Query 042770
Match_columns 75
No_of_seqs 208 out of 1195
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 09:17:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042770.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042770hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK08172 putative acyl carrier 99.9 3.5E-24 7.5E-29 116.0 5.9 74 1-74 7-80 (82)
2 PRK05350 acyl carrier protein; 99.9 8.3E-23 1.8E-27 110.5 5.7 72 2-73 10-81 (82)
3 PRK05883 acyl carrier protein; 99.9 1.7E-22 3.7E-27 111.3 6.4 73 1-73 17-89 (91)
4 CHL00124 acpP acyl carrier pro 99.9 1.8E-22 3.9E-27 108.9 5.7 75 1-75 8-82 (82)
5 TIGR00517 acyl_carrier acyl ca 99.9 3.9E-22 8.6E-27 106.5 5.6 72 1-72 6-77 (77)
6 PRK07117 acyl carrier protein; 99.9 4E-22 8.6E-27 107.3 5.4 71 1-72 8-79 (79)
7 PRK12449 acyl carrier protein; 99.9 1E-21 2.2E-26 105.6 6.3 72 1-72 8-79 (80)
8 KOG1748 Acyl carrier protein/N 99.9 3.5E-22 7.7E-27 115.0 3.8 74 1-74 56-129 (131)
9 PRK07639 acyl carrier protein; 99.9 3.1E-21 6.8E-26 105.3 6.8 73 1-73 8-83 (86)
10 PTZ00171 acyl carrier protein; 99.9 1.8E-21 4E-26 115.1 6.3 75 1-75 73-147 (148)
11 PRK05828 acyl carrier protein; 99.8 3E-21 6.5E-26 104.9 6.2 73 1-74 8-81 (84)
12 COG0236 AcpP Acyl carrier prot 99.8 7.2E-21 1.6E-25 102.4 6.0 71 2-72 9-79 (80)
13 PRK06508 acyl carrier protein; 99.8 5.7E-21 1.2E-25 105.5 5.3 74 1-74 6-90 (93)
14 PRK00982 acpP acyl carrier pro 99.8 1E-20 2.2E-25 101.2 5.5 71 2-72 7-77 (78)
15 PRK09184 acyl carrier protein; 99.8 4.4E-20 9.5E-25 101.3 6.3 73 1-73 9-88 (89)
16 PRK07081 acyl carrier protein; 99.8 2.6E-19 5.7E-24 97.1 5.8 72 1-73 3-78 (83)
17 PF00550 PP-binding: Phosphopa 99.8 4.5E-19 9.8E-24 91.9 6.3 67 1-68 1-67 (67)
18 PRK05087 D-alanine--poly(phosp 99.8 1.4E-18 3.1E-23 93.2 6.1 72 1-72 5-78 (78)
19 TIGR01688 dltC D-alanine--poly 99.6 4.4E-16 9.6E-21 82.5 5.5 69 1-70 2-73 (73)
20 PF14573 PP-binding_2: Acyl-ca 99.4 9.2E-13 2E-17 71.4 5.4 71 2-73 14-89 (96)
21 smart00823 PKS_PP Phosphopante 99.1 4.5E-10 9.8E-15 58.9 6.4 68 3-71 17-85 (86)
22 TIGR02813 omega_3_PfaA polyket 99.1 1.5E-10 3.2E-15 90.0 5.8 72 1-72 1310-1383(2582)
23 COG3433 Aryl carrier domain [S 99.0 9.4E-10 2E-14 57.7 5.4 71 2-74 2-72 (74)
24 PRK06060 acyl-CoA synthetase; 99.0 8.7E-10 1.9E-14 77.3 6.0 70 2-72 549-619 (705)
25 TIGR03443 alpha_am_amid L-amin 98.9 4.5E-09 9.7E-14 78.0 6.7 70 2-72 852-921 (1389)
26 PRK10252 entF enterobactin syn 98.7 3.8E-08 8.3E-13 72.5 6.1 67 2-71 982-1048(1296)
27 PRK12467 peptide synthase; Pro 98.5 1.9E-07 4.2E-12 75.1 6.3 66 2-70 3609-3674(3956)
28 PRK12316 peptide synthase; Pro 98.5 4.5E-07 9.7E-12 74.2 6.8 67 2-71 5076-5142(5163)
29 PRK05691 peptide synthase; Val 98.5 4.1E-07 8.9E-12 73.6 6.4 67 2-71 4245-4311(4334)
30 PRK12467 peptide synthase; Pro 98.4 4.8E-07 1E-11 73.0 6.1 67 2-71 1034-1100(3956)
31 TIGR02813 omega_3_PfaA polyket 98.4 2.5E-07 5.5E-12 72.7 4.5 71 2-72 1215-1287(2582)
32 PRK05691 peptide synthase; Val 98.4 6.4E-07 1.4E-11 72.6 6.3 67 2-71 1642-1708(4334)
33 PRK12316 peptide synthase; Pro 98.3 1.4E-06 2.9E-11 71.5 5.9 67 2-71 2520-2586(5163)
34 KOG1202 Animal-type fatty acid 98.0 4.5E-06 9.7E-11 62.8 2.9 60 3-64 2009-2069(2376)
35 PF07377 DUF1493: Protein of u 97.8 6.9E-05 1.5E-09 42.4 4.8 55 1-55 6-64 (111)
36 PF10501 Ribosomal_L50: Riboso 96.6 0.02 4.3E-07 32.4 6.3 67 3-70 13-81 (112)
37 TIGR02372 4_coum_CoA_lig 4-cou 96.1 0.032 6.9E-07 37.5 6.5 55 18-72 36-93 (386)
38 KOG1178 Non-ribosomal peptide 94.9 0.058 1.3E-06 40.8 4.7 55 16-71 614-668 (1032)
39 KOG2452 Formyltetrahydrofolate 92.4 0.27 5.8E-06 34.9 4.1 69 3-73 327-396 (881)
40 PF08766 DEK_C: DEK C terminal 89.8 0.67 1.5E-05 22.7 3.1 27 27-53 15-41 (54)
41 PF03471 CorC_HlyC: Transporte 72.1 11 0.00024 19.6 3.8 28 40-70 17-44 (81)
42 PF00874 PRD: PRD domain; Int 71.4 4.5 9.7E-05 20.6 2.1 22 34-55 58-79 (89)
43 TIGR03853 matur_matur probable 64.6 16 0.00035 19.5 3.3 41 32-72 17-58 (77)
44 PF13592 HTH_33: Winged helix- 64.0 6.2 0.00013 19.6 1.6 21 35-55 7-27 (60)
45 PF10678 DUF2492: Protein of u 62.1 19 0.00041 19.3 3.3 42 31-72 18-60 (78)
46 PF09346 SMI1_KNR4: SMI1 / KNR 59.9 5.9 0.00013 21.5 1.2 17 38-54 6-22 (130)
47 COG4010 Uncharacterized protei 59.5 13 0.00028 22.5 2.6 34 33-67 6-39 (170)
48 PRK00157 rplL 50S ribosomal pr 59.0 12 0.00026 21.8 2.4 22 29-50 14-35 (123)
49 PF14261 DUF4351: Domain of un 58.5 13 0.00029 18.6 2.3 15 38-53 12-26 (59)
50 TIGR00855 L12 ribosomal protei 57.4 13 0.00027 21.7 2.3 22 29-50 15-36 (126)
51 COG1905 NuoE NADH:ubiquinone o 57.1 3.9 8.4E-05 24.8 0.2 65 2-74 95-159 (160)
52 PF03816 LytR_cpsA_psr: Cell e 55.2 9.5 0.00021 22.4 1.6 35 34-68 49-83 (149)
53 PF06755 DUF1219: Protein of u 54.3 17 0.00037 20.8 2.5 20 39-58 27-46 (114)
54 PF03574 Peptidase_S48: Peptid 50.5 48 0.001 19.5 3.9 48 23-72 90-137 (149)
55 TIGR00161 conserved hypothetic 49.7 37 0.00081 21.6 3.8 40 29-68 180-220 (238)
56 smart00860 SMI1_KNR4 SMI1 / KN 49.3 16 0.00034 19.2 1.8 18 37-54 5-22 (129)
57 CHL00083 rpl12 ribosomal prote 49.3 20 0.00044 21.0 2.3 23 29-51 14-36 (131)
58 PF00126 HTH_1: Bacterial regu 49.3 32 0.00069 16.7 2.9 25 26-50 21-45 (60)
59 COG0222 RplL Ribosomal protein 49.2 21 0.00046 20.7 2.4 20 30-49 15-34 (124)
60 PF01171 ATP_bind_3: PP-loop f 49.1 10 0.00022 22.7 1.1 26 27-52 7-32 (182)
61 TIGR00350 lytR_cpsA_psr cell e 48.9 14 0.00031 21.8 1.7 33 36-68 53-85 (152)
62 smart00760 Bac_DnaA_C Bacteria 48.7 5.8 0.00013 19.6 -0.0 22 2-23 4-25 (60)
63 PF14568 SUKH_6: SMI1-KNR4 cel 48.6 14 0.0003 20.0 1.6 17 38-54 3-19 (120)
64 PF09754 PAC2: PAC2 family; I 47.2 31 0.00067 21.1 3.1 40 31-70 176-216 (219)
65 PF09865 DUF2092: Predicted pe 45.5 20 0.00042 22.7 2.0 32 37-68 94-125 (214)
66 TIGR00162 conserved hypothetic 44.6 58 0.0012 20.0 3.9 40 30-69 125-165 (188)
67 PF09869 DUF2096: Uncharacteri 44.1 32 0.00069 21.1 2.7 34 33-67 6-39 (169)
68 TIGR02432 lysidine_TilS_N tRNA 42.8 26 0.00056 20.9 2.2 24 27-50 7-30 (189)
69 cd00387 Ribosomal_L7_L12 Ribos 42.2 33 0.0007 20.0 2.4 22 29-50 12-33 (127)
70 PRK14611 4-diphosphocytidyl-2- 41.7 72 0.0016 20.5 4.2 53 5-57 69-124 (275)
71 COG3900 Predicted periplasmic 41.5 40 0.00087 21.9 2.9 33 37-69 129-161 (262)
72 PF08861 DUF1828: Domain of un 40.9 58 0.0013 17.3 3.3 42 32-73 44-85 (90)
73 PF06720 Phi-29_GP16_7: Bacter 40.4 49 0.0011 19.1 2.9 30 43-72 79-113 (130)
74 PRK09772 transcriptional antit 40.2 30 0.00064 22.3 2.3 21 35-55 134-154 (278)
75 PF10045 DUF2280: Uncharacteri 39.3 30 0.00066 19.5 1.9 20 36-55 23-42 (104)
76 PF10036 RLL: Putative carniti 38.0 1E+02 0.0022 19.9 4.4 45 26-73 125-169 (249)
77 PF00763 THF_DHG_CYH: Tetrahyd 37.8 72 0.0016 17.9 3.4 42 30-71 41-82 (117)
78 COG2877 KdsA 3-deoxy-D-manno-o 37.7 41 0.00088 22.1 2.5 41 27-69 70-112 (279)
79 COG0041 PurE Phosphoribosylcar 36.7 90 0.0019 19.1 3.7 39 34-72 16-54 (162)
80 PF14567 SUKH_5: SMI1-KNR4 cel 35.8 18 0.00038 21.2 0.7 18 37-54 25-42 (132)
81 COG1151 6Fe-6S prismane cluste 35.8 46 0.00099 24.3 2.8 25 29-53 470-494 (576)
82 KOG2573 Ribosome biogenesis pr 35.5 67 0.0014 22.8 3.4 51 14-64 220-272 (498)
83 PF03705 CheR_N: CheR methyltr 35.0 56 0.0012 15.4 4.2 36 35-70 5-53 (57)
84 PF10826 DUF2551: Protein of u 34.8 74 0.0016 17.3 2.9 37 28-72 21-57 (83)
85 COG1669 Predicted nucleotidylt 34.8 60 0.0013 18.1 2.6 40 16-55 36-79 (97)
86 COG4103 Uncharacterized protei 34.1 12 0.00026 22.4 -0.2 46 2-47 52-97 (148)
87 PRK03188 4-diphosphocytidyl-2- 33.2 1.1E+02 0.0024 19.8 4.1 53 4-56 71-126 (300)
88 PRK00650 4-diphosphocytidyl-2- 32.8 1.2E+02 0.0026 20.0 4.2 54 4-57 68-124 (288)
89 PF02594 DUF167: Uncharacteris 32.4 21 0.00046 18.8 0.6 18 2-19 44-61 (77)
90 PRK10696 tRNA 2-thiocytidine b 32.2 44 0.00095 21.3 2.1 22 27-48 37-58 (258)
91 PRK13245 hetR heterocyst diffe 32.0 1.3E+02 0.0027 19.7 4.1 47 24-72 144-190 (299)
92 PF08299 Bac_DnaA_C: Bacterial 31.9 7.9 0.00017 19.9 -1.1 23 2-24 4-26 (70)
93 cd01992 PP-ATPase N-terminal d 31.6 49 0.0011 19.5 2.2 25 27-51 7-31 (185)
94 PRK00343 ipk 4-diphosphocytidy 31.6 1.5E+02 0.0032 19.2 4.8 54 4-57 75-131 (271)
95 PF13565 HTH_32: Homeodomain-l 30.9 56 0.0012 16.4 2.1 18 33-50 49-66 (77)
96 PRK15094 magnesium/cobalt effl 30.8 91 0.002 20.4 3.4 30 39-71 220-249 (292)
97 PF01314 AFOR_C: Aldehyde ferr 30.5 82 0.0018 21.5 3.3 27 23-49 118-144 (382)
98 PF09183 DUF1947: Domain of un 29.9 34 0.00073 17.7 1.1 21 35-55 10-30 (65)
99 TIGR02263 benz_CoA_red_C benzo 29.2 99 0.0021 21.0 3.5 21 35-55 144-164 (380)
100 cd01993 Alpha_ANH_like_II This 29.1 46 0.001 19.4 1.8 20 27-46 7-26 (185)
101 COG0374 HyaB Ni,Fe-hydrogenase 28.9 81 0.0018 22.9 3.1 35 35-70 68-102 (545)
102 COG1316 LytR Transcriptional r 27.1 59 0.0013 21.5 2.1 35 34-68 113-147 (307)
103 PRK05988 formate dehydrogenase 27.0 58 0.0013 19.4 1.9 23 2-24 93-115 (156)
104 PRK00128 ipk 4-diphosphocytidy 26.8 1.6E+02 0.0034 18.9 4.0 53 5-57 73-128 (286)
105 cd01914 HCP Hybrid cluster pro 26.5 80 0.0017 22.2 2.7 24 29-52 333-356 (423)
106 PRK10030 hypothetical protein; 26.4 1.4E+02 0.003 18.5 3.5 54 3-65 132-185 (197)
107 PLN02799 Molybdopterin synthas 26.2 1E+02 0.0022 15.8 2.6 30 40-69 10-39 (82)
108 PF00797 Acetyltransf_2: N-ace 25.7 45 0.00098 20.7 1.3 19 36-54 221-239 (240)
109 smart00151 SWIB SWI complex, B 25.6 87 0.0019 16.2 2.2 30 17-46 46-75 (77)
110 PF00288 GHMP_kinases_N: GHMP 25.1 81 0.0018 15.4 2.0 30 26-55 12-41 (67)
111 cd06571 Bac_DnaA_C C-terminal 25.0 29 0.00062 18.5 0.3 69 1-73 2-74 (90)
112 PF14492 EFG_II: Elongation Fa 24.7 38 0.00081 17.5 0.7 24 29-52 50-73 (75)
113 TIGR03190 benz_CoA_bzdN benzoy 24.6 1.3E+02 0.0029 20.3 3.5 22 34-55 139-160 (377)
114 PRK14608 4-diphosphocytidyl-2- 24.6 1.9E+02 0.004 18.9 4.0 54 4-57 77-134 (290)
115 COG1039 RnhC Ribonuclease HIII 24.5 89 0.0019 21.0 2.5 20 35-54 240-259 (297)
116 COG3423 Nlp Predicted transcri 24.3 36 0.00077 18.3 0.6 18 4-21 50-67 (82)
117 PRK09379 membrane-bound transc 24.0 78 0.0017 21.0 2.2 33 36-68 125-157 (303)
118 PRK12310 hydroxylamine reducta 23.9 96 0.0021 21.9 2.7 24 29-52 341-364 (433)
119 PRK14615 4-diphosphocytidyl-2- 23.8 2.1E+02 0.0046 18.7 4.2 54 4-57 76-132 (296)
120 PRK07571 bidirectional hydroge 23.7 73 0.0016 19.4 1.9 23 2-24 106-128 (169)
121 PRK14616 4-diphosphocytidyl-2- 23.7 2E+02 0.0043 18.6 4.1 53 5-57 72-127 (287)
122 KOG1142 Transcription initiati 23.5 16 0.00034 23.9 -1.0 31 29-59 204-234 (258)
123 PF05372 Delta_lysin: Delta ly 23.5 63 0.0014 13.3 1.1 14 58-71 6-19 (25)
124 PRK05290 hybrid cluster protei 23.3 98 0.0021 22.5 2.7 24 29-52 454-477 (546)
125 TIGR02260 benz_CoA_red_B benzo 23.2 1.2E+02 0.0027 20.9 3.1 19 37-55 166-184 (413)
126 cd03081 TRX_Fd_NuoE_FDH_gamma 23.1 81 0.0017 16.3 1.8 23 2-24 19-41 (80)
127 PRK11573 hypothetical protein; 22.6 1.4E+02 0.003 20.6 3.3 30 39-71 342-371 (413)
128 PRK06030 hypothetical protein; 22.4 31 0.00067 20.0 0.1 20 1-20 26-45 (124)
129 PF12921 ATP13: Mitochondrial 22.4 1.1E+02 0.0024 17.5 2.4 52 2-53 20-89 (126)
130 PRK01212 homoserine kinase; Pr 22.4 2.3E+02 0.0049 18.3 4.1 53 5-57 70-125 (301)
131 KOG3196 NADH:ubiquinone oxidor 22.2 1.3E+02 0.0029 19.2 2.8 64 2-73 131-194 (233)
132 COG5556 Uncharacterized conser 22.0 72 0.0016 17.9 1.5 25 29-55 18-42 (110)
133 PF05269 Phage_CII: Bacterioph 21.8 1.3E+02 0.0028 16.5 2.5 55 6-72 28-82 (91)
134 PRK10265 chaperone-modulator p 21.7 1.6E+02 0.0034 16.2 3.0 25 31-55 48-72 (101)
135 PF12149 HSV_VP16_C: Herpes si 21.5 59 0.0013 13.9 0.9 20 13-32 8-27 (30)
136 PTZ00397 macrophage migration 21.3 75 0.0016 17.6 1.6 17 2-18 80-96 (116)
137 PRK11564 stationary phase indu 21.2 99 0.0021 21.1 2.4 21 35-55 299-319 (426)
138 TIGR00154 ispE 4-diphosphocyti 21.0 2.5E+02 0.0054 18.3 4.5 40 18-57 91-130 (293)
139 TIGR01703 hybrid_clust hydroxy 20.7 1.2E+02 0.0026 22.0 2.7 24 29-52 432-455 (522)
140 PRK00647 hypothetical protein; 20.6 49 0.0011 18.4 0.7 17 2-18 45-61 (96)
141 PRK01530 hypothetical protein; 20.5 45 0.00097 18.8 0.5 17 2-18 57-73 (105)
142 cd07986 LPLAT_ACT14924-like Ly 20.4 95 0.0021 19.0 2.0 27 46-72 183-209 (210)
143 COG2255 RuvB Holliday junction 20.3 1.7E+02 0.0038 19.9 3.2 41 26-66 254-299 (332)
144 COG0245 IspF 2C-methyl-D-eryth 20.2 52 0.0011 20.0 0.8 28 2-29 111-138 (159)
145 PRK10344 DNA-binding transcrip 20.2 50 0.0011 18.2 0.6 19 4-22 50-68 (92)
146 PF12482 DUF3701: Phage integr 20.2 85 0.0018 17.4 1.6 17 56-72 32-48 (96)
No 1
>PRK08172 putative acyl carrier protein IacP; Validated
Probab=99.90 E-value=3.5e-24 Score=116.03 Aligned_cols=74 Identities=24% Similarity=0.327 Sum_probs=71.0
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG 74 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 74 (75)
+++++++++.+++++++++++++|.+++||||+++++++..+|++||++||.+++.++.|++++++|+.+++++
T Consensus 7 ~~v~~iiae~l~v~~~~i~~d~~l~~dL~~DSld~v~lv~~lEe~F~I~i~~~d~~~i~Tv~di~~~v~~~~~~ 80 (82)
T PRK08172 7 ARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDIVFGLSEEFDISCNENDLPDMTTFADICRVVKKSLES 80 (82)
