BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042771
(436 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 446 bits (1148), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/446 (52%), Positives = 308/446 (69%), Gaps = 26/446 (5%)
Query: 7 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 65
++AI+ +A QED AGNY +A LY +A++YF +KYE + K K++I K TEYL R
Sbjct: 9 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 68
Query: 66 AEEIRAVLDDGGPGPAHNGDAAVATRPKTKP---KXXXXXXXXXXEDPEQAKLRAGLNSA 122
AE+++ L ++ P K +DPE+ KL+ L A
Sbjct: 69 AEKLKEYLKK-----KEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGA 123
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYL 182
I+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP FTGKR PWR LL+GPPGTGKSYL
Sbjct: 124 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183
Query: 183 AKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241
AKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R
Sbjct: 184 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 243
Query: 242 GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPD 301
E NESEA+RRIKTE LVQMQGVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP+
Sbjct: 244 SE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPE 302
Query: 302 LKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361
AR MF++HLG T ++LTE+DF+ L RKT+G+SG+DIS+ V+D L +PVRK Q A F
Sbjct: 303 AHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 362
Query: 362 FKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVL 410
K N + PC P GA++++ ++ +++L P +S D + L
Sbjct: 363 KKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVSMWDMLRSL 418
Query: 411 ARQRPTVSKSDLEVQERFTKEFGEEG 436
+ +PTV++ DL ++FT++FG+EG
Sbjct: 419 SSTKPTVNEQDLLKLKKFTEDFGQEG 444
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 409 bits (1051), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/331 (61%), Positives = 247/331 (74%), Gaps = 10/331 (3%)
Query: 111 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFL 170
+ KLR L+SAI+ EKPNVKW DVAGLE AK+AL+EAVILPVKFP F G R+P L
Sbjct: 14 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGIL 73
Query: 171 LYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIF 230
LYGPPGTGKSYLAKAVATEA+STFFS+SSSDLVSKWMGESEKLV LF MARE+ PSIIF
Sbjct: 74 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 133
Query: 231 IDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRR 290
ID++D+L G RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRR
Sbjct: 134 IDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 192
Query: 291 FDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350
F++RIYIPLPDL AR MF++++GDTP LT+ D+ +L TEG+SGSDI+V VKD L +
Sbjct: 193 FERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 252
Query: 351 PVRKTQDAMFFFKTSNG-----MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTD 405
P+RK Q A F S PC P GA+++S ++ A L E P ++ D
Sbjct: 253 PIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE----PDLTIKD 308
Query: 406 FDKVLARQRPTVSKSDLEVQERFTKEFGEEG 436
F K + RPTV++ DL QE+FT++FG+EG
Sbjct: 309 FLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 339
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 408 bits (1048), Expect = e-114, Method: Compositional matrix adjust.
