BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042770
(75 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DNW|A Chain A, Solution Structure Of Rsgi Ruh-059, An Acp Domain Of
Acyl Carrier Protein, Mitochondrial [precursor] From
Human Cdna
Length = 99
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 49/69 (71%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D ++ V+K + +DP K++ N HF DLGLD+LD VEI+MA+++EFGFEIPD +A+ +
Sbjct: 18 DRVLYVLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMC 77
Query: 61 INMAVNFTA 69
V++ A
Sbjct: 78 PQEIVDYIA 86
>pdb|4DXE|H Chain H, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|L Chain L, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|K Chain K, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|G Chain G, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|J Chain J, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
pdb|4DXE|I Chain I, 2.52 Angstrom Resolution Crystal Structure Of The
Acyl-Carrier-Protein Synthase (Acps)-Acyl Carrier
Protein (Acp) Protein-Protein Complex From
Staphylococcus Aureus Subsp. Aureus Col
Length = 101
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D + +I + VD KVT + F+ DLG D+LD E+VM L++EFG EIPD EA+ INT
Sbjct: 29 DKVKDIIVDRLGVDADKVTEDASFKDDLGADSLDIAELVMELEDEFGTEIPDEEAEKINT 88
Query: 61 INMAVNFTAS 70
+ AV F S
Sbjct: 89 VGDAVKFINS 98
>pdb|1X3O|A Chain A, Crystal Structure Of The Acyl Carrier Protein From
Thermus Thermophilus Hb8
Length = 80
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +VI + V+P KVT F DLG D+LD VE++M L++EFG EI D EA+ I T
Sbjct: 8 EKVKAVIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRT 67
Query: 61 INMAVNFTASHC 72
+ AV + +
Sbjct: 68 VKDAVEYIKAKL 79
>pdb|2L0Q|A Chain A, Nmr Solution Structure Of Vibrio Harveyi Acyl Carrier
Protein (Acp)
Length = 80
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
VD +V F DLG D+LD VE+VMAL+EEF EIPD EA+ I T+ A+++ SH
Sbjct: 21 VDEAEVKNEASFVDDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYVNSH 79
>pdb|2K92|A Chain A, Structural Modification Of Acyl Carrier Protein By
Butyryl Group
pdb|2K93|A Chain A, Structural Modification Of Acyl Carrier Protein By
Butyryl Group
pdb|2K94|A Chain A, Structural Modification Of Acyl Carrier Protein By
Butyryl Group
Length = 77
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I V +VT N F DLG D+LD VE+VMAL+EEF EIPD EA+ I T
Sbjct: 5 ERVKKIIGQQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 64
Query: 61 INMAVNFTASH 71
+ A+++ H
Sbjct: 65 VQAAIDYINGH 75
>pdb|1T8K|A Chain A, Crystal Structure Of Apo Acyl Carrier Protein From E.
Coli
pdb|2FAC|A Chain A, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAC|B Chain B, Crystal Structure Of E. Coli Hexanoyl-acp
pdb|2FAD|A Chain A, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAD|B Chain B, Crystal Structure Of E. Coli Heptanoyl-Acp
pdb|2FAE|A Chain A, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|2FAE|B Chain B, Crystal Structure Of E. Coli Decanoyl-Acp
pdb|1ACP|A Chain A, Refinement Of The Nmr Structures For Acyl Carrier
Protein With Scalar Coupling Data
pdb|4ETW|D Chain D, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
pdb|4ETW|B Chain B, Structure Of The Enzyme-Acp Substrate Gatekeeper Complex
Required For Biotin Synthesis
Length = 77
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
V +VT N F DLG D+LD VE+VMAL+EEF EIPD EA+ I T+ A+++ H
Sbjct: 17 VKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGH 75
>pdb|1L0H|A Chain A, Crystal Structure Of Butyryl-Acp From E.Coli
pdb|2FHS|C Chain C, Structure Of Acyl Carrier Protein Bound To Fabi, The
Enoyl Reductase From Escherichia Coli
pdb|3NY7|B Chain B, Stas Domain Of Ychm Bound To Acp
Length = 78
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I V +VT N F DLG D+LD VE+VMAL+EEF EIPD EA+ I T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 65
Query: 61 INMAVNFTASH 71
+ A+++ H
Sbjct: 66 VQAAIDYINGH 76
