Query 042762
Match_columns 96
No_of_seqs 108 out of 234
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 16:04:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042762.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042762hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_j 60S ribosomal protein L 100.0 1.4E-61 4.7E-66 338.4 6.7 96 1-96 16-111 (111)
2 3izc_j 60S ribosomal protein R 100.0 4.7E-62 1.6E-66 338.9 3.4 96 1-96 12-107 (107)
3 4a18_H RPL35A; ribosome, eukar 100.0 5.4E-60 1.9E-64 331.1 8.2 94 1-95 19-112 (113)
4 1sqr_A 50S ribosomal protein L 100.0 3.5E-53 1.2E-57 289.3 7.9 84 1-92 6-89 (95)
5 3j21_c 50S ribosomal protein L 100.0 1.1E-50 3.9E-55 273.3 8.2 81 1-89 6-86 (87)
6 1wb1_A Translation elongation 92.6 0.028 9.4E-07 45.1 0.7 68 12-94 413-480 (482)
7 3h9n_A Ribosome maturation fac 90.5 0.19 6.6E-06 35.8 3.1 59 14-73 56-131 (177)
8 2dyi_A Probable 16S rRNA-proce 90.0 0.2 6.8E-06 35.3 2.8 31 14-45 50-80 (162)
9 2qgg_A 16S rRNA-processing pro 89.6 0.22 7.7E-06 35.6 2.8 31 13-44 64-94 (182)
10 2f1l_A 16S rRNA processing pro 89.4 0.23 8E-06 35.9 2.8 32 13-45 73-104 (187)
11 3h9n_A Ribosome maturation fac 82.9 1.5 5E-05 31.2 4.1 28 54-81 2-29 (177)
12 3kdf_A Replication protein A 1 82.0 7.8 0.00027 26.1 7.4 45 28-89 15-69 (121)
13 2qgg_A 16S rRNA-processing pro 81.3 1.8 6.2E-05 30.8 4.2 27 54-80 11-37 (182)
14 4gop_A Putative uncharacterize 80.9 6 0.0002 26.4 6.4 45 29-90 12-64 (114)
15 2dyi_A Probable 16S rRNA-proce 80.4 1.5 5E-05 30.8 3.3 21 55-76 4-24 (162)
16 2f1l_A 16S rRNA processing pro 78.9 2.4 8.2E-05 30.5 4.2 27 54-80 20-46 (187)
17 1xk5_A Snurportin-1; protein-R 67.7 6.1 0.00021 29.3 4.1 35 34-82 30-64 (204)
18 2bjq_A MFP2A; motility, nemato 61.1 16 0.00053 29.4 5.5 49 35-94 31-83 (345)
19 3kxt_A Chromatin protein CREN7 54.4 7.3 0.00025 23.8 2.0 18 60-77 23-40 (56)
20 2pi2_E Replication protein A 1 50.9 46 0.0016 23.0 6.0 44 30-90 38-91 (142)
21 3gjx_B Snurportin-1; transport 40.0 30 0.001 27.9 4.1 60 10-83 100-166 (365)
22 2zkq_q 40S ribosomal protein S 33.8 63 0.0021 23.1 4.5 63 23-90 43-129 (158)
23 3aqo_A Probable secdf protein- 32.9 17 0.00059 26.6 1.5 33 12-44 49-83 (229)
24 2lfe_A E3 ubiquitin-protein li 29.9 21 0.00073 25.2 1.5 11 63-73 119-129 (138)
25 2vc8_A Enhancer of mRNA-decapp 28.3 89 0.003 20.3 4.2 46 29-81 3-50 (84)
26 2bjr_A MFP2B; motility, nemato 27.3 50 0.0017 26.7 3.4 47 37-94 34-84 (368)
27 2xzm_Q Ribosomal protein S17 c 22.2 1E+02 0.0034 22.0 3.9 63 23-90 40-125 (157)
No 1
>3iz5_j 60S ribosomal protein L35A (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_j
Probab=100.00 E-value=1.4e-61 Score=338.40 Aligned_cols=96 Identities=77% Similarity=1.227 Sum_probs=87.9
Q ss_pred CeeeccccCCCCCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 1 ~~~gykRg~~~Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
+|+|||||++||+|||||||||||+++|||+||||||||||||++++++|+|+|+|||||+|+|||||+|||+|++||||
T Consensus 16 v~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~R~iwGKVtR~HGnsGvVrAkF~~nLP~ 95 (111)
T 3iz5_j 16 TILGYKRSKSNQYENTSLLQIEGVNTKEEVGWYAGKRIAYVYKAKTKSNDSTIRCIWGKVTRPHGNSGVVRAKFRSNLPP 95 (111)
T ss_dssp EEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTSCCCCEECCCCCSSSCCCCSCCEECEEEEESSSSSCEEEECSSCCST
T ss_pred EEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCcEEEEEEeccccCCCceEEEEEEEEEeeeCCCCEEEEEeCCCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeecCC
Q 042762 81 KSMGDKVRVFMYPSNI 96 (96)
Q Consensus 81 ~aiG~~vrVmLyps~i 96 (96)
||||++||||||||+|
T Consensus 96 kA~G~~VrVmLyps~i 111 (111)
T 3iz5_j 96 TSMGKKVRVFMYPSSI 111 (111)