Identities = 204/331 (61%), Positives = 246/331 (74%), Gaps = 10/331 (3%)
Query: 111 EQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFL 170
+ KLR L+SAI+ EKPNVKW DVAGLE AK+AL+EAVILPVKFP F G R+P L
Sbjct: 29 DNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGIL 88
Query: 171 LYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIF 230
LYGPPGTGKSYLAKAVATEA+STFFS+SSSDLVSKWMGESEKLV LF MARE+ PSIIF
Sbjct: 89 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIF 148
Query: 231 IDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRR 290
ID++D+L G RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRR
Sbjct: 149 IDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR 207
Query: 291 FDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350
F++RIYIPLPDL AR MF++++GDTP LT+ D+ +L TEG+SGSDI+V VKD L +
Sbjct: 208 FERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQ 267
Query: 351 PVRKTQDAMFFFKTSNG-----MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTD 405
P+RK Q A F S P P GA+++S ++ A L E P ++ D
Sbjct: 268 PIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKE----PDLTIKD 323
Query: 406 FDKVLARQRPTVSKSDLEVQERFTKEFGEEG 436
F K + RPTV++ DL QE+FT++FG+EG
Sbjct: 324 FLKAIKSTRPTVNEDDLLKQEQFTRDFGQEG 354
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 400 bits (1027), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/321 (62%), Positives = 241/321 (75%), Gaps = 10/321 (3%)
Query: 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKS 180
+AI+ EKPNVKW DVAGLE AK+AL+EAVILPVKFP F G R+P LLYGPPGTGKS
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 181 YLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240
YLAKAVATEA+STFFS+SSSDLVSKWMGESEKLV LF MARE+ PSIIFID++D+L G
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 241 RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLP 300
RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLP
Sbjct: 126 RGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 184
Query: 301 DLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360
DL AR MF++++GDTP LT+ D+ +L TEG+SGSDI+V VKD L +P+RK Q A
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 361 FFKTSNG-----MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415
F S PC P GA+++S ++ A L E P ++ DF K + RP
Sbjct: 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE----PDLTIKDFLKAIKSTRP 300
Query: 416 TVSKSDLEVQERFTKEFGEEG 436
TV++ DL QE+FT++FG+EG
Sbjct: 301 TVNEDDLLKQEQFTRDFGQEG 321
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 399 bits (1026), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/327 (60%), Positives = 249/327 (76%), Gaps = 17/327 (5%)
Query: 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSY 181
AI+ E+PNVKW+DVAGLE AK+AL+EAVILP+KFP FTGKR PWR LL+GPPGTGKSY
Sbjct: 1 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY 60
Query: 182 LAKAVATEAD-STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240
LAKAVATEA+ STFFSISSSDLVSKW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 241 RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLP 300
R E NESEA+RRIKTE LVQMQGVG ++ +LVL ATN P+ LD AIRRRF+KRIYIPLP
Sbjct: 121 RSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 301 DLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360
+ AR MFK+HLG T ++LTE+DF L RKT+G+SG+DIS+ V+D L +PVRK Q A
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 361 FFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKV 409
F K + + PC P GA++++ ++ +++L P +S +D +
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVSMSDMLRS 295
Query: 410 LARQRPTVSKSDLEVQERFTKEFGEEG 436
L+ +PTV++ DL ++FT++FG+EG
Sbjct: 296 LSNTKPTVNEHDLLKLKKFTEDFGQEG 322
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 397 bits (1021), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 238/318 (74%), Gaps = 10/318 (3%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLA 183
+ EKPNVKW DVAGLE AK+AL+EAVILPVKFP F G R+P LLYGPPGTGKSYLA
Sbjct: 18 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 77
Query: 184 KAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE 243
KAVATEA+STFFS+SSSDLVSKWMGESEKLV LF MARE+ PSIIFIDE+D+L G RGE
Sbjct: 78 KAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGE 137
Query: 244 GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLK 303
G ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL
Sbjct: 138 G-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLA 196
Query: 304 ARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFK 363
AR MF++++GDTP LT+ D+ +L TEG+SGSDI+V VKD L +P+RK Q A F
Sbjct: 197 ARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKD 256
Query: 364 TSNG-----MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVS 418
S PC P GA+++S ++ A L E P ++ DF K + RPTV+
