Query 042761
Match_columns 383
No_of_seqs 234 out of 1715
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 16:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 5.5E-25 1.9E-29 219.1 25.6 315 35-377 6-334 (445)
2 3gia_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 201.9 22.6 289 35-338 4-307 (444)
3 4djk_A Probable glutamate/gamm 99.8 3.8E-18 1.3E-22 172.7 26.4 308 34-373 8-345 (511)
4 2jln_A MHP1; hydantoin, transp 99.0 3.3E-07 1.1E-11 92.4 27.9 281 34-335 22-331 (501)
5 3dh4_A Sodium/glucose cotransp 98.7 7E-06 2.4E-10 83.2 28.1 287 34-336 17-355 (530)
6 2xq2_A Sodium/glucose cotransp 98.5 9.9E-05 3.4E-09 75.8 27.6 284 36-336 48-384 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.7 0.036 1.2E-06 55.6 27.2 58 37-95 7-65 (519)
8 2wsw_A BCCT family betaine/car 81.8 42 0.0015 33.1 23.8 26 35-60 87-112 (509)
9 4ain_A Glycine betaine transpo 73.6 36 0.0012 33.9 12.3 25 35-59 92-116 (539)
10 3lvh_D LCB, clathrin light cha 11.7 25 0.00086 29.9 -1.8 13 1-13 104-116 (205)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.94 E-value=5.5e-25 Score=219.15 Aligned_cols=315 Identities=15% Similarity=0.112 Sum_probs=241.2
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
++|+.+.++++++.+|++||+|++.+|...+.+|. .+++..++++++....++.+.|+..++|+. .+
T Consensus 6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~------------Gg 72 (445)
T 3l1l_A 6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSP------------GG 72 (445)
T ss_dssp -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT------------TT
T ss_pred CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCC------------CC
Confidence 46889999999999999999999999998888886 577888888999999999999999999874 48
Q ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC-----CchhHHHHHHHHHHHHHHHhcchhhHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN-----IPESVSGFLFTTVFTLLISIGGTRATDQFN 189 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~ 189 (383)
.++++++.+||+.+++.++.+++.......++....++++..+++ .+..+..+.+.+++..++. .|+|...+++
T Consensus 73 ~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~g~~~~~~~~ 151 (445)
T 3l1l_A 73 SYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNI-VGPKMITRVQ 151 (445)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHH
T ss_pred chhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHH-hchHHHHHHH
Confidence 999999999999999999999988777777788888888877664 1223344555555566675 7999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCC---CcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761 190 QWLTASMIGLLVAIEVIAVVVGGWSGLD---GSG---NWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263 (383)
Q Consensus 190 ~~~~~~~i~~l~~iiv~~~~~~~~~~~~---~~~---~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~ 263 (383)
.+++..+++.++.+++.+....+.++.. .+. ++.++..++...+++|.+.+..+.+.+|+|+|+|++||++..+
T Consensus 152 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~ 231 (445)
T 3l1l_A 152 AVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGG 231 (445)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHH
Confidence 9999988877666554333222222211 111 2456778888999999999999999999976668999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCccc--cccCHHHH-HhhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccCCC
Q 042761 264 SLIPLLSLLVWDAISLGLSAQAD--QVIDPVEL-LMRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLSWN 340 (383)
Q Consensus 264 ~~i~~~~Yi~~~~~~~g~~~~~~--~~~~pl~~-l~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~~~ 340 (383)
..++.++|++..++..+..|.++ +.++|... .....+++...++.++.+++..++.++...+..+.+..+-++..
T Consensus 232 ~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~-- 309 (445)
T 3l1l_A 232 VLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL-- 309 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--
Confidence 99999999999998888888765 23456543 33344567888899999999999999999998877766544333
Q ss_pred CCCCCCCCCcccccccccccccCcchheeeeeecccc
Q 042761 341 SSPTKTSKESTEFFGLRNWWGRNKISFTAMAMVVTPS 377 (383)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~pp 377 (383)
.| +.+++ .+|+|.|..+.+++.+..
