Query 042768
Match_columns 397
No_of_seqs 257 out of 1693
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 09:15:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042768.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042768hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02155 polygalacturonase 100.0 5.9E-81 1.3E-85 601.1 46.7 382 15-397 10-392 (394)
2 PLN02793 Probable polygalactur 100.0 9.4E-78 2E-82 587.8 48.9 365 31-397 51-423 (443)
3 PLN02218 polygalacturonase ADP 100.0 6.9E-77 1.5E-81 579.0 44.9 365 25-397 60-431 (431)
4 PLN02188 polygalacturonase/gly 100.0 1E-76 2.2E-81 574.2 41.6 365 29-397 33-404 (404)
5 PLN03003 Probable polygalactur 100.0 6.4E-76 1.4E-80 569.8 43.5 365 25-397 16-389 (456)
6 PLN03010 polygalacturonase 100.0 3.4E-75 7.3E-80 562.1 47.6 357 27-397 41-403 (409)
7 PF00295 Glyco_hydro_28: Glyco 100.0 1.3E-57 2.8E-62 435.1 32.4 321 60-386 1-323 (326)
8 COG5434 PGU1 Endopygalactoruna 100.0 4.6E-43 9.9E-48 344.8 27.8 272 29-312 79-405 (542)
9 TIGR03808 RR_plus_rpt_1 twin-a 99.9 9.7E-26 2.1E-30 215.4 24.6 243 31-304 36-337 (455)
10 PF12708 Pectate_lyase_3: Pect 99.9 7.7E-22 1.7E-26 179.3 20.0 213 32-279 1-224 (225)
11 PLN02793 Probable polygalactur 99.8 1.6E-18 3.4E-23 170.6 28.9 219 90-345 144-398 (443)
12 PLN02218 polygalacturonase ADP 99.8 4.7E-18 1E-22 166.5 28.8 197 152-373 148-384 (431)
13 PLN02188 polygalacturonase/gly 99.8 7.1E-18 1.5E-22 164.1 29.5 220 90-344 123-377 (404)
14 PLN03003 Probable polygalactur 99.8 1.5E-17 3.3E-22 162.5 28.8 197 152-373 105-333 (456)
15 PLN03010 polygalacturonase 99.8 1.8E-17 3.9E-22 160.9 29.0 204 152-380 131-358 (409)
16 PLN02155 polygalacturonase 99.8 2.1E-17 4.5E-22 160.2 28.1 198 113-345 146-367 (394)
17 PF00295 Glyco_hydro_28: Glyco 99.8 1.2E-17 2.6E-22 159.9 25.5 196 112-343 92-310 (326)
18 PF03718 Glyco_hydro_49: Glyco 99.8 4.9E-17 1.1E-21 157.2 28.6 273 65-371 232-553 (582)
19 TIGR03805 beta_helix_1 paralle 99.7 2.4E-15 5.1E-20 142.8 26.6 227 52-312 1-250 (314)
20 PRK10123 wcaM putative colanic 99.4 5.8E-12 1.2E-16 113.0 16.3 252 3-302 5-282 (464)
21 COG5434 PGU1 Endopygalactoruna 99.3 2.1E-11 4.6E-16 121.3 15.6 154 173-344 237-398 (542)
22 TIGR03805 beta_helix_1 paralle 99.3 2.9E-10 6.2E-15 108.2 22.5 163 120-305 31-203 (314)
23 PF12541 DUF3737: Protein of u 98.8 4.2E-08 9.1E-13 87.8 11.7 32 207-242 153-184 (277)
24 COG3866 PelB Pectate lyase [Ca 98.8 2.2E-07 4.8E-12 84.6 15.6 138 91-275 77-229 (345)
25 PF12541 DUF3737: Protein of u 98.8 1.1E-07 2.4E-12 85.1 13.5 94 156-275 94-187 (277)
26 TIGR03808 RR_plus_rpt_1 twin-a 98.8 3.3E-07 7.2E-12 88.8 16.9 146 153-312 108-291 (455)
27 PF13229 Beta_helix: Right han 98.7 1.7E-07 3.7E-12 79.6 11.5 140 153-312 2-145 (158)
28 COG3866 PelB Pectate lyase [Ca 98.7 1.3E-06 2.8E-11 79.6 16.6 159 153-340 94-277 (345)
29 PF03718 Glyco_hydro_49: Glyco 98.6 3.6E-06 7.9E-11 82.6 19.7 245 64-344 255-554 (582)
30 COG3420 NosD Nitrous oxidase a 98.6 1.8E-05 3.9E-10 73.3 22.0 156 63-244 32-192 (408)
31 PF14592 Chondroitinas_B: Chon 98.6 1.7E-05 3.6E-10 77.1 22.6 46 48-96 3-49 (425)
32 PF07602 DUF1565: Protein of u 98.6 6.9E-06 1.5E-10 74.6 18.5 42 48-97 14-60 (246)
33 PF13229 Beta_helix: Right han 98.5 8.6E-07 1.9E-11 75.3 10.8 139 116-283 4-146 (158)
34 PF05048 NosD: Periplasmic cop 98.5 7.7E-06 1.7E-10 74.9 17.3 134 115-281 16-151 (236)
35 smart00656 Amb_all Amb_all dom 98.5 5.5E-06 1.2E-10 73.1 15.2 100 175-275 32-144 (190)
36 PLN02176 putative pectinestera 98.4 0.00019 4.1E-09 68.4 24.3 46 48-97 50-97 (340)
37 PLN02480 Probable pectinestera 98.4 0.0001 2.2E-09 70.5 22.3 197 47-304 58-276 (343)
38 PF05048 NosD: Periplasmic cop 98.4 1.1E-05 2.3E-10 74.0 14.3 135 152-310 14-150 (236)
39 PLN02497 probable pectinestera 98.4 0.00015 3.3E-09 68.8 22.0 46 48-97 43-90 (331)
40 PLN02773 pectinesterase 98.3 0.00019 4.1E-09 67.9 22.0 46 48-97 16-63 (317)
41 PLN02665 pectinesterase family 98.3 0.00033 7.2E-09 67.4 23.5 201 48-304 79-297 (366)
42 smart00656 Amb_all Amb_all dom 98.2 7.4E-05 1.6E-09 65.9 16.0 119 153-281 33-173 (190)
43 PLN02634 probable pectinestera 98.2 0.001 2.3E-08 63.7 23.9 46 48-97 67-114 (359)
44 PLN02170 probable pectinestera 98.2 0.00077 1.7E-08 67.8 23.0 203 48-304 236-451 (529)
45 PF00544 Pec_lyase_C: Pectate 98.1 1E-05 2.2E-10 72.1 8.6 94 181-275 44-158 (200)
46 PLN02708 Probable pectinestera 98.1 0.002 4.3E-08 65.8 24.2 46 48-97 252-300 (553)
47 PLN02682 pectinesterase family 98.0 0.002 4.4E-08 62.0 22.8 47 47-97 80-128 (369)
48 PLN02713 Probable pectinestera 98.0 0.00083 1.8E-08 68.6 21.3 176 48-275 261-455 (566)
49 PLN02933 Probable pectinestera 98.0 0.0013 2.9E-08 66.2 22.3 146 48-243 229-384 (530)
50 PRK10531 acyl-CoA thioesterase 98.0 0.00091 2E-08 65.3 20.0 52 42-97 88-141 (422)
51 PLN02916 pectinesterase family 98.0 0.0017 3.8E-08 64.9 22.0 46 48-97 198-248 (502)
52 PLN02201 probable pectinestera 98.0 0.002 4.4E-08 65.0 22.6 146 48-243 217-372 (520)
53 PLN02484 probable pectinestera 98.0 0.0014 3.1E-08 67.3 21.8 147 48-243 283-439 (587)
54 PF01095 Pectinesterase: Pecti 98.0 0.00041 9E-09 65.5 16.1 47 47-97 10-58 (298)
55 PLN02301 pectinesterase/pectin 97.9 0.0021 4.5E-08 65.4 21.8 175 48-275 247-438 (548)
56 PLN03043 Probable pectinestera 97.9 0.0009 1.9E-08 68.0 18.9 176 48-275 234-428 (538)
57 PF12708 Pectate_lyase_3: Pect 97.9 0.00068 1.5E-08 61.1 16.5 123 162-309 94-224 (225)
58 PLN02990 Probable pectinestera 97.9 0.0026 5.7E-08 65.1 22.2 179 48-276 270-463 (572)
59 PLN02671 pectinesterase 97.9 0.0034 7.5E-08 60.3 21.1 47 48-97 70-117 (359)
60 PLN02432 putative pectinestera 97.9 0.0023 4.9E-08 60.0 19.1 46 48-97 22-69 (293)
61 PLN02506 putative pectinestera 97.9 0.003 6.6E-08 64.1 21.3 47 48-97 243-290 (537)
62 PLN02468 putative pectinestera 97.8 0.0031 6.8E-08 64.5 21.2 147 48-243 269-424 (565)
63 PLN02416 probable pectinestera 97.8 0.0015 3.2E-08 66.5 18.4 47 48-97 241-288 (541)
64 PLN02304 probable pectinestera 97.8 0.0046 9.9E-08 59.7 20.3 46 48-97 86-133 (379)
65 PLN02488 probable pectinestera 97.8 0.0034 7.4E-08 62.7 19.7 48 47-97 207-255 (509)
66 PLN02745 Putative pectinestera 97.7 0.0042 9.2E-08 63.9 20.3 203 48-304 296-520 (596)
67 PLN02217 probable pectinestera 97.7 0.0032 7E-08 65.2 19.2 207 48-305 261-486 (670)
68 PLN02995 Probable pectinestera 97.7 0.0029 6.2E-08 64.4 18.3 205 48-305 234-461 (539)
69 PLN02314 pectinesterase 97.7 0.0027 5.9E-08 65.3 18.3 205 48-305 289-509 (586)
70 PLN02313 Pectinesterase/pectin 97.7 0.0049 1.1E-07 63.4 19.8 146 48-243 286-441 (587)
71 PLN02197 pectinesterase 97.7 0.0032 7E-08 64.5 18.2 209 48-304 286-513 (588)
72 PF00544 Pec_lyase_C: Pectate 97.6 0.0015 3.3E-08 58.2 12.9 116 157-282 43-188 (200)
73 COG3420 NosD Nitrous oxidase a 97.3 0.0032 7E-08 58.8 11.4 114 115-244 123-236 (408)
74 PF12218 End_N_terminal: N ter 97.2 0.00048 1E-08 47.3 3.9 39 40-81 1-39 (67)
75 PF01696 Adeno_E1B_55K: Adenov 97.1 0.19 4.2E-06 48.6 21.7 51 34-101 45-98 (386)
76 COG4677 PemB Pectin methyleste 96.8 0.057 1.2E-06 50.4 14.5 48 47-97 92-141 (405)
77 PF03211 Pectate_lyase: Pectat 96.0 0.23 4.9E-06 44.3 13.4 56 184-245 62-118 (215)
78 PF01696 Adeno_E1B_55K: Adenov 96.0 1.1 2.3E-05 43.6 18.7 82 183-279 121-204 (386)
79 PF14592 Chondroitinas_B: Chon 95.7 0.61 1.3E-05 45.9 15.9 167 158-339 129-322 (425)
80 PLN02480 Probable pectinestera 94.8 1 2.2E-05 43.4 14.2 113 179-305 128-252 (343)
81 TIGR03804 para_beta_helix para 94.1 0.067 1.5E-06 34.8 3.3 38 203-241 1-38 (44)
82 PF03211 Pectate_lyase: Pectat 93.9 4.5 9.8E-05 36.1 16.8 137 153-299 56-194 (215)
83 TIGR03804 para_beta_helix para 93.9 0.086 1.9E-06 34.3 3.5 41 176-221 1-41 (44)
84 PLN02698 Probable pectinestera 93.4 1.7 3.7E-05 44.2 13.3 40 210-251 298-337 (497)
85 PF07602 DUF1565: Protein of u 93.3 2.6 5.7E-05 38.6 13.2 23 261-283 149-171 (246)
86 PRK10531 acyl-CoA thioesterase 92.7 4.8 0.0001 39.8 14.8 115 180-305 203-336 (422)
87 PLN02773 pectinesterase 91.7 9 0.0002 36.6 15.1 80 155-243 97-181 (317)
88 PF09251 PhageP22-tail: Salmon 89.2 17 0.00036 35.7 14.4 68 209-283 263-354 (549)
89 PRK10123 wcaM putative colanic 88.9 1.4 3.1E-05 40.6 6.8 77 204-283 262-357 (464)
90 PF08480 Disaggr_assoc: Disagg 87.5 6.4 0.00014 34.1 9.4 57 184-245 3-76 (198)
91 PF01095 Pectinesterase: Pecti 83.9 31 0.00067 32.7 13.3 79 156-243 83-166 (298)
92 PLN02671 pectinesterase 83.7 44 0.00095 32.5 14.3 133 154-304 148-294 (359)
93 PLN02217 probable pectinestera 83.6 32 0.0007 36.3 14.2 115 179-305 333-452 (670)
94 PLN02468 putative pectinestera 83.1 32 0.0007 35.7 14.0 117 178-306 340-461 (565)
95 PF08480 Disaggr_assoc: Disagg 82.8 10 0.00022 32.9 8.4 64 210-277 2-78 (198)
96 PLN02745 Putative pectinestera 81.7 51 0.0011 34.5 14.8 116 179-306 368-488 (596)
97 PLN02170 probable pectinestera 80.5 67 0.0015 33.0 14.9 118 177-306 307-428 (529)
98 PLN02665 pectinesterase family 80.1 59 0.0013 31.8 13.8 122 178-311 149-278 (366)
99 PLN02995 Probable pectinestera 79.9 57 0.0012 33.7 14.3 116 179-306 308-428 (539)
100 PLN02197 pectinesterase 79.8 47 0.001 34.6 13.7 116 178-306 359-481 (588)
101 PLN02304 probable pectinestera 79.5 65 0.0014 31.6 14.4 16 157-172 159-174 (379)
102 PLN02698 Probable pectinestera 79.3 74 0.0016 32.5 14.8 140 156-305 266-419 (497)
103 PLN02634 probable pectinestera 76.3 72 0.0016 31.1 13.1 132 156-304 145-290 (359)
104 PLN02506 putative pectinestera 76.1 75 0.0016 32.8 13.9 80 155-243 314-398 (537)
105 PLN02916 pectinesterase family 75.8 98 0.0021 31.6 14.7 81 154-243 271-356 (502)
106 PF09251 PhageP22-tail: Salmon 75.1 90 0.002 30.9 15.9 69 232-303 263-348 (549)
107 PLN02176 putative pectinestera 75.0 83 0.0018 30.4 13.3 77 158-243 120-207 (340)
108 PLN02416 probable pectinestera 74.9 85 0.0018 32.4 14.0 78 157-243 314-396 (541)
109 PLN02201 probable pectinestera 74.3 1.1E+02 0.0024 31.5 14.6 116 178-305 288-408 (520)
110 PLN02301 pectinesterase/pectin 74.0 91 0.002 32.3 13.9 116 178-305 318-438 (548)
111 PLN02314 pectinesterase 73.9 90 0.0019 32.6 14.0 117 178-306 360-481 (586)
112 PLN02713 Probable pectinestera 73.5 92 0.002 32.4 13.9 115 179-305 336-455 (566)
113 PLN02682 pectinesterase family 72.7 99 0.0021 30.2 14.0 81 154-243 157-247 (369)
114 PLN02708 Probable pectinestera 72.5 1.2E+02 0.0025 31.5 14.4 78 157-243 327-409 (553)
115 PLN02484 probable pectinestera 71.2 1.4E+02 0.003 31.3 14.5 116 178-305 355-475 (587)
116 PLN02933 Probable pectinestera 71.1 1.3E+02 0.0028 31.0 14.7 116 178-305 300-420 (530)
117 PLN02432 putative pectinestera 69.6 1E+02 0.0022 29.1 13.2 38 157-194 91-132 (293)
118 PLN02313 Pectinesterase/pectin 67.8 1.1E+02 0.0024 31.9 13.1 116 179-306 358-478 (587)
119 PLN03043 Probable pectinestera 67.6 1.2E+02 0.0025 31.5 13.0 116 178-305 308-428 (538)
120 PLN02488 probable pectinestera 65.1 1.7E+02 0.0036 30.0 14.6 78 157-243 281-363 (509)
121 COG4704 Uncharacterized protei 64.9 15 0.00033 30.0 4.8 31 46-80 59-94 (151)
122 PLN02497 probable pectinestera 63.7 1.4E+02 0.0031 28.7 12.4 167 180-373 112-293 (331)
123 PLN02990 Probable pectinestera 55.7 2.6E+02 0.0057 29.2 13.5 116 179-306 343-463 (572)
124 smart00710 PbH1 Parallel beta- 54.1 13 0.00029 19.9 2.2 19 264-282 3-22 (26)
125 smart00722 CASH Domain present 53.1 74 0.0016 25.5 7.5 68 157-227 73-144 (146)
126 COG4531 ZnuA ABC-type Zn2+ tra 43.1 31 0.00067 32.0 3.7 26 51-79 38-67 (318)
127 smart00722 CASH Domain present 39.4 1.8E+02 0.0038 23.2 7.7 12 160-171 45-56 (146)
128 PRK13884 conjugal transfer pep 34.8 48 0.001 28.8 3.6 11 1-11 1-11 (178)
129 PF10162 G8: G8 domain; Inter 33.9 1.5E+02 0.0032 24.0 6.1 54 64-131 11-65 (125)
130 COG4677 PemB Pectin methyleste 31.2 1E+02 0.0022 29.5 5.1 16 158-173 187-202 (405)
131 COG5510 Predicted small secret 28.0 1.4E+02 0.003 19.4 3.8 9 48-56 31-39 (44)
132 PRK13617 psbV cytochrome c-550 27.5 1.1E+02 0.0023 26.4 4.4 12 50-61 60-71 (170)
133 COG3043 NapB Nitrate reductase 25.8 58 0.0013 27.1 2.3 14 1-14 2-15 (155)
134 PF02373 JmjC: JmjC domain, hy 22.4 54 0.0012 25.4 1.6 16 62-77 85-100 (114)
135 PHA00672 hypothetical protein 21.6 1.4E+02 0.0031 24.2 3.7 28 66-99 50-77 (152)
136 PF08830 DUF1806: Protein of u 21.0 4.3E+02 0.0093 21.0 6.6 70 48-127 4-87 (114)
137 KOG1777 Putative Zn-finger pro 20.7 1.1E+02 0.0023 30.5 3.4 27 203-229 420-446 (625)
138 PF04956 TrbC: TrbC/VIRB2 fami 20.7 1.1E+02 0.0024 23.3 3.0 11 1-11 1-11 (99)
139 PRK02710 plastocyanin; Provisi 20.4 1.6E+02 0.0035 23.5 4.0 9 66-74 47-55 (119)
140 PF15240 Pro-rich: Proline-ric 20.4 75 0.0016 27.5 2.1 6 20-25 10-15 (179)
No 1
>PLN02155 polygalacturonase
Probab=100.00 E-value=5.9e-81 Score=601.10 Aligned_cols=382 Identities=54% Similarity=0.988 Sum_probs=348.5
Q ss_pred HHHHHHHHHhccccCceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEecceeecCCCCCcceEEE
Q 042768 15 ILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGSVAFNGDCKSSDITFR 94 (397)
Q Consensus 15 ~l~~~~~~~~~~~a~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~ 94 (397)
+|+.|+.+...+..+++++||+||||++||++|||+|||+||++||++++|++|+||+|+|+++++.|++|||| +++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpcks-nv~l~ 88 (394)
T PLN02155 10 LLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCKS-KITFQ 88 (394)
T ss_pred HHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCCC-CceEE
Confidence 33334444556667789999999999999999999999999987899999999999999999999999999999 99999
Q ss_pred EccEEEeeccccccCCCcceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc
Q 042768 95 IDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM 174 (397)
Q Consensus 95 ~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~ 174 (397)
++|+|+++.++..|.....|+.+.+.+|+.|.||+|||+|+.||...+.+.....+|+++.|.+|++++|++++++|+|.
T Consensus 89 l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~ 168 (394)
T PLN02155 89 VAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISGVKSMNSQV 168 (394)
T ss_pred EeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEECeEEEcCCC
Confidence 99999998888777655679999999999999999999999999865544455567899999999999999999999999
Q ss_pred eEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecc
Q 042768 175 FHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLA 254 (397)
Q Consensus 175 ~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~ 254 (397)
|++++..|++++|++++|.++.+++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++
T Consensus 169 w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g 248 (394)
T PLN02155 169 SHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLA 248 (394)
T ss_pred eEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEecccc
Confidence 99999999999999999999988999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeE
Q 042768 255 KDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDV 334 (397)
Q Consensus 255 ~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI 334 (397)
+++..++++||+|+||+|.++.+|++||+|.+.++|.|+||+|+|++|++++.||.|++.|++....|+...+.+.|+||
T Consensus 249 ~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~I 328 (394)
T PLN02155 249 KELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQV 328 (394)
T ss_pred ccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEE
Confidence 87667889999999999999999999999865468999999999999999999999999998755456555567899999
Q ss_pred EEEeEEEeecCCceEEEecCCCCceecEEEEeEEEEeCC-ccccceeecccccccceecCCCCC
Q 042768 335 IYQDIRGTSATPIAIKFDCSPKYPCQGIRLQNINLRHLK-QEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 335 ~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~-~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
+|+||+++.....++.+.|.++.||+||+|+||++..++ .+..+.|.||.+.+.|+++|++|+
T Consensus 329 t~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~ 392 (394)
T PLN02155 329 TYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCL 392 (394)
T ss_pred EEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCccccc
Confidence 999999998877799999999999999999999999886 445899999999999999999997
No 2
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=9.4e-78 Score=587.83 Aligned_cols=365 Identities=39% Similarity=0.742 Sum_probs=336.6
Q ss_pred eeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCc-EEEecceeecCCCCCcceEEEEccEEEeeccccccC
Q 042768 31 TTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKG-RYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLG 109 (397)
Q Consensus 31 ~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G-~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~ 109 (397)
+++||+||||+|||.+|||+|||+||++||++.+|++|+||+| +|+++++.|.++||| +++|+++|+|+++.++.+|+
T Consensus 51 ~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~~w~ 129 (443)
T PLN02793 51 RVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPDVWK 129 (443)
T ss_pred eEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChHHcc
Confidence 5899999999999999999999999988899989999999999 599999999888889 99999999999999998887
Q ss_pred CC--cceEEEEeeeceEEec-cEEecCCCccccccc---CCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEecee
Q 042768 110 QA--DNWLSFEGVSGVSIIG-GALDAKGSSLWACKA---SGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCK 183 (397)
Q Consensus 110 ~~--~~~i~~~~~~nv~I~G-G~idg~g~~~w~~~~---~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~ 183 (397)
.. ..|+.+.+.+|++|.| |+|||+|+.||+... ...++..||++|.|.+|+|++|++++++|+|.|++++..|+
T Consensus 130 ~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp~~~i~~~~~~ 209 (443)
T PLN02793 130 GLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCR 209 (443)
T ss_pred CCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCCCeEEEEEccC
Confidence 43 5799999999999999 999999999997421 11234568999999999999999999999999999999999
Q ss_pred cEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCcEE
Q 042768 184 DVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQ 263 (397)
Q Consensus 184 ~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~v~ 263 (397)
+++|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+||++|||++++...+.++
T Consensus 210 nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~~~~~~V~ 289 (443)
T PLN02793 210 RVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289 (443)
T ss_pred cEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCcCCCCcEE
Confidence 99999999999988899999999999999999999999999999999999999999999999999999998877778899
Q ss_pred EEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEee
Q 042768 264 NVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTS 343 (397)
Q Consensus 264 ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~ 343 (397)
||+|+||++.++.+|++||+|.+ ++|.|+||+|+|++|+++.+||.|++.|+.....|....+.+.|+||+|+||+++.
T Consensus 290 nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~ 368 (443)
T PLN02793 290 DITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTS 368 (443)
T ss_pred EEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEE
Confidence 99999999999999999999987 78999999999999999999999999997655556555677899999999999998
Q ss_pred cCCceEEEecCCCCceecEEEEeEEEEeCC-ccccceeecccccccceecCCCCC
Q 042768 344 ATPIAIKFDCSPKYPCQGIRLQNINLRHLK-QEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 344 ~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~-~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
....++.+.|.++.||+||+|+||+|...+ +...+.|.|+++...|.+.|++|+
T Consensus 369 ~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~ 423 (443)
T PLN02793 369 ATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCF 423 (443)
T ss_pred cccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCccc
Confidence 666689999999999999999999999875 555799999999999999999996
No 3
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=6.9e-77 Score=579.05 Aligned_cols=365 Identities=43% Similarity=0.773 Sum_probs=334.2
Q ss_pred ccccCceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCc-EEEecceeecCCCCCcceEEEEccEEEeec
Q 042768 25 SSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKG-RYLLGSVAFNGDCKSSDITFRIDGTLVAPA 103 (397)
Q Consensus 25 ~~~a~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G-~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~ 103 (397)
.+.+.++++||+||||+|||++|||+|||+||++||++.++++|+||+| +|+++++.|+++||+ +++|+++|+|++++
T Consensus 60 ~~~~~~~~~nv~dfGA~gDG~tddT~Af~~Ai~~aCs~~Ggg~v~vP~G~tyl~~~i~l~gp~ks-~~~l~l~g~L~~s~ 138 (431)
T PLN02218 60 ASLRTPTTVSVSDFGAKGDGKTDDTQAFVNAWKKACSSNGAVNLLVPKGNTYLLKSIQLTGPCKS-IRTVQIFGTLSASQ 138 (431)
T ss_pred cccCCCcEEEeeecccCCCCCcccHHHHHHHHHHhhhcCCCcEEEECCCCeEEEeeeEecCccCC-ceEEEEEEEEEeCC
Confidence 4445678999999999999999999999999988899989999999999 699999999999999 99999999999999
Q ss_pred cccccCCCcceEEEEeeeceEEec---cEEecCCCcccccccC---CCCCCCCceeEEEEccCCeEEEeeeEecCcceEE
Q 042768 104 DYRVLGQADNWLSFEGVSGVSIIG---GALDAKGSSLWACKAS---GTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHI 177 (397)
Q Consensus 104 ~~~~~~~~~~~i~~~~~~nv~I~G---G~idg~g~~~w~~~~~---~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i 177 (397)
+..+|+....|+.+.+.+||+|.| |+|||+|+.||..... ..++..||+++.|.+|+|++|++++++|+|+|++
T Consensus 139 d~~~y~~~~~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~w~i 218 (431)
T PLN02218 139 KRSDYKDISKWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQIQI 218 (431)
T ss_pred ChhhccccccCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCCEEE
Confidence 999997777899999999999999 9999999999975321 1234579999999999999999999999999999
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
++..|+|++|+|++|.++.+++|+||||+.+|+||+|+||+|.+|||||+++++++||+|+||+|..+||++|||++.+.
T Consensus 219 ~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~g~~~ 298 (431)
T PLN02218 219 SIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSLGDDN 298 (431)
T ss_pred EEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcCCCCC
Confidence 99999999999999999988999999999999999999999999999999999999999999999999999999998776
Q ss_pred CcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEE
Q 042768 258 VEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQ 337 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ 337 (397)
....++||+|+||++.++.+|++||+|++ ++|.|+||+|+|++|+++++||.|++.|++.. .|+...+.+.|+||+|+
T Consensus 299 ~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~nI~~~ 376 (431)
T PLN02218 299 SKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKNVVYR 376 (431)
T ss_pred CCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEEEEEE
Confidence 66789999999999999999999999988 88999999999999999999999999998643 35555677899999999
Q ss_pred eEEEeecCCceEEEecCCCCceecEEEEeEEEEeCCccccceeecccccccceecCCCCC
Q 042768 338 DIRGTSATPIAIKFDCSPKYPCQGIRLQNINLRHLKQEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 338 ni~~~~~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
||+++.+...++.+.|.++.||+||+|+||++.. ....|+||++...|.++| .|-
T Consensus 377 NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~----~~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 377 NISGTSASDVAITFNCSKNYPCQGIVLDNVNIKG----GKATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred eEEEEecCCcEEEEEECCCCCEeeEEEEeEEEEC----CeeeEEEeeEEEcccCCC-CCC
Confidence 9999987667899999999999999999999984 256899999999996555 883
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=1e-76 Score=574.17 Aligned_cols=365 Identities=42% Similarity=0.783 Sum_probs=329.5
Q ss_pred CceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeecccccc
Q 042768 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVL 108 (397)
Q Consensus 29 ~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~ 108 (397)
++.++||+||||+|||.+|||+|||+||++||++.+|++|+||+|+|+++++.|+++||+ ...|.+ +|++++++++|
T Consensus 33 ~~~~~nv~d~GA~gDg~tddT~Ai~~Ai~~aC~~~Ggg~V~vP~G~yl~g~i~lkgpc~~-~s~v~l--~L~~s~d~~~y 109 (404)
T PLN02188 33 STFLFDVRSFGARANGHTDDSKAFMAAWKAACASTGAVTLLIPPGTYYIGPVQFHGPCTN-VSSLTF--TLKAATDLSRY 109 (404)
T ss_pred CceEEehhhcCcCCCCCeeCHHHHHHHHHHHhccCCCeEEEECCCeEEEEeEEeCCCcCc-ceeEEE--EEEcCCCHHHC
Confidence 456899999999999999999999999988899989999999999999999999998865 434444 99999999999
Q ss_pred CCCcceEEEEeeeceEEec-cEEecCCCccccccc--CCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecE
Q 042768 109 GQADNWLSFEGVSGVSIIG-GALDAKGSSLWACKA--SGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDV 185 (397)
Q Consensus 109 ~~~~~~i~~~~~~nv~I~G-G~idg~g~~~w~~~~--~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v 185 (397)
+....|+.+..++||+|.| |+|||+|+.||+... ....+..||++|.|.+|+|++|++++++|+|+|++++..|+++
T Consensus 110 ~~~~~~i~~~~~~ni~I~G~G~IDG~G~~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~nSp~w~i~~~~~~~v 189 (404)
T PLN02188 110 GSGNDWIEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVNSKFFHIALVECRNF 189 (404)
T ss_pred CCccceEEEeceeeEEEEeeEEEeCCCcccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEcCCCeEEEEEccccE
Confidence 8766799998899999999 999999999997432 1134567899999999999999999999999999999999999
Q ss_pred EEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCcEEEE
Q 042768 186 HVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQNV 265 (397)
Q Consensus 186 ~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~v~ni 265 (397)
+|++++|.++.+++|+||||+++|+||+|+||+|.++||||+++++++||+|+|+.|..+||++|||.|++.+.++++||
T Consensus 190 ~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSlG~~~~~~~V~nV 269 (404)
T PLN02188 190 KGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGL 269 (404)
T ss_pred EEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCCCCCCcCCcEEEE
Confidence 99999999998899999999999999999999999999999999999999999999999999999999887777889999
Q ss_pred EEEeeEEECCcceEEEEeecCC-CCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCC-CCCcceEEEeEEEEeEEEee
Q 042768 266 TVFKTVFTGTTNGFRIKSWARP-SNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCP-GQVSGVKISDVIYQDIRGTS 343 (397)
Q Consensus 266 ~i~n~~~~~~~~gi~i~s~~~~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~-~~~~~~~i~nI~~~ni~~~~ 343 (397)
+|+||++.++.+|++||+|.+. ++|.++||+|+|++|+++..||.|++.|++... |. .....+.|+||+|+||+++.
T Consensus 270 ~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~-~~~~~~s~v~I~nIt~~nI~gt~ 348 (404)
T PLN02188 270 VVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYS-CESKYPSGVTLSDIYFKNIRGTS 348 (404)
T ss_pred EEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCC-CCcCCCCCcEEEeEEEEEEEEEe
Confidence 9999999999999999999753 468999999999999999999999999976432 32 23456899999999999998
Q ss_pred cCCceEEEecCCCCceecEEEEeEEEEeCC--ccccceeecccccccceecCCCCC
Q 042768 344 ATPIAIKFDCSPKYPCQGIRLQNINLRHLK--QEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 344 ~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~--~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
....++.+.|.++.||+||+|+||++..++ +...+.|+||++.+.|.++|++|+
T Consensus 349 ~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 349 SSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred cCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 766789999999999999999999999874 345799999999999999999996
No 5
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=6.4e-76 Score=569.83 Aligned_cols=365 Identities=41% Similarity=0.722 Sum_probs=329.8
Q ss_pred ccccCceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCc-EEEecceeecCCCCCcceEEEEccEEEeec
Q 042768 25 SSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKG-RYLLGSVAFNGDCKSSDITFRIDGTLVAPA 103 (397)
Q Consensus 25 ~~~a~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G-~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~ 103 (397)
-....++++||+||||+|||.+|||+|||+|+++||++.+|++|+||+| +|+++++.|+++||+..++++++|+++++.
T Consensus 16 ~~~~~~~~fnV~~yGA~gDG~tDdT~Af~~Aw~aaC~~~ggg~v~VP~G~~yl~~pl~l~gpck~~~~~~~i~G~i~ap~ 95 (456)
T PLN03003 16 QIFTSSNALDVTQFGAVGDGVTDDSQAFLKAWEAVCSGTGDGQFVVPAGMTFMLQPLKFQGSCKSTPVFVQMLGKLVAPS 95 (456)
T ss_pred eeeeeeeEEehhhcCCCCCCCcccHHHHHHHHHHhhhccCCCEEEECCCceEEeeeeEeCCCccCcceeeccCceEecCc
Confidence 4456678999999999999999999999999999899889999999999 589999999998877238888999998865
Q ss_pred cccccCC-CcceEEEEeeeceEEec-cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEec
Q 042768 104 DYRVLGQ-ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVING 181 (397)
Q Consensus 104 ~~~~~~~-~~~~i~~~~~~nv~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~ 181 (397)
. ..|.. ...||.+.+++|++|.| |+|||+|+.||... ..||+++.|.+|+|++|++++++|+|.|++++..
T Consensus 96 ~-~~w~~~~~~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~------~~rP~~l~f~~~~nv~I~gitl~NSp~w~i~i~~ 168 (456)
T PLN03003 96 K-GNWKGDKDQWILFTDIEGLVIEGDGEINGQGSSWWEHK------GSRPTALKFRSCNNLRLSGLTHLDSPMAHIHISE 168 (456)
T ss_pred c-ccccCCCcceEEEEcccceEEeccceEeCCchhhhhcc------cCCceEEEEEecCCcEEeCeEEecCCcEEEEEec
Confidence 4 34533 25799999999999999 99999999999742 3589999999999999999999999999999999
Q ss_pred eecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCc
Q 042768 182 CKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEG 261 (397)
Q Consensus 182 ~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~ 261 (397)
|++++|++++|.++.+++|+||||+.+|+||+|+||.|.++||||+++++++||+|+||+|..+|||+|||++++.....