T ss_pred HHHHHHHHHHHCCCHHHCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHCCCHHHHHHHHHHHHhc
Confidence 47899999999999999999999998999999999999999999999999999999999999999999998764
No 2
>PRK05350 acyl carrier protein; Provisional
Probab=99.88 E-value=8.3e-23 Score=110.48 Aligned_cols=72 Identities=22% Similarity=0.364 Sum_probs=69.0
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
++++++++.+++++.+++++++|.+++||||+++++++.++|++||+++|++++.++.|++++++||.++++
T Consensus 10 ~v~~ii~~~~~~~~~~i~~d~~l~~dlg~DSld~veli~~lE~~fgI~i~~~~~~~~~Tv~dlv~~v~~~~~ 81 (82)
T PRK05350 10 RLRAILVELFEIDPEDITPEANLYEDLDLDSIDAVDLVVHLQKLTGKKIKPEEFKSVRTVQDVVDAVERLLK 81 (82)
T ss_pred HHHHHHHHHhCCCHHHCCCCccchhhcCCCHHHHHHHHHHHHHHHCCccCHHHHhhcCcHHHHHHHHHHHhc
Confidence 688999999999999999999988899999999999999999999999999999999999999999998875
No 3
>PRK05883 acyl carrier protein; Validated
Probab=99.88 E-value=1.7e-22 Score=111.27 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=69.9
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
++++++|++.++++++.++++++|.+++||||+++++++..+|++||++||++++.++.||+++++||.++++
T Consensus 17 ~~l~~iia~~l~v~~~~I~~d~~l~~dlg~DSL~~v~lv~~lE~~fgI~i~~ee~~~~~TV~dl~~~v~~~~~ 89 (91)
T PRK05883 17 ATLLSILRDDLNVDLTRVTPDARLVDDVGLDSVAFAVGMVAIEERLGVALSEEDLLSCDTVGDLEAAIAAKVR 89 (91)
T ss_pred HHHHHHHHHHhCCChhhCCCCCchhhccCCChHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHcc
Confidence 3689999999999999999999998899999999999999999999999999999999999999999998865
No 4
>CHL00124 acpP acyl carrier protein; Validated
Probab=99.87 E-value=1.8e-22 Score=108.95 Aligned_cols=75 Identities=36% Similarity=0.629 Sum_probs=70.5
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcCC
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN 75 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~ 75 (75)
+++++++++.++++++.++++++|.+++||||+++++++..+|++||+++|++++.+++|++++++||.++++++
T Consensus 8 ~~l~~ii~~~~~~~~~~i~~d~~l~~dlg~DSl~~~eli~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~ 82 (82)
T CHL00124 8 EKVQSIVAEQLGIEKSEVTLDANFTRDLGADSLDVVELVMAIEEKFDIEIPDEDAEKISTLQEAVDFISQKINKK 82 (82)
T ss_pred HHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCccCHHHHHHcCCHHHHHHHHHHHhccC
Confidence 368899999999999999999999877999999999999999999999999999999999999999999988764
No 5
>TIGR00517 acyl_carrier acyl carrier protein. S (Ser) at position 37 in the seed alignment, in the motif DSLD, is the phosphopantetheine attachment site.
Probab=99.87 E-value=3.9e-22 Score=106.50 Aligned_cols=72 Identities=46% Similarity=0.663 Sum_probs=68.0
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
+++++++++.+++++.+++++++|.+++||||+++++++..+|++||+++|++++.++.|++++++||.+++
T Consensus 6 ~~l~~il~~~~~~~~~~i~~~~~l~~dlglDSl~~veli~~lE~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 77 (77)
T TIGR00517 6 EKVKAIIKEQLNVDEDQVTPDASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKIATVGDAVDYIEENQ 77 (77)
T ss_pred HHHHHHHHHHHCCCHHHCCCCcchhhhcCCcHHHHHHHHHHHHHHHCCCCCHHHHHHCCcHHHHHHHHHhcC
Confidence 368999999999999999999999889999999999999999999999999999999999999999998753
No 6
>PRK07117 acyl carrier protein; Validated
Probab=99.86 E-value=4e-22 Score=107.28 Aligned_cols=71 Identities=21% Similarity=0.322 Sum_probs=67.2
Q ss_pred ChHHHHHHhhh-CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 1 DPIISVIKNFQ-NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 1 ~~v~~ii~~~~-~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
++|++++++++ ++++++++++++|. +||+||++++++++.+|++||++||.+++.+++|++++++|+.+++
T Consensus 8 ~~v~~ii~e~~p~i~~~~I~~~~~l~-DLg~DSlD~veiv~~led~f~i~I~~~~~~~i~Tv~d~v~~i~~~~ 79 (79)
T PRK07117 8 DILVRHIREVLPDLDQHQFQPEDSLV-DLGANSMDRAEIVIMTLESLSLKIPLVEFAGAKNIGELADLLYAKL 79 (79)
T ss_pred HHHHHHHHHHcCCCCHHHCCCCCChh-hcCCChHHHHHHHHHHHHHHCCccCHHHHHhcCCHHHHHHHHHHhC
Confidence 37899999999 79999999999996 8999999999999999999999999999999999999999998863
No 7
>PRK12449 acyl carrier protein; Provisional
Probab=99.86 E-value=1e-21 Score=105.59 Aligned_cols=72 Identities=19% Similarity=0.487 Sum_probs=68.5
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
+++++++++.+++++..++++++|.+++||||++++++++++|++||+.+|+.++.++.|++++++|+.+++
T Consensus 8 ~~l~~il~~~~~~~~~~i~~~~~l~~dlg~DSl~~~~li~~lE~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 79 (80)
T PRK12449 8 ERLINLIQKQRSYLSLAITEQTHLKDDLAVDSIELVEFIINVEDEFHIAIPDEDVEDMVSMGDLLDYLVQRL 79 (80)
T ss_pred HHHHHHHHHHhCCCccccCCCCcHHHHcCCcHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHHHhc
Confidence 368899999999999999999999889999999999999999999999999999999999999999998875
No 8
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.86 E-value=3.5e-22 Score=114.97 Aligned_cols=74 Identities=51% Similarity=0.811 Sum_probs=70.5
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG 74 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 74 (75)
++|..++..+..++++.++++++|..|||+|||+.||+++++|++||++||+.+..++.|+++.++||..+...
T Consensus 56 ~RVl~VVk~~dki~~~k~~~~s~f~~DLGlDSLD~VEiVMAlEEEFgiEIpd~dAdki~t~~da~~yI~~~~d~ 129 (131)
T KOG1748|consen 56 DRVLDVVKKFDKIDPSKLTTDSDFFKDLGLDSLDTVEIVMALEEEFGIEIPDEDADKIKTVRDAADYIADKPDV 129 (131)
T ss_pred HHHHHHHHHhhcCCccccchhhHHHHhcCCcccccchhhhhhHHHhCCccCcchhhhhCCHHHHHHHHHhcccc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999988654
No 9
>PRK07639 acyl carrier protein; Provisional
Probab=99.85 E-value=3.1e-21 Score=105.25 Aligned_cols=73 Identities=10% Similarity=0.288 Sum_probs=68.1
Q ss_pred ChHHHHHHhhhCCCC-CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchh--hhhccHHHHHHHHHhhhc
Q 042770 1 DPIISVIKNFQNVDP-FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEA--DIINTINMAVNFTASHCQ 73 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~-~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~--~~~~tv~~l~~~i~~~~~ 73 (75)
++|++++++.++.++ ++++++++|.+++|+||++++++++++|++||++||++++ .++.|++++++||.++++
T Consensus 8 ~~i~~il~e~l~~~~~~~i~~d~~l~edL~lDSld~velv~~lE~~fgi~i~d~~~~~~~~~Tv~~l~~~i~~~~~ 83 (86)
T PRK07639 8 NAVLKIMEEKLELKNVTHLEETMRLNEDLYIDSVMMLQLIVYIEMDVKLCVPEDEVDPKAFLTVGSLLDFMEELQP 83 (86)
T ss_pred HHHHHHHHHHhCCCccccCCCCCCcccccCCChHHHHHHHHHHHHHHCCccCHHHccHHHhCCHHHHHHHHHHhhc
Confidence 368999999999985 8899999999999999999999999999999999999987 799999999999998764
No 10
>PTZ00171 acyl carrier protein; Provisional
Probab=99.85 E-value=1.8e-21 Score=115.11 Aligned_cols=75 Identities=36% Similarity=0.670 Sum_probs=70.7
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcCC
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQGN 75 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~~ 75 (75)
+++++++++.++++++.++++++|.+++|||||+++++++.+|++||+.||++++.++.|++++++||.++.+++
T Consensus 73 ~~l~eiiae~l~vd~~~I~~ds~~~~dLg~DSLd~veLv~~LEdeFgI~Ipded~~~i~TV~dlvd~V~~~~~~~ 147 (148)
T PTZ00171 73 TRVKKVVKNFEKVDASKITPESNFVKDLGADSLDVVELLIAIEQEFNLTIPDHDAEKIKTVQDAIDYIEQNNMAK 147 (148)
T ss_pred HHHHHHHHHHhCCCHhhCCCCcchhhhcCCCHHHHHHHHHHHHHHHCCccCHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 368899999999999999999999889999999999999999999999999999999999999999999987653
No 11
>PRK05828 acyl carrier protein; Validated
Probab=99.85 E-value=3e-21 Score=104.90 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=67.5
Q ss_pred ChHHHHHHh-hhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770 1 DPIISVIKN-FQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG 74 (75)
Q Consensus 1 ~~v~~ii~~-~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 74 (75)
+++++++++ .++++++.++++++|. +||+||++++++++++|++||++||.+++.++.|++++++||.+++++
T Consensus 8 ~~i~~ii~e~~~~~~~d~i~~~~~~~-dLg~DSLd~velv~~lE~~f~I~i~~e~~~~i~Tv~d~~~~v~~~~~~ 81 (84)
T PRK05828 8 LKIKEIAKKKNFAVTLDESNINKPYR-ELKIDSLDMFSIIVSLESEFNIEFSDEKLMKLKNLADLILEVKELKKQ 81 (84)
T ss_pred HHHHHHHHHhccCCCcccccCCCCHH-hcCCCHHHHHHHHHHHHHHHCCCcCHHHHHhCCCHHHHHHHHHHHHhc
Confidence 368889997 6889999999999995 899999999999999999999999999999999999999999987754
No 12
>COG0236 AcpP Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.84 E-value=7.2e-21 Score=102.45 Aligned_cols=71 Identities=44% Similarity=0.660 Sum_probs=67.7
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
++++++++.++.++.+++++++|..++|+||+++++|++.||++||++||++++.++.|++++++||.++.
T Consensus 9 ~i~~ii~e~l~~~~~~i~~~~~~~~dlg~DSld~veLi~~lE~~f~i~i~~e~~~~~~tv~~l~~~i~~~~ 79 (80)
T COG0236 9 RVKDIIAEQLGVDEEEITTEASFVEDLGLDSLDLVELVMALEEEFGIEIPDEELENIKTVGDLVDYIEELL 79 (80)
T ss_pred HHHHHHHHHhCCchhhcCcccccccccCccHHHHHHHHHHHHHHHCCcCCHHHHHHHHhHHHHHHHHHHhc
Confidence 68899999999999999999999867999999999999999999999999999999999999999999865
No 13
>PRK06508 acyl carrier protein; Provisional
Probab=99.84 E-value=5.7e-21 Score=105.47 Aligned_cols=74 Identities=23% Similarity=0.387 Sum_probs=67.5
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh-----------hhccHHHHHHHHH
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD-----------IINTINMAVNFTA 69 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~-----------~~~tv~~l~~~i~ 69 (75)
++|++++++.++++++.++|++++.++||||||++++++..+|++|||+||.+++. ++.|+++++.+|.
T Consensus 6 ekv~~Ilae~~~vd~~~It~ds~~~edL~~DSLd~veli~~lE~eFgI~i~~ee~~~~~n~~~~~~~~~~~l~~~~~~i~ 85 (93)
T PRK06508 6 DKVADIIAETSDIPRDTITPESHTIDDLGIDSLDFLDIVFAIDKAFGIKLPLEQWTQEVNEGKVPTEEYFVLKNLCAKID 85 (93)
T ss_pred HHHHHHHHHHhCCCHHHCCCCCcchhccCCCHHHHHHHHHHHHHHHCCccCHHHHHHhhcccccccchHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999875 5668889999998
Q ss_pred hhhcC
Q 042770 70 SHCQG 74 (75)
Q Consensus 70 ~~~~~ 74 (75)
+..++
T Consensus 86 ~~~~~ 90 (93)
T PRK06508 86 ELVAA 90 (93)
T ss_pred HHHHh
Confidence 87665
No 14
>PRK00982 acpP acyl carrier protein; Provisional
Probab=99.83 E-value=1e-20 Score=101.16 Aligned_cols=71 Identities=45% Similarity=0.659 Sum_probs=67.6
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
++++++++.++++++.++++++|..++||||+++++++..+|++||+++|++++.++.|++++++++.+++
T Consensus 7 ~l~~~l~~~l~~~~~~i~~d~~l~~dlglDSl~~~~li~~le~~f~i~i~~~~~~~~~ti~~l~~~l~~~~ 77 (78)
T PRK00982 7 KVKKIIVEQLGVDEEEVTPEASFVDDLGADSLDTVELVMALEEEFGIEIPDEDAEKIKTVGDAVDYIEKHQ 77 (78)
T ss_pred HHHHHHHHHHCCCHHHCCCCcchHhhcCCCHHHHHHHHHHHHHHHCCCcCHHHHHHcCcHHHHHHHHHHhc
Confidence 68899999999999999999999669999999999999999999999999999999999999999998875
No 15
>PRK09184 acyl carrier protein; Provisional
Probab=99.82 E-value=4.4e-20 Score=101.26 Aligned_cols=73 Identities=21% Similarity=0.485 Sum_probs=64.5
Q ss_pred ChHHHHHHhhhCC---CCCCCCCCCCc-ccccCcchhHHHHHHHHHHHHhCCcCCcchh---hhhccHHHHHHHHHhhhc
Q 042770 1 DPIISVIKNFQNV---DPFKVTTNGHF-QIDLGLDNLDFVEIVMALKEEFGFEIPDNEA---DIINTINMAVNFTASHCQ 73 (75)
Q Consensus 1 ~~v~~ii~~~~~~---~~~~i~~~~~l-~~dlglDSl~~v~l~~~le~~f~i~i~~~~~---~~~~tv~~l~~~i~~~~~ 73 (75)
++|+++|++.+++ ++++|+++++| .++||+||+++++|++.+|++||++||+++. ..++||+++++||.++.+
T Consensus 9 ~~l~~~I~e~l~~~~i~~~~I~~d~~l~~~dLglDSld~velv~~lE~~fgi~i~~~~~~~~~~~~TV~~l~~~I~~~~~ 88 (89)
T PRK09184 9 RELAELIVEELNLEDVQPESIDADAPLYGEGLGLDSIDILEIALVISKRYGFQLRSDNPDNQRIFASLRALAAYVAAHRT 88 (89)
T ss_pred HHHHHHHHHHHCCCCCCHHHCCCCcccccccCCCcHHHHHHHHHHHHHHHCCcCCCcchhhhhccCCHHHHHHHHHHhhc
Confidence 3688999999985 89999999997 4479999999999999999999999987654 568999999999998754
No 16
>PRK07081 acyl carrier protein; Provisional
Probab=99.79 E-value=2.6e-19 Score=97.08 Aligned_cols=72 Identities=19% Similarity=0.409 Sum_probs=64.9
Q ss_pred ChHHHHHHhhh--CCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhhc
Q 042770 1 DPIISVIKNFQ--NVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHCQ 73 (75)
Q Consensus 1 ~~v~~ii~~~~--~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~~ 73 (75)
+++++++.+.+ +++++.++++++|. ++|+||+++++++..+|++||++||++++. ++.|+++++++|.++++
T Consensus 3 ~~i~~ii~~~~~~~~~~~~i~~d~~l~-dlGlDSl~~v~li~~lE~~f~I~i~~~~~~~~~~~tv~~l~~~V~~~~~ 78 (83)
T PRK07081 3 NTIRTILKKVAKLEVPIDSIADDADLY-EAGLSSLATVQLMLAIEDAFDIEIPDEMLNRKLFASIDALAGAVTQLQD 78 (83)
T ss_pred HHHHHHHHHHHcCCCCHHhcCCCCCHh-hcCCCHHHHHHHHHHHHHHhCCcCCHHHcCHHHhccHHHHHHHHHHHHh
Confidence 47899999985 45678999999996 899999999999999999999999999984 59999999999998765
No 17
>PF00550 PP-binding: Phosphopantetheine attachment site; InterPro: IPR006163 Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups []. The amino-terminal region of the ACP proteins is well defined and consists of alpha four helices arranged in a right-handed bundle held together by interhelical hydrophobic interactions. The Asp-Ser-Leu (DSL)motif is conserved in all of the ACP sequences, and the 4'-PP prosthetic group is covalently linked via a phosphodiester bond to the serine residue. The DSL sequence is present at the amino terminus of helix II, a domain of the protein referred to as the recognition helix and which is responsible for the interaction of ACPs with the enzymes of type II fatty acid synthesis [].; GO: 0048037 cofactor binding; PDB: 3EJB_E 3EJE_G 1L0I_A 2FHS_C 3EJD_E 2FAE_B 2FAD_B 2FAC_B 2K94_A 1ACP_A ....