T ss_dssp TCCSSCBCC-------
T ss_pred HHcCCEEEEEEecCCC
Confidence 9999999999999997
No 2
>3izc_j 60S ribosomal protein RPL33 (L35AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_j 3u5e_f 3u5i_f 4b6a_f
Probab=100.00 E-value=4.7e-62 Score=338.94 Aligned_cols=96 Identities=52% Similarity=0.920 Sum_probs=88.0
Q ss_pred CeeeccccCCCCCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 1 ~~~gykRg~~~Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
+|+|||||++||+|||||||||||+++|||+||||||||||||++++++|||+|+|||||+|+|||||+|||+|++||||
T Consensus 12 v~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~~~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~ 91 (107)
T 3izc_j 12 KHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPA 91 (107)
T ss_dssp EEEEEECCCSTTCCCEEEEEESSCSTTHHHHTTCCCCCCCCCCCCSSSCCCCSCCCCCCEEECSSSSSCEEECCCSCCST
T ss_pred EEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCEEEEEEecCcccCCceEEEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeecCC
Q 042762 81 KSMGDKVRVFMYPSNI 96 (96)
Q Consensus 81 ~aiG~~vrVmLyps~i 96 (96)
||||++||||||||+|
T Consensus 92 kA~G~~VrVmLyps~i 107 (107)
T 3izc_j 92 KTFGASVRIFLYPSNI 107 (107)
T ss_dssp TCCSSCBCC-------
T ss_pred HHcCCeEEEEEecCCC
Confidence 9999999999999997
No 3
>4a18_H RPL35A; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_H 4a1b_H 4a1d_H
Probab=100.00 E-value=5.4e-60 Score=331.14 Aligned_cols=94 Identities=44% Similarity=0.892 Sum_probs=92.2
Q ss_pred CeeeccccCCCCCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 1 ~~~gykRg~~~Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
+|+|||||++||+|||||||||||+++|||+||||||||||||++++ .|+|+|+|||||+|+|||||+|||+|++||||
T Consensus 19 v~lgYkRg~~nQ~~~taLlKIeGV~~~~~a~fylGKrvayvykak~~-~g~k~RviwGKVtR~HGnsGvVrAkF~~nLP~ 97 (113)
T 4a18_H 19 AFTGFRRSKHTQNSNQALLKLQNVNTKEDVAFYQGKRVVYIYKGQKK-NGSNYRTIWGRIGKAHGNNGVAVARFAHNLPP 97 (113)
T ss_dssp EEEEEEEETTEEEEEEEEEEETTCCSHHHHHTTTTCEEEEEEEEEEE-TTEEEEEEEEEEEEEETTTTEEEEEESSCCCG
T ss_pred EEEecccccCCCCCCeEEEEEcCcCCHHHHHhhcCCeEEEEEecCCC-CCCeEEEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 58999999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred cCCCCeEEEEEeecC
Q 042762 81 KSMGDKVRVFMYPSN 95 (96)
Q Consensus 81 ~aiG~~vrVmLyps~ 95 (96)
||||++||||||||+
T Consensus 98 kA~G~~VrVmLyPs~ 112 (113)
T 4a18_H 98 QAIGSVLRVMLYPNR 112 (113)
T ss_dssp GGGGSEEEEECCCCC
T ss_pred HHcCCeEEEEEecCC
Confidence 999999999999997
No 4
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=100.00 E-value=3.5e-53 Score=289.32 Aligned_cols=84 Identities=32% Similarity=0.538 Sum_probs=80.4
Q ss_pred CeeeccccCCCCCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 1 ~~~gykRg~~~Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
+|+|||||++||+|||||||||||+++|||+||||||||||||++ |+|||||||||||||+|||+|++||||
T Consensus 6 v~lgYkRg~~nQ~~~~aLlkIegV~~k~~a~fYlGKrvayvyka~--------rviwGKVtR~HGnsGvVrAkF~~nLP~ 77 (95)
T 1sqr_A 6 VVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPSG--------KILKGKIVRVHGTKGAVRARFEKGLPG 77 (95)
T ss_dssp EEEEEECCSSSSSCCEEEEEESCCCCHHHHHHHTTCEEEECCSTT--------CCEEEEEEEESSSSSCEEEECSSCCSS
T ss_pred EEEeeccccCcCCCceEEEEEcCCCCHHHHHhhcCCeEEEEECCC--------CEEEEEEEeeeCCCCEEEEEeCCCCCh
Confidence 589999999999999999999999999999999999999999885 799999999999999999999999999
Q ss_pred cCCCCeEEEEEe
Q 042762 81 KSMGDKVRVFMY 92 (96)
Q Consensus 81 ~aiG~~vrVmLy 92 (96)
||||++|||||-
T Consensus 78 kA~G~~VrVml~ 89 (95)
T 1sqr_A 78 QALGDYVEIVLE 89 (95)
T ss_dssp SCTTCEEECC--
T ss_pred HHcCCEEEEEEe
Confidence 999999999984
No 5