T Consensus 169 c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSlg~~g~~~~ 248 (456)
T PLN03003 169 CNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSLGKDGETAT 248 (456)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeeccCCCCcce
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999988766678
Q ss_pred EEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCC--CCCCCCcceEEEeEEEEeE
Q 042768 262 VQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNL--NCPGQVSGVKISDVIYQDI 339 (397)
Q Consensus 262 v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~--~~~~~~~~~~i~nI~~~ni 339 (397)
++||+|+||++.++.+|++||+|.+ ++|.++||+|+|++|+++.+||.|++.|++... .|....+.+.|+||+|+||
T Consensus 249 V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI 327 (456)
T PLN03003 249 VENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNF 327 (456)
T ss_pred EEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeE
Confidence 9999999999999999999999988 789999999999999999999999999975322 1233446689999999999
Q ss_pred EEeecCCceEEEecCCCCceecEEEEeEEEEeCC----ccccceeecccccccceecCCCCC
Q 042768 340 RGTSATPIAIKFDCSPKYPCQGIRLQNINLRHLK----QEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 340 ~~~~~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~----~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
+++.....++.+.|+++.||+||+|+||+|...+ +...+.|.||++.+.++++|++||
T Consensus 328 ~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~ 389 (456)
T PLN03003 328 IGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECL 389 (456)
T ss_pred EEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCcc
Confidence 9988777799999999999999999999999763 246799999999999988888897
No 6
>PLN03010 polygalacturonase
Probab=100.00 E-value=3.4e-75 Score=562.08 Aligned_cols=357 Identities=39% Similarity=0.733 Sum_probs=329.2
Q ss_pred ccCceeEEeeccCccCCCccchHHHHHHHHHHHhhcCC-CcEEEEcCc-EEEecceeecCCCCCcceEEEEccEEEeecc
Q 042768 27 YATTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTE-SATLYVPKG-RYLLGSVAFNGDCKSSDITFRIDGTLVAPAD 104 (397)
Q Consensus 27 ~a~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~-g~~v~~p~G-~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~ 104 (397)
..+++++||+||||++||++|||+|||+|+++||+..+ +++|+||+| +|+++++.|++|||+++++|+++|+|+++.+
T Consensus 41 ~~~~~~~nV~dyGA~gDG~tddt~A~~~Ai~~ac~~~g~~g~v~vP~G~~yl~~~i~l~~pc~~~~v~l~l~G~l~~~~d 120 (409)
T PLN03010 41 LVNGQNYNVLKFGAKGDGQTDDSNAFLQAWNATCGGEGNINTLLIPSGKTYLLQPIEFKGPCKSTSIKVQLDGIIVAPSN 120 (409)
T ss_pred cCCCcEEeeeecCcCCCCCcccHHHHHHHHHHHccCCCCceEEEECCCCeEEEEeEEecCCCCCCcEEEEEccEEEccCC
Confidence 33668999999999999999999999999988876433 379999999 7999999999988743899999999999999
Q ss_pred ccccCC--CcceEEEEeeeceEEec-cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEec
Q 042768 105 YRVLGQ--ADNWLSFEGVSGVSIIG-GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVING 181 (397)
Q Consensus 105 ~~~~~~--~~~~i~~~~~~nv~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~ 181 (397)
+.+|+. ...|+.+.+++|++|.| |+|||+|+.||. ++.|.+|+|++|++++++|+|+|++++..
T Consensus 121 ~~~w~~~~~~~wi~f~~v~nv~I~G~G~IDG~G~~ww~-------------~l~~~~~~nv~v~gitl~nsp~~~i~i~~ 187 (409)
T PLN03010 121 IVAWSNPKSQMWISFSTVSGLMIDGSGTIDGRGSSFWE-------------ALHISKCDNLTINGITSIDSPKNHISIKT 187 (409)
T ss_pred hhhccCCCCcceEEEecccccEEeeceEEeCCCccccc-------------eEEEEeecCeEEeeeEEEcCCceEEEEec
Confidence 988864 35789999999999999 999999999995 58999999999999999999999999999
Q ss_pred eecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCc
Q 042768 182 CKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEG 261 (397)
Q Consensus 182 ~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~ 261 (397)
|++++|++++|.++..++|+||||+.+|++|+|+||+|.++||||++++++.++.|+++.|..+||++|||++.+.....
T Consensus 188 ~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~g~~~~~~~ 267 (409)
T PLN03010 188 CNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSLGADGANAK 267 (409)
T ss_pred cccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccCCCCCCCCe
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999987665667
Q ss_pred EEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEE
Q 042768 262 VQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRG 341 (397)
Q Consensus 262 v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~ 341 (397)
++||+|+||++.++.+|++||+|.+ ++|.|+||+|+||+|+++++||.|++.|+.....|....+.++|+||+|+||++
T Consensus 268 V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~G 346 (409)
T PLN03010 268 VSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRG 346 (409)
T ss_pred eEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEE
Confidence 9999999999999999999999987 789999999999999999999999999987555565567889999999999999
Q ss_pred eecCCceEEEecCCCCceecEEEEeEEEEeCC-ccccceeecccccccceecCCCCC
Q 042768 342 TSATPIAIKFDCSPKYPCQGIRLQNINLRHLK-QEAQSSCNNVIGKALGLVQPNSCL 397 (397)
Q Consensus 342 ~~~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~-~~~~~~c~n~~~~~~~~~~~~~~~ 397 (397)
+.....++.+.|++..||+||+|+||++..++ +++.+.|.||.+...|..+|++||
T Consensus 347 T~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~ 403 (409)
T PLN03010 347 TTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCF 403 (409)
T ss_pred EeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCccc
Confidence 98777899999999999999999999999876 557899999999999999999997
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=1.3e-57 Score=435.13 Aligned_cols=321 Identities=37% Similarity=0.677 Sum_probs=278.0
Q ss_pred hhcCCCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeeceEEec-cEEecCCCccc
Q 042768 60 CASTESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 138 (397)
Q Consensus 60 c~~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~w 138 (397)
|++.++++|+||+|+|+++++.|++++.+ ++++.++|++.++.....++. ..||.+.+++|++|.| |+|||+|+.||
T Consensus 1 C~~~~~~~v~vP~g~~~~~~~~l~~~l~~-~~~~~l~G~~~~~~~~~~~~~-~~~i~~~~~~ni~i~G~G~IDG~G~~w~ 78 (326)
T PF00295_consen 1 CSSIGGGTVVVPAGTYLLGPLFLKSTLHS-DVGLTLDGTINFSYDNWEGPN-SALIYAENAENITITGKGTIDGNGQAWW 78 (326)
T ss_dssp HSEEEEESEEESTSTEEEEETSEETECET-TCEEEEESEEEEG-EESTSE--SEEEEEESEEEEECTTSSEEE--GGGTC
T ss_pred CcCCcCCEEEECCCCeEEceeEEEcccCC-CeEEEEEEEEEeCCCcccCCc-cEEEEEEceEEEEecCCceEcCchhhhh
Confidence 77788899999999999999999865556 899999999988755555544 7889999999999999 99999999999
Q ss_pred ccccC-CCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEec
Q 042768 139 ACKAS-GTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNC 217 (397)
Q Consensus 139 ~~~~~-~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~ 217 (397)
+.... ......||+++.|.+|++++|+++++.++|.|++++..|++++|++++|.++...+|+|||++.+|+||+|+||
T Consensus 79 ~~~~~~~~~~~~rp~~i~~~~~~~~~i~~i~~~nsp~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~ 158 (326)
T PF00295_consen 79 DGSGDANNNGQRRPRLIRFNNCKNVTIEGITIRNSPFWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENC 158 (326)
T ss_dssp SSCTTHCCSSSSSSESEEEEEEEEEEEESEEEES-SSESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESE
T ss_pred ccccccccccccccceeeeeeecceEEEeeEecCCCeeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEe
Confidence 75432 13456799999999999999999999999999999999999999999999988789999999999999999999
Q ss_pred EEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEE
Q 042768 218 TIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRF 297 (397)
Q Consensus 218 ~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~ 297 (397)
.+.++||||+++++..||+|+||+|..+||++|||++.......++||+|+||++.++.+|++||++++ ++|.|+||+|
T Consensus 159 ~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f 237 (326)
T PF00295_consen 159 FIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITF 237 (326)
T ss_dssp EEESSSESEEESSEECEEEEESEEEESSSEEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEE
T ss_pred ecccccCcccccccccceEEEeEEEeccccceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEE
Confidence 999999999999988899999999999999999999765433469999999999999999999999987 8899999999
Q ss_pred EeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeecCCceEEEecCCCCceecEEEEeEEEEeCCcccc
Q 042768 298 IDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSATPIAIKFDCSPKYPCQGIRLQNINLRHLKQEAQ 377 (397)
Q Consensus 298 ~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~i~~i~~~nv~i~~~~~~~~ 377 (397)
+|++|+++.+||.|.+.|... ..+...+..++|+||+|+||+++.....++.+.|.+..||+||+|+||+|+. +...
T Consensus 238 ~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~--g~~~ 314 (326)
T PF00295_consen 238 ENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISNITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG--GKKP 314 (326)
T ss_dssp EEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES--SBSE
T ss_pred EEEEecCCceEEEEEeccccc-cccCcccCCceEEEEEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc--CCcC
Confidence 999999999999999998762 2233334567899999999999988767999999999999999999999997 3678
Q ss_pred ceeeccccc
Q 042768 378 SSCNNVIGK 386 (397)
Q Consensus 378 ~~c~n~~~~ 386 (397)
+.|+||+..
T Consensus 315 ~~c~nv~~~ 323 (326)
T PF00295_consen 315 AQCKNVPSG 323 (326)
T ss_dssp SEEBSCCTT
T ss_pred eEEECCCCC
Confidence 999999754
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=4.6e-43 Score=344.76 Aligned_cols=272 Identities=33% Similarity=0.504 Sum_probs=233.1
Q ss_pred CceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEecceeecCCCCCcceEEEEc-c-EEEeecccc
Q 042768 29 TTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGSVAFNGDCKSSDITFRID-G-TLVAPADYR 106 (397)
Q Consensus 29 ~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~-G-~l~~~~~~~ 106 (397)
....++|.+|||++||.+|+++|||+||+ +|++++|++|+||||+|+.++|+|| | +++|+++ | +|+.+.++.
T Consensus 79 ~~t~~sv~~~ga~gDG~t~~~~aiq~AI~-~ca~a~Gg~V~lPaGtylsg~l~LK----S-~~~L~l~egatl~~~~~p~ 152 (542)
T COG5434 79 TDTAFSVSDDGAVGDGATDNTAAIQAAID-ACASAGGGTVLLPAGTYLSGPLFLK----S-NVTLHLAEGATLLASSNPK 152 (542)
T ss_pred ccceeeeccccccccCCccCHHHHHHHHH-hhhhhcCceEEECCceeEeeeEEEe----c-ccEEEecCCceeeCCCChh
Confidence 34589999999999999999999999996 5788999999999999999999998 7 9999995 7 999999999
Q ss_pred ccCC--------C----------cceEEEE-------------eeeceE-Eec-cEEecCC----Cccccccc--CCCCC
Q 042768 107 VLGQ--------A----------DNWLSFE-------------GVSGVS-IIG-GALDAKG----SSLWACKA--SGTNC 147 (397)
Q Consensus 107 ~~~~--------~----------~~~i~~~-------------~~~nv~-I~G-G~idg~g----~~~w~~~~--~~~~~ 147 (397)
+|+. . ..++..+ ..+|.. |.| ++++|++ ..||.... .....
T Consensus 153 ~y~~~~~~~~~~~~~~~~a~~~~~~~~~~~g~~d~~~~~~~~~~~~n~~~i~g~~~i~g~~~~~g~~~~~~~g~~~~~i~ 232 (542)
T COG5434 153 DYPSFTSRFNGNSGPYVYATDSDNAMISGEGLADGKADLLIAGNSSNRKEIWGKGTIDGNGYKRGDKWFSGLGAVETRIG 232 (542)
T ss_pred hccccccccccccCcceeeecccCceeeeecccccCcccceeccCCceEEEeccceecCccccchhhhhhcccchhhccc
Confidence 9883 1 1122222 235555 777 8888864 22664332 11112
Q ss_pred C--CCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCee
Q 042768 148 P--DGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDC 225 (397)
Q Consensus 148 ~--~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~ 225 (397)
. .||.++.+..|.||++++++|.+++.|++|+..|+|++++|++|.+.... |+||+++.+|+||+|++|+|.++|||
T Consensus 233 ~~~~rp~~~~l~~c~NV~~~g~~i~ns~~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 233 GKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDC 311 (542)
T ss_pred ccCcCCceEEEeccceEEEeeeEecCCCcEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCce
Confidence 2 58999999999999999999999999999999999999999999997654 99999999999999999999999999
Q ss_pred EEeCCC-----------CeeEEEEeeEEeCCCe-EEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEE
Q 042768 226 IPIGPG-----------TKNLWIERVTCGPGHG-ISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQ 293 (397)
Q Consensus 226 i~i~~~-----------~~ni~i~n~~~~~~~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~ 293 (397)
|+++++ ++||.|+||+|..+|| +.+||| +.++++||+++||.|.++.+|++||+..+ ++|.++
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~ 386 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVR 386 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeEE
Confidence 999985 5899999999999997 888998 67899999999999999999999999988 889999
Q ss_pred cEEEEeeeeccCcccEEEE
Q 042768 294 GVRFIDAVMRNVQFPIVID 312 (397)
Q Consensus 294 nI~~~ni~~~~~~~~i~i~ 312 (397)
||+|+++++.++..+..|.
T Consensus 387 nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 387 NIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred EEEEecccccCcccceeee
Confidence 9999999999986554444
No 9
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=99.95 E-value=9.7e-26 Score=215.38 Aligned_cols=243 Identities=19% Similarity=0.248 Sum_probs=184.5
Q ss_pred eeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEecceeecCCCCCcceEEEEc-cEE--Eeeccccc
Q 042768 31 TTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGSVAFNGDCKSSDITFRID-GTL--VAPADYRV 107 (397)
Q Consensus 31 ~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~-G~l--~~~~~~~~ 107 (397)
+.+++++|||++||.+|+|+|||+||++| + .++++|.+|+|+|+.+++.|+ + +++|.++ |.. ....
T Consensus 36 r~~dv~~fGa~~dG~td~T~ALQaAIdaA-a-~gG~tV~Lp~G~Y~~G~L~L~----s-pltL~G~~gAt~~vIdG---- 104 (455)
T TIGR03808 36 LGRDATQYGVRPNSPDDQTRALQRAIDEA-A-RAQTPLALPPGVYRTGPLRLP----S-GAQLIGVRGATRLVFTG---- 104 (455)
T ss_pred cCCCHHHcCcCCCCcchHHHHHHHHHHHh-h-cCCCEEEECCCceecccEEEC----C-CcEEEecCCcEEEEEcC----
Confidence 46899999999999999999999999865 4 456899999999999999998 5 8999988 432 1111
Q ss_pred cCCCcceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEecee----
Q 042768 108 LGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCK---- 183 (397)
Q Consensus 108 ~~~~~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~---- 183 (397)
.+.++...++++|+|+|-+|++.|..| ..++.+|.+..|++++|++++|.++..|++.+..|+
T Consensus 105 ---~~~lIiai~A~nVTIsGLtIdGsG~dl----------~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~~~~~I~ 171 (455)
T TIGR03808 105 ---GPSLLSSEGADGIGLSGLTLDGGGIPL----------PQRRGLIHCQGGRDVRITDCEITGSGGNGIWLETVSGDIS 171 (455)
T ss_pred ---CceEEEEecCCCeEEEeeEEEeCCCcc----------cCCCCEEEEccCCceEEEeeEEEcCCcceEEEEcCcceEe
Confidence 134566667999999999999999754 246789999999999999999999999999999999
Q ss_pred ------------------cEEEEeEEEECCCC--------------------------------CCCCCcceeeceeeEE
Q 042768 184 ------------------DVHVEGVTVIAPGN--------------------------------SPNTDGIHVQLSMNVK 213 (397)
Q Consensus 184 ------------------~v~i~n~~i~~~~~--------------------------------~~~~DGi~~~~s~nv~ 213 (397)
++.|++.+|....+ ....+||+++++.+++
T Consensus 172 ~N~I~g~~~~~I~lw~S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~ 251 (455)
T TIGR03808 172 GNTITQIAVTAIVSFDALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVI 251 (455)
T ss_pred cceEeccccceEEEeccCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeE
Confidence 77777777776433 2346688888888888
Q ss_pred EEecEEecCC-eeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecC-CCCce
Q 042768 214 ITNCTIKTGD-DCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWAR-PSNGF 291 (397)
Q Consensus 214 I~n~~i~~~d-D~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~-~~~g~ 291 (397)
|++++|+..+ |+|.+.+ ++|++|++++|..-.=..+-++ ...+.-.|+|+++.+...|+.+..... .+-..
T Consensus 252 V~gN~I~~~r~dgI~~ns-ss~~~i~~N~~~~~R~~alhym------fs~~g~~i~~N~~~g~~~G~av~nf~~ggr~~~ 324 (455)
T TIGR03808 252 VRGNRIRNCDYSAVRGNS-ASNIQITGNSVSDVREVALYSE------FAFEGAVIANNTVDGAAVGVSVCNFNEGGRLAV 324 (455)
T ss_pred EECCEEeccccceEEEEc-ccCcEEECcEeeeeeeeEEEEE------EeCCCcEEeccEEecCcceEEEEeecCCceEEE
Confidence 8888888887 8888777 7788888888874321233222 112225678888888888888876642 12345
Q ss_pred EEcEEEEeeeecc
Q 042768 292 VQGVRFIDAVMRN 304 (397)
Q Consensus 292 v~nI~~~ni~~~~ 304 (397)
+..-.++|++-+.
T Consensus 325 ~~gn~irn~~~~~ 337 (455)
T TIGR03808 325 VQGNIIRNLIPKR 337 (455)
T ss_pred EecceeeccccCC
Confidence 6667777777654
No 10
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=99.89 E-value=7.7e-22 Score=179.35 Aligned_cols=213 Identities=29% Similarity=0.413 Sum_probs=118.5
Q ss_pred eEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEecc-eeecCCCCCcceEEEEcc---EEEe-ecccc
Q 042768 32 TYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGS-VAFNGDCKSSDITFRIDG---TLVA-PADYR 106 (397)
Q Consensus 32 ~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~-l~l~~~~~s~~v~l~~~G---~l~~-~~~~~ 106 (397)
.+||+||||+|||++|||+|||+||+++ +..++++||||||+|++.. +.++ + +++|+++| ++.. .....
T Consensus 1 ~inv~~fGa~~dG~tDdt~Aiq~Ai~~~-~~~~g~~v~~P~G~Y~i~~~l~~~----s-~v~l~G~g~~~~~~~~~~~~~ 74 (225)
T PF12708_consen 1 FINVTDFGAKGDGVTDDTAAIQAAIDAA-AAAGGGVVYFPPGTYRISGTLIIP----S-NVTLRGAGGNSTILFLSGSGD 74 (225)
T ss_dssp EEEGGGGT--TEEEEE-HHHHHHHHHHH-CSTTSEEEEE-SEEEEESS-EEE-----T-TEEEEESSTTTEEEEECTTTS
T ss_pred CcceeecCcCCCCChhHHHHHHHhhhhc-ccCCCeEEEEcCcEEEEeCCeEcC----C-CeEEEccCCCeeEEEecCccc
Confidence 3799999999999999999999999655 6788999999999999986 8887 5 89999986 3333 22222
Q ss_pred ccCCCcceEEEEe-eec--eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEecee
Q 042768 107 VLGQADNWLSFEG-VSG--VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCK 183 (397)
Q Consensus 107 ~~~~~~~~i~~~~-~~n--v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~ 183 (397)
.+........+.. ..+ +.|.+-++++..... ......+.+..+++++|+++++.+....++.+..+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~i~nl~i~~~~~~~----------~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~ 144 (225)
T PF12708_consen 75 SFSVVPGIGVFDSGNSNIGIQIRNLTIDGNGIDP----------NNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGT 144 (225)
T ss_dssp TSCCEEEEEECCSCSCCEEEEEEEEEEEETCGCE-----------SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCE
T ss_pred ccccccceeeeecCCCCceEEEEeeEEEcccccC----------CCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccc
Confidence 2221001111111 111 224444444443211 001345677777777777777777666666665444
Q ss_pred cEEEEeEEEECCCCCCCCCcceeec-eeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeC-C-CeEEEeeccccCCcC
Q 042768 184 DVHVEGVTVIAPGNSPNTDGIHVQL-SMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP-G-HGISIGSLAKDLVEE 260 (397)
Q Consensus 184 ~v~i~n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~-~gi~igs~~~~~~~~ 260 (397)
...+.+..... ++.+.. +.++.+.++.+..+++++..+ .+++.++||.+.. . .|+.+-..
T Consensus 145 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~i~n~~~~~~~~~gi~i~~~------- 207 (225)
T PF12708_consen 145 DYRIIGSTHVS--------GIFIDNGSNNVIVNNCIFNGGDNGIILG--NNNITISNNTFEGNCGNGINIEGG------- 207 (225)
T ss_dssp ECEEECCEEEE--------EEEEESCEEEEEEECEEEESSSCSEECE--EEEEEEECEEEESSSSESEEEEEC-------
T ss_pred cCcEeecccce--------eeeeccceeEEEECCccccCCCceeEee--cceEEEEeEEECCccceeEEEECC-------
Confidence 43333322221 223322 245555666666666663222 3566677776664 2 35655332
Q ss_pred cEEEEEEEeeEEECCcceE
Q 042768 261 GVQNVTVFKTVFTGTTNGF 279 (397)
Q Consensus 261 ~v~ni~i~n~~~~~~~~gi 279 (397)
.++.|+|++++++..|+
T Consensus 208 --~~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 208 --SNIIISNNTIENCDDGI 224 (225)
T ss_dssp --SEEEEEEEEEESSSEEE
T ss_pred --eEEEEEeEEEECCccCc
Confidence 13666666666665554
No 11
>PLN02793 Probable polygalacturonase
Probab=99.84 E-value=1.6e-18 Score=170.63 Aligned_cols=219 Identities=17% Similarity=0.216 Sum_probs=168.9
Q ss_pred ceEEEEccEEEeeccccccCC------------CcceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEE
Q 042768 90 DITFRIDGTLVAPADYRVLGQ------------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFT 157 (397)
Q Consensus 90 ~v~l~~~G~l~~~~~~~~~~~------------~~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~ 157 (397)
+++|.+.|+|.+... ..|.. ...++.+.+++|++|.|-++.... .+.+++.
T Consensus 144 ni~ItG~G~IDG~G~-~ww~~~~~~~~~~~~~~rP~~i~f~~~~nv~v~gitl~nSp----------------~~~i~~~ 206 (443)
T PLN02793 144 HLTVEGGGTVNGMGH-EWWAQSCKINHTNPCRHAPTAITFHKCKDLRVENLNVIDSQ----------------QMHIAFT 206 (443)
T ss_pred eEEEEeceEEECCCc-ccccccccccCCCCccCCceEEEEEeeccEEEECeEEEcCC----------------CeEEEEE
Confidence 788888888765332 11210 134688999999999994333111 2248899
Q ss_pred ccCCeEEEeeeEecCc----ceEEEEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCC--
Q 042768 158 NSNNIRINGLLSLNSQ----MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGP-- 230 (397)
Q Consensus 158 ~~~nv~I~~v~i~~~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~-- 230 (397)
+|+|++|+++++.++. ..+|++..|+||+|+|++|.+ ..|+|.+. +|+||+|+||.+..++ ||++++
T Consensus 207 ~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~-----gDDcIaik~~s~nI~I~n~~c~~Gh-GisIGSlg 280 (443)
T PLN02793 207 NCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRT-----GDDCISIVGNSSRIKIRNIACGPGH-GISIGSLG 280 (443)
T ss_pred ccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeC-----CCCeEEecCCcCCEEEEEeEEeCCc-cEEEeccc
Confidence 9999999999998743 358999999999999999998 45789886 6899999999998775 799987
Q ss_pred ------CCeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCC---------CCceEEc
Q 042768 231 ------GTKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARP---------SNGFVQG 294 (397)
Q Consensus 231 ------~~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~---------~~g~v~n 294 (397)
+.+||+|+||++.+. +|++|++... ..+.++||+|+|++|.+..++|.|...+.. ....++|
T Consensus 281 ~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g--~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~n 358 (443)
T PLN02793 281 KSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG--GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358 (443)
T ss_pred CcCCCCcEEEEEEEccEEeCCCceEEEEEeCC--CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEe
Confidence 268999999999976 6999998632 235799999999999999999999886531 1246899
Q ss_pred EEEEeeeeccC-cccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeecC
Q 042768 295 VRFIDAVMRNV-QFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSAT 345 (397)
Q Consensus 295 I~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~ 345 (397)
|+|+|++.... +.++.+... +..+++||+|+||+++...
T Consensus 359 I~~~nI~Gt~~~~~ai~l~cs------------~~~pc~ni~l~nI~l~~~~ 398 (443)
T PLN02793 359 ISFVHIKGTSATEEAIKFACS------------DSSPCEGLYLEDVQLLSST 398 (443)
T ss_pred EEEEEEEEEEcccccEEEEeC------------CCCCEeeEEEEeeEEEecC
Confidence 99999998764 346666632 2337999999999987553
No 12
>PLN02218 polygalacturonase ADPG
Probab=99.83 E-value=4.7e-18 Score=166.47 Aligned_cols=197 Identities=22% Similarity=0.284 Sum_probs=157.5
Q ss_pred eeEEEEccCCeEEEee---eEecC-------------------cceEEEEeceecEEEEeEEEECCCCCCCCCcceeece
Q 042768 152 TTLSFTNSNNIRINGL---LSLNS-------------------QMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLS 209 (397)
Q Consensus 152 ~~i~~~~~~nv~I~~v---~i~~~-------------------~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s 209 (397)
..|.+.+.+|++|++- +|... ....+.+..|+|++|+++++.+++. --+++..|
T Consensus 148 ~wi~~~~~~ni~I~G~~~GtIDG~G~~WW~~~~~~~~~~~~~~rP~~i~f~~~~nv~I~gitl~nSp~----w~i~~~~~ 223 (431)
T PLN02218 148 KWIMFDGVNNLSVDGGSTGVVDGNGETWWQNSCKRNKAKPCTKAPTALTFYNSKSLIVKNLRVRNAQQ----IQISIEKC 223 (431)
T ss_pred cCEEEecCcEEEEECCCCcEEeCCchhhhhcccccCCcCccCcCCEEEEEEccccEEEeCeEEEcCCC----EEEEEEce
Confidence 3588899999999882 33211 1235778899999999999999643 24888899
Q ss_pred eeEEEEecEEec-----CCeeEEeCCCCeeEEEEeeEEeCCC-eEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEe
Q 042768 210 MNVKITNCTIKT-----GDDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKS 283 (397)
Q Consensus 210 ~nv~I~n~~i~~-----~dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s 283 (397)
+||+|+|.++.+ .-|||.+.+ ++||+|+||++..++ .|+|++ +.+||+|+||++.. .+|+.|.|
T Consensus 224 ~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIaIks--------gs~nI~I~n~~c~~-GHGisIGS 293 (431)
T PLN02218 224 SNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCISIES--------GSQNVQINDITCGP-GHGISIGS 293 (431)
T ss_pred eeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEEecC--------CCceEEEEeEEEEC-CCCEEECc
Confidence 999999999986 358999988 899999999999986 599976 35799999999976 48999998
Q ss_pred ecCC-CCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeecCCceEEEecC--------
Q 042768 284 WARP-SNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSATPIAIKFDCS-------- 354 (397)
Q Consensus 284 ~~~~-~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~-------- 354 (397)
.... ..+.|+||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++..... |+.+...
T Consensus 294 ~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G----------g~G~v~nI~f~ni~m~~V~~-pI~Idq~Y~~~~~~~ 362 (431)
T PLN02218 294 LGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG----------GSGTASNIIFQNIQMENVKN-PIIIDQDYCDKSKCT 362 (431)
T ss_pred CCCCCCCceEEEEEEEccEEecCCcceEEeecCC----------CCeEEEEEEEEeEEEEcccc-cEEEEeeccCCCCCC
Confidence 6431 24689999999999999999999998643 34689999999999998764 6666521
Q ss_pred C---CCceecEEEEeEEEEeCC
Q 042768 355 P---KYPCQGIRLQNINLRHLK 373 (397)
Q Consensus 355 ~---~~~i~~i~~~nv~i~~~~ 373 (397)
. ...++||+|+||+.+...
T Consensus 363 ~~~s~v~I~nI~~~NI~gtsa~ 384 (431)
T PLN02218 363 SQQSAVQVKNVVYRNISGTSAS 384 (431)
T ss_pred CCCCCeEEEEEEEEeEEEEecC
Confidence 0 124899999999988654
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.83 E-value=7.1e-18 Score=164.13 Aligned_cols=220 Identities=19% Similarity=0.190 Sum_probs=168.5
Q ss_pred ceEEEEccEEEeeccccccCC-----------CcceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEc
Q 042768 90 DITFRIDGTLVAPADYRVLGQ-----------ADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTN 158 (397)
Q Consensus 90 ~v~l~~~G~l~~~~~~~~~~~-----------~~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~ 158 (397)
+++|.+.|+|.+... ..|.. ...++.+.+++|+.|.|-++.. .+. +.+++.+
T Consensus 123 ni~I~G~G~IDG~G~-~ww~~~~~~~~~~~~~rP~~i~f~~~~nv~i~gitl~n--Sp~--------------w~i~~~~ 185 (404)
T PLN02188 123 GLTLTGGGTFDGQGA-AAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN--SKF--------------FHIALVE 185 (404)
T ss_pred eEEEEeeEEEeCCCc-ccccccccccCCCCCcCceEEEEEeeeeEEEeCeEEEc--CCC--------------eEEEEEc
Confidence 788888888876442 22210 1346888899999999944432 222 2599999
Q ss_pred cCCeEEEeeeEecCc----ceEEEEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCC---
Q 042768 159 SNNIRINGLLSLNSQ----MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGP--- 230 (397)
Q Consensus 159 ~~nv~I~~v~i~~~~----~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~--- 230 (397)
|+|++|+++++.++. ..++++..|++|+|+|++|.+ ..|+|.+. +++||+|+||....+ .+|++++
T Consensus 186 ~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~-----GDDcIaiksg~~nI~I~n~~c~~g-hGisiGSlG~ 259 (404)
T PLN02188 186 CRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGT-----GDDCISIGQGNSQVTITRIRCGPG-HGISVGSLGR 259 (404)
T ss_pred cccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeC-----CCcEEEEccCCccEEEEEEEEcCC-CcEEeCCCCC
Confidence 999999999998643 358999999999999999998 45789886 567999999999766 4799977
Q ss_pred -----CCeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCC---------CCceEEcE
Q 042768 231 -----GTKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARP---------SNGFVQGV 295 (397)
Q Consensus 231 -----~~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~---------~~g~v~nI 295 (397)
+.+||+|+||++.+. +|++|++.......+.++||+|+|++|.+...+|.|...+.. ....++||
T Consensus 260 ~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~nI 339 (404)
T PLN02188 260 YPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDI 339 (404)
T ss_pred CCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEEeE
Confidence 269999999999986 699998863322345799999999999999999998864321 23679999
Q ss_pred EEEeeeeccC-cccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeec
Q 042768 296 RFIDAVMRNV-QFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSA 344 (397)
Q Consensus 296 ~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~ 344 (397)
+|+|++.+.. ..++.+... +..+++||+|+||+++..
T Consensus 340 t~~nI~gt~~~~~a~~l~cs------------~~~pc~ni~~~nV~i~~~ 377 (404)
T PLN02188 340 YFKNIRGTSSSQVAVLLKCS------------RGVPCQGVYLQDVHLDLS 377 (404)
T ss_pred EEEEEEEEecCceEEEEEEC------------CCCCEeeEEEEeeEEEec
Confidence 9999998765 335555532 234789999999998755
No 14
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.82 E-value=1.5e-17 Score=162.48 Aligned_cols=197 Identities=18% Similarity=0.208 Sum_probs=158.9
Q ss_pred eeEEEEccCCeEEEeeeEecCc-----------ceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEe
Q 042768 152 TTLSFTNSNNIRINGLLSLNSQ-----------MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIK 220 (397)
Q Consensus 152 ~~i~~~~~~nv~I~~v~i~~~~-----------~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~ 220 (397)
..|.+.+++++.|.|--..+.. ...+.+..|+|++|+++++.+++. --+++..|++|+|++.++.
T Consensus 105 ~wI~f~~~~~i~I~G~GtIDGqG~~wW~~~~~rP~~l~f~~~~nv~I~gitl~NSp~----w~i~i~~c~nV~i~~l~I~ 180 (456)
T PLN03003 105 QWILFTDIEGLVIEGDGEINGQGSSWWEHKGSRPTALKFRSCNNLRLSGLTHLDSPM----AHIHISECNYVTISSLRIN 180 (456)
T ss_pred ceEEEEcccceEEeccceEeCCchhhhhcccCCceEEEEEecCCcEEeCeEEecCCc----EEEEEeccccEEEEEEEEe
Confidence 4699999999999995444432 125788999999999999999643 2478889999999999998
Q ss_pred c-----CCeeEEeCCCCeeEEEEeeEEeCCC-eEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCC-CCceEE
Q 042768 221 T-----GDDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARP-SNGFVQ 293 (397)
Q Consensus 221 ~-----~dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~-~~g~v~ 293 (397)
+ .-|||.+.+ ++||+|+||.+..++ .|+|++ +.+||+|+|+++... +|+.|.|.... ..+.|+
T Consensus 181 ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIaiks--------gs~NI~I~n~~c~~G-HGISIGSlg~~g~~~~V~ 250 (456)
T PLN03003 181 APESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIAINS--------GTSNIHISGIDCGPG-HGISIGSLGKDGETATVE 250 (456)
T ss_pred CCCCCCCCCcEeecC-cceEEEEecEEecCCCeEEeCC--------CCccEEEEeeEEECC-CCeEEeeccCCCCcceEE
Confidence 7 248999988 899999999999986 599976 347999999999865 89999987431 135799
Q ss_pred cEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeecCCceEEEecCC--------------CCce
Q 042768 294 GVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSATPIAIKFDCSP--------------KYPC 359 (397)
Q Consensus 294 nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~--------------~~~i 359 (397)
||+|+|+++.+..++++|+.+.+ +.+.++||+|+||++..... |+.++... ...+
T Consensus 251 NV~v~n~~~~~T~nGvRIKT~~G----------g~G~v~nItf~nI~m~nV~~-pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 251 NVCVQNCNFRGTMNGARIKTWQG----------GSGYARMITFNGITLDNVEN-PIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred EEEEEeeEEECCCcEEEEEEeCC----------CCeEEEEEEEEeEEecCccc-eEEEEcccCCCCCCCcccCCCCCcEE
Confidence 99999999999999999998743 23589999999999998764 77664211 1368
Q ss_pred ecEEEEeEEEEeCC
Q 042768 360 QGIRLQNINLRHLK 373 (397)
Q Consensus 360 ~~i~~~nv~i~~~~ 373 (397)
+||+|+||+-+...