>pdb|3EJB|A Chain A, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|C Chain C, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|E Chain E, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJB|G Chain G, Crystal Structure Of P450bioi In Complex With
Tetradecanoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|A Chain A, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|C Chain C, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|E Chain E, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJD|G Chain G, Crystal Structure Of P450bioi In Complex With
Hexadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|A Chain A, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|C Chain C, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|E Chain E, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
pdb|3EJE|G Chain G, Crystal Structure Of P450bioi In Complex With
Octadec-9z- Enoic Acid Ligated Acyl Carrier Protein
Length = 97
Score = 60.1 bits (144), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 43/71 (60%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I V +VT N F DLG D+LD VE+VMAL+EEF EIPD EA+ I T
Sbjct: 25 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITT 84
Query: 61 INMAVNFTASH 71
+ A+++ H
Sbjct: 85 VQAAIDYINGH 95
>pdb|2L3V|A Chain A, Nmr Structure Of Acyl Carrier Protein From Brucella
Melitensis
Length = 79
Score = 59.3 bits (142), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/56 (55%), Positives = 37/56 (66%)
Query: 12 NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
VD KVT F DLG D+LD VE+VMA +EEFG EIPD+ A+ I T+ AV F
Sbjct: 18 GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKF 73
>pdb|1L0I|A Chain A, Crystal Structure Of Butyryl-Acp I62m Mutant
Length = 78
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I V +VT N F DLG D+LD VE+VMAL+EEF EIPD EA+ + T
Sbjct: 6 ERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTT 65
Query: 61 INMAVNFTASH 71
+ A+++ H
Sbjct: 66 VQAAIDYINGH 76
>pdb|2EHS|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 1)
pdb|2EHT|A Chain A, Crystal Structure Of Acyl Carrier Protein From Aquifex
Aeolicus (Form 2)
Length = 77
Score = 58.5 bits (140), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I V+ K+T F DLG D+LD VE++MA +EEFG EIPD +A+ I T
Sbjct: 4 ERVKEIIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQT 63
Query: 61 INMAVNFTASHCQG 74
+ +N+ G
Sbjct: 64 VGDVINYLKEKVGG 77
>pdb|3GZL|A Chain A, Crystal Structure Of Holo Pfacp Disulfide-Linked Dimer
pdb|3GZM|A Chain A, Crystal Structure Of Holo Pfacp Reduced Monomer
pdb|3GZM|B Chain B, Crystal Structure Of Holo Pfacp Reduced Monomer
Length = 81
Score = 53.1 bits (126), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D I +I +V+ K+ N +F DLG D+LD VE++MAL+E+F I D +A INT
Sbjct: 8 DDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINT 67
Query: 61 INMAVNF 67
+ A+++
Sbjct: 68 VQDAIDY 74
>pdb|2FQ0|A Chain A, Solution Structure Of Major Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
pdb|2FQ2|A Chain A, Solution Structure Of Minor Conformation Of Holo-Acyl
Carrier Protein From Malaria Parasite Plasmodium
Falciparum
Length = 79
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D I +I +V+ K+ N +F DLG D+LD VE++MAL+E+F I D +A INT
Sbjct: 6 DDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINT 65
Query: 61 INMAVNF 67
+ A+++
Sbjct: 66 VQDAIDY 72
>pdb|2X2B|A Chain A, Crystal Structure Of Malonyl-Acp (Acyl Carrier Protein)
From Bacillus Subtilis
Length = 78
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I + VD V F+ DLG D+LD VE+VM L++EF EI D +A+ I T
Sbjct: 7 ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 66
Query: 61 INMAVNF 67
+ AVN+
Sbjct: 67 VGDAVNY 73
>pdb|1HY8|A Chain A, Solution Structure Of B. Subtilis Acyl Carrier Protein
Length = 76
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+ + +I + VD V F+ DLG D+LD VE+VM L++EF EI D +A+ I T
Sbjct: 5 ERVTKIIVDRLGVDEADVKLEASFKEDLGADSLDVVELVMELEDEFDMEISDEDAEKIAT 64
