPKGRTPVIALILTG 344 (466)
T ss_pred HHHhCC----------CccH-HHHHh--CCCCCCCHHHHHHHH
Confidence 544322 3442 22231 334458887766543
No 44
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.77 E-value=6.1e-16 Score=157.04 Aligned_cols=314 Identities=12% Similarity=-0.029 Sum_probs=198.3
Q ss_pred ccCCccHHHHHHHHHhhh-hhhhhhhhHHH-hcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTS-IGSGILALPQK-ASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigti-IGaGIL~LP~a-~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
-+|+.+.++...+.++.+ +|+|+++++.. .+.+|. ..+...+++++.....++.++|++.++|+.
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~a------------ 77 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPIS------------ 77 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------
Confidence 468899999999999985 99999998875 456665 556677888888899999999999999975
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh------C----C--c-----hhHHHHHHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL------N----I--P-----ESVSGFLFTTVFTL 175 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~----l--~-----~~~~~ii~~l~~~~ 175 (383)
.+.+.++++.+||..+++.+|.+++.......+.......++..++ + . | ......++.++...
T Consensus 78 GG~Y~~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (475)
T TIGR03428 78 GAIYQWSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTV 157 (475)
T ss_pred CCHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHH
Confidence 4788999999999999999999887655444333333444443221 1 1 1 11223334444555
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---CC-C----CCCcC-cchhhhHHHHHHHhhhccHHHHH
Q 042761 176 LISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG---LD-G----SGNWG-KVPATIPVIIFSLVYHDLAPVLC 246 (383)
Q Consensus 176 ~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~---~~-~----~~~~~-~~~~a~~i~~fsf~~~~~ip~l~ 246 (383)
++. .|+|...+++++.+..+++.++++++......+.+. +. . ..++. .+..+.....|+|.+.+....+.
T Consensus 158 in~-~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 236 (475)
T TIGR03428 158 INC-IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELS 236 (475)
T ss_pred HHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHH
Confidence 665 699999999999888876655554432222222111 10 0 01111 22234445678999999999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc---cc--cCHHHHHhhcCchhHHHHHHHHHHHHHHHHHHH
Q 042761 247 AYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD---QV--IDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIG 321 (383)
Q Consensus 247 ~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~---~~--~~pl~~l~~~~~~~~~~~~~~~~~~al~tS~~g 321 (383)
+|+||++|++||++..+..+..++|.+...+.+...|..+ .. ..|.......+.++. ..+....+++...+.++
T Consensus 237 eE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~ 315 (475)
T TIGR03428 237 EETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWG-TVLLVDVAIAILVCTLA 315 (475)
T ss_pred HHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhH-HHHHHHHHHHHHHHHHH
Confidence 9998788999999999999887777665555444333211 11 123221112233333 33444556677777777
Q ss_pred HHHhHHHHHHHhhcccCCCCCCCCCCCCcc-cccccccccc-cCcchheeeeeeccc
Q 042761 322 TLLGFSEFFKEQLKSLSWNSSPTKTSKEST-EFFGLRNWWG-RNKISFTAMAMVVTP 376 (383)
Q Consensus 322 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-r~~~~~~~~~l~~~p 376 (383)
...+.+..+...- +++ ..|. +.+++ ++ |+|+|..+.+++.+-
T Consensus 316 ~~~~~sR~~~a~A-rdg---------~lP~s~~~~~---v~~r~~tP~~A~~l~~~i 359 (475)
T TIGR03428 316 IQTAGSRLMFSMA-RDG---------KLPASAQLSR---VHPRTGTPILPSIVIGVL 359 (475)
T ss_pred HHHHHHHHHHHHH-hcC---------CCcchHHhcc---cCCCCCCcHHHHHHHHHH
Confidence 7777664443332 222 1221 23333 44 778998876665443
No 45
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.76 E-value=4.5e-16 Score=144.92 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=201.9
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHhc---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHH
Q 042761 42 AGAVALIIGTSIGSGILALPQKAS---PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTM 118 (383)
Q Consensus 42 ~~~~~~iigtiIGaGIL~LP~a~~---~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (383)
....+..+|+++|||.-+-.+.++ +.|+ .|...+++++++...++..+.+.+.+.+. .+|.|.
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~-~s~~gIivs~vlf~~~g~vim~ig~~f~a-------------~~y~~~ 71 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGV-YSILGIILSTVLFTLSGAVIMTIGKKFNA-------------TSYREI 71 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHhcc-------------cchHHH
Confidence 456677899999999999998654 7776 57778888899889999999999887755 589999
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q 042761 119 AQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIG 198 (383)
Q Consensus 119 a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~ 198 (383)
.++.+||+.+.+.+....+++++.++.+.++.|+.+.+.+|+|+|++.+++........+..+.+.+.++|.+.++.+++
T Consensus 72 ~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LIi 151 (349)
T COG3949 72 LKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGRVEGIITVNGIITPFLII 151 (349)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999777766655455433388888899888888876
Q ss_pred HHHHHHHHHHhhcCCCCC---CCCCCcCcchhhhHHHHHHHhhhcc---HHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 042761 199 LLVAIEVIAVVVGGWSGL---DGSGNWGKVPATIPVIIFSLVYHDL---APVLCAYLGGDLPRLRASVLLGSLIPLLSLL 272 (383)
Q Consensus 199 ~l~~iiv~~~~~~~~~~~---~~~~~~~~~~~a~~i~~fsf~~~~~---ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi 272 (383)
.+..+.. ........+. +.+. .+-|.+..+-+.+++.... +..+.+++ +++|+..++-..|-.+..++..
T Consensus 152 ~l~~v~~-~~~f~~~~~~a~~~~~~--~~~W~~~~~~Y~alNi~~~~avLv~lg~~~-~~~~~~~~g~l~gglIlgvl~~ 227 (349)
T COG3949 152 ILVLVTL-SFQFTNLGNAAQIVLTK--QGNWKASAVGYGALNILVAVAVLVPLGGRM-ESRKVSGIGGLIGGLILGVLLF 227 (349)
T ss_pred HHHHHHH-HHHHhhccchhhhcCCc--CCChHHHHHhhhhHHHHhHhHhhhhhcccc-cccchhhhhhhhhhHHHHHHHH
Confidence 5443321 1111111110 1111 1222333333566653332 22333445 3566677776666666666666
Q ss_pred HHHHHHhccCCccccccCHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCC
Q 042761 273 VWDAISLGLSAQADQVIDPVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSW 339 (383)
Q Consensus 273 ~~~~~~~g~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~ 339 (383)
+.+....+..|.-.+.|-|+-.+....++.....+....+.++.|+.++..+++..++.+.++++++
T Consensus 228 l~nlsLi~~~~~v~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~iy~l~~r~~s~~~~~~~ 294 (349)
T COG3949 228 LINLSLIALYDKVVNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGLIYGLASRLTSFFPRRYW 294 (349)
T ss_pred HHHHHHHhhcchhhccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchHH
Confidence 6777777777644466778665554445678889999999999999999999999887776665543
No 46
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.74 E-value=2.2e-18 Score=175.03 Aligned_cols=304 Identities=18% Similarity=0.174 Sum_probs=222.8
Q ss_pred HHHHhhhhhhhhhh-hHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhc
Q 042761 46 ALIIGTSIGSGILA-LPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLG 124 (383)
Q Consensus 46 ~~iigtiIGaGIL~-LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G 124 (383)
++.+++++|+|++. .+....++|.....+.+++++++.+..+..+.|+..+.|+. .+++.++++.+|
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~------------Gg~y~y~~~~lg 71 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSA------------GGFYAYASRGLG 71 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhccc------------cchhhhhhhccC
Confidence 45688999999875 45567788875567778899999999999999999998864 589999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhh--h-CCc-hhHH----HHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 042761 125 DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL--L-NIP-ESVS----GFLFTTVFTLLISIGGTRATDQFNQWLTASM 196 (383)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~--~-~l~-~~~~----~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~ 196 (383)
+..|+..+|.+++...........+.+..++.+ + +.+ .+.. ..++.+++..+++ .|+|...+++.++...+
T Consensus 72 ~~~Gf~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 72 PALGFAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNL-FGVRVSGKIEFILTIIK 150 (478)
T ss_pred CcCCceeeHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhh-hhhhccchHHHHHHHHh
Confidence 999999999988877666666666666666555 2 344 3333 4555555566665 69999999999999888
Q ss_pred HHHHHHHHHHHHh---hc-CCCCC-----------CCCC--------CcCcchhhhHHHHHHHhhhccHHHHHHHhcCCh
Q 042761 197 IGLLVAIEVIAVV---VG-GWSGL-----------DGSG--------NWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDL 253 (383)
Q Consensus 197 i~~l~~iiv~~~~---~~-~~~~~-----------~~~~--------~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~ 253 (383)
++.++.+++.... .. +..+. ..+. ++.+++.++...+++|.+.+......+|.|+|+
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 8777666544411 11 11111 0122 256788899999999999999988889998788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-c-cc-----CHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 042761 254 PRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD-Q-VI-----DPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLG 325 (383)
Q Consensus 254 k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~-~~-----~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~ 325 (383)
|++||++..+.....++|++..++.....|.++ . .+ .|... ....+.++...++++..+++..++.++...+
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 899999999999999999998888777777654 1 11 24322 3334567788899999999999988888877
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeeecc
Q 042761 326 FSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVT 375 (383)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 375 (383)
.+..+..+-+ ++..|+++..+ ++|||.|..+.+++.+
T Consensus 311 ~sR~l~ama~----------dg~lP~~~~~~---~~k~~~P~~Ai~~~~~ 347 (478)
T PF00324_consen 311 ASRLLYAMAR----------DGLLPKKFFAR---HPKNGVPYVAILVSSI 347 (478)
T ss_pred cceeehhhhh----------hhhhhhhhhhh---hhcCCceEEEEeeehh
Confidence 7755443332 23345455555 7889999998877643
No 47
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.73 E-value=1.2e-14 Score=140.20 Aligned_cols=285 Identities=19% Similarity=0.213 Sum_probs=210.3
Q ss_pred CccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHH
Q 042761 38 KGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRT 117 (383)
Q Consensus 38 ~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (383)
|.|..|...+++.+++|+|++.+|...++.+- .+++..+++++......+.+.....++|+ .+..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~-------------~~l~~ 66 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG-------------KTLVE 66 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCHHH
Confidence 46888999999999999999999998665442 56666778888888888888888887776 48999
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh--CCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 042761 118 MAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL--NIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTAS 195 (383)
Q Consensus 118 ~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~--~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~ 195 (383)
+.++.+||+.|.+....+.++.....+......++.++..+ ++|.++....+.++...... .|.+.+.|.+.+..+.
T Consensus 67 ~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~-~G~e~i~R~~~~~~~~ 145 (320)
T PF03845_consen 67 ISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAAR-KGIEVIARVAEILFPI 145 (320)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHH
Confidence 99999999999999999998887776667777888887765 56777776666666666664 7999999988887776
Q ss_pred HHHHHHHHHHHHHhhcCCCCCC--CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHH
Q 042761 196 MIGLLVAIEVIAVVVGGWSGLD--GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLV 273 (383)
Q Consensus 196 ~i~~l~~iiv~~~~~~~~~~~~--~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~ 273 (383)
.++.++.+.....-..++++.. .+.++...+.+.....+.|++......+.+.+ +++|+.+|....+..+..++|..
T Consensus 146 ~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~k~~~~~~~~~~~~~~~ 224 (320)
T PF03845_consen 146 FLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV-KDKKKLKKSLLIAILISGLFLLF 224 (320)
T ss_pred HHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHHHHHHH
Confidence 6555444432222222333332 34566777777777788888777777777777 57788899999999999999998
Q ss_pred HHHHHhccCCccc--cccCHH-HHHhhcC----chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 274 WDAISLGLSAQAD--QVIDPV-ELLMRVR----WSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 274 ~~~~~~g~~~~~~--~~~~pl-~~l~~~~----~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
..+...+.++.++ +..-|. +...... -+.+..+...+=..++....-...+...+.+++.++.++
T Consensus 225 ~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 225 IIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred HHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8888888888654 334453 2222111 134555666666667777777788888888888887664
No 48
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.71 E-value=2.4e-16 Score=155.26 Aligned_cols=286 Identities=16% Similarity=0.139 Sum_probs=194.0
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
+++.|..++++++.++++|+|++++|++++..|.+.+++++.+++.++.++.+++.+++.+.++ .+|
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~-------------~ty 69 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE-------------RTY 69 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC-------------CCH
Confidence 4567899999999999999999999999999999999999999999999999999999876544 499
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC----Cch--------hH-HHHHHHHHHHHHHHhcch
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN----IPE--------SV-SGFLFTTVFTLLISIGGT 182 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~----l~~--------~~-~~ii~~l~~~~~~~~~g~ 182 (383)
.+.+++.+|+.++............+ +.+|....++.+..... .+. +. ..+....++.++...+.+
T Consensus 70 ~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l 148 (411)
T KOG1305|consen 70 SSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNL 148 (411)
T ss_pred HHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhh
Confidence 99999999999865555555444444 47888888888775531 111 11 233333344445543333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhh-cC--CCCC-CCCCC--cCcchhhhHHHHHHHhhhccHHHHHHHhcCC-hhh
Q 042761 183 RATDQFNQWLTASMIGLLVAIEVIAVVV-GG--WSGL-DGSGN--WGKVPATIPVIIFSLVYHDLAPVLCAYLGGD-LPR 255 (383)
Q Consensus 183 k~~~~~~~~~~~~~i~~l~~iiv~~~~~-~~--~~~~-~~~~~--~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~-~k~ 255 (383)
...++.+.+.....+. ++.+.+..... +. .... ..+++ +.+.+.++|+.+|+|.||+++-.+++|++++ +++
T Consensus 149 ~~Lk~tS~~s~~~~~~-fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~ 227 (411)
T KOG1305|consen 149 DSLKYTSALSLASVVY-FVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKK 227 (411)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHH
Confidence 3333333222222222 22211112222 11 1111 11222 2578899999999999999988889999533 467
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccccccC-HHHHHhhc-C---chhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042761 256 LRASVLLGSLIPLLSLLVWDAISLGLSAQADQVID-PVELLMRV-R---WSGVSVMVEAFSLMAVGTSLIGTLLGFSEFF 330 (383)
Q Consensus 256 ~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~-pl~~l~~~-~---~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l 330 (383)
+.+....+...+.++|... +..|++...+...+ .+....+. . ..+....+.....++.+.+++....++++++
T Consensus 228 i~~v~~~~~~~~~~iy~~~--g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l 305 (411)
T KOG1305|consen 228 IQRVSNIAIILATLIYLLT--GLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNL 305 (411)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999876 44777766654322 12111111 0 1134578888899999999999999999998
Q ss_pred HHhhcccC
Q 042761 331 KEQLKSLS 338 (383)
Q Consensus 331 ~~~~~~~~ 338 (383)
.++.....
T Consensus 306 ~~~~~~~~ 313 (411)
T KOG1305|consen 306 DELLFPYQ 313 (411)
T ss_pred HHHhcccC
Confidence 88775544
No 49
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.67 E-value=5.3e-14 Score=143.62 Aligned_cols=310 Identities=11% Similarity=0.060 Sum_probs=181.3
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGF-LLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
++|+++.++.+++.++.++|.+ .+|.+++..|. .+++..++++++ ....++.++|++.++|+.. .
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~-~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~a-----------G 70 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGY-SAIPWYILSAILFFIPFALMMAEYGSAFKDEK-----------G 70 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-----------C
Confidence 3678999999999999999976 45877777785 344555555544 3558899999999998621 4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHH---HHHH-HH-----hHhHhHhh---hCCch--h--HHHHHHHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSM---IAYC-SK-----SGEILYHL---LNIPE--S--VSGFLFTTVFTLLI 177 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~---~ay~-~~-----~g~~l~~~---~~l~~--~--~~~ii~~l~~~~~~ 177 (383)
+.+.+.++.+|++.+++..+.++....... .++. .. .+.+..+. .+.+. . ...+++.++++.++
T Consensus 71 G~Y~w~~~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn 150 (496)
T PRK15238 71 GIYSWMNKSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVA 150 (496)
T ss_pred cHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988776544332221 1111 00 11111111 11111 1 11222223445556
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHH-HHHH-HH-HhhcCCC--C-C------CC-CCCcC---cchhhhHHHHHHHhhhcc
Q 042761 178 SIGGTRATDQFNQWLTASMIGLLV-AIEV-IA-VVVGGWS--G-L------DG-SGNWG---KVPATIPVIIFSLVYHDL 241 (383)
Q Consensus 178 ~~~g~k~~~~~~~~~~~~~i~~l~-~iiv-~~-~~~~~~~--~-~------~~-~~~~~---~~~~a~~i~~fsf~~~~~ 241 (383)
. +|+|..++++++.+..++...+ .+++ .. ....+.+ + . +. ..+|. +...++....|+|.+.+.
T Consensus 151 ~-~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~ 229 (496)
T PRK15238 151 S-KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEA 229 (496)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHH
Confidence 4 7999999999987666543221 1111 11 1111111 0 0 00 11222 344556677899999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc--------CHHHHHhhc---------------
Q 042761 242 APVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVI--------DPVELLMRV--------------- 298 (383)
Q Consensus 242 ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~--------~pl~~l~~~--------------- 298 (383)
.....+|.++++|++||++..+...+.++|++..+.+....|.++... .|...+...
T Consensus 230 ~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~ 309 (496)
T PRK15238 230 VGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAAS 309 (496)
T ss_pred HHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhh
Confidence 999999998778899999999999999999987655544444332111 111000100
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 299 --RWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 299 --~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
...+...++++..+.+..++..+...+.+..+...-+ ++..| +.+++ +||+|.|..+.+++
T Consensus 310 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~----------~g~~P-~~f~k---~nk~g~P~~a~~~~ 372 (496)
T PRK15238 310 LTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTP----------KALWP-KKMTK---LNKNGMPANAMWLQ 372 (496)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCc----------cCccc-HHHHh---hCcCCCcHHHHHHH
Confidence 1133344555666666666666666554432222111 12244 44555 67889999877554
No 50
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.67 E-value=9.7e-14 Score=141.20 Aligned_cols=314 Identities=9% Similarity=0.028 Sum_probs=193.0
Q ss_pred ccCCccHHHHHHHHHhhh-hhhhhhhh-HHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTS-IGSGILAL-PQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigti-IGaGIL~L-P~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
.+|+.+.++...+.++.+ ..+|++.. +..++.+|....++..++++++....++.++|++.++|+.
T Consensus 10 l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~------------ 77 (482)
T TIGR00907 10 LKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTS------------ 77 (482)
T ss_pred eecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCC------------
Confidence 467799999999888854 23787654 4456677764456678888999999999999999999975
Q ss_pred cCHHHHHHHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-------C-c-hhH---HHHHHHHHHHHH
Q 042761 113 ISIRTMAQETLG----DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-------I-P-ESV---SGFLFTTVFTLL 176 (383)
Q Consensus 113 ~~~~~~a~~~~G----~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-------l-~-~~~---~~ii~~l~~~~~ 176 (383)
.+.+.++++++| +..+++.+|.+++.......+.....++++...++ . + .+. ..+.+.++++.+
T Consensus 78 Gg~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 78 GGQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred ccHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHH
Confidence 478899999987 46678888888766555555554455555543321 1 1 121 122233445556
Q ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc--CCCC-------CCCCC-CcC----cchhhhHHHHHHHhhhccH
Q 042761 177 ISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVG--GWSG-------LDGSG-NWG----KVPATIPVIIFSLVYHDLA 242 (383)
Q Consensus 177 ~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~--~~~~-------~~~~~-~~~----~~~~a~~i~~fsf~~~~~i 242 (383)
+. .|.|..++++++....+++.++++++...... +.+. ..... +|. ....++....|+|.+.+..