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=100.00 E-value=1.1e-50 Score=273.26 Aligned_cols=81 Identities=33% Similarity=0.546 Sum_probs=77.7
Q ss_pred CeeeccccCCCCCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 1 TILGYKRSKSNQYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 1 ~~~gykRg~~~Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
+|+|||||++||+|||||||||||+++|||+|||||||||||++ | ++|||||+|+|||||+|||+|++||||
T Consensus 6 ~~~gykRg~~nQ~~~taLlkieGV~~~~~a~fylGKrvayv~~~-----g---~~iwGKVtr~HGnsGvVrAkF~~nLP~ 77 (87)
T 3j21_c 6 VVLSYRRSKENQHNNVMIIKPLDVNSREEASKLIGRLVLWKSPS-----G---KILKGKIVRVHGTKGAVRARFEKGLPG 77 (87)
T ss_dssp EEEEESCCSSCCCTTCEEEEESSCCSHHHHGGGTTCEEEECCSS-----S---CCEEEEEEEECCSSSCEEEEESSCCCS
T ss_pred EEEecccccCcCCCCeEEEEEcCcCCHHHHHhhcCceEEEEeCC-----C---CEEEEEEEeeeCCCCeEEEEeCCCCCh
Confidence 58999999999999999999999999999999999999999975 3 389999999999999999999999999
Q ss_pred cCCCCeEEE
Q 042762 81 KSMGDKVRV 89 (96)
Q Consensus 81 ~aiG~~vrV 89 (96)
||||++|||
T Consensus 78 ~a~G~~Vri 86 (87)
T 3j21_c 78 QALGDYVEI 86 (87)
T ss_dssp SCSCCEECC
T ss_pred HHcCCeEEe
Confidence 999999987
No 6
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=92.64 E-value=0.028 Score=45.11 Aligned_cols=68 Identities=21% Similarity=0.232 Sum_probs=51.2
Q ss_pred CCCCeeEEEecCcCChhhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCccCCCCeEEEEE
Q 042762 12 QYPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPPKSMGDKVRVFM 91 (96)
Q Consensus 12 Q~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~~aiG~~vrVmL 91 (96)
++.++++++=- ..+..|.++|+|.+|-- + .| -|+|.|..+.|.||.++|.|.-.|.++ +.|..-|
T Consensus 413 ~~~~~~i~~~l-f~~~~~~~~f~g~~v~~--~-----~g----~~~G~I~~~fg~~G~~~~~f~~~~~~~---d~v~~~~ 477 (482)
T 1wb1_A 413 IDKGRTVIDGL-AQSKVAAEKLIGEEISI--E-----GK----DIVGKIKGTFGTKGLLTAEFSGNVENR---DKVILNR 477 (482)
T ss_dssp CCSSCCEETTS-CSSHHHHHHSCSCCCEE--T-----TT----CCCBCCCCCBTTTTBBCCCBSSCCCSS---CEEEEEC
T ss_pred EcCCEEEEEcC-ccchhhhHHhcCcEEEE--c-----CC----ceEEEEeccCCCCceEEEEecCCCCCC---Ceeeeeh
Confidence 46677776622 45667899999999965 2 23 256999999999999999999998865 5666666
Q ss_pred eec
Q 042762 92 YPS 94 (96)
Q Consensus 92 yps 94 (96)
|..
T Consensus 478 ~~~ 480 (482)
T 1wb1_A 478 LRR 480 (482)
T ss_dssp CCS
T ss_pred hhc
Confidence 643
No 7
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=90.46 E-value=0.19 Score=35.79 Aligned_cols=59 Identities=12% Similarity=0.152 Sum_probs=39.8
Q ss_pred CCeeEEEecCcCChhhhhhhccceEEEEEecccCC-----------CCceeE----EEEEEEEcee--CCCceEEEE
Q 042762 14 PNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAKTKK-----------SWTHYR----CIWGKVARSH--GNSGVVRAE 73 (96)
Q Consensus 14 ~~~aLlKiegV~~~~~a~fylGKrvayvyk~k~~~-----------~g~k~R----~iwGkV~r~H--GnsGvVrAk 73 (96)
.+..|+|++||+|+++|+.+.|..+ ||-++.-.. -|-... ...|+|+... |.+-+...+
T Consensus 56 ~~~~lvkf~gi~dr~~Ae~L~G~~l-~v~~~~lp~l~edE~Y~~dLiGl~V~~~~g~~lG~V~~v~~~gandvl~V~ 131 (177)
T 3h9n_A 56 NHEIIVKLKGVDDREAAQILANVEI-GVDLSVFPELEEGDYYWHDLIGCTVVNLEGYTMGTVTEMMETGSNDVLVVK 131 (177)
T ss_dssp SSCEEEEESSCCSHHHHHTTTTCEE-EEECCCCCCCSSSCGGGGGTTTCEEEETTCCEEEEEEEEEESSSCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHhcCCEE-EEEHHHCCCCCCCCCCHHHhcCCEEEeCCCCEEEEEEEEeeCCCcEEEEEE
Confidence 4678999999999999999999998 666653210 122111 2478888765 445555555
No 8
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=90.05 E-value=0.2 Score=35.33 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=26.2
Q ss_pred CCeeEEEecCcCChhhhhhhccceEEEEEecc
Q 042762 14 PNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAK 45 (96)
Q Consensus 14 ~~~aLlKiegV~~~~~a~fylGKrvayvyk~k 45 (96)
.+..|+|++||+|+++|+.+.|..+ ||-++.