Query: 61 INMAVNF 67
+ AVN+
Sbjct: 65 VGDAVNY 71
>pdb|1F80|D Chain D, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|E Chain E, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
pdb|1F80|F Chain F, Holo-(Acyl Carrier Protein) Synthase In Complex With
Holo- (Acyl Carrier Protein)
Length = 81
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%)
Query: 3 IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
+ +I + VD V F+ DLG D LD VE+VM L++EF EI D +A+ I T+
Sbjct: 12 VTKIIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVG 71
Query: 63 MAVNF 67
AVN+
Sbjct: 72 DAVNY 76
>pdb|2LOL|A Chain A, Nmr Structure Of An Acyl-Carrier Protein From Rickettsia
Prowazekii, Seattle Structural Genomics Center For
Infectious Disease (Ssgcid)
Length = 81
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTI 61
+I ++ N D +TT+ F DL D+LD VE++MA++ E+G +IPD+EA I T+
Sbjct: 10 KVIEMVAEKLNKDKAIITTDSRFIEDLKADSLDTVELMMAIEVEYGIDIPDDEATKIKTV 69
Query: 62 NMAVNF 67
+ + +
Sbjct: 70 SDVIKY 75
>pdb|2QNW|A Chain A, Toxoplasma Gondii Apicoplast-Targeted Acyl Carrier
Protein
Length = 82
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 6 VIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAV 65
V+ + VD ++ +F DL D+LD VE+VMA +E+FG IPD EA I T+ A+
Sbjct: 15 VVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDAL 74
Query: 66 NF 67
++
Sbjct: 75 SY 76
>pdb|2AVA|A Chain A, Solution Structure Of Stearoyl-Acyl Carrier Protein
pdb|2FVA|A Chain A, Structure Of 18:0-Acp With Docked Fatty Acid
pdb|2FVE|A Chain A, Structure Of 10:0-Acp (Protein Alone)
pdb|2FVF|A Chain A, Structure Of 10:0-Acp (Protein With Docked Fatty Acid)
Length = 82
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVN 66
VT + F LG D+LD VEIVM L+EEFG + +++A I+TI A +
Sbjct: 25 VTADSEFS-KLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72
>pdb|2L4B|A Chain A, Solution Structure Of A Putative Acyl Carrier Protein
From Anaplasma Phagocytophilum. Seattle Structural
Genomics Center For Infectious Disease Target
Anpha.01018.A
Length = 88
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 19 TTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
TTN D LD+LDFV+++M+L+E F EI D +A + T++ + AS
Sbjct: 34 TTN--LAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYIASK 84
>pdb|2XZ0|D Chain D, The Structure Of The 2:1 (Partially Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier
Protein.
pdb|2XZ1|C Chain C, The Structure Of The 2:2 (Fully Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier
Protein.
pdb|2XZ1|D Chain D, The Structure Of The 2:2 (Fully Occupied) Complex
Between Stearoyl Acyl Carrier Protein Desaturase From
Ricinus Communis (Castor Bean) And Acyl Carrier Protein
Length = 82
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVN 66
VT + F LG D LD VEIVM L+EEFG + +++A I+TI A +
Sbjct: 25 VTADSEFS-KLGADXLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAAD 72
>pdb|2KWL|A Chain A, Solution Structure Of Acyl Carrier Protein From Borrelia
Burgdorferi
Length = 84
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 17 KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
++TT+ F DL D+LD E++ L+E F +IP+NEA+ T+ VNF
Sbjct: 28 EITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82
>pdb|2KOO|A Chain A, Nmr Solution Structures Of Hexanoyl-Acp From The
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOP|A Chain A, Nmr Solution Structures Of 3-Oxooctanyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOQ|A Chain A, Nmr Solution Structures Of 3-Hydroxyoctanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOR|A Chain A, Nmr Solution Structures Of 2-Octenoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
pdb|2KOS|A Chain A, Nmr Solution Structures Of Octanoyl-Acp From
Streptomyces Coelicolor Fatty Acid Synthase
Length = 81
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
V + F DL +D+L VE+V+A +E F +IPD++ + T+ A + H
Sbjct: 26 VKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 79