T Consensus 158 n~-~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NS-LPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HH-hhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchh
Confidence 65 69999999999887776655543332222221 1110 01111 221 2333444567999999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCC-ccc--cc--cCHHH-HHhh-cCchhHHHHHHHHHHHHH
Q 042761 243 PVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSA-QAD--QV--IDPVE-LLMR-VRWSGVSVMVEAFSLMAV 315 (383)
Q Consensus 243 p~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~-~~~--~~--~~pl~-~l~~-~~~~~~~~~~~~~~~~al 315 (383)
..+.+|.++++|++||++..+..+..++|++...+.....+ .++ +. .+|.. .+.. .+.++...++....+++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999998778899999999888766544433322222222 111 11 14653 3332 234455666777777777
Q ss_pred HHHHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccc-cCcchheeeeee
Q 042761 316 GTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWG-RNKISFTAMAMV 373 (383)
Q Consensus 316 ~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~l~ 373 (383)
.++.++...+.+..+..+=++...+. ++.+++ ++ |+|.|..+.++.
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~---------~~~f~~---v~~~~~~P~~ai~~~ 363 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPF---------SPLWSR---VNPRTQVPLNAVWLS 363 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCc---------hHhhce---eCCCCCCcHHHHHHH
Confidence 88888888887766654433333210 023344 33 448888776554
No 51
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.65 E-value=1.3e-13 Score=140.90 Aligned_cols=308 Identities=11% Similarity=0.059 Sum_probs=187.4
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhhh-cCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGF-LLIEALILIEINVSLR-RGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~-~~~~~~~l~e~~~~~~-~~~~~~~~~~~~~~ 112 (383)
.+||++.++.+++.++.++ ++..+| .++..|+ ..+...++++++ ....+++++|++..+| ++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~-~~i~~~i~~~l~~~lp~al~~AELas~~p~~~------------ 65 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGF-HLVFFLLLGGILWFIPVALCAAEMATVDGWEE------------ 65 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC------------
Confidence 3577999999998888875 556788 4667774 233334443333 3458999999998775 43
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH---HHHhHhHhHhhhC--CchhHH---HHHHHHHHHHHHHhcchhh
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY---CSKSGEILYHLLN--IPESVS---GFLFTTVFTLLISIGGTRA 184 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay---~~~~g~~l~~~~~--l~~~~~---~ii~~l~~~~~~~~~g~k~ 184 (383)
.+.+.++++.+|++.+++..+.+|+.......+. ..+...++...-+ .+.+.. .+.+..+++.+++ .|.|.
T Consensus 66 GG~y~wv~~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~-~G~k~ 144 (507)
T TIGR00910 66 GGIFAWVSNTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQF-GGTKR 144 (507)
T ss_pred CCeeeehhhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHH-hhhHH
Confidence 4788999999999999998888887554322222 2222233221111 122211 1222223344554 79999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHh--hcCCC-CCC-----CCCCcC--cchhhhHHHHHHHhhhccHHHHHHHhcCCh
Q 042761 185 TDQFNQWLTAS-MIGLLVAIEVIAVV--VGGWS-GLD-----GSGNWG--KVPATIPVIIFSLVYHDLAPVLCAYLGGDL 253 (383)
Q Consensus 185 ~~~~~~~~~~~-~i~~l~~iiv~~~~--~~~~~-~~~-----~~~~~~--~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~ 253 (383)
..+++++.... +++.++++++++.. ..+.. ..+ ...++. +....+...+|+|.+.+......+|+++++
T Consensus 145 ~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~ 224 (507)
T TIGR00910 145 TAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPG 224 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCc
Confidence 99998875443 33333333222221 12111 100 111221 223334446789999999999999998778
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-cccCH-HHHH----hhc--CchhHHHHHHHHHHHHHHHHHHHHHHh
Q 042761 254 PRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD-QVIDP-VELL----MRV--RWSGVSVMVEAFSLMAVGTSLIGTLLG 325 (383)
Q Consensus 254 k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~-~~~~p-l~~l----~~~--~~~~~~~~~~~~~~~al~tS~~g~~~~ 325 (383)
|++||++..+..++.++|.+.+++.....|.++ ...++ ...+ ... +.+|...++.+...++++++..++..+
T Consensus 225 r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~ 304 (507)
T TIGR00910 225 RDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVG 304 (507)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999886666556667654 22222 2221 111 235666778888888888888888888
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 326 FSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
-+..+...-++.. .| +.+++ ++|+|.|..+.++.
T Consensus 305 ~sR~l~~~ardg~----------lP-~~~~k---~nk~~~P~~a~~~~ 338 (507)
T TIGR00910 305 PSRGMFAAAQKGL----------LP-AAFAK---MNKHEVPVPLVIIQ 338 (507)
T ss_pred HHHHHHHhcccCC----------cC-HHHHh---hCcCCCcHHHHHHH
Confidence 7766544333222 34 33444 56889998877654
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.64 E-value=2.5e-13 Score=137.90 Aligned_cols=305 Identities=13% Similarity=0.101 Sum_probs=183.3
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFL-LIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
||++.++.+++.+.++++ +..+|.. +..|. .+++..++++++. .-.+++++|++.++|++ .+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~------------GG~ 64 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPEK------------GGV 64 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCC------------CCc
Confidence 457788777765555544 4444654 56774 4445555655544 35889999999988875 478
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHH---HHHHHhHhHhHhh--h--CC--chhH---HHHHHHHHHHHHHHhcchh
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMI---AYCSKSGEILYHL--L--NI--PESV---SGFLFTTVFTLLISIGGTR 183 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~---ay~~~~g~~l~~~--~--~l--~~~~---~~ii~~l~~~~~~~~~g~k 183 (383)
++++++.+|+..+++.++.+++....... ++....-.+.... + ++ +.+. ..+.+..+++.++. .|+|
T Consensus 65 y~~~~~a~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~-~gv~ 143 (474)
T TIGR03813 65 FRWVGEAFGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIAL-RGVA 143 (474)
T ss_pred eeeHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHh-cChH
Confidence 89999999999999999988876432211 1111111111111 0 11 2222 12222333455664 7999
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHhh--cCCC-CC--C----CC--CCcCcchhhhHHHHHHHhhhccHHHHHHHhcC
Q 042761 184 ATDQFNQWLTAS-MIGLLVAIEVIAVVV--GGWS-GL--D----GS--GNWGKVPATIPVIIFSLVYHDLAPVLCAYLGG 251 (383)
Q Consensus 184 ~~~~~~~~~~~~-~i~~l~~iiv~~~~~--~~~~-~~--~----~~--~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~ 251 (383)
..++++.+.... ++++++.+++++... .+.+ .. . .+ .++.....+ ..++++|.+.+..+...+|+++
T Consensus 144 ~~~~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~kn 222 (474)
T TIGR03813 144 AFTKVAKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDN 222 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccC
Confidence 999998875433 344444433333221 1111 00 0 11 122233222 3457899999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-ccCH-HHHH----hhcCchhHHHHHHHHHHHHHHHHHHHHHHh
Q 042761 252 DLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQ-VIDP-VELL----MRVRWSGVSVMVEAFSLMAVGTSLIGTLLG 325 (383)
Q Consensus 252 ~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~-~~~p-l~~l----~~~~~~~~~~~~~~~~~~al~tS~~g~~~~ 325 (383)
++|++||++..+..++.++|++.+.+..+..|.++. ..++ .... ...+.++...++.+...++.+++..+...+
T Consensus 223 P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~ 302 (474)
T TIGR03813 223 PDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAG 302 (474)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999988888888887652 2223 2111 223445666677777777777777766666
Q ss_pred HHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 326 FSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 326 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
-+..+...-++ +..| +.+++ ++|+|.|..+.++.
T Consensus 303 ~sR~~~a~ard----------g~lP-~~~~k---v~k~~~P~~a~~~~ 336 (474)
T TIGR03813 303 PSSGMLAVAKA----------GYLP-TFFQK---TNKNGMPIHIMFVQ 336 (474)
T ss_pred HHHHHHHHhhc----------CCCC-HHHhc---cCCCCCcHHHHHHH
Confidence 55444332221 2244 34555 56788998765443
No 53
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.54 E-value=1e-14 Score=135.65 Aligned_cols=296 Identities=14% Similarity=0.118 Sum_probs=208.9
Q ss_pred hhhhcccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc
Q 042761 30 ETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109 (383)
Q Consensus 30 ~~~~~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~ 109 (383)
|+....+.+.+.+++..++.|++-|-=|++||++....|+ +++.+++.++.+++|++..++||...-.++ | +--+
T Consensus 108 ~G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGy-w~i~amvg~A~vCcyTGk~Li~CLYE~~~d-G---evVr 182 (524)
T KOG4303|consen 108 DGHGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGY-WSIGAMVGVAYVCCYTGKLLIECLYENGED-G---EVVR 182 (524)
T ss_pred cCCCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcch-hHHHHHHhhhhhhhccchhhhhhhccCCCC-C---cEEE
Confidence 4434445789999999999999999999999999999898 688999999999999999999997532211 0 0012
Q ss_pred ccccCHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC---CchhHHHHHHHHHHHHHHHhcchhhH
Q 042761 110 FEVISIRTMAQETLGD-WGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN---IPESVSGFLFTTVFTLLISIGGTRAT 185 (383)
Q Consensus 110 ~~~~~~~~~a~~~~G~-~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---l~~~~~~ii~~l~~~~~~~~~g~k~~ 185 (383)
+| ++|.++|+..+++ .++......+.+-+...|+.|++..|+.+..-++ .+..-+.++..+.+.+..++..+|.+
T Consensus 183 vR-dsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~V 261 (524)
T KOG4303|consen 183 VR-DSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIV 261 (524)
T ss_pred ee-hhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHH
Confidence 33 7999999996665 5668899999999999999999999999988873 33444555555555555555688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-hcCCCC--CCCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHH
Q 042761 186 DQFNQWLTASMIGLLVAIEVIAVV-VGGWSG--LDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLL 262 (383)
Q Consensus 186 ~~~~~~~~~~~i~~l~~iiv~~~~-~~~~~~--~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~ 262 (383)
++++.+.+..-++.=++++..++. ..+|.- ....-+...++..+++++|+|+.|..+|++...| ++|.++...+-+
T Consensus 262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM-~~ps~Fn~Ml~W 340 (524)
T KOG4303|consen 262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM-KNPSQFNVMLKW 340 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc-CChhHheeeeeh
Confidence 888877776655444444433332 344432 2223344567778899999999999999998888 577777666666
Q ss_pred HHHHHHHHHHHHHHHHhccCCccccccCHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 042761 263 GSLIPLLSLLVWDAISLGLSAQADQVIDPVELLM-RVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSL 337 (383)
Q Consensus 263 ~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl~~l~-~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~ 337 (383)
+-+.+.++=.++.+ ++.+.+.+... +.+. ..++..+..++++|.+.--+-|++-=.++-.|-++.-+-+.
T Consensus 341 sHIAAaVfK~~Fg~--~~fLTf~~~Tq---evItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g 411 (524)
T KOG4303|consen 341 SHIAAAVFKVVFGM--LGFLTFGELTQ---EVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLG 411 (524)
T ss_pred HHHHHHHHHHHHHH--heeeeechhhH---HHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcC
Confidence 66655555554433 44454443211 1111 13344578899999999888999988888888886544333
No 54
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.45 E-value=9.5e-13 Score=114.56 Aligned_cols=208 Identities=14% Similarity=0.148 Sum_probs=146.2
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhc-CCCCCCccc----
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINV------SLRR-GKRKGEEEN---- 108 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~------~~~~-~~~~~~~~~---- 108 (383)
+..++. .++|.++|+|.|++|.+++.+||..++.++.+.+++++..+.+++|... ++++ ++.+.|+|+
T Consensus 14 q~vgll-ymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 14 QTVGLL-YMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhHh-hhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 445555 4899999999999999999999999999999999999999999998652 2222 111111111
Q ss_pred ----c-----------------------------ccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhH
Q 042761 109 ----E-----------------------------FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILY 155 (383)
Q Consensus 109 ----~-----------------------------~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~ 155 (383)
+ .++.+..+|+.++|.|.+-.++.+++.+|+||.++.|..+.-....
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 0 2357889999999999999999999999999999999877655444
Q ss_pred hhh---------CC-------------c--------hhHHHHHHHHHHH-HHHHhcchhhHHHHHHHHHHHHHHHHHHHH
Q 042761 156 HLL---------NI-------------P--------ESVSGFLFTTVFT-LLISIGGTRATDQFNQWLTASMIGLLVAIE 204 (383)
Q Consensus 156 ~~~---------~l-------------~--------~~~~~ii~~l~~~-~~~~~~g~k~~~~~~~~~~~~~i~~l~~ii 204 (383)
+.. +. + ++....+|+++++ ++.+ .++++.+.++-..+...++.+...+
T Consensus 173 ~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf-~diqktk~iqiltslmrw~~~~~g~ 251 (319)
T KOG3832|consen 173 NITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTF-ADIQKTKHIQILTSLMRWAAFILGI 251 (319)
T ss_pred hhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeE-eccccchhHHHHHHHHHHHhccchh
Confidence 442 10 0 2445667776666 5664 6999999996666666687777665
Q ss_pred HHHHhhcCCCC---CCCCCCcCcchhhhHHHHHHHhhhccHHHHHHHh
Q 042761 205 VIAVVVGGWSG---LDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYL 249 (383)
Q Consensus 205 v~~~~~~~~~~---~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~ 249 (383)
.++.....-+. +++....-++...++-.+++|++|...|.....+
T Consensus 252 ~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 252 SLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred hhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 44432211111 2222334466677788899999999988765444
No 55
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.18 E-value=3.9e-08 Score=96.32 Aligned_cols=267 Identities=17% Similarity=0.190 Sum_probs=155.0
Q ss_pred HHHHhhhhhhhhhhhHHHhc-ccC--cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHH
Q 042761 46 ALIIGTSIGSGILALPQKAS-PAG--IFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQET 122 (383)
Q Consensus 46 ~~iigtiIGaGIL~LP~a~~-~~G--~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 122 (383)
+.+++.-+|||.|-.|.... ++| |+.+.+..++.++..-..+++ + .++.+ .+|+++ ++-
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----a--v~~~g-----------G~~~~l-~~~ 63 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----A--LALVG-----------GGYDSL-SAR 63 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----e--eeecC-----------CCHHHH-HHH
Confidence 35788889999999887653 444 334444444444333333332 2 23321 367776 455
Q ss_pred hchhhHHHHHHHHHHHHH-------HHHHHHHHHhHhHhHhhhCCc-----hhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 123 LGDWGGTLATVFYVFLGY-------TSMIAYCSKSGEILYHLLNIP-----ESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 123 ~G~~~~~l~~~~~~~~~~-------~~~~ay~~~~g~~l~~~~~l~-----~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
.||+.+++..+...+..- ...++|-.+.. .+++.+ .....++|..+...++ +++-|..+++++
T Consensus 64 ~g~~f~~lf~~~~~l~iGP~~aiPRtaa~s~e~~i~----p~~~~~~~~~~l~i~siiff~i~~~l~-~~~~k~~~~iGk 138 (378)
T TIGR00796 64 IGKVFGILFTVILYLTIGPLFAIPRTATVSFEMGIA----PLLHSPTSLLALFIFSLIFFAVVLLLS-LNPSKLIDRVGK 138 (378)
T ss_pred hChHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHH----hccCcccchHHHHHHHHHHHHHHHHHH-cCcccHHHHhHH
Confidence 677778877776554322 12233443322 233221 1122233322222244 478999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc---CcchhhhHHHHHHHh-------hhccHHHHHH-HhcCChhhHHHH
Q 042761 191 WLTASMIGLLVAIEVIAVVVGGWSGLDGSGNW---GKVPATIPVIIFSLV-------YHDLAPVLCA-YLGGDLPRLRAS 259 (383)
Q Consensus 191 ~~~~~~i~~l~~iiv~~~~~~~~~~~~~~~~~---~~~~~a~~i~~fsf~-------~~~~ip~l~~-~~~~~~k~~~~a 259 (383)
++++.+++.++.+++.++..+..+......+. ..+..++---+.++- +..++..+.+ ++++++|+.++.
T Consensus 139 ~LTP~lLi~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~ 218 (378)
T TIGR00796 139 FLTPALLVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYT 218 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999998888877666654332211110111 112233322333333 2233344444 565455677888
Q ss_pred HHHHH-HHHHHHHHHHHHHHhccCCccc--cc---cCHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 042761 260 VLLGS-LIPLLSLLVWDAISLGLSAQAD--QV---IDPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKE 332 (383)
Q Consensus 260 i~~~~-~i~~~~Yi~~~~~~~g~~~~~~--~~---~~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~ 332 (383)
+..|. ......|+..+.+.+|..+.++ +. ++++....+ ..++....++.+...+|.+|+.+|...+..|++++
T Consensus 219 i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~ 298 (378)
T TIGR00796 219 IKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHK 298 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 5666777777778888877543 11 223333333 45667788999999999999999999999999888
Q ss_pred hhc
Q 042761 333 QLK 335 (383)
Q Consensus 333 ~~~ 335 (383)
...
T Consensus 299 ~~~ 301 (378)
T TIGR00796 299 LVP 301 (378)
T ss_pred hcC
Confidence 754
No 56
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.12 E-value=2.1e-07 Score=92.11 Aligned_cols=292 Identities=14% Similarity=0.119 Sum_probs=164.6
Q ss_pred CCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 37 EKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
++.|.+++.+...++.||+| |++.|.+.+..| +.+++.+-+++++...+.+.-.-+..+++++. +|++.+....