T Consensus 310 --------lP-~~~~~---~~~~~~P~~a~~~~~~~~ 334 (445)
T 3l1l_A 310 --------FP-PIFAR---VNKAGTPVAGLIIVGILM 334 (445)
T ss_dssp --------SC-GGGGC---CCTTCCCHHHHHHHHHHH
T ss_pred --------Cc-HHHHh---cCCCCCCHHHHHHHHHHH
Confidence 33 34555 556789988877655533
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.90 E-value=1.3e-22 Score=201.94 Aligned_cols=289 Identities=12% Similarity=0.114 Sum_probs=218.4
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhhHHHh-cccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCcccccccc
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILALPQKA-SPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVI 113 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~LP~a~-~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~ 113 (383)
+||+.+.++..++.+|++||+|++.+|... +.+|. ..++..++++++....++.++|++.++|+. .
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~------------G 70 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSN------------A 70 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCT------------T
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC------------C
Confidence 578899999999999999999999988654 45565 677788888999999999999999999874 4
Q ss_pred CHHHHHHHHhchh--hHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhCCc--hh---HHHHHHHHHHHHHHHhcchhhHH
Q 042761 114 SIRTMAQETLGDW--GGTLATVFYVFLGYTSMIAYCSKSGEILYHLLNIP--ES---VSGFLFTTVFTLLISIGGTRATD 186 (383)
Q Consensus 114 ~~~~~a~~~~G~~--~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l~--~~---~~~ii~~l~~~~~~~~~g~k~~~ 186 (383)
+.++++++.+|+. +++ .++.+++........+..+.++++.++++.+ ++ ...+.+.+++..++. .|.|...
T Consensus 71 g~y~~~~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~g~~~~~ 148 (444)
T 3gia_A 71 GPIAFIHKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNF-FGSKAVG 148 (444)
T ss_dssp THHHHHHHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH-HTHHHHH
T ss_pred cHHHhHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH-HhHHHHH
Confidence 7899999999985 344 4566766656666777788888888887532 11 223444555566665 6999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC---CCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcCChhhHHHHHHHH
Q 042761 187 QFNQWLTASMIGLLVAIEVIAVVVGGWSGLD---GSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGGDLPRLRASVLLG 263 (383)
Q Consensus 187 ~~~~~~~~~~i~~l~~iiv~~~~~~~~~~~~---~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~~~k~~~~ai~~~ 263 (383)
+++.+.+..+++.++.+++.+....+.++.. .+.+|.+++.++...+++|.+.+..+.+.+|+++|+|++||++..+
T Consensus 149 ~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~ 228 (444)
T 3gia_A 149 RAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFIS 228 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHH
Confidence 9999999998877776665554444443332 1223445677777788999999999988899976667899999999
Q ss_pred HHHHHHHHHHHHHHHhccCCcccc---ccCHHHHH-hhcCchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhcccC
Q 042761 264 SLIPLLSLLVWDAISLGLSAQADQ---VIDPVELL-MRVRWSGVSVMVEAFSLMAVGTSLIGTLLGFSEFFKEQLKSLS 338 (383)
Q Consensus 264 ~~i~~~~Yi~~~~~~~g~~~~~~~---~~~pl~~l-~~~~~~~~~~~~~~~~~~al~tS~~g~~~~l~~~l~~~~~~~~ 338 (383)
..++.++|++..++..+..|.++- .++|+... ....+++...++++..+++..++.++...+.+..+..+-++..
T Consensus 229 ~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 307 (444)
T 3gia_A 229 ILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGE 307 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999998998887641 23454433 2233466777889999999999999999988777666554443
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.81 E-value=3.8e-18 Score=172.71 Aligned_cols=308 Identities=13% Similarity=0.055 Sum_probs=207.9
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhcccCcHHHHHHHHHHHHHH-HHHHHHHHHHHh--hhhcCCCCCCccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKASPAGIFPSSLSLIVCWGFL-LIEALILIEINV--SLRRGKRKGEEENEF 110 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~~~G~~~~~~~lll~~~~~-~~~~~~l~e~~~--~~~~~~~~~~~~~~~ 110 (383)
..+|+++.++++++.+++++| +..+|. .+..|. ..++..+++.++. ...++.++|++. ++| .
