Query 042765
Match_columns 296
No_of_seqs 149 out of 960
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 16:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 8.3E-53 2.8E-57 367.7 14.0 148 26-183 11-170 (174)
2 1ut7_A No apical meristem prot 100.0 1.8E-52 6.3E-57 364.8 13.3 149 26-184 13-168 (171)
3 1ldd_A APC2WHB, anaphase promo 36.7 18 0.00063 26.6 2.2 44 15-59 17-65 (74)
4 4dox_A Coat protein; all helix 25.9 32 0.0011 30.5 2.3 36 18-53 143-178 (226)
5 1cmb_A Met APO-repressor; DNA- 22.1 84 0.0029 24.1 3.6 38 37-80 50-87 (104)
6 3nr5_A MAF1, repressor of RNA 17.2 47 0.0016 28.1 1.4 13 64-76 119-131 (164)
7 4ep8_B Urease subunit beta; al 16.4 34 0.0012 26.7 0.3 36 2-41 39-76 (101)
8 4efo_A Serine/threonine-protei 15.4 33 0.0011 26.3 -0.0 11 3-13 15-25 (94)
9 3h5d_A DHDPS, dihydrodipicolin 11.4 57 0.002 29.7 0.4 47 10-59 89-137 (311)
10 3di5_A DINB-like protein; stru 10.8 75 0.0026 25.2 0.8 28 268-295 130-157 (168)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=8.3e-53 Score=367.71 Aligned_cols=148 Identities=32% Similarity=0.597 Sum_probs=128.3
Q ss_pred CCCCCCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCC
Q 042765 26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKG 105 (296)
Q Consensus 26 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g 105 (296)
.++.|||||||+|||||||.|||++|+.|.++|.. +|.++|||++|||+||+.. ..++++|||||++++||++|
T Consensus 11 ~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~--~I~evDvy~~~Pw~Lp~~~----~~g~~ewYFFs~r~~ky~~g 84 (174)
T 3ulx_A 11 AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVP--IIAEVDLYKFDPWDLPERA----LFGAREWYFFTPRDRKYPNG 84 (174)
T ss_dssp STTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSS--CCEECCGGGSCGGGSGGGC----SSCSSEEEEEEECCC-----
T ss_pred cccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcC--eeeecccccCCchhhhhhh----ccCCceEEEEeccccccCCC
Confidence 46799999999999999999999999999999875 9999999999999999864 34678999999999999999
Q ss_pred CccceeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecCC--CCCCCCeEEEEEEeCCCCC----------CCCCe
Q 042765 106 SRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG--CEDYGPWIMHECTLHFPKN----------QATNY 173 (296)
Q Consensus 106 ~R~~R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g~--~~~kT~WvMhEY~l~~~~~----------~~~~~ 173 (296)
.|.+|+| ++||||++|++++|.. +|.+||+||+|+||.++ ++.||+|+||||+|..+.. ..++|
T Consensus 85 ~R~nR~t--~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~w 160 (174)
T 3ulx_A 85 SRPNRAA--GNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDW 160 (174)
T ss_dssp CCSCEEE--TTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSE
T ss_pred CCceeec--CCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCE
Confidence 9999999 9999999999999986 37999999999999865 4789999999999997621 35789
Q ss_pred EEEEEEEcCC
Q 042765 174 VLCRLRKNQP 183 (296)
Q Consensus 174 VLCkI~~k~~ 183 (296)
||||||+|..