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~----~~g~~~GGP~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERD----ADGVFRGGPM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeC----CCCCEecChH
Confidence 45899999999999999999 999999976666 46656665555555545555455556666421 1222333444
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHH-HHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSM-IAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTA 194 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~-~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~ 194 (383)
+.+-+...|||.+.+..+++..+ ++.. ....-...+.+++.+++|.++..+++.++...++ +.|.|.+.++.+.+++
T Consensus 120 yyi~~gl~~k~lg~lfa~~~i~~-f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~vi-~GGik~Ia~v~~~lvP 197 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVFLIAS-FGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALII-FGGLKRIAKISSVVVP 197 (425)
T ss_pred HHHHHHhCccHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHH
Confidence 78877778898888877773222 2322 2233456677775668888887777777766666 4899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCC--------CCCCCc----Ccchhhh-------HH--HHHHH-hhhccHHHHHHHhc-C
Q 042761 195 SMIGLLVAIEVIAVVVGGWSGL--------DGSGNW----GKVPATI-------PV--IIFSL-VYHDLAPVLCAYLG-G 251 (383)
Q Consensus 195 ~~i~~l~~iiv~~~~~~~~~~~--------~~~~~~----~~~~~a~-------~i--~~fsf-~~~~~ip~l~~~~~-~ 251 (383)
.+.+.++.... .+...+.++. ....+. .++.... ++ -+||- .+.+..|...+.-+ +
T Consensus 198 ~m~~~Y~~~~l-~ii~~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~ 276 (425)
T TIGR00835 198 FMALLYVIMAL-YIIIMNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGSAPIAAAAAQVS 276 (425)
T ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCcHHHHHHHhcCC
Confidence 98776654432 1222232221 111111 1111100 11 23333 24445555544332 3
Q ss_pred Ch-hhHHH---HHHHHHHHHHHHHHHHHHHHhccCCcccccc-CHH--HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Q 042761 252 DL-PRLRA---SVLLGSLIPLLSLLVWDAISLGLSAQADQVI-DPV--ELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLL 324 (383)
Q Consensus 252 ~~-k~~~~---ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~-~pl--~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~ 324 (383)
+| |+--. ..++++.+++.+-.+ .+.+.|.+.+.+..+ ..+ ++++...+.|..+++.+..++=-.||.+++.+
T Consensus 277 hP~~QGl~~~~~vfiDTivvCt~Tal-vil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~y 355 (425)
T TIGR00835 277 HPVRQGLVQMLGVFIDTMIVCTATAL-VILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYY 355 (425)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 33222 223333322221111 123345443111111 122 22333334466777777777777888899888
Q ss_pred hHHHHHHHhhccc
Q 042761 325 GFSEFFKEQLKSL 337 (383)
Q Consensus 325 ~l~~~l~~~~~~~ 337 (383)
=-..+++.+++++
T Consensus 356 yge~~~~yl~~~~ 368 (425)
T TIGR00835 356 YGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777776543
No 57
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.03 E-value=1.3e-06 Score=88.83 Aligned_cols=291 Identities=13% Similarity=0.064 Sum_probs=163.6
Q ss_pred cccCCccHHHHHHHHHhhhhhhhh-hhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGI-LALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVS-LRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGI-L~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~-~~~~~~~~~~~~~~~ 111 (383)
...|+.+++...+.++++.+|++. ++.|....+.|+...... .......+.....++....+ .++. +
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~--------- 105 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLA-MIQVPTGYFVLGVLGKKFAIISRKY-N--------- 105 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHc-C---------
Confidence 446788999999999999999995 578887777776321111 11111111111122221111 1111 1
Q ss_pred ccCHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 112 VISIRTMAQETLGDW-GGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~-~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
..++.|+.++-||++ .+.+..+...+..++...+...+.+..++.++++|.+.+.++..++......+.|+|.+...+.
T Consensus 106 ~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 106 AITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred CccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 269999999999954 5677787777777777777778889999999999988887777665454555579999988887
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCC-------C-----CCC--CCcCc--chhhhHHHHHHHhhhccHHHH-HHHh-cC
Q 042761 191 WLTASMIGLLVAIEVIAVVV-GGWSG-------L-----DGS--GNWGK--VPATIPVIIFSLVYHDLAPVL-CAYL-GG 251 (383)
Q Consensus 191 ~~~~~~i~~l~~iiv~~~~~-~~~~~-------~-----~~~--~~~~~--~~~a~~i~~fsf~~~~~ip~l-~~~~-~~ 251 (383)
+-.+.+++..+++.+..... +++++ . .+. .++.. ....+. +..+++.. ..|.. ++.+ .|
T Consensus 186 iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~-~~p~~~~R~~aak 263 (471)
T TIGR02119 186 IQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFW-ILVGIGVI-GLPQTAVRCMSYK 263 (471)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHH-HHHHHHHh-CchHHHHHHHhcC
Confidence 76666654433332222211 12211 0 000 11100 111110 11112111 12332 2323 46
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHH-h--ccCCccccccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042761 252 DLPRLRASVLLGSLIPLLSLLVWDAIS-L--GLSAQADQVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFS 327 (383)
Q Consensus 252 ~~k~~~~ai~~~~~i~~~~Yi~~~~~~-~--g~~~~~~~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~ 327 (383)
|+|+.+|+..++..+...++..+.+.- . ...|..++.++.+.. ..+..++++.-++....+.|+++|.-+...+.+
T Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~~~s 343 (471)
T TIGR02119 264 DSKAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLLQSS 343 (471)
T ss_pred CHHHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999998888766555544432221 1 122322111222222 223346677777777788888888888887777
Q ss_pred HHH-HHhhccc
Q 042761 328 EFF-KEQLKSL 337 (383)
Q Consensus 328 ~~l-~~~~~~~ 337 (383)
..+ +|..++.
T Consensus 344 s~~~~Diy~~~ 354 (471)
T TIGR02119 344 STIIKDLYLNY 354 (471)
T ss_pred HHHHHHHHHHH
Confidence 666 6766543
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=99.00 E-value=2.6e-06 Score=86.88 Aligned_cols=289 Identities=15% Similarity=0.100 Sum_probs=158.8
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSL---IVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~l---ll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~ 109 (383)
...|+.+++-..+.++++.+|++ .++.|....+.|+....... ...++...+.+..+.+...+.+
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----------- 106 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN----------- 106 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 34677888888888889988887 56778777777763211111 1111111112222222222221
Q ss_pred ccccCHHHHHHHHhchh-hHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 110 FEVISIRTMAQETLGDW-GGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 110 ~~~~~~~~~a~~~~G~~-~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
..+..|+.++-||+. .+.+..+...+..+..+.+.+.+.+..++.++++|.+.+.++..++......+.|+|.+...
T Consensus 107 --~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 107 --AVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred --CccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 268999999888854 56666665555555666677788899999999999887766655554444445799998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hcCCCC-----------C-CC--CCCcCcchhhhHH-HHHHHhhhccHHHH-HHHh-c
Q 042761 189 NQWLTASMIGLLVAIEVIAVV-VGGWSG-----------L-DG--SGNWGKVPATIPV-IIFSLVYHDLAPVL-CAYL-G 250 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~-~~~~~~-----------~-~~--~~~~~~~~~a~~i-~~fsf~~~~~ip~l-~~~~-~ 250 (383)
+.+-.+.+++..+++.+.... .++++. . .+ ..++......... ....++.. ..|.. ++.+ .
T Consensus 185 D~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~p~~~qR~~aa 263 (483)
T PRK09442 185 DALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVI-GLPHTAVRCMSY 263 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHh-CCCHHHHHHHHc
Confidence 777666554433332211111 111110 0 00 1111111111110 11111111 11322 2333 4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHH---HHhccCCccccccCHH-HHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhH
Q 042761 251 GDLPRLRASVLLGSLIPLLSLLVWDA---ISLGLSAQADQVIDPV-ELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGF 326 (383)
Q Consensus 251 ~~~k~~~~ai~~~~~i~~~~Yi~~~~---~~~g~~~~~~~~~~pl-~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l 326 (383)
||+|+.+|+..++......+++.... ......|..++.++.+ ..+.+..++++..++....+.|+++|.-+...+.
T Consensus 264 ks~~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l~~~ 343 (483)
T PRK09442 264 KDSKALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQLLQS 343 (483)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68889999988887665555544322 1222344322222222 2233345677777878888888888888877777
Q ss_pred HHHH-HHhhcc
Q 042761 327 SEFF-KEQLKS 336 (383)
Q Consensus 327 ~~~l-~~~~~~ 336 (383)
+..+ +|.+++
T Consensus 344 ss~~~~Di~~~ 354 (483)
T PRK09442 344 SSTIIKDLYLN 354 (483)
T ss_pred HHHHHHHHHHH
Confidence 7665 787765
No 59
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.86 E-value=1.8e-06 Score=86.04 Aligned_cols=288 Identities=18% Similarity=0.153 Sum_probs=145.7
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
.|+.+++-..+..+++.+|++ +++.|....+.|+.. ....+..++......+.++... ++.+ ..+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~---r~~~----------~~T 70 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRL---RRSG----------AVT 70 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHH---HHTT------------S
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhh---cccc----------hhh
Confidence 477888888888999999988 567888877778743 2222222222233444444433 3221 269
Q ss_pred HHHHHHHHhchhh--HHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 115 IRTMAQETLGDWG--GTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 115 ~~~~a~~~~G~~~--~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
..|+.++-||+.. +.+..+...+.....+.+...+.+..++..+++|.....++..++......+.|+|.+...+.+-
T Consensus 71 ~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ 150 (406)
T PF00474_consen 71 IPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQ 150 (406)
T ss_dssp HHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT------SHHHHH
T ss_pred hhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 9999999999988 66666655555556666777888999999999988777666655544444456888877666554
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCC--------------CCCCCCCc---Ccchhh-hHHHHHHHhhhccHHHHHHH-h-cC
Q 042761 193 TASMIGLLVAIEVIAVV-VGGWS--------------GLDGSGNW---GKVPAT-IPVIIFSLVYHDLAPVLCAY-L-GG 251 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~-~~~~~--------------~~~~~~~~---~~~~~a-~~i~~fsf~~~~~ip~l~~~-~-~~ 251 (383)
...+++..+++.+.... .++.+ ....+.+. ...... ...+...++... .|..... + .|
T Consensus 151 ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~p~~~qR~~aak 229 (406)
T PF00474_consen 151 GVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFG-APHFWQRFLAAK 229 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHH-H-HHHHHHHSSS
T ss_pred HHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhcc-chHHHHHHHhcC
Confidence 44443332222211111 11110 00011111 111111 111122232222 2554333 3 35
Q ss_pred ChhhHHHHHHHHHHHHHHHHHH------HHHHHhccCCcc-----ccccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHH
Q 042761 252 DLPRLRASVLLGSLIPLLSLLV------WDAISLGLSAQA-----DQVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSL 319 (383)
Q Consensus 252 ~~k~~~~ai~~~~~i~~~~Yi~------~~~~~~g~~~~~-----~~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~ 319 (383)
|+|+.+|+...+.....+++.. ......+..|.. ++.+..... +.+..++++.-++....+.|+.+|.
T Consensus 230 ~~~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~ 309 (406)
T PF00474_consen 230 SPKTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTA 309 (406)
T ss_dssp HHHHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHH
Confidence 7788999877765443333332 111222222211 111112222 2334567777777778888899999
Q ss_pred HHHHHhHHHHH-HHhhcccC
Q 042761 320 IGTLLGFSEFF-KEQLKSLS 338 (383)
Q Consensus 320 ~g~~~~l~~~l-~~~~~~~~ 338 (383)
-+...+....+ +|..++..
T Consensus 310 ~s~l~a~ss~~~~Di~~~~~ 329 (406)
T PF00474_consen 310 DSLLLAISSIFSRDIYKPFI 329 (406)
T ss_dssp HHHHHHHHHHHHHHCCCCCC
T ss_pred HHHHhhhhhhhhHHhhhccc
Confidence 99888888776 77765543
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.86 E-value=8e-06 Score=81.45 Aligned_cols=284 Identities=15% Similarity=0.117 Sum_probs=162.9
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGF-LLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~-~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.|+.+++-..+.++++.+|++ .++.|......|+. +. ...+.+.+ ....+..+.+...+.+ ..
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~ 66 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IG-FYELGALVLLIILGWLFVPIFINNG-------------AY 66 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHcC-------------CC
Confidence 367788888888999999888 46788877777853 22 22222222 2223444444332211 26
Q ss_pred CHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLGD-WGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G~-~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
+..|+.++-||+ ..+.+..+...+.....+.+...+.+..++.++++|.+...++..++......+.|+|.+...+.+-
T Consensus 67 T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ 146 (407)
T TIGR00813 67 TMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQ 146 (407)
T ss_pred chhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHH
Confidence 899999999997 5677777776777777777788889999999999998877766665554445457999888777665
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCCC-------CCC----C-CCcC--------c-ch----hhhHHHHHHHhhhccHHH-H
Q 042761 193 TASMIGLLVAIEVIAVV-VGGWSG-------LDG----S-GNWG--------K-VP----ATIPVIIFSLVYHDLAPV-L 245 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~-~~~~~~-------~~~----~-~~~~--------~-~~----~a~~i~~fsf~~~~~ip~-l 245 (383)
...+++..+++.+.... .++++. ..+ + ..+. . .+ ...|.....+.. -|. .
T Consensus 147 ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~ 223 (407)
T TIGR00813 147 AVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWT---NQVIV 223 (407)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhc---CHHHh
Confidence 55554332222211111 111110 000 0 0000 0 00 011111111111 122 2
Q ss_pred HHHh-cCChhhHHHHHHHHHHHHHHHHHHHH---HHHhccCC----cccc--ccCH---HHH-HhhcCchhHHHHHHHHH
Q 042761 246 CAYL-GGDLPRLRASVLLGSLIPLLSLLVWD---AISLGLSA----QADQ--VIDP---VEL-LMRVRWSGVSVMVEAFS 311 (383)
Q Consensus 246 ~~~~-~~~~k~~~~ai~~~~~i~~~~Yi~~~---~~~~g~~~----~~~~--~~~p---l~~-l~~~~~~~~~~~~~~~~ 311 (383)
++.+ .||.|+.+|+...+......+++++. +......| ..+. ..+| +-. ..+..++++.-++....
T Consensus 224 qR~~a~ks~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~agi 303 (407)
T TIGR00813 224 QRCLAAKSAKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAAI 303 (407)
T ss_pred hHHHhcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHHH
Confidence 3333 46888999998888766655554432 22222232 1110 0122 222 22344667777888888
Q ss_pred HHHHHHHHHHHHHhHHHHH-HHhhccc
Q 042761 312 LMAVGTSLIGTLLGFSEFF-KEQLKSL 337 (383)
Q Consensus 312 ~~al~tS~~g~~~~l~~~l-~~~~~~~ 337 (383)
+.|.+++.-+...+.+..+ +|++++.
T Consensus 304 laA~mST~~s~l~a~ss~~~~Di~~~~ 330 (407)
T TIGR00813 304 LAAVMSTLSSQLNSASTVFTMDLYKKI 330 (407)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 8889999988888888877 7776543
No 61
>PRK09395 actP acetate permease; Provisional
Probab=98.76 E-value=6.7e-05 Score=77.80 Aligned_cols=148 Identities=15% Similarity=0.065 Sum_probs=97.0
Q ss_pred ccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLI-EALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..|+.+++...+.++++.++++ .++.|......|+.. . ...+.+.+... ..+++.+ ++++.+ .
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~-~~~~~~~~g~~~~~~~~~~---~~r~~g----------~ 131 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-L-IYSIGFLVGWPIILFLIAE---RLRNLG----------K 131 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-H-HHHHHHHHHHHHHHHHHHH---HHhhCC----------C
Confidence 3567888888888999999988 567888777778632 2 22222222222 2223333 333321 2
Q ss_pred cCHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLG-DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G-~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.++.|+.++=|| |..+.+..+...+.....+.+-..+.|..++.++++|++.+.++..++....+.+.|+|.+...+.+
T Consensus 132 ~T~~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~i 211 (551)
T PRK09395 132 YTFADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQII 211 (551)
T ss_pred ccHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 689999988888 5678888777666555555566677888899888999887776666555545555799987776665
Q ss_pred HHHHHH
Q 042761 192 LTASMI 197 (383)
Q Consensus 192 ~~~~~i 197 (383)
=..+++
T Consensus 212 Q~iim~ 217 (551)
T PRK09395 212 KAVLLL 217 (551)
T ss_pred HHHHHH
Confidence 444443
No 62
>PRK12488 acetate permease; Provisional
Probab=98.76 E-value=4.6e-05 Score=78.93 Aligned_cols=149 Identities=13% Similarity=0.013 Sum_probs=100.2
Q ss_pred ccCCccHHHHHHHHHhhhhhhhh-hhhHHHhcccCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGI-LALPQKASPAGIFPSSLSLIVCWGFLLI-EALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGI-L~LP~a~~~~G~~~~~~~lll~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
..|+.+++...+.+.++.++++- ++.|......|+. +. ...+.+.+.+. ..+++++-..+.. .
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~-~~~~g~~~g~~~~~~~~a~~lr~~g-------------~ 129 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GL-LYALGVLAGWPIILFLIAERLRNLG-------------K 129 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HH-HHHHHHHHHHHHHHHHHHHHHHHCC-------------C
Confidence 45778999999999999999994 6788877777863 22 22222222222 2233444332221 1
Q ss_pred cCHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLG-DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G-~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.+..|+.++=|| |..+.+..+...+.....+.+-..+.|..++.++++|++.+.++..++....+.+.|+|.+...+.+
T Consensus 130 ~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 130 YTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred cchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 688898887776 6788888887776666666666778899999999999887776665554545545799998777666
Q ss_pred HHHHHHH
Q 042761 192 LTASMIG 198 (383)
Q Consensus 192 ~~~~~i~ 198 (383)
=..++++
T Consensus 210 Q~~im~~ 216 (549)
T PRK12488 210 KAVLLLS 216 (549)
T ss_pred HHHHHHH
Confidence 5555443
No 63
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.76 E-value=1.7e-05 Score=78.31 Aligned_cols=289 Identities=15% Similarity=0.166 Sum_probs=158.6
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCCCCccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIE--INVSLRRGKRKGEEENEF 110 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e--~~~~~~~~~~~~~~~~~~ 110 (383)
.++++.|.+++.+...+..||+| |.+...+....| +.+++.+-+.+++.. +.-++| ++.+++++.+ |++.
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGAiFWMWi~a~~Gm--atk~~E~~La~~yR~~~~----~G~~ 86 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGAIFWMWISALLGM--ATKYAEVTLAQKYREKDE----DGEY 86 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhHHHHHHHHHHHHH--HHHHHHHHHHHHheEECC----CCCE
Confidence 34567899999999999999999 556666666555 355555544444443 344555 4566665321 2233
Q ss_pred cccCHHHHHHHHhch-hhHHHHHHHHHHHHHHHH--HHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 111 EVISIRTMAQETLGD-WGGTLATVFYVFLGYTSM--IAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 111 ~~~~~~~~a~~~~G~-~~~~l~~~~~~~~~~~~~--~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
+ .+..-|.++.+|+ +.+.++.++ .+..++.. ..-.-...+.+++.+++|.++..+++.++.+.++ +.|+|.+.+
T Consensus 87 ~-GGP~yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~vi-~GGikrI~~ 163 (416)
T PF01235_consen 87 R-GGPMYYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALVI-FGGIKRIAK 163 (416)
T ss_pred e-ecHHHHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-HcchhHHHH
Confidence 3 4566677888774 445555554 23333332 2222345566666678888888777777777666 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC------------CCCCCcCcchhh-h------HH--HHHHH-hhhccHHHH
Q 042761 188 FNQWLTASMIGLLVAIEVIAVVVGGWSGL------------DGSGNWGKVPAT-I------PV--IIFSL-VYHDLAPVL 245 (383)
Q Consensus 188 ~~~~~~~~~i~~l~~iiv~~~~~~~~~~~------------~~~~~~~~~~~a-~------~i--~~fsf-~~~~~ip~l 245 (383)
+.+.+++.|.+..++..+..+ ..+.++. .+..-..++..+ + ++ -+||- .+.+..|..