T Consensus 8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~-~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~---------- 72 (511)
T 4djk_A 8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGF-SLVFFLLLGGILWFIPVGLCAAEMATVDGWE-E---------- 72 (511)
T ss_dssp ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTT-HHHHHHHHHHHHTHHHHHHHHHHHHTTSCC-------------
T ss_pred ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCC-C----------
Confidence 457889999999999999996 667776 456665 3444444444443 348999999999 999 5
Q ss_pred cccCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhhC---Cc-----hhHHHHHHHHHHHHHHHhcch
Q 042761 111 EVISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLLN---IP-----ESVSGFLFTTVFTLLISIGGT 182 (383)
Q Consensus 111 ~~~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---l~-----~~~~~ii~~l~~~~~~~~~g~ 182 (383)
.+.+.++++.+||..+++.++.+++.......++....++.+..+++ ++ .....+++.++++.++. .|.
T Consensus 73 --GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~-~g~ 149 (511)
T 4djk_A 73 --GGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQF-GGT 149 (511)
T ss_dssp ---CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHH-TCS
T ss_pred --CChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHH-hCh
Confidence 48999999999999999999999887776666666666666665531 21 22334445555566665 799
Q ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHhh--cC-C-------CCCCCCCCcCcchhhhHHHHHHHhhhccHHHHHHHhcC
Q 042761 183 RATDQFNQWLTASM-IGLLVAIEVIAVVV--GG-W-------SGLDGSGNWGKVPATIPVIIFSLVYHDLAPVLCAYLGG 251 (383)
Q Consensus 183 k~~~~~~~~~~~~~-i~~l~~iiv~~~~~--~~-~-------~~~~~~~~~~~~~~a~~i~~fsf~~~~~ip~l~~~~~~ 251 (383)
|...+++.+.+..+ ++.++.+++.+... .+ . +...+.....+.+.++...+++|.+.+....+.+|+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSN 229 (511)
T ss_dssp SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccC
Confidence 99999999877664 33344333333321 11 1 00101111124556678889999999999999999987
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-ccCH-HHHH---hh-cC--chhHHHHHHHHHHHHHHHHHHHHH
Q 042761 252 DLPRLRASVLLGSLIPLLSLLVWDAISLGLSAQADQ-VIDP-VELL---MR-VR--WSGVSVMVEAFSLMAVGTSLIGTL 323 (383)
Q Consensus 252 ~~k~~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~-~~~p-l~~l---~~-~~--~~~~~~~~~~~~~~al~tS~~g~~ 323 (383)
++|++||++..+..++.++|++..++..+..|.++. ..++ .+.+ .+ .+ .++...++.++.+++.+++..+..
T Consensus 230 P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 230 PGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998987652 2233 2222 12 33 467888899999999999988888
Q ss_pred HhHHHHHHHhhcccCCCCCCCCCCCCcccccccccccccCcchheeeeee
Q 042761 324 LGFSEFFKEQLKSLSWNSSPTKTSKESTEFFGLRNWWGRNKISFTAMAMV 373 (383)
Q Consensus 324 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~ 373 (383)
.+....+..+-++... | +.+++ ++|+|.|..+.+++
T Consensus 310 ~~~sR~l~a~ardg~l----------P-~~~~~---~~~~~~P~~ai~~~ 345 (511)
T 4djk_A 310 VGPSRGMYVTAQKNLL----------P-AAFAK---MNKNGVPVTLVISQ 345 (511)
T ss_dssp THHHHHTCHHHHGGGC----------S-SSCCC---CCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHccCCcc----------c-HHHHh---cCCCCCcHHHHHHH
Confidence 8777665544433332 2 23444 55678888777664
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.98 E-value=3.3e-07 Score=92.37 Aligned_cols=281 Identities=11% Similarity=0.033 Sum_probs=165.1
Q ss_pred cccCCccHHHHHHHHHhhhhhhhhhhhHHHhc-ccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSGILALPQKAS-PAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaGIL~LP~a~~-~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
.++|+.+.++...+-+|..+..+-+.+...+. ..++..+++.++++.++......+......++.