Probab=99.79 E-value=4.5e-19 Score=91.88 Aligned_cols=67 Identities=34% Similarity=0.567 Sum_probs=64.4
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
|+|++++++.+++++.+++++++|. ++|+||+.+++++..++++||+.+|..++.+++|+++++++|
T Consensus 1 e~l~~~~~~~l~~~~~~i~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~i~~~~~~~~~ti~~l~~~i 67 (67)
T PF00550_consen 1 EQLREIIAEVLGVDPEEIDPDTDFF-DLGLDSLDAIELVSELEEEFGIKIPPSDLFEHPTIRDLAEYI 67 (67)
T ss_dssp HHHHHHHHHHHTSSGGCTSTTSBTT-TTTSSHHHHHHHHHHHHHHHTSSTTHHHHCTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHCcCHhhCCCCCCHH-HhCCchHHHHHHHHHHHHHHcCCCCHHHHHcCCCHHHHHhHC
Confidence 4789999999999999999999997 899999999999999999999999999999999999999986
No 18
>PRK05087 D-alanine--poly(phosphoribitol) ligase subunit 2; Validated
Probab=99.77 E-value=1.4e-18 Score=93.22 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=65.3
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh--hhccHHHHHHHHHhhh
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD--IINTINMAVNFTASHC 72 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~--~~~tv~~l~~~i~~~~ 72 (75)
++|++++.+.++.++.++++++++.++.++||+++++|++.+|++||++||++++. ++.|++++++||.+.+
T Consensus 5 ~~I~~iL~~~~~~~~~~~~~d~~l~~~g~lDSl~~veli~~lE~~fgi~i~~~e~~~~~f~Tv~~i~~~v~~l~ 78 (78)
T PRK05087 5 EQVLDILEELTGEDIVSENMDEDLFEEGILDSMGTVELLVELENRFDIEVPVSEFDRDDWNTPNKIIAKVEELQ 78 (78)
T ss_pred HHHHHHHHHHhCCChhccCCccchhhccCcchHHHHHHHHHHHHHhCCccChHhcCHHhhcCHHHHHHHHHHcC
Confidence 47899999999998888999999987777999999999999999999999999984 4999999999998763
No 19
>TIGR01688 dltC D-alanine--poly(phosphoribitol) ligase, subunit 2. This protein is part of the teichoic acid operon in gram-positive organisms. Gram positive organisms incorporate teichoic acid in their cell walls, and in the fatty acid residues of the glycolipid component of the outer layer of the cytoplasmic membrane. This gene, dltC, encodes the alanyl carrier protein.
Probab=99.65 E-value=4.4e-16 Score=82.47 Aligned_cols=69 Identities=19% Similarity=0.361 Sum_probs=62.2
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCc-chhHHHHHHHHHHHHhCCcCCcchh--hhhccHHHHHHHHHh
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGL-DNLDFVEIVMALKEEFGFEIPDNEA--DIINTINMAVNFTAS 70 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlgl-DSl~~v~l~~~le~~f~i~i~~~~~--~~~~tv~~l~~~i~~ 70 (75)
++|++++++..|.+.....++++|. +.|+ ||+..++|+..||++|||++|+.++ .+|.|++.++++|++
T Consensus 2 e~i~eIL~~i~~~~~~~~~~d~~L~-~~GllDS~~~v~Li~~lE~ef~I~i~~~el~~enf~S~~~i~~~v~~ 73 (73)
T TIGR01688 2 NGVLDILAEVTGSDDVKENPDLELF-EEGLLDSFGTVQLLLEIQNQFDIDVPISEFDRDEWDTPNKIVAKLEE 73 (73)
T ss_pred hHHHHHHHHHhcCcccccCccHHHH-HccchhHHHHHHHHHHHHHHhCCccCHHHcCHHHhcCHHHHHHHHhC
Confidence 5799999999887766679999998 6775 9999999999999999999999998 899999999998863
No 20
>PF14573 PP-binding_2: Acyl-carrier; PDB: 3CE7_A.
Probab=99.40 E-value=9.2e-13 Score=71.41 Aligned_cols=71 Identities=31% Similarity=0.490 Sum_probs=45.9
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCc-----ccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHF-----QIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l-----~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
++..++.+++.-. .++++.+.+ .+++.||||+.++++..+|++|++.||++...+++|++++++|+.++.+
T Consensus 14 ~i~g~~kkyl~~~-~~it~~skL~e~rt~e~r~wD~LDtVefvldVEe~F~V~IpDE~aDN~~tvqeIadfvv~~r~ 89 (96)
T PF14573_consen 14 YILGMLKKYLSEG-EEITYTSKLEESRTKEDRAWDSLDTVEFVLDVEEEFDVTIPDETADNIKTVQEIADFVVQERQ 89 (96)
T ss_dssp HHHHHHHTTB-TT-----TTS-GGGSBBTTSSB--HHHHHHHHHHHHHHHT----HHHHTT--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-CccChhhhhHHhccccccccchhhhHHHHHhHHHHcCcccCccccchhhHHHHHHHHHHHHHH
Confidence 4556666665321 234443333 4689999999999999999999999999999999999999999987654
No 21
>smart00823 PKS_PP Phosphopantetheine attachment site. Phosphopantetheine (or pantetheine 4' phosphate) is the prosthetic group of acyl carrier proteins (ACP) in some multienzyme complexes where it serves as a 'swinging arm' for the attachment of activated fatty acid and amino-acid groups PUBMED:5321311.
Probab=99.11 E-value=4.5e-10 Score=58.86 Aligned_cols=68 Identities=21% Similarity=0.250 Sum_probs=59.8
Q ss_pred HHHHHHhhhCCCCCC-CCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 3 IISVIKNFQNVDPFK-VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 3 v~~ii~~~~~~~~~~-i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
+...+...++..... +..+++|. ++|+||+..+++...+++.||+.+|...+....|+..+++++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~l~-~~g~dSl~~~~~~~~l~~~~~~~i~~~~~~~~~t~~~l~~~i~~~ 85 (86)
T smart00823 17 VREQVAAVLGHAAAEAIDPDRPFR-DLGLDSLTAVELRNRLEAATGLRLPATLVFDHPTPAALAEHLAAE 85 (86)
T ss_pred HHHHHHHHHCCCccccCCCCCCHH-HcCchHHHHHHHHHHHHHHHCCCCChHHHHcCCCHHHHHHHHHHh
Confidence 556677777776665 48899996 899999999999999999999999999999999999999998765
No 22
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.10 E-value=1.5e-10 Score=90.03 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=67.8
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC--CcCCcchhhhhccHHHHHHHHHhhh
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG--FEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~--i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
+++++++++.+|++.+.++++.+|.+|||+||+..+++++.++++|+ .+++++++.++.|++++++|+..+.
T Consensus 1310 ~~vl~vvae~tgyp~e~L~~d~~le~DLGiDSI~~vEil~~le~~f~~~~~i~~e~l~~l~Tl~div~~i~~~~ 1383 (2582)
T TIGR02813 1310 NVMLEVVADKTGYPTEMLELEMDMEADLGIDSIKRVEILGTVQDTLPDLPELSPEDLAECRTLGEIVSYMQSKV 1383 (2582)
T ss_pred HHHHHHHHHHhCCCHHHcCcccCchhhcCCCHHHHHHHHHHHHHhcCCcCCCChhHhhhcccHHHHHHHHhhcc
Confidence 36889999999999999999999999999999999999999999999 8899999999999999999998654
No 23
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.04 E-value=9.4e-10 Score=57.66 Aligned_cols=71 Identities=11% Similarity=0.183 Sum_probs=65.0
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG 74 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 74 (75)
-+++.+++.++..+.+++++.++. +.|+||+-+|.+.....+. |..+...++....|++...+.+..+.+.
T Consensus 2 ~Lr~~~~~Ll~e~~~~l~dqeNLi-~~GLDSiR~M~L~~~wR~~-G~~i~F~~La~~PTl~aW~qLl~~~~~~ 72 (74)
T COG3433 2 ALREQIAELLGESVEELDDQENLI-DYGLDSIRMMALLERWRKR-GADIDFAQLAANPTLAAWWQLLSTRSKQ 72 (74)
T ss_pred cHHHHHHHHHcCChhhcCchhhHH-HhchhHHHHHHHHHHHHHc-CCcccHHHHHhCccHHHHHHHHHhcccC
Confidence 467888999998999999999997 9999999999999999886 9999999999999999999999887654
No 24
>PRK06060 acyl-CoA synthetase; Validated
Probab=99.01 E-value=8.7e-10 Score=77.33 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=63.6
Q ss_pred hHHHHHHhhhCCC-CCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 2 PIISVIKNFQNVD-PFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 2 ~v~~ii~~~~~~~-~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
.++..+++.++.+ +..++++.+|. ++|+|||+.+++..+|++.||+.+|...+.+..|+..+++++.+.+
T Consensus 549 ~v~~~~a~vl~~~~~~~i~~~~~f~-~lG~dSl~av~l~~~l~~~~g~~l~~~~~~~~pt~~~la~~l~~~~ 619 (705)
T PRK06060 549 AVCAEAAKMLGEPDPWSVDQDLAFS-ELGFDSQMTVTLCKRLAAVTGLRLPETVGWDYGSISGLAQYLEAEL 619 (705)
T ss_pred HHHHHHHHHhCCCChhhCCCCCChh-hcCchHHHHHHHHHHHHHHhCCCCCceeeecCCCHHHHHHHHHHHh
Confidence 3567778888885 67799999997 9999999999999999999999999999999999999999998765
No 25
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=98.90 E-value=4.5e-09 Score=78.02 Aligned_cols=70 Identities=16% Similarity=0.158 Sum_probs=64.6
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
.+.+++++.++.++..++++++|. ++|.|||.+++++..|++.||+.+|..++.+..|++++++++.+..
T Consensus 852 ~l~~~~~~vl~~~~~~i~~~~~ff-~lGgdSL~a~~l~~~l~~~~~~~l~~~~i~~~~ti~~la~~l~~~~ 921 (1389)
T TIGR03443 852 EIRDLWLELLPNRPATISPDDSFF-DLGGHSILATRMIFELRKKLNVELPLGLIFKSPTIKGFAKEVDRLK 921 (1389)
T ss_pred HHHHHHHHHhCCCccccCcCcchh-hcCccHHHHHHHHHHHHHHhCCCcCHHHHhcCCCHHHHHHHHHhhh
Confidence 467888999998878899999997 9999999999999999999999999999999999999999997643
No 26
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.70 E-value=3.8e-08 Score=72.53 Aligned_cols=67 Identities=15% Similarity=0.256 Sum_probs=62.3
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
.+.+++++.++++ .+.++++|. ++|.|||.++++...+++.||+.+|..++....|++++++++.+.
T Consensus 982 ~l~~~~~~~l~~~--~~~~~~~ff-~lGg~Sl~a~~l~~~l~~~~~~~l~~~~~~~~pti~~la~~l~~~ 1048 (1296)
T PRK10252 982 IIAAAFSSLLGCD--VVDADADFF-ALGGHSLLAMKLAAQLSRQFARQVTPGQVMVASTVAKLATLLDAE 1048 (1296)
T ss_pred HHHHHHHHHhCCC--CCCCCcCHH-HcCCChHHHHHHHHHHHHHhCCCCCHHHHhcCCCHHHHHHHHhcc
Confidence 4778899999886 789999997 999999999999999999999999999999999999999999765
No 27
>PRK12467 peptide synthase; Provisional
Probab=98.54 E-value=1.9e-07 Score=75.09 Aligned_cols=66 Identities=15% Similarity=0.313 Sum_probs=61.4
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS 70 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~ 70 (75)
.+.++++++++++ .+..+.+|+ ++|.|||.++.++..+++.||+++|..++.+..|++++++++..
T Consensus 3609 ~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~ 3674 (3956)
T PRK12467 3609 QLAAIWADVLGVE--QVGVTDNFF-ELGGDSLLALQVLSRIRQSLGLKLSLRDLMSAPTIAELAGYSPL 3674 (3956)
T ss_pred HHHHHHHHHhCCC--CCCCCcchh-cccchHHHHHHHHHHHHHHhCCCCCHHHHHhCCCHHHHHHHHhh
Confidence 5788899999985 589999997 99999999999999999999999999999999999999999865
No 28
>PRK12316 peptide synthase; Provisional
Probab=98.48 E-value=4.5e-07 Score=74.20 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=61.4
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
++.++++++++++ .+..+.+|+ ++|.|||.++.|+..+++.||++++..++....|++++++++...
T Consensus 5076 ~l~~i~~~vL~~~--~i~~~~~Ff-~lGgdSl~a~~l~~~l~~~~g~~l~~~~lf~~pti~~la~~~~~~ 5142 (5163)
T PRK12316 5076 QVAAIWAEVLQLE--RVGLDDNFF-ELGGHSLLAIQVTSRIQLELGLELPLRELFQTPTLAAFVELAAAA 5142 (5163)
T ss_pred HHHHHHHHHhCCC--CCCCCCChh-hccchHHHHHHHHHHHHHHcCCCCCHHHHHcCCCHHHHHHHHHhc
Confidence 4678889999875 589999997 999999999999999999999999999999999999999999754
No 29
>PRK05691 peptide synthase; Validated
Probab=98.47 E-value=4.1e-07 Score=73.62 Aligned_cols=67 Identities=13% Similarity=0.226 Sum_probs=61.9
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
++.+++++.++++ .+..+.+|+ ++|.|||.++.++..+++.||+.+|..++....|++++++++...
T Consensus 4245 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGg~Sl~a~~l~~~~~~~~~~~~~~~~~f~~~t~~~la~~~~~~ 4311 (4334)
T PRK05691 4245 TLATIWADVLKVE--RVGVHDNFF-ELGGHSLLATQIASRVQKALQRNVPLRAMFECSTVEELAEYIEGL 4311 (4334)
T ss_pred HHHHHHHHHhCCC--cCCCCCchh-hcCCcHHHHHHHHHHHHHHhCCCccHHHHhcCCCHHHHHHHHhhh
Confidence 5788999999975 589999998 999999999999999999999999999999999999999999753
No 30
>PRK12467 peptide synthase; Provisional
Probab=98.44 E-value=4.8e-07 Score=72.97 Aligned_cols=67 Identities=15% Similarity=0.259 Sum_probs=61.7
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
.+.+++++.++++ .+..+.+|+ ++|.|||.++.++..+++.||+.++..++.+..|++++++++...
T Consensus 1034 ~l~~i~~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~lf~~~t~~~la~~~~~~ 1100 (3956)
T PRK12467 1034 RLAAIWADVLKVE--RVGLTDNFF-ELGGHSLLATQVISRVRQRLGIQVPLRTLFEHQTLAGFAQAVAAQ 1100 (3956)
T ss_pred HHHHHHHHHhCCC--CCCCCCCch-hccCccHHHHHHHHHHHHHhCCCcchHHhhccchHHHHHHHhhhh
Confidence 4678899999874 689999998 999999999999999999999999999999999999999998764
No 31
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=98.44 E-value=2.5e-07 Score=72.74 Aligned_cols=71 Identities=20% Similarity=0.291 Sum_probs=65.3
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC--CcCCcchhhhhccHHHHHHHHHhhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG--FEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~--i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
.+.+++++.+|.+.+.++++.++..|||+||+..++++..++++|+ .+++++++..++|++++++|+.+..