T Consensus 320 snI~f~NI~GTs~~ 333 (456)
T PLN03003 320 SKVVFSNFIGTSKS 333 (456)
T ss_pred EeEEEEeEEEEeCc
Confidence 99999999987554
No 15
>PLN03010 polygalacturonase
Probab=99.82 E-value=1.8e-17 Score=160.94 Aligned_cols=204 Identities=17% Similarity=0.230 Sum_probs=160.3
Q ss_pred eeEEEEccCCeEEEeeeEecCc---ce-EEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec-----C
Q 042768 152 TTLSFTNSNNIRINGLLSLNSQ---MF-HIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT-----G 222 (397)
Q Consensus 152 ~~i~~~~~~nv~I~~v~i~~~~---~~-~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-----~ 222 (397)
..+.+.+.+|+.|.|--..+.. .| .+.+..|+|++|+++++.+++. --+++..|++|+|+|.++.+ .
T Consensus 131 ~wi~f~~v~nv~I~G~G~IDG~G~~ww~~l~~~~~~nv~v~gitl~nsp~----~~i~i~~~~nv~i~~i~I~a~~~s~N 206 (409)
T PLN03010 131 MWISFSTVSGLMIDGSGTIDGRGSSFWEALHISKCDNLTINGITSIDSPK----NHISIKTCNYVAISKINILAPETSPN 206 (409)
T ss_pred ceEEEecccccEEeeceEEeCCCccccceEEEEeecCeEEeeeEEEcCCc----eEEEEeccccEEEEEEEEeCCCCCCC
Confidence 4588999999999996665542 34 5888999999999999999643 24788899999999999986 3
Q ss_pred CeeEEeCCCCeeEEEEeeEEeCCC-eEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCC-CCceEEcEEEEee
Q 042768 223 DDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARP-SNGFVQGVRFIDA 300 (397)
Q Consensus 223 dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~-~~g~v~nI~~~ni 300 (397)
-|||.+.+ ++||+|+||++..++ .|+|++. ..++.|+++.+.. .+|+.|.|.... ....|+||+|+|+
T Consensus 207 TDGiDi~~-s~nV~I~n~~I~~gDDcIaiksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~ 276 (409)
T PLN03010 207 TDGIDISY-STNINIFDSTIQTGDDCIAINSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHC 276 (409)
T ss_pred CCceeeec-cceEEEEeeEEecCCCeEEecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEee
Confidence 58999987 899999999999986 5999773 2467888888865 489999987431 2246999999999
Q ss_pred eeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEEeecCCceEEEecC---C---------CCceecEEEEeEE
Q 042768 301 VMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRGTSATPIAIKFDCS---P---------KYPCQGIRLQNIN 368 (397)
Q Consensus 301 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~---~---------~~~i~~i~~~nv~ 368 (397)
++.+..++++|+.+.+ +.+.++||+|+||++.... .|+.+... . ...++||+|+||+
T Consensus 277 ~i~~t~~GirIKt~~G----------~~G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~ 345 (409)
T PLN03010 277 TFNQTTNGARIKTWQG----------GQGYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFR 345 (409)
T ss_pred EEeCCCcceEEEEecC----------CCEEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeE
Confidence 9999999999998753 3458999999999999875 46776421 1 1258999999999
Q ss_pred EEeCC-cccccee
Q 042768 369 LRHLK-QEAQSSC 380 (397)
Q Consensus 369 i~~~~-~~~~~~c 380 (397)
-+..+ ....+.|
T Consensus 346 GT~~~~~~i~l~C 358 (409)
T PLN03010 346 GTTSNENAITLKC 358 (409)
T ss_pred EEeCCCccEEEEe
Confidence 87655 3334554
No 16
>PLN02155 polygalacturonase
Probab=99.81 E-value=2.1e-17 Score=160.19 Aligned_cols=198 Identities=19% Similarity=0.177 Sum_probs=155.7
Q ss_pred ceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCc----ceEEEEeceecEEEE
Q 042768 113 NWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQ----MFHIVINGCKDVHVE 188 (397)
Q Consensus 113 ~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~----~~~i~~~~~~~v~i~ 188 (397)
.++.+.+++|++|.|-++.- .+ .+.+++.+|+|++|+++++.++. ..++++..|+||+|+
T Consensus 146 ~~i~~~~~~nv~i~gitl~n--Sp--------------~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~ 209 (394)
T PLN02155 146 RSISFNSAKDVIISGVKSMN--SQ--------------VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFT 209 (394)
T ss_pred cceeEEEeeeEEEECeEEEc--CC--------------CeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEE
Confidence 46888999999999944431 12 23599999999999999998743 258999999999999
Q ss_pred eEEEECCCCCCCCCcceeec-eeeEEEEecEEecCCeeEEeCCC--------CeeEEEEeeEEeCC-CeEEEeeccccCC
Q 042768 189 GVTVIAPGNSPNTDGIHVQL-SMNVKITNCTIKTGDDCIPIGPG--------TKNLWIERVTCGPG-HGISIGSLAKDLV 258 (397)
Q Consensus 189 n~~i~~~~~~~~~DGi~~~~-s~nv~I~n~~i~~~dD~i~i~~~--------~~ni~i~n~~~~~~-~gi~igs~~~~~~ 258 (397)
|++|.+ ..|+|.+.+ |+||+|+||.+..++ +|++++- .+||+|+||++.+. +|++|++... ..
T Consensus 210 ~~~I~~-----gDDcIaik~gs~nI~I~n~~c~~Gh-GisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~-~~ 282 (394)
T PLN02155 210 GSTVQT-----GDDCVAIGPGTRNFLITKLACGPGH-GVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR-PS 282 (394)
T ss_pred eeEEec-----CCceEEcCCCCceEEEEEEEEECCc-eEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC-CC
Confidence 999998 457888874 689999999998764 7999882 48999999999976 6999998421 12
Q ss_pred cCcEEEEEEEeeEEECCcceEEEEeecCC---------CCceEEcEEEEeeeeccC-cccEEEEeecCCCCCCCCCCCcc
Q 042768 259 EEGVQNVTVFKTVFTGTTNGFRIKSWARP---------SNGFVQGVRFIDAVMRNV-QFPIVIDQNYCPHNLNCPGQVSG 328 (397)
Q Consensus 259 ~~~v~ni~i~n~~~~~~~~gi~i~s~~~~---------~~g~v~nI~~~ni~~~~~-~~~i~i~~~~~~~~~~~~~~~~~ 328 (397)
.+.++||+|+|++|.+...+|.|...+.. ....++||+|+|++.... ..++.+... +.
T Consensus 283 gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~~~a~~l~c~------------~~ 350 (394)
T PLN02155 283 TGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSATQEAMKLVCS------------KS 350 (394)
T ss_pred CEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecCCceEEEEeC------------CC
Confidence 46799999999999999999999765421 123689999999998765 345555532 23
Q ss_pred eEEEeEEEEeEEEeecC
Q 042768 329 VKISDVIYQDIRGTSAT 345 (397)
Q Consensus 329 ~~i~nI~~~ni~~~~~~ 345 (397)
.+.+||+|+||+++...
T Consensus 351 ~pc~~I~l~nv~i~~~~ 367 (394)
T PLN02155 351 SPCTGITLQDIKLTYNK 367 (394)
T ss_pred CCEEEEEEEeeEEEecC
Confidence 36899999999988653
No 17
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.81 E-value=1.2e-17 Score=159.87 Aligned_cols=196 Identities=22% Similarity=0.314 Sum_probs=156.4
Q ss_pred cceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEeceecEEE
Q 042768 112 DNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVINGCKDVHV 187 (397)
Q Consensus 112 ~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~~~~~v~i 187 (397)
..++.+.+++|++|+|-++.. .+.| .+++.+|+|++|+++++.++.. .++++..|++++|
T Consensus 92 p~~i~~~~~~~~~i~~i~~~n--sp~w--------------~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I 155 (326)
T PF00295_consen 92 PRLIRFNNCKNVTIEGITIRN--SPFW--------------HIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTI 155 (326)
T ss_dssp SESEEEEEEEEEEEESEEEES---SSE--------------SEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEE
T ss_pred cceeeeeeecceEEEeeEecC--CCee--------------EEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEE
Confidence 356889999999999944431 1122 4899999999999999987653 4899999999999
Q ss_pred EeEEEECCCCCCCCCcceeecee-eEEEEecEEecCCeeEEeCC---C-----CeeEEEEeeEEeCC-CeEEEeeccccC
Q 042768 188 EGVTVIAPGNSPNTDGIHVQLSM-NVKITNCTIKTGDDCIPIGP---G-----TKNLWIERVTCGPG-HGISIGSLAKDL 257 (397)
Q Consensus 188 ~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~---~-----~~ni~i~n~~~~~~-~gi~igs~~~~~ 257 (397)
+|+.|.+ ..|+|.+.+.+ ||+|+||.+..+. ++++++ + .+||+|+||++.+. +|++|++...
T Consensus 156 ~n~~i~~-----gDD~Iaiks~~~ni~v~n~~~~~gh-GisiGS~~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-- 227 (326)
T PF00295_consen 156 ENCFIDN-----GDDCIAIKSGSGNILVENCTCSGGH-GISIGSEGSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-- 227 (326)
T ss_dssp ESEEEES-----SSESEEESSEECEEEEESEEEESSS-EEEEEEESSSSE--EEEEEEEEEEEEESESEEEEEEEETT--
T ss_pred EEeeccc-----ccCcccccccccceEEEeEEEeccc-cceeeeccCCccccEEEeEEEEEEEeeccceEEEEEEecc--
Confidence 9999998 45889998766 9999999998764 588875 2 47999999999876 6899988531
Q ss_pred CcCcEEEEEEEeeEEECCcceEEEEeecCC--------CCceEEcEEEEeeeeccCc-ccEEEEeecCCCCCCCCCCCcc
Q 042768 258 VEEGVQNVTVFKTVFTGTTNGFRIKSWARP--------SNGFVQGVRFIDAVMRNVQ-FPIVIDQNYCPHNLNCPGQVSG 328 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~--------~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~ 328 (397)
..+.++||+|+|+++.+...++.|...+.. ....++||+|+|++..... .++.+... +.
T Consensus 228 ~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~~~~i~i~~~------------~~ 295 (326)
T PF00295_consen 228 GGGYVSNITFENITMENVKYPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAGSSAISIDCS------------PG 295 (326)
T ss_dssp TSEEEEEEEEEEEEEEEESEEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEESTSEEEEEE-B------------TT
T ss_pred cceEEeceEEEEEEecCCceEEEEEeccccccccCcccCCceEEEEEEEeeEEEeccceEEEEEEC------------Cc
Confidence 346799999999999999999998865431 2357999999999998765 56766632 22
Q ss_pred eEEEeEEEEeEEEee
Q 042768 329 VKISDVIYQDIRGTS 343 (397)
Q Consensus 329 ~~i~nI~~~ni~~~~ 343 (397)
.+++||+|+|+.++.
T Consensus 296 ~~~~ni~f~nv~i~~ 310 (326)
T PF00295_consen 296 SPCSNITFENVNITG 310 (326)
T ss_dssp SSEEEEEEEEEEEES
T ss_pred CcEEeEEEEeEEEEc
Confidence 369999999999987
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.80 E-value=4.9e-17 Score=157.19 Aligned_cols=273 Identities=18% Similarity=0.221 Sum_probs=153.5
Q ss_pred CcEEEEcCcEEEecc---eeecCCCCCcc-eEEEEc-cEEEeeccccccCCCcceEEEEeeeceEEec-cEEecCCCccc
Q 042768 65 SATLYVPKGRYLLGS---VAFNGDCKSSD-ITFRID-GTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALDAKGSSLW 138 (397)
Q Consensus 65 g~~v~~p~G~Y~~~~---l~l~~~~~s~~-v~l~~~-G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~idg~g~~~w 138 (397)
..++||+||+|.++. +.|+ + + .+++++ |.... +++.+....+|+.|.| |++.|....|-
T Consensus 232 ~~~lYF~PGVy~ig~~~~l~L~----s-n~~~VYlApGAyVk----------GAf~~~~~~~nv~i~G~GVLSGe~Yvy~ 296 (582)
T PF03718_consen 232 KDTLYFKPGVYWIGSDYHLRLP----S-NTKWVYLAPGAYVK----------GAFEYTDTQQNVKITGRGVLSGEQYVYE 296 (582)
T ss_dssp SSEEEE-SEEEEEBCTC-EEE-----T-T--EEEE-TTEEEE----------S-EEE---SSEEEEESSSEEE-TTS-TT
T ss_pred cceEEeCCceEEeCCCccEEEC----C-CccEEEEcCCcEEE----------EEEEEccCCceEEEEeeEEEcCcceeEe
Confidence 469999999999885 7776 4 5 589988 65443 3333334689999999 99998776653
Q ss_pred ccccCCC-------CCC-CCceeEE---EEccCCeEEEeeeEecCcceEEEEecee----cEEEEeEEEECCCCCCCCCc
Q 042768 139 ACKASGT-------NCP-DGATTLS---FTNSNNIRINGLLSLNSQMFHIVINGCK----DVHVEGVTVIAPGNSPNTDG 203 (397)
Q Consensus 139 ~~~~~~~-------~~~-~~~~~i~---~~~~~nv~I~~v~i~~~~~~~i~~~~~~----~v~i~n~~i~~~~~~~~~DG 203 (397)
....... .+. ..-+++. ...+++++++|++|.++|.|.+.+.... +..|+|.++..... .++||
T Consensus 297 A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~~~GiTI~~pP~~Sm~l~g~~~~~~~~~i~nyKqVGaW~-~qtDG 375 (582)
T PF03718_consen 297 ADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLTCEGITINDPPFHSMDLYGNENDKFSMNISNYKQVGAWY-FQTDG 375 (582)
T ss_dssp BBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEEEES-EEE--SS-SEEEESSSGGGEEEEEEEEEEE---C-TT---
T ss_pred ccCCCCccccccccccchhhhhhhhhhccCCcceEEEEeeEecCCCcceEEecCCccccccceeeceeeeeeEE-eccCC
Confidence 2111100 011 1124454 4456799999999999999999999655 58999999998665 79999
Q ss_pred ceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCC-e--EEEeeccccCCcCcEEEEEEEeeEEECCc----
Q 042768 204 IHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGH-G--ISIGSLAKDLVEEGVQNVTVFKTVFTGTT---- 276 (397)
Q Consensus 204 i~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~-g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~---- 276 (397)
|.+. ++-+|+||++...||+|-+.. +++.|+||+++..+ | +.+|.. ...++||.|+|+.+..++
T Consensus 376 i~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngpiiq~GW~-----pr~isnv~veni~IIh~r~~~~ 446 (582)
T PF03718_consen 376 IELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGPIIQWGWT-----PRNISNVSVENIDIIHNRWIWH 446 (582)
T ss_dssp -B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-SEE--CS--------EEEEEEEEEEEEE---SSG
T ss_pred cccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCCeEEeecc-----ccccCceEEeeeEEEeeeeecc
Confidence 9997 467789999999999997764 69999999999753 3 777764 346899999999998763
Q ss_pred -----ceEEEEee-c---CC-----CCceEEcEEEEeeeeccCc-ccEEEEeecCCCCCCCCCCCcceEEEeEEEEeEEE
Q 042768 277 -----NGFRIKSW-A---RP-----SNGFVQGVRFIDAVMRNVQ-FPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDIRG 341 (397)
Q Consensus 277 -----~gi~i~s~-~---~~-----~~g~v~nI~~~ni~~~~~~-~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni~~ 341 (397)
.+|.-.+. . +. ..-.+++++|+|+++|+.- ..++|..... .....|+|+.|+...+
T Consensus 447 ~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~l~ri~plqn---------~~nl~ikN~~~~~w~~ 517 (582)
T PF03718_consen 447 NNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPCLFRIYPLQN---------YDNLVIKNVHFESWNG 517 (582)
T ss_dssp GCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-ECEEE--SEE---------EEEEEEEEEEECEET-
T ss_pred cCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccceeEEEeecCC---------CcceEEEEeecccccC
Confidence 24432221 1 00 1126799999999999864 3556653211 1223456666654433
Q ss_pred eecCCceEEEe---cC---CCCceecEEEEeEEEEe
Q 042768 342 TSATPIAIKFD---CS---PKYPCQGIRLQNINLRH 371 (397)
Q Consensus 342 ~~~~~~~~~i~---~~---~~~~i~~i~~~nv~i~~ 371 (397)
..-......+. .. ......+|.|+|.++..
T Consensus 518 ~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg 553 (582)
T PF03718_consen 518 LDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGG 553 (582)
T ss_dssp CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETT
T ss_pred cccccceeeccccccccccccccccceEEEeEEECC
Confidence 21111111111 11 12357899999998853
No 19
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.73 E-value=2.4e-15 Score=142.84 Aligned_cols=227 Identities=21% Similarity=0.242 Sum_probs=144.3
Q ss_pred HHHHHHHHhhcCCCcEEEEcCcEEEe-cceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeeceEEec
Q 042768 52 FAKAWAAACASTESATLYVPKGRYLL-GSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGVSIIG 127 (397)
Q Consensus 52 iq~Ai~~ac~~~~g~~v~~p~G~Y~~-~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G 127 (397)
||+||++| .+|++|+||+|+|.+ +++.+.. + +++|..+| ++...... ...+..+... +++|+|++
T Consensus 1 iQ~Ai~~A---~~GDtI~l~~G~Y~~~~~l~I~~---~-~Iti~G~g~~~tvid~~~~---~~~~~~i~v~-a~~VtI~~ 69 (314)
T TIGR03805 1 LQEALIAA---QPGDTIVLPEGVFQFDRTLSLDA---D-GVTIRGAGMDETILDFSGQ---VGGAEGLLVT-SDDVTLSD 69 (314)
T ss_pred CHhHHhhC---CCCCEEEECCCEEEcceeEEEeC---C-CeEEEecCCCccEEecccC---CCCCceEEEE-eCCeEEEe
Confidence 69999876 679999999999986 5677752 4 79998875 33321111 0112233333 67888887
Q ss_pred cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEec-------CcceEEEEeceecEEEEeEEEECCCCCCC
Q 042768 128 GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLN-------SQMFHIVINGCKDVHVEGVTVIAPGNSPN 200 (397)
Q Consensus 128 G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~-------~~~~~i~~~~~~~v~i~n~~i~~~~~~~~ 200 (397)
-++...+ ...|.+.++++++|+++++.. ...+++.+..|++++|+++.+... .
T Consensus 70 ltI~~~~----------------~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~----~ 129 (314)
T TIGR03805 70 LAVENTK----------------GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGA----S 129 (314)
T ss_pred eEEEcCC----------------CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECC----C
Confidence 4443221 125777788888888888751 245778888888888888888762 3
Q ss_pred CCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEECCcc-e
Q 042768 201 TDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFTGTTN-G 278 (397)
Q Consensus 201 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~-g 278 (397)
.+||.+..|++++|++|++.....||.+.. +.++.|+++++... .|+.+-.....+ ....++++|+++++.+... .
T Consensus 130 d~GIyv~~s~~~~v~nN~~~~n~~GI~i~~-S~~~~v~~N~~~~N~~Gi~v~~~p~~~-~~~s~~~~v~~N~i~~n~~~n 207 (314)
T TIGR03805 130 DAGIYVGQSQNIVVRNNVAEENVAGIEIEN-SQNADVYNNIATNNTGGILVFDLPGLP-QPGGSNVRVFDNIIFDNNTPN 207 (314)
T ss_pred cccEEECCCCCeEEECCEEccCcceEEEEe-cCCcEEECCEEeccceeEEEeecCCCC-cCCccceEEECCEEECCCCCC
Confidence 347888888888888888887777777765 67788888877653 466664332111 2245678888888876521 1
Q ss_pred E-----EEEeecCCCCceE----EcEEEEeeeeccCcc-cEEEE
Q 042768 279 F-----RIKSWARPSNGFV----QGVRFIDAVMRNVQF-PIVID 312 (397)
Q Consensus 279 i-----~i~s~~~~~~g~v----~nI~~~ni~~~~~~~-~i~i~ 312 (397)
+ .+...+. ..|.+ +++.|+|.++++... ++.+.
T Consensus 208 ~~~~gn~v~~~~~-g~Gi~i~~~~~v~I~~N~i~~n~~~~i~~~ 250 (314)
T TIGR03805 208 FAPAGSIVASVPA-GTGVVVMANRDVEIFGNVISNNDTANVLIS 250 (314)
T ss_pred CcccCCceecCCC-CcEEEEEcccceEEECCEEeCCcceeEEEE
Confidence 1 1111111 23433 677888888877654 45554
No 20
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=99.43 E-value=5.8e-12 Score=113.04 Aligned_cols=252 Identities=19% Similarity=0.315 Sum_probs=154.3
Q ss_pred hhhHhHhHHHHHHHHHHHHHHhccccCceeEEeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEE--e-cc
Q 042768 3 RLFSSLFSSLFIILFILSINLASSYATTTTYNVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYL--L-GS 79 (397)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~--~-~~ 79 (397)
|+.++.|.....+|.++...++.+..+..++++.||-. .|.-++|..|+.+ +.||.+|+|--- + ..
T Consensus 5 klsrrtf~ta~sala~~hsp~~ra~~~~~~vni~dy~~-----~dwiasfkqaf~e------~qtvvvpagl~cenint~ 73 (464)
T PRK10123 5 KLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNP-----HDWIASFKQAFSE------GQTVVVPAGLVCDNINTG 73 (464)
T ss_pred chhhhhhhhhhhHHHHhcCHhhhhcCCCceeehhhcCc-----ccHHHHHHHHhcc------CcEEEecCccEecccccc
Confidence 55555654333333333222223333556899999986 5888999999854 589999999642 3 35
Q ss_pred eeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEE-c
Q 042768 80 VAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFT-N 158 (397)
Q Consensus 80 l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~-~ 158 (397)
+.++ . +.||.+.|.|.+... +.++.-++ ..+.| .+ ..+-+.|.+. .
T Consensus 74 ifip----~-gktl~v~g~l~gngr-------grfvlqdg---~qv~g-----e~-------------~g~~hnitldvr 120 (464)
T PRK10123 74 IFIP----P-GKTLHILGSLRGNGR-------GRFVLQDG---SQVTG-----EE-------------GGSMHNITLDVR 120 (464)
T ss_pred eEeC----C-CCeEEEEEEeecCCc-------eeEEEecC---CEeec-----CC-------------CceeeeEEEeec
Confidence 6676 3 789999998876433 23333333 23333 10 0011122222 3
Q ss_pred cCCeEEEeeeEecC-cceEEEE-----eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec-CCeeEEeCC-
Q 042768 159 SNNIRINGLLSLNS-QMFHIVI-----NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT-GDDCIPIGP- 230 (397)
Q Consensus 159 ~~nv~I~~v~i~~~-~~~~i~~-----~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~- 230 (397)
.+++.|+++.+..- |-..+.+ .--+|++|+++++....++--..|+|-.- ..++|.||.|.. ..|+|.+.-
T Consensus 121 gsdc~ikgiamsgfgpvtqiyiggk~prvmrnl~id~itv~~anyailrqgfhnq~-dgaritn~rfs~lqgdaiewnva 199 (464)
T PRK10123 121 GSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQI-IGANITNCKFSDLQGDAIEWNVA 199 (464)
T ss_pred cCceEEeeeeecccCceeEEEEcCCCchhhhccEEccEEEeeccHHHHhhhhhhcc-ccceeeccccccccCceEEEEEE
Confidence 45677777777532 2233333 34578889999988765555566777543 678899999987 557776543
Q ss_pred -CCeeEEE-----EeeEEeCC---CeEEEeeccc-----cCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEE
Q 042768 231 -GTKNLWI-----ERVTCGPG---HGISIGSLAK-----DLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVR 296 (397)
Q Consensus 231 -~~~ni~i-----~n~~~~~~---~gi~igs~~~-----~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~ 296 (397)
.-+|++| +...|.++ +||.||..|. |++...+.|+.+.|++-.+++.-+.+.. + ..-.++||.
T Consensus 200 indr~ilisdhvie~inctngkinwgigiglagstydn~ype~q~vknfvvanitgs~crqlvhven--g-khfvirnvk 276 (464)
T PRK10123 200 INDRDILISDHVIERINCTNGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVEN--G-KHFVIRNIK 276 (464)
T ss_pred ecccceeeehheheeecccCCcccceeeeeeccccccCCCchhhhhhhEEEEeccCcChhheEEecC--C-cEEEEEeee
Confidence 2345554 44556554 5888876643 5666779999999999888876555533 2 334566666
Q ss_pred EEeeee
Q 042768 297 FIDAVM 302 (397)
Q Consensus 297 ~~ni~~ 302 (397)
-+||+-
T Consensus 277 aknitp 282 (464)
T PRK10123 277 AKNITP 282 (464)
T ss_pred ccccCC
Confidence 666653
No 21
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.34 E-value=2.1e-11 Score=121.31 Aligned_cols=154 Identities=23% Similarity=0.283 Sum_probs=127.5
Q ss_pred cceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCC----eeEEeCCCCeeEEEEeeEEeCCC-e
Q 042768 173 QMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGD----DCIPIGPGTKNLWIERVTCGPGH-G 247 (397)
Q Consensus 173 ~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d----D~i~i~~~~~ni~i~n~~~~~~~-g 247 (397)
+...+.+..|+||.+++++|.+++. .++|+..|+|++++|.++.+.+ |++.+.+ ++|++|++|+|..++ .
T Consensus 237 rp~~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~ 311 (542)
T COG5434 237 RPRTVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDC 311 (542)
T ss_pred CCceEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCce
Confidence 4557889999999999999999643 6799999999999999998854 5999988 999999999999886 4
Q ss_pred EEEeeccccC---CcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCC
Q 042768 248 ISIGSLAKDL---VEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPG 324 (397)
Q Consensus 248 i~igs~~~~~---~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~ 324 (397)
+++.+..... .....++|+|+||.|.....++.+.++ .+|.++||+++|+.|.+...+++|+....
T Consensus 312 I~iksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse---~~ggv~ni~ved~~~~~~d~GLRikt~~~-------- 380 (542)
T COG5434 312 IAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSE---MGGGVQNITVEDCVMDNTDRGLRIKTNDG-------- 380 (542)
T ss_pred EEeecccCCcccccccccccEEEecceecccccceEeeee---cCCceeEEEEEeeeeccCcceeeeeeecc--------
Confidence 8887742211 123369999999999988777888887 45889999999999999999999998644
Q ss_pred CCcceEEEeEEEEeEEEeec
Q 042768 325 QVSGVKISDVIYQDIRGTSA 344 (397)
Q Consensus 325 ~~~~~~i~nI~~~ni~~~~~ 344 (397)
.++.++||+|+++.+...
T Consensus 381 --~gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 381 --RGGGVRNIVFEDNKMRNV 398 (542)
T ss_pred --cceeEEEEEEecccccCc
Confidence 336899999998887655
No 22
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=99.34 E-value=2.9e-10 Score=108.20 Aligned_cols=163 Identities=24% Similarity=0.346 Sum_probs=124.4
Q ss_pred eeceEEec-c----EEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEEC
Q 042768 120 VSGVSIIG-G----ALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIA 194 (397)
Q Consensus 120 ~~nv~I~G-G----~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~ 194 (397)
.++|+|.| | +|++.++. .....+ +..+++++|+++++.++..+++.+..|++++|+++++..
T Consensus 31 ~~~Iti~G~g~~~tvid~~~~~------------~~~~~i-~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~ 97 (314)
T TIGR03805 31 ADGVTIRGAGMDETILDFSGQV------------GGAEGL-LVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW 97 (314)
T ss_pred CCCeEEEecCCCccEEecccCC------------CCCceE-EEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe
Confidence 47888888 5 36665541 012234 446899999999999999999999999999999999974
Q ss_pred CCC---CCCCCcceeeceeeEEEEecEEecC-CeeEEeCCCCeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEe
Q 042768 195 PGN---SPNTDGIHVQLSMNVKITNCTIKTG-DDCIPIGPGTKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~---~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~i~~~~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n 269 (397)
... ....+||.+..|++++|++|.+... |++|.++. +++++|+||+++.. .||.+-. ..++.|++
T Consensus 98 ~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~i~~---------S~~~~v~~ 167 (314)
T TIGR03805 98 TGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIEIEN---------SQNADVYN 167 (314)
T ss_pred ccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEEEEe---------cCCcEEEC
Confidence 321 1357899999999999999999984 56899986 89999999999875 4777632 24789999
Q ss_pred eEEECCcceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 270 TVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 270 ~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
+++.+...|+.+-..++.....-+++++++.++.+.
T Consensus 168 N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 168 NIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred CEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 999998889988655432222346777777777544
No 23
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.83 E-value=4.2e-08 Score=87.78 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=16.0
Q ss_pred eceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEE
Q 042768 207 QLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTC 242 (397)
Q Consensus 207 ~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~ 242 (397)
++++||.|+|+++.+.| + ++. ++||+|.|+.+
T Consensus 153 q~~kNvei~ns~l~sKD-A--FWn-~eNVtVyDS~i 184 (277)
T PF12541_consen 153 QYCKNVEIHNSKLDSKD-A--FWN-CENVTVYDSVI 184 (277)
T ss_pred eceeeEEEEccEEeccc-c--ccc-CCceEEEcceE
Confidence 34555555555555543 1 222 55555555554
No 24
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.2e-07 Score=84.58 Aligned_cols=138 Identities=22% Similarity=0.266 Sum_probs=78.1
Q ss_pred eEEEEccEEEeeccccccCCCcceEEEEeeeceEEec-c---EEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEe
Q 042768 91 ITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-G---ALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRING 166 (397)
Q Consensus 91 v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G---~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~ 166 (397)
+.|.+.|+|..+. ++ ...+.+..+.|++|.| | ++.|- .+.++...||.|++
T Consensus 77 ~ii~v~Gti~~s~-ps-----~~k~~iki~sNkTivG~g~~a~~~g~-------------------gl~i~~a~NVIirN 131 (345)
T COG3866 77 VIIVVKGTITAST-PS-----DKKITIKIGSNKTIVGSGADATLVGG-------------------GLKIRDAGNVIIRN 131 (345)
T ss_pred EEEEEcceEeccC-CC-----CceEEEeeccccEEEeeccccEEEec-------------------eEEEEeCCcEEEEe
Confidence 4667778777652 11 1136666788888888 4 33322 13444455555555
Q ss_pred eeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCccee-eceeeEEEEecEEec---------CCeeEEeCCCCeeEE
Q 042768 167 LLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHV-QLSMNVKITNCTIKT---------GDDCIPIGPGTKNLW 236 (397)
Q Consensus 167 v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~-~~s~nv~I~n~~i~~---------~dD~i~i~~~~~ni~ 236 (397)
++|...+.| -++-|+|.+ ..++|++|++|+|.. +|..+.++.++..|+
T Consensus 132 ltf~~~~~~----------------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyIT 189 (345)
T COG3866 132 LTFEGFYQG----------------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYIT 189 (345)
T ss_pred eEEEeeccC----------------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEE
Confidence 555443311 112356666 456677777777764 345566777777777
Q ss_pred EEeeEEeCCC-eEEEeeccccCCcCcEEEEEEEeeEEECC
Q 042768 237 IERVTCGPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 237 i~n~~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 275 (397)
|++|+|...+ ++-+|+.-......+-.+|++++|.|.+.
T Consensus 190 iS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 190 ISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred EEeeeeecCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 7777776654 45555542211123345677777777764
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.80 E-value=1.1e-07 Score=85.12 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=55.8
Q ss_pred EEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeE
Q 042768 156 FTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNL 235 (397)
Q Consensus 156 ~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni 235 (397)
|+.|++++++++++.+++-. +..|++++++|+.+.+. + -...|+|+.|++..+... ..-.+++||
T Consensus 94 fR~~~~i~L~nv~~~~A~Et---~W~c~~i~l~nv~~~gd-Y-------f~m~s~ni~id~l~~~Gn----Y~Fq~~kNv 158 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADET---LWNCRGIKLKNVQANGD-Y-------FFMNSENIYIDNLVLDGN----YSFQYCKNV 158 (277)
T ss_pred hhcccCcEEEeeEeCCCccc---CEEeCCeEEEeEEEece-E-------eeeeccceEEeceEEeCC----EEeeceeeE
Confidence 56677777777777666543 33567777777777431 1 123467777777766531 111237888
Q ss_pred EEEeeEEeCCCeEEEeeccccCCcCcEEEEEEEeeEEECC
Q 042768 236 WIERVTCGPGHGISIGSLAKDLVEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 236 ~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 275 (397)
.|+|+++..-++ .-..+||+|.|..+.+-
T Consensus 159 ei~ns~l~sKDA-----------FWn~eNVtVyDS~i~GE 187 (277)
T PF12541_consen 159 EIHNSKLDSKDA-----------FWNCENVTVYDSVINGE 187 (277)
T ss_pred EEEccEEecccc-----------cccCCceEEEcceEeee
Confidence 888887643221 12356677776666653
No 26
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=98.78 E-value=3.3e-07 Score=88.84 Aligned_cols=146 Identities=19% Similarity=0.151 Sum_probs=102.3
Q ss_pred eEEEEccCCeEEEeeeEecCc------ceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec-CCee
Q 042768 153 TLSFTNSNNIRINGLLSLNSQ------MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT-GDDC 225 (397)
Q Consensus 153 ~i~~~~~~nv~I~~v~i~~~~------~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~ 225 (397)
++.-...++++|++++|.++. ..+|.+..|++++|++++|.++. .-||+++.|+ ..|.++.+.. .+.+
T Consensus 108 lIiai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg----~FGI~L~~~~-~~I~~N~I~g~~~~~ 182 (455)
T TIGR03808 108 LLSSEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSG----GNGIWLETVS-GDISGNTITQIAVTA 182 (455)
T ss_pred EEEEecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCC----cceEEEEcCc-ceEecceEeccccce
Confidence 466778999999999998765 34788999999999999999842 3578888877 6666666654 4555
Q ss_pred EEeCCCCeeEEEEeeEEeCCC--eEEEeec------------------------cccCCc---CcEEEEEEEeeEEECCc
Q 042768 226 IPIGPGTKNLWIERVTCGPGH--GISIGSL------------------------AKDLVE---EGVQNVTVFKTVFTGTT 276 (397)
Q Consensus 226 i~i~~~~~ni~i~n~~~~~~~--gi~igs~------------------------~~~~~~---~~v~ni~i~n~~~~~~~ 276 (397)
|.++. ++++.|+++++.... ||.+.-. ++++.. ....+++|+++++.+++
T Consensus 183 I~lw~-S~g~~V~~N~I~g~RD~gi~i~r~~~~~dg~~v~~n~i~~i~a~~gg~~~~GNGI~~~~a~~v~V~gN~I~~~r 261 (455)
T TIGR03808 183 IVSFD-ALGLIVARNTIIGANDNGIEILRSAIGDDGTIVTDNRIEDIKAGPGGSGQYGNAINAFRAGNVIVRGNRIRNCD 261 (455)
T ss_pred EEEec-cCCCEEECCEEEccCCCCeEEEEeeecCCcceeeccccccccccCCCcCCccccEEEEccCCeEEECCEEeccc
Confidence 66555 677777777776542 4444321 111100 12467889999999998
Q ss_pred -ceEEEEeecCCCCceEEcEEEEeeeeccCcc-cEEEE
Q 042768 277 -NGFRIKSWARPSNGFVQGVRFIDAVMRNVQF-PIVID 312 (397)
Q Consensus 277 -~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~-~i~i~ 312 (397)
.|+++.+. +|+.|.+.++++..+ +++..