T Consensus 50 ~~~~ivkf~gi~~r~~Ae~L~G~~l-~v~~~~ 80 (162)
T 2dyi_A 50 GEELVVHLAGVTDRTLAEALVGLRV-YAEVAD 80 (162)
T ss_dssp TTEEEEEETTCCSHHHHHTTTTCEE-EEEGGG
T ss_pred CCEEEEEEcCCCCHHHHHHhCCCEE-EEEHHH
Confidence 5679999999999999999999987 555543
No 9
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=89.56 E-value=0.22 Score=35.60 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=26.1
Q ss_pred CCCeeEEEecCcCChhhhhhhccceEEEEEec
Q 042762 13 YPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKA 44 (96)
Q Consensus 13 ~~~~aLlKiegV~~~~~a~fylGKrvayvyk~ 44 (96)
+.+..|+|++||+|+++|+.+.|..+ ||-++
T Consensus 64 ~~~~~ivkf~gi~dr~~Ae~L~G~~l-~v~~~ 94 (182)
T 2qgg_A 64 HGKGLVVSLKGVSDRTGAESLVASNI-WIAKS 94 (182)
T ss_dssp ETTEEEEEETTCCSHHHHHTTTTCEE-EEETT
T ss_pred cCCEEEEEECCCCCHHHHHHhCCCEE-EEEHH
Confidence 35678999999999999999999977 55554
No 10
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=89.35 E-value=0.23 Score=35.88 Aligned_cols=32 Identities=9% Similarity=0.212 Sum_probs=26.5
Q ss_pred CCCeeEEEecCcCChhhhhhhccceEEEEEecc
Q 042762 13 YPNTSLIQIEGVNTKEKVVWYCCKHLAYIYKAK 45 (96)
Q Consensus 13 ~~~~aLlKiegV~~~~~a~fylGKrvayvyk~k 45 (96)
+.+..|+|++||+|+++|+.+.|..+ ||-++.
T Consensus 73 ~~~~~ivkf~gi~dr~~Ae~L~G~~l-~v~r~~ 104 (187)
T 2f1l_A 73 HGKVLAAKLKGLDDREEARTFTGYEI-CIPRSE 104 (187)
T ss_dssp ETTEEEEEETTCCSHHHHHTTTTCEE-EEEGGG
T ss_pred ECCEEEEEEeCCCCHHHHHHhCCCEE-EEEHHH
Confidence 35679999999999999999999977 555543
No 11
>3h9n_A Ribosome maturation factor RIMM; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.70A {Haemophilus influenzae}
Probab=82.94 E-value=1.5 Score=31.17 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=24.0
Q ss_pred EEEEEEEEceeCCCceEEEEeCCCCCcc
Q 042762 54 RCIWGKVARSHGNSGVVRAEFKSNLPPK 81 (96)
Q Consensus 54 R~iwGkV~r~HGnsGvVrAkF~~nLP~~ 81 (96)
++..|+|.++||-.|.|+..-...-|-.