T Consensus 1215 ~~l~vvae~tgyp~e~L~ld~d~eaDLgIDSIkrveil~~l~~~~~~~~e~~pe~l~~~rTl~~iv~~~~~~~ 1287 (2582)
T TIGR02813 1215 VMMEVVAEKTGYPTEMLELEMDMEADLGIDSIKRVEILGSVQEIINDLPELNPEDLAELRTLGEIVNYMQSKV 1287 (2582)
T ss_pred HHHHHHHhhccCChHhcccccccccccCcchhhhHHhhhhhhhhccCCCCCChhhhcccccHHHHHHhhcccc
Confidence 4678999999999999999999999999999999999999999998 7888999999999999999986543
No 32
>PRK05691 peptide synthase; Validated
Probab=98.42 E-value=6.4e-07 Score=72.57 Aligned_cols=67 Identities=16% Similarity=0.166 Sum_probs=62.0
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
++.+++++.+|++ .+..+++|+ ++|.|||.++.|+..++++||+.++..++.+..|+++++.++.+.
T Consensus 1642 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGGdSl~a~~l~~~~~~~~~~~l~~~~~f~~~tl~~la~~i~~~ 1708 (4334)
T PRK05691 1642 QIAAIWREVLGLP--RVGLRDDFF-ALGGHSLLATQIVSRTRQACDVELPLRALFEASELGAFAEQVARI 1708 (4334)
T ss_pred HHHHHHHHHhCCC--CCCCCCchH-HhcccHHHHHHHHHHHHHHhCCCcchhhhhcCCcHHHHHHHhhhh
Confidence 5778899999986 688999998 999999999999999999999999999999999999999998764
No 33
>PRK12316 peptide synthase; Provisional
Probab=98.31 E-value=1.4e-06 Score=71.54 Aligned_cols=67 Identities=19% Similarity=0.268 Sum_probs=61.1
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
++.+++++.++++ .+..+.+|. ++|.|||.+++++..+++.||+.++..++.+..|+++++..+...
T Consensus 2520 ~l~~iw~~vL~~~--~i~~~d~Ff-~lGgdSl~a~~l~~~~~~~~g~~l~~~~~f~~~ti~~la~~l~~~ 2586 (5163)
T PRK12316 2520 RLAAIWQAVLKVE--QVGLDDHFF-ELGGHSLLATQVVSRVRQDLGLEVPLRILFERPTLAAFAASLESG 2586 (5163)
T ss_pred HHHHHHHHHhCCC--ccCCCCchh-hhcchHHHHHHHHHHHHHHhCCCcCHHHHhhCccHHHHhhhhhhh
Confidence 4678889999885 588999997 999999999999999999999999999999999999999988654
No 34
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=98.01 E-value=4.5e-06 Score=62.81 Aligned_cols=60 Identities=30% Similarity=0.411 Sum_probs=51.2
Q ss_pred HHHHHHhhhCC-CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHH
Q 042770 3 IISVIKNFQNV-DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMA 64 (75)
Q Consensus 3 v~~ii~~~~~~-~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l 64 (75)
++..|+.++|+ |...++.++++. |||+|||+.+|+-..||++|++.++..++.. -|++.+
T Consensus 2009 LiatiA~IlGlrD~~~vn~~asLa-DLGlDSLMsvEikQtLER~~dlVLS~qEiRq-LT~~kL 2069 (2376)
T KOG1202|consen 2009 LIATIAHILGLRDLKAVNDDASLA-DLGLDSLMSVEIKQTLEREFDLVLSAQEIRQ-LTLRKL 2069 (2376)
T ss_pred HHHHHHHHhcchhHhhccCCCchh-hccchhhhhHHHHHHHhhhhceeeeHHHHHH-HHHHHH
Confidence 56788899998 678999999996 9999999999999999999999999988733 344444
No 35
>PF07377 DUF1493: Protein of unknown function (DUF1493); InterPro: IPR010862 This family consists of several bacterial proteins of around 115 residues in length. Members of this family are largely found in Salmonella and Yersinia species and several have been described as being putative cytoplasmic proteins. The function of this family is unknown.
Probab=97.79 E-value=6.9e-05 Score=42.42 Aligned_cols=55 Identities=27% Similarity=0.375 Sum_probs=48.6
Q ss_pred ChHHHHHHhhhCC----CCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchh
Q 042770 1 DPIISVIKNFQNV----DPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 1 ~~v~~ii~~~~~~----~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~ 55 (75)
++|++.+.+..|. ....+++++++..|||++.-++.+++....++|+|.+..-++
T Consensus 6 ~~I~~fi~~~~~~~~~~~~~~it~dt~L~~DL~~~~dda~elm~~f~~~F~Vd~~~f~~ 64 (111)
T PF07377_consen 6 QEIIEFIREENGPYLFFKKKPITPDTDLQEDLGLDGDDAEELMEDFFERFNVDLSDFDF 64 (111)
T ss_pred HHHHHHHHHHcCcccccCcccCCCCCcHHHhcCCCHHHHHHHHHHHHHHhCCCcCccCH
Confidence 3688889999887 578999999999899999999999999999999999766544
No 36
>PF10501 Ribosomal_L50: Ribosomal subunit 39S; InterPro: IPR018305 This entry represents the L50 protein from the mitochondrial 39S ribosomal subunit. L50 appears to be a secondary RNA-binding protein []. The 39S ribosomal protein appears to be a subunit of one of the larger mitochondrial 66S or 70S units []. Under conditions of ethanol-stress in rats the larger subunit is largely dissociated into its smaller components [].; GO: 0005739 mitochondrion
Probab=96.55 E-value=0.02 Score=32.45 Aligned_cols=67 Identities=24% Similarity=0.308 Sum_probs=47.3
Q ss_pred HHHHHHhhhCCCCCCC-CCCCCcccccCc-chhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770 3 IISVIKNFQNVDPFKV-TTNGHFQIDLGL-DNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS 70 (75)
Q Consensus 3 v~~ii~~~~~~~~~~i-~~~~~l~~dlgl-DSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~ 70 (75)
+.+..++.++.+.... ..+..+. +..+ |--.--.+..+|.+.+|..||+..+..+.|++++.+|+.+
T Consensus 13 i~e~~~e~~~~~~~~~~~~~~~~~-~~~l~D~~~KF~~lKrl~~~tGh~ipD~~L~~~~T~~dl~~~~~~ 81 (112)
T PF10501_consen 13 IEESAKEVLGAEGFGSQSWNNDWL-DISLEDLQLKFAFLKRLQQLTGHRIPDSKLHSIHTVGDLLNFYEK 81 (112)
T ss_pred HHHHHHHHhcccccccccCCcccc-ccccCCHHHHHHHHHHHHHHHCCCCCcHHHHhcCCHHHHHHHHHH
Confidence 3444555555543332 2344443 4444 3346678999999999999999999999999999999954
No 37
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family. Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
Probab=96.13 E-value=0.032 Score=37.54 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=42.5
Q ss_pred CCCCCCc-ccccCcchhHHHHHHHHHHHHhCCcC-Ccch-hhhhccHHHHHHHHHhhh
Q 042770 18 VTTNGHF-QIDLGLDNLDFVEIVMALKEEFGFEI-PDNE-ADIINTINMAVNFTASHC 72 (75)
Q Consensus 18 i~~~~~l-~~dlglDSl~~v~l~~~le~~f~i~i-~~~~-~~~~~tv~~l~~~i~~~~ 72 (75)
+..|+.+ .+.+|+|||..++|+.++.+.|++.= ..++ +...+++++.++.|.+..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (386)
T TIGR02372 36 LTADLRIDEETLGLDSLLRLSLVTAVAGFFHLSDTGTEDYLLVRRRIGEWVDLIAHHS 93 (386)
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhcccccchhhhhhhhccHHHHHHHHHhcC
Confidence 6677777 46789999999999999999999842 2222 356678999999887543
No 38
>KOG1178 consensus Non-ribosomal peptide synthetase/alpha-aminoadipate reductase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.94 E-value=0.058 Score=40.77 Aligned_cols=55 Identities=20% Similarity=0.036 Sum_probs=48.4
Q ss_pred CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 16 FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 16 ~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
..++++++|. ++|.||+.++.+...+...+.+..|..-.....|+..+..-+.++
T Consensus 614 ~~~s~d~~fF-~lGgdSi~av~~~~~lr~~~~v~~~~~l~~~l~ti~~~~~~~~~~ 668 (1032)
T KOG1178|consen 614 AIVSPDSSFF-QLGGDSISAVRLSGLLRKKGYVEGPLGLIFKLLTIVNLESGIIRI 668 (1032)
T ss_pred cccCCCcchh-hhcchhHHHHHHHHhhhhhheeccccccccchhhHHHHHHHHhhh
Confidence 4688999998 999999999999999999999999999988888888876655543
No 39
>KOG2452 consensus Formyltetrahydrofolate dehydrogenase [Nucleotide transport and metabolism]
Probab=92.43 E-value=0.27 Score=34.92 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=56.1
Q ss_pred HHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC-CcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 3 IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG-FEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 3 v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~-i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
++.++..++. ..-++..+++|+ .-|.-|.+.+.|+..+....| .++...++.--.|+++.++.+.+++.
T Consensus 327 ~~~iw~~il~-kv~~v~~~tdff-~sga~s~dv~rlveeik~~~~g~ele~~~iy~~~t~g~~i~~~ir~lr 396 (881)
T KOG2452|consen 327 VRSVWQRILP-KVLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKLR 396 (881)
T ss_pred HHHHHHHhcc-hheeecccchHh-hcCccchhHHHHHHHHHHhCCcceeccCceEeccchhhHHHHHHHHhc
Confidence 4444444442 124678899998 899999999999999998887 89999999999999999999988764
No 40
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=89.84 E-value=0.67 Score=22.72 Aligned_cols=27 Identities=22% Similarity=0.468 Sum_probs=18.0
Q ss_pred ccCcchhHHHHHHHHHHHHhCCcCCcc
Q 042770 27 DLGLDNLDFVEIVMALKEEFGFEIPDN 53 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i~i~~~ 53 (75)
.-+++++..-.+...+|++||+++...
T Consensus 15 ~~dl~~vT~k~vr~~Le~~~~~dL~~~ 41 (54)
T PF08766_consen 15 EADLDTVTKKQVREQLEERFGVDLSSR 41 (54)
T ss_dssp TS-GGG--HHHHHHHHHHH-SS--SHH
T ss_pred hCCHhHhhHHHHHHHHHHHHCCCcHHH
Confidence 457889999999999999999988743
No 41
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=72.06 E-value=11 Score=19.58 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=19.7
Q ss_pred HHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770 40 MALKEEFGFEIPDNEADIINTINMAVNFTAS 70 (75)
Q Consensus 40 ~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~ 70 (75)
..+++.||+++|.+ ++.|++.++-....
T Consensus 17 ~~l~~~~~~~l~~~---~~~Tl~G~i~~~l~ 44 (81)
T PF03471_consen 17 DDLNELLGLDLPEE---DYDTLGGLILEQLG 44 (81)
T ss_dssp HHHHHHHTS-TTTT---TTSBHHHHHHHHHT
T ss_pred HHHHHHHCcCCCcc---chhhHHHHHHHHcC
Confidence 36889999999985 56699887554433
No 42
>PF00874 PRD: PRD domain; InterPro: IPR011608 Transcriptional antiterminators and activators containing phosphoenolpyruvate: sugar phosphotransferase system (PTS) regulation domains (PRDs) form a class of bacterial regulatory proteins whose activity is modulated by phosphorylation. These regulators stimulate the expression of genes and operons involved in carbohydrate metabolism. PRD-containing proteins are involved in the regulation of catabolic operons in Gram+ and Gram- bacteria [, ] and are often characterised by a short N-terminal effector domain that binds to either RNA (CAT-RBD for antiterminators, IPR004341 from INTERPRO) or DNA (for activators), and a duplicated PRD module which is phosphorylated on conserved histidines by the sugar phosphotransferase system (PTS) in response to the availability of carbon source. The phosphorylations are thought to modify the stability of the dimeric proteins and thereby the RNA- or DNA-binding activity of the effector domain [, , ]. PRDs are characterised by the presence of a duplicated regulatory module of ~100 residues that can be reversibly phosphorylated on histidyl residues by the PTS. PRDs in transcriptional antiterminators and activators are PTS regulatory targets that are (de)phosphorylated in response to the availability of carbon sources [, , , , ]. The PRD domain comprises one and often two highly conserved histidines. It forms a compact bundle comprising five helices (alpha1-alpha5). The core of the PRD module consists of two pairs of antiparallel helices making an angle of ~60 degrees. The first pair contains the antiparallel helices alpha1 and alpha4, while the second pair contains alpha2 and alpha5. The third helix (alpha3) is oriented perpendicularly to alpha5 at the periphery of the bundle. The helices are connected by loops of varying length [, , ].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1TLV_A 1H99_A 3GWH_A 3UFE_B 3RIO_A 3NUF_A.
Probab=71.43 E-value=4.5 Score=20.59 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhCCcCCcchh
Q 042770 34 DFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 34 ~~v~l~~~le~~f~i~i~~~~~ 55 (75)
.+-++...+++.||+++|+.++
T Consensus 58 ~a~~~~~~l~~~~~i~~~~~Ei 79 (89)
T PF00874_consen 58 IAKEICERLEKRYGITLPDDEI 79 (89)
T ss_dssp HHHHHHHHHHHHHTS-S-HHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 4567788899999999999986
No 43
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=64.55 E-value=16 Score=19.52 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHHHHhCCcCCcchh-hhhccHHHHHHHHHhhh
Q 042770 32 NLDFVEIVMALKEEFGFEIPDNEA-DIINTINMAVNFTASHC 72 (75)
Q Consensus 32 Sl~~v~l~~~le~~f~i~i~~~~~-~~~~tv~~l~~~i~~~~ 72 (75)
|+.--+|..++.++||-+--.-.= .+-.|..+|++++.++.
T Consensus 17 ~~t~~~L~~~i~~~FG~~arFhTCSa~~m~a~~Li~FL~~kg 58 (77)
T TIGR03853 17 PYTRESLKAAIEQKFGEDARFHTCSAEGMTADELLQFLLKKG 58 (77)
T ss_pred CcCHHHHHHHHHHHhCCCceEeecccccCCHHHHHHHHHHCC
Confidence 455567888999999976443321 44568899999998764
No 44
>PF13592 HTH_33: Winged helix-turn helix
Probab=64.01 E-value=6.2 Score=19.55 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhCCcCCcchh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~ 55 (75)
.-+|...|+++||+.++..-+
T Consensus 7 ~~~i~~~I~~~fgv~ys~~~v 27 (60)
T PF13592_consen 7 LKEIAAYIEEEFGVKYSPSGV 27 (60)
T ss_pred HHHHHHHHHHHHCCEEcHHHH
Confidence 456788999999998876543
No 45
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=62.08 E-value=19 Score=19.26 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHhCCcCCcchh-hhhccHHHHHHHHHhhh
Q 042770 31 DNLDFVEIVMALKEEFGFEIPDNEA-DIINTINMAVNFTASHC 72 (75)
Q Consensus 31 DSl~~v~l~~~le~~f~i~i~~~~~-~~~~tv~~l~~~i~~~~ 72 (75)
.++.--+|..++.++||-+--.-.= .+-.|..+|++++.++.
T Consensus 18 ~~~t~~~L~~ai~~~FG~~arFhTCSae~m~a~eLv~FL~~rg 60 (78)
T PF10678_consen 18 NPYTKEELKAAIIEKFGEDARFHTCSAEGMTADELVDFLEERG 60 (78)
T ss_pred CCcCHHHHHHHHHHHhCCCceEEecCCCCCCHHHHHHHHHHcC
Confidence 3455668888999999976544221 34458889999988764
No 46
>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]. Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.
Probab=59.89 E-value=5.9 Score=21.51 Aligned_cols=17 Identities=29% Similarity=0.649 Sum_probs=11.5
Q ss_pred HHHHHHHHhCCcCCcch
Q 042770 38 IVMALKEEFGFEIPDNE 54 (75)
Q Consensus 38 l~~~le~~f~i~i~~~~ 54 (75)
=+..+|+++|+.+|.+-
T Consensus 6 ~I~~~E~~lg~~LP~~y 22 (130)
T PF09346_consen 6 EIQELEEKLGVRLPDDY 22 (130)
T ss_dssp HHHHHHHHHTS---HHH
T ss_pred HHHHHHHHhCCCCcHHH
Confidence 46789999999999873
No 47
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=59.48 E-value=13 Score=22.45 Aligned_cols=34 Identities=21% Similarity=0.522 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHH
Q 042770 33 LDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67 (75)
Q Consensus 33 l~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~ 67 (75)
..++++.+.|..+ |+++|..-+.++.+.+.+..|
T Consensus 6 vvL~El~teLr~R-g~~VP~~V~E~lRlar~~l~~ 39 (170)
T COG4010 6 VVLVELLTELRKR-GVDVPTSVTEDLRLARTSLNF 39 (170)
T ss_pred ehHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHHHH
Confidence 4577888888776 999998877766666555443
No 48
>PRK00157 rplL 50S ribosomal protein L7/L12; Reviewed
Probab=58.99 E-value=12 Score=21.76 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.4
Q ss_pred CcchhHHHHHHHHHHHHhCCcC
Q 042770 29 GLDNLDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i 50 (75)
++.=+...+|+..||++||++=
T Consensus 14 ~LtllE~~eLv~~lee~fgv~a 35 (123)
T PRK00157 14 EMTVLELSELVKALEEKFGVSA 35 (123)
T ss_pred hCCHHHHHHHHHHHHHHcCCCc
Confidence 4556778899999999999973
No 49
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=58.55 E-value=13 Score=18.56 Aligned_cols=15 Identities=33% Similarity=0.764 Sum_probs=9.2
Q ss_pred HHHHHHHHhCCcCCcc
Q 042770 38 IVMALKEEFGFEIPDN 53 (75)
Q Consensus 38 l~~~le~~f~i~i~~~ 53 (75)
++..+.++|| .+|+.
