BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042768
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora
Length = 376
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/222 (28%), Positives = 96/222 (43%), Gaps = 20/222 (9%)
Query: 154 LSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVK 213
+ S N + + +NS FH+V + T+ P + NTDGI S N+
Sbjct: 154 IQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNIT 213
Query: 214 ITNCTIKTGDDCIPIG-----PGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQXXXXX 268
I I TGDD + I T+N+ I G GHG+SIGS GV
Sbjct: 214 IAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETM-----GVYNVTVD 268
Query: 269 XXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNY-CPHNLNCPGQVS 327
RIKS + + G V GVR+ + VM+NV PIVID Y N P
Sbjct: 269 DLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDW-- 325
Query: 328 GVKISDVIYQDIRGTSATPIAIKFDCSPKYPCQGIRLQNINL 369
SD+ ++D+ + + + + + K P + + ++N+ L
Sbjct: 326 ----SDITFKDVTSETKGVVVLNGE-NAKKPIE-VTMKNVKL 361
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|B Chain B, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|C Chain C, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|D Chain D, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|E Chain E, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|F Chain F, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
pdb|2IQ7|G Chain G, Crystal Structure Of The Polygalacturonase From
Colletotrichum Lupini And Its Implications For The
Interaction With Polygalacturonase- Inhibiting Proteins
Length = 339
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 85/310 (27%), Positives = 132/310 (42%), Gaps = 29/310 (9%)
Query: 90 DITFRIDGTLVAPADYRVLGQADNW----LSFEG----VSGVSIIGGALDAKGSSLWACK 141
D+T GT V G + W +SF G ++G S G ++D +GS W K
Sbjct: 35 DMTGLKSGTTVTFQGKTTFGYKE-WEGPLISFSGTNININGAS--GHSIDCQGSRWWDSK 91
Query: 142 AS--GTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVI-APGNS 198
S G P S +SN I GL LN+ + IN + V V + + G+S
Sbjct: 92 GSNGGKTKPKFFYAHSLKSSN---IKGLNVLNTPVQAFSINSATTLGVYDVIIDNSAGDS 148
Query: 199 P---NTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255
NTD V S V I+ +K DDC+ I GT N+ TC GHG+SIGS+
Sbjct: 149 AGGHNTDAFDVGSSTGVYISGANVKNQDDCLAINSGT-NITFTGGTCSGGHGLSIGSVG- 206
Query: 256 DLVEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNV-QFPIVIDQN 314
+ V+ RIK+ + G V GV + + N+ ++ IVI+Q+
Sbjct: 207 GRSDNTVKTVTISNSKIVNSDNGVRIKT-VSGATGSVSGVTYSGITLSNIAKYGIVIEQD 265
Query: 315 YCPHNLNCPGQ-VSGVKISDVIYQDIRGTSATPIAIKFDCSPKYPCQGIRLQNINLRHLK 373
Y N + G +GV I+ + I G+ A+ + C + +++ K
Sbjct: 266 Y--ENGSPTGTPTNGVPITGLTLSKITGSVASSGTNVYILCASGACSNWKWSGVSVTGGK 323
Query: 374 QEAQSSCNNV 383
+ + C+N+
Sbjct: 324 KSTK--CSNI 331
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus
Length = 422
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 143/356 (40%), Gaps = 39/356 (10%)
Query: 24 ASSYATTTTYNVLSFGAKGNGVTDXXXXXXXXXXXXXXXXXXXXLYVPKGRYLLGS-VAF 82
AS+ T T N+LS+GA + TD +Y+P G Y L + V
Sbjct: 12 ASTKGATKTCNILSYGAVADNSTDVGPAITSAWAACKSGGL---VYIPSGNYALNTWVTL 68
Query: 83 NGDCKSSDITFRIDGTLVAPADYRVLGQADNWLS------FEGVSGVSIIGGALDAKGSS 136
G S ++DG + YR + N ++ FE S S GA+ G
Sbjct: 69 TG---GSATAIQLDGII-----YRTGTASGNMIAVTDTTDFELFSSTS--KGAVQGFG-- 116
Query: 137 LWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPG 196
+ A GT GA L T+ + ++ ++ +++ FH ++ C D V + I G
Sbjct: 117 -YVYHAEGTY---GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNM-AIRGG 171
Query: 197 NSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256
N DGI V S N+ + + + D+C+ + N+ +E + C G ++GSL D
Sbjct: 172 NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD 230
Query: 257 LVEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYC 316
V IKS +G V V + + + + ID Y
Sbjct: 231 ---TDVTDIVYRNVYTWSSNQMYMIKS--NGGSGTVSNVLLENFIGHGNAYSLDID-GYW 284
Query: 317 PHNLNCPGQVSGVKISDVIYQDIRGTS---ATPIAIKFDCSPKYPCQGIRLQNINL 369
G GV+++++ ++ +GT AT I+ CS PC + L++I +
Sbjct: 285 SSMTAVAGD--GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAI 338
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A
Resolution
pdb|1KCC|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With A Galacturonate At 1.00 A Resolution.
