BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042762
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C912|R35A3_ARATH 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC
PE=3 SV=1
Length = 112
Score = 167 bits (423), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 87/96 (90%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
TILGYKRSKSNQYPNTSL+QIEGVNT+E+V WY K +AYIYKAKTKK+ +HYRCIWGKV
Sbjct: 17 TILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKV 76
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
R HGNSGVVRA+F SNLPPKSMG +VRVFMYPSNI
Sbjct: 77 TRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9LMK0|R35A1_ARATH 60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA
PE=3 SV=1
Length = 112
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 86/96 (89%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
TILGYKRSKSNQYPNTSL+Q+EGVNT E+V WY K +AYIYKAKTKK+ +HYRCIWGKV
Sbjct: 17 TILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKV 76
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
R HGNSGVVRA+F SNLPPKSMG +VRVFMYPSNI
Sbjct: 77 TRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112
>sp|Q9FZH0|R35A2_ARATH 60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB
PE=3 SV=1
Length = 111
Score = 166 bits (421), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 79/96 (82%), Positives = 87/96 (90%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
T+LGYKRSKSNQYPNTSLIQIEGVNT+E+V WY K LAYIYKAKTKK+ +HYRCIWGKV
Sbjct: 16 TVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKV 75
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
R HGNSGVVR++F SNLPPKSMG +VRVFMYPSNI
Sbjct: 76 TRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P51422|R35A4_ARATH 60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD
PE=3 SV=2
Length = 111
Score = 166 bits (419), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 78/96 (81%), Positives = 87/96 (90%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
T+LGYKRSKSNQYPNTSL+QIEGVNT+E+V WY K LAYIYKAKTKK+ +HYRCIWGKV
Sbjct: 16 TVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKV 75
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
R HGNSGVVR++F SNLPPKSMG +VRVFMYPSNI
Sbjct: 76 TRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111
>sp|P41056|RL33B_YEAST 60S ribosomal protein L33-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33B PE=1 SV=2
Length = 107
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 67/94 (71%)
Query: 3 LGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVAR 62
L Y+RSK PN SLI+IEGV T ++ +Y K +AY+Y+A + + R +WGKV R
Sbjct: 14 LSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTR 73
Query: 63 SHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
+HGNSGVVRA F++NLP K+ G VR+F+YPSNI
Sbjct: 74 THGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|P05744|RL33A_YEAST 60S ribosomal protein L33-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL33A PE=1 SV=3
Length = 107
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/94 (53%), Positives = 66/94 (70%)
Query: 3 LGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVAR 62
L Y+RSK PN SLI+IEGV T + +Y K +AY+Y+A + + R +WGKV R
Sbjct: 14 LSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTR 73
Query: 63 SHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
+HGNSGVVRA F++NLP K+ G VR+F+YPSNI
Sbjct: 74 THGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107
>sp|Q55BN7|RL35A_DICDI 60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a
PE=3 SV=1
Length = 105
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYK-AKTKKSWTHYRCIWGK 59
+LGY+RS++ QYPN SLI+IEGV ++E +Y K + + K +K+ K+ T ++ WGK
Sbjct: 9 VVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGK 68
Query: 60 VARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
+ ++HG+SGVV+A F NLPPK+MG VRV +YPSNI
Sbjct: 69 ICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105
>sp|Q9USX4|RL33A_SCHPO 60S ribosomal protein L33-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33a PE=3 SV=2