T Consensus 164 v~~~lVP~Ma~~Yi~~~l~ii-~~n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a 242 (416)
T PF01235_consen 164 VSEKLVPFMAILYILGGLIII-IINIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIA 242 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHH
Confidence 999999999877666543222 2222211 111111111111 1 11 13333 244455555
Q ss_pred HHHhc-CCh-hhHH---HHHHHHHHHHHHHHHHHHHHHhccCCccccccC-HH--HHHhhcCchhHHHHHHHHHHHHHHH
Q 042761 246 CAYLG-GDL-PRLR---ASVLLGSLIPLLSLLVWDAISLGLSAQADQVID-PV--ELLMRVRWSGVSVMVEAFSLMAVGT 317 (383)
Q Consensus 246 ~~~~~-~~~-k~~~---~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~-pl--~~l~~~~~~~~~~~~~~~~~~al~t 317 (383)
.+.-+ ++| |+-- -..++++.+++.+-. +.+.+.|.+...++.+. .+ ..++...+++..+++.+..++=-.|
T Consensus 243 ~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~Ta-lvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafT 321 (416)
T PF01235_consen 243 HAAAETDHPVRQGLVQMFEVFIDTIIVCTITA-LVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFT 321 (416)
T ss_pred HHHhcCCCcHHHeeeeeehHhHHHHHHHHHHH-HHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 44332 233 3311 123444433222211 11223444322222221 12 2233333466677777777777789
Q ss_pred HHHHHHHhHHHHHHHhh
Q 042761 318 SLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 318 S~~g~~~~l~~~l~~~~ 334 (383)
|.+++.+=-..+++.++
T Consensus 322 Tilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 322 TILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999888888888877
No 64
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.74 E-value=2.1e-06 Score=85.91 Aligned_cols=310 Identities=12% Similarity=0.019 Sum_probs=153.1
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhh-----hhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGIL-----ALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENE 109 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL-----~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~ 109 (383)
-+|+.+.++.....++.+ |.+ ++.+-+...|....+...++++++....+..++|++..+|..+
T Consensus 46 f~R~fs~~s~fg~sFs~~---g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG-------- 114 (550)
T KOG1289|consen 46 LKREFSLFSIFGISFSLM---GLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG-------- 114 (550)
T ss_pred hhhhhhHHHHHHHHHHHh---cchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--------
Confidence 367788877766555543 222 1222233345443444578888899999999999999999863
Q ss_pred ccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH----HHhHhHhHhh---hCCc-----hh--HHHHHHHHHHHH
Q 042761 110 FEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYC----SKSGEILYHL---LNIP-----ES--VSGFLFTTVFTL 175 (383)
Q Consensus 110 ~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~----~~~g~~l~~~---~~l~-----~~--~~~ii~~l~~~~ 175 (383)
+.+--+.++-|++.+.+..|..-...+...+... ...++.+... .|-+ .. .......++.+.
T Consensus 115 ----gLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~l 190 (550)
T KOG1289|consen 115 ----GLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGL 190 (550)
T ss_pred ----cHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHH
Confidence 4555555555655554444433222222211111 1112221111 1211 11 112222233345
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHH-HHHHHhhcCCCCC----------CCCCCcCcchhh----hHHHHHHHhhhc
Q 042761 176 LISIGGTRATDQFNQWLTASMIGLLVAI-EVIAVVVGGWSGL----------DGSGNWGKVPAT----IPVIIFSLVYHD 240 (383)
Q Consensus 176 ~~~~~g~k~~~~~~~~~~~~~i~~l~~i-iv~~~~~~~~~~~----------~~~~~~~~~~~a----~~i~~fsf~~~~ 240 (383)
++. .+.|.+++++++.+...++.+++. |.+.....+..++ +...+|.....+ +-...+.+.+..
T Consensus 191 ln~-~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyD 269 (550)
T KOG1289|consen 191 LNS-LPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYD 269 (550)
T ss_pred Hhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccC
Confidence 554 699999999998776654433333 2221112221111 123455532112 222334445666
Q ss_pred cHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccc------cccCHHH-HHhh-cCchhHHHHHHHHHH
Q 042761 241 LAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQAD------QVIDPVE-LLMR-VRWSGVSVMVEAFSL 312 (383)
Q Consensus 241 ~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~------~~~~pl~-~l~~-~~~~~~~~~~~~~~~ 312 (383)
.-+.+.+|.++..|+.||+++.+..+..++=-++.+.+....|.+. +..+|.. .+.+ .+.... .++....+
T Consensus 270 a~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~-v~~~~l~i 348 (550)
T KOG1289|consen 270 AAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGA-VFLLSLII 348 (550)
T ss_pred chHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCce-EehhHHHH
Confidence 7777888887667889999988877665543333344455555332 1235643 3333 332222 34444444
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcccCCCCCCCCCCCCcccccccccc--cccC-cchheeeeeecc
Q 042761 313 MAVGTSLIGTLLGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNW--WGRN-KISFTAMAMVVT 375 (383)
Q Consensus 313 ~al~tS~~g~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~r~-~~~~~~~~l~~~ 375 (383)
++++-+-.+...+-+ ++---|.|.+. .| .++-| +|.. |.|.-+.++..+
T Consensus 349 i~~f~~gi~s~~a~S-R~v~afaRDg~---------LP----~S~~~~~v~~~t~~P~nAv~l~~i 400 (550)
T KOG1289|consen 349 IALFFMGISSLTASS-RLVYAFARDGG---------LP----FSKYLAKVNPQTKVPLNAVLLSCI 400 (550)
T ss_pred HHHHHhhHHHHHHHH-HHHhhhhccCC---------CC----CcceeeecCCCCCCcHHHHHHHHH
Confidence 444444444444433 22222333332 22 11122 5555 788877776554
No 65
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.71 E-value=3.2e-05 Score=75.99 Aligned_cols=292 Identities=14% Similarity=0.117 Sum_probs=163.3
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhcCCCCCCccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIE--INVSLRRGKRKGEEENEF 110 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e--~~~~~~~~~~~~~~~~~~ 110 (383)
.+++..|.+++.+...+..||+| |-....+.+-.| +.+++.+=+.+++- .+.-++| ++++++++. ++++.
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGAvFWMWi~Al~G--mat~f~E~~La~~Yr~kd----~~G~~ 130 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGAVFWMWIVALFG--MATKFAESTLAQKYRVKD----KDGEY 130 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-CccHHHHHHHHHHH--HHHHHHHHHHHhheeEeC----CCCCC
Confidence 44667899999999999999999 555555555555 34545443333333 3445666 445666431 13344
Q ss_pred cccCHHHHHHHHhc-hhhHHHHHHHHHHHHHH--HHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 111 EVISIRTMAQETLG-DWGGTLATVFYVFLGYT--SMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 111 ~~~~~~~~a~~~~G-~~~~~l~~~~~~~~~~~--~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
+.... -|.++.+| ||.+.++.+. .+..|+ ....-.-..++.+++.++.|+++..+...++.++++ +.|+|.+.+
T Consensus 131 ~GGP~-yYi~kGl~~r~l~v~FA~~-li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI-~GGi~rIa~ 207 (452)
T COG1115 131 RGGPA-YYIEKGLGMRWLAVLFAFA-LIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVI-FGGIKRIAK 207 (452)
T ss_pred cCChH-HHHHhhcCCcHHHHHHHHH-HHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-HcchHHHHH
Confidence 53344 44566666 6666666633 333444 333344567788888889999888888888878777 489999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCC--------CCCCCcC----cch---------hhhHHHHHHH-hhhccHHHH
Q 042761 188 FNQWLTASMIGLLVAIEVIAVVVGGWSGL--------DGSGNWG----KVP---------ATIPVIIFSL-VYHDLAPVL 245 (383)
Q Consensus 188 ~~~~~~~~~i~~l~~iiv~~~~~~~~~~~--------~~~~~~~----~~~---------~a~~i~~fsf-~~~~~ip~l 245 (383)
+.+..++.|.+..+...+..+. .+.+.. ....++. ++. ..+.=-+||- .+.+..|..
T Consensus 208 v~~~vVPfMA~~Yi~~~~~Ii~-~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~a 286 (452)
T COG1115 208 VSSKVVPFMAILYVLVALVIIV-LNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIA 286 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhH
Confidence 9999999997766655432221 111111 1111111 111 1111123444 244556665
Q ss_pred HHHhc-CCh-hhHHH---HHHHHHHHHHHHHHHHHHHHhccCCcccccc-CHH--HHHhhcCchhHHHHHHHHHHHHHHH
Q 042761 246 CAYLG-GDL-PRLRA---SVLLGSLIPLLSLLVWDAISLGLSAQADQVI-DPV--ELLMRVRWSGVSVMVEAFSLMAVGT 317 (383)
Q Consensus 246 ~~~~~-~~~-k~~~~---ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~-~pl--~~l~~~~~~~~~~~~~~~~~~al~t 317 (383)
.+.-+ ++| |+=-. .+++++.+++-.-. +.+.+.|.+...+..+ ..+ .+++...++|...++.+...+=-.|
T Consensus 287 aAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta-~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafT 365 (452)
T COG1115 287 AAAAKTDHPVKQGLVQMLGVFIDTLVVCTATA-FIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFT 365 (452)
T ss_pred HHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHH-HHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 54431 233 33111 12232222221111 1122334432222111 122 2344445668888888888888899
Q ss_pred HHHHHHHhHHHHHHHhhccc
Q 042761 318 SLIGTLLGFSEFFKEQLKSL 337 (383)
Q Consensus 318 S~~g~~~~l~~~l~~~~~~~ 337 (383)
|.+++.+=-..+++-+++++
T Consensus 366 TIlg~yyyge~~~~fl~~~k 385 (452)
T COG1115 366 TILGWYYYGEKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHHHHHHHHHHhCCc
Confidence 99999887777887777433
No 66
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.69 E-value=0.0001 Score=76.44 Aligned_cols=285 Identities=12% Similarity=0.042 Sum_probs=151.0
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLL-IEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~-~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
.|+.+++.....+.++.+++. .++.|......|+. +.. ..+.+.+.. ...+++++-..+.. ..
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~-~~~g~~~~~~i~~~~~a~~lrr~g-------------~~ 130 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLI-YSLGFLVGWPIILFLIAERLRNLG-------------RY 130 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHH-HHHHHHHHHHHHHHHHHHHHHHcC-------------Cc
Confidence 566777777777888888766 67889877777863 222 112222222 22344454332221 16
Q ss_pred CHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQETLG-DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~~~~G-~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
++.|+.++=|| |..+.+..+...+.....+..-..+.|..++.++++|++...++..++....+.+.|++.+...+.+=
T Consensus 131 T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ 210 (549)
T TIGR02711 131 TFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIK 210 (549)
T ss_pred cHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888876665 66777777666665555556666788889999899998887766655555445457898888776665
Q ss_pred HHHHHHHHHHHHHHHHhh-c-CCCC--------CC------CCCC-cCcchhhhHH-HHHHHhhhccHHHHH-HHh-cCC
Q 042761 193 TASMIGLLVAIEVIAVVV-G-GWSG--------LD------GSGN-WGKVPATIPV-IIFSLVYHDLAPVLC-AYL-GGD 252 (383)
Q Consensus 193 ~~~~i~~l~~iiv~~~~~-~-~~~~--------~~------~~~~-~~~~~~a~~i-~~fsf~~~~~ip~l~-~~~-~~~ 252 (383)
...+++..+++.+..... + ++++ .+ .+.+ ...-+..+.. ....++.. ..|.+. +.+ .||
T Consensus 211 ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~-g~P~~~~R~~taks 289 (549)
T TIGR02711 211 AVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTA-GLPHILMRFFTVSD 289 (549)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhc-CCchhheeeeecCC
Confidence 444433222221111111 1 1110 00 0110 0111112221 11122221 234333 222 468
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH---HHhccCCccc---cc--------cCHHHHHh-hcCchhHHHHHHHHHHHHHHH
Q 042761 253 LPRLRASVLLGSLIPLLSLLVWDA---ISLGLSAQAD---QV--------IDPVELLM-RVRWSGVSVMVEAFSLMAVGT 317 (383)
Q Consensus 253 ~k~~~~ai~~~~~i~~~~Yi~~~~---~~~g~~~~~~---~~--------~~pl~~l~-~~~~~~~~~~~~~~~~~al~t 317 (383)
.|+.+|+..++..+...+|+...+ ......+.+. +. +.....+. ...+.++.-++....+-|+++
T Consensus 290 ~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA~mS 369 (549)
T TIGR02711 290 AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILA 369 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 899999998887766666654322 2221222110 00 11111122 233455555566666667777
Q ss_pred HHHHHHHhHHHHH-HHhhcc
Q 042761 318 SLIGTLLGFSEFF-KEQLKS 336 (383)
Q Consensus 318 S~~g~~~~l~~~l-~~~~~~ 336 (383)
+.-+...+.+..+ +|.+++
T Consensus 370 T~~s~l~a~st~i~~Diy~~ 389 (549)
T TIGR02711 370 VVAGLTLAGASAVSHDLYAN 389 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 7777766666555 677654
No 67
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.65 E-value=0.0004 Score=70.96 Aligned_cols=291 Identities=13% Similarity=0.087 Sum_probs=151.3
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhc-CCCCCCccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFL-LIEALILIEINVSLRR-GKRKGEEENEF 110 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~-~~~~~~l~e~~~~~~~-~~~~~~~~~~~ 110 (383)
...|+.+++-..+.+.++.+++. +++.|......|+... ...++..+. ....+++++-..++.+ +.+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~--~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-------- 102 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSEL--WIAIGLTIGAYINWKFVAPRLRVYTEAAHN-------- 102 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHhhcC--------
Confidence 34577888888888888888877 4568877777786432 122222222 2233444443322221 111
Q ss_pred cccCHHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 111 EVISIRTMAQETLGDW---GGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 111 ~~~~~~~~a~~~~G~~---~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
..+..|+.++-||+. .+.+..+...+.....+..-..+.+..++.++++|.+...++..++....+.+.|+|.+..
T Consensus 103 -~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 103 -SITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred -CccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 268899999989853 3444444443333333344456778888888899988777665554444444578998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcCCCC------------CCCCCCcCcchhhhHHHHHHHhhhccHHHHH-HHh-cCC
Q 042761 188 FNQWLTASMIGLLVAIEVIAVV-VGGWSG------------LDGSGNWGKVPATIPVIIFSLVYHDLAPVLC-AYL-GGD 252 (383)
Q Consensus 188 ~~~~~~~~~i~~l~~iiv~~~~-~~~~~~------------~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~-~~~-~~~ 252 (383)
.+.+-..++++..+++.+.... .+++++ .+...+. ......+...++++... .|.+. +.+ .||
T Consensus 182 TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~p~~~qR~~aaks 259 (487)
T TIGR02121 182 TDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGA-SVIAIISLLAWGLGYFG-QPHIIVRFMAIRS 259 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCC-CHHHHHHHHHHHHHhcc-chHHHHHHHhcCC
Confidence 7666555544332222211111 122111 0111111 11111222222222221 24433 333 367
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHH---HHhccCCccc--cccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHH
Q 042761 253 LPRLRASVLLGSLIPLLSLL---VWDA---ISLGLSAQAD--QVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTL 323 (383)
Q Consensus 253 ~k~~~~ai~~~~~i~~~~Yi---~~~~---~~~g~~~~~~--~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~ 323 (383)
.|+.+|+...+.......++ ++.+ ......|..+ +.+..... ..+..++++.-++....+.|.++|.-+..
T Consensus 260 ~k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST~~s~l 339 (487)
T TIGR02121 260 HKELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMSTISSQL 339 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899887766543222211 1111 1111222111 11111222 22334677777777778888899998888
Q ss_pred HhHHHHH-HHhhccc
Q 042761 324 LGFSEFF-KEQLKSL 337 (383)
Q Consensus 324 ~~l~~~l-~~~~~~~ 337 (383)
.+.+..+ +|.+++.
T Consensus 340 ~s~ss~~~~Diy~~~ 354 (487)
T TIGR02121 340 LVSSSALTEDFYKAF 354 (487)
T ss_pred HHHHHHHHHHHHHHH
Confidence 8888777 7776543
No 68
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.62 E-value=0.00016 Score=73.94 Aligned_cols=153 Identities=13% Similarity=0.043 Sum_probs=99.1
Q ss_pred cCCccHHHHHHHHHhhhhh-hhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIG-SGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIG-aGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
.|+.+.+-..+....+..+ .-++++|......|+......+- .-+..+....+++.-..++.++.+ ..+
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~~~~---------~~T 106 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG-LLIGAFLLWLLFAPRLRRLAKARG---------ATT 106 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccC---------Ccc
Confidence 4666666555566666777 44788999888888743322221 112223333344433333332211 269
Q ss_pred HHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 115 IRTMAQETLG-DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 115 ~~~~a~~~~G-~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
..|+.++-|| +..+.+..+...+....-++.-+.+.+..++..+++++.....+..++......+.|+|.+...+.+=.
T Consensus 107 ~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 107 IPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 9999999999 899999999888888888778888899999888888877666554444444444578888777665544
Q ss_pred HHHHH
Q 042761 194 ASMIG 198 (383)
Q Consensus 194 ~~~i~ 198 (383)
..+.+
T Consensus 187 ~im~i 191 (493)
T COG0591 187 LIMLI 191 (493)
T ss_pred HHHHH
Confidence 44433
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=98.55 E-value=0.00023 Score=70.93 Aligned_cols=190 Identities=13% Similarity=0.015 Sum_probs=104.8
Q ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHH
Q 042761 65 SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMI 144 (383)
Q Consensus 65 ~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ 144 (383)
...+++.++++++++-++......+......|+. .++..++|..||+++..+..+...+...+-..
T Consensus 37 ~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~G--------------~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~a 102 (404)
T PRK11017 37 TGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKTG--------------LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFG 102 (404)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------------cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHH
Confidence 3466666666666655544444444444433321 57888999999999999888777665544433
Q ss_pred HHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCC--CCCCC
Q 042761 145 AYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVV-GGWSGL--DGSGN 221 (383)
Q Consensus 145 ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~-~~~~~~--~~~~~ 221 (383)
.-....+..+++.++.+.....+++.++..+... .|.|.+++++.+..+...+.++...+..... ++++.. ..+.+
T Consensus 103 v~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 181 (404)
T PRK11017 103 VGVAMFAIPVVKATGLDINLLIVLSGLLMTVTAY-FGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAE 181 (404)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCC
Confidence 3333355566666777666655666666555553 6999999999988887765444332211111 111111 11222
Q ss_pred cCcchhhhHHHHHHH-hhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHH
Q 042761 222 WGKVPATIPVIIFSL-VYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLS 270 (383)
Q Consensus 222 ~~~~~~a~~i~~fsf-~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~ 270 (383)
...+..++...+-.+ ....+.|+..++. |++|+......+|..+...+
T Consensus 182 ~~~~~~a~~~~~g~~~~~~~~~~DysRy~-k~~~~~~~~~~lg~~i~~~~ 230 (404)
T PRK11017 182 PLDFSAALTLVVGSFISGGTLTADFVRFG-RSAKIAVLATMVAFFLGNSL 230 (404)
T ss_pred cccHHHHHHHHHHHHHHhHhcCCChHhhc-cCccceeehhHHHHHHHHHH
Confidence 233444444333222 2334556666665 34555444455555444433
No 70
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.50 E-value=0.00054 Score=71.14 Aligned_cols=148 Identities=9% Similarity=0.091 Sum_probs=96.6
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFL-LIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~-~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
...|+.+++.....+.+|.++++ .++.|......|+.... ..+.+.+. .+.+++++....|..
