BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 042765
         (296 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct: 13  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 67

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F  +++ YFF+   +K   GSR +R     +G+  W+  G D +      ++G KK   +
Sbjct: 68  FG-EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKIISTEGQRVGIKKALVF 122

Query: 146 ----EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQ 186
                 KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q
Sbjct: 123 YIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 170


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
           T L LP GF+F P+DEEL+  YL +K +G    L    I + +LY+  P   W       
Sbjct: 16  TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDP---WVLPNKAL 70

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F  +++ YFF+   +K   GSR +R     +G+  W+  G D +      ++G KK   +
Sbjct: 71  FG-EKEWYFFSPRDRKYPNGSRPNR----VAGSGYWKATGTDKIISTEGQRVGIKKALVF 125

Query: 146 ----EKKGCEDYGPWIMHECTLHFP--KNQAT---NYVLCRLRKNQPTGQ 186
                 KG +    WIMHE  L  P  +N +T   ++VLCR+ K Q + Q
Sbjct: 126 YIGKAPKGTKTN--WIMHEYRLIEPSRRNGSTKLDDWVLCRIYKKQSSAQ 173


>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 20/169 (11%)

Query: 26  TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPF 85
            +L LP GF+F P+D+EL+EHYL +K +G  +P+    I + +LY+  P   WD      
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDP---WDLPERAL 65

Query: 86  FNIDEDLYFFTQLKKKSSKGSRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRY 145
           F   E  YFFT   +K   GSR +R  ++ +G W+   A K +      + I     F  
Sbjct: 66  FGARE-WYFFTPRDRKYPNGSRPNR--AAGNGYWKATGADKPVAPRGRTLGIKKALVFYA 122

Query: 146 EKKGCEDYGPWIMHECTLHFPKN----------QATNYVLCRL--RKNQ 182
            K        WIMHE  L               +  ++VLCRL  +KN+
Sbjct: 123 GKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,963,485
Number of Sequences: 62578
Number of extensions: 370732
Number of successful extensions: 759
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 5
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)