pdb|1KCD|A Chain A, Endopolygalacturonase I From Stereum Purpureum Complexed
With Two Galacturonate At 1.15 A Resolution
Length = 335
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 66/138 (47%), Gaps = 9/138 (6%)
Query: 200 NTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVE 259
NTDG V + NV I NC +K DDCI I G N+ E C GHGISIGS+A
Sbjct: 151 NTDGFDVSAN-NVTIQNCIVKNQDDCIAINDG-NNIRFENNQCSGGHGISIGSIA---TG 205
Query: 260 EGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNV-QFPIVIDQNYCPH 318
+ V RIK+ ++ V GV + + + ++ ++I Q+Y P
Sbjct: 206 KHVSNVVIKGNTVTRSMYGVRIKAQRTATSASVSGVTYDANTISGIAKYGVLISQSY-PD 264
Query: 319 NLNCPGQVSGVKISDVIY 336
++ PG +G SDV +
Sbjct: 265 DVGNPG--TGAPFSDVNF 280
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus
Fusarium Moniliforme
Length = 349
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 83/319 (26%), Positives = 132/319 (41%), Gaps = 40/319 (12%)
Query: 68 LYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG 127
VP G+ L S N S +TF+ T AD N + G S ++I G
Sbjct: 26 FQVPTGKQLDLSSLQN----DSTVTFKGTTTFATTADNDF-----NPIVISG-SNITITG 75
Query: 128 GA---LDAKGSSLWACKASGTNC---PDGATTLSFTNSNNIRINGLLSLNSQMFHIVING 181
+ +D G + W K S +N PD + T N+ +I L N + I G
Sbjct: 76 ASGHVIDGNGQAYWDGKGSNSNSNQKPDHFIVVQKTTGNS-KITNLNIQNWPVHCFDITG 134
Query: 182 CKDVHVEGVTVI-APGNSPN-----------TDGIHVQLSMNVKITNCTIKTGDDCIPIG 229
+ + G+ + G+ PN TDG + S +V + N + DDC+ +
Sbjct: 135 SSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQDDCVAVT 194
Query: 230 PGTKNLWIERVTCGPGHGISIGSLA--KDLVEEGVQXXXXXXXXXXXXXXXXRIKSWARP 287
GT N+ + + C GHG+SIGS+ D V +GVQ RIKS +
Sbjct: 195 SGT-NIVVSNMYCSGGHGLSIGSVGGKSDNVVDGVQ---FLSSQVVNSQNGCRIKSNSGA 250
Query: 288 SNGFVQGVRFIDAVMRNVQ-FPIVIDQNYCPHNLNCPGQ-VSGVKISDVIYQDIRGTSAT 345
+ G + V + + + N+ + + + Q+Y N G+ +GVKIS++ + + GT A+
Sbjct: 251 T-GTINNVTYQNIALTNISTYGVDVQQDYL--NGGPTGKPTNGVKISNIKFIKVTGTVAS 307
Query: 346 PIAIKFDCSPKYPCQGIRL 364
F C G
Sbjct: 308 SAQDWFILCGDGSCSGFTF 326
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus
pdb|1IB4|A Chain A, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
pdb|1IB4|B Chain B, Crystal Structure Of Polygalacturonase From Aspergillus
Aculeatus At Ph4.5
Length = 339
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 105/235 (44%), Gaps = 21/235 (8%)
Query: 115 LSFEGVSGVSIIGGALDAKGSSLWACKAS--GTNCPDGATTLSFTNSNNIRINGLLSLNS 172
L+ G SG SI G GS W + G P S TNS I+GL +NS
Sbjct: 74 LTITGASGHSING-----DGSRWWDGEGGNGGKTKPKFFAAHSLTNS---VISGLKIVNS 125
Query: 173 QMFHIVINGCKDVHVEGVTVI-APGNS---PNTDGIHVQLSMNVKITNCTIKTGDDCIPI 228
+ + G + ++ +T+ + G+ NTD + S V I+ T+ DDC+ +
Sbjct: 126 PVQVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYNQDDCVAV 185
Query: 229 GPGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQXXXXXXXXXXXXXXXXRIKSWARPS 288
G +N++ C GHG+SIGS+ + V+ RIK+ +
Sbjct: 186 NSG-ENIYFSGGYCSGGHGLSIGSVGG-RSDNTVKNVTFVDSTIINSDNGVRIKT-NIDT 242