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~--~~~g~~~~~~~~~~~~~p~~rr~~------------- 93 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLA--YLMGWTGGYVLLALLLAPYLRKFG------------- 93 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHH--HHHHHHHHHHHHHHHHHHHHHHCC-------------
Confidence 34677899988888999999887 56788877777763211 11222211 224455555443322
Q ss_pred ccCHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHH
Q 042761 112 VISIRTMAQETLG-DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQ 190 (383)
Q Consensus 112 ~~~~~~~a~~~~G-~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~ 190 (383)
..+..|+-++=|| |..+.+..+...+.....+.+-..+.+..++.++++|++.+.++..++....+.+.|+|.+...+.
T Consensus 94 ~~T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~ 173 (552)
T TIGR03648 94 KYTVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGMKGVTWTQV 173 (552)
T ss_pred CccHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1688898888887 446777776666555555556667788888888899988777666655554554578988876665
Q ss_pred HHHHHH
Q 042761 191 WLTASM 196 (383)
Q Consensus 191 ~~~~~~ 196 (383)
+=...+
T Consensus 174 iQ~iim 179 (552)
T TIGR03648 174 AQYIVL 179 (552)
T ss_pred HHHHHH
Confidence 544444
No 71
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.46 E-value=0.0003 Score=71.00 Aligned_cols=222 Identities=10% Similarity=0.037 Sum_probs=112.2
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKAS--PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFE 111 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~--~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~ 111 (383)
.++|+.++++...+-++..+...-+....... ..++..+++.++++.++......+......|+.
T Consensus 9 ~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G------------- 75 (442)
T TIGR00800 9 EEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG------------- 75 (442)
T ss_pred cccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC-------------
Confidence 33455566666666555555544443333222 255666666666665555555555555554432
Q ss_pred ccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh----CC----c------hhHHHHHHHHHHHHHH
Q 042761 112 VISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL----NI----P------ESVSGFLFTTVFTLLI 177 (383)
Q Consensus 112 ~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~----~l----~------~~~~~ii~~l~~~~~~ 177 (383)
.++..+.|..||+++..+..++..+...+-...-....++.+...+ +. + ...+.+++.++...+.
T Consensus 76 -l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~ 154 (442)
T TIGR00800 76 -LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFL 154 (442)
T ss_pred -CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999999888887766655554445555444433 21 1 1233334444433333
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCC------CCCcCcchhhhHHHHHHH-hhhccHHHHHHHh
Q 042761 178 SIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG-LDG------SGNWGKVPATIPVIIFSL-VYHDLAPVLCAYL 249 (383)
Q Consensus 178 ~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~-~~~------~~~~~~~~~a~~i~~fsf-~~~~~ip~l~~~~ 249 (383)
.+.|.|...+.+....+..++.+..++.......+... ... +.....+..++...+-.+ ....+.|+..++.
T Consensus 155 ~~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~ 234 (442)
T TIGR00800 155 FFFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG 234 (442)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc
Confidence 34566666666666555544444333211111111111 111 111222333333322222 3445677887777
Q ss_pred cCChhhHHHHHHHHHHHHHHH
Q 042761 250 GGDLPRLRASVLLGSLIPLLS 270 (383)
Q Consensus 250 ~~~~k~~~~ai~~~~~i~~~~ 270 (383)
+ ++|+..+....+.....+.
T Consensus 235 ~-~~~~~~~~~~~~~~~~~~~ 254 (442)
T TIGR00800 235 K-SKKTAIWGQFLALPGGFTL 254 (442)
T ss_pred C-CccchHHHHHHHHHHHHHH
Confidence 4 4444444455555544433
No 72
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.40 E-value=0.00062 Score=67.73 Aligned_cols=274 Identities=14% Similarity=0.174 Sum_probs=143.0
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhc---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKAS---PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~---~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
...-..+.+++.--|||=+-.|-.+. ..-|+++.+..++.++..-..+.. +.. ..+ .+++
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvi----a~~-~~~------------~~~~ 66 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVI----AVA-KSG------------GGIE 66 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH----HHh-hcC------------CCHH
Confidence 34455667999999999777776543 344555555555544332222211 111 111 3788
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHH--------HHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTS--------MIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~--------~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
+++++.-.+++..+....+. +.|- .++|-.+....+..--+++.....++|..+.-.+. +.+-|-++++
T Consensus 67 ~l~~~v~~~f~~if~~~i~l--~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~-~~p~kivd~i 143 (427)
T PF05525_consen 67 DLASRVGPKFALIFTILIYL--SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLS-LNPSKIVDRI 143 (427)
T ss_pred HHhcccCcHHHHHHHHHHHH--HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHH-hchhhHHHHH
Confidence 88776654444444333322 2221 22333333333221001222333444444333333 3677999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-----c-CcchhhhHH--HHHHHhhhccHH-HHHHHhcCChhhHHHH
Q 042761 189 NQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGN-----W-GKVPATIPV--IIFSLVYHDLAP-VLCAYLGGDLPRLRAS 259 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~~~~~~~~~~~~~-----~-~~~~~a~~i--~~fsf~~~~~ip-~l~~~~~~~~k~~~~a 259 (383)
.+++|+.+++.++++++.++..+..+..+.... + .++....-+ ...+..+..++- ++.+.-.+|+|+..|.
T Consensus 144 Gk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~k~~~~~ 223 (427)
T PF05525_consen 144 GKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDKKEIKKY 223 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999998888777765555443222111100 0 122222111 233333333332 2322222455655554
Q ss_pred HHH----HHHHHHHHHHHHHHHHhccCCccc--ccc---CHHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042761 260 VLL----GSLIPLLSLLVWDAISLGLSAQAD--QVI---DPVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEF 329 (383)
Q Consensus 260 i~~----~~~i~~~~Yi~~~~~~~g~~~~~~--~~~---~pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~ 329 (383)
... +...-.++|.... .+|...... +.+ +.+..+.+ ..++....+..+...+|++|+-+|..-+..|+
T Consensus 224 ~~~ag~ia~~lL~~IY~gL~--~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~y 301 (427)
T PF05525_consen 224 TIKAGLIAGILLALIYGGLA--YLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEY 301 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 3344445665543 355443322 111 22333333 34566778999999999999999999999999
Q ss_pred HHHhhc
Q 042761 330 FKEQLK 335 (383)
Q Consensus 330 l~~~~~ 335 (383)
+++.++
T Consensus 302 f~~~~~ 307 (427)
T PF05525_consen 302 FSELFP 307 (427)
T ss_pred HHHHhc
Confidence 999887
No 73
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.40 E-value=0.00034 Score=69.62 Aligned_cols=158 Identities=13% Similarity=0.133 Sum_probs=100.4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
+=..++|..||.+++++..+..++.+.|-.......+++...+..++|.+++.+++.++...... .|.|.+.+++++.+
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~~ili~g~l~~l~~i-fG~r~l~~l~~~a~ 160 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIGVLMTLVTI-FGYRALHKLERIAV 160 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 33456799999999999999998888887777666666643333567888877777766665564 69999999999999
Q ss_pred HHHHHHHHHHHHHHHh-hcCCCC--CCCCCCcCcchhhhHHHHHHHh-hhccHHHHHHHhcCChh--hHHHHHHHHHHHH
Q 042761 194 ASMIGLLVAIEVIAVV-VGGWSG--LDGSGNWGKVPATIPVIIFSLV-YHDLAPVLCAYLGGDLP--RLRASVLLGSLIP 267 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~-~~~~~~--~~~~~~~~~~~~a~~i~~fsf~-~~~~ip~l~~~~~~~~k--~~~~ai~~~~~i~ 267 (383)
+.+..++...+..... ....+. ...+.++..+..++...+-++. +-...++..++.+ ++| |.-.+...|..+.
T Consensus 161 ~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~-~~t~~~~~~~~~~G~~l~ 239 (442)
T COG1457 161 PLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP-SPTPSKAFLAAVLGFFLG 239 (442)
T ss_pred HHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC-CCchHHHHHHHHHHHHHH
Confidence 8887666554422111 111111 1235666666666666554443 3344566666664 334 5555555666655
Q ss_pred HHHHHH
Q 042761 268 LLSLLV 273 (383)
Q Consensus 268 ~~~Yi~ 273 (383)
..+-.+
T Consensus 240 ~~~~~i 245 (442)
T COG1457 240 TSFMMI 245 (442)
T ss_pred HHHHHH
Confidence 544333
No 74
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.38 E-value=0.0041 Score=63.83 Aligned_cols=153 Identities=8% Similarity=-0.027 Sum_probs=91.3
Q ss_pred cccCCccHHHHHHHHHhhhhhhhh-hhhHHHhcccCcHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhc--CCCCCCcccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGI-LALPQKASPAGIFPSSLSLIVCWGFLLIEA-LILIEINVSLRR--GKRKGEEENE 109 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGI-L~LP~a~~~~G~~~~~~~lll~~~~~~~~~-~~l~e~~~~~~~--~~~~~~~~~~ 109 (383)
...|+.+++-..+.+..+.+++.. ++.|......|+.. ....+...+..... ..+..-. +.+. +.+
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~--~~~~~~~~~~~~l~~~~~~~~l-~~~~~~~~~------- 106 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE--SWIAIGLTLGAWINWKLVAGRL-RVHTEYNNN------- 106 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH--HHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcC-------
Confidence 446788999888889999999995 57888877888642 11222222222211 1222111 1111 111
Q ss_pred ccccCHHHHHHHHhchh---hHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHH
Q 042761 110 FEVISIRTMAQETLGDW---GGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 110 ~~~~~~~~~a~~~~G~~---~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
..+..|+.++=||+. .+.+..+...+.....+.+-..+.+..++.++++|.+.+.++..++...-..+.|+|.+.
T Consensus 107 --~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 107 --ALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred --ceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 258889888888853 444444444444333334445567888888889998877666555444444457999888
Q ss_pred HHHHHHHHHHHH
Q 042761 187 QFNQWLTASMIG 198 (383)
Q Consensus 187 ~~~~~~~~~~i~ 198 (383)
..+.+=...+++
T Consensus 185 ~TD~iQ~~imi~ 196 (502)
T PRK15419 185 WTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHH
Confidence 877665555543
No 75
>PRK11375 allantoin permease; Provisional
Probab=98.37 E-value=0.0004 Score=70.82 Aligned_cols=283 Identities=11% Similarity=0.078 Sum_probs=137.4
Q ss_pred hhcccCCccHHHHHHHHHhhh-------hhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 042761 32 IKNDQEKGTIAGAVALIIGTS-------IGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKG 104 (383)
Q Consensus 32 ~~~~~~~~s~~~~~~~iigti-------IGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~ 104 (383)
...++|+-++++...+=++.. +++|.++ ...+++.+++.++++-++....+.+......+++
T Consensus 20 vp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~-----~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~G------ 88 (484)
T PRK11375 20 KTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI-----LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYG------ 88 (484)
T ss_pred CCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH-----ccchHHHHHHHHHHHHHHHHHHHHHhcccccccC------
Confidence 334455556555555444333 3334331 3455556666665555444444444444433322
Q ss_pred CccccccccCHHHHHHHHhchhhHHHHHHHHH-HHHHHHHHHHHHHhHhH----hHhhh-------------CCc--hhH
Q 042761 105 EEENEFEVISIRTMAQETLGDWGGTLATVFYV-FLGYTSMIAYCSKSGEI----LYHLL-------------NIP--ESV 164 (383)
Q Consensus 105 ~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~-~~~~~~~~ay~~~~g~~----l~~~~-------------~l~--~~~ 164 (383)
.++..+.|..||+++..+..+... +...+-...-....|+. ++.++ +++ ...
T Consensus 89 --------l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i 160 (484)
T PRK11375 89 --------VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLI 160 (484)
T ss_pred --------CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHH
Confidence 478889999999999888777763 23222211111222232 22322 111 123
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC--CCCCC-------cCcchhhhHHHHHH
Q 042761 165 SGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSGL--DGSGN-------WGKVPATIPVIIFS 235 (383)
Q Consensus 165 ~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~--~~~~~-------~~~~~~a~~i~~fs 235 (383)
+.+++.++..++. +.|.|.+++++.+..+...+.++.+.+..+...+.+.. ..+.+ ...+..++...+-+
T Consensus 161 ~~~i~~~l~~~~~-~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~ 239 (484)
T PRK11375 161 TFLIFWLVNVGIG-FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAV 239 (484)
T ss_pred HHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHH
Confidence 3345555544444 36999999999888887765444443222222232211 11111 11222333333334
Q ss_pred Hh-hhccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHH-hccC-CccccccCHHHHHhhcCchhHHHHHHHHHH
Q 042761 236 LV-YHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAIS-LGLS-AQADQVIDPVELLMRVRWSGVSVMVEAFSL 312 (383)
Q Consensus 236 f~-~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~-~g~~-~~~~~~~~pl~~l~~~~~~~~~~~~~~~~~ 312 (383)
|. ...+.|...++. |++|+..++-.++..+...+........ .+.. -..+...||.+.+.+........+..+..+
T Consensus 240 ~~~~~~~~~D~tRy~-k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v 318 (484)
T PRK11375 240 WAAPAVSASDFTQNA-HSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVIL 318 (484)
T ss_pred HHHHHccccchhccc-CChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHH
Confidence 43 223567777766 4666666666666655544432222211 1111 011223578776654322333444444555
Q ss_pred HHHHHH-HHHHHHhHHHHHHHhhc
Q 042761 313 MAVGTS-LIGTLLGFSEFFKEQLK 335 (383)
Q Consensus 313 ~al~tS-~~g~~~~l~~~l~~~~~ 335 (383)
++..++ ...+.++-..-+.+++.
T Consensus 319 ~a~~~tN~~~N~ys~~~~l~~l~p 342 (484)
T PRK11375 319 MTTISTNATGNIIPAGYQIAALAP 342 (484)
T ss_pred HHHHHHHHHhhcccHHHHHHHhCc
Confidence 555444 44666766666666664
No 76
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.29 E-value=0.0017 Score=64.35 Aligned_cols=245 Identities=12% Similarity=0.074 Sum_probs=131.1
Q ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Q 042761 67 AGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAY 146 (383)
Q Consensus 67 ~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay 146 (383)
.++..+++.++++-++......+......|+. .++.-++|..||+++..+..+...+...+-...-
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~G--------------l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~ 91 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADTG--------------LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVM 91 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC--------------cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHH
Confidence 45566666666655554444444444433321 4788899999999999988888777665554444
Q ss_pred HHHhHhHhHhhhC----C-chhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CCCCC
Q 042761 147 CSKSGEILYHLLN----I-PESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG-LDGSG 220 (383)
Q Consensus 147 ~~~~g~~l~~~~~----l-~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~-~~~~~ 220 (383)
....++.++..++ . +......++.++..... +.|.|.+++++.+..+.+.+..+.+........+... .+.+.
T Consensus 92 ~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 170 (386)
T TIGR02358 92 IIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWL-LSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRAG 170 (386)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCCC
Confidence 4455666655542 1 22233333333333334 3699999999999888776655444322222222111 11122
Q ss_pred CcCcchhhhHHHHHH-HhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCHHHHHhhcC
Q 042761 221 NWGKVPATIPVIIFS-LVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMRVR 299 (383)
Q Consensus 221 ~~~~~~~a~~i~~fs-f~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl~~l~~~~ 299 (383)
+ ..+..+....+-. -.+....|+..++. |++|+.-++..+|..+...+..+.........+. .||.+.+.+.+
T Consensus 171 ~-~s~~~~~~~~~~~~~swa~~~~DysRy~-k~~~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~----~d~~~~~~~~g 244 (386)
T TIGR02358 171 D-MSFAVAVELVIAMPLSWLPLIADYTRFA-RNPRHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ----TDIISILAGAG 244 (386)
T ss_pred C-ccHHHHHHHHHHHHHHHHHHccchhhhc-CCCcceehHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHhcc
Confidence 2 2222222222211 12333456776765 4667777777777777766655554433222221 36665554322
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q 042761 300 WSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLK 335 (383)
Q Consensus 300 ~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~ 335 (383)
. ..+..+..+++..++-..+.++-...+.++++
T Consensus 245 ~---~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 245 L---GIPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred H---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12333444555556666677777766666663
No 77
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.27 E-value=0.0018 Score=64.05 Aligned_cols=287 Identities=20% Similarity=0.220 Sum_probs=142.2
Q ss_pred CCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 37 EKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
+-.|-.+-++..+|+.||-| |=--|+..++.|-..-++..+ ...+..-.-.+++|...-.+.++. ...+|
T Consensus 7 ~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yl-i~~l~~GiPlli~Ef~iGr~~~~~--------~~~a~ 77 (439)
T COG0733 7 QWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYL-IFLLLVGIPLLLAEFAIGRRGRKN--------AVGAF 77 (439)
T ss_pred chhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHH-HHHHHHhHHHHHHHHHhhhhcCCC--------hhHHH
Confidence 34677888999999999999 778999988888543333333 334445566788887642222110 01244
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhH------------------hHhhhC---C-ch--hHHHHHHHH
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEI------------------LYHLLN---I-PE--SVSGFLFTT 171 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~------------------l~~~~~---l-~~--~~~~ii~~l 171 (383)
.+... +|++.++-.+ -....+..+.-|.+..|=. ..+.+. - +. -.+..++++
T Consensus 78 ~~l~~---~~~~~~~G~~-gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 153 (439)
T COG0733 78 RKLAP---KKKWEWIGWF-GVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLV 153 (439)
T ss_pred HHhcc---CccchhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 44432 3433322222 1111222222222222111 122220 1 11 122234444
Q ss_pred HHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CC-----C---CCCCcCcchhhhHHHHHHHh-hhc
Q 042761 172 VFTLLISIGGTRA-TDQFNQWLTASMIGLLVAIEVIAVVVGGWS-GL-----D---GSGNWGKVPATIPVIIFSLV-YHD 240 (383)
Q Consensus 172 ~~~~~~~~~g~k~-~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~-~~-----~---~~~~~~~~~~a~~i~~fsf~-~~~ 240 (383)
+...++ .+|+|+ ++|.|.++.+.+.+.++.+++.+...++.. .. + .-.+++....+++-.+|+.. +.+
T Consensus 154 lt~~iv-~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g 232 (439)
T COG0733 154 LTALIV-SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFG 232 (439)
T ss_pred HHHHHH-HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHH
Confidence 433344 468766 999999999998877777665444333321 10 0 11223445677888888874 444
Q ss_pred cHHHHHHHhcCChhhHHHHH-HHHHHHHHHHH----HHH-HHHHhccCCccc-cc--cCHHHHHhhcC-chhHHHHHHHH
Q 042761 241 LAPVLCAYLGGDLPRLRASV-LLGSLIPLLSL----LVW-DAISLGLSAQAD-QV--IDPVELLMRVR-WSGVSVMVEAF 310 (383)
Q Consensus 241 ~ip~l~~~~~~~~k~~~~ai-~~~~~i~~~~Y----i~~-~~~~~g~~~~~~-~~--~~pl~~l~~~~-~~~~~~~~~~~ 310 (383)
.+-+..++++ +++++++.- ..+..=..+-. .++ ....+|.-+.+. .. ....+.+.+.+ +..++.+.-+.