T Consensus 12 llRlL~rrFG-~lp~~ 26 (59)
T PF14261_consen 12 LLRLLTRRFG-ELPPE 26 (59)
T ss_pred HHHHHHHHcC-CCCHH
Confidence 4455677777 45554
No 50
>TIGR00855 L12 ribosomal protein L7/L12. THis model resembles Pfam model pfam00542 but matches the full length of prokaryotic and organellar proteins rather than just the C-terminus.
Probab=57.44 E-value=13 Score=21.74 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.6
Q ss_pred CcchhHHHHHHHHHHHHhCCcC
Q 042770 29 GLDNLDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i 50 (75)
++.=+...+|+..||++||++=
T Consensus 15 ~LTllE~~eLv~~lee~fgV~a 36 (126)
T TIGR00855 15 EMTVLELSELVKALEEKFGVSA 36 (126)
T ss_pred hCCHHHHHHHHHHHHHhcCCCc
Confidence 5566788899999999999974
No 51
>COG1905 NuoE NADH:ubiquinone oxidoreductase 24 kD subunit [Energy production and conversion]
Probab=57.06 E-value=3.9 Score=24.81 Aligned_cols=65 Identities=17% Similarity=0.129 Sum_probs=40.9
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhcC
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQG 74 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~~ 74 (75)
++.+.+.+.+|+.+.+.++|-.| |+.-++=+..+...=-+-|.++.+.+ .|...+.+.+.+..++
T Consensus 95 ~l~~~l~~~lgi~~gett~DG~f-------tl~~v~ClGaC~~AP~vmind~~~~~-lt~e~l~eil~~~~~~ 159 (160)
T COG1905 95 ALLKALEKKLGIKPGETTADGKF-------TLEPVECLGACGQAPVVMINDDVYGR-LTPEKLEEILEKLKAK 159 (160)
T ss_pred HHHHHHHHHhCCCCCCcCCCCeE-------EEeeeeeecccccCCEEEECCchhcc-CCHHHHHHHHHHHhcC
Confidence 57788899999999999999888 33333333333333233344444444 7777777777665543
No 52
>PF03816 LytR_cpsA_psr: Cell envelope-related transcriptional attenuator domain; InterPro: IPR004474 This entry describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is protein psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. These proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.; PDB: 3PE5_B 3QFI_A 3NRO_B 3OKZ_B 3OWQ_C 3MEJ_A 4DE9_A 3TEP_A 3TEL_A 3TFL_A ....
Probab=55.18 E-value=9.5 Score=22.35 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 34 DFVEIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 34 ~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
..-.+...+++.||++|+.--.-++..+..+++.+
T Consensus 49 G~~~~~~~v~~l~gv~Id~yv~i~~~~f~~lvD~l 83 (149)
T PF03816_consen 49 GAEALIKAVEELLGVPIDYYVVIDFEGFSKLVDAL 83 (149)
T ss_dssp HHHHHHHHHHHHHTS---EEEEEEHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhCCCCCeEEEEeHHHHHHHHHhh
Confidence 45567888999999988777667778888887765
No 53
>PF06755 DUF1219: Protein of unknown function (DUF1219); InterPro: IPR009610 This family consists of several hypothetical proteins which seem to be specific to the enterobacteria Escherichia coli and Shigella flexneri. Family members are often known as YeeV proteins and are around 125 residues in length. The function of this family is unknown.
Probab=54.29 E-value=17 Score=20.79 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=14.8
Q ss_pred HHHHHHHhCCcCCcchhhhh
Q 042770 39 VMALKEEFGFEIPDNEADII 58 (75)
Q Consensus 39 ~~~le~~f~i~i~~~~~~~~ 58 (75)
...|+..||+.+.+..|.+-
T Consensus 27 t~LL~~HYGLtLNDT~f~de 46 (114)
T PF06755_consen 27 TYLLEQHYGLTLNDTPFSDE 46 (114)
T ss_pred HHHHHHhcCCccCCCccchH
Confidence 44679999999988766433
No 54
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=50.50 E-value=48 Score=19.51 Aligned_cols=48 Identities=8% Similarity=0.146 Sum_probs=29.5
Q ss_pred CcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 23 HFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 23 ~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
++-+.-++.|+.+++++..+..+-.-++|.+- .+.--..++++|.+++
T Consensus 90 ~lPdAq~ins~qFmeliefLH~rsQe~lp~~r--r~~LSeAlAeHIkRRL 137 (149)
T PF03574_consen 90 NLPDAQLINSFQFMELIEFLHRRSQEDLPPER--RMPLSEALAEHIKRRL 137 (149)
T ss_dssp S--SB--EEHHHHHHHHHHHHHHHHTTS-TTT-------HHHHHHHHHHH
T ss_pred CCchhhhhhHHHHHHHHHHHHHhhhhhCCccc--cCcHHHHHHHHHHHHH
Confidence 34345688999999999999988777777663 3333356777777664
No 55
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=49.74 E-value=37 Score=21.56 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=30.1
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCcchhhh-hccHHHHHHHH
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPDNEADI-INTINMAVNFT 68 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~~~~~~-~~tv~~l~~~i 68 (75)
.-|--.+..++..|++-+|++++.+++.+ -..++.-++-+
T Consensus 180 ~PDP~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el 220 (238)
T TIGR00161 180 YPDPRAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKL 220 (238)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHH
Confidence 57888999999999999999999998844 33444433333
No 56
>smart00860 SMI1_KNR4 SMI1 / KNR4 family. Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.
Probab=49.34 E-value=16 Score=19.23 Aligned_cols=18 Identities=22% Similarity=0.636 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCcCCcch
Q 042770 37 EIVMALKEEFGFEIPDNE 54 (75)
Q Consensus 37 ~l~~~le~~f~i~i~~~~ 54 (75)
+-+..+|+++|+++|.+-
T Consensus 5 ~~i~~~e~~lg~~LP~~y 22 (129)
T smart00860 5 EEIAELEKKLGIKLPEDY 22 (129)
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 456788999999999874
No 57
>CHL00083 rpl12 ribosomal protein L12
Probab=49.31 E-value=20 Score=21.01 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=18.8
Q ss_pred CcchhHHHHHHHHHHHHhCCcCC
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIP 51 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~ 51 (75)
++.=+...+|+..|+++||++-.
T Consensus 14 ~LTllE~~eLv~~le~~fgv~~~ 36 (131)
T CHL00083 14 SLTLLEAAELVKQIEETFGVDAS 36 (131)
T ss_pred hCCHHHHHHHHHHHHHHcCCCcc
Confidence 55567788999999999999643
No 58
>PF00126 HTH_1: Bacterial regulatory helix-turn-helix protein, lysR family; InterPro: IPR000847 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family, the lysR family, groups together a range of proteins, including ampR, catM, catR, cynR, cysB, gltC, iciA, ilvY, irgB, lysR, metR, mkaC, mleR, nahR, nhaR, nodD, nolR, oxyR, pssR, rbcR, syrM, tcbR, tfdS and trpI [, , , , ]. The majority of these proteins appear to be transcription activators and most are known to negatively regulate their own expression. All possess a potential HTH DNA-binding motif towards their N-termini.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3T1B_D 3SZP_A 1O7L_C 1B9N_A 1B9M_A 3FZJ_J 3FXR_B 3FXQ_A 3FXU_A 2IJL_B ....
Probab=49.30 E-value=32 Score=16.71 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=20.5
Q ss_pred cccCcchhHHHHHHHHHHHHhCCcC
Q 042770 26 IDLGLDNLDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 26 ~dlglDSl~~v~l~~~le~~f~i~i 50 (75)
+.+|+.-=.+-.-+..+|+.||+++
T Consensus 21 ~~l~is~~~vs~~i~~LE~~lg~~L 45 (60)
T PF00126_consen 21 EELGISQSAVSRQIKQLEEELGVPL 45 (60)
T ss_dssp HHCTSSHHHHHHHHHHHHHHHTS-S
T ss_pred HHhhccchHHHHHHHHHHHHhCCeE
Confidence 4678888888889999999999986
No 59
>COG0222 RplL Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]
Probab=49.20 E-value=21 Score=20.75 Aligned_cols=20 Identities=45% Similarity=0.732 Sum_probs=16.2
Q ss_pred cchhHHHHHHHHHHHHhCCc
Q 042770 30 LDNLDFVEIVMALKEEFGFE 49 (75)
Q Consensus 30 lDSl~~v~l~~~le~~f~i~ 49 (75)
+.=|.+.+|+..+|+.||++
T Consensus 15 ~svlel~eLvk~~eekfgVs 34 (124)
T COG0222 15 LTVLELSELVKALEEKFGVT 34 (124)
T ss_pred hhHHHHHHHHHHHHHHhCCc
Confidence 33466788999999999997
No 60
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=49.15 E-value=10 Score=22.69 Aligned_cols=26 Identities=15% Similarity=0.376 Sum_probs=21.2
Q ss_pred ccCcchhHHHHHHHHHHHHhCCcCCc
Q 042770 27 DLGLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i~i~~ 52 (75)
..|-||+.++-++..+....+.++-.
T Consensus 7 SGG~DS~~Ll~~l~~~~~~~~~~~~~ 32 (182)
T PF01171_consen 7 SGGKDSMALLHLLKELRRRNGIKLIA 32 (182)
T ss_dssp -SSHHHHHHHHHHHHHHTTTTTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCeEE
Confidence 46999999999999999988876533
No 61
>TIGR00350 lytR_cpsA_psr cell envelope-related function transcriptional attenuator common domain. This model describes a domain of unknown function that is found in the predicted extracellular domain of a number of putative membrane-bound proteins. One of these is proteins psr, described as a penicillin binding protein 5 (PDP-5) synthesis repressor. Another is Bacillus subtilis LytR, described as a transcriptional attenuator of itself and the LytABC operon, where LytC is N-acetylmuramoyl-L-alanine amidase. A third is CpsA, a putative regulatory protein involved in exocellular polysaccharide biosynthesis. Besides the region of strong similarily represented by this model, these proteins share the property of having a short putative N-terminal cytoplasmic domain and transmembrane domain forming a signal-anchor.
Probab=48.90 E-value=14 Score=21.80 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 36 VEIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 36 v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
-.++..+++.||++|+.--.-++..+.++++.+
T Consensus 53 ~~~~~~V~~l~gi~Id~yv~v~~~~f~~lvD~l 85 (152)
T TIGR00350 53 QCLVKTVENLLGVPIDRYVEVDFDGFEDVVDAL 85 (152)
T ss_pred HHHHHHHHHHHCCCCcEEEEEcHHHHHHHHhcC
Confidence 457888999999988877667777777777754
No 62
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=48.66 E-value=5.8 Score=19.61 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=14.4
Q ss_pred hHHHHHHhhhCCCCCCCCCCCC
Q 042770 2 PIISVIKNFQNVDPFKVTTNGH 23 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~ 23 (75)
.|.+.+++.+|+++++|.....
T Consensus 4 ~I~~~Va~~~~i~~~~i~s~~R 25 (60)
T smart00760 4 EIIEAVAEYFGVKPEDLKSKSR 25 (60)
T ss_pred HHHHHHHHHhCCCHHHHhcCCC
Confidence 4667777777777766654444
No 63
>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.
Probab=48.61 E-value=14 Score=20.00 Aligned_cols=17 Identities=12% Similarity=0.458 Sum_probs=11.2
Q ss_pred HHHHHHHHhCCcCCcch
Q 042770 38 IVMALKEEFGFEIPDNE 54 (75)
Q Consensus 38 l~~~le~~f~i~i~~~~ 54 (75)
-+..+|+++|+++|.+-
T Consensus 3 ~I~~~E~~Lg~~lP~~Y 19 (120)
T PF14568_consen 3 EIEEAEKKLGVKLPEDY 19 (120)
T ss_dssp HHHHHHHHHTS---HHH
T ss_pred HHHHHHHHhCCCCCHHH
Confidence 46789999999999863
No 64
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=47.16 E-value=31 Score=21.12 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHhCCcCCcchh-hhhccHHHHHHHHHh
Q 042770 31 DNLDFVEIVMALKEEFGFEIPDNEA-DIINTINMAVNFTAS 70 (75)
Q Consensus 31 DSl~~v~l~~~le~~f~i~i~~~~~-~~~~tv~~l~~~i~~ 70 (75)
|...+..++..+++.+++.++..++ ....++.++.+++++
T Consensus 176 d~~aA~~ll~~l~~~~~~~id~~~l~~ead~~~e~~~~~~~ 216 (219)
T PF09754_consen 176 DPRAAARLLEALSKLLGLKIDLSDLEEEADNIEEAEEMVEQ 216 (219)
T ss_dssp -HHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhCceeeHHHHHHhcCCHHHHHHHHHH
Confidence 8999999999999999999977776 344344455554443
No 65
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=45.52 E-value=20 Score=22.67 Aligned_cols=32 Identities=13% Similarity=0.268 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 37 EIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 37 ~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
+++..+.+.||+.+|..++.-....+++.+-+
T Consensus 94 ~~i~~l~~~~gi~~P~aDll~~d~~~~l~~~v 125 (214)
T PF09865_consen 94 AAIDYLRDKYGIELPLADLLYSDPYDALMDGV 125 (214)
T ss_pred HHHHHHHHhhCCCccHHHhcccCchHHHhhcc
Confidence 66889999999999999986666666665544
No 66
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=44.57 E-value=58 Score=20.02 Aligned_cols=40 Identities=8% Similarity=0.098 Sum_probs=29.7
Q ss_pred cchhHHHHHHHHHHHHhCCcCCcchhhh-hccHHHHHHHHH
Q 042770 30 LDNLDFVEIVMALKEEFGFEIPDNEADI-INTINMAVNFTA 69 (75)
Q Consensus 30 lDSl~~v~l~~~le~~f~i~i~~~~~~~-~~tv~~l~~~i~ 69 (75)
.|--.+..++..|++.+|++++.+++.+ -..+...+.-+.
T Consensus 125 pDP~AA~alL~~L~kllgl~vd~~~L~e~Ae~ie~~~~~~~ 165 (188)
T TIGR00162 125 IDPKAAKAVLEVLCKMLSLEVSVEALEERAKEMEKIIAKIK 165 (188)
T ss_pred CChHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999999998833 444444444333
No 67
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=44.12 E-value=32 Score=21.11 Aligned_cols=34 Identities=21% Similarity=0.480 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHH
Q 042770 33 LDFVEIVMALKEEFGFEIPDNEADIINTINMAVNF 67 (75)
Q Consensus 33 l~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~ 67 (75)
+.+.+|...|..+ |+++|.+-+.++...+.+..|
T Consensus 6 vVL~eL~s~L~~k-g~~vP~ev~e~LR~a~~ii~~ 39 (169)
T PF09869_consen 6 VVLNELLSDLRKK-GVEVPEEVFEDLRLANAIINY 39 (169)
T ss_pred ehHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHH
Confidence 4567788888665 999999888887777766655
No 68
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=42.84 E-value=26 Score=20.87 Aligned_cols=24 Identities=13% Similarity=0.488 Sum_probs=19.7
Q ss_pred ccCcchhHHHHHHHHHHHHhCCcC
Q 042770 27 DLGLDNLDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i~i 50 (75)
..|.||..++.+...+...+|+++
T Consensus 7 SGG~DS~~ll~ll~~~~~~~~~~v 30 (189)
T TIGR02432 7 SGGVDSMALLHLLLKLQPKLKIRL 30 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCE
Confidence 579999999999988877777653
No 69
>cd00387 Ribosomal_L7_L12 Ribosomal protein L7/L12. Ribosomal protein L7/L12 refers to the large ribosomal subunit proteins L7 and L12, which are identical except that L7 is acetylated at the N terminus. It is a component of the L7/L12 stalk, which is located at the surface of the ribosome. The stalk base consists of a portion of the 23S rRNA and ribosomal proteins L11 and L10. An extended C-terminal helix of L10 provides the binding site for L7/L12. L7/L12 consists of two domains joined by a flexible hinge, with the helical N-terminal domain (NTD) forming pairs of homodimers that bind to the extended helix of L10. It is the only multimeric ribosomal component, with either four or six copies per ribosome that occur as two or three dimers bound to the L10 helix. L7/L12 is the only ribosomal protein that does not interact directly with rRNA, but instead has indirect interactions through L10. The globular C-terminal domains of L7/L12 are highly mobile. They are exposed to the cytoplasm and
Probab=42.18 E-value=33 Score=19.99 Aligned_cols=22 Identities=41% Similarity=0.585 Sum_probs=18.3
Q ss_pred CcchhHHHHHHHHHHHHhCCcC
Q 042770 29 GLDNLDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i 50 (75)
++.=+...+|+..|+++||++-
T Consensus 12 ~LtllE~~eLv~~le~~~gv~~ 33 (127)
T cd00387 12 ELTLLEAAELVKALEEKFGVSA 33 (127)
T ss_pred hCCHHHHHHHHHHHHHHhCCCc
Confidence 4556778899999999999973
No 70
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=41.73 E-value=72 Score=20.51 Aligned_cols=53 Identities=15% Similarity=0.160 Sum_probs=38.2
Q ss_pred HHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 5 SVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 5 ~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
+.+.+.++.++. .+.-+-+...-||=-|-..+.++..+.+.||..++..++.+
T Consensus 69 ~~~~~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~ 124 (275)
T PRK14611 69 RLFERYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFE 124 (275)
T ss_pred HHHHHHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 344445554322 34555666677888999999999999999999998887633
No 71
>COG3900 Predicted periplasmic protein [Function unknown]
Probab=41.49 E-value=40 Score=21.87 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCcCCcchhhhhccHHHHHHHHH
Q 042770 37 EIVMALKEEFGFEIPDNEADIINTINMAVNFTA 69 (75)
Q Consensus 37 ~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~ 69 (75)
+++.+|.+.||++.|..++..-.-..++++-+.
T Consensus 129 ~lvdei~~kyG~~lp~adllsadpyd~L~~gv~ 161 (262)
T COG3900 129 ELVDEIDDKYGITLPGADLLSADPYDDLIAGVE 161 (262)
T ss_pred HHHHHHHhhcCCCccchhhhccChHHHHHhhhh
Confidence 678899999999999999866666666665444
No 72
>PF08861 DUF1828: Domain of unknown function DUF1828; InterPro: IPR014960 These proteins are functionally uncharacterised.