>pdb|2CNR|A Chain A, Structural Studies On The Interaction Of Scfas Acp With
Acps
Length = 82
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71
V + F DL +D+L VE+V+A +E F +IPD++ + T+ A + H
Sbjct: 27 VKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILDH 80
>pdb|1KLP|A Chain A, The Solution Structure Of Acyl Carrier Protein From
Mycobacterium Tuberculosis
Length = 115
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 13 VDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
++P ++T F DL +D+L VEI + ++++G +IPD + + T+ V +
Sbjct: 22 IEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAY 76
>pdb|3LMO|A Chain A, Crystal Structure Of Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2KW2|A Chain A, Solution Nmr Of The Specialized Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
pdb|2LL8|A Chain A, Solution Nmr Structure Of The Specialized Holo-Acyl
Carrier Protein Rpa2022 From Rhodopseudomonas Palustris
Refined With Nh Rdcs, Northeast Structural Genomics
Consortium Target Rpr324
pdb|2LPK|A Chain A, Solution Nmr Of The Specialized Apo-Acyl Carrier Protein
(Rpa2022) From Rhodopseudomonas Palustris, Northeast
Structural Genomics Consortium Target Rpr324
Length = 101
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIP 51
D + ++I ++ +T H DLG+D+LDF++I A+ + FG ++P
Sbjct: 6 DRVATIIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLP 56
>pdb|2LTE|A Chain A, Solution Nmr Structure Of The Specialized Acyl Carrier
Protein Pa3334 (Apo) From Pseudomonas Aeruginosa,
Northeast Structural Genomics Consortium Target Pat415
Length = 103
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D +++V+ V +++ + + DL D+L E+ + L++EFG D+E D++ T
Sbjct: 29 DHLLTVLSVASGVPKEEISRDSRME-DLAFDSLVVSELSLKLRKEFGVTGVDDELDLLET 87
Query: 61 INMAVNFTASH 71
++ H
Sbjct: 88 VDELFQLVEKH 98
>pdb|1AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein
From Streptomyces Coelicolor A3(2), Nmr, 24 Structures
pdb|2AF8|A Chain A, Actinorhodin Polyketide Synthase Acyl Carrier Protein
From Streptomyces Coelicolor A3(2), Nmr, Minimized
Average Structure
Length = 86
Score = 28.9 bits (63), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D+G D+L +E L+ +G IPD+ A ++T
Sbjct: 37 DIGYDSLALMETAARLESRYGVSIPDDVAGRVDT 70
>pdb|2K0X|A Chain A, The Actinorhodin Holo Acyl Carrier Protein From S.
Coelicolor
pdb|2K0Y|A Chain A, The Actinorhodin Apo Acyl Carrier Protein From S.
Coelicolor
pdb|2KG6|A Chain A, Solution Structure Of The Acetyl Actinorhodin Acyl
Carrier Protein From Streptomyces Coelicolor
pdb|2KG8|A Chain A, Nmr Solution Structures Of Malonyl Acp From The
Actinorhodin Polyketide Synthase In Streptomyces
Coelicolor
pdb|2KG9|A Chain A, Nmr Solution Structures Of Butyryl-Acp (A Non-Polar, Non
Pathway Intermediate) From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGA|A Chain A, Nmr Solution Structures Of Hexanoyl Acp (A Non Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGC|A Chain A, Nmr Solution Structures Of Octanoyl Acp (A Non-Natural
Intermediate) From The Actinorhodin Polyketide Synthase
In Streptomyces Coelicolor
pdb|2KGD|A Chain A, Nmr Solution Structures Of 3-Oxo-Butyl-Acp, An
Intermediate Mimic From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
pdb|2KGE|A Chain A, Nmr Solution Structures Of 3,5-Dioxohexyl Acp (A
Triketide Mimic) From The Actinorhodin Polyketide
Synthase In Streptomyces Coelicolor
Length = 86
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
D+G D+L +E L+ +G IPD+ A ++T
Sbjct: 37 DIGYDSLALMETAARLESRYGVSIPDDVAGRVDT 70
>pdb|2AW6|A Chain A, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2AW6|B Chain B, Structure Of A Bacterial Peptide PheromoneRECEPTOR COMPLEX
And Its Mechanism Of Gene Regulation
pdb|2GRL|A Chain A, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|B Chain B, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|C Chain C, Crystal Structure Of DctICF10 COMPLEX