T Consensus 262 ~dgI~~nss--------s~~~i~~N~~~~~R~~alhym 291 (455)
T TIGR03808 262 YSAVRGNSA--------SNIQITGNSVSDVREVALYSE 291 (455)
T ss_pred cceEEEEcc--------cCcEEECcEeeeeeeeEEEEE
Confidence 89988764 347777777777766 66544
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.71 E-value=1.7e-07 Score=79.59 Aligned_cols=140 Identities=24% Similarity=0.277 Sum_probs=97.9
Q ss_pred eEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCC
Q 042768 153 TLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGT 232 (397)
Q Consensus 153 ~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~ 232 (397)
.|.+....+++|++++|.+...+++.+..+..++|++++|.. ...|+.+....++++++|.+.....++.+. ..
T Consensus 2 Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~i~n~~i~~-----~~~gi~~~~~~~~~i~~~~~~~~~~~i~~~-~~ 75 (158)
T PF13229_consen 2 GISINNGSNVTIRNCTISNNGGDGIHVSGSSNITIENCTISN-----GGYGIYVSGGSNVTISNNTISDNGSGIYVS-GS 75 (158)
T ss_dssp CEEETTCEC-EEESEEEESSSSECEEE-SSCESEEES-EEES-----STTSEEEECCES-EEES-EEES-SEEEECC-S-
T ss_pred EEEEECCcCeEEeeeEEEeCCCeEEEEEcCCCeEEECeEEEC-----CCcEEEEecCCCeEEECeEEEEccceEEEE-ec
Confidence 367788889999999999999999999999999999999998 456899998899999999999877777777 48
Q ss_pred eeEEEEeeEEeCC-C-eEEEeeccccCCcCcEEEEEEEeeEEECCc-ceEEEEeecCCCCceEEcEEEEeeeeccCc-cc
Q 042768 233 KNLWIERVTCGPG-H-GISIGSLAKDLVEEGVQNVTVFKTVFTGTT-NGFRIKSWARPSNGFVQGVRFIDAVMRNVQ-FP 308 (397)
Q Consensus 233 ~ni~i~n~~~~~~-~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~-~~ 308 (397)
.+++|++|.+... . |+.+.. ...+++|+++++.+.. .|+.+.... -.+++++++++.+.. .+
T Consensus 76 ~~~~i~~~~i~~~~~~gi~~~~--------~~~~~~i~~n~~~~~~~~gi~~~~~~------~~~~~i~~n~i~~~~~~g 141 (158)
T PF13229_consen 76 SNITIENNRIENNGDYGIYISN--------SSSNVTIENNTIHNNGGSGIYLEGGS------SPNVTIENNTISNNGGNG 141 (158)
T ss_dssp CS-EEES-EEECSSS-SCE-TC--------EECS-EEES-EEECCTTSSCEEEECC--------S-EEECEEEECESSEE
T ss_pred CCceecCcEEEcCCCccEEEec--------cCCCEEEEeEEEEeCcceeEEEECCC------CCeEEEEEEEEEeCccee
Confidence 8999999999865 3 676632 1346999999999876 788776542 235777777776654 45
Q ss_pred EEEE
Q 042768 309 IVID 312 (397)
Q Consensus 309 i~i~ 312 (397)
+.+.
T Consensus 142 i~~~ 145 (158)
T PF13229_consen 142 IYLI 145 (158)
T ss_dssp EE-T
T ss_pred EEEE
Confidence 5443
No 28
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.68 E-value=1.3e-06 Score=79.63 Aligned_cols=159 Identities=18% Similarity=0.186 Sum_probs=104.8
Q ss_pred eEEEEccCCeEEEeeeEe-cCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCC
Q 042768 153 TLSFTNSNNIRINGLLSL-NSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 153 ~i~~~~~~nv~I~~v~i~-~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 231 (397)
.+.+.-+.|.+|.++.-. .-..|++.+....||.|+|++|+. .+..|+ .+|+|.|..+
T Consensus 94 k~~iki~sNkTivG~g~~a~~~g~gl~i~~a~NVIirNltf~~---~~~~d~------------------~~D~Isi~~~ 152 (345)
T COG3866 94 KITIKIGSNKTIVGSGADATLVGGGLKIRDAGNVIIRNLTFEG---FYQGDP------------------NYDAISIYDD 152 (345)
T ss_pred eEEEeeccccEEEeeccccEEEeceEEEEeCCcEEEEeeEEEe---eccCCC------------------CCCcEEeccC
Confidence 378888999999988743 234578888888999999999987 243333 1688999666
Q ss_pred CeeEEEEeeEEeCC---------Ce-EEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecC-CCCceEEcEEEEee
Q 042768 232 TKNLWIERVTCGPG---------HG-ISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWAR-PSNGFVQGVRFIDA 300 (397)
Q Consensus 232 ~~ni~i~n~~~~~~---------~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~-~~~g~v~nI~~~ni 300 (397)
.+||.|.+|+|..+ +| +-|+ .+...|+|+++.|.+...+.-+.+... .....-.+|+|.+.
T Consensus 153 ~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik--------~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhN 224 (345)
T COG3866 153 GHNIWIDHNTFSGGSYNASGSHGDGLVDIK--------KDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHN 224 (345)
T ss_pred CeEEEEEeeEeccccccccccCCCccEEec--------cCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecc
Confidence 99999999999752 24 4442 345689999999999988877765422 11234567888888
Q ss_pred eeccCc--cc-EEEE-----eecCCCCCCC-----CCCCcceEEEeEEEEeEE
Q 042768 301 VMRNVQ--FP-IVID-----QNYCPHNLNC-----PGQVSGVKISDVIYQDIR 340 (397)
Q Consensus 301 ~~~~~~--~~-i~i~-----~~~~~~~~~~-----~~~~~~~~i~nI~~~ni~ 340 (397)
.+++.. .| +++. -.|.+....- -.......+|+-.|++.+
T Consensus 225 yFkn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~~iG~~AkiyvE~NyF~~~~ 277 (345)
T COG3866 225 YFKNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAITIGTSAKIYVENNYFENGS 277 (345)
T ss_pred ccccccccCCceEeeEEEEeccccccCcccceEEeeccceEEEEecceeccCC
Confidence 887753 23 3333 2333311100 011244667888888763
No 29
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.65 E-value=3.6e-06 Score=82.63 Aligned_cols=245 Identities=14% Similarity=0.180 Sum_probs=129.6
Q ss_pred CCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccc------cccCC-Cc---------ceE---EEEeeeceE
Q 042768 64 ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADY------RVLGQ-AD---------NWL---SFEGVSGVS 124 (397)
Q Consensus 64 ~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~------~~~~~-~~---------~~i---~~~~~~nv~ 124 (397)
...+|||.||.|.-+.+..... ++ ++.+.+.|+|-...-. +.|.. .+ .++ ...+.++..
T Consensus 255 n~~~VYlApGAyVkGAf~~~~~-~~-nv~i~G~GVLSGe~Yvy~A~~~e~y~~~s~A~~~~~~~lkm~~~~~~~g~q~~~ 332 (582)
T PF03718_consen 255 NTKWVYLAPGAYVKGAFEYTDT-QQ-NVKITGRGVLSGEQYVYEADTEESYLHLSGAVKCHRESLKMLWHISANGGQTLT 332 (582)
T ss_dssp T--EEEE-TTEEEES-EEE----SS-EEEEESSSEEE-TTS-TTBBCCCTTSB-SSC---TTTB--SEEECS-SSSEEEE
T ss_pred CccEEEEcCCcEEEEEEEEccC-Cc-eEEEEeeEEEcCcceeEeccCCCCccccccccccchhhhhhhhhhccCCcceEE
Confidence 4579999999999999876522 25 7888888888763211 11110 00 112 233456777
Q ss_pred EeccEEecCCCcccccccCCCCCCCCceeEEEEccC----CeEEEeeeEecCcceEEE-EeceecEEEEeEEEECCCCCC
Q 042768 125 IIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSN----NIRINGLLSLNSQMFHIV-INGCKDVHVEGVTVIAPGNSP 199 (397)
Q Consensus 125 I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~----nv~I~~v~i~~~~~~~i~-~~~~~~v~i~n~~i~~~~~~~ 199 (397)
+.|-+|... ++| .+.+.+-. +.+|++.+...+-.|.-+ +.-+++-+|+||.++.
T Consensus 333 ~~GiTI~~p--P~~--------------Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~nS~i~dcF~h~----- 391 (582)
T PF03718_consen 333 CEGITINDP--PFH--------------SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYPNSTIRDCFIHV----- 391 (582)
T ss_dssp EES-EEE----SS---------------SEEEESSSGGGEEEEEEEEEEE---CTT----B--TT-EEEEEEEEE-----
T ss_pred EEeeEecCC--Ccc--------------eEEecCCccccccceeeceeeeeeEEeccCCccccCCCeeeeeEEEe-----
Confidence 777555422 222 35566444 478999999877665322 2334788899999998
Q ss_pred CCCcceeeceeeEEEEecEEecC--CeeEEeCC---CCeeEEEEeeEEeC----------CCeEEEeecccc-----C--
Q 042768 200 NTDGIHVQLSMNVKITNCTIKTG--DDCIPIGP---GTKNLWIERVTCGP----------GHGISIGSLAKD-----L-- 257 (397)
Q Consensus 200 ~~DGi~~~~s~nv~I~n~~i~~~--dD~i~i~~---~~~ni~i~n~~~~~----------~~gi~igs~~~~-----~-- 257 (397)
+.|+|.+.. +++.|+||.+... +-.|.++. ..+||.|+|+.+-. ..+| +++...| .
T Consensus 392 nDD~iKlYh-S~v~v~~~ViWk~~Ngpiiq~GW~pr~isnv~veni~IIh~r~~~~~~~~n~~I-~~ss~~y~~~~s~~~ 469 (582)
T PF03718_consen 392 NDDAIKLYH-SNVSVSNTVIWKNENGPIIQWGWTPRNISNVSVENIDIIHNRWIWHNNYVNTAI-LGSSPFYDDMASTKT 469 (582)
T ss_dssp SS-SEE--S-TTEEEEEEEEEE-SSS-SEE--CS---EEEEEEEEEEEEE---SSGGCTTT-EC-EEE--BTTS-SSS--
T ss_pred cCchhheee-cCcceeeeEEEecCCCCeEEeeccccccCceEEeeeEEEeeeeecccCCCCcee-EecccccccccCCCC
Confidence 678898887 6999999999873 33444443 25799999986521 1133 2332222 0
Q ss_pred --CcCcEEEEEEEeeEEECCcce-EEEEeecCCCCceEEcEEEEeeeeccCc-----c-cEEEEeecCCCCCCCCCCCcc
Q 042768 258 --VEEGVQNVTVFKTVFTGTTNG-FRIKSWARPSNGFVQGVRFIDAVMRNVQ-----F-PIVIDQNYCPHNLNCPGQVSG 328 (397)
Q Consensus 258 --~~~~v~ni~i~n~~~~~~~~g-i~i~s~~~~~~g~v~nI~~~ni~~~~~~-----~-~i~i~~~~~~~~~~~~~~~~~ 328 (397)
....+++++|+|+++++...+ ++|... .-.+|+.++|+.++.-. . --.++..+... ....
T Consensus 470 adp~~ti~~~~~~nv~~EG~~~~l~ri~pl-----qn~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~------~~~~ 538 (582)
T PF03718_consen 470 ADPSTTIRNMTFSNVRCEGMCPCLFRIYPL-----QNYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMA------NNKQ 538 (582)
T ss_dssp BEEEEEEEEEEEEEEEEECCE-ECEEE--S-----EEEEEEEEEEEEECEET-CGCSTT-EEE---CCTT------T--B
T ss_pred CCcccceeeEEEEeEEEecccceeEEEeec-----CCCcceEEEEeecccccCcccccceeecccccccc------cccc
Confidence 112368999999999996544 577654 34677888888877321 1 11222222211 1123
Q ss_pred eEEEeEEEEeEEEeec
Q 042768 329 VKISDVIYQDIRGTSA 344 (397)
Q Consensus 329 ~~i~nI~~~ni~~~~~ 344 (397)
....+|.|+|.++.++
T Consensus 539 ~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 539 NDTMGIIIENWTVGGE 554 (582)
T ss_dssp --EEEEEEEEEEETTE
T ss_pred ccccceEEEeEEECCE
Confidence 4578888888887543
No 30
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.8e-05 Score=73.33 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=103.6
Q ss_pred CCCcEEEEcCcEEEecceeecCCCCCcceEEEEc-c-EEEeeccccccCCCcceEEEEeeeceEEeccEEecCCCccccc
Q 042768 63 TESATLYVPKGRYLLGSVAFNGDCKSSDITFRID-G-TLVAPADYRVLGQADNWLSFEGVSGVSIIGGALDAKGSSLWAC 140 (397)
Q Consensus 63 ~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~-G-~l~~~~~~~~~~~~~~~i~~~~~~nv~I~GG~idg~g~~~w~~ 140 (397)
.+|+.+-+. |+|- +.+.+. . .++|+.+ | +|-.... +..+... ++++.++|-+..+.|.....
T Consensus 32 ~pgd~~~i~-g~~~-g~~vIn----r-~l~l~ge~ga~l~g~g~-------G~~vtv~-aP~~~v~Gl~vr~sg~~lp~- 95 (408)
T COG3420 32 KPGDYYGIS-GRYA-GNFVIN----R-ALTLRGENGAVLDGGGK-------GSYVTVA-APDVIVEGLTVRGSGRSLPA- 95 (408)
T ss_pred CCCcEEEEe-eeec-ccEEEc----c-ceeeccccccEEecCCc-------ccEEEEe-CCCceeeeEEEecCCCCccc-
Confidence 467777777 7764 233332 1 3555544 3 3322111 3345554 78888888666666653211
Q ss_pred ccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCC---CCCCCcceeeceeeEEEEec
Q 042768 141 KASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGN---SPNTDGIHVQLSMNVKITNC 217 (397)
Q Consensus 141 ~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~---~~~~DGi~~~~s~nv~I~n~ 217 (397)
-....+.....+.-.|+...+... .+++.+..+.++.|++.+|....+ .....||+++.+++.+|..+
T Consensus 96 --------m~agI~v~~~at~A~Vr~N~l~~n-~~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~n 166 (408)
T COG3420 96 --------MDAGIFVGRTATGAVVRHNDLIGN-SFGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGN 166 (408)
T ss_pred --------ccceEEeccCcccceEEccccccc-ceEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcC
Confidence 112234444566677777777654 478999999999999999997544 24577999999999999999
Q ss_pred EEecCCeeEEeCCCCeeEEEEeeEEeC
Q 042768 218 TIKTGDDCIPIGPGTKNLWIERVTCGP 244 (397)
Q Consensus 218 ~i~~~dD~i~i~~~~~ni~i~n~~~~~ 244 (397)
.+..+.|||.... +++-.|+++.++.
T Consensus 167 disy~rDgIy~~~-S~~~~~~gnr~~~ 192 (408)
T COG3420 167 DISYGRDGIYSDT-SQHNVFKGNRFRD 192 (408)
T ss_pred ccccccceEEEcc-cccceecccchhh
Confidence 9999999998887 6677777776654
No 31
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=98.60 E-value=1.7e-05 Score=77.08 Aligned_cols=46 Identities=24% Similarity=0.368 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEcCcEEEecceeecCC-CCCcceEEEEc
Q 042768 48 STQAFAKAWAAACASTESATLYVPKGRYLLGSVAFNGD-CKSSDITFRID 96 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~l~~~-~~s~~v~l~~~ 96 (397)
+.++||+||+.| .+|++|+++.|+|.-..+.+++. .++++++|.-+
T Consensus 3 s~~~lq~Ai~~a---~pGD~I~L~~Gty~~~~i~~~~~GT~~~PItl~Ae 49 (425)
T PF14592_consen 3 SVAELQSAIDNA---KPGDTIVLADGTYKDVEIVFKGSGTAAKPITLRAE 49 (425)
T ss_dssp SHHHHHHHHHH-----TT-EEEE-SEEEET-EEEE-S--BTTB-EEEEES
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeecceEEEEecccCCCCEEEEec
Confidence 568999999877 78999999999998444554321 01114666654
No 32
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=98.58 E-value=6.9e-06 Score=74.59 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEcCcEEEec-----ceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACASTESATLYVPKGRYLLG-----SVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~-----~l~l~~~~~s~~v~l~~~G 97 (397)
.-+.|++||+.| ..|.+|++.||+|... ++.++ + .++|+++.
T Consensus 14 P~~Ti~~A~~~a---~~g~~i~l~~GtY~~~~ge~fPi~i~----~-gVtl~G~~ 60 (246)
T PF07602_consen 14 PFKTITKALQAA---QPGDTIQLAPGTYSEATGETFPIIIK----P-GVTLIGNE 60 (246)
T ss_pred CHHHHHHHHHhC---CCCCEEEECCceeccccCCcccEEec----C-CeEEeecc
Confidence 346899999876 6789999999999764 36665 4 68887653
No 33
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.53 E-value=8.6e-07 Score=75.25 Aligned_cols=139 Identities=27% Similarity=0.327 Sum_probs=92.4
Q ss_pred EEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECC
Q 042768 116 SFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAP 195 (397)
Q Consensus 116 ~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~ 195 (397)
.+.+..+++|.+.++...+ ...|.+..+..++|++.+|.+ ...++.+....+++++++.+...
T Consensus 4 ~i~~~~~~~i~~~~i~~~~----------------~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~ 66 (158)
T PF13229_consen 4 SINNGSNVTIRNCTISNNG----------------GDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDN 66 (158)
T ss_dssp EETTCEC-EEESEEEESSS----------------SECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-
T ss_pred EEECCcCeEEeeeEEEeCC----------------CeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEc
Confidence 3444566777775554332 235888888889999999999 77889999999999999999984
Q ss_pred CCCCCCCcceeeceeeEEEEecEEecC-CeeEEeCCCCeeEEEEeeEEeCC--CeEEEeeccccCCcCcEEEEEEEeeEE
Q 042768 196 GNSPNTDGIHVQLSMNVKITNCTIKTG-DDCIPIGPGTKNLWIERVTCGPG--HGISIGSLAKDLVEEGVQNVTVFKTVF 272 (397)
Q Consensus 196 ~~~~~~DGi~~~~s~nv~I~n~~i~~~-dD~i~i~~~~~ni~i~n~~~~~~--~gi~igs~~~~~~~~~v~ni~i~n~~~ 272 (397)
. .|+.+..+.+++|++|.+... +.+|.+.....+++|++|++... .|+.+... .-.+++|++|++
T Consensus 67 ~-----~~i~~~~~~~~~i~~~~i~~~~~~gi~~~~~~~~~~i~~n~~~~~~~~gi~~~~~-------~~~~~~i~~n~i 134 (158)
T PF13229_consen 67 G-----SGIYVSGSSNITIENNRIENNGDYGIYISNSSSNVTIENNTIHNNGGSGIYLEGG-------SSPNVTIENNTI 134 (158)
T ss_dssp S-----EEEECCS-CS-EEES-EEECSSS-SCE-TCEECS-EEES-EEECCTTSSCEEEEC-------C--S-EEECEEE
T ss_pred c-----ceEEEEecCCceecCcEEEcCCCccEEEeccCCCEEEEeEEEEeCcceeEEEECC-------CCCeEEEEEEEE
Confidence 2 688888889999999999984 45888874267899999999864 57776442 134688999999
Q ss_pred ECCc-ceEEEEe
Q 042768 273 TGTT-NGFRIKS 283 (397)
Q Consensus 273 ~~~~-~gi~i~s 283 (397)
.+.. .|+.+..
T Consensus 135 ~~~~~~gi~~~~ 146 (158)
T PF13229_consen 135 SNNGGNGIYLIS 146 (158)
T ss_dssp ECESSEEEE-TT
T ss_pred EeCcceeEEEEC
Confidence 9875 6776543
No 34
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.51 E-value=7.7e-06 Score=74.92 Aligned_cols=134 Identities=23% Similarity=0.193 Sum_probs=105.6
Q ss_pred EEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEEC
Q 042768 115 LSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIA 194 (397)
Q Consensus 115 i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~ 194 (397)
+.+.+.+++.|.+.++.... ..+.+..+.+++|++.++.+. .+++++..+.+++|+++.+..
T Consensus 16 i~l~~~~~~~i~~n~i~~~~-----------------~gi~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~ 77 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNSR-----------------DGIYVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISN 77 (236)
T ss_pred EEEEeCCCCEEEcCEEEeCC-----------------CEEEEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEc
Confidence 44445666777664443222 246888999999999999888 889999999999999999998
Q ss_pred CCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEE
Q 042768 195 PGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFT 273 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~ 273 (397)
+..||.+..+.+.+|+++.+.....+|.+.. +.+.+|+++++... .||.+... .+.+|+++++.
T Consensus 78 -----n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~-s~~~~I~~N~i~~~~~GI~l~~s---------~~n~I~~N~i~ 142 (236)
T PF05048_consen 78 -----NGYGIYLMGSSNNTISNNTISNNGYGIYLYG-SSNNTISNNTISNNGYGIYLSSS---------SNNTITGNTIS 142 (236)
T ss_pred -----cCCCEEEEcCCCcEEECCEecCCCceEEEee-CCceEEECcEEeCCCEEEEEEeC---------CCCEEECeEEe
Confidence 3389999988877999999998777998876 67788999998743 57777431 47889999999
Q ss_pred CC-cceEEE
Q 042768 274 GT-TNGFRI 281 (397)
Q Consensus 274 ~~-~~gi~i 281 (397)
+. ..|+.+
T Consensus 143 ~n~~~Gi~~ 151 (236)
T PF05048_consen 143 NNTDYGIYF 151 (236)
T ss_pred CCCccceEE
Confidence 88 888883
No 35
>smart00656 Amb_all Amb_all domain.
Probab=98.49 E-value=5.5e-06 Score=73.08 Aligned_cols=100 Identities=21% Similarity=0.258 Sum_probs=74.3
Q ss_pred eEEEEeceecEEEEeEEEECCCCC--CCCCcceeeceeeEEEEecEEecC----------CeeEEeCCCCeeEEEEeeEE
Q 042768 175 FHIVINGCKDVHVEGVTVIAPGNS--PNTDGIHVQLSMNVKITNCTIKTG----------DDCIPIGPGTKNLWIERVTC 242 (397)
Q Consensus 175 ~~i~~~~~~~v~i~n~~i~~~~~~--~~~DGi~~~~s~nv~I~n~~i~~~----------dD~i~i~~~~~ni~i~n~~~ 242 (397)
.++.+..++||.|+|++|+..... ...|+|.+.++++|.|++|.+..+ |..+.++.++.++++++|.|
T Consensus 32 ~gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f 111 (190)
T smart00656 32 GGLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYF 111 (190)
T ss_pred eEEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceE
Confidence 345555577888888888875431 367999999999999999999986 55567888899999999999
Q ss_pred eCCC-eEEEeeccccCCcCcEEEEEEEeeEEECC
Q 042768 243 GPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 243 ~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 275 (397)
...+ +.-+|+.-... .....+|++.++.+.++
T Consensus 112 ~~h~~~~liG~~d~~~-~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 112 HNHWKVMLLGHSDSDT-DDGKMRVTIAHNYFGNL 144 (190)
T ss_pred ecCCEEEEEccCCCcc-ccccceEEEECcEEcCc
Confidence 7654 67777632111 11245899999999875
No 36
>PLN02176 putative pectinesterase
Probab=98.42 E-value=0.00019 Score=68.45 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .... --+|+|++|+|.-. |.++.. |. +++|+++|
T Consensus 50 df~TIq~AIdav-P~~~~~~~~I~Ik~GvY~Ek-V~Ip~~-k~-~vtl~G~g 97 (340)
T PLN02176 50 YFKTVQSAIDSI-PLQNQNWIRILIQNGIYREK-VTIPKE-KG-YIYMQGKG 97 (340)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEECCcEEEEE-EEECCC-Cc-cEEEEEcC
Confidence 477899999876 3222 23688999999853 444321 34 88888876
No 37
>PLN02480 Probable pectinesterase
Probab=98.41 E-value=0.0001 Score=70.51 Aligned_cols=197 Identities=16% Similarity=0.115 Sum_probs=104.0
Q ss_pred chHHHHHHHHHHHhhcCCCc----EEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeec
Q 042768 47 DSTQAFAKAWAAACASTESA----TLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 47 ddt~aiq~Ai~~ac~~~~g~----~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
.|-..||+||+++ +.+. +|+|.+|+|. ..+.+... |. +++|.++|. +.
T Consensus 58 g~f~TIQ~AIdaa---p~~~~~~~~I~Ik~GvY~-E~V~I~~~-kp-~ItL~G~g~----------------------~~ 109 (343)
T PLN02480 58 GDFTSVQSAIDAV---PVGNSEWIIVHLRKGVYR-EKVHIPEN-KP-FIFMRGNGK----------------------GR 109 (343)
T ss_pred CCcccHHHHHhhC---ccCCCceEEEEEcCcEEE-EEEEECCC-Cc-eEEEEecCC----------------------CC
Confidence 4688999999876 3333 4789999999 55566311 23 677766641 01
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCc---------ceEEEE-eceecEEEEeEEE
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQ---------MFHIVI-NGCKDVHVEGVTV 192 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~---------~~~i~~-~~~~~v~i~n~~i 192 (397)
..|.+ +... . . .... .......+++++++++|.|.. ...+.+ ..++.+.+.||++
T Consensus 110 TvI~~-----~~~~----~---~--~~~s-aTvtV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f 174 (343)
T PLN02480 110 TSIVW-----SQSS----S---D--NAAS-ATFTVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAF 174 (343)
T ss_pred eEEEc-----cccc----c---C--CCCc-eEEEEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEE
Confidence 11111 0000 0 0 0001 122334578888888888762 123433 3567777888888
Q ss_pred ECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC-------Ce-EEEeeccccCCcCcEEE
Q 042768 193 IAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-------HG-ISIGSLAKDLVEEGVQN 264 (397)
Q Consensus 193 ~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-------~g-i~igs~~~~~~~~~v~n 264 (397)
....| -+... ..+-.++||.|...=|-| + |....+++||++..- .| |.-.+. ....-..
T Consensus 175 ~G~QD-----TLy~~-~gR~yf~~C~IeG~VDFI-F--G~g~a~fe~C~i~s~~~~~~~~~G~ITA~~r----~~~~~~G 241 (343)
T PLN02480 175 YSTHN-----TLFDY-KGRHYYHSCYIQGSIDFI-F--GRGRSIFHNCEIFVIADRRVKIYGSITAHNR----ESEDNSG 241 (343)
T ss_pred ecccc-----eeEeC-CCCEEEEeCEEEeeeeEE-c--cceeEEEEccEEEEecCCCCCCceEEEcCCC----CCCCCCE
Confidence 76433 22211 235667777777544443 2 234677777777531 13 222111 0122346
Q ss_pred EEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeecc
Q 042768 265 VTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRN 304 (397)
Q Consensus 265 i~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~ 304 (397)
..|.||++.+.. ..++. +..+....+.|.|..|.+
T Consensus 242 fvF~~C~i~g~g-~~yLG----RPW~~ya~vVf~~t~l~~ 276 (343)
T PLN02480 242 FVFIKGKVYGIG-EVYLG----RAKGAYSRVIFAKTYLSK 276 (343)
T ss_pred EEEECCEEcccC-ceeee----cCCCCcceEEEEecccCC
Confidence 777888877642 22332 112234566677777654
No 38
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=98.36 E-value=1.1e-05 Score=74.01 Aligned_cols=135 Identities=22% Similarity=0.181 Sum_probs=110.4
Q ss_pred eeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCC
Q 042768 152 TTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 152 ~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 231 (397)
..|.+.++++..|++.++.+.. .++.+..+.+++|++++|.. +..||++..+++++|+++.+.....+|.+..
T Consensus 14 ~Gi~l~~~~~~~i~~n~i~~~~-~gi~~~~s~~~~I~~n~i~~-----~~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~- 86 (236)
T PF05048_consen 14 NGIYLWNSSNNSIENNTISNSR-DGIYVENSDNNTISNNTISN-----NRYGIHLMGSSNNTIENNTISNNGYGIYLMG- 86 (236)
T ss_pred CcEEEEeCCCCEEEcCEEEeCC-CEEEEEEcCCeEEEeeEEEC-----CCeEEEEEccCCCEEEeEEEEccCCCEEEEc-
Confidence 3588999999999999997654 57789999999999999998 4689999999999999999999779999988
Q ss_pred CeeEEEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeeeeccC-cccE
Q 042768 232 TKNLWIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNV-QFPI 309 (397)
Q Consensus 232 ~~ni~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~-~~~i 309 (397)
+.+.+|+++++... .||.+.. ..+.+|+++++.+...||.+... .+.++++.++.+. ..+|
T Consensus 87 s~~~~I~~N~i~~n~~GI~l~~---------s~~~~I~~N~i~~~~~GI~l~~s--------~~n~I~~N~i~~n~~~Gi 149 (236)
T PF05048_consen 87 SSNNTISNNTISNNGYGIYLYG---------SSNNTISNNTISNNGYGIYLSSS--------SNNTITGNTISNNTDYGI 149 (236)
T ss_pred CCCcEEECCEecCCCceEEEee---------CCceEEECcEEeCCCEEEEEEeC--------CCCEEECeEEeCCCccce
Confidence 44559999999864 4776632 23588999999988899998753 3467777777766 6677
Q ss_pred E
Q 042768 310 V 310 (397)
Q Consensus 310 ~ 310 (397)
.
T Consensus 150 ~ 150 (236)
T PF05048_consen 150 Y 150 (236)
T ss_pred E
Confidence 7
No 39
>PLN02497 probable pectinesterase
Probab=98.35 E-value=0.00015 Score=68.79 Aligned_cols=46 Identities=22% Similarity=0.133 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .... --+++|-+|+|.-. +.++.. |. +++|+++|
T Consensus 43 df~TIq~AIdav-P~~~~~~~~I~Ik~G~Y~Ek-V~Ip~~-k~-~itl~G~g 90 (331)
T PLN02497 43 NFTTIQSAIDSV-PSNNKHWFCINVKAGLYREK-VKIPYD-KP-FIVLVGAG 90 (331)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCcEEEEE-EEecCC-CC-cEEEEecC
Confidence 477899999876 3222 23689999999754 444211 24 88888775
No 40
>PLN02773 pectinesterase
Probab=98.33 E-value=0.00019 Score=67.92 Aligned_cols=46 Identities=20% Similarity=0.084 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .... --+|+|.+|+|.- .|.+... |. +++|.+++
T Consensus 16 df~TIq~Aida~-P~~~~~~~~I~Ik~G~Y~E-~V~I~~~-k~-~itl~G~~ 63 (317)
T PLN02773 16 DYCTVQDAIDAV-PLCNRCRTVIRVAPGVYRQ-PVYVPKT-KN-LITLAGLS 63 (317)
T ss_pred CccCHHHHHhhc-hhcCCceEEEEEeCceEEE-EEEECcC-Cc-cEEEEeCC
Confidence 477899999876 3222 2478899999984 4555321 23 78888875
No 41
>PLN02665 pectinesterase family protein
Probab=98.31 E-value=0.00033 Score=67.45 Aligned_cols=201 Identities=14% Similarity=0.106 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeeceEE
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSI 125 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 125 (397)
|-..||+||+++ .... --+|+|.+|+|.- .+.+... |. +++|++++.= ...|...+..
T Consensus 79 df~TIq~AIdai-P~~~~~r~vI~Ik~GvY~E-kV~Ip~~-kp-~Itl~G~~~~------------~tiIt~~~~a---- 138 (366)
T PLN02665 79 DFKTITDAIKSI-PAGNTQRVIIDIGPGEYNE-KITIDRS-KP-FVTLYGSPGA------------MPTLTFDGTA---- 138 (366)
T ss_pred CccCHHHHHhhC-cccCCceEEEEEeCcEEEE-EEEecCC-CC-EEEEEecCCC------------CCEEEECCcc----
Confidence 477899999875 3221 2367899999984 3444311 24 7888877510 0001110000
Q ss_pred ec-cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc---------eEEEE-eceecEEEEeEEEEC
Q 042768 126 IG-GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHVEGVTVIA 194 (397)
Q Consensus 126 ~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~---------~~i~~-~~~~~v~i~n~~i~~ 194 (397)
.. |+ ....-....++++..++++|+|... ..+-+ ...+...+.||++..