T Consensus 161 VlCrvf~K~~ 170 (174)
T 3ulx_A 161 VLCRLYNKKN 170 (174)
T ss_dssp EEEEEEESCC
T ss_pred EEEEEEEcCC
Confidence 9999999863
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.8e-52 Score=364.80 Aligned_cols=149 Identities=34% Similarity=0.571 Sum_probs=125.6
Q ss_pred CCCCCCCcceECCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCccccccCCCCcccCCceEEEEecccccCCCC
Q 042765 26 TDLFLPHGFQFRPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDSHGGPFFNIDEDLYFFTQLKKKSSKG 105 (296)
Q Consensus 26 ~~~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~~~~~~~~~~~ewYFFs~r~~k~~~g 105 (296)
..+.|||||||+|||||||.|||++|+.|.+++.. +|+++|||++|||+||+.. ..++++|||||++++||++|
T Consensus 13 ~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~--~I~e~Diy~~~Pw~Lp~~~----~~g~~ewyFFs~r~~k~~~g 86 (171)
T 1ut7_A 13 TQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQ--LIAEIDLYKFDPWVLPNKA----LFGEKEWYFFSPRDRKYPNG 86 (171)
T ss_dssp CSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSC--CSEECCGGGSCGGGHHHHS----SSCSSEEEEEEECCC-----
T ss_pred cccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCC--eEeecccccCChhHhhchh----hcCCccEEEEeccccccCCC
Confidence 45789999999999999999999999999999864 9999999999999999874 35688999999999999999
Q ss_pred CccceeecCCCceeeecCCCceEEeCCCCeEEeeEEeEEeecCC--CCCCCCeEEEEEEeCCCC-----CCCCCeEEEEE
Q 042765 106 SRIDRKVSSSSGAWQWEDAGKDIVSGQSKVKIGSKKRFRYEKKG--CEDYGPWIMHECTLHFPK-----NQATNYVLCRL 178 (296)
Q Consensus 106 ~R~~R~t~~~~G~Wk~tG~~k~I~~~~~g~~iG~KktL~F~~g~--~~~kT~WvMhEY~l~~~~-----~~~~~~VLCkI 178 (296)
.|++|+| ++||||++|++++|... +.+||+||+|+||.++ ++.||+|+||||+|.... ...++||||||
T Consensus 87 ~R~~R~t--~~G~Wk~tG~~k~I~~~--~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCrv 162 (171)
T 1ut7_A 87 SRPNRVA--GSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCRI 162 (171)
T ss_dssp --CCEEE--TTEEEEEEEEEEEEEET--TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEEE
T ss_pred CcccccC--CCCEEeccCCCceEEec--CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEEE
Confidence 9999999 99999999999999974 6999999999999865 578999999999999762 24679999999
Q ss_pred EEcCCC
Q 042765 179 RKNQPT 184 (296)
Q Consensus 179 ~~k~~~ 184 (296)
|+|..+
T Consensus 163 ~~k~~~ 168 (171)
T 1ut7_A 163 YKKQSS 168 (171)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 999764
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=36.68 E-value=18 Score=26.62 Aligned_cols=44 Identities=16% Similarity=0.175 Sum_probs=31.2
Q ss_pred hhhccccccc----CCCCCCCCcceECC-ChHHHHHHHHHHhhcCCCCCc
Q 042765 15 LTIFFSNKCK----NTDLFLPHGFQFRP-SDEELIEHYLKKKVSGILIPL 59 (296)
Q Consensus 15 ~~~~~~~~~~----~~~~~LPpGfRF~P-TDeELI~~YL~~Ki~g~~lp~ 59 (296)
|+|+++=++. -+-+..|.|+.|.. |++||-. ||..|+..+.+.+
T Consensus 17 LtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~-fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 17 LTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEG-YLNTLADEGRLKY 65 (74)
T ss_dssp HHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHH-HHHHHHHTTSEEC
T ss_pred HhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHH-HHHHHHhCCeEEE
Confidence 4566555543 01134588999998 9999888 8999999887653
No 4
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=25.91 E-value=32 Score=30.55 Aligned_cols=36 Identities=28% Similarity=0.430 Sum_probs=23.5
Q ss_pred cccccccCCCCCCCCcceECCChHHHHHHHHHHhhc
Q 042765 18 FFSNKCKNTDLFLPHGFQFRPSDEELIEHYLKKKVS 53 (296)
Q Consensus 18 ~~~~~~~~~~~~LPpGfRF~PTDeELI~~YL~~Ki~ 53 (296)
||--.++...+.-+-|..+.||++|+|.+=..+++.
T Consensus 143 fFD~V~n~AAl~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 143 FFDGVENPAAMQPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp TGGGTTCTTSCCCTTCCSSCCCHHHHHHHHTC----
T ss_pred hhcccCCccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 455555544455555899999999999976655554
No 5
>1cmb_A Met APO-repressor; DNA-binding regulatory protein; 1.80A {Escherichia coli} SCOP: a.43.1.5 PDB: 1cma_A 1cmc_A* 1mjl_A* 1mj2_A 1mjk_A* 1mjm_A 1mjo_A* 1mjp_A 1mjq_A*
Probab=22.08 E-value=84 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.322 Sum_probs=30.0
Q ss_pred CCChHHHHHHHHHHhhcCCCCCccccccccccCCCCCCcccccc
Q 042765 37 RPSDEELIEHYLKKKVSGILIPLAEYFIRDCNLYETKPSEIWDS 80 (296)
Q Consensus 37 ~PTDeELI~~YL~~Ki~g~~lp~~~~~I~~vDVY~~~PwdLp~~ 80 (296)
|-|..||++.-...-..|+|+|.+ .|+-+..|.++|..