pdb|2GRL|D Chain D, Crystal Structure Of DctICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 8 KNFQNVDPFKVTTNGHFQIDLG 29
KNFQ ++P ++T+ +F I LG
Sbjct: 94 KNFQRIEPKRLTSLQYFSIYLG 115
>pdb|2AXV|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AXV|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AXV|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AXV|D Chain D, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 8 KNFQNVDPFKVTTNGHFQIDLG 29
KNFQ ++P ++T+ +F I LG
Sbjct: 94 KNFQRIEPKRLTSLQYFSIYLG 115
>pdb|2GRM|A Chain A, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|B Chain B, Crystal Structure Of PrgxICF10 COMPLEX
pdb|2GRM|C Chain C, Crystal Structure Of PrgxICF10 COMPLEX
Length = 317
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 8 KNFQNVDPFKVTTNGHFQIDLG 29
KNFQ ++P ++T+ +F I LG
Sbjct: 94 KNFQRIEPKRLTSLQYFSIYLG 115
>pdb|2AWI|A Chain A, Structure Of Prgx Y153c Mutant
pdb|2AWI|B Chain B, Structure Of Prgx Y153c Mutant
pdb|2AWI|C Chain C, Structure Of Prgx Y153c Mutant
pdb|2AWI|D Chain D, Structure Of Prgx Y153c Mutant
pdb|2AWI|E Chain E, Structure Of Prgx Y153c Mutant
pdb|2AWI|F Chain F, Structure Of Prgx Y153c Mutant
pdb|2AWI|G Chain G, Structure Of Prgx Y153c Mutant
pdb|2AWI|H Chain H, Structure Of Prgx Y153c Mutant
pdb|2AWI|I Chain I, Structure Of Prgx Y153c Mutant
pdb|2AWI|J Chain J, Structure Of Prgx Y153c Mutant
pdb|2AWI|K Chain K, Structure Of Prgx Y153c Mutant
pdb|2AWI|L Chain L, Structure Of Prgx Y153c Mutant
Length = 317
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 8 KNFQNVDPFKVTTNGHFQIDLG 29
KNFQ ++P ++T+ +F I LG
Sbjct: 94 KNFQRIEPKRLTSLQYFSIYLG 115
>pdb|1FH1|A Chain A, Backbone Fold Of Nodf
Length = 92
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 17 KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
++TT+ LG+D+L +++ L++ +G +I N AD + +N
Sbjct: 31 EITTDTELT-SLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLN 75
>pdb|1VKU|A Chain A, Crystal Structure Of Acyl Carrier Protein (Tm0175) From
Thermotoga Maritima At 2.00 A Resolution
Length = 100
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 27 DLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73
+LG D++D +++V ++EF I D E I + ++ +
Sbjct: 45 ELGFDSIDVIDLVXFFEDEFALRIEDEEISKIRKVKDLIDIVIKKLE 91
>pdb|2CGQ|A Chain A, A Putative Acyl Carrier Protein(Rv0033) From
Mycobacterium Tuberculosis
Length = 113
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTIN 62
+T N DLG D+L +++ L++EF I +A I T+
Sbjct: 45 ITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVG 89
>pdb|3OLP|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
pdb|3OLP|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Multiple Human
Pathogens
Length = 570
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
+DLG +NL F MA+ G P ++D+IN + +
Sbjct: 11 VDLGTENLYFQSNAMAIHNRAG--QPAQQSDLINVAQLTAQY 50
>pdb|3NA5|A Chain A, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens.
pdb|3NA5|B Chain B, Crystal Structure Of A Bacterial Phosphoglucomutase, An
Enzyme Important In The Virulence Of Several Human
Pathogens
Length = 570
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67
+DLG +NL F MA+ G P ++D+IN + +
Sbjct: 11 VDLGTENLYFQSNAMAIHNRAG--QPAQQSDLINVAQLTAQY 50
>pdb|4FX5|A Chain A, Von Willebrand Factor Type A From Catenulispora
Acidiphila
Length = 464
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNE 54
+DLG +NL F + +F FEI NE
Sbjct: 11 VDLGTENLYFQSNAXSQYPDFAFEINQNE 39
>pdb|1OR5|A Chain A, Solution Structure Of The Holo-Form Of The Frenolicin
Acyl Carrier Protein, Minimized Mean Structure
Length = 83
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINT 60
+DLG D+L +E L++ +G + D + T
Sbjct: 34 VDLGYDSLALLETAAVLQQRYGIALTDETVGRLGT 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,196,511
Number of Sequences: 62578
Number of extensions: 75486
Number of successful extensions: 254
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 43
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)