T Consensus 2 ~v~vG~I~~~hGikGevkv~~~Td~pe~ 29 (177)
T 3h9n_A 2 IEVVGKLGSTYGIRGWLRIYSSTEQAES 29 (177)
T ss_dssp EEEEEEEEEECSSSSCEEEEECSSSSGG
T ss_pred EEEEEEEeCCCccCEEEEEEECCCCHHH
Confidence 4678999999999999999877777654
No 12
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=82.04 E-value=7.8 Score=26.15 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=31.2
Q ss_pred hhhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCC----------CceEEEEeCCCCCccCCCCeEEE
Q 042762 28 EKVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGN----------SGVVRAEFKSNLPPKSMGDKVRV 89 (96)
Q Consensus 28 ~~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGn----------sGvVrAkF~~nLP~~aiG~~vrV 89 (96)
+.=..|+||.| .++|||.+.|.+ .|.|..++...|+... +.-|.|
T Consensus 15 s~L~~fvgk~V----------------rivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~~p~~~~l-~~~vEV 69 (121)
T 3kdf_A 15 GMLAQFIDKPV----------------CFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEI-SGIVEV 69 (121)
T ss_dssp GGGGGGTTCEE----------------EEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSSCC-CSEEEE
T ss_pred HHHHhhCCCeE----------------EEEEEEEEEcCCCCEEEEEeCCCCEEEEEeCCCCCccc-CcEEEE
Confidence 33456888877 567999999843 3789999988665433 556655
No 13
>2qgg_A 16S rRNA-processing protein RIMM; X-RAY, NESG, ASR73, structural genomics, PSI-2, protein structure initiative; 2.40A {Acinetobacter calcoaceticus}
Probab=81.29 E-value=1.8 Score=30.77 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=23.7
Q ss_pred EEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 54 RCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 54 R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
.+..|+|.++||-.|-|+.+-.+.-|.
T Consensus 11 ~v~vG~I~~~hGikGevkv~~~td~pe 37 (182)
T 2qgg_A 11 RIQIGQLRSAYGLNGWLWVYSNTEPMS 37 (182)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCcccCEEEEEEECCCCHH
Confidence 478899999999999999988877664
No 14
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=80.90 E-value=6 Score=26.37 Aligned_cols=45 Identities=24% Similarity=0.268 Sum_probs=32.3
Q ss_pred hhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCC--------ceEEEEeCCCCCccCCCCeEEEE
Q 042762 29 KVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNS--------GVVRAEFKSNLPPKSMGDKVRVF 90 (96)
Q Consensus 29 ~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGns--------GvVrAkF~~nLP~~aiG~~vrVm 90 (96)
.-..|+|+.| .|.|||+..||+. |.|..++.++++.+ ++.-|.|.
T Consensus 12 ~L~~~~g~~V----------------rivGkV~~~~g~~~~l~s~d~~~Vtv~l~~~~~~~-~~~~vEVi 64 (114)
T 4gop_A 12 MLGQYVGQTV----------------RIVGKVHKVTGNTLLMQTSDLGNVEIAMTPDSDVS-SSTFVEVT 64 (114)
T ss_dssp TGGGGTTSEE----------------EEEEEEEEEETTEEEEECTTSCEEEEECCSSCCGG-GCSEEEEE
T ss_pred HHHhhCCCeE----------------EEEEEEeeeCCCEEEEEeCCCCEEEEEeCCCCCcc-cCcEEEEE
Confidence 3456777776 4668999998863 77888888877754 67777664
No 15
>2dyi_A Probable 16S rRNA-processing protein RIMM; ribosomal protein S19, PRC-barrel, STRU genomics, NPPSFA; 2.00A {Thermus thermophilus} PDB: 3a1p_A 2dog_A
Probab=80.38 E-value=1.5 Score=30.78 Aligned_cols=21 Identities=14% Similarity=0.066 Sum_probs=18.6
Q ss_pred EEEEEEEceeCCCceEEEEeCC
Q 042762 55 CIWGKVARSHGNSGVVRAEFKS 76 (96)
Q Consensus 55 ~iwGkV~r~HGnsGvVrAkF~~ 76 (96)
+..|+|.++||-.|.|+. |--
T Consensus 4 v~vG~I~~~hGikGevkv-~td 24 (162)
T 2dyi_A 4 VEIGRFGAPYALKGGLRF-RGE 24 (162)
T ss_dssp EEEEEEEEECSSSSCEEE-EEC
T ss_pred EEEEEEeCCCccCeEEEE-EEc
Confidence 668999999999999999 654
No 16
>2f1l_A 16S rRNA processing protein; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative, PS unknown function; HET: UNL; 2.46A {Pseudomonas aeruginosa} SCOP: b.41.1.4 b.43.3.4
Probab=78.88 E-value=2.4 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=23.9
Q ss_pred EEEEEEEEceeCCCceEEEEeCCCCCc
Q 042762 54 RCIWGKVARSHGNSGVVRAEFKSNLPP 80 (96)
Q Consensus 54 R~iwGkV~r~HGnsGvVrAkF~~nLP~ 80 (96)
.+..|+|.++||-.|.|+.+-...-|.
T Consensus 20 ~v~VG~I~~~hGikGeVkV~~~Td~pe 46 (187)
T 2f1l_A 20 LVVIGKIVSVYGIRGEVKVYSFTDPLD 46 (187)
T ss_dssp EEEEEEEEEEETTTTEEEEEECSSSGG
T ss_pred EEEEEEEeCCEeeCEEEEEEECCCCHH
Confidence 578899999999999999988888763
No 17
>1xk5_A Snurportin-1; protein-RNA-complex, transport protein; HET: TPG; 2.40A {Homo sapiens}
Probab=67.74 E-value=6.1 Score=29.31 Aligned_cols=35 Identities=20% Similarity=0.145 Sum_probs=26.9
Q ss_pred ccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCccC
Q 042762 34 CCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPPKS 82 (96)
Q Consensus 34 lGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~~a 82 (96)
+||||.-|... | .|.+.-.+|....+|.++||+-.