T Consensus 233 ~mitYsSYL~-k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~ 311 (439)
T COG0733 233 IMITYSSYLS-KKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLL 311 (439)
T ss_pred HHHHHHhhcC-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHH
Confidence 5556667774 555666532 22222111100 111 112233222211 00 01112222222 33344555555
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 311 SLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 311 ~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
.++|-+||.++..=.....+.|.++.++
T Consensus 312 l~fAalTS~iSmlE~~va~l~~~~~~~R 339 (439)
T COG0733 312 LLFAALTSAISMLEVLVAALIDKFGISR 339 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcch
Confidence 6677788888877777777777776554
No 78
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.27 E-value=0.00086 Score=66.75 Aligned_cols=275 Identities=15% Similarity=0.160 Sum_probs=139.2
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhc-c--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKAS-P--AGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~-~--~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
..+...+.+++.--|||=+-.|-.+. + .-|+++.+..++.++..-. +.-.+.. ..+ .+++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPl----Lgiiava-~~~------------g~~~ 71 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPV----LTVVALA-KVG------------GGVD 71 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHh-hcC------------CCHH
Confidence 45567778999999999777776543 3 3344454444444332211 1111111 111 3788
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHH--------HHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSM--------IAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~--------~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
+++++.-.+++..+....+. +.|-+ ++|-.+....+++. +.+..+..++|..+.-.+. +++-|-++++
T Consensus 72 ~l~~rv~~~f~~~f~~~i~l--~IGP~~aiPRtaavsfEm~i~p~~~~~-~~~~~ifs~iFF~i~~~l~-l~p~klvd~i 147 (439)
T PRK15433 72 SLSTPIGKVAGVLLATVCYL--AVGPLFATPRTATVSFEVGIAPLTGDS-ALPLFIYSLVYFAIVILVS-LYPGKLLDTV 147 (439)
T ss_pred HHhhhcchHHHHHHHHHHHH--HHhhccccCCccccchhheeeccCCcc-cHHHHHHHHHHHHHHHHHH-cChhhHHHHh
Confidence 88876654443333333222 22211 22322222222210 0122223333333322233 3677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCc------CcchhhhHH--HHHHHhhhccH-HHHHHHhcCChhhHHHH
Q 042761 189 NQWLTASMIGLLVAIEVIAVVVGGWSGLDGSGNW------GKVPATIPV--IIFSLVYHDLA-PVLCAYLGGDLPRLRAS 259 (383)
Q Consensus 189 ~~~~~~~~i~~l~~iiv~~~~~~~~~~~~~~~~~------~~~~~a~~i--~~fsf~~~~~i-p~l~~~~~~~~k~~~~a 259 (383)
.+++++.+++.++++++.++..+..+..+...+. .++....-+ ..-|..+-.++ -++.+.--+|+|+..|.
T Consensus 148 GK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~~~~~k~ 227 (439)
T PRK15433 148 GNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRY 227 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999988777776555554322211110111 111111111 22222222222 23322211355555544
Q ss_pred H----HHHHHHHHHHHHHHHHHHhccCCcc--ccccC----HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 042761 260 V----LLGSLIPLLSLLVWDAISLGLSAQA--DQVID----PVELLMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEF 329 (383)
Q Consensus 260 i----~~~~~i~~~~Yi~~~~~~~g~~~~~--~~~~~----pl~~l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~ 329 (383)
. .++...-.++|....+ +|..... ++.++ |........+++...+..+...+|++|+.+|...++.|+
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~--lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~ 305 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFR--LGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEF 305 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 3344444566655433 5544322 11112 223333445777889999999999999999999999999
Q ss_pred HHHhhccc
Q 042761 330 FKEQLKSL 337 (383)
Q Consensus 330 l~~~~~~~ 337 (383)
+++.++.+
T Consensus 306 f~~~~~is 313 (439)
T PRK15433 306 FAQYVPLS 313 (439)
T ss_pred HHhhcCCc
Confidence 99887533
No 79
>PRK10484 putative transporter; Provisional
Probab=98.24 E-value=0.0065 Score=62.71 Aligned_cols=289 Identities=16% Similarity=0.133 Sum_probs=138.8
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
...|+.+++-..+.+..|.++++ .++.|......|+... ...........+.++.++.- +++. + .
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~~~~~~~~~~~~~~~~~~p~---~~r~-~---------~ 100 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-AWEVTAAIALIILALIFLPR---YLKS-G---------I 100 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-HHHHHHHHHHHHHHHHHHHH---HHhc-C---------C
Confidence 34688899988888999999888 4678887777786321 11111111112233334332 2222 1 2
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHH-HHHHHHHHhHhHhHh------hhCCchhHHHHHH----HHHHHHHHHhcc
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYT-SMIAYCSKSGEILYH------LLNIPESVSGFLF----TTVFTLLISIGG 181 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~-~~~ay~~~~g~~l~~------~~~l~~~~~~ii~----~l~~~~~~~~~g 181 (383)
.+..|+.++-||+..+.+......+.... .+.....+.+..++. .+++|+.....+. .++....+.+.|
T Consensus 101 ~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GG 180 (523)
T PRK10484 101 TTIPDFLEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGG 180 (523)
T ss_pred ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 68999999999987777666554432221 112222222333333 3466665443322 112122233468
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHh-hcC------CC--------CCCCCC-CcC-cchh-h-hHHHHHHHhhhccH
Q 042761 182 TRATDQFNQWLTASMIGLLVAIEVIAVV-VGG------WS--------GLDGSG-NWG-KVPA-T-IPVIIFSLVYHDLA 242 (383)
Q Consensus 182 ~k~~~~~~~~~~~~~i~~l~~iiv~~~~-~~~------~~--------~~~~~~-~~~-~~~~-a-~~i~~fsf~~~~~i 242 (383)
+|.+...+.+=...+++..+++.+.... .++ .+ ....+. +.. ..+. . .......+.+...-
T Consensus 181 l~aV~~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (523)
T PRK10484 181 LKAVAVSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTN 260 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCC
Confidence 8888777665544443332222111111 111 00 011000 000 0011 1 11111111111112
Q ss_pred HHH-HHHh-cCChhhHHHHHHHHHHHHHHHHHHH---HHHHhccCCcc-ccccCHHH-HHhhcCchhHHHHHHHHHHHHH
Q 042761 243 PVL-CAYL-GGDLPRLRASVLLGSLIPLLSLLVW---DAISLGLSAQA-DQVIDPVE-LLMRVRWSGVSVMVEAFSLMAV 315 (383)
Q Consensus 243 p~l-~~~~-~~~~k~~~~ai~~~~~i~~~~Yi~~---~~~~~g~~~~~-~~~~~pl~-~l~~~~~~~~~~~~~~~~~~al 315 (383)
|.+ ++.+ .||.|+.+|+...+.....+++..+ .+......|.+ ++.|+..- ...+..++++.-++....+-|.
T Consensus 261 q~~~qR~~aak~~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~ 340 (523)
T PRK10484 261 QSIVQRALGAKNLAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAI 340 (523)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHH
Confidence 333 3333 4688899998887765544443332 22222233431 11111121 2223345666666777777778
Q ss_pred HHHHHHHHHhHHHHH-HHhhcc
Q 042761 316 GTSLIGTLLGFSEFF-KEQLKS 336 (383)
Q Consensus 316 ~tS~~g~~~~l~~~l-~~~~~~ 336 (383)
++|.-+...+.+..+ +|..++
T Consensus 341 mST~~s~l~s~st~~t~Diy~~ 362 (523)
T PRK10484 341 LSTFNGFLNSASTLFSLDIYKP 362 (523)
T ss_pred HHHHHHHHHHHHHHHHHHhhhh
Confidence 888877777777665 676654
No 80
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=98.14 E-value=0.0073 Score=58.08 Aligned_cols=289 Identities=16% Similarity=0.119 Sum_probs=158.8
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLI-EALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
+|+.+..-..+....|-+++. ..+.|.+..+.|..+ .++...-+-+.+ +--.+.+-..+..++- ..-
T Consensus 38 nRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~---------nAl 106 (473)
T COG4145 38 NRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREY---------NAL 106 (473)
T ss_pred cCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHh---------CCe
Confidence 466676777778888888887 567899888887543 222111111111 1112222222222211 115
Q ss_pred CHHHHHH-HHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q 042761 114 SIRTMAQ-ETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWL 192 (383)
Q Consensus 114 ~~~~~a~-~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~ 192 (383)
+..|+-+ ++=+++..++.++...+.+.+.+++-..+.++.++...++++..+.++|....+.-..+.|.|.+..-..+=
T Consensus 107 tI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQ 186 (473)
T COG4145 107 TINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQ 186 (473)
T ss_pred eHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcceeeeehHHHHH
Confidence 6777775 567888899999999999999999989999999999999999999888887767666667777654433332
Q ss_pred HHHH----HHHHHHHHHHHHhhcCCC-------CCC----CCCCcCc-chhhhHHHHHHHhhhcc--HHHHH-HHh-cCC
Q 042761 193 TASM----IGLLVAIEVIAVVVGGWS-------GLD----GSGNWGK-VPATIPVIIFSLVYHDL--APVLC-AYL-GGD 252 (383)
Q Consensus 193 ~~~~----i~~l~~iiv~~~~~~~~~-------~~~----~~~~~~~-~~~a~~i~~fsf~~~~~--ip~l~-~~~-~~~ 252 (383)
-..| +++++.++ ...++.+ +.+ .|.+... .-..+-..++-..|.+. .|... +-+ -||
T Consensus 187 G~vmligtv~Lf~~~i---~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD 263 (473)
T COG4145 187 GLVMLIGTVVLFVGVI---YAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD 263 (473)
T ss_pred HHHHHHHHHHHHHHHH---HhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc
Confidence 2222 22222222 1111211 111 1222221 11111111222223332 35433 333 267
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH-HHhc--cCCccccccCHHHHHh-hcCchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 042761 253 LPRLRASVLLGSLIPLLSLLVWDA-ISLG--LSAQADQVIDPVELLM-RVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSE 328 (383)
Q Consensus 253 ~k~~~~ai~~~~~i~~~~Yi~~~~-~~~g--~~~~~~~~~~pl~~l~-~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~ 328 (383)
.|.+.+.+.++..++.++-+.... ..+| ..|.-...|..+-.++ ..-++...-+.-.-++-|++++..+..+-.+.
T Consensus 264 skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~ss 343 (473)
T COG4145 264 SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSS 343 (473)
T ss_pred hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999998877766544322 2333 2232111121111121 23345555566667777888888776554443
Q ss_pred -HHHHhhcccC
Q 042761 329 -FFKEQLKSLS 338 (383)
Q Consensus 329 -~l~~~~~~~~ 338 (383)
.+||++.+..
T Consensus 344 tliKdLy~~~~ 354 (473)
T COG4145 344 TLIKDLYLNVR 354 (473)
T ss_pred HHHHHHHHHHH
Confidence 4488876553
No 81
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.03 E-value=0.003 Score=61.89 Aligned_cols=243 Identities=16% Similarity=0.090 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc
Q 042761 82 FLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP 161 (383)
Q Consensus 82 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~ 161 (383)
++....+.+-|.+.|+....| .+..|..++.+||+..+...+...+.......+...+.+.-++.++++|
T Consensus 21 l~~~~~~~~q~~~~R~~~~Tg----------~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~ 90 (358)
T PF01566_consen 21 LSNLLKYVFQEMAARLGIVTG----------KGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIP 90 (358)
T ss_pred HHHHHHHHHHHHHHHHhhhcC----------CChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 445566677777777654322 4788888899999988888887777666666676777777777666788
Q ss_pred hhHHHHHHHHHHHHHHH--hcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC----CCCCC--CcCcchhhhHHHH
Q 042761 162 ESVSGFLFTTVFTLLIS--IGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG----LDGSG--NWGKVPATIPVII 233 (383)
Q Consensus 162 ~~~~~ii~~l~~~~~~~--~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~----~~~~~--~~~~~~~a~~i~~ 233 (383)
.+.+.++..+....+.+ ..+.|.++++...++..+.+.++... ....+++.. ...|. +.......++++=
T Consensus 91 ~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~--~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiG 168 (358)
T PF01566_consen 91 LWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAA--FIVHPDWGEVARGLVVPSIPGPGSLLFAVALIG 168 (358)
T ss_pred cHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHH--HhcchhHHHHhhhccCCCCcchhHHHHHHHHHH
Confidence 77666555544333332 24667777777666666644443322 122344322 11011 1122222222211
Q ss_pred HHHhhhcc--HHHHHHHhcCCh----hh-HHHHHHHHHHHHHHHHHHHH-------HHHhccCCccccccCH---HHHHh
Q 042761 234 FSLVYHDL--APVLCAYLGGDL----PR-LRASVLLGSLIPLLSLLVWD-------AISLGLSAQADQVIDP---VELLM 296 (383)
Q Consensus 234 fsf~~~~~--ip~l~~~~~~~~----k~-~~~ai~~~~~i~~~~Yi~~~-------~~~~g~~~~~~~~~~p---l~~l~ 296 (383)
...+-|.. -++...+-+.++ ++ ..|....+..+..++..+++ ..++. +...+.++. .+.++
T Consensus 169 ttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~--~~~~~~~~~~~~~~~L~ 246 (358)
T PF01566_consen 169 TTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLY--PGGSEVETAAQAAQALE 246 (358)
T ss_pred HhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccccchhhHHHHHHHHH
Confidence 11111111 112222211111 11 11222222222222222211 11221 322222332 23344
Q ss_pred hcCc-hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 297 RVRW-SGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 297 ~~~~-~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
...+ +|...+..+..+.+..+|.+....+-.-.+.|.++.+.
T Consensus 247 ~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~ 289 (358)
T PF01566_consen 247 PLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRW 289 (358)
T ss_pred HhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCC
Confidence 4445 68888899999999999999988888877788776543
No 82
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.97 E-value=0.0029 Score=62.64 Aligned_cols=263 Identities=14% Similarity=0.122 Sum_probs=148.6
Q ss_pred hhhhHHHhcccCcHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCCCCCCccccccccCHHHHH-HHHhchhhHHHHHHH
Q 042761 57 ILALPQKASPAGIFPSSLSLIVCWGFLLI-EALILIEINVSLRRGKRKGEEENEFEVISIRTMA-QETLGDWGGTLATVF 134 (383)
Q Consensus 57 IL~LP~a~~~~G~~~~~~~lll~~~~~~~-~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~G~~~~~l~~~~ 134 (383)
.+.++....-.|. .+. ...++|...+. ..++++|-..++.+ .++.|+. +++--+..|.+..+.
T Consensus 62 flGiag~I~~~GY-dG~-~Y~iG~~~Gy~i~~fL~A~~LRk~Gk-------------yT~aD~~a~Ry~~~~~R~~aa~~ 126 (529)
T COG4147 62 FLGIAGLIFISGY-DGL-IYSIGWTGGYPILLFLIAEYLRKLGK-------------YTFADFIADRYKSNPARLLAAIG 126 (529)
T ss_pred hhchhHhhhhccc-chH-HHHHHHHHHHHHHHHHHHHHHHhcCC-------------cchHHHHHHHHhcchhhHHHHHH
Confidence 3444444444443 222 23344443333 45566665544433 5777765 566678889998888
Q ss_pred HHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh--cC
Q 042761 135 YVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVV--GG 212 (383)
Q Consensus 135 ~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~--~~ 212 (383)
-.+..+..+++-+.+.|..+..++++|+.++.++-.++....+.+.|+|.+.+.+-+=...++...+.+.++.... ++
T Consensus 127 ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~ 206 (529)
T COG4147 127 TIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGN 206 (529)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8888877788888999999999999998877655554444444458999999987665555555444443222211 11
Q ss_pred CCC-------CC---------CCCCcC-cchhhhHHHHHHHh-hhccHHHHH-HHh-cCChhhHHHHHHHHHHHHHHHHH
Q 042761 213 WSG-------LD---------GSGNWG-KVPATIPVIIFSLV-YHDLAPVLC-AYL-GGDLPRLRASVLLGSLIPLLSLL 272 (383)
Q Consensus 213 ~~~-------~~---------~~~~~~-~~~~a~~i~~fsf~-~~~~ip~l~-~~~-~~~~k~~~~ai~~~~~i~~~~Yi 272 (383)
... .+ .|.... .-...+.. .++.+ +...+|.+. +.. ..|.|+.||++..+...+..+|+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl-~~aLm~GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi 285 (529)
T COG4147 207 PNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISL-GFALMVGTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYI 285 (529)
T ss_pred cchHHHHHhhcCcccCcccccCCCCcccCHHHHHHH-HHHHHHccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHH
Confidence 110 01 011111 11122222 12221 222344321 111 24678999999999999999998
Q ss_pred HHHH------HHhccCCccc-----------cc-------cCHHH--HH-hhcC-chhHHHHHHHHHHHHHHHHHHHHHH
Q 042761 273 VWDA------ISLGLSAQAD-----------QV-------IDPVE--LL-MRVR-WSGVSVMVEAFSLMAVGTSLIGTLL 324 (383)
Q Consensus 273 ~~~~------~~~g~~~~~~-----------~~-------~~pl~--~l-~~~~-~~~~~~~~~~~~~~al~tS~~g~~~ 324 (383)
.... ..++.-|... +. .++.. .. .+.+ ++|...++....+-+.+++.-|..+
T Consensus 286 ~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l 365 (529)
T COG4147 286 LTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLL 365 (529)
T ss_pred HHHHHHHHHHHHhccCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHH
Confidence 7533 1223222220 00 00111 11 2344 5788888888888888888888888
Q ss_pred hHHHHH-HHhhc
Q 042761 325 GFSEFF-KEQLK 335 (383)
Q Consensus 325 ~l~~~l-~~~~~ 335 (383)
..+..+ +|...
T Consensus 366 ~iasavsHDiY~ 377 (529)
T COG4147 366 VIASAVSHDLYA 377 (529)
T ss_pred HHHHHHHhHHHH
Confidence 777666 45443
No 83
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.97 E-value=0.0025 Score=64.18 Aligned_cols=108 Identities=11% Similarity=0.017 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc
Q 042761 82 FLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP 161 (383)
Q Consensus 82 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~ 161 (383)
++......+-|.+.|+....| .+..|..++-+||+..++......+...+...+...+.+--++.++|.|
T Consensus 73 ls~~~~~~~Q~~~~RlgivTG----------~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip 142 (439)
T PRK00701 73 LSNLMAMLLQSLSAKLGIATG----------RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIP 142 (439)
T ss_pred HHHHHHHHHHHHHhHhhhhcC----------CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344455666677666654322 4899999999999888877766655555555666666666666677888
Q ss_pred hhHHHHHHHHHHHHHH--HhcchhhHHHHHHHHHHHHHHH
Q 042761 162 ESVSGFLFTTVFTLLI--SIGGTRATDQFNQWLTASMIGL 199 (383)
Q Consensus 162 ~~~~~ii~~l~~~~~~--~~~g~k~~~~~~~~~~~~~i~~ 199 (383)
.+++.++..+....+. ...+.|.++++...+...+.+.