Probab=40.87 E-value=58 Score=17.31 Aligned_cols=42 Identities=17% Similarity=0.117 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 32 NLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 32 Sl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
|=...+++..+-..||+++...++.-..+.+++...+.+..+
T Consensus 44 s~~R~~~l~~il~~~gv~~~~~el~~~~~~~~~~~~~~~liq 85 (90)
T PF08861_consen 44 SKKRKKILNSILNGFGVELDEGELFIKTSEENFPQAKHRLIQ 85 (90)
T ss_pred chHHHHHHHHHHHHcCccccCCEEEEEeCHHHHHHHHHHHHH
Confidence 667788999999999999999888666666766666555443
No 73
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=40.37 E-value=49 Score=19.07 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=18.6
Q ss_pred HHHhCCcCCcchh-----hhhccHHHHHHHHHhhh
Q 042770 43 KEEFGFEIPDNEA-----DIINTINMAVNFTASHC 72 (75)
Q Consensus 43 e~~f~i~i~~~~~-----~~~~tv~~l~~~i~~~~ 72 (75)
=++-||.||.+-+ .++.|-.++.+||+.+.
T Consensus 79 Ye~SnIrIP~DIIEdl~~~~L~Te~eVmnYiEnqR 113 (130)
T PF06720_consen 79 YEQSNIRIPSDIIEDLVNQRLQTEQEVMNYIENQR 113 (130)
T ss_dssp HHHTT----HHHHHHHHTT--SSHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHHhhhhHHHHHHHHHhhH
Confidence 3456999998755 56789999999998764
No 74
>PRK09772 transcriptional antiterminator BglG; Provisional
Probab=40.22 E-value=30 Score=22.33 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCcCCcchh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~ 55 (75)
.-.++..+++.||+.+|+++.
T Consensus 134 a~~~~~~i~~~~~i~lp~~E~ 154 (278)
T PRK09772 134 GEEALTIIDKRLGVQLPKDEV 154 (278)
T ss_pred HHHHHHHHHHHhCCCCCHHHH
Confidence 456888999999999999885
No 75
>PF10045 DUF2280: Uncharacterized conserved protein (DUF2280); InterPro: IPR018738 This entry is represented by Burkholderia phage Bups phi1, Orf2.36. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=39.35 E-value=30 Score=19.53 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCcCCcchh
Q 042770 36 VEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 36 v~l~~~le~~f~i~i~~~~~ 55 (75)
-+.+.++.++||+.++....
T Consensus 23 s~v~~aVk~eFgi~vsrQqv 42 (104)
T PF10045_consen 23 SEVAEAVKEEFGIDVSRQQV 42 (104)
T ss_pred HHHHHHHHHHhCCccCHHHH
Confidence 46678899999999988765
No 76
>PF10036 RLL: Putative carnitine deficiency-associated protein; InterPro: IPR019265 This family of proteins conserved from nematodes to humans is of approximately 250 amino acids. It is purported to be carnitine deficiency-associated protein but this could not be confirmed. It carries a characteristic RLL sequence-motif. The function is unknown.
Probab=37.96 E-value=1e+02 Score=19.88 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=37.5
Q ss_pred cccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 26 ~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
+.+.++|=.+.+-+..|-..+|++..++ ...++..++.+|.+++.
T Consensus 125 ~~ld~~s~~f~~gv~~La~lL~i~~h~d---~~v~l~a~~~~i~~~l~ 169 (249)
T PF10036_consen 125 DNLDFNSPEFKAGVRALASLLQIPRHPD---HLVTLKAACKLIKEKLS 169 (249)
T ss_pred cccCCCCHHHHHHHHHHHHHhCCCCCch---HHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999988664 45677778888887764
No 77
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=37.78 E-value=72 Score=17.89 Aligned_cols=42 Identities=12% Similarity=0.057 Sum_probs=34.0
Q ss_pred cchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 30 LDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 30 lDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
-+|...+......-+.+|+.+....+..-.|-.++.+.|.+.
T Consensus 41 ~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~l 82 (117)
T PF00763_consen 41 PASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHH
Confidence 468899999999999999999888888888888888877654
No 78
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=37.70 E-value=41 Score=22.11 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=29.0
Q ss_pred ccCcchhHHHHHHHHHHHHhCCcCCcc--hhhhhccHHHHHHHHH
Q 042770 27 DLGLDNLDFVEIVMALKEEFGFEIPDN--EADIINTINMAVNFTA 69 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i~i~~~--~~~~~~tv~~l~~~i~ 69 (75)
..|++ .-+++...+.++||+.+-.+ +.+.+.-++++++.++
T Consensus 70 GpGLe--eglki~~~vK~efgv~ilTDVHe~~q~~~vA~VvDilQ 112 (279)
T COG2877 70 GPGLE--EGLKILQEVKEEFGVPILTDVHEPSQAQPVAEVVDVLQ 112 (279)
T ss_pred CCCHH--HHHHHHHHHHHHcCCceeeccCChhhcchHHhhhhhhc
Confidence 45555 46889999999999997443 3466666777766553
No 79
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=36.68 E-value=90 Score=19.05 Aligned_cols=39 Identities=15% Similarity=0.153 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 34 DFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 34 ~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
..+.=...+=++||+.....-..-.+|...+.+|.++..
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~ 54 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAE 54 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHH
Confidence 345555666678999888888899999999999997654
No 80
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=35.84 E-value=18 Score=21.24 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=11.1
Q ss_pred HHHHHHHHHhCCcCCcch
Q 042770 37 EIVMALKEEFGFEIPDNE 54 (75)
Q Consensus 37 ~l~~~le~~f~i~i~~~~ 54 (75)
+.+..+|++.++.+|.+-
T Consensus 25 e~I~~~Ee~L~i~lP~ey 42 (132)
T PF14567_consen 25 EQIVEAEEQLGISLPEEY 42 (132)
T ss_dssp HHHHHHHHHHT----HHH
T ss_pred HHHHHHHHHHCCCCCHHH
Confidence 456789999999999864
No 81
>COG1151 6Fe-6S prismane cluster-containing protein [Energy production and conversion]
Probab=35.81 E-value=46 Score=24.32 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=22.3
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCcc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPDN 53 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~~ 53 (75)
-.|+-.++.++.+|.+.||++||+-
T Consensus 470 CnD~~r~~~la~aLae~lgvdI~dL 494 (576)
T COG1151 470 CNDIYRIIVLALALAEVLGLDINDL 494 (576)
T ss_pred cchHHHHHHHHHHHHHHhCCCCccc
Confidence 5799999999999999999987763
No 82
>KOG2573 consensus Ribosome biogenesis protein - Nop56p/Sik1p [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=35.50 E-value=67 Score=22.76 Aligned_cols=51 Identities=27% Similarity=0.386 Sum_probs=40.5
Q ss_pred CCCCCCCCC--CcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHH
Q 042770 14 DPFKVTTNG--HFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMA 64 (75)
Q Consensus 14 ~~~~i~~~~--~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l 64 (75)
+...++.|. .+.+++|.||=.+-+++-+-..-.|.+|++-++.++.++.+-
T Consensus 220 dk~~l~ed~~~~~~e~l~~d~~ka~~Iiea~k~SMG~diS~~Dl~Ni~~fa~r 272 (498)
T KOG2573|consen 220 DKEKLNEDGLHELLEDLGVDSEKAQEIIEAAKNSMGQDISPADLENIRKFAER 272 (498)
T ss_pred chhhccccchhHHHHHhcCcHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 344555555 233689999999999999999999999999999888877553
No 83
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=34.98 E-value=56 Score=15.43 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCcCCcchh-------------hhhccHHHHHHHHHh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA-------------DIINTINMAVNFTAS 70 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~-------------~~~~tv~~l~~~i~~ 70 (75)
+-.+...|.+.+|+.++...- .++.|+.+.+++|..
T Consensus 5 f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~~~~~~~~y~~~L~~ 53 (57)
T PF03705_consen 5 FERFRELIYRRTGIDLSEYKRSLLERRLARRMRALGLPSFAEYYELLRS 53 (57)
T ss_dssp HHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 456778889999999988641 445666666666654
No 84
>PF10826 DUF2551: Protein of unknown function (DUF2551) ; InterPro: IPR020501 This entry contains proteins with no known function.
Probab=34.82 E-value=74 Score=17.25 Aligned_cols=37 Identities=22% Similarity=0.200 Sum_probs=27.1
Q ss_pred cCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 28 LGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 28 lglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
+...|+..-++-..|.++|++ ...+|++++-++..++
T Consensus 21 l~~~~~T~~di~e~L~~~f~v--------s~~~VasMVG~i~Srl 57 (83)
T PF10826_consen 21 LKGKKFTTDDIYERLKEKFDV--------SYRGVASMVGLIHSRL 57 (83)
T ss_pred HhCCCeeHHHHHHHHHHHcCc--------hHHHHHHHHHHHHHhh
Confidence 345567777788888888877 4567778888887765
No 85
>COG1669 Predicted nucleotidyltransferases [General function prediction only]
Probab=34.77 E-value=60 Score=18.09 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=29.1
Q ss_pred CCCCCCCCcc----cccCcchhHHHHHHHHHHHHhCCcCCcchh
Q 042770 16 FKVTTNGHFQ----IDLGLDNLDFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 16 ~~i~~~~~l~----~dlglDSl~~v~l~~~le~~f~i~i~~~~~ 55 (75)
.+-+|++++- -.-|...+.++++...|++-||+++.-..-
T Consensus 36 gE~~~~SDIDILVef~~~~~ll~~~~l~~~L~~llg~~VDL~t~ 79 (97)
T COG1669 36 GEQKPDSDIDILVEFEPGKTLLDLVRLEDELSDLLGRKVDLVTK 79 (97)
T ss_pred CCCCCCCCceeEEeecCCccHHHHHHHHHHHHHHhCCeeeeecc
Confidence 4555665541 023689999999999999999998765443
No 86
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.06 E-value=12 Score=22.43 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=33.1
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhC
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFG 47 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~ 47 (75)
++++++++.+|+++++++.=....++.|-.+.++-.....+...++
T Consensus 52 a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld 97 (148)
T COG4103 52 AFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLD 97 (148)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 5678888889988877766555556777777777777777765544
No 87
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=33.24 E-value=1.1e+02 Score=19.80 Aligned_cols=53 Identities=9% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHhhhCCCC---CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhh
Q 042770 4 ISVIKNFQNVDP---FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEAD 56 (75)
Q Consensus 4 ~~ii~~~~~~~~---~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~ 56 (75)
.+.+.+.++..+ -.+.-+-+...-||=-|-..+-++.++.+.||..++.+++.
T Consensus 71 ~~~~~~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~ 126 (300)
T PRK03188 71 AELLAEHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELL 126 (300)
T ss_pred HHHHHHHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence 344445555432 13455556666788889999999999999999999888763
No 88
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=32.77 E-value=1.2e+02 Score=20.04 Aligned_cols=54 Identities=13% Similarity=0.220 Sum_probs=40.4
Q ss_pred HHHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 4 ISVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 4 ~~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
.+.+.+.++.++. .+.-+-+...-||--|-+.+-.+..+.+.|+..++.+++.+
T Consensus 68 ~~~l~~~~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~ 124 (288)
T PRK00650 68 VALFRRYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRS 124 (288)
T ss_pred HHHHHHHhCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 4455566665432 34556667678999999999999999999999998887643
No 89
>PF02594 DUF167: Uncharacterised ACR, YggU family COG1872; InterPro: IPR003746 This entry describes proteins of unknown function. Structures for two of these proteins, YggU from Escherichia coli and MTH637 from the archaea Methanobacterium thermoautotrophicum, have been determined; they have a core 2-layer alpha/beta structure consisting of beta(2)-loop-alpha-beta(2)-alpha [, ].; PDB: 1YH5_A 1N91_A 1JRM_A.
Probab=32.35 E-value=21 Score=18.83 Aligned_cols=18 Identities=11% Similarity=0.178 Sum_probs=11.3
Q ss_pred hHHHHHHhhhCCCCCCCC
Q 042770 2 PIISVIKNFQNVDPFKVT 19 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~ 19 (75)
.+++.+++.++++.+.+.
T Consensus 44 ali~~La~~l~v~ks~i~ 61 (77)
T PF02594_consen 44 ALIRFLAKALGVPKSDIE 61 (77)
T ss_dssp HHHHHHHHHCT--TTCEE
T ss_pred HHHHHHHHHhCCCcccEE
Confidence 467778888888776654
No 90
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=32.19 E-value=44 Score=21.28 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=18.4
Q ss_pred ccCcchhHHHHHHHHHHHHhCC
Q 042770 27 DLGLDNLDFVEIVMALKEEFGF 48 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i 48 (75)
..|.||+.++-++..+.+.+++
T Consensus 37 SGG~DS~~LL~ll~~l~~~~~~ 58 (258)
T PRK10696 37 SGGKDSYTLLDILLNLQKRAPI 58 (258)
T ss_pred cCCHHHHHHHHHHHHHHHhCCC
Confidence 6799999999999998776553
No 91
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=31.96 E-value=1.3e+02 Score=19.74 Aligned_cols=47 Identities=9% Similarity=0.142 Sum_probs=34.1
Q ss_pred cccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 24 FQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 24 l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
+-+.-++.|+.+++|+..+..+-.-++|.+. .+.--..++++|.+++
T Consensus 144 lPdAqli~sfqF~eLiefLh~rsQed~p~~r--rmpLSeAlaEHIkRRL 190 (299)
T PRK13245 144 LPDAQLVSSFEFLELIEFLHKRSQEDLPPEH--RMPLSEALAEHIKRRL 190 (299)
T ss_pred CchhhhhhHHHHHHHHHHHHHhhhhcCChhc--cCchHHHHHHHHHHHH
Confidence 3345578899999999999998777787764 3333456777777664
No 92
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=31.94 E-value=7.9 Score=19.88 Aligned_cols=23 Identities=13% Similarity=0.229 Sum_probs=11.7
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHF 24 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l 24 (75)
.|++.+++.+|+++++|.....-
T Consensus 4 ~Ii~~Va~~~~v~~~~i~s~~R~ 26 (70)
T PF08299_consen 4 DIIEAVAEYFGVSVEDIRSKSRK 26 (70)
T ss_dssp HHHHHHHHHTT--HHHHHSS---
T ss_pred HHHHHHHHHHCCCHHHHhCCCCC
Confidence 46667777777776666554443
No 93
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=31.61 E-value=49 Score=19.46 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=19.3
Q ss_pred ccCcchhHHHHHHHHHHHHhCCcCC
Q 042770 27 DLGLDNLDFVEIVMALKEEFGFEIP 51 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f~i~i~ 51 (75)
..|.||..++.++..+-..++.++.
T Consensus 7 SGG~DS~vl~~l~~~~~~~~~~~v~ 31 (185)
T cd01992 7 SGGPDSMALLHLLSELKPRLGLRLV 31 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCcEE
Confidence 5799999999999888776555443
No 94
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=31.57 E-value=1.5e+02 Score=19.18 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=38.6
Q ss_pred HHHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 4 ISVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 4 ~~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
...+.+..+..+. .+.-+-+...-||--|-+.+-.+..+.+.|+..++.+++..
T Consensus 75 ~~~l~~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~ 131 (271)
T PRK00343 75 ARLLQKATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAE 131 (271)
T ss_pred HHHHHHHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 3445555555432 34455677677888999999999999999999888877643
No 95
>PF13565 HTH_32: Homeodomain-like domain
Probab=30.87 E-value=56 Score=16.35 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHhCCcC
Q 042770 33 LDFVEIVMALKEEFGFEI 50 (75)
Q Consensus 33 l~~v~l~~~le~~f~i~i 50 (75)
...-+|...|+++||+.+
T Consensus 49 wt~~~i~~~L~~~~g~~~ 66 (77)
T PF13565_consen 49 WTPREIAEYLEEEFGISV 66 (77)
T ss_pred CCHHHHHHHHHHHhCCCC
Confidence 345677788999999876
No 96
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=30.80 E-value=91 Score=20.43 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 39 VMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 39 ~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
+..+++.||+.+|.+ .+.|++.++-....+
T Consensus 220 l~dl~~~l~~~l~~~---~~~Tl~G~i~~~l~~ 249 (292)
T PRK15094 220 IEDFNEAFGTHFSDE---EVDTIGGLVMQAFGH 249 (292)
T ss_pred HHHHHHHhCCCCCCC---CCccHHHHHHHHhCc
Confidence 558888999999864 678988876555444
No 97
>PF01314 AFOR_C: Aldehyde ferredoxin oxidoreductase, domains 2 & 3; InterPro: IPR001203 Enzymes of the aldehyde ferredoxin oxidoreductase (AOR) family [] contain a tungsten cofactor and an 4Fe4S cluster and catalyse the interconversion of aldehydes to carboxylates []. This family includes AOR, formaldehyde ferredoxin oxidoreductase (FOR), glyceraldehyde-3-phosphate ferredoxin oxidoreductase (GAPOR), all isolated from hyperthermophilic archea []; carboxylic acid reductase found in clostridia []; and hydroxycarboxylate viologen oxidoreductase from Proteus vulgaris, the sole member of the AOR family containing molybdenum []. GAPOR may be involved in glycolysis [], but the functions of the other proteins are not yet clear. AOR has been proposed to be the primary enzyme responsible for oxidising the aldehydes that are produced by the 2-keto acid oxidoreductases []. This entry represents the C-terminal region of these enzymes, containing the alpha-helical structural domains 2 and 3 [, ].; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0016625 oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1B25_C 1B4N_C 1AOR_B.