T Consensus 30 ~GkRcLvva~~-----G---------~T~~~~k~G~~~~~F~S~LPgG~ 64 (204)
T 1xk5_A 30 VGKRALIVASR-----G---------STSAYTKSGYCVNRFSSLLPGGN 64 (204)
T ss_dssp SSEEEEEEEET-----T---------EEEEECTTSCEEEEECCSSSSSC
T ss_pred CCcEEEEEecC-----C---------eEEEECCCCcEEEEEcccCCCCC
Confidence 59999876532 3 25567789999999999999854
No 18
>2bjq_A MFP2A; motility, nematode, MSP; 1.75A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=61.14 E-value=16 Score=29.40 Aligned_cols=49 Identities=18% Similarity=0.308 Sum_probs=38.1
Q ss_pred cceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeC----CCCCccCCCCeEEEEEeec
Q 042762 35 CKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFK----SNLPPKSMGDKVRVFMYPS 94 (96)
Q Consensus 35 GKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~----~nLP~~aiG~~vrVmLyps 94 (96)
-.+||-+||. | +.+-|+.. .|+|+|-|-|- .+--++..|.++.|..|+-
T Consensus 31 N~yvALwyKs-----G---k~vlGRaW---n~~G~V~csF~~~~~E~~g~~~~~GsiQiL~~~~ 83 (345)
T 2bjq_A 31 NMYVALWYKF-----G---KPIHGRAW---NDNGNVECSFPYNKVELTGARDLGGQIQILTATE 83 (345)
T ss_dssp SCEEEEEEET-----T---EEEEEEEE---EETTEEEEEEEETTEEECCTTTTTSEEEEEECSC
T ss_pred ceEEEEEEEc-----C---cEEEeeee---cCCCcEEEEeecCCcccccccccCCeEEEEEeCC
Confidence 5789999987 4 37888765 88999999994 3345668999999888763
No 19
>3kxt_A Chromatin protein CREN7; protein-DNA complex, crenarchaea chromatin protein, minor-GR binding, methylation; 1.60A {Sulfolobus solfataricus} PDB: 2jtm_A 3lwh_A* 3lwi_A*
Probab=54.39 E-value=7.3 Score=23.85 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=16.3
Q ss_pred EEceeCCCceEEEEeCCC
Q 042762 60 VARSHGNSGVVRAEFKSN 77 (96)
Q Consensus 60 V~r~HGnsGvVrAkF~~n 77 (96)
+..|||..|++.+-|+..
T Consensus 23 vL~P~GrkGVkIgLFk~P 40 (56)
T 3kxt_A 23 ALAPKGRKGVKIGLFKDP 40 (56)
T ss_dssp EECCTTSCCEEEEEEECT
T ss_pred EEcCCCCCceEEEEEECC
Confidence 678999999999999964
No 20
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=50.87 E-value=46 Score=22.98 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=28.1
Q ss_pred hhhhccceEEEEEecccCCCCceeEEEEEEEEce--eCC--------CceEEEEeCCCCCccCCCCeEEEE
Q 042762 30 VVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARS--HGN--------SGVVRAEFKSNLPPKSMGDKVRVF 90 (96)
Q Consensus 30 a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~--HGn--------sGvVrAkF~~nLP~~aiG~~vrVm 90 (96)
=..|+||.| .+.|||++. .|. .+.|.+.+.+.|.. ..+.-|.|.
T Consensus 38 L~~fvGk~V----------------riVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~~pL~~-~~~~~VEVi 91 (142)
T 2pi2_E 38 LAQFIDKPV----------------CFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDE-EISGIVEVV 91 (142)
T ss_dssp GGGSTTCEE----------------EEEEEEEEECTTSSEEEEECTTSCEEEEECSSCCSS-CCCSEEEEE
T ss_pred HHhhCCCEE----------------EEEEEEeEEcCCCCEEEEEeCCCcEEEEEeCCCCCc-cCCCEEEEE
Confidence 356777777 456788877 343 36788888765533 346777664
No 21
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B 2qna_B
Probab=40.04 E-value=30 Score=27.89 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=36.6
Q ss_pred CCCCCCeeEEE--ecCcCChhhhhhh-----ccceEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCCCCCccC
Q 042762 10 SNQYPNTSLIQ--IEGVNTKEKVVWY-----CCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKSNLPPKS 82 (96)
Q Consensus 10 ~~Q~~~~aLlK--iegV~~~~~a~fy-----lGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~nLP~~a 82 (96)
...+-|+..+- +..+-+-=+..|+ +||||.-|... |+ |.+.-.+|-...+|.++||+-.