Query: 289 NGFVQGVRFIDAVMRNV-QFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGT 342
G V V + D + ++ ++ IV+ QNY + + P +GV I+D + ++ G+
Sbjct: 243 TGSVSDVTYKDITLTSIAKYGIVVQQNYGDTS-STP--TTGVPITDFVLDNVHGS 294
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|B Chain B, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|C Chain C, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|D Chain D, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|E Chain E, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
pdb|1NHC|F Chain F, Structural Insights Into The Processivity Of
Endopolygalacturonase I From Aspergillus Niger
Length = 336
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 21/226 (9%)
Query: 127 GGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIR---INGLLSLNSQMFHIVINGCK 183
G +D GS W K GTN G T F +++ G+ N+ + I +
Sbjct: 77 GAVIDGDGSRWWDSK--GTNG--GKTKPKFMYIHDVEDSTFKGINIKNTPVQAISVQ-AT 131
Query: 184 DVHVEGVTVI-APGNS---PNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIER 239
+VH+ T+ + G+ NTDG + S V I+ T+K DDCI I G +++
Sbjct: 132 NVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTG 190
Query: 240 VTCGPGHGISIGSL-AKDLVEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFI 298
TC GHG+SIGS+ +D + V+ RIK+ + + G V + +
Sbjct: 191 GTCSGGHGLSIGSVGGRD--DNTVKNVTISDSTVSNSANGVRIKTIYKET-GDVSEITYS 247
Query: 299 DAVMRNV-QFPIVIDQNYCPHNLNCPGQVS-GVKISDVIYQDIRGT 342
+ + + + IVI+Q+Y N + G S G+ I+DV + GT
Sbjct: 248 NIQLSGITDYGIVIEQDY--ENGSPTGTPSTGIPITDVTVDGVTGT 291
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger
pdb|1CZF|B Chain B, Endo-Polygalacturonase Ii From Aspergillus Niger
Length = 362
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 66/145 (45%), Gaps = 7/145 (4%)
Query: 200 NTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVE 259
NTD V S+ V I + DDC+ + G +N+W TC GHG+SIGS+ D
Sbjct: 178 NTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSG-ENIWFTGGTCIGGHGLSIGSVG-DRSN 235
Query: 260 EGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNV-QFPIVIDQNYCPH 318
V+ RIK+ + G V + + + VM + + +VI Q+Y
Sbjct: 236 NVVKNVTIEHSTVSNSENAVRIKT-ISGATGSVSEITYSNIVMSGISDYGVVIQQDY--E 292
Query: 319 NLNCPGQ-VSGVKISDVIYQDIRGT 342
+ G+ +GV I DV + + G+
Sbjct: 293 DGKPTGKPTNGVTIQDVKLESVTGS 317
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|B Chain B, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|C Chain C, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
pdb|3JUR|D Chain D, The Crystal Structure Of A Hyperthermoactive
Exopolygalacturonase From Thermotoga Maritima
Length = 448
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 78/346 (22%), Positives = 118/346 (34%), Gaps = 87/346 (25%)
Query: 34 NVLSFGAKGNGVTDXXXXXXXXXXXXXXXXXXXXLYVPKGRYLLGSVAFNGDCKSSDITF 93
N+L FGA+G+G TD L VP+G +L G + S+I
Sbjct: 29 NLLDFGARGDGRTDCSESFKRAIEELSKQGGGR-LIVPEGVFLTGPIHL-----KSNIEL 82