T Consensus 139 ~~~gT--------------------~~SaTv~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G 198 (366)
T PLN02665 139 AKYGT--------------------VYSATLIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIG 198 (366)
T ss_pred CCCCC--------------------cceEEEEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceecc
Confidence 00 11 0112334557888888888887531 12222 235667777777776
Q ss_pred CCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeC-CC---e-EEEeeccccCCcCcEEEEEEEe
Q 042768 195 PGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP-GH---G-ISIGSLAKDLVEEGVQNVTVFK 269 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~-~~---g-i~igs~~~~~~~~~v~ni~i~n 269 (397)
..| -+... ..+-.++||.|...=|-|- + .....+++|++.. .. | |.--+ + .....-....|.|
T Consensus 199 ~QD-----TL~~~-~gr~yf~~CyIeG~VDFIF-G--~g~a~fe~C~i~s~~~~~~g~ITA~~--r-~~~~~~~GfvF~~ 266 (366)
T PLN02665 199 FQD-----TLCDD-KGRHFFKDCYIEGTVDFIF-G--SGKSLYLNTELHVVGDGGLRVITAQA--R-NSEAEDSGFSFVH 266 (366)
T ss_pred ccc-----eeEeC-CCCEEEEeeEEeeccceec-c--ccceeeEccEEEEecCCCcEEEEcCC--C-CCCCCCceEEEEe
Confidence 432 22221 1245667777765444442 2 2455677776653 11 2 11111 0 0111234566777
Q ss_pred eEEECCcceEEEEeecCCCCceEEcEEEEeeeecc
Q 042768 270 TVFTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRN 304 (397)
Q Consensus 270 ~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~ 304 (397)
|++.+....+.+. +..+.-..+.|.+..|.+
T Consensus 267 C~itg~~~~~yLG----RpW~~ysrvVf~~t~m~~ 297 (366)
T PLN02665 267 CKVTGTGTGAYLG----RAWMSRPRVVFAYTEMSS 297 (366)
T ss_pred eEEecCCCceeec----CCCCCcceEEEEccccCC
Confidence 7776653223332 111223356666666654
No 42
>smart00656 Amb_all Amb_all domain.
Probab=98.23 E-value=7.4e-05 Score=65.94 Aligned_cols=119 Identities=20% Similarity=0.243 Sum_probs=83.6
Q ss_pred eEEEEccCCeEEEeeeEecCcc------eEEEEeceecEEEEeEEEECCC----CCCCCCcc-eee-ceeeEEEEecEEe
Q 042768 153 TLSFTNSNNIRINGLLSLNSQM------FHIVINGCKDVHVEGVTVIAPG----NSPNTDGI-HVQ-LSMNVKITNCTIK 220 (397)
Q Consensus 153 ~i~~~~~~nv~I~~v~i~~~~~------~~i~~~~~~~v~i~n~~i~~~~----~~~~~DGi-~~~-~s~nv~I~n~~i~ 220 (397)
.+.+..++||.|++++|.+... .++.+..+++|.|++|++.... .....||. ++. .+.+++|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 3667778899999999987543 4788888999999999999741 11124554 443 5789999999998
Q ss_pred cCCeeEEeCCCCe-------eEEEEeeEEeCCC--eEEEeeccccCCcCcEEEEEEEeeEEECCc-ceEEE
Q 042768 221 TGDDCIPIGPGTK-------NLWIERVTCGPGH--GISIGSLAKDLVEEGVQNVTVFKTVFTGTT-NGFRI 281 (397)
Q Consensus 221 ~~dD~i~i~~~~~-------ni~i~n~~~~~~~--gi~igs~~~~~~~~~v~ni~i~n~~~~~~~-~gi~i 281 (397)
..+-+.-++++.+ +|++.+|.+.+.. .-.+. .+ .+.+-|+.+.+.. +++..
T Consensus 113 ~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~~~R~P~~r--------~g--~~hv~NN~~~n~~~~~~~~ 173 (190)
T smart00656 113 NHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNLRQRAPRVR--------FG--YVHVYNNYYTGWTSYAIGG 173 (190)
T ss_pred cCCEEEEEccCCCccccccceEEEECcEEcCcccCCCccc--------CC--EEEEEeeEEeCcccEeEec
Confidence 7776777776432 6999999987532 22221 11 5889999998864 44443
No 43
>PLN02634 probable pectinesterase
Probab=98.19 E-value=0.001 Score=63.70 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ ... .--+++|-||+|.-. |.+... |. +++|+++|
T Consensus 67 df~TIQaAIda~-P~~~~~r~vI~Ik~GvY~Ek-V~Ip~~-k~-~ItL~G~g 114 (359)
T PLN02634 67 DFRSVQDAVDSV-PKNNTMSVTIKINAGFYREK-VVVPAT-KP-YITFQGAG 114 (359)
T ss_pred CccCHHHHHhhC-cccCCccEEEEEeCceEEEE-EEEcCC-CC-eEEEEecC
Confidence 577899999876 322 234789999999854 444211 24 88888876
No 44
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=98.15 E-value=0.00077 Score=67.76 Aligned_cols=203 Identities=10% Similarity=0.132 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHhh--cCCCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeeceEE
Q 042768 48 STQAFAKAWAAACA--STESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSI 125 (397)
Q Consensus 48 dt~aiq~Ai~~ac~--~~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I 125 (397)
|-..||+||+++.. ...--+++|.+|+|.- .+.++.. |. +++|.++|. +...|
T Consensus 236 ~f~TIq~AI~a~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-nItl~G~g~----------------------~~TiI 290 (529)
T PLN02170 236 THKTIGEALLSTSLESGGGRTVIYLKAGTYHE-NLNIPTK-QK-NVMLVGDGK----------------------GKTVI 290 (529)
T ss_pred chhhHHHHHHhcccccCCceEEEEEeCCeeEE-EEecCCC-Cc-eEEEEEcCC----------------------CCeEE
Confidence 47789999986411 1223578999999984 3444321 34 888888762 01111
Q ss_pred eccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCCCCC
Q 042768 126 IGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGNSPN 200 (397)
Q Consensus 126 ~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~~~~ 200 (397)
.+..-.+.+ |. .....-.....+++..+|++|.|... ..+-+ ..++...+.+|+|....|
T Consensus 291 t~~~~~~~g---~~---------T~~SaTv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQD--- 355 (529)
T PLN02170 291 VGSRSNRGG---WT---------TYQTATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQD--- 355 (529)
T ss_pred EeCCcCCCC---Cc---------cccceEEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCC---
Confidence 110000000 00 00112334556788888888887632 22322 246677777777776433
Q ss_pred CCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC-----Ce-EEEeeccccCCcCcEEEEEEEeeEEEC
Q 042768 201 TDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HG-ISIGSLAKDLVEEGVQNVTVFKTVFTG 274 (397)
Q Consensus 201 ~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~g-i~igs~~~~~~~~~v~ni~i~n~~~~~ 274 (397)
-+.... .+-..++|.|...=|-|- |.....++||.+..- .| |.- .++ .....-..+.|.||++.+
T Consensus 356 --TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avFq~C~I~~~~~~~~~g~ITA--q~R-~~~~~~~Gfvf~~C~it~ 426 (529)
T PLN02170 356 --SLYTHS-KRQFYRETDITGTVDFIF---GNSAVVFQSCNIAARKPSGDRNYVTA--QGR-SDPNQNTGISIHNCRITA 426 (529)
T ss_pred --cceeCC-CCEEEEeeEEccccceec---ccceEEEeccEEEEecCCCCceEEEe--cCC-CCCCCCceEEEEeeEEec
Confidence 222222 345667777765444432 234677777766431 12 211 111 011223467777777766
Q ss_pred CcceEEEEeecCCCCceEEcEEEEeeeecc
Q 042768 275 TTNGFRIKSWARPSNGFVQGVRFIDAVMRN 304 (397)
Q Consensus 275 ~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~ 304 (397)
.. ..++. +....-..+.|.+..|.+
T Consensus 427 ~~-~~yLG----RPW~~ysrvVf~~t~l~~ 451 (529)
T PLN02170 427 ES-MTYLG----RPWKEYSRTVVMQSFIDG 451 (529)
T ss_pred CC-ceeee----CCCCCCceEEEEecccCC
Confidence 43 12222 111223445666666654
No 45
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.14 E-value=1e-05 Score=72.09 Aligned_cols=94 Identities=28% Similarity=0.410 Sum_probs=62.8
Q ss_pred ceecEEEEeEEEECC-----------CCCCCCCcceeeceeeEEEEecEEecC---------CeeEEeCCCCeeEEEEee
Q 042768 181 GCKDVHVEGVTVIAP-----------GNSPNTDGIHVQLSMNVKITNCTIKTG---------DDCIPIGPGTKNLWIERV 240 (397)
Q Consensus 181 ~~~~v~i~n~~i~~~-----------~~~~~~DGi~~~~s~nv~I~n~~i~~~---------dD~i~i~~~~~ni~i~n~ 240 (397)
.++||.|+|++|+.. ......|+|.+..++||.|++|.+..+ |..+.++.++.+|+|++|
T Consensus 44 ~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~n 123 (200)
T PF00544_consen 44 GASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISNN 123 (200)
T ss_dssp SCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES-
T ss_pred CCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEch
Confidence 556666666666651 123467899999999999999999876 455788888999999999
Q ss_pred EEeCCC-eEEEeeccccCCcCcEEEEEEEeeEEECC
Q 042768 241 TCGPGH-GISIGSLAKDLVEEGVQNVTVFKTVFTGT 275 (397)
Q Consensus 241 ~~~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~~~ 275 (397)
.|.+.+ +..+|+......... .++++.++.+.++
T Consensus 124 ~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 124 IFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred hccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 998643 455666422222334 8999999999765
No 46
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=98.06 E-value=0.002 Score=65.79 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhhc---CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAS---TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~---~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .. ..--+|+|.+|+|.-. +.+... |. +++|.++|
T Consensus 252 ~f~TIq~Av~a~-p~~~~~~r~vI~vk~GvY~E~-V~i~~~-k~-~v~l~G~g 300 (553)
T PLN02708 252 CYKTVQEAVNAA-PDNNGDRKFVIRIKEGVYEET-VRVPLE-KK-NVVFLGDG 300 (553)
T ss_pred CccCHHHHHHhh-hhccCCccEEEEEeCceEEee-eeecCC-Cc-cEEEEecC
Confidence 467899999876 32 1234889999999853 444211 24 88888876
No 47
>PLN02682 pectinesterase family protein
Probab=98.05 E-value=0.002 Score=62.03 Aligned_cols=47 Identities=19% Similarity=0.131 Sum_probs=31.8
Q ss_pred chHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 47 DSTQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
-|-..||+||+++ ... .--+|+|.||+|.- .+.++.. |. +++|+++|
T Consensus 80 Gdf~TIQ~AIdav-P~~~~~r~vI~Ik~G~Y~E-kV~Ip~~-k~-~Itl~G~g 128 (369)
T PLN02682 80 GDFTTIQAAIDSL-PVINLVRVVIKVNAGTYRE-KVNIPPL-KA-YITLEGAG 128 (369)
T ss_pred CCccCHHHHHhhc-cccCCceEEEEEeCceeeE-EEEEecc-Cc-eEEEEecC
Confidence 3567899999876 322 23478999999984 3444211 25 89998876
No 48
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=98.05 E-value=0.00083 Score=68.63 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHhhcC-----CCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST-----ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~-----~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... +--+++|.+|+|.- .|.++.. |. +++|+++|. ..
T Consensus 261 ~f~TIq~Av~a~-p~~~~~~~~~~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~ 314 (566)
T PLN02713 261 NFTTINDAVAAA-PNNTDGSNGYFVIYVTAGVYEE-YVSIPKN-KK-YLMMIGDGI----------------------NQ 314 (566)
T ss_pred CCCCHHHHHHhh-hcccCCCCceEEEEEcCcEEEE-EEEecCC-Cc-eEEEEecCC----------------------CC
Confidence 467899999866 321 12478999999985 3444321 24 788888761 00
Q ss_pred eEEec--cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECC
Q 042768 123 VSIIG--GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAP 195 (397)
Q Consensus 123 v~I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~ 195 (397)
..|.+ -..+| |. ..+. .-.....+++..++++|.|... ..+-+ ..++...+.+|.|...
T Consensus 315 TiIt~~~~~~~g-----~~--------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~ 380 (566)
T PLN02713 315 TVITGNRSVVDG-----WT--------TFNS-ATFAVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAY 380 (566)
T ss_pred cEEEcCCcccCC-----Cc--------cccc-eeEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccC
Confidence 11111 00011 00 0011 1223345888888888888532 22322 2466777777777764
Q ss_pred CCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------Ce-EEEeeccccCCcCcEEEEEEE
Q 042768 196 GNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HG-ISIGSLAKDLVEEGVQNVTVF 268 (397)
Q Consensus 196 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~ 268 (397)
.| -+.... .+-.++||.|...=|-|- |...++++||.+... .+ |.-- ++ .....-..+.|.
T Consensus 381 QD-----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~~~~~~~~~~~~iTAq--~r-~~~~~~~G~vf~ 448 (566)
T PLN02713 381 QD-----TLYTHS-LRQFYRECDIYGTVDFIF---GNAAVVFQNCNLYPRLPMQGQFNTITAQ--GR-TDPNQNTGTSIQ 448 (566)
T ss_pred Cc-----ceEECC-CCEEEEeeEEecccceec---ccceEEEeccEEEEecCCCCCcceeeec--CC-CCCCCCCEEEEE
Confidence 33 233322 345677777765444442 235677777776431 12 2211 10 011223567777
Q ss_pred eeEEECC
Q 042768 269 KTVFTGT 275 (397)
Q Consensus 269 n~~~~~~ 275 (397)
||++...
T Consensus 449 ~c~i~~~ 455 (566)
T PLN02713 449 NCTIKAA 455 (566)
T ss_pred cCEEecC
Confidence 7777764
No 49
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=98.04 E-value=0.0013 Score=66.25 Aligned_cols=146 Identities=16% Similarity=0.208 Sum_probs=78.1
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
+-..||+||+++ ... .--+|+|.+|+|.- .+.++.. |. +++|+++| ++.- .. .+
T Consensus 229 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~itl~G~g~~~TiIt---------------~~--~~ 287 (530)
T PLN02933 229 NFTTINEAVSAA-PNSSETRFIIYIKGGEYFE-NVELPKK-KT-MIMFIGDGIGKTVIK---------------AN--RS 287 (530)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEcCceEEE-EEEecCC-Cc-eEEEEEcCCCCcEEE---------------eC--Cc
Confidence 467899999876 322 23478999999984 4555321 34 78888776 2211 00 00
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
..+| |. .. ...-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 288 ------~~dg-----~~--------T~-~SaT~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD 347 (530)
T PLN02933 288 ------RIDG-----WS--------TF-QTATVGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQD 347 (530)
T ss_pred ------cCCC-----Cc--------cc-cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEeccc
Confidence 0011 00 00 112334456778888888877532 223332 45667777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEe
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 243 (397)
-+.... .+-..++|.|...=|-| + |.....++||++.
T Consensus 348 -----TLy~~~-~Rqyy~~C~IeGtVDFI-F--G~a~avFq~C~i~ 384 (530)
T PLN02933 348 -----TLYVHS-AKQFYRECDIYGTIDFI-F--GNAAVVFQNCSLY 384 (530)
T ss_pred -----ccccCC-CceEEEeeEEeccccee-c--cCceEEEeccEEE
Confidence 222222 23466777776543433 1 2345666777664
No 50
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=98.02 E-value=0.00091 Score=65.30 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCCccchHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 42 GNGVTDSTQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 42 ~dg~tddt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
+||.. |-..||+||+++.... .--+|+|.+|+|.-. |.++.. |. +++|+++|
T Consensus 88 ~dGsG-df~TIQaAIdAa~~~~~~~r~~I~Ik~GvY~Ek-V~Ip~~-kp-~ItL~G~G 141 (422)
T PRK10531 88 GTQGV-THTTVQAAVDAAIAKRTNKRQYIAVMPGTYQGT-VYVPAA-AP-PITLYGTG 141 (422)
T ss_pred CCCCC-CccCHHHHHhhccccCCCceEEEEEeCceeEEE-EEeCCC-Cc-eEEEEecC
Confidence 44432 4678999998652221 224788999999854 455321 24 89999865
No 51
>PLN02916 pectinesterase family protein
Probab=98.00 E-value=0.0017 Score=64.94 Aligned_cols=46 Identities=26% Similarity=0.402 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhc-----CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAS-----TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~-----~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .. ..--+|+|.+|+|.- .+.++.. |. +++|.++|
T Consensus 198 ~f~TIq~AI~a~-P~~~~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g 248 (502)
T PLN02916 198 THRTINQALAAL-SRMGKSRTNRVIIYVKAGVYNE-KVEIDRH-MK-NVMFVGDG 248 (502)
T ss_pred CccCHHHHHHhc-ccccCCCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecC
Confidence 466899999876 31 112478999999984 4444321 24 78888876
No 52
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.002 Score=64.97 Aligned_cols=146 Identities=16% Similarity=0.123 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHHhhc--CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAS--TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~--~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ .. ...-+|+|.+|+|.- .+.++.. |. +++|.++| ++.- .. .+
T Consensus 217 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-~i~l~G~g~~~TiIt---------------~~--~~ 275 (520)
T PLN02201 217 NFTTIMDAVLAA-PDYSTKRYVIYIKKGVYLE-NVEIKKK-KW-NIMMVGDGIDATVIT---------------GN--RS 275 (520)
T ss_pred CccCHHHHHHhc-hhcCCCcEEEEEeCceeEE-EEEecCC-Cc-eEEEEecCCCCcEEE---------------eC--Cc
Confidence 577899999866 32 123578999999984 3454321 24 78888876 2111 00 00
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
..+|.+ .. ...-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 276 ------~~~g~~-------------T~-~SAT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QD 335 (520)
T PLN02201 276 ------FIDGWT-------------TF-RSATFAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQD 335 (520)
T ss_pred ------cCCCCc-------------cc-ceEEEEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCC
Confidence 001100 00 111233446777778888877632 223222 35666666776666332
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEe
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 243 (397)
-+.... .+-..++|.|...=|-|- |....+++||++.
T Consensus 336 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~ 372 (520)
T PLN02201 336 -----TLYTHT-MRQFYRECRITGTVDFIF---GDATAVFQNCQIL 372 (520)
T ss_pred -----eeEeCC-CCEEEEeeEEeecccEEe---cCceEEEEccEEE
Confidence 222222 234556666665444332 2245666666654
No 53
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=97.99 E-value=0.0014 Score=67.26 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=79.6
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+|+|.+|+|.-..+.+... |. +++|.++| ++.-. .++
T Consensus 283 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~E~~v~i~~~-k~-ni~l~G~g~~~TiIt~-----------------~~~ 342 (587)
T PLN02484 283 TFKTISEAIKKA-PEHSSRRTIIYVKAGRYEENNLKVGRK-KT-NLMFIGDGKGKTVITG-----------------GKS 342 (587)
T ss_pred CcccHHHHHHhc-cccCCCcEEEEEeCCEEEEEEEEECCC-Cc-eEEEEecCCCCeEEec-----------------CCc
Confidence 467899999866 321 2347899999998754555321 34 88888876 22110 000
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
+ .++.+ .....-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 343 ~------~~~~~--------------t~~saT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QD 402 (587)
T PLN02484 343 I------FDNLT--------------TFHTASFAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQD 402 (587)
T ss_pred c------cCCCc--------------ccceEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCc
Confidence 0 00000 00111233456777778888876532 223332 46677777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEe
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 243 (397)
-+.... .+-..+||.|...=|-|- |....+++||++.
T Consensus 403 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~i~ 439 (587)
T PLN02484 403 -----TLYVHS-NRQFFRECDIYGTVDFIF---GNAAVVLQNCSIY 439 (587)
T ss_pred -----ccccCC-CcEEEEecEEEeccceec---ccceeEEeccEEE
Confidence 222222 345667777765434331 2346677777664
No 54
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=97.96 E-value=0.00041 Score=65.51 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 47 DSTQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
-|-..||+||+++ .... .-+|+|.||+|.- .|.++.. |. +++|.+++
T Consensus 10 gdf~TIq~Aida~-p~~~~~~~~I~I~~G~Y~E-~V~i~~~-k~-~v~l~G~~ 58 (298)
T PF01095_consen 10 GDFTTIQAAIDAA-PDNNTSRYTIFIKPGTYRE-KVTIPRS-KP-NVTLIGEG 58 (298)
T ss_dssp SSBSSHHHHHHHS--SSSSS-EEEEE-SEEEE---EEE-ST-ST-TEEEEES-
T ss_pred CCccCHHHHHHhc-hhcCCceEEEEEeCeeEcc-ccEeccc-cc-eEEEEecC
Confidence 3566799999876 3222 3489999999984 3555421 24 78888775
No 55
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=97.94 E-value=0.0021 Score=65.36 Aligned_cols=175 Identities=13% Similarity=0.156 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ .... --+|+|.+|+|.- .+.+... |. +++|.++| ++.- +..+
T Consensus 247 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~~~TiIt-----------------~~~~ 305 (548)
T PLN02301 247 KYKTVKEAVASA-PDNSKTRYVIYVKKGTYKE-NVEIGKK-KK-NLMLVGDGMDSTIIT-----------------GSLN 305 (548)
T ss_pred CcccHHHHHHhh-hhcCCceEEEEEeCceeeE-EEEecCC-Cc-eEEEEecCCCCcEEE-----------------eCCc
Confidence 467899999876 3222 2478999999985 3444321 24 78888876 2110 0011
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~ 197 (397)
. .+|.+ .. ...-.....+++..++++|.|... ..+-+ ..++...+.+|.|....|
T Consensus 306 ~------~dg~~-------------T~-~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QD 365 (548)
T PLN02301 306 V------IDGST-------------TF-RSATVAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQD 365 (548)
T ss_pred c------CCCCC-------------ce-eeEEEEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccc
Confidence 0 01100 00 112333456778888888887542 22322 245677777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------Ce-EEEeeccccCCcCcEEEEEEEee
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HG-ISIGSLAKDLVEEGVQNVTVFKT 270 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n~ 270 (397)
-+.... .+-..+||.|...=|-|- |....+++||++..- .+ |.-- ++ .....-..+.|+||
T Consensus 366 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~c~i~~~~~~~~~~~~iTAq--gr-~~~~~~tG~vf~~c 433 (548)
T PLN02301 366 -----TLYAHS-LRQFYRDSYITGTVDFIF---GNAAVVFQNCKIVARKPMAGQKNMVTAQ--GR-TDPNQNTGISIQKC 433 (548)
T ss_pred -----cceecC-CcEEEEeeEEEeccceec---ccceeEEeccEEEEecCCCCCCceEEec--CC-CCCCCCCEEEEEee
Confidence 222222 344677777765444432 234667777766421 12 2211 11 01122346777777
Q ss_pred EEECC
Q 042768 271 VFTGT 275 (397)
Q Consensus 271 ~~~~~ 275 (397)
++...
T Consensus 434 ~i~~~ 438 (548)
T PLN02301 434 DIIAS 438 (548)
T ss_pred EEecC
Confidence 77664
No 56
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=97.93 E-value=0.0009 Score=68.04 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhhcCC-----CcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACASTE-----SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~-----g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
+-..||+||+++ .... --++||.+|+|.- .|.++.. |. +++|.++|. ..
T Consensus 234 ~f~TI~~Av~a~-p~~~~~~~~r~vI~vk~G~Y~E-~V~i~~~-k~-~i~l~G~g~----------------------~~ 287 (538)
T PLN03043 234 NFTTITDAIAAA-PNNSKPEDGYFVIYAREGYYEE-YVVVPKN-KK-NIMLIGDGI----------------------NK 287 (538)
T ss_pred CCcCHHHHHHhc-cccCCCCcceEEEEEcCeeeEE-EEEeCCC-CC-cEEEEecCC----------------------CC
Confidence 477899999765 3221 1378999999985 3444211 24 888888761 01
Q ss_pred eEEec--cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECC
Q 042768 123 VSIIG--GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAP 195 (397)
Q Consensus 123 v~I~G--G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~ 195 (397)
..|.+ -..+| |. .. ...-.....+++..++++|.|... ..+-+. .++...+.+|.|...
T Consensus 288 tiIt~~~~~~dg-----~~--------T~-~saT~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gy 353 (538)
T PLN03043 288 TIITGNHSVVDG-----WT--------TF-NSSTFAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGY 353 (538)
T ss_pred eEEEeCCccCCC-----Cc--------cc-cceEEEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEecc
Confidence 11111 00111 10 00 112334456888888888887542 233332 456677777777764
Q ss_pred CCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------Ce-EEEeeccccCCcCcEEEEEEE
Q 042768 196 GNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HG-ISIGSLAKDLVEEGVQNVTVF 268 (397)
Q Consensus 196 ~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~ 268 (397)
.| -+.... .+-..+||.|...=|-|- |....+++||++..- .+ |.--+ + .....-..+.|.
T Consensus 354 QD-----TLy~~~-~rq~y~~c~I~GtVDFIF---G~a~avfq~c~i~~r~~~~~~~~~iTA~~--r-~~~~~~tG~~~~ 421 (538)
T PLN03043 354 QD-----TLYVHS-LRQFYRECDIYGTVDFIF---GNAAAIFQNCNLYARKPMANQKNAFTAQG--R-TDPNQNTGISII 421 (538)
T ss_pred Cc-----ccccCC-CcEEEEeeEEeeccceEe---ecceeeeeccEEEEecCCCCCCceEEecC--C-CCCCCCceEEEE
Confidence 43 222222 345677777776444442 234677777776431 12 22211 1 011223467777
Q ss_pred eeEEECC
Q 042768 269 KTVFTGT 275 (397)
Q Consensus 269 n~~~~~~ 275 (397)
||++...
T Consensus 422 ~c~i~~~ 428 (538)
T PLN03043 422 NCTIEAA 428 (538)
T ss_pred ecEEecC
Confidence 7777764
No 57
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.92 E-value=0.00068 Score=61.09 Aligned_cols=123 Identities=24% Similarity=0.352 Sum_probs=82.3
Q ss_pred eEEEeeeEecCc------ceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeE
Q 042768 162 IRINGLLSLNSQ------MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNL 235 (397)
Q Consensus 162 v~I~~v~i~~~~------~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni 235 (397)
++|+++++.... ..++.+..++++.|+|+++.+ .+.+|+.+..+....+.+.... .++.+..++.++
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~----~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 166 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIEN----SGGDGIYFNTGTDYRIIGSTHV---SGIFIDNGSNNV 166 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-----SS-SEEEECCEECEEECCEEE---EEEEEESCEEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEc----cCccEEEEEccccCcEeecccc---eeeeeccceeEE
Confidence 347777775433 246888889999999999998 4567888875555555444332 133343345678
Q ss_pred EEEeeEEeCC-CeEEEeeccccCCcCcEEEEEEEeeEEEC-CcceEEEEeecCCCCceEEcEEEEeeeeccCcccE
Q 042768 236 WIERVTCGPG-HGISIGSLAKDLVEEGVQNVTVFKTVFTG-TTNGFRIKSWARPSNGFVQGVRFIDAVMRNVQFPI 309 (397)
Q Consensus 236 ~i~n~~~~~~-~gi~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i 309 (397)
.+.|+.+..+ .|+..++ ++++++||.+.+ ...|+.+.... ++.++|++++++..+|
T Consensus 167 ~~~~~~~~~~~~g~~~~~----------~~~~i~n~~~~~~~~~gi~i~~~~--------~~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 167 IVNNCIFNGGDNGIILGN----------NNITISNNTFEGNCGNGINIEGGS--------NIIISNNTIENCDDGI 224 (225)
T ss_dssp EEECEEEESSSCSEECEE----------EEEEEECEEEESSSSESEEEEECS--------EEEEEEEEEESSSEEE
T ss_pred EECCccccCCCceeEeec----------ceEEEEeEEECCccceeEEEECCe--------EEEEEeEEEECCccCc
Confidence 8888888765 4643332 589999999998 77899887642 2777777777766554
No 58
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=97.92 E-value=0.0026 Score=65.10 Aligned_cols=179 Identities=13% Similarity=0.115 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+|+|.+|+|.- .+.+... |. +++|.++| ++.- . ..+
T Consensus 270 ~f~TIq~Av~a~-p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g~~~TiIt---------------~--~~~ 328 (572)
T PLN02990 270 QYKTINEALNAV-PKANQKPFVIYIKQGVYNE-KVDVTKK-MT-HVTFIGDGPTKTKIT---------------G--SLN 328 (572)
T ss_pred CCcCHHHHHhhC-cccCCceEEEEEeCceeEE-EEEecCC-CC-cEEEEecCCCceEEE---------------e--ccc
Confidence 466799999866 321 22478999999985 3445321 34 88888886 2111 0 011
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
.. +|. |. ..+. .-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 329 ~~--~g~--------~~--------T~~s-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD 389 (572)
T PLN02990 329 FY--IGK--------VK--------TYLT-ATVAINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQD 389 (572)
T ss_pred cC--CCC--------cc--------ceee-eEEEEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccc
Confidence 10 000 00 0011 1223346788888888887643 233332 46677777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC---Ce--EEEeeccccCCcCcEEEEEEEeeEE
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---HG--ISIGSLAKDLVEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~~ 272 (397)
-+.... .+-..++|.|...=|-|- |....+++||++..- .| -.|-..++ .....-..+.|.||++
T Consensus 390 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~C~i 459 (572)
T PLN02990 390 -----TLYVHS-HRQFFRDCTVSGTVDFIF---GDAKVVLQNCNIVVRKPMKGQSCMITAQGR-SDVRESTGLVLQNCHI 459 (572)
T ss_pred -----hhccCC-CcEEEEeeEEecccceEc---cCceEEEEccEEEEecCCCCCceEEEeCCC-CCCCCCceEEEEeeEE
Confidence 222222 345667777776444442 234677777776421 11 11211111 0112234677777777
Q ss_pred ECCc
Q 042768 273 TGTT 276 (397)
Q Consensus 273 ~~~~ 276 (397)
....
T Consensus 460 t~~~ 463 (572)
T PLN02990 460 TGEP 463 (572)
T ss_pred ecCc
Confidence 7653
No 59
>PLN02671 pectinesterase
Probab=97.89 E-value=0.0034 Score=60.26 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAST-ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~-~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++-... .--+|+|.||+|.-. |.++.. |. +++|.++|
T Consensus 70 df~TIQ~AIdavP~~~~~~~~I~Ik~GvY~Ek-V~I~~~-k~-~Itl~G~g 117 (359)
T PLN02671 70 DSLTVQGAVDMVPDYNSQRVKIYILPGIYREK-VLVPKS-KP-YISFIGNE 117 (359)
T ss_pred CccCHHHHHHhchhcCCccEEEEEeCceEEEE-EEECCC-CC-eEEEEecC
Confidence 4778999998762211 234789999999843 444211 24 78887765
No 60
>PLN02432 putative pectinesterase
Probab=97.87 E-value=0.0023 Score=59.98 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .... --+|+|.+|+|.- .|.++.. |. +++|.+++
T Consensus 22 ~f~TIq~Aida~-p~~~~~~~~I~I~~G~Y~E-~V~ip~~-k~-~itl~G~~ 69 (293)
T PLN02432 22 DFRKIQDAIDAV-PSNNSQLVFIWVKPGIYRE-KVVVPAD-KP-FITLSGTQ 69 (293)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEeCceeEE-EEEEecc-Cc-eEEEEEcC
Confidence 477899999876 3222 2478899999974 3444211 24 78887765
No 61
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=97.86 E-value=0.003 Score=64.11 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAS-TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~-~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++-.. .+.-+|+|.+|+|.-. +.+... |. +++|.++|
T Consensus 243 ~f~TIq~Av~a~p~~~~~r~vI~Vk~GvY~E~-V~I~~~-k~-~i~l~G~g 290 (537)
T PLN02506 243 HYRTITEAINEAPNHSNRRYIIYVKKGVYKEN-IDMKKK-KT-NIMLVGDG 290 (537)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCeeeEE-EeccCC-Cc-eEEEEEcC
Confidence 467899999876221 1234889999999854 233211 24 78887775
No 62
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=97.84 E-value=0.0031 Score=64.55 Aligned_cols=147 Identities=15% Similarity=0.117 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHHhhc-CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeece
Q 042768 48 STQAFAKAWAAACAS-TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSGV 123 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~-~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~nv 123 (397)
+-..||+||+++-.. ...-+|+|.+|+|.- .+.+... |. +++|.++| ++.. +..+
T Consensus 269 ~f~tI~~Av~a~p~~~~~~~vI~ik~GvY~E-~V~i~~~-k~-~i~~~G~g~~~tiIt-----------------~~~~- 327 (565)
T PLN02468 269 KYKTISEALKDVPEKSEKRTIIYVKKGVYFE-NVRVEKK-KW-NVVMVGDGMSKTIVS-----------------GSLN- 327 (565)
T ss_pred CccCHHHHHHhchhcCCCcEEEEEeCCceEE-EEEecCC-CC-eEEEEecCCCCCEEE-----------------eCCc-
Confidence 467899999876221 223488999999985 4444321 24 78888876 2111 0000
Q ss_pred EEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCCC
Q 042768 124 SIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGNS 198 (397)
Q Consensus 124 ~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~~ 198 (397)
..+|.. - .+. .-.....+++..++++|.|... ..+-+ ..++...+.+|+|....|
T Consensus 328 -----~~dg~~--t-----------~~s-aT~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QD- 387 (565)
T PLN02468 328 -----FVDGTP--T-----------FST-ATFAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQD- 387 (565)
T ss_pred -----cCCCCC--c-----------cce-eeeeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccc-
Confidence 001110 0 011 1223345778888888877542 12222 246667777777776433
Q ss_pred CCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEe
Q 042768 199 PNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 199 ~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 243 (397)
-+.... .+-..+||.|...=|-|- |....+++||.+.