T Consensus 22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~G-------------- 87 (501)
T 2jln_A 22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWG-------------- 87 (501)
T ss_dssp GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHC--------------
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcC--------------
Confidence 34566788888888888877777766554433 445566666666655555444445555544432
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHhHhHhHhhh----CCc-hhHHHHHHHHHHHHHHHhcchhhHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVFLGYTSMIAYCSKSGEILYHLL----NIP-ESVSGFLFTTVFTLLISIGGTRATDQ 187 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~~~~~~~~ay~~~~g~~l~~~~----~l~-~~~~~ii~~l~~~~~~~~~g~k~~~~ 187 (383)
.++..+.|..||++++.+..+...+...+-........|+.+..++ +.+ .+++.+++.++..++. +.|.|.+.+
T Consensus 88 l~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~-~~G~~~i~~ 166 (501)
T 2jln_A 88 INFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTT-FYGITFIRW 166 (501)
T ss_dssp CCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-TTHHHHHHH
T ss_pred CChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHH-HhCHHHHHH
Confidence 4788999999999999999988888777776666666677776654 666 4667777777656556 479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC--CC-CC-CC-CCcCcchhhhHHHHHHH--hhhccHHHHHHHhcCChhh-----
Q 042761 188 FNQWLTASMIGLLVAIEVIAVVVGGW--SG-LD-GS-GNWGKVPATIPVIIFSL--VYHDLAPVLCAYLGGDLPR----- 255 (383)
Q Consensus 188 ~~~~~~~~~i~~l~~iiv~~~~~~~~--~~-~~-~~-~~~~~~~~a~~i~~fsf--~~~~~ip~l~~~~~~~~k~----- 255 (383)
++.+.++.+++.++.+.+..+...++ +. .. .+ .....+..++... .++ ....+.+...++.+ ++++
T Consensus 167 ~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~-~~~~~~~~~~~~DysRy~~-~~~~~~~~~ 244 (501)
T 2jln_A 167 MNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIF-VGGWIAVVVSIHDIVKECK-VDPNASREG 244 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHH-HTTTHHHHTTTHHHHTTBC-CCTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHH-HHHHHHHHhccCcccccCC-CCccccccc
Confidence 99998888766655544323222222 11 11 11 1122233333222 222 22344566666664 3333
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhccCCccccccCHHHHHhh-c-CchhHHHHHH-HHHHHHHHHHHH-HHHH
Q 042761 256 -------LRASVLLGSLIPLLSLLVWDAISLGLSAQADQVIDPVELLMR-V-RWSGVSVMVE-AFSLMAVGTSLI-GTLL 324 (383)
Q Consensus 256 -------~~~ai~~~~~i~~~~Yi~~~~~~~g~~~~~~~~~~pl~~l~~-~-~~~~~~~~~~-~~~~~al~tS~~-g~~~ 324 (383)
..+...+|..+..++..+....+ +. + ....||...+.. . +..++..+.. +..+++..++-. ++.+
T Consensus 245 ~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~-~~-~--~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~y 320 (501)
T 2jln_A 245 QTKADARYATAQWLGMVPASIIFGFIGAAS-MV-L--VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLL 320 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-H--HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTH
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHHHH-HH-h--ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33334444444443333333221 11 1 233578776654 2 2233355566 666677655555 5788
Q ss_pred hHHHHHHHhhc
Q 042761 325 GFSEFFKEQLK 335 (383)
Q Consensus 325 ~l~~~l~~~~~ 335 (383)
+....+++.+.
T Consensus 321 s~~~~l~~~~~ 331 (501)
T 2jln_A 321 SPAYTLCSTFP 331 (501)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHhCc
Confidence 88877777754
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.74 E-value=7e-06 Score=83.25 Aligned_cols=287 Identities=14% Similarity=0.132 Sum_probs=149.5
Q ss_pred cccCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccc
Q 042761 34 NDQEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEV 112 (383)
Q Consensus 34 ~~~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~ 112 (383)
...|+.+++-..+.++++.+++. ++++|......|+....... ...+...+.++.++....+.+ .
T Consensus 17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~-------------~ 82 (530)
T 3dh4_A 17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-MSAITLIIVGKYFLPIFIEKG-------------I 82 (530)
T ss_dssp CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHH-HHHHHHHHHHHHTHHHHHHTT-------------C
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcC-------------C
Confidence 44678899999888999999988 56889887777864321111 111111223334444332221 2
Q ss_pred cCHHHHHHHHhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q 042761 113 ISIRTMAQETLGDWGGTLATVFYVF-LGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQW 191 (383)
Q Consensus 113 ~~~~~~a~~~~G~~~~~l~~~~~~~-~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~ 191 (383)
.++.|+.++-||+..+.+..+...+ +.+..+.+.+.+.+..++..+++|.+.+.++..++......+.|+|.+...+.+
T Consensus 83 ~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 83 YTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp CSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred ccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6999999999999888877765443 223333444556677888889999887776666554444434688777665555
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCC---------------CCCC---CCC--Cc---CcchhhhH-H--HHHH-HhhhccHH
Q 042761 192 LTASMIGLLVAIEVIAVV-VGGW---------------SGLD---GSG--NW---GKVPATIP-V--IIFS-LVYHDLAP 243 (383)
Q Consensus 192 ~~~~~i~~l~~iiv~~~~-~~~~---------------~~~~---~~~--~~---~~~~~a~~-i--~~fs-f~~~~~ip 243 (383)
-..++++..+++.+.+.. .++. +.++ .+. ++ .+....++ . .-+. +++.+.