Query: 94 RIDGTL-VAPADYRVLGQADNWLSFEGVS--------------GVSIIG-GALDA----- 132
+ GT+ P R L FEG+ V+I G G LD
Sbjct: 83 HVKGTIKFIPDPERYLPVV--LTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNE 140
Query: 133 -----KGSSLWACKASGTNCPDGATTLS--------------------------FTNSNN 161
KG + K N + L F N
Sbjct: 141 HWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRN 200
Query: 162 IRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT 221
+ + G+ +NS M+ I ++V + + + + G PN DGI + + I C T
Sbjct: 201 VLVEGVKIINSPMWCIHPVLSENVIIRNIEISSTG--PNNDGIDPESCKYMLIEKCRFDT 258
Query: 222 GDDCIPIGPG-----------------TKNLWIERVTCGPGHGISIGSLAKDLVEEGVQX 264
GDD + I G NL I + + G G+ IGS GV+
Sbjct: 259 GDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHG---GLVIGSEMSG----GVRN 311
Query: 265 XXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNVQFPIV 310
R+K+ +R G+++ + FID V NV ++
Sbjct: 312 VVARNNVYMNVERALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVI 356
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVE|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase
pdb|2UVF|A Chain A, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
pdb|2UVF|B Chain B, Structure Of Yersinia Enterocolitica Family 28
Exopolygalacturonase In Complex With Digalaturonic Acid
Length = 608
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 101/261 (38%), Gaps = 46/261 (17%)
Query: 151 ATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPG------NSPNTDGI 204
++ ++ N+ + G ++ + FH ++N +E V+A G ++ N DGI
Sbjct: 331 SSLMTLRGVENVYLAGF-TVRNPAFHGIMN------LENHNVVANGLIHQTYDANNGDGI 383
Query: 205 HVQLSMNVKITNCTIKTGDDCIPIGPGT----------KNLWIERVTCGPGHGISI---- 250
S NV + N TGDDCI GT K W+ GHG +
Sbjct: 384 EFGNSQNVMVFNNFFDTGDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRMGHGAIVTGSH 443
Query: 251 -GSLAKDLVEEGVQXXXXXXXXXXXXXXXXRIKSWARPSNGFVQGVRFIDAVMRNVQFPI 309
G+ +D++ E R KS + G + V F + MR++ +
Sbjct: 444 TGAWIEDILAEN--------NVMYLTDIGLRAKSTSTIGGG-ARNVTFRNNAMRDLAKQV 494
Query: 310 -VIDQNYCPHNLN-------CPGQVSGVKISDVIYQDIRGTSATPIAIKFDCSPKYPCQG 361
V+ +Y N N P Q + +V + G + + I IK D + K +
Sbjct: 495 MVMTLDYADSNANIDYPPAKIPAQFYDFTLKNVTVDNSTGKNPS-IEIKGDTANKAWHRL 553
Query: 362 IRLQNINLRHLKQEAQSSCNN 382
+ + N+ L ++ A S +
Sbjct: 554 VHVNNVQLNNVTPTAISDLRD 574
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 125 IIGGALDAKGSSLWACKA-SGTNCPDGATTLS----FTNSNNIRINGLLSLNSQ----MF 175
I+GG+LDAKGS W K S N GAT ++ T + N+R+ ++
Sbjct: 103 IMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTL 162
Query: 176 HIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKI 214
+ + ++V +E V + P NS G+ ++L V +
Sbjct: 163 RLYVGKKQEVEIEKV-IFHPDNSTVDIGL-IKLKQKVPV 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,727,843
Number of Sequences: 62578
Number of extensions: 424994
Number of successful extensions: 875
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 13
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)