T Consensus 388 ----TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avfq~c~i~ 424 (565)
T PLN02468 388 ----TLYAHA-QRQFYRECNIYGTVDFIF---GNSAVVFQNCNIL 424 (565)
T ss_pred ----hhccCC-CceEEEeeEEecccceee---ccceEEEeccEEE
Confidence 222222 234567777765444332 2346677777664
No 63
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=97.82 E-value=0.0015 Score=66.48 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHhhcC-CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAST-ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~-~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++-... ..-+|+|.+|+|.- .+.++.. |. +++|.++|
T Consensus 241 ~f~TIq~Ai~a~p~~~~~r~vI~Ik~GvY~E-~V~i~~~-k~-~i~l~G~g 288 (541)
T PLN02416 241 NFSTITDAINFAPNNSNDRIIIYVREGVYEE-NVEIPIY-KT-NIVLIGDG 288 (541)
T ss_pred CccCHHHHHHhhhhcCCceEEEEEeCceeEE-EEecCCC-Cc-cEEEEecC
Confidence 4678999998762211 22467999999984 3444211 24 78888876
No 64
>PLN02304 probable pectinesterase
Probab=97.80 E-value=0.0046 Score=59.73 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHhhc--CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 48 STQAFAKAWAAACAS--TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~--~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
|-..||+||+++ .. ..--+|+|.+|+|.- .|.+... |. +++|+++|
T Consensus 86 df~TIQ~AIdav-P~~~~~r~vI~Ik~GvY~E-kV~Ip~~-K~-~Itl~G~g 133 (379)
T PLN02304 86 NFTTVQSAVDAV-GNFSQKRNVIWINSGIYYE-KVTVPKT-KP-NITFQGQG 133 (379)
T ss_pred CccCHHHHHhhC-cccCCCcEEEEEeCeEeEE-EEEECCC-CC-cEEEEecC
Confidence 467899999876 32 123468999999984 3444211 35 88888876
No 65
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=97.78 E-value=0.0034 Score=62.66 Aligned_cols=48 Identities=25% Similarity=0.287 Sum_probs=31.7
Q ss_pred chHHHHHHHHHHHhhc-CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 47 DSTQAFAKAWAAACAS-TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~ac~~-~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
-+-..||+||+++-.. ..--+++|.+|+|.- .+.++.. |. +++|.++|
T Consensus 207 G~f~TIq~AI~a~P~~~~~r~vI~Ik~GvY~E-~V~I~~~-k~-nItliGdg 255 (509)
T PLN02488 207 GKYNTVNAAIAAAPEHSRKRFVIYIKTGVYDE-IVRIGST-KP-NLTLIGDG 255 (509)
T ss_pred CCccCHHHHHHhchhcCCCcEEEEEeCCeeEE-EEEecCC-Cc-cEEEEecC
Confidence 3567899999876221 123478999999985 3444311 24 88888876
No 66
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=97.74 E-value=0.0042 Score=63.86 Aligned_cols=203 Identities=12% Similarity=0.100 Sum_probs=106.2
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+++|.+|+|.-. +.+... |. +++|+++| ++.-.. .+
T Consensus 296 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~G~g~~~TiIt~~-----------------~~ 354 (596)
T PLN02745 296 NFTTISDALAAM-PAKYEGRYVIYVKQGIYDET-VTVDKK-MV-NVTMYGDGSQKTIVTGN-----------------KN 354 (596)
T ss_pred CcccHHHHHHhc-cccCCceEEEEEeCCeeEEE-EEEcCC-Cc-eEEEEecCCCceEEEEC-----------------Cc
Confidence 467899999865 221 234789999999854 444321 34 88888876 221100 00
Q ss_pred eEEec-cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCC
Q 042768 123 VSIIG-GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPG 196 (397)
Q Consensus 123 v~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~ 196 (397)
. -.| ++. ...-.....+++..++++|.|... ..+-+ ..++...+.+|.|....
T Consensus 355 ~-~~g~~T~--------------------~saT~~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~Q 413 (596)
T PLN02745 355 F-ADGVRTF--------------------RTATFVALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQ 413 (596)
T ss_pred c-cCCCcce--------------------eeEEEEEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecc
Confidence 0 001 110 112233356788888888887532 22332 25677888888888744
Q ss_pred CCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------Ce-EEEeeccccCCcCcEEEEEEEe
Q 042768 197 NSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HG-ISIGSLAKDLVEEGVQNVTVFK 269 (397)
Q Consensus 197 ~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~g-i~igs~~~~~~~~~v~ni~i~n 269 (397)
|. +... ..+-.++||.|...=|-| + |....+++||.+... .| |.--+ + .....-..+.|.|
T Consensus 414 DT-----Ly~~-~~Rqyy~~C~I~GtVDFI-F--G~a~avf~~C~i~~~~~~~~~~~~iTAq~--r-~~~~~~~Gfvf~~ 481 (596)
T PLN02745 414 DT-----LYAQ-THRQFYRSCVITGTIDFI-F--GDAAAIFQNCLIFVRKPLPNQQNTVTAQG--R-VDKFETTGIVLQN 481 (596)
T ss_pred cc-----cccC-CCcEEEEeeEEEeeccEE-e--cceeEEEEecEEEEecCCCCCCceEEecC--C-CCCCCCceEEEEe
Confidence 32 2222 234677788887654443 2 235777777776531 12 22111 0 1112245677888
Q ss_pred eEEECCcceEE----EEeecCCCCceEEcEEEEeeeecc
Q 042768 270 TVFTGTTNGFR----IKSWARPSNGFVQGVRFIDAVMRN 304 (397)
Q Consensus 270 ~~~~~~~~gi~----i~s~~~~~~g~v~nI~~~ni~~~~ 304 (397)
|++........ .+.+-++.......+.|.+..|.+
T Consensus 482 c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~s~l~~ 520 (596)
T PLN02745 482 CRIAPDEDLKPVKTEVKSYLGRPWKEFSRTIVMESTIED 520 (596)
T ss_pred eEEecCccccccccccceeccCCCCCCccEEEEecccCC
Confidence 88776432110 111112222334556666666654
No 67
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=97.72 E-value=0.0032 Score=65.18 Aligned_cols=207 Identities=10% Similarity=0.048 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+|+|.+|+|.-. +.+... |. +++|.++| ++.-.. .+
T Consensus 261 ~f~TIq~Av~a~-P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-~i~l~Gdg~~~TiIt~~-----------------~~ 319 (670)
T PLN02217 261 QYKTINEALNFV-PKKKNTTFVVHIKAGIYKEY-VQVNRS-MT-HLVFIGDGPDKTVISGS-----------------KS 319 (670)
T ss_pred CccCHHHHHHhc-cccCCceEEEEEeCCceEEE-EEEcCC-CC-cEEEEecCCCCeEEEcC-----------------Cc
Confidence 467899999865 221 234789999999863 444321 24 77777776 221100 00
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
. -+|.+ ..+. .-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 320 ~------~dg~~-------------T~~S-AT~~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QD 379 (670)
T PLN02217 320 Y------KDGIT-------------TYKT-ATVAIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQD 379 (670)
T ss_pred c------CCCCC-------------ccce-EEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccc
Confidence 0 00000 0011 1233457888889999988643 234333 57889999999997543
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC-----CeEEEeeccccCCcCcEEEEEEEeeEE
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG-----HGISIGSLAKDLVEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~-----~gi~igs~~~~~~~~~v~ni~i~n~~~ 272 (397)
-+.... .+-.+++|.|...=|-|- |....+++||.+..- ..-.|-..++ .....-..+.|+||++
T Consensus 380 -----TLy~~~-~Rqyy~~C~I~GtVDFIF---G~a~avfq~C~I~~r~~~~~~~~~ITAqgr-~~~~~~tGfvf~~C~i 449 (670)
T PLN02217 380 -----TLYAHS-HRQFYRDCTISGTIDFLF---GDAAAVFQNCTLLVRKPLLNQACPITAHGR-KDPRESTGFVLQGCTI 449 (670)
T ss_pred -----hhccCC-CcEEEEeCEEEEeccEEe---cCceEEEEccEEEEccCCCCCceeEecCCC-CCCCCCceEEEEeeEE
Confidence 233332 456889999987555553 345788999988632 1112211111 1122346799999999
Q ss_pred ECCcceEE----EEeecCCCCceEEcEEEEeeeeccC
Q 042768 273 TGTTNGFR----IKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 273 ~~~~~gi~----i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
.....-+. .+.+-|+.......+.|.+..|.+.
T Consensus 450 ~~~~~~~~~~~~~~~yLGRPW~~ysrvVf~~t~l~~~ 486 (670)
T PLN02217 450 VGEPDYLAVKETSKAYLGRPWKEYSRTIIMNTFIPDF 486 (670)
T ss_pred ecCccccccccccceeeccCCCCCceEEEEecccCCe
Confidence 88632111 1111122233456777878777753
No 68
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=97.71 E-value=0.0029 Score=64.38 Aligned_cols=205 Identities=13% Similarity=0.103 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHHhhc----CCCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEee
Q 042768 48 STQAFAKAWAAACAS----TESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGV 120 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~----~~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~ 120 (397)
|-..||+||+++ .. ..--+|+|.+|+|.-. +.++.. |. +++|.++| ++.-..
T Consensus 234 ~f~TIq~Ai~a~-p~~~~~~~r~vI~Ik~G~Y~E~-V~i~~~-k~-~i~l~G~g~~~TvIt~~----------------- 292 (539)
T PLN02995 234 HFNTVQAAIDVA-GRRKVTSGRFVIYVKRGIYQEN-INVRLN-ND-DIMLVGDGMRSTIITGG----------------- 292 (539)
T ss_pred CccCHHHHHHhc-ccccCCCceEEEEEeCCEeEEE-EEecCC-CC-cEEEEEcCCCCeEEEeC-----------------
Confidence 577899999865 31 1235789999999864 444321 35 89998886 221100
Q ss_pred eceEEec-cEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEEC
Q 042768 121 SGVSIIG-GALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIA 194 (397)
Q Consensus 121 ~nv~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~ 194 (397)
.+. -.| ++ . ...-.....+++..++++|.|... ..+-+ ..++...+.+|+|..
T Consensus 293 ~~~-~~~~~T-------------------~-~SaT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G 351 (539)
T PLN02995 293 RSV-KGGYTT-------------------Y-NSATAGIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEG 351 (539)
T ss_pred Ccc-CCCCcc-------------------c-ceEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEec
Confidence 000 000 01 0 111223456778888888887642 23333 246777777777776
Q ss_pred CCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------CeEEEeeccccCCcCcEEEEEEE
Q 042768 195 PGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HGISIGSLAKDLVEEGVQNVTVF 268 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~ 268 (397)
..|. +.... .+-..+||.|...=|-|- |....+++||++..- .| .|-..++ .....-..+.|.
T Consensus 352 ~QDT-----Ly~~~-~Rqyy~~C~I~GtVDFIF---G~a~avf~~C~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~ 420 (539)
T PLN02995 352 YQDT-----LMVHS-QRQFYRECYIYGTVDFIF---GNAAAVFQNCIILPRRPLKGQAN-VITAQGR-ADPFQNTGISIH 420 (539)
T ss_pred ccch-----hccCC-CceEEEeeEEeeccceEe---cccceEEeccEEEEecCCCCCcc-eEecCCC-CCCCCCceEEEE
Confidence 4432 22222 345677777776444442 234677777776531 12 1111111 011223567777
Q ss_pred eeEEECCcceE----EEEeecCCCCceEEcEEEEeeeeccC
Q 042768 269 KTVFTGTTNGF----RIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 269 n~~~~~~~~gi----~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
||++.+..... ..+.+-++.......+.|.+..|.+.
T Consensus 421 ~c~i~~~~~~~~~~~~~~~yLGRPW~~ysrvv~~~t~~~~~ 461 (539)
T PLN02995 421 NSRILPAPDLKPVVRTVKTYMGRPWMKFSRTVVLQTYLDNV 461 (539)
T ss_pred eeEEecCCcccccccccceeccCCCCCCcceEEEeccccCc
Confidence 77777643210 01111121223344566666666543
No 69
>PLN02314 pectinesterase
Probab=97.70 E-value=0.0027 Score=65.30 Aligned_cols=205 Identities=12% Similarity=0.128 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+|+|.+|+|.- .+.+... |. +++|.++| ++.- . ..+
T Consensus 289 ~f~TI~~Av~a~-p~~~~~r~vI~ik~G~Y~E-~V~i~~~-k~-~i~l~G~g~~~tiIt---------------~--~~~ 347 (586)
T PLN02314 289 DVKTINEAVASI-PKKSKSRFVIYVKEGTYVE-NVLLDKS-KW-NVMIYGDGKDKTIIS---------------G--SLN 347 (586)
T ss_pred CccCHHHHHhhc-cccCCceEEEEEcCceEEE-EEEecCC-Cc-eEEEEecCCCCcEEE---------------e--cCC
Confidence 466799999865 321 22378999999985 3444311 24 78888876 2211 0 011
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~ 197 (397)
. .+|.. . .+. .-.....+++..++++|.|... ..+-+ ..++...+.+|.|....|
T Consensus 348 ~------~~g~~-t------------~~s-aT~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QD 407 (586)
T PLN02314 348 F------VDGTP-T------------FST-ATFAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQD 407 (586)
T ss_pred c------CCCCC-c------------cce-EEEEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccc
Confidence 0 01110 0 011 2233456778888888887632 22332 246677777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC------CeEEEeeccccCCcCcEEEEEEEeeE
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG------HGISIGSLAKDLVEEGVQNVTVFKTV 271 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~------~gi~igs~~~~~~~~~v~ni~i~n~~ 271 (397)
-+.... .+-..+||.|...=|-|- |....+++||.+..- .+ .|-..++ .+...-..+.|.||+
T Consensus 408 -----TLy~~~-~rq~y~~C~I~GtvDFIF---G~a~avf~~c~i~~~~~~~~~~~-~iTA~~r-~~~~~~~G~vf~~c~ 476 (586)
T PLN02314 408 -----TLYAHS-NRQFYRDCDITGTIDFIF---GNAAVVFQNCNIQPRQPLPNQFN-TITAQGK-KDPNQNTGISIQRCT 476 (586)
T ss_pred -----hheeCC-CCEEEEeeEEEeccceec---cCceeeeeccEEEEecCCCCCCc-eEecCCC-CCCCCCCEEEEEeeE
Confidence 232222 345677777775444432 235677777776531 12 1111111 011234567777777
Q ss_pred EECCcceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 272 FTGTTNGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 272 ~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
+..... +..+.+-++.......+.|.+..|.+.
T Consensus 477 i~~~~~-~~~~~yLGRpW~~ysr~v~~~s~i~~~ 509 (586)
T PLN02314 477 ISAFGN-LTAPTYLGRPWKDFSTTVIMQSYIGSF 509 (586)
T ss_pred EecCCc-ccccccccCCCCCCceEEEEecccCCc
Confidence 776532 111111111122233456666666543
No 70
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=97.68 E-value=0.0049 Score=63.42 Aligned_cols=146 Identities=17% Similarity=0.147 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHhhcC--CCcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACAST--ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~--~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ ... .--+|+|.+|+|.-. +.+... |. +++|.++| ++.- . ..+
T Consensus 286 ~f~TI~~Av~a~-p~~~~~r~vI~ik~GvY~E~-V~i~~~-k~-ni~l~Gdg~~~TiIt---------------~--~~~ 344 (587)
T PLN02313 286 DFTTVAAAVAAA-PEKSNKRFVIHIKAGVYREN-VEVTKK-KK-NIMFLGDGRGKTIIT---------------G--SRN 344 (587)
T ss_pred CCccHHHHHHhc-cccCCceEEEEEeCceeEEE-EEeCCC-CC-eEEEEecCCCccEEE---------------e--CCc
Confidence 567899999876 322 224889999999853 344211 24 78888876 2211 0 011
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
+ .+|.. ..+ ..-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 345 ~------~~g~~-------------t~~-sat~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QD 404 (587)
T PLN02313 345 V------VDGST-------------TFH-SATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQD 404 (587)
T ss_pred c------cCCCC-------------cee-eEEEEEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccc
Confidence 1 01100 001 11223345677777777777532 122222 45666666666665332
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEe
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~ 243 (397)
-+.... .+-..++|.|...=|-|- |....+++||.+.
T Consensus 405 -----TLy~~~-~rq~y~~c~I~GtvDFIF---G~a~avfq~c~i~ 441 (587)
T PLN02313 405 -----TLYVHS-NRQFFVKCHITGTVDFIF---GNAAAVLQDCDIN 441 (587)
T ss_pred -----hhccCC-CcEEEEeeEEeeccceec---cceeEEEEccEEE
Confidence 222222 234566666665444332 2346666666654
No 71
>PLN02197 pectinesterase
Probab=97.68 E-value=0.0032 Score=64.48 Aligned_cols=209 Identities=11% Similarity=0.040 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc---EEEeeccccccCCCcceEEEEeeec
Q 042768 48 STQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG---TLVAPADYRVLGQADNWLSFEGVSG 122 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G---~l~~~~~~~~~~~~~~~i~~~~~~n 122 (397)
|-..||+||+++ .... --+|+|.+|+|.-. +.++.. |. +++|+++| ++.- . ..+
T Consensus 286 ~f~TIq~Ai~a~-P~~~~~r~vI~Ik~GvY~E~-V~I~~~-k~-ni~l~G~g~~~TiIt---------------~--~~~ 344 (588)
T PLN02197 286 QFKTISQAVMAC-PDKNPGRCIIHIKAGIYNEQ-VTIPKK-KN-NIFMFGDGARKTVIS---------------Y--NRS 344 (588)
T ss_pred CcCCHHHHHHhc-cccCCceEEEEEeCceEEEE-EEccCC-Cc-eEEEEEcCCCCeEEE---------------e--ccc
Confidence 467899999876 2211 23689999999853 444321 24 88888876 2211 0 011
Q ss_pred eEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCC
Q 042768 123 VSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGN 197 (397)
Q Consensus 123 v~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~ 197 (397)
+...+ |.+ ..+. .-.....+++..++++|.|... ..+-+. .++...+.+|.|....|
T Consensus 345 ~~~~~----g~~-------------T~~S-aT~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQD 406 (588)
T PLN02197 345 VKLSP----GTT-------------TSLS-GTVQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQD 406 (588)
T ss_pred cccCC----CCc-------------ccce-eEEEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCc
Confidence 10000 000 0011 1233456788888888887532 233332 46677777777776433
Q ss_pred CCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCC---Ce--EEEeeccccCCcCcEEEEEEEeeEE
Q 042768 198 SPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPG---HG--ISIGSLAKDLVEEGVQNVTVFKTVF 272 (397)
Q Consensus 198 ~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~~ 272 (397)
-+.... .+-.++||.|...=|-| + |....+++||++... .| -.|-..++......-..+.|.||++
T Consensus 407 -----TLy~~~-~Rqyy~~C~I~GtVDFI-F--G~a~avfq~C~i~~r~~~~~~~~~iTAqgr~~~~~~~tG~vf~~C~i 477 (588)
T PLN02197 407 -----TLYVNN-GRQFYRNIVVSGTVDFI-F--GKSATVIQNSLIVVRKGSKGQYNTVTADGNEKGLAMKIGIVLQNCRI 477 (588)
T ss_pred -----ceEecC-CCEEEEeeEEEeccccc-c--cceeeeeecCEEEEecCCCCCceeEECCCCCCCCCCCcEEEEEccEE
Confidence 233222 34567777777544433 2 233477777766421 11 1111111100012234677777777
Q ss_pred ECCcce----EEEEeecCCCCceEEcEEEEeeeecc
Q 042768 273 TGTTNG----FRIKSWARPSNGFVQGVRFIDAVMRN 304 (397)
Q Consensus 273 ~~~~~g----i~i~s~~~~~~g~v~nI~~~ni~~~~ 304 (397)
.....- ...+.+-++.......+.|.+..|.+
T Consensus 478 t~~~~~~~~~~~~~~yLGRPW~~ysrvV~~~s~~~~ 513 (588)
T PLN02197 478 VPDKKLTAERLTVASYLGRPWKKFSTTVIISTEIGD 513 (588)
T ss_pred ecCCcccccccccccccCCCCCCCceEEEEecccCC
Confidence 764321 01112212122334556666666654
No 72
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.59 E-value=0.0015 Score=58.16 Aligned_cols=116 Identities=17% Similarity=0.198 Sum_probs=73.5
Q ss_pred EccCCeEEEeeeEecC---------------cceEEEEeceecEEEEeEEEECCCC---CCCCCc-ceee-ceeeEEEEe
Q 042768 157 TNSNNIRINGLLSLNS---------------QMFHIVINGCKDVHVEGVTVIAPGN---SPNTDG-IHVQ-LSMNVKITN 216 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~---------------~~~~i~~~~~~~v~i~n~~i~~~~~---~~~~DG-i~~~-~s~nv~I~n 216 (397)
.+++||.|++++|... ...++.+..+++|.|++|++..... ....|| +++. .+++|+|++
T Consensus 43 ~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~~vTiS~ 122 (200)
T PF00544_consen 43 KGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSDNVTISN 122 (200)
T ss_dssp ESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTEEEEEES
T ss_pred cCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCceEEEEc
Confidence 4889999999999882 3346888899999999999998521 112565 5665 578999999
Q ss_pred cEEecCCeeEEeCCC-------CeeEEEEeeEEeCCC--eEEEeeccccCCcCcEEEEEEEeeEEEC-CcceEEEE
Q 042768 217 CTIKTGDDCIPIGPG-------TKNLWIERVTCGPGH--GISIGSLAKDLVEEGVQNVTVFKTVFTG-TTNGFRIK 282 (397)
Q Consensus 217 ~~i~~~dD~i~i~~~-------~~ni~i~n~~~~~~~--gi~igs~~~~~~~~~v~ni~i~n~~~~~-~~~gi~i~ 282 (397)
|.|...+.+..+++. ..++++.+|.+.+.. .-.+ ....+.+-|+.+.+ ..+++...
T Consensus 123 n~f~~~~k~~l~G~~d~~~~~~~~~vT~hhN~f~~~~~R~P~~----------r~G~~Hv~NN~~~~~~~y~i~~~ 188 (200)
T PF00544_consen 123 NIFDNHNKTMLIGSSDSNSTDRGLRVTFHHNYFANTNSRNPRV----------RFGYVHVYNNYYYNWSGYAIGAR 188 (200)
T ss_dssp -EEEEEEETCEESSCTTCGGGTTEEEEEES-EEEEEEE-TTEE----------CSCEEEEES-EEEEECSESEEEE
T ss_pred hhccccccccccCCCCCccccCCceEEEEeEEECchhhCCCcc----------cccEEEEEEeeeECCCCEEEEcc
Confidence 999876555545442 368999999886421 1111 11247888887755 44555543
No 73
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.0032 Score=58.75 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=65.5
Q ss_pred EEEEeeeceEEeccEEecCCCcccccccCCCCCCCCceeEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEEC
Q 042768 115 LSFEGVSGVSIIGGALDAKGSSLWACKASGTNCPDGATTLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIA 194 (397)
Q Consensus 115 i~~~~~~nv~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~ 194 (397)
+.+.++.++.|.|-+|.|... .....|...|++.++++.+|.+-.+... ..+|....+++..+++.+++.
T Consensus 123 i~l~~s~d~~i~~n~i~G~~~---------~r~~~rGnGI~vyNa~~a~V~~ndisy~-rDgIy~~~S~~~~~~gnr~~~ 192 (408)
T COG3420 123 IYLHGSADVRIEGNTIQGLAD---------LRVAERGNGIYVYNAPGALVVGNDISYG-RDGIYSDTSQHNVFKGNRFRD 192 (408)
T ss_pred EEEeccCceEEEeeEEeeccc---------cchhhccCceEEEcCCCcEEEcCccccc-cceEEEcccccceecccchhh
Confidence 455566777777755554432 1122345567777777777776665322 235666666666666666664
Q ss_pred CCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeC
Q 042768 195 PGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGP 244 (397)
Q Consensus 195 ~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~ 244 (397)
..-|.|...+.+..|+++..+...-+.++-- +++++|.|+.-.+
T Consensus 193 -----~RygvHyM~t~~s~i~dn~s~~N~vG~ALMy-s~~l~V~~nrS~G 236 (408)
T COG3420 193 -----LRYGVHYMYTNDSRISDNSSRDNRVGYALMY-SDRLKVSDNRSSG 236 (408)
T ss_pred -----eeeeEEEEeccCcEeecccccCCcceEEEEE-eccEEEEcCcccC
Confidence 2345666666666666666655555555544 5566666665543
No 74
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length. The two N-terminal domains (this domain and the beta propeller) assemble in the compact 'cap' whereas the C-terminal domain forms an extended tail-like structure. The very N-terminal part of the 'cap' region (residues 246 to 312) holds the only alpha-helix of the protein and is presumably the residual part of the deleted N-terminal head-binding domain [].; PDB: 3JU4_A 3GVL_A 3GVK_B 3GVJ_A 1V0E_B 1V0F_E.
Probab=97.22 E-value=0.00048 Score=47.35 Aligned_cols=39 Identities=33% Similarity=0.384 Sum_probs=22.8
Q ss_pred ccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCcEEEeccee
Q 042768 40 AKGNGVTDSTQAFAKAWAAACASTESATLYVPKGRYLLGSVA 81 (397)
Q Consensus 40 A~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G~Y~~~~l~ 81 (397)
|+|||+||||+||.+||++. +.|..|=-..=||.+.++-
T Consensus 1 A~GDGvtdDt~A~~a~l~a~---~~g~~IDg~GlTykVs~lP 39 (67)
T PF12218_consen 1 AKGDGVTDDTAAITAALEAS---PVGRKIDGAGLTYKVSSLP 39 (67)
T ss_dssp ---CCCCE-HHHHHHHHHHS----TTS-EE-TT-EEEESS--
T ss_pred CCCccccCcHHHHHHHHhcc---CCCeEEecCCceEEEeeCc
Confidence 78999999999999999653 4454444444489998754
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=97.11 E-value=0.19 Score=48.56 Aligned_cols=51 Identities=20% Similarity=0.227 Sum_probs=32.2
Q ss_pred EeeccCccCCCccchHHHHHHHHHHHhhcCCCcEEEEcCc-EEEe-cceeecCCCCCcceEEEEcc-EEEe
Q 042768 34 NVLSFGAKGNGVTDSTQAFAKAWAAACASTESATLYVPKG-RYLL-GSVAFNGDCKSSDITFRIDG-TLVA 101 (397)
Q Consensus 34 ~v~dfGA~~dg~tddt~aiq~Ai~~ac~~~~g~~v~~p~G-~Y~~-~~l~l~~~~~s~~v~l~~~G-~l~~ 101 (397)
.|+.|=..++. | +.+||+.- ++|.+-|| +|.+ .++.++ + ..+|.+.| +++.
T Consensus 45 qvkt~~~~P~e--D----le~~I~~h------aKVaL~Pg~~Y~i~~~V~I~----~-~cYIiGnGA~V~v 98 (386)
T PF01696_consen 45 QVKTYWMEPGE--D----LEEAIRQH------AKVALRPGAVYVIRKPVNIR----S-CCYIIGNGATVRV 98 (386)
T ss_pred eEEEEEcCCCc--C----HHHHHHhc------CEEEeCCCCEEEEeeeEEec----c-eEEEECCCEEEEE
Confidence 45566666653 3 45555433 46777666 6987 478887 4 68888887 4443
No 76
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=96.79 E-value=0.057 Score=50.36 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHhhcCC--CcEEEEcCcEEEecceeecCCCCCcceEEEEcc
Q 042768 47 DSTQAFAKAWAAACASTE--SATLYVPKGRYLLGSVAFNGDCKSSDITFRIDG 97 (397)
Q Consensus 47 ddt~aiq~Ai~~ac~~~~--g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G 97 (397)
++...||+|+++|..+.+ -..+.+-+|.|.- .+.++.+ -. .++|++++
T Consensus 92 ~~f~TIQaAvdaA~~~~~~kr~yI~vk~GvY~e-~v~Vp~~-~~-~ITLyGed 141 (405)
T COG4677 92 VTFTTIQAAVDAAIIKRTNKRQYIAVKAGVYQE-TVYVPAA-PG-GITLYGED 141 (405)
T ss_pred cchHHHHHHHhhhcccCCCceEEEEEccceece-eEEecCC-CC-ceeEEecC
Confidence 677789999987733222 2355679999973 3444421 01 38888775
No 77
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=96.03 E-value=0.23 Score=44.27 Aligned_cols=56 Identities=16% Similarity=0.148 Sum_probs=31.3
Q ss_pred cEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec-CCeeEEeCCCCeeEEEEeeEEeCC
Q 042768 184 DVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT-GDDCIPIGPGTKNLWIERVTCGPG 245 (397)
Q Consensus 184 ~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~ni~i~n~~~~~~ 245 (397)
..+++|+.|-. +..||||..+ +-+|+|+.+.. +.|++.++.....++|.+.-..++
T Consensus 62 GatlkNvIiG~----~~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A 118 (215)
T PF03211_consen 62 GATLKNVIIGA----NQADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNA 118 (215)
T ss_dssp TEEEEEEEETS----S-TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEE
T ss_pred CCEEEEEEEcC----CCcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCC
Confidence 44555555543 3556777665 45666666665 667777766444555555554443
No 78
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=96.00 E-value=1.1 Score=43.58 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=37.5
Q ss_pred ecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec-CCeeEEeCCCCeeEEEEeeEEeCCC-eEEEeeccccCCcC
Q 042768 183 KDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT-GDDCIPIGPGTKNLWIERVTCGPGH-GISIGSLAKDLVEE 260 (397)
Q Consensus 183 ~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~-~dD~i~i~~~~~ni~i~n~~~~~~~-gi~igs~~~~~~~~ 260 (397)
.+|++.|+.+...+ ...|+-+.+..++++.+|.|.+ ...++... ....|++|+|.+.. |+.- .
T Consensus 121 ~~VtF~ni~F~~~~---~~~g~~f~~~t~~~~hgC~F~gf~g~cl~~~---~~~~VrGC~F~~C~~gi~~---------~ 185 (386)
T PF01696_consen 121 EGVTFVNIRFEGRD---TFSGVVFHANTNTLFHGCSFFGFHGTCLESW---AGGEVRGCTFYGCWKGIVS---------R 185 (386)
T ss_pred eeeEEEEEEEecCC---ccceeEEEecceEEEEeeEEecCcceeEEEc---CCcEEeeeEEEEEEEEeec---------C
Confidence 35555555555432 2334445555555555555554 22233222 24455555554332 3321 2
Q ss_pred cEEEEEEEeeEEECCcceE
Q 042768 261 GVQNVTVFKTVFTGTTNGF 279 (397)
Q Consensus 261 ~v~ni~i~n~~~~~~~~gi 279 (397)
+...+.|++|+|+...-|+
T Consensus 186 ~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 186 GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CcceEEeeheeeeheEEEE
Confidence 2334555555555554443
No 79
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=95.68 E-value=0.61 Score=45.88 Aligned_cols=167 Identities=15% Similarity=0.140 Sum_probs=69.4
Q ss_pred ccCCeEEEeeeEecCcce--EEEEe--------ceecEEEEeEEEECCC--CCCCCCcceeec------eeeEEEEecEE
Q 042768 158 NSNNIRINGLLSLNSQMF--HIVIN--------GCKDVHVEGVTVIAPG--NSPNTDGIHVQL------SMNVKITNCTI 219 (397)
Q Consensus 158 ~~~nv~I~~v~i~~~~~~--~i~~~--------~~~~v~i~n~~i~~~~--~~~~~DGi~~~~------s~nv~I~n~~i 219 (397)
+.++-+|+..+|.+-... .+.+. ...+-+|++..+...+ .+.....|.+.. ..+.+|+++.|
T Consensus 129 ~G~~NrvDhn~F~gK~~~G~~l~V~~~~~~~~~~~~~h~IdhNyF~~rp~~g~NggEtIRiG~S~~S~~~s~t~Ve~NlF 208 (425)
T PF14592_consen 129 YGKHNRVDHNYFQGKTNRGPTLAVRVILNGSQSIANYHRIDHNYFGPRPPKGGNGGETIRIGTSHSSMSDSNTTVENNLF 208 (425)
T ss_dssp ---S-EEES-EEE---SSS-SEEE--S--SS-------EEES-EEE-E---SSS---SEEE-SSTT-B-----EEES-EE
T ss_pred eccCceEEccEeeccccCCcEEEEEecccCccccccCceEEeccccccCCCCCCCceeEEEecccccccccceeeecchh
Confidence 445666677666542221 12211 1224456777666321 122334455532 36778888888
Q ss_pred ecCC---eeEEeCCCCeeEEEEeeEEeCCCe-EEEeeccccCCcCcEEEEEEEeeEEECC-----cceEEEEeecCCCCc
Q 042768 220 KTGD---DCIPIGPGTKNLWIERVTCGPGHG-ISIGSLAKDLVEEGVQNVTVFKTVFTGT-----TNGFRIKSWARPSNG 290 (397)
Q Consensus 220 ~~~d---D~i~i~~~~~ni~i~n~~~~~~~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~-----~~gi~i~s~~~~~~g 290 (397)
...| .-|++|| ..-+|++++|..+.| +.+-. |. +-+|+++.|.+. ..||||-. .+-
T Consensus 209 e~cdGE~EIISvKS--~~N~ir~Ntf~es~G~ltlRH-Gn--------~n~V~gN~FiGng~~~~tGGIRIi~----~~H 273 (425)
T PF14592_consen 209 ERCDGEVEIISVKS--SDNTIRNNTFRESQGSLTLRH-GN--------RNTVEGNVFIGNGVKEGTGGIRIIG----EGH 273 (425)
T ss_dssp EEE-SSSEEEEEES--BT-EEES-EEES-SSEEEEEE--S--------S-EEES-EEEE-SSSS-B--EEE-S----BS-
T ss_pred hhcCCceeEEEeec--CCceEeccEEEeccceEEEec-CC--------CceEeccEEecCCCcCCCCceEEec----CCc
Confidence 7643 4566665 556677777777765 55411 11 246677777753 24777753 345
Q ss_pred eEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCCCcceEEEeEEEEeE
Q 042768 291 FVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQVSGVKISDVIYQDI 339 (397)
Q Consensus 291 ~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~nI~~~ni 339 (397)
.|.|=+|++++-.....++.+......++......+....|.+-||-|.
T Consensus 274 ~I~nNY~~gl~g~~~~~~~~v~ng~p~s~ln~y~qv~nv~I~~NT~In~ 322 (425)
T PF14592_consen 274 TIYNNYFEGLTGTRFRGALAVMNGVPNSPLNRYDQVKNVLIANNTFINC 322 (425)
T ss_dssp EEES-EEEESSB-TTTTSEE-EEE--BSTTSTT---BSEEEES-EEES-
T ss_pred EEEcceeeccccceeecceeeccCCCCCCcccccccceeEEecceEEcc
Confidence 7888888888877666677655443332222223344555666666555
No 80
>PLN02480 Probable pectinesterase
Probab=94.77 E-value=1 Score=43.42 Aligned_cols=113 Identities=9% Similarity=0.068 Sum_probs=77.2
Q ss_pred EeceecEEEEeEEEECCCC-----CCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEee
Q 042768 179 INGCKDVHVEGVTVIAPGN-----SPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGS 252 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~-----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs 252 (397)
....++++++|++|+|... .....++-+. .++++.++||.|....|-+.... ..-.++||++++.-.+-+|.