T Consensus 163 Q~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~-- 240 (530)
T 3dh4_A 163 QVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQY-- 240 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCH--
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHH--
Confidence 444444322222211111 1111 0110 011 11 11111111 1 1112 222221
Q ss_pred HHHHHh-cCChhhHHHHHHHHHHHHHHHHH---HHHHHHhccC-----------------CccccccCHHHHHhhcCchh
Q 042761 244 VLCAYL-GGDLPRLRASVLLGSLIPLLSLL---VWDAISLGLS-----------------AQADQVIDPVELLMRVRWSG 302 (383)
Q Consensus 244 ~l~~~~-~~~~k~~~~ai~~~~~i~~~~Yi---~~~~~~~g~~-----------------~~~~~~~~pl~~l~~~~~~~ 302 (383)
.+++.+ .||+|+.+|+..++......+.+ +..++..... |..++.|..+-.+.+..+++
T Consensus 241 i~qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~~lp~~ 320 (530)
T 3dh4_A 241 IIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVG 320 (530)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHTTCCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHHHcchh
Confidence 234444 36888999988777654332221 1122211111 21112223332222344567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhhcc
Q 042761 303 VSVMVEAFSLMAVGTSLIGTLLGFSEFF-KEQLKS 336 (383)
Q Consensus 303 ~~~~~~~~~~~al~tS~~g~~~~l~~~l-~~~~~~ 336 (383)
+.-++....+.|+++|.-+...+.+..+ +|..++
T Consensus 321 l~Gl~~a~llAA~mST~ss~l~s~st~~~~Diy~~ 355 (530)
T 3dh4_A 321 VKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKE 355 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHH
Confidence 7777777888889999999888888877 566544
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.46 E-value=9.9e-05 Score=75.80 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=147.1
Q ss_pred cCCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCccccccccC
Q 042761 36 QEKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINVSLRRGKRKGEEENEFEVIS 114 (383)
Q Consensus 36 ~~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~~~~~~~~~~~~~~~~~~~~ 114 (383)
.|+.+++-..+-++++.+++. +++.|....+.|+....... ...+.....++.++....|.+ ..+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~-------------~~T 113 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEW-MSAITLIIVGKYFLPIFIEKG-------------IYT 113 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHH-HHHHHHHHHHHTHHHHHHHTT-------------CCS
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC-------------CCC
Confidence 467788888888888888888 46788877777764221111 111111223333443332221 269
Q ss_pred HHHHHHHHhchhhHHHHHHHHHH-HHHHHHHHHHHHhHhHhHhhhCCchhHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q 042761 115 IRTMAQETLGDWGGTLATVFYVF-LGYTSMIAYCSKSGEILYHLLNIPESVSGFLFTTVFTLLISIGGTRATDQFNQWLT 193 (383)
Q Consensus 115 ~~~~a~~~~G~~~~~l~~~~~~~-~~~~~~~ay~~~~g~~l~~~~~l~~~~~~ii~~l~~~~~~~~~g~k~~~~~~~~~~ 193 (383)
..|+.++-||+..+.+..+...+ +.+..+...+.+.+..++.++|+|.+.+.++..++......+.|+|.+...+.+-.
T Consensus 114 ~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~ 193 (593)
T 2xq2_A 114 IPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQV 193 (593)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred cHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999999999888777655442 22233334455677888888899988777666655454554578888766655544
Q ss_pred HHHHHHHHHHHHHHHh-hcC---------------CCCCC---CCCC-c----CcchhhhH---HHHHHH-hhhccHHHH
Q 042761 194 ASMIGLLVAIEVIAVV-VGG---------------WSGLD---GSGN-W----GKVPATIP---VIIFSL-VYHDLAPVL 245 (383)
Q Consensus 194 ~~~i~~l~~iiv~~~~-~~~---------------~~~~~---~~~~-~----~~~~~a~~---i~~fsf-~~~~~ip~l 245 (383)
..+++..+++.+.+.. .++ .+..+ .+.+ + ......++ +...+| +..+. ..