Probab=30.47 E-value=82 Score=21.48 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=20.5
Q ss_pred CcccccCcchhHHHHHHHHHHHHhCCc
Q 042770 23 HFQIDLGLDNLDFVEIVMALKEEFGFE 49 (75)
Q Consensus 23 ~l~~dlglDSl~~v~l~~~le~~f~i~ 49 (75)
.+.+++|+|++.+-.++..+-+.|.--
T Consensus 118 ~lcd~~GlDtis~G~~ia~~me~~e~G 144 (382)
T PF01314_consen 118 DLCDDYGLDTISAGNTIAWAMELYEKG 144 (382)
T ss_dssp HHHHHHTB-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHCC
Confidence 344799999999999999888877443
No 98
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=29.90 E-value=34 Score=17.69 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhCCcCCcchh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~ 55 (75)
.=++...+++.|||.++.+.+
T Consensus 10 ~k~~~~k~~~~ygIdi~~~~v 30 (65)
T PF09183_consen 10 IKEIKEKIKEKYGIDISGEKV 30 (65)
T ss_dssp HHHHHHHHHT-TT---TT---
T ss_pred HHHHHHHHHHHhCcCCCccce
Confidence 346777888889999988544
No 99
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=29.22 E-value=99 Score=21.03 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhCCcCCcchh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~ 55 (75)
+-++...||+.+|+++.++.+
T Consensus 144 l~~l~~~LE~~~G~~it~e~L 164 (380)
T TIGR02263 144 LNELCEGLEHLSGKKITDDAI 164 (380)
T ss_pred HHHHHHHHHHHHCCCCCHHHH
Confidence 456899999999999999987
No 100
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=29.08 E-value=46 Score=19.44 Aligned_cols=20 Identities=20% Similarity=0.434 Sum_probs=16.9
Q ss_pred ccCcchhHHHHHHHHHHHHh
Q 042770 27 DLGLDNLDFVEIVMALKEEF 46 (75)
Q Consensus 27 dlglDSl~~v~l~~~le~~f 46 (75)
.-|.||+.++-++..+...+
T Consensus 7 SGG~DS~~ll~~l~~~~~~~ 26 (185)
T cd01993 7 SGGKDSLVLLHVLKKLQRRY 26 (185)
T ss_pred CCCHHHHHHHHHHHHHHhhc
Confidence 56999999999998887766
No 101
>COG0374 HyaB Ni,Fe-hydrogenase I large subunit [Energy production and conversion]
Probab=28.89 E-value=81 Score=22.95 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHh
Q 042770 35 FVEIVMALKEEFGFEIPDNEADIINTINMAVNFTAS 70 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~ 70 (75)
++.=+.++|+.|||.+|.... -.+++-..+.++..
T Consensus 68 a~As~~AlE~AlgItvP~nA~-~~Rni~~~~~~v~d 102 (545)
T COG0374 68 ALASVRALEDALGITVPVNAL-LIRNIMQAALFVHD 102 (545)
T ss_pred HHHHHHHHHHHhCCCCCchHH-HHHHHHHHHHHHHH
Confidence 344567899999999988764 33344444444443
No 102
>COG1316 LytR Transcriptional regulator [Transcription]
Probab=27.11 E-value=59 Score=21.54 Aligned_cols=35 Identities=9% Similarity=-0.059 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 34 DFVEIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 34 ~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
..-.++..+|+.||++|+.--.-++..+.++++.+
T Consensus 113 G~~~~~~tVe~l~gv~Id~Yv~vn~~gf~~lVDaL 147 (307)
T COG1316 113 GPRLLTQTVEKLTGVHIDHYAEVGFSGFADLVDAF 147 (307)
T ss_pred cHHHHHHHHHHHhCCCCceEEEEehHHHHHHHHHc
Confidence 35567788899999888877667788888888776
No 103
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=26.95 E-value=58 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=18.6
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHF 24 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l 24 (75)
++.+.+.+.+|+++.+.++|-.|
T Consensus 93 ~ll~~l~~~Lgi~~gett~Dg~f 115 (156)
T PRK05988 93 ALAAHAKARLGIDFHQTTADGAV 115 (156)
T ss_pred HHHHHHHHHhCCCCCCcCCCCeE
Confidence 57788888899988888888666
No 104
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=26.85 E-value=1.6e+02 Score=18.88 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=35.9
Q ss_pred HHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 5 SVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 5 ~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
+.+.+.++.++. .+.-+-+...-||=-|-..+-++..+.+.||..++..++.+
T Consensus 73 ~~~~~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~ 128 (286)
T PRK00128 73 KLLKERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAE 128 (286)
T ss_pred HHHHHhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHH
Confidence 334455555321 23445566666777888888999999999999988877633
No 105
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=26.50 E-value=80 Score=22.22 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=21.4
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~ 52 (75)
-.||-.++.+..+|.+.||+.+++
T Consensus 333 CnD~~~~~~ia~aLA~~~~~~vn~ 356 (423)
T cd01914 333 CNDSYSAIVIALALAEAFGCDVND 356 (423)
T ss_pred cccHHHHHHHHHHHHHHhCCCccc
Confidence 368999999999999999998755
No 106
>PRK10030 hypothetical protein; Provisional
Probab=26.36 E-value=1.4e+02 Score=18.50 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHH
Q 042770 3 IISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAV 65 (75)
Q Consensus 3 v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~ 65 (75)
|.++..+..|++..+..+ | .++.+.. -..-..+.++||.+||.++ ...|.+++.
T Consensus 132 V~~ay~~a~gi~lg~~~~---~-~~~~~~~---~~~~~~~~~~~~~~vP~~~--~~~~P~~l~ 185 (197)
T PRK10030 132 VWKVYQNALGMEVGEQQK---L-KEFDLSN---PLVQAKLKERYGKNIPLEE--TVVSPQAVF 185 (197)
T ss_pred HHHHHHHccCCcccccee---h-HHhcccC---hhHHHHHHHHhCCCCCCCC--CccCHHHHh
Confidence 445555555665444443 4 3555552 2233445778899998875 455565554
No 107
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=26.16 E-value=1e+02 Score=15.84 Aligned_cols=30 Identities=13% Similarity=-0.116 Sum_probs=13.4
Q ss_pred HHHHHHhCCcCCcchhhhhccHHHHHHHHH
Q 042770 40 MALKEEFGFEIPDNEADIINTINMAVNFTA 69 (75)
Q Consensus 40 ~~le~~f~i~i~~~~~~~~~tv~~l~~~i~ 69 (75)
..+.+..|..-..-++..-.|++++.+.+.
T Consensus 10 a~~re~~g~~~~~~~~~~~~tv~~L~~~l~ 39 (82)
T PLN02799 10 ARARELTGVSDMTLELPAGSTTADCLAELV 39 (82)
T ss_pred HHHHHHhCCCeEEEECCCCCcHHHHHHHHH
Confidence 344455553222222333455666655553
No 108
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=25.72 E-value=45 Score=20.70 Aligned_cols=19 Identities=37% Similarity=0.671 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhCCcCCcch
Q 042770 36 VEIVMALKEEFGFEIPDNE 54 (75)
Q Consensus 36 v~l~~~le~~f~i~i~~~~ 54 (75)
-++...|.+.||+.++.+.
T Consensus 221 ee~~~iL~~~Fgi~l~~~~ 239 (240)
T PF00797_consen 221 EELLEILKEYFGIDLDEEE 239 (240)
T ss_dssp HHHHHHHHHTS---GSS--
T ss_pred HHHHHHHHHhCCcccCCCC
Confidence 5677788889999988764
No 109
>smart00151 SWIB SWI complex, BAF60b domains.
Probab=25.56 E-value=87 Score=16.19 Aligned_cols=30 Identities=17% Similarity=0.354 Sum_probs=21.9
Q ss_pred CCCCCCCcccccCcchhHHHHHHHHHHHHh
Q 042770 17 KVTTNGHFQIDLGLDNLDFVEIVMALKEEF 46 (75)
Q Consensus 17 ~i~~~~~l~~dlglDSl~~v~l~~~le~~f 46 (75)
.+..|..+.+-+|-+++.+.++...+...|
T Consensus 46 ~i~~D~~L~~l~~~~~v~~~~~~~ll~~Hl 75 (77)
T smart00151 46 EILCDSKLEQIFGKDRMDMFEMNKLLTPHL 75 (77)
T ss_pred EEecCHHHHHHHCcCeecHHHHHHHHHHHc
Confidence 477777777666888888888877776654
No 110
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=25.13 E-value=81 Score=15.45 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.7
Q ss_pred cccCcchhHHHHHHHHHHHHhCCcCCcchh
Q 042770 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 26 ~dlglDSl~~v~l~~~le~~f~i~i~~~~~ 55 (75)
.-||=-|-..+-++..+.+.|+.+++..++
T Consensus 12 ~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l 41 (67)
T PF00288_consen 12 SGLGSSAALAVALAAALNKLFGLPLSKEEL 41 (67)
T ss_dssp SSSSHHHHHHHHHHHHHHHHTTTSSBHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHccccccHHHH
Confidence 356666777888889999999998877665
No 111
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=25.01 E-value=29 Score=18.50 Aligned_cols=69 Identities=13% Similarity=0.152 Sum_probs=38.7
Q ss_pred ChHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcc--hh--hhhccHHHHHHHHHhhhc
Q 042770 1 DPIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDN--EA--DIINTINMAVNFTASHCQ 73 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~--~~--~~~~tv~~l~~~i~~~~~ 73 (75)
+.+.+.+++.+|++++++...+.-. .. +..---.+-.+.+.+|.+++.- .| .+..||..-+.-+++++.
T Consensus 2 ~~Ii~~Va~~~~v~~~~i~~~~R~~-~~---~~aR~ia~yl~~~~~~~s~~~Ig~~fg~r~hStV~~a~~ri~~~~~ 74 (90)
T cd06571 2 ELIIEAVAEYFGISVEDLRSKSRKK-EI---ALARQIAMYLARELTGLSLPEIGRAFGGRDHSTVLHAVRKIEELLE 74 (90)
T ss_pred HHHHHHHHHHhCCCHHHHhcCCCCc-Cc---chHHHHHHHHHHHHhCCCHHHHHHHhCCCCHhHHHHHHHHHHHHHH
Confidence 4678899999999988886655442 11 2222222233344557765542 12 245566666666665543
No 112
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=24.71 E-value=38 Score=17.46 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=16.5
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~ 52 (75)
|+==+-+=-++..|+++||+++..
T Consensus 50 g~Gelhlev~~~~L~~~~~v~v~~ 73 (75)
T PF14492_consen 50 GMGELHLEVLLERLKRRFGVEVEF 73 (75)
T ss_dssp ESSHHHHHHHHHHHHHTTCEBEEE
T ss_pred ECCHHHHHHHHHHHHHHHCCeeEe
Confidence 444455555677889999998754
No 113
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.64 E-value=1.3e+02 Score=20.34 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhCCcCCcchh
Q 042770 34 DFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 34 ~~v~l~~~le~~f~i~i~~~~~ 55 (75)
.+-++...||+.+|.+|+.+.+
T Consensus 139 el~~l~~~LE~~~G~~i~~e~L 160 (377)
T TIGR03190 139 EVQRFRVFLQTLTGKEITDDML 160 (377)
T ss_pred HHHHHHHHHHHHHCCCCCHHHH
Confidence 4567889999999999999987
No 114
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=24.57 E-value=1.9e+02 Score=18.86 Aligned_cols=54 Identities=13% Similarity=0.123 Sum_probs=38.4
Q ss_pred HHHHHhhhC-CCC-C--CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 4 ISVIKNFQN-VDP-F--KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 4 ~~ii~~~~~-~~~-~--~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
...+.+..+ ..+ - .+.-+-+...-||--|-+.+..+..+.+.||..++.+++.+
T Consensus 77 ~~~~~~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~ 134 (290)
T PRK14608 77 ARALRARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAA 134 (290)
T ss_pred HHHHHHHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 344555554 322 1 34456666678899999999999999999999988877633
No 115
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair]
Probab=24.46 E-value=89 Score=20.97 Aligned_cols=20 Identities=20% Similarity=0.665 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhCCcCCcch
Q 042770 35 FVEIVMALKEEFGFEIPDNE 54 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~ 54 (75)
+++-+-.++++||+++|-..
T Consensus 240 Fl~~~~~l~~~~gv~LPkGA 259 (297)
T COG1039 240 FLQSLKQLSRQYGVQLPKGA 259 (297)
T ss_pred HHHHHHHHHHHhCCcCCCCC
Confidence 45566779999999999864
No 116
>COG3423 Nlp Predicted transcriptional regulator [Transcription]
Probab=24.34 E-value=36 Score=18.30 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.4
Q ss_pred HHHHHhhhCCCCCCCCCC
Q 042770 4 ISVIKNFQNVDPFKVTTN 21 (75)
Q Consensus 4 ~~ii~~~~~~~~~~i~~~ 21 (75)
-.+|++.+|++|++|=|.
T Consensus 50 EriIA~algv~P~eIWp~ 67 (82)
T COG3423 50 ERIIADALGVPPEEIWPS 67 (82)
T ss_pred HHHHHHHhCCCHHHhCch
Confidence 468999999998887554
No 117
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=23.99 E-value=78 Score=20.98 Aligned_cols=33 Identities=6% Similarity=-0.081 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhCCcCCcchhhhhccHHHHHHHH
Q 042770 36 VEIVMALKEEFGFEIPDNEADIINTINMAVNFT 68 (75)
Q Consensus 36 v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i 68 (75)
-..+..+|+.||++|+.--.-++..+.++++.+
T Consensus 125 ~~~~~tVe~llgi~Id~Yv~vd~~g~~~ivDal 157 (303)
T PRK09379 125 DMSVATVENFLDVPVDYYIEVNMEGFKDIVDAV 157 (303)
T ss_pred HHHHHHHHHHHCCCCceEEEEchhhHHHHHHhc
Confidence 346778899999998877767888888888765
No 118
>PRK12310 hydroxylamine reductase; Provisional
Probab=23.94 E-value=96 Score=21.92 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~ 52 (75)
-.||-.++.+..+|.+.||+.+++
T Consensus 341 CnD~~r~~~ia~aLA~alg~dvnd 364 (433)
T PRK12310 341 CNDSISAVKIALALADAFGCEVND 364 (433)
T ss_pred cccHHHHHHHHHHHHHHhCCCccc
Confidence 368999999999999999998765
No 119
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.84 E-value=2.1e+02 Score=18.66 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=38.3
Q ss_pred HHHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 4 ISVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 4 ~~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
.+.+.+.++.++. .+.-.-+...-||--|-..+..+..+.+.|+..++.+++..
T Consensus 76 ~~~~~~~~~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~ 132 (296)
T PRK14615 76 YTAFAAATGFRPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAK 132 (296)
T ss_pred HHHHHHHhCCCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHH
Confidence 3445555565432 34455566677899999999999999999999888776533
No 120
>PRK07571 bidirectional hydrogenase complex protein HoxE; Reviewed
Probab=23.75 E-value=73 Score=19.38 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=18.8
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHF 24 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l 24 (75)
+|.+.+.+.+|+++.+.++|-.|
T Consensus 106 ~ll~~l~~~Lgi~~gett~DG~f 128 (169)
T PRK07571 106 AILEDLENELGIKAGETTADGKL 128 (169)
T ss_pred HHHHHHHHHhCCCCCCcCCCCeE
Confidence 57788888899988888888766
No 121
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=23.73 E-value=2e+02 Score=18.57 Aligned_cols=53 Identities=15% Similarity=0.290 Sum_probs=36.7
Q ss_pred HHHHhhhCCCC---CCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 5 SVIKNFQNVDP---FKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 5 ~ii~~~~~~~~---~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
+.+.+.++..+ -.+.-+-+...-||=-|-+.+-.+..+.+.||..++..++.+
T Consensus 72 ~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~ 127 (287)
T PRK14616 72 KALQEYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHR 127 (287)
T ss_pred HHHHHHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 34444555432 133445556567888899999999999999999988887643
No 122
>KOG1142 consensus Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=23.49 E-value=16 Score=23.91 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=24.2
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCcchhhhhc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPDNEADIIN 59 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~~~~~~~~ 59 (75)
.-|-|..-++...||+.|++.||.....+..