T Consensus 128 tV~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~ 205 (343)
T PLN02480 128 TVEAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR 205 (343)
T ss_pred EEECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc
Confidence 3356899999999999632 1123455553 46899999999999888776543 56889999999877777765
Q ss_pred ccccCCcCcEEEEEEEeeEEECCc------ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 253 LAKDLVEEGVQNVTVFKTVFTGTT------NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 253 ~~~~~~~~~v~ni~i~n~~~~~~~------~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
. ...|+||++.... .| .|..... ....-....|.|+++...
T Consensus 206 g----------~a~fe~C~i~s~~~~~~~~~G-~ITA~~r-~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 G----------RSIFHNCEIFVIADRRVKIYG-SITAHNR-ESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred e----------eEEEEccEEEEecCCCCCCce-EEEcCCC-CCCCCCEEEEECCEEccc
Confidence 3 6889999998642 13 2333221 112223477999998763
No 81
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=94.10 E-value=0.067 Score=34.84 Aligned_cols=38 Identities=24% Similarity=0.176 Sum_probs=16.4
Q ss_pred cceeeceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeE
Q 042768 203 GIHVQLSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVT 241 (397)
Q Consensus 203 Gi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~ 241 (397)
||.++.+.+.+|+++.+....+||.+.. +++.++++++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~ 38 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNT 38 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCE
Confidence 3444444444444444444444444443 2333333333
No 82
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=93.90 E-value=4.5 Score=36.13 Aligned_cols=137 Identities=12% Similarity=0.017 Sum_probs=87.7
Q ss_pred eEEEEccCCeEEEeeeEecCcceEEEEeceecEEEEeEEEECCCCCCCCCcceeecee-eEEEEecEEecCCeeEEeCCC
Q 042768 153 TLSFTNSNNIRINGLLSLNSQMFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSM-NVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 153 ~i~~~~~~nv~I~~v~i~~~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~-nv~I~n~~i~~~dD~i~i~~~ 231 (397)
++.+. +..+|+++.|-.+...+||... +.+|+|++.+.. ..|.+.+.+.. .++|.+.-..+.+|=|-=..+
T Consensus 56 vF~le--~GatlkNvIiG~~~~dGIHC~G--~Ctl~NVwwedV----cEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng 127 (215)
T PF03211_consen 56 VFILE--DGATLKNVIIGANQADGIHCKG--SCTLENVWWEDV----CEDAATFKGDGGTVTIIGGGARNASDKVFQHNG 127 (215)
T ss_dssp SEEEE--TTEEEEEEEETSS-TT-EEEES--CEEEEEEEESS-----SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S
T ss_pred EEEec--CCCEEEEEEEcCCCcCceEEcC--CEEEEEEEeccc----ceeeeEEcCCCceEEEeCCcccCCCccEEEecC
Confidence 45554 6889999999877778999988 899999999984 56888888766 889999998887776655555
Q ss_pred CeeEEEEeeEEeCCCeEEEeeccccCCc-CcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEe
Q 042768 232 TKNLWIERVTCGPGHGISIGSLAKDLVE-EGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFID 299 (397)
Q Consensus 232 ~~ni~i~n~~~~~~~gi~igs~~~~~~~-~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~n 299 (397)
...+.|.|.+... .|--+-|-|.-... +.-+.+.+++........-+.|....+ +...++++.+..
T Consensus 128 ~Gtv~I~nF~a~d-~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~g-D~ati~~~~~~~ 194 (215)
T PF03211_consen 128 GGTVTIKNFYAED-FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYG-DTATISNSCIKG 194 (215)
T ss_dssp SEEEEEEEEEEEE-EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGT-TTEEEEEEEEEE
T ss_pred ceeEEEEeEEEcC-CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCC-CeEEEEEEEecC
Confidence 6778888865432 23112122111111 234567777665544333345666656 667777777665
No 83
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=93.86 E-value=0.086 Score=34.31 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=28.7
Q ss_pred EEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEec
Q 042768 176 HIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKT 221 (397)
Q Consensus 176 ~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~ 221 (397)
+|.+..+.+.+|++.++.. +.+||++..+++-+|+++.+..
T Consensus 1 GI~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred CEEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 3556666777777777776 5567888777777777777654
No 84
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=93.40 E-value=1.7 Score=44.16 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=18.2
Q ss_pred eeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEe
Q 042768 210 MNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIG 251 (397)
Q Consensus 210 ~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~ig 251 (397)
.+..+.+|.|....|-+.... ..-.++||++++.-.+-+|
T Consensus 298 D~~~fy~c~~~G~QDTLy~~~--~rqyy~~C~I~G~vDFIFG 337 (497)
T PLN02698 298 DHSVLYRCSIAGYQDTLYAAA--LRQFYRECDIYGTIDFIFG 337 (497)
T ss_pred CcEEEEcceeecccchheeCC--CcEEEEeeEEEeccceEec
Confidence 445555555555444444333 1234455555444444443
No 85
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=93.28 E-value=2.6 Score=38.58 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=12.9
Q ss_pred cEEEEEEEeeEEECCcceEEEEe
Q 042768 261 GVQNVTVFKTVFTGTTNGFRIKS 283 (397)
Q Consensus 261 ~v~ni~i~n~~~~~~~~gi~i~s 283 (397)
.+.+++|+++.+.....|+.+..
T Consensus 149 ~i~~~vI~GN~~~~~~~Gi~i~~ 171 (246)
T PF07602_consen 149 GINGNVISGNSIYFNKTGISISD 171 (246)
T ss_pred cccceEeecceEEecCcCeEEEc
Confidence 34555566666665555665543
No 86
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.67 E-value=4.8 Score=39.81 Aligned_cols=115 Identities=11% Similarity=0.080 Sum_probs=61.6
Q ss_pred eceecEEEEeEEEECCCC----CCCCCcceee-ceeeEEEEecEEecCCeeEEeCCC----------CeeEEEEeeEEeC
Q 042768 180 NGCKDVHVEGVTVIAPGN----SPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPG----------TKNLWIERVTCGP 244 (397)
Q Consensus 180 ~~~~~v~i~n~~i~~~~~----~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~----------~~ni~i~n~~~~~ 244 (397)
...+++..+|++|.|... ......+-+. ..+.+.+.+|.|....|-+..... ...-.++||++++
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 355666666666666432 1112222222 246777888888776676665320 1257777888777
Q ss_pred CCeEEEeeccccCCcCcEEEEEEEeeEEECCcc----eEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 245 GHGISIGSLAKDLVEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 245 ~~gi~igs~~~~~~~~~v~ni~i~n~~~~~~~~----gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
.-.+-+|.. ...|+||++..... .-.|... ......-....|.|+++...
T Consensus 283 ~VDFIFG~g----------~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~ 336 (422)
T PRK10531 283 DVDFVFGRG----------AVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNAS 336 (422)
T ss_pred cccEEccCc----------eEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecC
Confidence 666666552 46777777765321 1122221 10112223466777777663
No 87
>PLN02773 pectinesterase
Probab=91.70 E-value=9 Score=36.56 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=40.6
Q ss_pred EEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeC
Q 042768 155 SFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIG 229 (397)
Q Consensus 155 ~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 229 (397)
....++++..++++|.|... ..+-+ ..++.+.+.+|++....| -+.... .+-.++||.|...=|-|- +
T Consensus 97 v~v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QD-----TL~~~~-gr~yf~~c~IeG~VDFIF-G 169 (317)
T PLN02773 97 VIVEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQD-----TLYLHY-GKQYLRDCYIEGSVDFIF-G 169 (317)
T ss_pred EEEECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccc-----eeEeCC-CCEEEEeeEEeecccEEe-e
Confidence 34456777777777777632 12222 235566666666665332 222221 245566666655434332 2
Q ss_pred CCCeeEEEEeeEEe
Q 042768 230 PGTKNLWIERVTCG 243 (397)
Q Consensus 230 ~~~~ni~i~n~~~~ 243 (397)
.....+++|++.
T Consensus 170 --~g~a~Fe~c~i~ 181 (317)
T PLN02773 170 --NSTALLEHCHIH 181 (317)
T ss_pred --ccEEEEEeeEEE
Confidence 234566666664
No 88
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=89.24 E-value=17 Score=35.71 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=38.0
Q ss_pred eeeEEEEecEEec-CCeeEEeCCC-----------------------CeeEEEEeeEEeCCCeEEEeeccccCCcCcEEE
Q 042768 209 SMNVKITNCTIKT-GDDCIPIGPG-----------------------TKNLWIERVTCGPGHGISIGSLAKDLVEEGVQN 264 (397)
Q Consensus 209 s~nv~I~n~~i~~-~dD~i~i~~~-----------------------~~ni~i~n~~~~~~~gi~igs~~~~~~~~~v~n 264 (397)
+-|..++|..... --|++.+++. -.|-.|+|....++.|+.+|.-|+ .+.++|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~lGVG~~~DG~---~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGSLGVGIGMDGK---GGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES-SSESCEEECC---S-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheeccceeeeeecCC---CceEee
Confidence 4566777766443 5678888763 257778888888888877765432 345777
Q ss_pred EEEEeeEEECCcceEEEEe
Q 042768 265 VTVFKTVFTGTTNGFRIKS 283 (397)
Q Consensus 265 i~i~n~~~~~~~~gi~i~s 283 (397)
|++++| ...|+.++.
T Consensus 340 i~~~d~----~g~G~~~~~ 354 (549)
T PF09251_consen 340 ITVQDC----AGAGIFIRG 354 (549)
T ss_dssp EEEES-----SSESEEEEC
T ss_pred EEeecc----cCCceEEee
Confidence 777666 234556554
No 89
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=88.89 E-value=1.4 Score=40.63 Aligned_cols=77 Identities=27% Similarity=0.311 Sum_probs=40.6
Q ss_pred ceeeceeeEEEEecEEec--CC---------eeEEeCCCCeeEEEEeeEEeCCCeEEEeec---cccCCcCcEEEEEEEe
Q 042768 204 IHVQLSMNVKITNCTIKT--GD---------DCIPIGPGTKNLWIERVTCGPGHGISIGSL---AKDLVEEGVQNVTVFK 269 (397)
Q Consensus 204 i~~~~s~nv~I~n~~i~~--~d---------D~i~i~~~~~ni~i~n~~~~~~~gi~igs~---~~~~~~~~v~ni~i~n 269 (397)
+|++..++..|+|..-.+ .| .-+++. ++.|..|.|..+.++.|+-||.. |.|. .-.+|+...|
T Consensus 262 vhvengkhfvirnvkaknitpdfskkagidnatvaiy-gcdnfvidni~mvnsagmligygvikg~yl--sipqnfkln~ 338 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKNITPDFSKKAGIDNATVAIY-GCDNFVIDNIEMINSAGMLIGYGVIKGKYL--SIPQNFKLNN 338 (464)
T ss_pred EEecCCcEEEEEeeeccccCCCchhhcCCCcceEEEE-cccceEEeccccccccccEEEeeeeeccEe--cccccceece
Confidence 455555566666655443 11 112333 37788888888777766555442 2221 1134555555
Q ss_pred eEEECC-----cceEEEEe
Q 042768 270 TVFTGT-----TNGFRIKS 283 (397)
Q Consensus 270 ~~~~~~-----~~gi~i~s 283 (397)
+.+.++ -+|+.|.+
T Consensus 339 i~ldn~~l~yklrgiqiss 357 (464)
T PRK10123 339 IQLDNTHLAYKLRGIQISA 357 (464)
T ss_pred EeecccccceeeeeeEecc
Confidence 555554 35676654
No 90
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=87.52 E-value=6.4 Score=34.07 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=27.3
Q ss_pred cEEEEeEEEECCCCCCCCCcceeec---------eeeEEEEecEEec-CC-------eeEEeCCCCeeEEEEeeEEeCC
Q 042768 184 DVHVEGVTVIAPGNSPNTDGIHVQL---------SMNVKITNCTIKT-GD-------DCIPIGPGTKNLWIERVTCGPG 245 (397)
Q Consensus 184 ~v~i~n~~i~~~~~~~~~DGi~~~~---------s~nv~I~n~~i~~-~d-------D~i~i~~~~~ni~i~n~~~~~~ 245 (397)
+++|-|..|.+ +..-||.+.+ .++|.|+++.|.. |. .|| +.++-+|.+|+|+.|.+.
T Consensus 3 dIEIYnN~I~~----T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI-v~sGF~ntlIENNVfDG~ 76 (198)
T PF08480_consen 3 DIEIYNNTIYN----TYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI-VTSGFYNTLIENNVFDGV 76 (198)
T ss_pred ceEEecceeec----ccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE-EeccccccEEEeeeeccc
Confidence 45555555555 3334554432 2466666666653 21 222 122345555666655544
No 91
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=83.94 E-value=31 Score=32.69 Aligned_cols=79 Identities=13% Similarity=0.022 Sum_probs=39.9
Q ss_pred EEccCCeEEEeeeEecCcce----EEE-EeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCC
Q 042768 156 FTNSNNIRINGLLSLNSQMF----HIV-INGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGP 230 (397)
Q Consensus 156 ~~~~~nv~I~~v~i~~~~~~----~i~-~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 230 (397)
....+++.+++++|.|.... .+- ...++...+.+|.|.... |-+.... .+..++||.|...-|-|.=
T Consensus 83 ~v~a~~f~~~nit~~Nt~g~~~~qAvAl~~~~d~~~f~~c~~~g~Q-----DTL~~~~-~r~y~~~c~IeG~vDFIfG-- 154 (298)
T PF01095_consen 83 SVNADDFTAENITFENTAGPSGGQAVALRVSGDRAAFYNCRFLGYQ-----DTLYANG-GRQYFKNCYIEGNVDFIFG-- 154 (298)
T ss_dssp EE-STT-EEEEEEEEEHCSGSG----SEEET-TSEEEEEEEEE-ST-----T-EEE-S-SEEEEES-EEEESEEEEEE--
T ss_pred cccccceeeeeeEEecCCCCcccceeeeeecCCcEEEEEeEEcccc-----ceeeecc-ceeEEEeeEEEecCcEEEC--
Confidence 34578888888888875321 111 124566777777777633 3333332 3456677777665555432
Q ss_pred CCeeEEEEeeEEe
Q 042768 231 GTKNLWIERVTCG 243 (397)
Q Consensus 231 ~~~ni~i~n~~~~ 243 (397)
.....++||++.
T Consensus 155 -~~~a~f~~c~i~ 166 (298)
T PF01095_consen 155 -NGTAVFENCTIH 166 (298)
T ss_dssp -SSEEEEES-EEE
T ss_pred -CeeEEeeeeEEE
Confidence 235567777664
No 92
>PLN02671 pectinesterase
Probab=83.69 E-value=44 Score=32.51 Aligned_cols=133 Identities=13% Similarity=0.154 Sum_probs=65.0
Q ss_pred EEEEccCCeEEEeeeEecCcc--------eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCe
Q 042768 154 LSFTNSNNIRINGLLSLNSQM--------FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDD 224 (397)
Q Consensus 154 i~~~~~~nv~I~~v~i~~~~~--------~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD 224 (397)
-.....+++..++++|.|... ..+-+ ...+.+.+.+|+|....| -+... ..+-.++||.|...=|
T Consensus 148 Tv~v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QD-----TLy~~-~gR~yf~~CyIeG~VD 221 (359)
T PLN02671 148 SVTIESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQD-----TLLDE-TGSHYFYQCYIQGSVD 221 (359)
T ss_pred EEEEECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEecccc-----ccEeC-CCcEEEEecEEEEecc
Confidence 344556778888888877621 12222 245667777777776433 12211 1245666777765444
Q ss_pred eEEeCCCCeeEEEEeeEEeCC---Ce-EEEeeccccCCcCcEEEEEEEeeEEECCcceEEEE-eecCCCCceEEcEEEEe
Q 042768 225 CIPIGPGTKNLWIERVTCGPG---HG-ISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIK-SWARPSNGFVQGVRFID 299 (397)
Q Consensus 225 ~i~i~~~~~ni~i~n~~~~~~---~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~-s~~~~~~g~v~nI~~~n 299 (397)
-|- + .....++||++..- .| |.--+. .....-....|.||++.+.. .+++. .| +.-..+.|.|
T Consensus 222 FIF-G--~g~A~Fe~C~I~s~~~~~G~ITA~~r---~~~~~~~GfvF~~C~itg~g-~vyLGRPW-----~~yarvVf~~ 289 (359)
T PLN02671 222 FIF-G--NAKSLYQDCVIQSTAKRSGAIAAHHR---DSPTEDTGFSFVNCVINGTG-KIYLGRAW-----GNYSRTVYSN 289 (359)
T ss_pred EEe-c--ceeEEEeccEEEEecCCCeEEEeecc---CCCCCCccEEEEccEEccCc-cEEEeCCC-----CCCceEEEEe
Confidence 442 2 24566777766531 23 222111 01112345677777776532 22232 11 1224566666
Q ss_pred eeecc
Q 042768 300 AVMRN 304 (397)
Q Consensus 300 i~~~~ 304 (397)
..|.+
T Consensus 290 t~m~~ 294 (359)
T PLN02671 290 CFIAD 294 (359)
T ss_pred cccCC
Confidence 66654
No 93
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=83.59 E-value=32 Score=36.34 Aligned_cols=115 Identities=9% Similarity=0.062 Sum_probs=79.7
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|......+..+-+. .++...+.+|.|....|-+...+ ..-.+++|++++.-.+-+|..
T Consensus 333 ~v~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 406 (670)
T PLN02217 333 AIVGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLFGDA---- 406 (670)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEecCc----
Confidence 34578999999999997543344455543 35889999999999888877664 467999999998777777653
Q ss_pred CcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 258 VEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 407 ------~avfq~C~I~~r~~~~~~~~~ITAqgr~~~~~~tGfvf~~C~i~~~ 452 (670)
T PLN02217 407 ------AAVFQNCTLLVRKPLLNQACPITAHGRKDPRESTGFVLQGCTIVGE 452 (670)
T ss_pred ------eEEEEccEEEEccCCCCCceeEecCCCCCCCCCceEEEEeeEEecC
Confidence 5889999997531 12234332111112334588999999865
No 94
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=83.12 E-value=32 Score=35.66 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=80.0
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 340 ~~v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a--- 414 (565)
T PLN02468 340 FAVFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGNS--- 414 (565)
T ss_pred eeEECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeeccc---
Confidence 344568999999999997543334445443 45889999999999888877665 345799999998878877764
Q ss_pred CCcCcEEEEEEEeeEEECCcc----eEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 257 LVEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~~----gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-... .-.|..........-..+.|.|+++....
T Consensus 415 -------~avfq~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 461 (565)
T PLN02468 415 -------AVVFQNCNILPRRPMKGQQNTITAQGRTDPNQNTGISIQNCTILPLG 461 (565)
T ss_pred -------eEEEeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEccEEecCC
Confidence 68899999974311 12343321111223345889999998643
No 95
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=82.81 E-value=10 Score=32.91 Aligned_cols=64 Identities=25% Similarity=0.265 Sum_probs=33.7
Q ss_pred eeEEEEecEEec-CCeeEEeC--------CCCeeEEEEeeEEeCCC---eEE-EeeccccCCcCcEEEEEEEeeEEECCc
Q 042768 210 MNVKITNCTIKT-GDDCIPIG--------PGTKNLWIERVTCGPGH---GIS-IGSLAKDLVEEGVQNVTVFKTVFTGTT 276 (397)
Q Consensus 210 ~nv~I~n~~i~~-~dD~i~i~--------~~~~ni~i~n~~~~~~~---gi~-igs~~~~~~~~~v~ni~i~n~~~~~~~ 276 (397)
.+|.|.|+.|.+ .--||-+- ...+||+|.++.|+... .+. +|.. ...++.|..|||++|.+..
T Consensus 2 ~dIEIYnN~I~~T~g~GIWl~gy~~~ysk~~a~nVhIhhN~fY~tGtn~~~~wvGGI----v~sGF~ntlIENNVfDG~y 77 (198)
T PF08480_consen 2 DDIEIYNNTIYNTYGPGIWLFGYDGSYSKDSAKNVHIHHNIFYDTGTNPNIDWVGGI----VTSGFYNTLIENNVFDGVY 77 (198)
T ss_pred CceEEecceeecccCceEEEEecCCCCCccccccEEEECcEeecCCcCCCCceeeeE----EeccccccEEEeeeecccc
Confidence 356777777765 22344331 12457777777776421 111 1111 1234567777777777764
Q ss_pred c
Q 042768 277 N 277 (397)
Q Consensus 277 ~ 277 (397)
+
T Consensus 78 ~ 78 (198)
T PF08480_consen 78 H 78 (198)
T ss_pred c
Confidence 3
No 96
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=81.68 E-value=51 Score=34.48 Aligned_cols=116 Identities=6% Similarity=0.040 Sum_probs=79.3
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|.........+-+. .+....+.+|.|....|-+.... ..-.++||++++.-.+-+|..
T Consensus 368 ~v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 441 (596)
T PLN02745 368 VALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGDA---- 441 (596)
T ss_pred EEEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecce----
Confidence 34678999999999996532233444443 35889999999999888776654 467999999998877777763
Q ss_pred CcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 258 VEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 442 ------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~c~i~~~~ 488 (596)
T PLN02745 442 ------AAIFQNCLIFVRKPLPNQQNTVTAQGRVDKFETTGIVLQNCRIAPDE 488 (596)
T ss_pred ------eEEEEecEEEEecCCCCCCceEEecCCCCCCCCceEEEEeeEEecCc
Confidence 6899999997531 111343321111223356889999998643
No 97
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=80.55 E-value=67 Score=32.98 Aligned_cols=118 Identities=8% Similarity=0.093 Sum_probs=80.1
Q ss_pred EEEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccc
Q 042768 177 IVINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAK 255 (397)
Q Consensus 177 i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~ 255 (397)
......+++..+|++|+|.........+-+. .++...+.+|.|....|-+...+ ..-.+++|++++.-.+-+|..
T Consensus 307 Tv~v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a-- 382 (529)
T PLN02170 307 TVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGNS-- 382 (529)
T ss_pred EEEEEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceecccc--
Confidence 3445678899999999997543333444443 35889999999999888887665 356889999998878777663
Q ss_pred cCCcCcEEEEEEEeeEEECCcc---eEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 256 DLVEEGVQNVTVFKTVFTGTTN---GFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 256 ~~~~~~v~ni~i~n~~~~~~~~---gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+..... .-.|..........-..+.|.|+++....
T Consensus 383 --------~avFq~C~I~~~~~~~~~g~ITAq~R~~~~~~~Gfvf~~C~it~~~ 428 (529)
T PLN02170 383 --------AVVFQSCNIAARKPSGDRNYVTAQGRSDPNQNTGISIHNCRITAES 428 (529)
T ss_pred --------eEEEeccEEEEecCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 58899999975421 12343321111122345789999998643
No 98
>PLN02665 pectinesterase family protein
Probab=80.05 E-value=59 Score=31.76 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=79.6
Q ss_pred EEeceecEEEEeEEEECCCCC-----CCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEe
Q 042768 178 VINGCKDVHVEGVTVIAPGNS-----PNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIG 251 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~-----~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~ig 251 (397)
....++++..+|++|+|.... .....+-+. ..+...+.||.|....|-+.... ..-.++||++++.-.+-+|
T Consensus 149 v~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG 226 (366)
T PLN02665 149 LIVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFG 226 (366)
T ss_pred EEEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceecc
Confidence 345678999999999996421 111223332 35889999999999888876554 4688999999988777776
Q ss_pred eccccCCcCcEEEEEEEeeEEECCcce--EEEEeecCCCCceEEcEEEEeeeeccCcccEEE
Q 042768 252 SLAKDLVEEGVQNVTVFKTVFTGTTNG--FRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVI 311 (397)
Q Consensus 252 s~~~~~~~~~v~ni~i~n~~~~~~~~g--i~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i 311 (397)
.. ...|++|++.....+ -.|..........-....|.|+++......+++
T Consensus 227 ~g----------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~~~~yL 278 (366)
T PLN02665 227 SG----------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTGTGAYL 278 (366)
T ss_pred cc----------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCCCceee
Confidence 63 578999999865443 233332111111223467999999875433333
No 99
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=79.89 E-value=57 Score=33.68 Aligned_cols=116 Identities=9% Similarity=0.046 Sum_probs=79.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 308 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 381 (539)
T PLN02995 308 GIEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGNA---- 381 (539)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEeccc----
Confidence 34678999999999996543334445443 35889999999999888877665 356999999998878877763
Q ss_pred CcCcEEEEEEEeeEEECCcc----eEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 258 VEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~~----gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||++..... .-.|..........-..+.|.|+++....
T Consensus 382 ------~avf~~C~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 428 (539)
T PLN02995 382 ------AAVFQNCIILPRRPLKGQANVITAQGRADPFQNTGISIHNSRILPAP 428 (539)
T ss_pred ------ceEEeccEEEEecCCCCCcceEecCCCCCCCCCceEEEEeeEEecCC
Confidence 58899999875321 12343321111223356889999998743
No 100
>PLN02197 pectinesterase
Probab=79.84 E-value=47 Score=34.64 Aligned_cols=116 Identities=7% Similarity=0.095 Sum_probs=79.4
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 359 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 433 (588)
T PLN02197 359 VQVESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNN--GRQFYRNIVVSGTVDFIFGKS--- 433 (588)
T ss_pred EEEECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecC--CCEEEEeeEEEecccccccce---
Confidence 344678999999999996543334445443 35889999999999888887765 456999999998777777653
Q ss_pred CCcCcEEEEEEEeeEEECCc--ce--EEEEeecCCC--CceEEcEEEEeeeeccCc
Q 042768 257 LVEEGVQNVTVFKTVFTGTT--NG--FRIKSWARPS--NGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~--~g--i~i~s~~~~~--~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-.. .| -.|.. ++.. ...-..+.|.|+++....
T Consensus 434 -------~avfq~C~i~~r~~~~~~~~~iTA-qgr~~~~~~~tG~vf~~C~it~~~ 481 (588)
T PLN02197 434 -------ATVIQNSLIVVRKGSKGQYNTVTA-DGNEKGLAMKIGIVLQNCRIVPDK 481 (588)
T ss_pred -------eeeeecCEEEEecCCCCCceeEEC-CCCCCCCCCCcEEEEEccEEecCC
Confidence 4889999987421 11 13332 2211 123346889999997643
No 101
>PLN02304 probable pectinesterase
Probab=79.50 E-value=65 Score=31.55 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=10.3
Q ss_pred EccCCeEEEeeeEecC
Q 042768 157 TNSNNIRINGLLSLNS 172 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~ 172 (397)
...+++..++++|.|.
T Consensus 159 v~a~~F~a~nITf~Nt 174 (379)
T PLN02304 159 VFASNFIAKNISFMNV 174 (379)
T ss_pred EECCCeEEEeeEEEec
Confidence 3456677777777665
No 102
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=79.26 E-value=74 Score=32.50 Aligned_cols=140 Identities=6% Similarity=-0.059 Sum_probs=85.3
Q ss_pred EEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCC
Q 042768 156 FTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGP 230 (397)
Q Consensus 156 ~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~ 230 (397)
....+++..++++|.|... ..+-+ ..++...+.+|.|....| -+.... .+-.+++|.|...=|-|- +
T Consensus 266 ~v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QD-----TLy~~~-~rqyy~~C~I~G~vDFIF-G- 337 (497)
T PLN02698 266 TITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQD-----TLYAAA-LRQFYRECDIYGTIDFIF-G- 337 (497)
T ss_pred EEECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccc-----hheeCC-CcEEEEeeEEEeccceEe-c-
Confidence 4467899999999998754 23333 358899999999998543 333333 346889999997656553 3
Q ss_pred CCeeEEEEeeEEeCC---Ce--EEEeeccccCCcCcEEEEEEEeeEEECCcceEE----EEeecCCCCceEEcEEEEeee
Q 042768 231 GTKNLWIERVTCGPG---HG--ISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFR----IKSWARPSNGFVQGVRFIDAV 301 (397)
Q Consensus 231 ~~~ni~i~n~~~~~~---~g--i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~----i~s~~~~~~g~v~nI~~~ni~ 301 (397)
....+++||++..- .+ -.|-..++ .....-..+.|.||++........ .+.+-++.......+.|.+..
T Consensus 338 -~a~avf~~C~i~~~~~~~~~~~~iTAq~r-~~~~~~~G~vf~~c~i~~~~~~~~~~~~~~~yLGRPW~~ysr~vf~~s~ 415 (497)
T PLN02698 338 -NAAAVFQNCYLFLRRPHGKSYNVILANGR-SDPGQNTGFSLQSCRIRTSSDFSPVKHSYSSYLGRPWKKYSRAIVMESY 415 (497)
T ss_pred -ccceeecccEEEEecCCCCCceEEEecCC-CCCCCCceEEEEeeEEecCCcccccccccceeccCCCCCCceEEEEecc
Confidence 35789999998631 11 11211111 112234689999999998642111 111112222334567788888
Q ss_pred eccC
Q 042768 302 MRNV 305 (397)
Q Consensus 302 ~~~~ 305 (397)
|.+.
T Consensus 416 l~~~ 419 (497)
T PLN02698 416 IDDA 419 (497)
T ss_pred cCCc
Confidence 7754
No 103
>PLN02634 probable pectinesterase
Probab=76.32 E-value=72 Score=31.05 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=64.8
Q ss_pred EEccCCeEEEeeeEecCcc---------eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCee
Q 042768 156 FTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDC 225 (397)
Q Consensus 156 ~~~~~nv~I~~v~i~~~~~---------~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~ 225 (397)
....+++..++++|.|... ..+-+ ..++...+.+|.|....| -+... ..+-.++||.|...=|-
T Consensus 145 ~V~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QD-----TL~~~-~gR~yf~~CyIeG~VDF 218 (359)
T PLN02634 145 TVYANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQD-----TLCDD-AGRHYFKECYIEGSIDF 218 (359)
T ss_pred EEECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccc-----eeeeC-CCCEEEEeeEEcccccE
Confidence 3346778888888877631 12222 245667777777776433 22211 23456677777654444
Q ss_pred EEeCCCCeeEEEEeeEEeCC---Ce-EEEeeccccCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEcEEEEeee
Q 042768 226 IPIGPGTKNLWIERVTCGPG---HG-ISIGSLAKDLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQGVRFIDAV 301 (397)
Q Consensus 226 i~i~~~~~ni~i~n~~~~~~---~g-i~igs~~~~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~nI~~~ni~ 301 (397)
|- + .....++||++..- .| +.-- ++ .....-....|.||++.+.. -+++. +..+....+.|.+..
T Consensus 219 IF-G--~g~a~Fe~C~I~s~~~~~g~ITA~--~R-~~~~~~~GfvF~~C~vtg~g-~~yLG----RPW~~yarvVf~~t~ 287 (359)
T PLN02634 219 IF-G--NGRSMYKDCELHSIASRFGSIAAH--GR-TCPEEKTGFAFVGCRVTGTG-PLYVG----RAMGQYSRIVYAYTY 287 (359)
T ss_pred Ec-C--CceEEEeccEEEEecCCCcEEEeC--CC-CCCCCCcEEEEEcCEEcCCc-ceEec----CCCCCcceEEEEecc
Confidence 32 2 24556777766531 23 2211 10 01122345677777776542 12222 112223456666666
Q ss_pred ecc
Q 042768 302 MRN 304 (397)
Q Consensus 302 ~~~ 304 (397)
|.+
T Consensus 288 l~~ 290 (359)
T PLN02634 288 FDA 290 (359)
T ss_pred cCC
Confidence 654
No 104
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=76.14 E-value=75 Score=32.81 Aligned_cols=80 Identities=8% Similarity=0.025 Sum_probs=40.5
Q ss_pred EEEccCCeEEEeeeEecCcc----eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeC
Q 042768 155 SFTNSNNIRINGLLSLNSQM----FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIG 229 (397)
Q Consensus 155 ~~~~~~nv~I~~v~i~~~~~----~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~ 229 (397)
.....+++..++++|.|... ..+-+ ..++...+.+|.|....| -+.... .+-..+||.|...=|-| ++
T Consensus 314 ~~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QD-----TLy~~~-~rqyy~~C~I~GtVDFI-FG 386 (537)
T PLN02506 314 VAVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQD-----TLYAHS-LRQFYRECEIYGTIDFI-FG 386 (537)
T ss_pred EEEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccc-----cceecC-CceEEEeeEEecccceE-cc
Confidence 34456777777777776532 12222 235666666666665332 122221 23456666666543433 12
Q ss_pred CCCeeEEEEeeEEe
Q 042768 230 PGTKNLWIERVTCG 243 (397)
Q Consensus 230 ~~~~ni~i~n~~~~ 243 (397)
....+++||.+.
T Consensus 387 --~a~avfq~C~i~ 398 (537)
T PLN02506 387 --NGAAVLQNCKIY 398 (537)
T ss_pred --CceeEEeccEEE
Confidence 235666666654
No 105
>PLN02916 pectinesterase family protein
Probab=75.76 E-value=98 Score=31.60 Aligned_cols=81 Identities=9% Similarity=-0.001 Sum_probs=41.6
Q ss_pred EEEEccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEe
Q 042768 154 LSFTNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPI 228 (397)
Q Consensus 154 i~~~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i 228 (397)
-.....+++..++++|.|... ..+-+. .++...+.+|.|....| -+.... .+-..+||.|...=|-|-
T Consensus 271 T~~v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QD-----TLy~~~-~Rqyy~~C~I~GtVDFIF- 343 (502)
T PLN02916 271 TFGVSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQD-----TLFVHS-LRQFYRDCHIYGTIDFIF- 343 (502)
T ss_pred EEEEECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCc-----eeEeCC-CCEEEEecEEecccceec-
Confidence 334455677777777776532 122222 45666666666666332 222222 234566666665434331
Q ss_pred CCCCeeEEEEeeEEe
Q 042768 229 GPGTKNLWIERVTCG 243 (397)
Q Consensus 229 ~~~~~ni~i~n~~~~ 243 (397)
|....+++||.+.