Length = 108
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 64/94 (68%)
Query: 3 LGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVAR 62
L ++RSK +P TSL++IEG ++KE+ +Y K + ++YK+ + R IWG V+R
Sbjct: 15 LSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSR 74
Query: 63 SHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
HGNSGVVRA F NLPPK+ G +RV +YPSN+
Sbjct: 75 PHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108
>sp|P02434|RL35A_XENLA 60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2
Length = 110
Score = 99.4 bits (246), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 67/101 (66%), Gaps = 5/101 (4%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRC 55
T GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R
Sbjct: 10 TFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRTRV 69
Query: 56 IWGKVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
IWGKV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 70 IWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|Q90YT3|RL35A_ICTPU 60S ribosomal protein L35a OS=Ictalurus punctatus GN=rpl35a PE=3
SV=1
Length = 110
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/99 (50%), Positives = 70/99 (70%), Gaps = 7/99 (7%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWT------HYRCIW 57
GYKR NQ +T+L+++EGV ++ +V +Y K AY+YKAK K + T R IW
Sbjct: 13 GYKRGLRNQREHTALLKVEGVYSRNEVDFYLGKRCAYVYKAK-KTTVTPGGKPNKTRVIW 71
Query: 58 GKVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
GKV R+HGNSG+VRA+F SNLPPK++G ++RV +YPS +
Sbjct: 72 GKVTRAHGNSGMVRAKFTSNLPPKAIGHRIRVMLYPSRV 110
>sp|Q5R8K6|RL35A_PONAB 60S ribosomal protein L35a OS=Pongo abelii GN=RPL35A PE=3 SV=1
Length = 110
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
KV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P61272|RL35A_MACFA 60S ribosomal protein L35a OS=Macaca fascicularis GN=RPL35A PE=3
SV=1
Length = 110
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
KV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P18077|RL35A_HUMAN 60S ribosomal protein L35a OS=Homo sapiens GN=RPL35A PE=1 SV=2
Length = 110
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
KV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P49180|RL35A_CAEEL 60S ribosomal protein L35a OS=Caenorhabditis elegans GN=rpl-33 PE=1
SV=3
Length = 124
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKA--KTKKSW----THYRCIW 57
G+KR Q +TSL+++EGV KE +Y K + Y+YKA KT K+ T R IW
Sbjct: 26 GFKRGLRTQSEHTSLLKLEGVFNKEDAGFYAGKRVVYLYKAHNKTLKTGHTVATRTRAIW 85
Query: 58 GKVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
GK+ R HGN+G VRA+F N+PP ++G ++RV +YPSNI
Sbjct: 86 GKITRPHGNAGAVRAKFHHNIPPSALGKRIRVLLYPSNI 124
>sp|Q56JY1|RL35A_BOVIN 60S ribosomal protein L35a OS=Bos taurus GN=RPL35A PE=2 SV=1
Length = 110
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
K+ R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KITRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P04646|RL35A_RAT 60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1
Length = 110
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
KV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|O55142|RL35A_MOUSE 60S ribosomal protein L35a OS=Mus musculus GN=Rpl35a PE=2 SV=2
Length = 110
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSW-----THYRCIWG 58
GYKR NQ +T+L++IEGV +++ +Y K AY+YKAK R IWG
Sbjct: 13 GYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKTRVIWG 72
Query: 59 KVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
KV R+HGNSG+VRA+F+SNLP K++G ++RV +YPS I
Sbjct: 73 KVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110
>sp|P0DJ22|RL35A_TETTS 60S ribosomal protein L35a OS=Tetrahymena thermophila (strain
SB210) GN=RPL35A PE=1 SV=1
Length = 113
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 66/91 (72%), Gaps = 1/91 (1%)
Query: 4 GYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARS 63
G++RSK Q N +L++++ VNTKE V +Y K + YIYK + KK+ ++YR IWG++ ++
Sbjct: 22 GFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQ-KKNGSNYRTIWGRIGKA 80