T Consensus 143 ~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~ 182 (439)
T PRK00701 143 LLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAA 182 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 7665444332211111 1235666666654444444333
No 84
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.95 E-value=0.00056 Score=68.87 Aligned_cols=150 Identities=14% Similarity=0.127 Sum_probs=82.1
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHh--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKA--SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~--~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
++|+.+.++...+-++..+....+.+-... ...++..+++.++++.++......+......|+.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~G-------------- 70 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRTG-------------- 70 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---------------
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhcccccccC--------------
Confidence 456667777777666666665555444332 2456666666666655554444444444443321
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCC--c---------------hhHHHHHHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNI--P---------------ESVSGFLFTTVFTL 175 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l--~---------------~~~~~ii~~l~~~~ 175 (383)
.+...++|..||.++..+..+...+...+-...-....++.+...++. + ..++.+++.++...
T Consensus 71 l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 150 (440)
T PF02133_consen 71 LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTL 150 (440)
T ss_dssp --HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHH
T ss_pred CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHH
Confidence 467788899999999999988877766655444444556666655421 1 12223333444343
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHH
Q 042761 176 LISIGGTRATDQFNQWLTASMIGL 199 (383)
Q Consensus 176 ~~~~~g~k~~~~~~~~~~~~~i~~ 199 (383)
.. +.|.+.+.+++.+..+.....
T Consensus 151 ~~-~~g~~~l~~~~~~~~~~~~~~ 173 (440)
T PF02133_consen 151 FA-IYGMKALRRLAVIAAPILLVV 173 (440)
T ss_dssp HH-CTHHHHHHHHHHCCHHHHHHH
T ss_pred HH-hcCHHHHHhHHhhhhHHHHhh
Confidence 34 358888888877666554433
No 85
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=97.88 E-value=0.0084 Score=59.38 Aligned_cols=142 Identities=16% Similarity=0.086 Sum_probs=77.7
Q ss_pred HHHHhhhhhhhhhhhH-HHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhc
Q 042761 46 ALIIGTSIGSGILALP-QKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLG 124 (383)
Q Consensus 46 ~~iigtiIGaGIL~LP-~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G 124 (383)
+++..+-+|.|=.+-- .+=++.|+- ++-.-+++...+..+-|++.|.....| .+..|..|+.++
T Consensus 11 ~lva~a~idPG~i~t~~~aGa~fGy~-----LLW~llls~~~~~~~Q~~aaRlg~vTg----------~~l~~~~r~~~~ 75 (390)
T TIGR01197 11 FLMSIAYIDPGNYSTDLQAGAAAGYK-----LLWVLLLSNIMALLLQRLCARLGVVTG----------LDLAEVCREHYP 75 (390)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhCHH-----HHHHHHHHHHHHHHHHHHHHHheeecC----------CCHHHHHHHHCC
Confidence 3444555666655421 111234432 122224456667777888777765322 589999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHH--HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHH
Q 042761 125 DWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFT--TVFTLLISIGGTRATDQFNQWLTASMIGLLVA 202 (383)
Q Consensus 125 ~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~--l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~ 202 (383)
|+..+.......+...+...+...+.+--++.++++|.+.+..+.. .+...+....+.|.++++...+...+.+.++.
T Consensus 76 ~~~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~ 155 (390)
T TIGR01197 76 KVPRITLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAY 155 (390)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHH
Confidence 8766655544444334444555556666666667888765544321 12112222246777777766655555444443
No 86
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.84 E-value=0.0049 Score=61.22 Aligned_cols=149 Identities=16% Similarity=0.108 Sum_probs=90.3
Q ss_pred CCccHHHHHHHHHhhhhhhhhhhhHH-HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCH
Q 042761 37 EKGTIAGAVALIIGTSIGSGILALPQ-KASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISI 115 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaGIL~LP~-a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~ 115 (383)
+..+..+-.++....-+|.|-.+--. +-++.|+-.. ..-+++....+.+=+.+.|+....| .+.
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll-----~vills~l~~~~~Q~~~arLgivTG----------~~l 79 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLL-----WVILLSNLMAYILQELSARLGIVTG----------KGL 79 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhC----------CcH
Confidence 34566666667777777777554322 2335554321 1112333444444455555544322 467
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Q 042761 116 RTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTAS 195 (383)
Q Consensus 116 ~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~ 195 (383)
.|..++-++|+.+++..+...+.......+...+.+--++-+++.|..++.+++.+....+....|.|..+++-..+...
T Consensus 80 aq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~~ 159 (416)
T COG1914 80 AEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYRLLERVVLILGLV 159 (416)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 77788889999999888887777777777888888888877788888777766665433333323356666665555444
Q ss_pred HHHHH
Q 042761 196 MIGLL 200 (383)
Q Consensus 196 ~i~~l 200 (383)
+.+.+
T Consensus 160 ~~i~~ 164 (416)
T COG1914 160 LVILF 164 (416)
T ss_pred HHHHH
Confidence 44333
No 87
>PHA02764 hypothetical protein; Provisional
Probab=97.84 E-value=0.0023 Score=60.17 Aligned_cols=92 Identities=7% Similarity=-0.096 Sum_probs=65.9
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASP--AGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~--~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
--|+.+.+++.+.-++.+-+....+.|.-++. -|. ..+...+++++++...+++++|++.++|+.
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLlALPgAL~YAELGSAmPrA------------ 76 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVFEIPLLLMYYKLTTKFPLN------------ 76 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------
Confidence 34667888888755555433333355654332 233 345667788888899999999999999986
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLG 139 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~ 139 (383)
.+.+.+.++.+|++.+++.++..|...
T Consensus 77 GGdYVYISRAFGP~~GFLvG~a~WLtl 103 (399)
T PHA02764 77 GGDYAYIRTAFSSKFYTIFGISLWLTY 103 (399)
T ss_pred CceEEEhHHhhCccHHHHHHHHHHHHH
Confidence 356678899999999999998877543
No 88
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.68 E-value=0.019 Score=57.61 Aligned_cols=217 Identities=13% Similarity=0.199 Sum_probs=104.7
Q ss_pred cCHHHHHHHHhchhhHHHHH---HHHHHHHHHHHHHHHHHhHhHhH----hhh-------------CC--chhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLAT---VFYVFLGYTSMIAYCSKSGEILY----HLL-------------NI--PESVSGFLFT 170 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~---~~~~~~~~~~~~ay~~~~g~~l~----~~~-------------~l--~~~~~~ii~~ 170 (383)
.+|....|..||-++..+-. .......||..+ |+ .|..++ ..+ ++ ...++-++|+
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt-y~--Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT-YA--GGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HH--hHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 58999999999987764433 333344455432 22 112221 111 11 1245667777
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-C-CCC----CCcCcchhhhHHHHHHHh----hhc
Q 042761 171 TVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVGGWSG-L-DGS----GNWGKVPATIPVIIFSLV----YHD 240 (383)
Q Consensus 171 l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~~~~~-~-~~~----~~~~~~~~a~~i~~fsf~----~~~ 240 (383)
++-.++. +.|++.+++++.+..+...+....+.+......+... . +.+ ......+..+..+....+ -.-
T Consensus 180 ~l~~l~~-~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~l 258 (497)
T COG1953 180 VLQLLVL-FKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLAL 258 (497)
T ss_pred HHHHHHH-hcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 7755555 4799999999999888877666665533332222211 0 111 111111222222222222 223
Q ss_pred cHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhc--cCCccccccCHHHHHhhcC-chhHH-HHHHHHHHHHHH
Q 042761 241 LAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLG--LSAQADQVIDPVELLMRVR-WSGVS-VMVEAFSLMAVG 316 (383)
Q Consensus 241 ~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g--~~~~~~~~~~pl~~l~~~~-~~~~~-~~~~~~~~~al~ 316 (383)
+.|...++- +++|...+.-.++.-+...+..++.++... ..=..+..-+|++.+.+.. +.... ...-.+.+.++.
T Consensus 259 N~~DFsRfa-~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~ 337 (497)
T COG1953 259 NIPDFTRFA-KSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATIS 337 (497)
T ss_pred CCchhhccc-CChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence 456655554 455544444334444444444333322211 0111234568988877643 22333 334444455555
Q ss_pred HHHHHHHHhHHHHHHHhh
Q 042761 317 TSLIGTLLGFSEFFKEQL 334 (383)
Q Consensus 317 tS~~g~~~~l~~~l~~~~ 334 (383)
++..++.++-..-+..++
T Consensus 338 ~Ni~aN~vsp~~D~s~l~ 355 (497)
T COG1953 338 TNIAANIVSPGYDLSALF 355 (497)
T ss_pred hhHHhccCChHHHHHHhc
Confidence 555555555554444443
No 89
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.66 E-value=0.07 Score=52.41 Aligned_cols=272 Identities=15% Similarity=0.222 Sum_probs=135.3
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhc---ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHH
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKAS---PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~---~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~ 116 (383)
..+-..++++..-.|||=+-.|-... ...++++.+..++.++..=..+.... .+ .+ .+++
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~---a~--~g------------~~~~ 68 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAV---AL--YG------------GGVE 68 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHh---hc--cC------------CCHH
Confidence 45566678999999999666665443 33344555555444432211111111 11 11 3688
Q ss_pred HHHHHHhchhhHHHHHH-HHHHHHHH--------HHHHHHHHhHhHhHhhhCCc-hhHHHHHHHHHHHHHHHhcchhhHH
Q 042761 117 TMAQETLGDWGGTLATV-FYVFLGYT--------SMIAYCSKSGEILYHLLNIP-ESVSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~-~~~~~~~~--------~~~ay~~~~g~~l~~~~~l~-~~~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
+++++. ||+.+.+... +|. ..| ..++|-.+..-.+++- +.+ ..+..++|..+.-.+. +.+-|-++
T Consensus 69 ~l~~~i-~~~fg~~f~~~iyL--sIGPffAiPRt~~vsfe~~i~p~~~~~-~~~~l~ifs~ifF~ia~~~s-l~psklid 143 (431)
T COG1114 69 SLATRI-GPWFGVLFAIAIYL--SIGPFFAIPRTGAVSFEVGISPLLGDS-SLPSLFIFSVIFFAIAYLFS-LNPSKLID 143 (431)
T ss_pred HHhhhc-cchHHHHHHHHHHH--HhcccccCCcccchhHHHhhhcccCCC-cchHHHHHHHHHHHHHHHHH-cCHHHHHH
Confidence 887765 4444444433 222 112 2234444433333221 111 1222333333322233 36778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-----CCCCc-CcchhhhHH--HHHHHhhhccHHHHHHHh-cCChhhHH
Q 042761 187 QFNQWLTASMIGLLVAIEVIAVVVGGWSGLD-----GSGNW-GKVPATIPV--IIFSLVYHDLAPVLCAYL-GGDLPRLR 257 (383)
Q Consensus 187 ~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~~-----~~~~~-~~~~~a~~i--~~fsf~~~~~ip~l~~~~-~~~~k~~~ 257 (383)
++.+++++.+++.++.+++.++..+..+..+ ....+ .++....-+ ..-|+.+-.++-.-.+.. .+++|+..
T Consensus 144 ~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~~~~~ 223 (431)
T COG1114 144 RVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTKKQII 223 (431)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence 9999999999887777665443333322110 00111 122222111 233343333433333332 23444333
Q ss_pred H----HHHHHHHHHHHHHHHHHHHHhccCCccc--cccC---HHHHHhh-cCchhHHHHHHHHHHHHHHHHHHHHHHhHH
Q 042761 258 A----SVLLGSLIPLLSLLVWDAISLGLSAQAD--QVID---PVELLMR-VRWSGVSVMVEAFSLMAVGTSLIGTLLGFS 327 (383)
Q Consensus 258 ~----ai~~~~~i~~~~Yi~~~~~~~g~~~~~~--~~~~---pl~~l~~-~~~~~~~~~~~~~~~~al~tS~~g~~~~l~ 327 (383)
| +-.++...-..+|... .-+|..+.+. +.++ .++...+ ..++....+..+...+|.+|+..|...++.
T Consensus 224 ~~~~~aglIa~i~La~iY~~L--~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~a 301 (431)
T COG1114 224 KYTIKAGLIAAILLALIYLSL--FYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACA 301 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2233333334555543 3356444321 1222 2332222 345566778899999999999999999999
Q ss_pred HHHHHhhc
Q 042761 328 EFFKEQLK 335 (383)
Q Consensus 328 ~~l~~~~~ 335 (383)
|+..+.+.
T Consensus 302 efF~~~~p 309 (431)
T COG1114 302 EFFSKLVP 309 (431)
T ss_pred HHHHHhcc
Confidence 99888776
No 90
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=97.57 E-value=0.0066 Score=61.24 Aligned_cols=105 Identities=16% Similarity=0.124 Sum_probs=77.5
Q ss_pred cHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHH
Q 042761 40 TIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMA 119 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a 119 (383)
+.+-..-+=+.++-|+|=+.-|...++.||.++.+.++++.++.-...=+++-..+ .+++ | .|..|++
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~S-vR~~-G----------~Si~~ia 120 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLS-VRHG-G----------KSIGEIA 120 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeee-eccC-C----------ccHHHHH
Confidence 33344445667888999999999999999999999988887776555544444332 2222 2 5999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHh
Q 042761 120 QETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYH 156 (383)
Q Consensus 120 ~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~ 156 (383)
++.+|+..+.++.+..++......+++.....+.+.+
T Consensus 121 ~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~~ 157 (575)
T COG1966 121 GKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLAN 157 (575)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999888877777766666665555543
No 91
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=97.45 E-value=0.0012 Score=66.87 Aligned_cols=266 Identities=17% Similarity=0.112 Sum_probs=154.1
Q ss_pred hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHH
Q 042761 57 ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYV 136 (383)
Q Consensus 57 IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~ 136 (383)
.|-++...+++|...+++++.++-.++.++++-....+.+-..+ ..+-+-+..+.+|+-.|--.++.|.
T Consensus 50 flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk-----------~Gg~yflis~slg~efggsigiIy~ 118 (643)
T KOG2083|consen 50 FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVK-----------SGGVYFLISRSLGPEFGGSIGIIYA 118 (643)
T ss_pred hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceec-----------cCcEEEEEEecccccccchhHHHHH
Confidence 35678889999999888888888788888777766655443222 2345555667777766667777777
Q ss_pred HHHHHHHHHHHHHhHhHhHhhhCCc-----hhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 042761 137 FLGYTSMIAYCSKSGEILYHLLNIP-----ESVSGFLFTTVFTLLISIGGTRATDQFNQWLTASMIGLLVAIEVIAVVVG 211 (383)
Q Consensus 137 ~~~~~~~~ay~~~~g~~l~~~~~l~-----~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~i~~l~~iiv~~~~~~ 211 (383)
+..-..++.|+.+++|.+.+++... ..++.+...+ +..++. .|++...+++.++..+.++++.-+++ +.+++
T Consensus 119 f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~gi~~vt~~i-ll~i~~-ag~~w~~k~q~~ll~il~iai~~f~~-gs~~~ 195 (643)
T KOG2083|consen 119 FANAVATAMYVVGFAESVAHLFETESKEMIDGIGSVTVLI-LLAINV-AGVEWEAKLQIVLLLILLIAIADFLV-GSFFS 195 (643)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhccHHHhcchhHHHHHH-HHHhhh-ccchhHHHHHHHHHHHHHHHHHHhhh-hhccC
Confidence 7777777889999999999988421 1133333333 344554 69999999988777666665555543 32221
Q ss_pred CC--C-C--------CC--CCCCcC---cchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 042761 212 GW--S-G--------LD--GSGNWG---KVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLGSLIPLLSLLVWD 275 (383)
Q Consensus 212 ~~--~-~--------~~--~~~~~~---~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~ 275 (383)
.. + . +. ...++. .++..+++.+-+..+.-.=..+...++++.+.+|+....+......+|+.+.
T Consensus 196 ~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 196 PNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred hhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhh
Confidence 11 1 0 00 011111 3444444443333221111122334555567899998889988888887642
Q ss_pred HHHhccCCcccc------ccC---H---HHHHhhc-CchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccc
Q 042761 276 AISLGLSAQADQ------VID---P---VELLMRV-RWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSL 337 (383)
Q Consensus 276 ~~~~g~~~~~~~------~~~---p---l~~l~~~-~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~ 337 (383)
...|.-+..+. ..+ | .+.++-. ......-........+..+|-.+...+..+-++++.+.+
T Consensus 276 -~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~ 349 (643)
T KOG2083|consen 276 -ADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALSSLVSAPKVLQALCKDS 349 (643)
T ss_pred -hhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcC
Confidence 33454443221 001 1 1111100 011122345556666777777777777787888766554
No 92
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.39 E-value=0.049 Score=52.80 Aligned_cols=106 Identities=17% Similarity=0.130 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHH
Q 042761 39 GTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTM 118 (383)
Q Consensus 39 ~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (383)
.+.+.....=+.++-|+|=..-|...+..||.|+.+.++++.++.-...=+..-..+ .+++ | .|+.++
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S-vR~~-G----------~Si~~i 119 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS-VRHK-G----------KSIGEI 119 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh-hcCC-C----------ccHHHH
Confidence 344455556777899999888999889999999999888887776555555544332 2221 2 599999
Q ss_pred HHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHh
Q 042761 119 AQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYH 156 (383)
Q Consensus 119 a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~ 156 (383)
++++.||.++.++.+..++.+....+++....++.+.+
T Consensus 120 ~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 120 AGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999998888887777777666666543
No 93
>PRK15015 carbon starvation protein A; Provisional
Probab=96.79 E-value=0.084 Score=54.68 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=72.3
Q ss_pred HHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhch
Q 042761 46 ALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGD 125 (383)
Q Consensus 46 ~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~ 125 (383)
-.=+.++-|+|=+.-|...++.||.|+++.++++.++.-...=+.+-..+ .+++ | .|..+++++..|+
T Consensus 90 GHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S-~R~~-G----------rSig~ia~~~iG~ 157 (701)
T PRK15015 90 GHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVS-TRRD-G----------RSLGELVKEEMGP 157 (701)
T ss_pred HHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeee-ecCC-C----------ccHHHHHHHHhhH
Confidence 35667888999999999888999999998888876654444333333221 1222 2 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHhHhH
Q 042761 126 WGGTLATVFYVFLGYTSMIAYCSKSGEILY 155 (383)
Q Consensus 126 ~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~ 155 (383)
.++.++.+..++.+...++++.....+.+.
T Consensus 158 ~~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 158 TAGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999888887777777776666666654
No 94
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.34 E-value=0.64 Score=45.92 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=58.4
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
.-..+++++.||+.++.+..+...+.|+..+.+.+.+.+++++++++ +|+..+.+++++....+.+ .|.+.+-+
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~-~Gl~~Ii~ 329 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVAN-LGLTQIIS 329 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH-hCHHHHHH
Confidence 35678899999999999999999999999999999999999999864 7777776666665444443 35554444
No 95
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.09 E-value=0.094 Score=54.37 Aligned_cols=39 Identities=5% Similarity=-0.055 Sum_probs=29.8
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 042761 246 CAYLGGDLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQ 284 (383)
Q Consensus 246 ~~~~~~~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~ 284 (383)
-.|+++|.|.+||..+.+.....++|++..+..-...|.