T Consensus 100 ~k~yanqlMlsEWl~dvP~dL~~~W~~vpcPvGkRcLVVas~-----G~---------T~aysk~G~~l~~F~S~LPGG~ 165 (365)
T 3gjx_B 100 PKHYANQLMLSEWLIDVPSDLGQEWIVVVCPVGKRALIVASR-----GS---------TSAYTKSGYCVNRFSSLLPGGN 165 (365)
T ss_dssp CCSSSSCSEEEEECCSCCTTHHHHEEEEEEESSEEEEEEEET-----TE---------EEEECTTCCEEEEECCSSTTTC
T ss_pred cHHHHhhHHHHHhcccCCcccccCeeEEeccCCcEEEEEecC-----ce---------EEEECCCCCEEeeeCCCCCCCC
Confidence 45566665442 2223331123555 59999876532 32 3345679999999999999954
Q ss_pred C
Q 042762 83 M 83 (96)
Q Consensus 83 i 83 (96)
-
T Consensus 166 ~ 166 (365)
T 3gjx_B 166 R 166 (365)
T ss_dssp C
T ss_pred c
Confidence 3
No 22
>2zkq_q 40S ribosomal protein S11E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3jyv_Q* 1s1h_Q
Probab=33.77 E-value=63 Score=23.13 Aligned_cols=63 Identities=22% Similarity=0.363 Sum_probs=24.0
Q ss_pred CcCChhhhh--hhccceEEEEEecccCCCCceeEEEEEEEEceeCCCce-EEEEeCC-----------------CCCc--
Q 042762 23 GVNTKEKVV--WYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGV-VRAEFKS-----------------NLPP-- 80 (96)
Q Consensus 23 gV~~~~~a~--fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGv-VrAkF~~-----------------nLP~-- 80 (96)
|+.+++||- .|+-++|-| -..-...| |++-|.|+..-.+.=+ |+..+.. ..|+
T Consensus 43 ~~k~P~~~~~~~~~D~kCPf--~G~lsvRG---r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDe~~n 117 (158)
T 2zkq_q 43 GFKTPKEAIEGTYIDKKCPF--TGNVSIRG---RILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCF 117 (158)
T ss_dssp ---------------------------------CEEEEEEEECSSSCEEEEEEEEECSSTTCCCEEEEEEEECCBCCSSC
T ss_pred CccCChHHhcccccCCCCCC--ccccceee---EEEEEEEEEccCCccEEEEEEEEEecCccceeeecceeEEEECCccc
Confidence 788887765 499999988 33333345 6889999987665443 4444333 4443
Q ss_pred --cCCCCeEEEE
Q 042762 81 --KSMGDKVRVF 90 (96)
Q Consensus 81 --~aiG~~vrVm 90 (96)
--+|+.|+||
T Consensus 118 ~~~kvGD~V~I~ 129 (158)
T 2zkq_q 118 RDVQIGDIVTVG 129 (158)
T ss_dssp CCC-CCCEEEEE
T ss_pred CcCCCCCEEEEE
Confidence 6689999887
No 23
>3aqo_A Probable secdf protein-export membrane protein; periplasmic domain, translocon, cell membrane, M protein transport, translocation; 2.60A {Thermus thermophilus}
Probab=32.92 E-value=17 Score=26.62 Aligned_cols=33 Identities=6% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCeeEEEecCcCChhh--hhhhccceEEEEEec
Q 042762 12 QYPNTSLIQIEGVNTKEK--VVWYCCKHLAYIYKA 44 (96)
Q Consensus 12 Q~~~~aLlKiegV~~~~~--a~fylGKrvayvyk~ 44 (96)
|-.+.-+|.++|+.+.++ |...||+.--.-++.