T Consensus 204 KsdtlEvrDIqLhLEr~~Nm~iPgf~sd~~~ 234 (258)
T KOG1142|consen 204 KSDTVEVRDIQLHLERNFNMEIPGFSSDEKR 234 (258)
T ss_pred ccCccchhheeeeeeccccccCCCccccccc
Confidence 4456777788889999999999987664444
No 123
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=23.48 E-value=63 Score=13.28 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=9.4
Q ss_pred hccHHHHHHHHHhh
Q 042770 58 INTINMAVNFTASH 71 (75)
Q Consensus 58 ~~tv~~l~~~i~~~ 71 (75)
..|+++++.++.+-
T Consensus 6 isTIgdfvKlI~~T 19 (25)
T PF05372_consen 6 ISTIGDFVKLIIET 19 (25)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45777777777653
No 124
>PRK05290 hybrid cluster protein; Provisional
Probab=23.28 E-value=98 Score=22.55 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~ 52 (75)
--||-.++.+..+|.+.||+.+++
T Consensus 454 CnD~~~~~~ia~aLa~~~g~~vn~ 477 (546)
T PRK05290 454 CNDAYSAIVIALALAEAFGCDVND 477 (546)
T ss_pred cccHHHHHHHHHHHHHHhCCCccc
Confidence 468999999999999999998755
No 125
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=23.16 E-value=1.2e+02 Score=20.94 Aligned_cols=19 Identities=5% Similarity=0.200 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCcCCcchh
Q 042770 37 EIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 37 ~l~~~le~~f~i~i~~~~~ 55 (75)
+++..||+.+|.++..+.+
T Consensus 166 ~l~~~LE~~tG~ki~~e~L 184 (413)
T TIGR02260 166 DVIPKFEQISGVKFDIDRL 184 (413)
T ss_pred HHHHHHHHHhCCCCCHHHH
Confidence 6889999999999999987
No 126
>cd03081 TRX_Fd_NuoE_FDH_gamma TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E subfamily, NAD-dependent formate dehydrogenase (FDH) gamma subunit; composed of proteins similar to the gamma subunit of NAD-linked FDH of Ralstonia eutropha, a soluble enzyme that catalyzes the irreversible oxidation of formate to carbon dioxide accompanied by the reduction of NAD+ to NADH. FDH is a heteromeric enzyme composed of four nonidentical subunits (alpha, beta, gamma and delta). The FDH gamma subunit is closely related to NuoE, which is part of a multisubunit complex (Nuo) catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster present in NuoE. Similarly, the FDH gamma subunit is hypothesized to be involved in an electron transport chain involving other FDH subunits, upon the oxidat
Probab=23.12 E-value=81 Score=16.34 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=13.5
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHF 24 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l 24 (75)
++.+.+.+.+++.+.+.++|..|
T Consensus 19 ~ll~~l~~~l~~~~g~~~~dg~~ 41 (80)
T cd03081 19 ALAAHIKARLGIDFHETTADGSV 41 (80)
T ss_pred HHHHHHHHHhCCCCCCcCCCCeE
Confidence 45666666666665555555433
No 127
>PRK11573 hypothetical protein; Provisional
Probab=22.58 E-value=1.4e+02 Score=20.62 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=21.9
Q ss_pred HHHHHHHhCCcCCcchhhhhccHHHHHHHHHhh
Q 042770 39 VMALKEEFGFEIPDNEADIINTINMAVNFTASH 71 (75)
Q Consensus 39 ~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~ 71 (75)
+..+++.||+++|.+ ++.|++.++-..-.+
T Consensus 342 l~d~~~~l~~~l~~~---~~~Tl~G~i~~~lg~ 371 (413)
T PRK11573 342 VREINKAFNWHLPED---DARTVNGVILEALEE 371 (413)
T ss_pred HHHHHHHhCCCCCCC---CCeeHHHHHHHHhCc
Confidence 457888899999864 678998876554443
No 128
>PRK06030 hypothetical protein; Provisional
Probab=22.45 E-value=31 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.230 Sum_probs=15.8
Q ss_pred ChHHHHHHhhhCCCCCCCCC
Q 042770 1 DPIISVIKNFQNVDPFKVTT 20 (75)
Q Consensus 1 ~~v~~ii~~~~~~~~~~i~~ 20 (75)
+.|.++++++++++++++..
T Consensus 26 d~Ii~~Va~~f~I~~~di~s 45 (124)
T PRK06030 26 EAVIDLLALAFGVSGAEIAS 45 (124)
T ss_pred HHHHHHHHHHhCCCHHHHhC
Confidence 35788899999998887743
No 129
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=22.40 E-value=1.1e+02 Score=17.47 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=33.6
Q ss_pred hHHHHHHhhhCCCCCC------CCCCCCccc----------ccC--cchhHHHHHHHHHHHHhCCcCCcc
Q 042770 2 PIISVIKNFQNVDPFK------VTTNGHFQI----------DLG--LDNLDFVEIVMALKEEFGFEIPDN 53 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~------i~~~~~l~~----------dlg--lDSl~~v~l~~~le~~f~i~i~~~ 53 (75)
.+.++|....|++... +.+++++.- .+| -|=-.++.++..+.+.|++++|..
T Consensus 20 ~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~ 89 (126)
T PF12921_consen 20 SIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKE 89 (126)
T ss_pred HHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHH
Confidence 3567788888887544 444444431 111 122457888999999999999944
No 130
>PRK01212 homoserine kinase; Provisional
Probab=22.35 E-value=2.3e+02 Score=18.28 Aligned_cols=53 Identities=17% Similarity=0.080 Sum_probs=37.6
Q ss_pred HHHHhhhCCCCC---CCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 5 SVIKNFQNVDPF---KVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 5 ~ii~~~~~~~~~---~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
+.+.+.++.++. .+.-+-+...-||=-|-+.+-++..+.+.||..++.+++..
T Consensus 70 ~~~~~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~ 125 (301)
T PRK01212 70 LKFLEKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQ 125 (301)
T ss_pred HHHHHHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444555555421 24455566667888889999999999999999998877633
No 131
>KOG3196 consensus NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit [Energy production and conversion]
Probab=22.15 E-value=1.3e+02 Score=19.18 Aligned_cols=64 Identities=20% Similarity=0.077 Sum_probs=37.4
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhhc
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHCQ 73 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~~ 73 (75)
++.+.+.+.+|+...+.++|--|. +.-++=+..+=..=-+.|.+ ++.+-.|-.++++.++...+
T Consensus 131 ~i~ea~~k~lgi~~Gett~d~~Ft-------l~e~eClGaCvnaPmi~IND-~yyedlt~k~l~eIle~L~~ 194 (233)
T KOG3196|consen 131 DILEACKKQLGIKVGETTKDGLFT-------LEEVECLGACVNAPMIAIND-DYYEDLTPKKLVEILEDLKA 194 (233)
T ss_pred HHHHHHHHHhCcccccccccccee-------eecchhhhhhccCceeeecc-hhhccCCHHHHHHHHHHHhc
Confidence 466777788888888888887772 22233333332222223333 34566677777777766543
No 132
>COG5556 Uncharacterized conserved protein [Function unknown]
Probab=22.01 E-value=72 Score=17.89 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=17.2
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCcchh
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~~~~ 55 (75)
-+||...+. .++.++|||+++-..+
T Consensus 18 CFDs~S~Va--~aVkkEfGi~VsrQlv 42 (110)
T COG5556 18 CFDSPSVVA--AAVKKEFGIDVSRQLV 42 (110)
T ss_pred HcCcHHHHH--HHHHHHhcchHHHHHH
Confidence 456766653 5778999999865443
No 133
>PF05269 Phage_CII: Bacteriophage CII protein; InterPro: IPR007933 The CII protein is a transcription activator, conserved in bacteriophage lambda and related phages, that plays a key role in the decision between lytic or lysogenic phage development. CII is regulated at multiple levels including transcription, translation initiation, mRNA stability, and proteolysis []. Conditions that stabilise cII favour lysogenic development. The lambda CII protein activates three specific promoters, binding to direct repeat sequences rather than the more usual inverted repeats. Structurally, CII is a homotetramer where each monomer is composed of four alpha helices and a disordered C terminus [, ]. The alpha helical region is responsible for DNA binding and multimerisation. The homotetramer has an unusual spatial arrangement that allows recognition of the direct repeat sequences.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1ZS4_C 1ZPQ_C 1XWR_A.
Probab=21.83 E-value=1.3e+02 Score=16.54 Aligned_cols=55 Identities=16% Similarity=0.221 Sum_probs=31.1
Q ss_pred HHHhhhCCCCCCCCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 6 VIKNFQNVDPFKVTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 6 ii~~~~~~~~~~i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
-+++..|++.+.|+.= .+ +.+.-...+=..++..++++++... ...+++.+.++.
T Consensus 28 ~vA~~~Gv~eStISR~---k~-------~~~~~~a~lLa~L~~~v~~~~i~~~--~~~~~~~l~~~K 82 (91)
T PF05269_consen 28 KVAEAMGVDESTISRW---KN-------DFIEKMAMLLAALELGVEDSEIARV--AKQAAEILTKKK 82 (91)
T ss_dssp HHHHHHTSSTTTHHHH---HH-------HHHHHHHHHHHHTTTTHHHHHHHHH--HHHHHHHHHT--
T ss_pred HHHHHhCCCHHHHHHH---Hh-------hHHHHHHHHHHHHHhcccccHHHHH--HHHHHHHHHhcc
Confidence 3667778877766541 11 2344445555557788888876544 456666665443
No 134
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=21.75 E-value=1.6e+02 Score=16.15 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHhCCcCCcchh
Q 042770 31 DNLDFVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 31 DSl~~v~l~~~le~~f~i~i~~~~~ 55 (75)
+++..++.+..+...||+..+.-.+
T Consensus 48 ~~l~r~~~a~rL~~dl~in~~gial 72 (101)
T PRK10265 48 HAAIVVQRAVRLRHELALDWPGIAV 72 (101)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 4699999999999999998776543
No 135
>PF12149 HSV_VP16_C: Herpes simplex virus virion protein 16 C terminal; InterPro: IPR021051 This domain is about 30 amino acids in length. It is found in association with PF02232 from PFAM. This domain is found in the C-terminal region of the HSV virion protein 16 (alpha-TIF). This protein is a transcription promoter. The C-terminal domain is the carboxyl subdomain of the acidic transcriptional activation domain. The protein binds to DNA binding proteins to carry out its function. Such proteins include TATA binding protein, CBP, TBP-binding protein, etc. Alpha-TIF (VP16) from Herpes Simplex virus is an essential tegument protein involved in the transcriptional activation of viral immediate early (IE) promoters (alpha genes) during the lytic phase of viral infection. VP16 associates with cellular transcription factors to enhance transcription rates, including the general transcription factor TFIIB and the transcriptional coactivator PC4. The N-terminal residues of VP16 confer specificity for the IE genes, while the C-terminal residues are responsible for transcriptional activation. Within the C-terminal region are two activation regions that can independently and cooperatively activate transcription []. VP16 forms a transcriptional regulatory complex with two cellular proteins, the POU-domain transcription factor Oct-1 and the cell-proliferation factor HCF-1 []. VP16 is an alpha/beta protein with an unusual fold. Other transcription factors may have a similar topology.; PDB: 2K2U_B 2PHG_B 2PHE_C.
Probab=21.50 E-value=59 Score=13.88 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=13.1
Q ss_pred CCCCCCCCCCCcccccCcch
Q 042770 13 VDPFKVTTNGHFQIDLGLDN 32 (75)
Q Consensus 13 ~~~~~i~~~~~l~~dlglDS 32 (75)
++..++.-+..|.+.+|+|-
T Consensus 8 ld~adfefeqmftdalgid~ 27 (30)
T PF12149_consen 8 LDMADFEFEQMFTDALGIDE 27 (30)
T ss_dssp CTCCCCCHHCCCCCCCCTCC
T ss_pred chhhhHHHHHHHhhhhCccc
Confidence 45556666667777777774
No 136
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=21.25 E-value=75 Score=17.57 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=12.0
Q ss_pred hHHHHHHhhhCCCCCCC
Q 042770 2 PIISVIKNFQNVDPFKV 18 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i 18 (75)
.|.+.+.+.+|++++.+
T Consensus 80 ~i~~~l~~~lgi~~~rv 96 (116)
T PTZ00397 80 AITKILASHLKVKSERV 96 (116)
T ss_pred HHHHHHHHHhCcCcccE
Confidence 45667777788877754
No 137
>PRK11564 stationary phase inducible protein CsiE; Provisional
Probab=21.16 E-value=99 Score=21.08 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhCCcCCcchh
Q 042770 35 FVEIVMALKEEFGFEIPDNEA 55 (75)
Q Consensus 35 ~v~l~~~le~~f~i~i~~~~~ 55 (75)
+...+..+++.||+.+|++++
T Consensus 299 ~~~~~~~i~~~~~~~i~edEi 319 (426)
T PRK11564 299 TRAALAGFEQEYGVHFSDEEV 319 (426)
T ss_pred HHHHHHHHHHHhCCCCCHHHH
Confidence 344555789999999999987
No 138
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=21.00 E-value=2.5e+02 Score=18.28 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=31.9
Q ss_pred CCCCCCcccccCcchhHHHHHHHHHHHHhCCcCCcchhhh
Q 042770 18 VTTNGHFQIDLGLDNLDFVEIVMALKEEFGFEIPDNEADI 57 (75)
Q Consensus 18 i~~~~~l~~dlglDSl~~v~l~~~le~~f~i~i~~~~~~~ 57 (75)
+.-+-+...-||--|-..+-++..+.+.|+..++.+++..
T Consensus 91 i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~ 130 (293)
T TIGR00154 91 IDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAE 130 (293)
T ss_pred EeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 4455566667888899999999999999999988876633
No 139
>TIGR01703 hybrid_clust hydroxylamine reductase. This model represents a family of proteins containing an unusual 4Fe-2S-2O hydrid cluster. Earlier reports had proposed a 6Fe-6S prismane cluster. This subfamily is heterogeneous with respect to the presence or absence of a region of about 100 amino acids not far from the N-terminus of the protein. Members have been described as monomeric. The function is unknown, but is almost certain to involve oxidoreductase enzymatic activity. Members are found in E. coli and other bacteria, in Archaea, and in several parasitic eukaryotes: Giardia intestinalis, Trichomonas vaginalis, and Entamoeba histolytica.
Probab=20.67 E-value=1.2e+02 Score=21.99 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred CcchhHHHHHHHHHHHHhCCcCCc
Q 042770 29 GLDNLDFVEIVMALKEEFGFEIPD 52 (75)
Q Consensus 29 glDSl~~v~l~~~le~~f~i~i~~ 52 (75)
-.||-.++.+..+|-+.||+.+++
T Consensus 432 CnD~~~~~~ia~aLA~~~~~~vn~ 455 (522)
T TIGR01703 432 CNDAYSAIEIALKLAEVFGCDVNE 455 (522)
T ss_pred cccHHHHHHHHHHHHHHhCCCccc
Confidence 368999999999999999998755
No 140
>PRK00647 hypothetical protein; Validated
Probab=20.58 E-value=49 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=12.0
Q ss_pred hHHHHHHhhhCCCCCCC
Q 042770 2 PIISVIKNFQNVDPFKV 18 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i 18 (75)
.+++.+++.++++.+.+
T Consensus 45 ali~~LAk~l~vpks~I 61 (96)
T PRK00647 45 AVIALLAKFLSLPKRDV 61 (96)
T ss_pred HHHHHHHHHhCCChhhE
Confidence 46777888888776554
No 141
>PRK01530 hypothetical protein; Reviewed
Probab=20.46 E-value=45 Score=18.80 Aligned_cols=17 Identities=12% Similarity=0.143 Sum_probs=13.3
Q ss_pred hHHHHHHhhhCCCCCCC
Q 042770 2 PIISVIKNFQNVDPFKV 18 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i 18 (75)
.+++.+++.++++.+.+
T Consensus 57 ali~~LAk~l~v~ks~I 73 (105)
T PRK01530 57 EIINYLAKEWKLSRSNI 73 (105)
T ss_pred HHHHHHHHHhCCChhhE
Confidence 57788888888886655
No 142
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=20.39 E-value=95 Score=18.96 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=19.3
Q ss_pred hCCcCCcchhhhhccHHHHHHHHHhhh
Q 042770 46 FGFEIPDNEADIINTINMAVNFTASHC 72 (75)
Q Consensus 46 f~i~i~~~~~~~~~tv~~l~~~i~~~~ 72 (75)
||-.|+..++....+.+++.++++++.
T Consensus 183 ~g~pI~~~~~~~~~~~~~l~~~~~~~~ 209 (210)
T cd07986 183 VGRPIPPEELARFEDAEELADFLRLHT 209 (210)
T ss_pred eCCcCCHHHHhcCCCHHHHHHHHHHhc
Confidence 344456666666778999999998753
No 143
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=20.30 E-value=1.7e+02 Score=19.91 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=29.7
Q ss_pred cccCcchhHHHHHHHHHHHHhCCcCCcchh-----hhhccHHHHHH
Q 042770 26 IDLGLDNLDFVEIVMALKEEFGFEIPDNEA-----DIINTINMAVN 66 (75)
Q Consensus 26 ~dlglDSl~~v~l~~~le~~f~i~i~~~~~-----~~~~tv~~l~~ 66 (75)
+..|+|+++.-=|-+.++...|=.+-.+.+ .+-.|+.++++
T Consensus 254 d~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~E 299 (332)
T COG2255 254 DELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIE 299 (332)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHh
Confidence 688999999988888888876777766554 34456666544
No 144
>COG0245 IspF 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Lipid metabolism]
Probab=20.25 E-value=52 Score=20.03 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=18.2
Q ss_pred hHHHHHHhhhCCCCCCCCCCCCcccccC
Q 042770 2 PIISVIKNFQNVDPFKVTTNGHFQIDLG 29 (75)
Q Consensus 2 ~v~~ii~~~~~~~~~~i~~~~~l~~dlg 29 (75)
.+++-|++.++++++.++-..+=.+.||
T Consensus 111 amr~~ia~~L~i~~~~invKatT~E~LG 138 (159)
T COG0245 111 AMRANIAELLGIPVDRINVKATTTEKLG 138 (159)
T ss_pred HHHHHHHHHhCCCchheEEEEeccCccc
Confidence 5678889999998877654433333333
No 145
>PRK10344 DNA-binding transcriptional regulator Nlp; Provisional
Probab=20.23 E-value=50 Score=18.24 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.3
Q ss_pred HHHHHhhhCCCCCCCCCCC
Q 042770 4 ISVIKNFQNVDPFKVTTNG 22 (75)
Q Consensus 4 ~~ii~~~~~~~~~~i~~~~ 22 (75)
-.+|++.+|+.|++|=|.-
T Consensus 50 EriIA~aLGv~P~eIWPsR 68 (92)
T PRK10344 50 EMIIAKALGTDPWVIWPSR 68 (92)
T ss_pred HHHHHHHHCcCHHHhCccc
Confidence 4689999999998886654
No 146
>PF12482 DUF3701: Phage integrase protein; InterPro: IPR022169 This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with PF00589 from PFAM.
Probab=20.23 E-value=85 Score=17.38 Aligned_cols=17 Identities=18% Similarity=0.006 Sum_probs=13.8
Q ss_pred hhhccHHHHHHHHHhhh
Q 042770 56 DIINTINMAVNFTASHC 72 (75)
Q Consensus 56 ~~~~tv~~l~~~i~~~~ 72 (75)
..+.|++++++++..+.
T Consensus 32 aGi~TL~dL~~~i~~rg 48 (96)
T PF12482_consen 32 AGIRTLADLVDRINRRG 48 (96)
T ss_pred cCCchHHHHHHHHHHcc
Confidence 46789999999998754
Done!