T Consensus 344 --G~a~avFq~C~I~ 356 (502)
T PLN02916 344 --GDAAVVFQNCDIF 356 (502)
T ss_pred --cCceEEEecCEEE
Confidence 2345666666654
No 106
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=75.07 E-value=90 Score=30.86 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=34.0
Q ss_pred CeeEEEEeeEEeCC--CeEEEeeccc---------------cCCcCcEEEEEEEeeEEECCcceEEEEeecCCCCceEEc
Q 042768 232 TKNLWIERVTCGPG--HGISIGSLAK---------------DLVEEGVQNVTVFKTVFTGTTNGFRIKSWARPSNGFVQG 294 (397)
Q Consensus 232 ~~ni~i~n~~~~~~--~gi~igs~~~---------------~~~~~~v~ni~i~n~~~~~~~~gi~i~s~~~~~~g~v~n 294 (397)
+.|+.++|...-.. +|+-+|+-.. |+-..-..|=.|+|+...++ .|+.+ |.+..+++|+|
T Consensus 263 nYnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~--~~DG~~~yvsn 339 (549)
T PF09251_consen 263 NYNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGI--GMDGKGGYVSN 339 (549)
T ss_dssp EBS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESC--EEECCS-EEEE
T ss_pred eeeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeee--eecCCCceEee
Confidence 46888888876543 4677765421 11112245666777777776 44443 22336788888
Q ss_pred EEEEeeeec
Q 042768 295 VRFIDAVMR 303 (397)
Q Consensus 295 I~~~ni~~~ 303 (397)
|+.+++.-.
T Consensus 340 i~~~d~~g~ 348 (549)
T PF09251_consen 340 ITVQDCAGA 348 (549)
T ss_dssp EEEES-SSE
T ss_pred EEeecccCC
Confidence 888776543
No 107
>PLN02176 putative pectinesterase
Probab=74.95 E-value=83 Score=30.39 Aligned_cols=77 Identities=17% Similarity=0.066 Sum_probs=41.3
Q ss_pred ccCCeEEEeeeEecCcc----------eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeE
Q 042768 158 NSNNIRINGLLSLNSQM----------FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCI 226 (397)
Q Consensus 158 ~~~nv~I~~v~i~~~~~----------~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i 226 (397)
.++++..++++|.|... ..+-+ ...+...+.+|++....| -+... ..+-.++||.|...=|-|
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QD-----TLy~~-~gRqyf~~CyIeG~VDFI 193 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQD-----TLFDG-KGRHYYKRCVISGGIDFI 193 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccc-----eeEeC-CcCEEEEecEEEecccEE
Confidence 46777777777776531 12222 235666677777765332 12221 234566666666544444
Q ss_pred EeCCCCeeEEEEeeEEe
Q 042768 227 PIGPGTKNLWIERVTCG 243 (397)
Q Consensus 227 ~i~~~~~ni~i~n~~~~ 243 (397)
- + .....++||++.
T Consensus 194 F-G--~a~a~Fe~C~I~ 207 (340)
T PLN02176 194 F-G--YAQSIFEGCTLK 207 (340)
T ss_pred e-c--CceEEEeccEEE
Confidence 2 2 235666666664
No 108
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=74.94 E-value=85 Score=32.45 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=41.1
Q ss_pred EccCCeEEEeeeEecCcce----EEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCC
Q 042768 157 TNSNNIRINGLLSLNSQMF----HIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~~~~----~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 231 (397)
...+++..++++|.|.... .+-+ ..++...+.+|+|....|. +... +.+-..+||.|...=|-|- |
T Consensus 314 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDT-----Ly~~-~~Rqyy~~C~I~GtVDFIF---G 384 (541)
T PLN02416 314 VSGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDT-----LYVH-SFRQFYRECDIYGTIDYIF---G 384 (541)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccch-----hccC-CCceEEEeeEEeeccceee---c
Confidence 3467777777777765321 2222 2456666666666664332 2222 2344666666665434332 2
Q ss_pred CeeEEEEeeEEe
Q 042768 232 TKNLWIERVTCG 243 (397)
Q Consensus 232 ~~ni~i~n~~~~ 243 (397)
.....++||++.
T Consensus 385 ~a~avfq~c~i~ 396 (541)
T PLN02416 385 NAAVVFQACNIV 396 (541)
T ss_pred cceEEEeccEEE
Confidence 345666666664
No 109
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=74.32 E-value=1.1e+02 Score=31.46 Aligned_cols=116 Identities=7% Similarity=0.026 Sum_probs=78.9
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|.........+-+. .+....+.+|.|....|-+.... ..-.++||++++.-.+-+|..
T Consensus 288 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 362 (520)
T PLN02201 288 FAVSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGDA--- 362 (520)
T ss_pred EEEECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecCc---
Confidence 345678999999999997543334445443 35789999999999888887765 346889999998878777763
Q ss_pred CCcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 257 LVEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.... ..-.|..........-..+.|.|+++...
T Consensus 363 -------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 363 -------TAVFQNCQILAKKGLPNQKNTITAQGRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred -------eEEEEccEEEEecCCCCCCceEEecCCCCCCCCcEEEEEeeEEecC
Confidence 5889999987531 11233332111122334577999998753
No 110
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=74.00 E-value=91 Score=32.27 Aligned_cols=116 Identities=8% Similarity=0.050 Sum_probs=79.6
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+..++ ..-.++||++++.-.+-+|..
T Consensus 318 ~~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 392 (548)
T PLN02301 318 VAAVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGNA--- 392 (548)
T ss_pred EEEECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceecccc---
Confidence 344668899999999996543334444443 35889999999999888887765 345999999998878777763
Q ss_pred CCcCcEEEEEEEeeEEECCcc----eEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 257 LVEEGVQNVTVFKTVFTGTTN----GFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~~----gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.-... .-.|..........-..+.|.|+++...
T Consensus 393 -------~avfq~c~i~~~~~~~~~~~~iTAqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 393 -------AVVFQNCKIVARKPMAGQKNMVTAQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred -------eeEEeccEEEEecCCCCCCceEEecCCCCCCCCCEEEEEeeEEecC
Confidence 68899999975321 1133332111222334678999999764
No 111
>PLN02314 pectinesterase
Probab=73.89 E-value=90 Score=32.65 Aligned_cols=117 Identities=8% Similarity=0.052 Sum_probs=80.1
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 360 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~a--- 434 (586)
T PLN02314 360 FAAAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGNA--- 434 (586)
T ss_pred EEEEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccCc---
Confidence 344678999999999997543334445443 45789999999999888887765 346999999998878877763
Q ss_pred CCcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 257 LVEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 435 -------~avf~~c~i~~~~~~~~~~~~iTA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 435 -------AVVFQNCNIQPRQPLPNQFNTITAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred -------eeeeeccEEEEecCCCCCCceEecCCCCCCCCCCEEEEEeeEEecCC
Confidence 5899999997531 111333321111233345789999997654
No 112
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=73.48 E-value=92 Score=32.39 Aligned_cols=115 Identities=7% Similarity=0.032 Sum_probs=79.6
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|......+..+-+. .++...+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 336 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 409 (566)
T PLN02713 336 AVVGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGNA---- 409 (566)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceecccc----
Confidence 34568999999999997543344445443 45789999999999888887775 356999999998878877764
Q ss_pred CcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 258 VEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
.+.|+||.+.... ..-.|..........-..+.|.|+++...
T Consensus 410 ------~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 410 ------AVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ------eEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 6899999997531 11133332111122234578999999754
No 113
>PLN02682 pectinesterase family protein
Probab=72.72 E-value=99 Score=30.24 Aligned_cols=81 Identities=12% Similarity=0.048 Sum_probs=41.7
Q ss_pred EEEEccCCeEEEeeeEecCcc---------eEEEE-eceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCC
Q 042768 154 LSFTNSNNIRINGLLSLNSQM---------FHIVI-NGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGD 223 (397)
Q Consensus 154 i~~~~~~nv~I~~v~i~~~~~---------~~i~~-~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~d 223 (397)
-.....+++..++++|.|... ..+-+ ..++...+.+|+|....| -+... ..+-.++||.|...=
T Consensus 157 T~~v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QD-----TLy~~-~gRqyf~~C~IeG~V 230 (369)
T PLN02682 157 TFAVNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQD-----TLYDH-LGRHYFKDCYIEGSV 230 (369)
T ss_pred EEEEECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEecccc-----ceEEC-CCCEEEEeeEEcccc
Confidence 344556778888888877531 12222 235666666666665332 12111 124556666665543
Q ss_pred eeEEeCCCCeeEEEEeeEEe
Q 042768 224 DCIPIGPGTKNLWIERVTCG 243 (397)
Q Consensus 224 D~i~i~~~~~ni~i~n~~~~ 243 (397)
|-|- |.....+++|++.
T Consensus 231 DFIF---G~g~a~Fe~C~I~ 247 (369)
T PLN02682 231 DFIF---GNGLSLYEGCHLH 247 (369)
T ss_pred cEEe---cCceEEEEccEEE
Confidence 4332 1235666666654
No 114
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=72.54 E-value=1.2e+02 Score=31.54 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=36.4
Q ss_pred EccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCC
Q 042768 157 TNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 231 (397)
...+++..++++|.|... ..+-+. .++.+.+.||.|....| -+.... .+-.+++|.|...=|-|- |
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QD-----TLy~~~-~rq~y~~C~I~GtVDFIF---G 397 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQD-----TLYAHS-LRQFYKSCRIQGNVDFIF---G 397 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccc-----cceeCC-CceEEEeeEEeecCCEEe---c
Confidence 345667777777766532 122222 34555555666655322 122222 233455555554333331 1
Q ss_pred CeeEEEEeeEEe
Q 042768 232 TKNLWIERVTCG 243 (397)
Q Consensus 232 ~~ni~i~n~~~~ 243 (397)
....+++||.+.
T Consensus 398 ~a~avfq~c~i~ 409 (553)
T PLN02708 398 NSAAVFQDCAIL 409 (553)
T ss_pred CceEEEEccEEE
Confidence 235555555553
No 115
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=71.24 E-value=1.4e+02 Score=31.32 Aligned_cols=116 Identities=8% Similarity=0.052 Sum_probs=79.0
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+.+..+.||.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 355 ~~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a--- 429 (587)
T PLN02484 355 FAATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGNA--- 429 (587)
T ss_pred EEEEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceecccc---
Confidence 344678899999999996543334444443 35889999999999888877665 456899999998777777663
Q ss_pred CCcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 257 LVEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 430 -------~avfq~C~i~~~~~~~~~~~~ITAq~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 430 -------AVVLQNCSIYARKPMAQQKNTITAQNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred -------eeEEeccEEEEecCCCCCceEEEecCCCCCCCCcEEEEEeeEEecC
Confidence 5889999997531 11233332111122334578999999754
No 116
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=71.13 E-value=1.3e+02 Score=30.97 Aligned_cols=116 Identities=9% Similarity=0.099 Sum_probs=78.3
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|.........+-+. .+....+.+|.|....|-+...+ ..-.+++|++++.-.+-+|..
T Consensus 300 ~~v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~IeGtVDFIFG~a--- 374 (530)
T PLN02933 300 VGVKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHS--AKQFYRECDIYGTIDFIFGNA--- 374 (530)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCC--CceEEEeeEEecccceeccCc---
Confidence 345668999999999996543334445543 35889999999999888877665 345999999998878777763
Q ss_pred CCcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 257 LVEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 375 -------~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 375 -------AVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred -------eEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 5788999886432 11223322111112234577999998764
No 117
>PLN02432 putative pectinesterase
Probab=69.55 E-value=1e+02 Score=29.12 Aligned_cols=38 Identities=8% Similarity=-0.017 Sum_probs=19.0
Q ss_pred EccCCeEEEeeeEecCcc---eEEEE-eceecEEEEeEEEEC
Q 042768 157 TNSNNIRINGLLSLNSQM---FHIVI-NGCKDVHVEGVTVIA 194 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~~~---~~i~~-~~~~~v~i~n~~i~~ 194 (397)
...+++..++++|.|... ..+-+ ...+...+.+|.|..
T Consensus 91 v~a~~f~a~nlt~~Nt~g~~~QAvAl~v~gDr~~f~~c~~~G 132 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFGSSGKAVALRVAGDRAAFYGCRILS 132 (293)
T ss_pred EECCCeEEEeeEEEeCCCCCCceEEEEEcCCcEEEEcceEec
Confidence 345667777777766522 11111 134555555555554
No 118
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=67.79 E-value=1.1e+02 Score=31.94 Aligned_cols=116 Identities=7% Similarity=0.075 Sum_probs=79.5
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.+++|++++.-.+-+|..
T Consensus 358 ~v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~a---- 431 (587)
T PLN02313 358 AAVGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGNA---- 431 (587)
T ss_pred EEECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccce----
Confidence 44668999999999997543334444443 45889999999999888887765 345999999998877777653
Q ss_pred CcCcEEEEEEEeeEEECCcc--e--EEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 258 VEEGVQNVTVFKTVFTGTTN--G--FRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~~--g--i~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-... | -.|..........-..+.|.|+++....
T Consensus 432 ------~avfq~c~i~~r~~~~~~~~~iTAqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 432 ------AAVLQDCDINARRPNSGQKNMVTAQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ------eEEEEccEEEEecCCCCCcceEEecCCCCCCCCceEEEEecEEecCC
Confidence 68999999975321 1 1333321112223345889999997643
No 119
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=67.58 E-value=1.2e+02 Score=31.49 Aligned_cols=116 Identities=7% Similarity=0.061 Sum_probs=80.2
Q ss_pred EEeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeecccc
Q 042768 178 VINGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKD 256 (397)
Q Consensus 178 ~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~ 256 (397)
.....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.++||++++.-.+-+|..
T Consensus 308 ~~v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~a--- 382 (538)
T PLN03043 308 FAVSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGNA--- 382 (538)
T ss_pred EEEECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeecc---
Confidence 344668999999999997543344555553 35789999999999888877665 456999999998878878764
Q ss_pred CCcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccC
Q 042768 257 LVEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNV 305 (397)
Q Consensus 257 ~~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~ 305 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++...
T Consensus 383 -------~avfq~c~i~~r~~~~~~~~~iTA~~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 383 -------AAIFQNCNLYARKPMANQKNAFTAQGRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred -------eeeeeccEEEEecCCCCCCceEEecCCCCCCCCceEEEEecEEecC
Confidence 5899999997531 11133332111112234588999999764
No 120
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=65.13 E-value=1.7e+02 Score=29.96 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=39.0
Q ss_pred EccCCeEEEeeeEecCcc----eEEEEe-ceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEecEEecCCeeEEeCCC
Q 042768 157 TNSNNIRINGLLSLNSQM----FHIVIN-GCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITNCTIKTGDDCIPIGPG 231 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~~~----~~i~~~-~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~ 231 (397)
...+++..++++|.|... ..+-+. .++...+.+|.|....| -+... +.+-..++|.|...=|-|- |
T Consensus 281 v~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQD-----TLy~~-~~RqyyrdC~I~GtVDFIF---G 351 (509)
T PLN02488 281 SNGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQD-----ALYPH-RDRQFYRECFITGTVDFIC---G 351 (509)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCc-----ceeeC-CCCEEEEeeEEeeccceEe---c
Confidence 345667777777766432 122222 35566666666665332 22222 2344566666655434332 2
Q ss_pred CeeEEEEeeEEe
Q 042768 232 TKNLWIERVTCG 243 (397)
Q Consensus 232 ~~ni~i~n~~~~ 243 (397)
....+++||.+.
T Consensus 352 ~a~avFq~C~I~ 363 (509)
T PLN02488 352 NAAAVFQFCQIV 363 (509)
T ss_pred ceEEEEEccEEE
Confidence 345666666654
No 121
>COG4704 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.89 E-value=15 Score=29.99 Aligned_cols=31 Identities=19% Similarity=0.470 Sum_probs=19.5
Q ss_pred cchHHHHHHHHHHHhhcCCCcEE-----EEcCcEEEecce
Q 042768 46 TDSTQAFAKAWAAACASTESATL-----YVPKGRYLLGSV 80 (397)
Q Consensus 46 tddt~aiq~Ai~~ac~~~~g~~v-----~~p~G~Y~~~~l 80 (397)
.+++..||+| |.+..|.-| -+|||+|-+..+
T Consensus 59 ~~~~~~f~ra----ctsit~dpv~~~f~~Lk~G~YAvaa~ 94 (151)
T COG4704 59 MSDPSRFQRA----CTSITGDPVSKSFYGLKPGKYAVAAF 94 (151)
T ss_pred CCCchHHhhh----cccccCCchhheeecCCCccEEEEEE
Confidence 4677888887 333333322 369999988643
No 122
>PLN02497 probable pectinesterase
Probab=63.65 E-value=1.4e+02 Score=28.67 Aligned_cols=167 Identities=11% Similarity=-0.005 Sum_probs=97.9
Q ss_pred eceecEEEEeEEEECCCCCC-------CCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEe
Q 042768 180 NGCKDVHVEGVTVIAPGNSP-------NTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIG 251 (397)
Q Consensus 180 ~~~~~v~i~n~~i~~~~~~~-------~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~ig 251 (397)
...+++..+|++|.|....+ ....+-+. ..++..+.||.|....|-+.... ..-.++||++++.-.+-+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 45679999999999964311 11233332 35889999999999888776543 4679999999987777776
Q ss_pred eccccCCcCcEEEEEEEeeEEECCcc------eEEEEeecCCCCceEEcEEEEeeeeccCcccEEEEeecCCCCCCCCCC
Q 042768 252 SLAKDLVEEGVQNVTVFKTVFTGTTN------GFRIKSWARPSNGFVQGVRFIDAVMRNVQFPIVIDQNYCPHNLNCPGQ 325 (397)
Q Consensus 252 s~~~~~~~~~v~ni~i~n~~~~~~~~------gi~i~s~~~~~~g~v~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~ 325 (397)
.. ...|+||++..... .-.|..........-....|.|+++.... ...+.--|.
T Consensus 190 ~g----------~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~g-~~yLGRPW~--------- 249 (331)
T PLN02497 190 SG----------QSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGTG-SAYLGRPWR--------- 249 (331)
T ss_pred Cc----------eEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccCC-CEEEeCCCC---------
Confidence 53 58899999975321 12333321111222345679999998632 333332222
Q ss_pred CcceEEEeEEEEeEEEeecCCceE-EEecCCCCceecEEEEeEEEEeCC
Q 042768 326 VSGVKISDVIYQDIRGTSATPIAI-KFDCSPKYPCQGIRLQNINLRHLK 373 (397)
Q Consensus 326 ~~~~~i~nI~~~ni~~~~~~~~~~-~i~~~~~~~i~~i~~~nv~i~~~~ 373 (397)
+...+.|.+..+...-.+.. .-... ..+-+.+.|-...-..+|
T Consensus 250 ----~ysrvvf~~t~m~~~I~p~GW~~W~~-~~~~~t~~f~Ey~n~GpG 293 (331)
T PLN02497 250 ----GYSRVLFYNSNLTDVVVPEGWDAWNF-VGHENQLTFAEHGCFGSG 293 (331)
T ss_pred ----CCceEEEEecccCCeEccCCcCCcCC-CCCCCceEEEEEccccCC
Confidence 24567777776543211110 00111 122356777666655555
No 123
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=55.72 E-value=2.6e+02 Score=29.16 Aligned_cols=116 Identities=9% Similarity=0.095 Sum_probs=79.4
Q ss_pred EeceecEEEEeEEEECCCCCCCCCcceee-ceeeEEEEecEEecCCeeEEeCCCCeeEEEEeeEEeCCCeEEEeeccccC
Q 042768 179 INGCKDVHVEGVTVIAPGNSPNTDGIHVQ-LSMNVKITNCTIKTGDDCIPIGPGTKNLWIERVTCGPGHGISIGSLAKDL 257 (397)
Q Consensus 179 ~~~~~~v~i~n~~i~~~~~~~~~DGi~~~-~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~igs~~~~~ 257 (397)
....+++..+|++|+|......+..+-+. .+....+.+|.|....|-+...+ ..-.+++|++++.-.+-+|..
T Consensus 343 ~v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~a---- 416 (572)
T PLN02990 343 AINGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGDA---- 416 (572)
T ss_pred EEEcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccCc----
Confidence 34568999999999996543334445443 45889999999999888877665 456889999998878877663
Q ss_pred CcCcEEEEEEEeeEEECCc----ceEEEEeecCCCCceEEcEEEEeeeeccCc
Q 042768 258 VEEGVQNVTVFKTVFTGTT----NGFRIKSWARPSNGFVQGVRFIDAVMRNVQ 306 (397)
Q Consensus 258 ~~~~v~ni~i~n~~~~~~~----~gi~i~s~~~~~~g~v~nI~~~ni~~~~~~ 306 (397)
...|+||.+.-.. ..-.|..........-..+.|.|+++....
T Consensus 417 ------~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 417 ------KVVLQNCNIVVRKPMKGQSCMITAQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ------eEEEEccEEEEecCCCCCceEEEeCCCCCCCCCceEEEEeeEEecCc
Confidence 5889999997431 112343321111122345889999997754
No 124
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=54.06 E-value=13 Score=19.90 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=11.5
Q ss_pred EEEEEeeEEECCcc-eEEEE
Q 042768 264 NVTVFKTVFTGTTN-GFRIK 282 (397)
Q Consensus 264 ni~i~n~~~~~~~~-gi~i~ 282 (397)
+++|+++++.+... |+.+.
T Consensus 3 ~~~i~~n~i~~~~~~Gi~i~ 22 (26)
T smart00710 3 NVTIENNTIRNNGGDGIYIG 22 (26)
T ss_pred CEEEECCEEEeCCCCcEEEe
Confidence 46666666666554 65554
No 125
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=53.11 E-value=74 Score=25.53 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=45.6
Q ss_pred EccCCeEEEeeeEecCc---ceEEEEeceecEEEEeEEEECCCCCCCCCcceeeceeeEEEEe-cEEecCCeeEE
Q 042768 157 TNSNNIRINGLLSLNSQ---MFHIVINGCKDVHVEGVTVIAPGNSPNTDGIHVQLSMNVKITN-CTIKTGDDCIP 227 (397)
Q Consensus 157 ~~~~nv~I~~v~i~~~~---~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n-~~i~~~dD~i~ 227 (397)
..+.+..+.+-.+.+.. .+++.+..+.+..+.+..+. .. .. .+|++++.+....+.+ .......||+.
T Consensus 73 ~~~~~~~i~~N~~~~~~~~~~~Gi~~~~~~~~~~~~N~i~-~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~Gi~ 144 (146)
T smart00722 73 QNTGKNLIIDNVTINGTEGSGAGIVVTAGSEGLFIGNRII-TN-ND-GDGNYLSDSSGGDLIGNRIYDNGRDGIA 144 (146)
T ss_pred cCccccEEEcceecCCCccceEEEEEECCccceEecCeEE-ee-cC-CCCEEEeCCCCcEEEcceeEecCCCcEe
Confidence 56677777777777763 78888887766666666665 21 12 6888888777777777 44444555554
No 126
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=43.14 E-value=31 Score=31.96 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhcCCCcEEEEcCcE----EEecc
Q 042768 51 AFAKAWAAACASTESATLYVPKGR----YLLGS 79 (397)
Q Consensus 51 aiq~Ai~~ac~~~~g~~v~~p~G~----Y~~~~ 79 (397)
-|-+||.+- .+...|++|+|- |.+.+
T Consensus 38 ~iasaI~dG---Vg~p~vlvp~gASpHdYsLrP 67 (318)
T COG4531 38 FIASAIADG---VGEPEVLLPGGASPHDYSLRP 67 (318)
T ss_pred HHHHHHHcc---CCCCceecCCCCCcccccCCh
Confidence 366777443 566789999984 76654
No 127
>smart00722 CASH Domain present in carbohydrate binding proteins and sugar hydrolses.
Probab=39.40 E-value=1.8e+02 Score=23.22 Aligned_cols=12 Identities=25% Similarity=0.595 Sum_probs=6.3
Q ss_pred CCeEEEeeeEec
Q 042768 160 NNIRINGLLSLN 171 (397)
Q Consensus 160 ~nv~I~~v~i~~ 171 (397)
++++++++++.+
T Consensus 45 ~~~~~~G~~~~~ 56 (146)
T smart00722 45 NDVRVDGITIGG 56 (146)
T ss_pred CCCEEECeEEEe
Confidence 344555555544
No 128
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=34.85 E-value=48 Score=28.78 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=6.7
Q ss_pred ChhhhHhHhHH
Q 042768 1 MERLFSSLFSS 11 (397)
Q Consensus 1 m~~~~~~~~~~ 11 (397)
|+++|++....
T Consensus 1 m~~~~~~~~~~ 11 (178)
T PRK13884 1 MSRILKRITAG 11 (178)
T ss_pred CcHHHHHHHHH
Confidence 77766665543
No 129
>PF10162 G8: G8 domain; InterPro: IPR019316 This entry represents a domain found in disease proteins PKHD1 and KIAA1199 and is named G8 after its 8 conserved glycines. It is predicted to contain 10 beta strands and an alpha helix [].
Probab=33.89 E-value=1.5e+02 Score=23.97 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCcEEEEcCcEEEecceeecCCCCCcceEEEEccEEEeeccccccCCCcceEEEEeeeceEEec-cEEe
Q 042768 64 ESATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTLVAPADYRVLGQADNWLSFEGVSGVSIIG-GALD 131 (397)
Q Consensus 64 ~g~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l~~~~~~~~~~~~~~~i~~~~~~nv~I~G-G~id 131 (397)
.|..|+||+|...+-..... . --.|.++|+|.+..+ .+ +.+. ++.|.|.| |.+.
T Consensus 11 ~g~~V~I~~g~~v~lD~~~~----~-l~~l~I~G~L~f~~~-~~-------~~L~-a~~I~V~~Gg~l~ 65 (125)
T PF10162_consen 11 AGDNVVIPAGQTVLLDVSTP----K-LGSLIIGGTLIFDDD-RD-------ITLR-AEYILVEGGGRLI 65 (125)
T ss_pred CCCEEEECCCCEEEEcCCCh----h-eeEEEEEEEEEEccC-CC-------CEEE-EEEEEECCCCeEE
Confidence 47899999997643221211 1 234455889988654 11 2222 67788888 4543
No 130
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=31.25 E-value=1e+02 Score=29.49 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.9
Q ss_pred ccCCeEEEeeeEecCc
Q 042768 158 NSNNIRINGLLSLNSQ 173 (397)
Q Consensus 158 ~~~nv~I~~v~i~~~~ 173 (397)
.-+++..+++++++..
T Consensus 187 ~~ndf~~~nlT~en~~ 202 (405)
T COG4677 187 QNNDFQLQNLTIENTL 202 (405)
T ss_pred ecCCcccccceeeccc
Confidence 3345555555555443
No 131
>COG5510 Predicted small secreted protein [Function unknown]
Probab=28.01 E-value=1.4e+02 Score=19.38 Aligned_cols=9 Identities=33% Similarity=0.147 Sum_probs=3.4
Q ss_pred hHHHHHHHH
Q 042768 48 STQAFAKAW 56 (397)
Q Consensus 48 dt~aiq~Ai 56 (397)
|-+.--+||
T Consensus 31 DIq~~G~al 39 (44)
T COG5510 31 DIQSGGKAL 39 (44)
T ss_pred hHHHHHHHH
Confidence 333333344
No 132
>PRK13617 psbV cytochrome c-550; Provisional
Probab=27.53 E-value=1.1e+02 Score=26.38 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhh
Q 042768 50 QAFAKAWAAACA 61 (397)
Q Consensus 50 ~aiq~Ai~~ac~ 61 (397)
.+=++.++..|+
T Consensus 60 ~~G~~~F~~~C~ 71 (170)
T PRK13617 60 KAGRKVFNTSCG 71 (170)
T ss_pred HHHHHHHHcchh
Confidence 333445655554
No 133
>COG3043 NapB Nitrate reductase cytochrome c-type subunit [Energy production and conversion]
Probab=25.84 E-value=58 Score=27.13 Aligned_cols=14 Identities=21% Similarity=0.173 Sum_probs=8.2
Q ss_pred ChhhhHhHhHHHHH
Q 042768 1 MERLFSSLFSSLFI 14 (397)
Q Consensus 1 m~~~~~~~~~~~~~ 14 (397)
|+++|++..+.++.
T Consensus 2 ~~~~~~~~~s~~~a 15 (155)
T COG3043 2 MKKHIKKQGSCLIA 15 (155)
T ss_pred chhhhhhhhHHHHH
Confidence 66767666544443
No 134
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.44 E-value=54 Score=25.43 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=10.7
Q ss_pred cCCCcEEEEcCcEEEe
Q 042768 62 STESATLYVPKGRYLL 77 (397)
Q Consensus 62 ~~~g~~v~~p~G~Y~~ 77 (397)
+..|..|++|||+|+.
T Consensus 85 Q~~Ge~V~i~pg~~H~ 100 (114)
T PF02373_consen 85 QKPGEFVFIPPGAYHQ 100 (114)
T ss_dssp EETT-EEEE-TT-EEE
T ss_pred ECCCCEEEECCCceEE
Confidence 4678999999999975
No 135
>PHA00672 hypothetical protein
Probab=21.56 E-value=1.4e+02 Score=24.18 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=19.0
Q ss_pred cEEEEcCcEEEecceeecCCCCCcceEEEEccEE
Q 042768 66 ATLYVPKGRYLLGSVAFNGDCKSSDITFRIDGTL 99 (397)
Q Consensus 66 ~~v~~p~G~Y~~~~l~l~~~~~s~~v~l~~~G~l 99 (397)
.++.+|+|+-+++.+.-- + ++ |.+.|.+
T Consensus 50 Rei~IPkGt~LtG~~hkf----~-~~-ii~sG~i 77 (152)
T PHA00672 50 RTIRIPAGVALTGALIKV----S-TV-LIFSGHA 77 (152)
T ss_pred EEEeccCceeeeeeeeEe----e-EE-EEecccE
Confidence 478999999998875432 3 55 6566633
No 136
>PF08830 DUF1806: Protein of unknown function (DUF1806); InterPro: IPR014934 This entry consists of bacterial uncharacterised proteins. The structure of one of the proteins has been solved and it adopts a beta barrel-like structure. ; PDB: 1NJH_A.
Probab=21.00 E-value=4.3e+02 Score=20.98 Aligned_cols=70 Identities=17% Similarity=0.343 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEE----cCcEEEec--------ceeecCCCCCcceEEEEc-cEEEeeccccc-cCCCcc
Q 042768 48 STQAFAKAWAAACASTESATLYV----PKGRYLLG--------SVAFNGDCKSSDITFRID-GTLVAPADYRV-LGQADN 113 (397)
Q Consensus 48 dt~aiq~Ai~~ac~~~~g~~v~~----p~G~Y~~~--------~l~l~~~~~s~~v~l~~~-G~l~~~~~~~~-~~~~~~ 113 (397)
+.+++|++|+.- .+.-||+ --|-|-.- .-.++ |..+..+ |.|.+...+.. ......
T Consensus 4 ~~~~VQ~~l~~~----~~~~vYlHlETTnGAYAsH~d~~~~~agafiR------Na~i~ye~g~i~G~gPyRvGLK~~~G 73 (114)
T PF08830_consen 4 DKEEVQALLDSF----ANKDVYLHLETTNGAYASHFDESFFNAGAFIR------NAKIRYEHGKIKGDGPYRVGLKLEIG 73 (114)
T ss_dssp -HHHHHHHHHHT----TTS-EEEEEEEEE------------EEEEEEE------EEEE-EEEEEEESSSSEEEEEEESSS
T ss_pred CHHHHHHHHHHh----cCCceEEEEeecCchhhccccccccChhhEEE------eeEEEEEEeEEEcCCCeEEEEecCCC
Confidence 567899999865 2445665 33555321 12343 6666665 66665432211 111256
Q ss_pred eEEEEeeeceEEec
Q 042768 114 WLSFEGVSGVSIIG 127 (397)
Q Consensus 114 ~i~~~~~~nv~I~G 127 (397)
|++.+|.....+..
T Consensus 74 WvYaEGLTh~e~d~ 87 (114)
T PF08830_consen 74 WVYAEGLTHYEVDE 87 (114)
T ss_dssp EEEEEEE-EEEE-T
T ss_pred EEEEccceeeEEcC
Confidence 89988888887765
No 137
>KOG1777 consensus Putative Zn-finger protein [General function prediction only]
Probab=20.72 E-value=1.1e+02 Score=30.47 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=15.9
Q ss_pred cceeeceeeEEEEecEEecCCeeEEeC
Q 042768 203 GIHVQLSMNVKITNCTIKTGDDCIPIG 229 (397)
Q Consensus 203 Gi~~~~s~nv~I~n~~i~~~dD~i~i~ 229 (397)
|+.+...+|-+|+.+.|..++.++-+.
T Consensus 420 gvqirtGsNP~i~~NkIWggqNGvLVy 446 (625)
T KOG1777|consen 420 GVQIRTGSNPKIRRNKIWGGQNGVLVY 446 (625)
T ss_pred ceEeecCCCCeeeecceecCcccEEEE
Confidence 455554456666666666666665443
No 138
>PF04956 TrbC: TrbC/VIRB2 family; InterPro: IPR007039 Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure[]. This family also contains several VirB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species [].
Probab=20.68 E-value=1.1e+02 Score=23.26 Aligned_cols=11 Identities=18% Similarity=0.132 Sum_probs=5.4
Q ss_pred ChhhhHhHhHH
Q 042768 1 MERLFSSLFSS 11 (397)
Q Consensus 1 m~~~~~~~~~~ 11 (397)
||+...++...
T Consensus 1 mk~~~~~~~~~ 11 (99)
T PF04956_consen 1 MKKVQSKKRRK 11 (99)
T ss_pred CchHHHHHHHH
Confidence 76444444433
No 139
>PRK02710 plastocyanin; Provisional
Probab=20.42 E-value=1.6e+02 Score=23.47 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=4.6
Q ss_pred cEEEEcCcE
Q 042768 66 ATLYVPKGR 74 (397)
Q Consensus 66 ~~v~~p~G~ 74 (397)
..|.+++|.
T Consensus 47 ~~i~v~~Gd 55 (119)
T PRK02710 47 STLTIKAGD 55 (119)
T ss_pred CEEEEcCCC
Confidence 345555553
No 140
>PF15240 Pro-rich: Proline-rich
Probab=20.41 E-value=75 Score=27.54 Aligned_cols=6 Identities=33% Similarity=0.429 Sum_probs=2.2
Q ss_pred HHHHhc
Q 042768 20 SINLAS 25 (397)
Q Consensus 20 ~~~~~~ 25 (397)
||+|++
T Consensus 10 LLALSS 15 (179)
T PF15240_consen 10 LLALSS 15 (179)
T ss_pred HHHhhh
Confidence 333333
Done!