Query: 64 HGNSGVVRAEFKSNLPPKSMGDKVRVFMYPS 94
HGN+GV A F NLPP+++G +RV +YP+
Sbjct: 81 HGNNGVAVARFAHNLPPQAIGSVLRVMLYPN 111
>sp|Q9USG6|RL33B_SCHPO 60S ribosomal protein L33-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl33b PE=1 SV=1
Length = 108
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 62/94 (65%)
Query: 3 LGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVAR 62
L ++RSK +P TS+++IEG ++KE+ +Y K + Y+YK+ + R IWG +AR
Sbjct: 15 LSFQRSKHVIHPGTSIVKIEGCDSKEEAQFYLGKRVCYVYKSSKAVRGSKIRVIWGTIAR 74
Query: 63 SHGNSGVVRAEFKSNLPPKSMGDKVRVFMYPSNI 96
HGNSG VRA F NLP K+ G +RV +YPSNI
Sbjct: 75 PHGNSGAVRARFVHNLPAKTFGSSLRVMLYPSNI 108
>sp|Q9V1P2|RL35A_PYRAB 50S ribosomal protein L35Ae OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl35ae PE=3 SV=1
Length = 87
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
+L Y+RSK NQ+ N +I+ VN++E+ + I+K+ + K + GK+
Sbjct: 6 VVLSYRRSKENQHTNVMIIKPLNVNSREEASKLIGR--LVIWKSPSGK------LLKGKI 57
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVF 90
R HG G VRA F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEII 87
>sp|O74099|RL35A_PYRHO 50S ribosomal protein L35Ae OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl35ae PE=3 SV=1
Length = 87
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
+L Y+RSK NQ+ N +I+ +N++E+ + + ++K+ + K + GK+
Sbjct: 6 VVLSYRRSKENQHTNVMIIKPLDINSREEASKLIGRLV--VWKSPSGK------VLKGKI 57
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVF 90
R HG G VRA F+ LP +++GD V +
Sbjct: 58 VRVHGTRGAVRARFEKGLPGQALGDYVEII 87
>sp|P20299|RL35A_PYRWO 50S ribosomal protein L35Ae OS=Pyrococcus woesei GN=rpl35ae PE=3
SV=1
Length = 87
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
+L Y+RSK NQ+ N +I+ VN++E+ + + ++K+ + K + GK+
Sbjct: 6 VVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLV--LWKSPSGK------ILKGKI 57
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVF 90
R HG G VRA F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|Q8TZV6|RL35A_PYRFU 50S ribosomal protein L35Ae OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl35ae PE=1 SV=1
Length = 87
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 8/90 (8%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
+L Y+RSK NQ+ N +I+ VN++E+ + ++K+ + K + GK+
Sbjct: 6 VVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGR--LVLWKSPSGK------ILKGKI 57
Query: 61 ARSHGNSGVVRAEFKSNLPPKSMGDKVRVF 90
R HG G VRA F+ LP +++GD V +
Sbjct: 58 VRVHGTKGAVRARFEKGLPGQALGDYVEIV 87
>sp|Q8TYY6|RL35A_METKA 50S ribosomal protein L35Ae OS=Methanopyrus kandleri (strain AV19
/ DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl35ae PE=3
SV=1
Length = 90
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 2 ILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVA 61
I+ Y+ + Q P +I+ EGV ++ + K + + + K I GKV
Sbjct: 9 IVNYRMGRHTQDPRQCIIEFEGVESRSEAAQLIGKEVIWKHPETGK-------VIRGKVV 61
Query: 62 RSHGNSGVVRAEFKSNLPPKSMGDKV 87
+HGN+G VR F+ LP +++G +V
Sbjct: 62 DTHGNNGAVRVRFERGLPGQALGTEV 87
>sp|Q9Y9G4|RL35A_AERPE 50S ribosomal protein L35Ae OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rpl35ae PE=3 SV=2
Length = 94
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKV 60
+LGY+R + QYP +L+++ ++ K Y +A+ Y+ + + G+V
Sbjct: 7 VVLGYRRGTNTQYPQHALVKLL-LDDPRKAGLYVSG-IAF-YRDRYGNVYK------GRV 57
Query: 61 ARSHG-NSGVVRAEFKSNLPPKSMGDKVRV 89
R HG GVV +F LP ++ G V V
Sbjct: 58 LRLHGRRGGVVVVKFNPPLPGQATGGVVEV 87
>sp|P01708|LV205_HUMAN Ig lambda chain V-II region BUR OS=Homo sapiens PE=1 SV=1
Length = 109
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 15 NTSLIQIEGVNTKEKVVWYCCKHL-AYIYKAKTK 47
NT+ + I G+ +++ +YCC ++ +Y++ TK
Sbjct: 71 NTASLTISGLQAEDEADYYCCSYIGSYVFGTGTK 104
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,402,952
Number of Sequences: 539616
Number of extensions: 1152074
Number of successful extensions: 2459
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2419
Number of HSP's gapped (non-prelim): 27
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)