T Consensus 194 iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~--~~ 271 (593)
T 2xq2_A 194 FFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQY--II 271 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCS--HH
T ss_pred HHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChH--HH
Confidence 4444333222211111 111 01111 1111 0 00111111 111222 22221 22
Q ss_pred HHHh-cCChhhHHHHHHHHHHHHHHHHHHH---HHHHhcc-----------------CCccccccCHH-HHHhhcCchhH
Q 042761 246 CAYL-GGDLPRLRASVLLGSLIPLLSLLVW---DAISLGL-----------------SAQADQVIDPV-ELLMRVRWSGV 303 (383)
Q Consensus 246 ~~~~-~~~~k~~~~ai~~~~~i~~~~Yi~~---~~~~~g~-----------------~~~~~~~~~pl-~~l~~~~~~~~ 303 (383)
++.+ .||+|+.+|+..++......+++.. ..+.... .|..++.+..+ ... +..++++
T Consensus 272 qR~laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp~~l 350 (593)
T 2xq2_A 272 QRTLAAKSVSEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLPVGV 350 (593)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSCHHH
T ss_pred HHhheeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcChhH
Confidence 3444 3678999998887766544333321 1111111 22211112211 222 4446777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhhcc
Q 042761 304 SVMVEAFSLMAVGTSLIGTLLGFSEFF-KEQLKS 336 (383)
Q Consensus 304 ~~~~~~~~~~al~tS~~g~~~~l~~~l-~~~~~~ 336 (383)
.-++....+.|.++|.-+...+.+..+ +|..++
T Consensus 351 ~gl~~a~llaA~mST~~s~l~a~st~~~~Diy~~ 384 (593)
T 2xq2_A 351 KGVVFAALAAAIVSSLASMLNSTATIFTMDIYKE 384 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888888998888888888776 566543
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.66 E-value=0.036 Score=55.56 Aligned_cols=58 Identities=24% Similarity=0.371 Sum_probs=41.0
Q ss_pred CCccHHHHHHHHHhhhhhhh-hhhhHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042761 37 EKGTIAGAVALIIGTSIGSG-ILALPQKASPAGIFPSSLSLIVCWGFLLIEALILIEINV 95 (383)
Q Consensus 37 ~~~s~~~~~~~iigtiIGaG-IL~LP~a~~~~G~~~~~~~lll~~~~~~~~~~~l~e~~~ 95 (383)
+-.|-.+-++..+|..||-| +---|+...+.|...-++..+++- +..-.-.+++|.+.
T Consensus 7 ~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l-~~~GiPll~~E~al 65 (519)
T 2a65_A 7 HWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAF-LLVGIPLMWIEWAM 65 (519)
T ss_dssp CCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHH-HHTHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 34677888999999999999 788999988888644444444432 22345567778663
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=81.83 E-value=42 Score=33.12 Aligned_cols=26 Identities=8% Similarity=0.188 Sum_probs=22.7
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhhh
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILAL 60 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~L 60 (383)
+|++.|.++..++++.+-+|.|++.-
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhh
Confidence 56778999999999999999997753
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=73.60 E-value=36 Score=33.89 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=22.1
Q ss_pred ccCCccHHHHHHHHHhhhhhhhhhh
Q 042761 35 DQEKGTIAGAVALIIGTSIGSGILA 59 (383)
Q Consensus 35 ~~~~~s~~~~~~~iigtiIGaGIL~ 59 (383)
+|++.|.+++.++++.+-+|.|++.
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 4677899999999999999999874
No 10
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=11.73 E-value=25 Score=29.92 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.4
Q ss_pred CcccccccccccC
Q 042761 1 QWRQEQKLSITRK 13 (383)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (383)
+||+||+.+|-.|
T Consensus 104 kWREEq~kRLeek 116 (205)
T 3lvh_D 104 KWREEQRKRLQEL 116 (205)
T ss_dssp HHHHHHTTTSTHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999998554
Done!