T Consensus 50 HATNSELLCEAFLHA~TGQPLP~D------~Dl~Kd~~d~iP~~ 87 (104)
T 1cmb_A 50 HATNSELLCEAFLHAFTGQPLPDD------ADLRKERSDEIPEA 87 (104)
T ss_dssp CCSHHHHHHHHHHHHHHCCCCCCG------GGGBTTSCSCSCHH
T ss_pred hcccHHHHHHHHHHHhcCCCCCCc------hhhhhcCCccchHH
Confidence 568889888766678889999975 57777888888764
No 6
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=17.15 E-value=47 Score=28.07 Aligned_cols=13 Identities=23% Similarity=0.861 Sum_probs=11.0
Q ss_pred cccccCCCCCCcc
Q 042765 64 IRDCNLYETKPSE 76 (296)
Q Consensus 64 I~~vDVY~~~Pwd 76 (296)
+.++|||++.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 5689999999974
No 7
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=16.44 E-value=34 Score=26.73 Aligned_cols=36 Identities=28% Similarity=0.504 Sum_probs=26.7
Q ss_pred cceeeeeeehhhhhhhcccccccCCCCCCCCc--ceECCChH
Q 042765 2 HQHIFSVNQHTIELTIFFSNKCKNTDLFLPHG--FQFRPSDE 41 (296)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPpG--fRF~PTDe 41 (296)
|-|.|-||-+- + |=+...-++-+..|.| +||-|-++
T Consensus 39 HyHF~E~N~aL-~---FDR~~A~G~RLdIpAGTavRFEPG~~ 76 (101)
T 4ep8_B 39 HYHFAEVNPAL-K---FDRQQAAGYRLNIPAGTAVRFEPGQK 76 (101)
T ss_dssp TSCGGGSCTTE-E---SCTTTTTTEEECSSTTCEEEECTTCE
T ss_pred ccChhHcCcce-e---ecHhhccCceecccCCCeEeeCCCCe
Confidence 88999999763 3 4445555677889998 89999764
No 8
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=15.40 E-value=33 Score=26.33 Aligned_cols=11 Identities=45% Similarity=0.667 Sum_probs=9.1
Q ss_pred ceeeeeeehhh
Q 042765 3 QHIFSVNQHTI 13 (296)
Q Consensus 3 ~~~~~~~~~~~ 13 (296)
.|||+|+|+++
T Consensus 15 vHVf~~~~a~~ 25 (94)
T 4efo_A 15 IHVFSLQQMTA 25 (94)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEEcccceE
Confidence 48999999875
No 9
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}
Probab=11.39 E-value=57 Score=29.68 Aligned_cols=47 Identities=19% Similarity=0.339 Sum_probs=27.7
Q ss_pred ehhhhhhhcccccccC-CC-CCCCCcceECCChHHHHHHHHHHhhcCCCCCc
Q 042765 10 QHTIELTIFFSNKCKN-TD-LFLPHGFQFRPSDEELIEHYLKKKVSGILIPL 59 (296)
Q Consensus 10 ~~~~~~~~~~~~~~~~-~~-~~LPpGfRF~PTDeELI~~YL~~Ki~g~~lp~ 59 (296)
..+||+....... +. .. +.+|| +.|.||+++|+.|| +.-...-++|.
T Consensus 89 ~~ai~la~~A~~~-Ga~davlv~~P-~y~~~s~~~l~~~f-~~va~a~~lPi 137 (311)
T 3h5d_A 89 RDSIEFVKEVAEF-GGFAAGLAIVP-YYNKPSQEGMYQHF-KAIADASDLPI 137 (311)
T ss_dssp HHHHHHHHHHHHS-CCCSEEEEECC-CSSCCCHHHHHHHH-HHHHHSCSSCE
T ss_pred HHHHHHHHHHHhc-CCCcEEEEcCC-CCCCCCHHHHHHHH-HHHHHhCCCCE
Confidence 3466776665553 22 22 45565 45889999999965 34433345554
No 10
>3di5_A DINB-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.01A {Bacillus cereus atcc 10987}
Probab=10.79 E-value=75 Score=25.17 Aligned_cols=28 Identities=29% Similarity=0.628 Sum_probs=20.1
Q ss_pred ccccchhhhhhhhhcCCCCcccCCCCCC
Q 042765 268 QMHKHQYQQILIQFGMSLPAIYGNDDES 295 (296)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (296)
.+|.-|+...+-|.+...|.+||-+.|.
T Consensus 130 ~hHrGQi~~~lr~~G~~~P~~yGps~~~ 157 (168)
T 3di5_A 130 NHHRGQMTVLMRQAGLTVPGVYGPAKEE 157 (168)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCC------
T ss_pred HHhHHHHHHHHHHcCCCCCcccCCCHHH
Confidence 4888888899999999999999987664
Done!