T Consensus 317 SgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r 355 (945)
T KOG1288|consen 317 SGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPR 355 (945)
T ss_pred CccccCccccCCccchHHHHHHHHHHHHHHHHhccCcch
Confidence 346766668899999999999999999876655445554
No 96
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=94.73 E-value=0.58 Score=46.66 Aligned_cols=79 Identities=16% Similarity=0.108 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc
Q 042761 82 FLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP 161 (383)
Q Consensus 82 ~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~ 161 (383)
++.+.++++=.++.|...-.| ....|..++.+.|+.++..++.-=+...+.=...+++.+-.+.-++++|
T Consensus 68 ~a~~~alllQ~LaARLGvVTG----------~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IP 137 (503)
T KOG1291|consen 68 LANFMALLLQRLAARLGVVTG----------KHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIP 137 (503)
T ss_pred HHHHHHHHHHHHHHHHccccc----------HHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCc
Confidence 345566666677777765333 4788899999999999888776555555555667777776666667888
Q ss_pred hhHHHHHHH
Q 042761 162 ESVSGFLFT 170 (383)
Q Consensus 162 ~~~~~ii~~ 170 (383)
-|.+.++..
T Consensus 138 L~~GVliTi 146 (503)
T KOG1291|consen 138 LWAGVLITI 146 (503)
T ss_pred HHHHHHHHH
Confidence 877765544
No 97
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=94.71 E-value=5.6 Score=41.08 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042761 39 GTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEIN 94 (383)
Q Consensus 39 ~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~ 94 (383)
.+-.+-....+|..+|-| +.-.|+...+.|....++..+++- +..-.-.++.|.+
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~-~~~giP~~~lE~~ 60 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFL-LLVGIPLLYLELA 60 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHH-HHTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence 456677888999999999 788999888777544444444432 2233455666755
No 98
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.69 E-value=1.1 Score=45.00 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=60.3
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQF 188 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~~ 188 (383)
.=..+++++.+|+.|..+.+++..+-|...+++-..+.+|++++.++ ++++.+..+++++-..+.+ .|++.+-+.
T Consensus 261 ~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian-~Gl~~Ii~~ 336 (427)
T PF05525_consen 261 ELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIAN-LGLDQIIKI 336 (427)
T ss_pred HHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH-hCHHHHHHH
Confidence 35678889999999999999999999999999999999999999997 7888777777765444443 466554443
No 99
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=93.57 E-value=9.8 Score=38.92 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=21.0
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhh
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILAL 60 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~L 60 (383)
.+|++.|.++..++++.+-+|+|++.-
T Consensus 70 d~kPefS~~sW~aMlf~aGig~Givfw 96 (485)
T PF02028_consen 70 DAKPEFSTFSWFAMLFCAGIGAGIVFW 96 (485)
T ss_dssp SS--SS-HHHHHHHHHHHCSSHHHHHH
T ss_pred CCCCCCCchHHHHHHHHHHhcchhhcc
Confidence 456778999999999999999998754
No 100
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=92.91 E-value=3.5 Score=40.83 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=58.4
Q ss_pred CHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-CchhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 114 SIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-IPESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 114 ~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l~~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
=..+++++.||+.+..+.+.+..+-|...+++-+.+.+|++++.++ +++..+..++++.-..+.+ .|+..+-+
T Consensus 264 IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan-~GL~~Ii~ 337 (431)
T COG1114 264 ILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVAN-LGLEQIIK 337 (431)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-hhHHHHHH
Confidence 4678889999999999999999999999999999999999999986 8888787777765333333 35544433
No 101
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=92.78 E-value=0.63 Score=48.94 Aligned_cols=150 Identities=19% Similarity=0.246 Sum_probs=88.4
Q ss_pred cHHHHHHHHHhhhhhhhhh-hhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhcCCCCCCccccccccCHH
Q 042761 40 TIAGAVALIIGTSIGSGIL-ALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVS--LRRGKRKGEEENEFEVISIR 116 (383)
Q Consensus 40 s~~~~~~~iigtiIGaGIL-~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~--~~~~~~~~~~~~~~~~~~~~ 116 (383)
+..++..=-+-.+.|.=.| -|-.....+|..-+..++++|+..++.++..+..++.. .|.+ .+|+
T Consensus 116 t~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaG------------GsYf 183 (1075)
T KOG2082|consen 116 TLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAG------------GSYF 183 (1075)
T ss_pred eeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCC------------CeeE
Confidence 4444444344444444432 35556677787777777777777777777666655421 1221 3665
Q ss_pred HHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhh-h------C-----------C-chhHHHHHHHHHHHHHH
Q 042761 117 TMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHL-L------N-----------I-PESVSGFLFTTVFTLLI 177 (383)
Q Consensus 117 ~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~-~------~-----------l-~~~~~~ii~~l~~~~~~ 177 (383)
-+ .+.+|+-.|-.+++++.+-.-.+.+.|+.+.-+.+-.+ + + . +.++...++.++.+.++
T Consensus 184 mI-SRsLGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIV 262 (1075)
T KOG2082|consen 184 MI-SRSLGPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIV 262 (1075)
T ss_pred EE-ecccCccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHH
Confidence 55 55666655556666555444444466777766665443 2 1 1 23566666777777777
Q ss_pred HhcchhhHHHHHHHHHHHHHHHHHHH
Q 042761 178 SIGGTRATDQFNQWLTASMIGLLVAI 203 (383)
Q Consensus 178 ~~~g~k~~~~~~~~~~~~~i~~l~~i 203 (383)
+ .|+|.+.++..++....++.++++
T Consensus 263 f-~GVK~Vnk~A~vfL~CVILSIlai 287 (1075)
T KOG2082|consen 263 F-VGVKFVNKFAPVFLACVILSILAI 287 (1075)
T ss_pred H-HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5 799999888776655555554444
No 102
>PRK09928 choline transport protein BetT; Provisional
Probab=91.93 E-value=19 Score=38.20 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=21.7
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhh
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILA 59 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~ 59 (383)
+|.+.|.+++.++++.+-+|+|++.
T Consensus 89 ~kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 89 SKPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCCcchHHHHHHHHhhhhhhee
Confidence 4567899999999999999999864
No 103
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=90.49 E-value=5.6 Score=39.99 Aligned_cols=71 Identities=11% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
...++++.+|++++.+..+..++-|+...++-..+.++++++.++++++.+..+++++..++.+ .|.+.+-
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lSn-~G~~~II 337 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSN-LGLSQLI 337 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHH-hHHHHHH
Confidence 4567789999999999999999999999999999999999998888887777666665444443 3554433
No 104
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=87.18 E-value=3.3 Score=43.01 Aligned_cols=218 Identities=17% Similarity=0.171 Sum_probs=106.0
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
-|+..++-..+-++.+-+|++ ++++|......|.... ...+.. ......+.. ...|.-.. ....+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~--~~~~~~---l~~~~~~~~--~f~Pvf~~-------~~v~~ 109 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYW--FFEWNA---LLSVLLLGW--IFIPVFYR-------LGVTT 109 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHH--HHHHHH---HHHHHhhhe--EEEEEEEe-------cCeee
Confidence 455666666666777888888 6789988777775321 111111 111122221 11222100 01267
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLTA 194 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~ 194 (383)
.+||-++-||+..+.+..+.+.++.+.-+..+...-+-.+++.++.+..+...+..++...-....|+|.+-+...+=+.
T Consensus 110 ~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~ 189 (585)
T KOG2349|consen 110 MYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTV 189 (585)
T ss_pred hhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHH
Confidence 88999999998877777776666555444443333344445555544332222222222222223577766554444455
Q ss_pred HHHHHHHHHHHHHHhh-cCCC--------C--------C-CCC----CCcCcchhhhHHHHHHHhhhccHHHHHHHhc-C
Q 042761 195 SMIGLLVAIEVIAVVV-GGWS--------G--------L-DGS----GNWGKVPATIPVIIFSLVYHDLAPVLCAYLG-G 251 (383)
Q Consensus 195 ~~i~~l~~iiv~~~~~-~~~~--------~--------~-~~~----~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~-~ 251 (383)
.+......+.+.+... ++.. + . ..| .-|.-++.........|+.+++ .+++++. +
T Consensus 190 iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~--~VQR~lsl~ 267 (585)
T KOG2349|consen 190 IMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQL--IVQRYLSLP 267 (585)
T ss_pred HHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHH--HHhHHhccc
Confidence 5554444433222211 1110 0 0 001 1133233333344445556554 4566663 4
Q ss_pred ChhhHHHHHHHHHHHHHH
Q 042761 252 DLPRLRASVLLGSLIPLL 269 (383)
Q Consensus 252 ~~k~~~~ai~~~~~i~~~ 269 (383)
+.|+.+++........++
T Consensus 268 slk~ak~~~~~~~~~~~l 285 (585)
T KOG2349|consen 268 SLKHAKPSLLLFGYGVLL 285 (585)
T ss_pred cHHHhhhhhhhhhhHHHH
Confidence 567888877655444333
No 105
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=86.70 E-value=39 Score=34.30 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=21.6
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhh
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILAL 60 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~L 60 (383)
|++.|.++..++++.+-+|+|++.-
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfw 58 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFW 58 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhh
Confidence 5678899999999999999998753
No 106
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=85.67 E-value=46 Score=34.23 Aligned_cols=25 Identities=8% Similarity=0.159 Sum_probs=22.0
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhh
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILAL 60 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~L 60 (383)
|++.|.++...+++.+-+|+|++.-
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfw 107 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFW 107 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhh
Confidence 6778999999999999999998754
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=85.26 E-value=49 Score=34.10 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=20.9
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhh
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILAL 60 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~L 60 (383)
|..-+.....++++..-+|.|++-.
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeEe
Confidence 4567888899999999999998754
No 108
>PRK09950 putative transporter; Provisional
Probab=84.12 E-value=55 Score=33.74 Aligned_cols=147 Identities=15% Similarity=0.154 Sum_probs=73.0
Q ss_pred cCCccHHHHHHHHHhhhhhhhhhhh----HHH-hcc--cC----cH----HHHHHHHHHHHHHHHHHHHHHHHHhh----
Q 042761 36 QEKGTIAGAVALIIGTSIGSGILAL----PQK-ASP--AG----IF----PSSLSLIVCWGFLLIEALILIEINVS---- 96 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaGIL~L----P~a-~~~--~G----~~----~~~~~lll~~~~~~~~~~~l~e~~~~---- 96 (383)
|++.|.++..++++.+-+|+|++.- |.. ++. .| -. .+.-...+=|.+..+..+.+.-+...
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999999998753 221 211 11 11 12222233344444443433333322
Q ss_pred hhcCCCCCCccccccccCHHHHHHHHhch----hhHHHHHHHHHHHHHHH-HHHHHH---HhHhHhHhhhCCchh----H
Q 042761 97 LRRGKRKGEEENEFEVISIRTMAQETLGD----WGGTLATVFYVFLGYTS-MIAYCS---KSGEILYHLLNIPES----V 164 (383)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~a~~~~G~----~~~~l~~~~~~~~~~~~-~~ay~~---~~g~~l~~~~~l~~~----~ 164 (383)
++++.+ .+..+..+-.+|+ +.+.+.++...+...+. ..+.-. ..++-++.++|++.. .
T Consensus 161 ~rk~~p----------l~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~ 230 (506)
T PRK09950 161 VRKNKG----------LSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQA 230 (506)
T ss_pred hhcCCC----------CchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHH
Confidence 233221 4677777777774 34666666655543333 222222 234455566666542 2
Q ss_pred HH-HHHHHHHHHHHHhcch-hhHHHHHHHHH
Q 042761 165 SG-FLFTTVFTLLISIGGT-RATDQFNQWLT 193 (383)
Q Consensus 165 ~~-ii~~l~~~~~~~~~g~-k~~~~~~~~~~ 193 (383)
.. .+.+++++.-.. .|+ |.+++++++..
T Consensus 231 ~ii~vi~~if~~S~~-~Gl~kGIk~LS~~N~ 260 (506)
T PRK09950 231 FVILLSGVIFCLSSY-IGIDNGLQRLSKMVG 260 (506)
T ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 21 222333333332 455 55555555543
No 109
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=80.02 E-value=36 Score=35.10 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=25.7
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEI 153 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~ 153 (383)
....++-...+||++.........+..+....+-..+.+..
T Consensus 325 ~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~ 365 (550)
T KOG1289|consen 325 QPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRL 365 (550)
T ss_pred ChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHH
Confidence 46788888999999886555555555555444444443333
No 110
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=53.85 E-value=2.7e+02 Score=28.66 Aligned_cols=33 Identities=9% Similarity=0.011 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q 042761 163 SVSGFLFTTVFTLLISIGGTRATDQFNQWLTASM 196 (383)
Q Consensus 163 ~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~~~~ 196 (383)
..+-.+|+++-.++.+ .+...+.++-.+-.+..
T Consensus 187 ~i~FfIFwv~s~~~~~-~~p~~ir~lf~~ka~~t 219 (572)
T KOG2466|consen 187 FIGFFIFWVASLPFYW-FPPYKIRHLFTWKAVLT 219 (572)
T ss_pred HHHHHHHHHHhhheee-ccHHHhhhHHHHHHhhh
Confidence 4566788887666664 57777777765544443
No 111
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=48.48 E-value=3.3e+02 Score=28.10 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhHHHHHHH---HHHHH--HHHHHHH-HHHhHhHh
Q 042761 81 GFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGGTLATVF---YVFLG--YTSMIAY-CSKSGEIL 154 (383)
Q Consensus 81 ~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~~l~~~~---~~~~~--~~~~~ay-~~~~g~~l 154 (383)
++....+..+.....+.++. .+..++..+.+...+.++.-.. +++.. +..+... .+.+++.+
T Consensus 305 l~F~i~GivYG~~sG~iks~------------~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L 372 (502)
T PF03806_consen 305 LFFLIPGIVYGIASGTIKSD------------KDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFL 372 (502)
T ss_pred HHHHHHHHHHhhhhceecCH------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 44455677777766555442 2455555555555555443222 22221 1122222 23455665
Q ss_pred HhhhCCchhHHHHHHHHHHHHHHHh
Q 042761 155 YHLLNIPESVSGFLFTTVFTLLISI 179 (383)
Q Consensus 155 ~~~~~l~~~~~~ii~~l~~~~~~~~ 179 (383)
++. |++.....+.|.++.+.++.+
T Consensus 373 ~~~-~~~~~~l~i~fill~a~iNLf 396 (502)
T PF03806_consen 373 KSL-GLPGIPLIIGFILLTAFINLF 396 (502)
T ss_pred Hhc-CCCcHHHHHHHHHHHHHHHHh
Confidence 543 555555555666666666654
No 112
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=33.29 E-value=3.5e+02 Score=24.11 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=27.0
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGE 152 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~ 152 (383)
.++.+-+++.|.|.+....-+.-++...=..+...++.++
T Consensus 97 ~~~l~~a~~~f~r~G~~~vf~~RFip~vRt~ip~~AG~~~ 136 (208)
T COG0586 97 RKKLDKAELLFERHGLFAIFLGRFIPGVRTLVPIVAGMSK 136 (208)
T ss_pred HHHHHHHHHHHHHcCchhhhhhcccchhHhhhhHhhhhcc
Confidence 4778889999999888777666665544444455555444
No 113
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=30.86 E-value=2.6e+02 Score=24.32 Aligned_cols=62 Identities=18% Similarity=0.313 Sum_probs=33.9
Q ss_pred hhhhhhhhhhHHHhcc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhchhhH
Q 042761 51 TSIGSGILALPQKASP--AGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGDWGG 128 (383)
Q Consensus 51 tiIGaGIL~LP~a~~~--~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~~~~ 128 (383)
|-||.+++..|.+..+ -++..-.+.++..++++...++++- -+-++.-|.|.|
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAllY~-------------------------~~l~k~~g~W~G 101 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALLYY-------------------------ALLKKFKGPWPG 101 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHhcccchH
Confidence 4577788888876652 3333223334444445444444333 334555567777
Q ss_pred HHHHHHHHH
Q 042761 129 TLATVFYVF 137 (383)
Q Consensus 129 ~l~~~~~~~ 137 (383)
.+.+++.|.
T Consensus 102 i~YG~~~W~ 110 (173)
T PF11085_consen 102 ILYGLAWWA 110 (173)
T ss_pred HHHHHHHHH
Confidence 777766654
No 114
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.70 E-value=4.2e+02 Score=24.24 Aligned_cols=14 Identities=21% Similarity=0.282 Sum_probs=7.9
Q ss_pred HHHHHHHhhhhhhh
Q 042761 43 GAVALIIGTSIGSG 56 (383)
Q Consensus 43 ~~~~~iigtiIGaG 56 (383)
-...+++|..+|+-
T Consensus 11 ~~~~illg~~iGg~ 24 (248)
T PF11368_consen 11 FLLLILLGGLIGGF 24 (248)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666643
No 115
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=30.55 E-value=6.7e+02 Score=26.47 Aligned_cols=58 Identities=12% Similarity=0.101 Sum_probs=36.1
Q ss_pred hhhhhhhHHHh--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccCHHHHHHHHhch
Q 042761 54 GSGILALPQKA--SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVISIRTMAQETLGD 125 (383)
Q Consensus 54 GaGIL~LP~a~--~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~G~ 125 (383)
..++....... .+..++..++.++++.+++...+...++... .|. .++..+.+..+|-
T Consensus 368 v~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P~-------------~~~~~~sqli~g~ 427 (624)
T PF03169_consen 368 VLAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NPV-------------SGLNILSQLIFGL 427 (624)
T ss_pred HHHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-Ccc-------------hhhhHHHHHHHHH
Confidence 33455555556 3455555667777777888888888887654 222 3566666666653
No 116
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.85 E-value=2.2e+02 Score=22.88 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=21.3
Q ss_pred HHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHH
Q 042761 47 LIIGTSIGSGILALPQKASPAGIFPSSLSLIVCW 80 (383)
Q Consensus 47 ~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~ 80 (383)
.+-|+++|+||=-+---++....| +.+++++.+
T Consensus 52 fIsGilVGa~iG~llD~~agTsPw-glIv~lllG 84 (116)
T COG5336 52 FISGILVGAGIGWLLDKFAGTSPW-GLIVFLLLG 84 (116)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH
Confidence 688999999986666666666654 444433333
No 117
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.52 E-value=3.4e+02 Score=22.15 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=22.2
Q ss_pred hhhhhhhhcccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcH
Q 042761 26 QLEEETIKNDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIF 70 (383)
Q Consensus 26 ~~~~~~~~~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~ 70 (383)
.|+.|+.. -|.+|.-+.......+.+-.-++++|.++- .|++
T Consensus 10 RLN~ePvV--~rGlT~~El~~~a~~~~~~g~~~gl~la~~-~g~~ 51 (121)
T PF11990_consen 10 RLNREPVV--FRGLTADELGLAAGVGFVAGLVVGLPLALL-TGWW 51 (121)
T ss_pred hhcCCCCe--ecCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 35555554 255666666553333333334677887665 4443
No 118
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=23.68 E-value=3.3e+02 Score=20.61 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=20.8
Q ss_pred CccHHHHHHHHHhhhhhhhhhhhHHH
Q 042761 38 KGTIAGAVALIIGTSIGSGILALPQK 63 (383)
Q Consensus 38 ~~s~~~~~~~iigtiIGaGIL~LP~a 63 (383)
..|..|......+..+|.|+..+-..
T Consensus 16 GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 16 GLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999987765443
Done!