T Consensus 49 ~G~~rI~VelPGv~d~~~~~a~~llg~ta~LeFr~ 83 (229)
T 3aqo_A 49 QGQKRIVVELPGLSQADQDRALKLIGQRAVLEFRI 83 (229)
T ss_dssp ETTTEEEEEECSCCHHHHHHHHHHHHCCCCEEEEE
T ss_pred eCCCeEEEECCCCCCHHHHHHHHHhCCceEEEEEE
Confidence 456789999999999999 999999876655553
No 24
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast structural genomics consortiu SGC; NMR {Homo sapiens}
Probab=29.89 E-value=21 Score=25.23 Aligned_cols=11 Identities=55% Similarity=0.776 Sum_probs=10.0
Q ss_pred eeCCCceEEEE
Q 042762 63 SHGNSGVVRAE 73 (96)
Q Consensus 63 ~HGnsGvVrAk 73 (96)
-||+||.+||-
T Consensus 119 Yhg~SgaLRAt 129 (138)
T 2lfe_A 119 YHGISGALRAT 129 (138)
T ss_dssp EETTTTEEEEE
T ss_pred ecCcccceeec
Confidence 69999999995
No 25
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=28.35 E-value=89 Score=20.29 Aligned_cols=46 Identities=9% Similarity=-0.016 Sum_probs=31.1
Q ss_pred hhhhhccceEEEEEecccCCCCceeEEEEEEEEceeCCCceE--EEEeCCCCCcc
Q 042762 29 KVVWYCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVV--RAEFKSNLPPK 81 (96)
Q Consensus 29 ~a~fylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvV--rAkF~~nLP~~ 81 (96)
.|+.|||+-|.-..+. .-| ++-|+|...-=.++.+ +=-|+..+|++
T Consensus 3 Ma~~~iGs~VSi~c~d---~lG----vYQG~i~~vd~~~~tItL~~~f~NG~~~~ 50 (84)
T 2vc8_A 3 MATDWLGSIVSINCGD---SLG----VYQGRVSAVDQVSQTISLTRPFHNGVKCL 50 (84)
T ss_dssp --CTTTTCEEEEECCT---TTC----EEEEEEEEEETTTTEEEEEEEEETTEECS
T ss_pred ccccccCCEEEEEECC---Cce----EEEEEEEEeccCCCeEEEehhhhCCCCCC
Confidence 5789999999874433 234 8999999887655443 33388888765
No 26
>2bjr_A MFP2B; motility, nematode, MSP; 1.8A {Ascaris suum} SCOP: b.169.1.1 b.169.1.1
Probab=27.30 E-value=50 Score=26.71 Aligned_cols=47 Identities=28% Similarity=0.447 Sum_probs=34.4
Q ss_pred eEEEEEecccCCCCceeEEEEEEEEceeCCCceEEEEeCC----CCCccCCCCeEEEEEeec
Q 042762 37 HLAYIYKAKTKKSWTHYRCIWGKVARSHGNSGVVRAEFKS----NLPPKSMGDKVRVFMYPS 94 (96)
Q Consensus 37 rvayvyk~k~~~~g~k~R~iwGkV~r~HGnsGvVrAkF~~----nLP~~aiG~~vrVmLyps 94 (96)
=||-=|+. | ..|+|+.. -|+|+|-|-|-- +--++..|.++.|..|+.
T Consensus 34 YVALWYkh-----G---~PI~GRAW---n~~G~V~asF~~~~~E~tg~~d~~GsIQlL~~~g 84 (368)
T 2bjr_A 34 YVALWYKN-----G---RPMHGRAW---NNGGVIECSFPYNKSELTGVKDLGGQIQVLQYKG 84 (368)
T ss_dssp EEEEEEET-----T---EEEEEEEE---EETTEEEEEEEETTEEECSHHHHCSEEEEEECCS
T ss_pred EEEEEecC-----C---ccceeeee---cCCCcEEEEEecCCceeccccccCCeEEEEEeCC
Confidence 35655776 4 39999877 589999999952 234457888999888753
No 27
>2xzm_Q Ribosomal protein S17 containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_Q
Probab=22.22 E-value=1e+02 Score=22.02 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=42.8
Q ss_pred CcCChhhhhh--hccceEEEEEecccCCCCceeEEEEEEEEceeCCCc-eEEEEeCC-----------------CCCc--
Q 042762 23 GVNTKEKVVW--YCCKHLAYIYKAKTKKSWTHYRCIWGKVARSHGNSG-VVRAEFKS-----------------NLPP-- 80 (96)
Q Consensus 23 gV~~~~~a~f--ylGKrvayvyk~k~~~~g~k~R~iwGkV~r~HGnsG-vVrAkF~~-----------------nLP~-- 80 (96)
|+.+++||-. |+-++|-| -..-...| |++-|.|+..-.+.= +|+..+.. ..|+
T Consensus 40 ~~k~P~~~~~~~~~D~kCPf--~G~lsvRg---r~l~G~VVS~KMdKTIvV~ve~~~~hpkY~K~vkr~kKy~AHDee~n 114 (157)
T 2xzm_Q 40 GFKTPKEAIEGTYVDKKCPF--TSNLSIRG---KIIKGLVISTKMNRTVIIRRDYLHYVRKYNRYEKRHRNIPVHISPCF 114 (157)
T ss_dssp SCCCCHHHHTCCCCCTTCSS--SSSCCCCS---CEEEEEEEECCSTTEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTS
T ss_pred CCcCChHHhcccccCCCCCC--ccceeeee---EEEEEEEEEecCCccEEEEEEEEEecCccceEeecceeEEEECCCCC
Confidence 7888877764 89999988 44333445 688999998866544 44444333 3433
Q ss_pred -cCCCCeEEEE
Q 042762 81 -KSMGDKVRVF 90 (96)
Q Consensus 81 -~aiG~~vrVm 90 (96)
--+|+.|+||
T Consensus 115 ~~kvGD~V~I~ 125 (157)
T 2xzm_Q 115 SVKEGDILVAG 125 (157)
T ss_dssp CCCTTCEEEEE
T ss_pred CCCCCCEEEEE
Confidence 5689999887
Done!