Sbjct: 257 VSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE----PDLTIKDFLKAIKSTRPTVN 312
Query: 419 KSDLEVQERFTKEFGEEG 436
+ DL QE+FT++FG+EG
Sbjct: 313 EDDLLKQEQFTRDFGQEG 330
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 234 bits (598), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 125/312 (40%), Positives = 183/312 (58%), Gaps = 32/312 (10%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYL 182
I+ P V W D+AG+E AK ++E V+ P+ P FTG R P + LL+GPPGTGK+ +
Sbjct: 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLI 133
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242
K +A+++ +TFFSIS+S L SKW+GE EK+V +LF +AR P++IFIDEIDSL QRG
Sbjct: 134 GKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG 193
Query: 243 EGNESEASRRIKTELLVQMQG-VGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPD 301
+G E E+SRRIKTE LVQ+ G ++ ++LV+ ATN P +D+A RRR KR+YIPLP+
Sbjct: 194 DG-EHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPE 252
Query: 302 LKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361
AR+ + + L+E + E + ++++ FSG+D++ ++ P+R Q A
Sbjct: 253 ASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIA 312
Query: 362 FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSD 421
T + Q+ PI+ DF+ RP+VS D
Sbjct: 313 TITPD--------------QVR----------------PIAYIDFENAFRTVRPSVSPKD 342
Query: 422 LEVQERFTKEFG 433
LE+ E + K FG
Sbjct: 343 LELYENWNKTFG 354
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 233 bits (593), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/313 (42%), Positives = 191/313 (61%), Gaps = 32/313 (10%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYL 182
I+ VK++D+AG + AKQALQE VILP P+ FTG R P R LL+GPPG GK+ L
Sbjct: 105 IVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTML 164
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242
AKAVA E+++TFF+IS++ L SK++GE EKLV +LF +ARE PSIIFID++DSL +R
Sbjct: 165 AKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR 224
Query: 243 EGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPD 301
EG E +ASRR+KTE L++ GV D +VLV+ ATN P LD+A+ RRF KR+Y+ LP+
Sbjct: 225 EG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPN 283
Query: 302 LKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361
+ R + K L LT+ + LAR T+G+SGSD++ KD P+R+ +
Sbjct: 284 EETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK----- 338
Query: 362 FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSD 421
P+Q ++ ++A + I +DF + L + + +VS
Sbjct: 339 ------------PEQ-------VKNMSASEMRN------IRLSDFTESLKKIKRSVSPQT 373
Query: 422 LEVQERFTKEFGE 434
LE R+ K+FG+
Sbjct: 374 LEAYIRWNKDFGD 386
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 128/314 (40%), Positives = 180/314 (57%), Gaps = 33/314 (10%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYL 182
I+ V+W D+AG + AKQALQE VILP P+ FTG R P + LL+GPPG GK+ L
Sbjct: 11 IVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242
A+AVATE +TF +IS++ L SK++G+ EKLV +LF +AR PSIIFIDE+DSL +R
Sbjct: 71 ARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERS 130
Query: 243 EGNESEASRRIKTELLVQMQGVGHN--DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLP 300
EASRR+KTE LV+ G+ N +++VLAATN P LD+A RRF KR+Y+ LP
Sbjct: 131 SSEH-EASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP 189
Query: 301 DLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360
D + R+ + L L LA+ T+G+SGSD++ KD EP+R+
Sbjct: 190 DEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRE------ 243
Query: 361 FFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKS 420
+Q + IS A + + EQ DF L R R +V+
Sbjct: 244 -----------LNVEQVKCLDIS----AMRAITEQ---------DFHSSLKRIRRSVAPQ 279
Query: 421 DLEVQERFTKEFGE 434
L E++++++G+
Sbjct: 280 SLNSYEKWSQDYGD 293
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 179 bits (455), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 145/241 (60%), Gaps = 11/241 (4%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYL 182
+ E+PNV++ D+ GLE Q ++E V LP+K P+ F +P + LLYGPPGTGK+ L
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242
AKAVATE ++TF + S+LV K++GE LV +F++A+E APSIIFIDEID++ +R
Sbjct: 68 AKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRT 127
Query: 243 E---GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYI 297
+ G + E R + +LL +M G V ++ ATN P LD AI R RFD+ I +
Sbjct: 128 DALTGGDREVQRTL-MQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEV 185
Query: 298 PLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356
P PD K R + K+H NL E + E +A+ TEG G+++ + +R+ +
Sbjct: 186 PAPDEKGRLEILKIH--TRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR 243
Query: 357 D 357
D
Sbjct: 244 D 244
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 134/226 (59%), Gaps = 8/226 (3%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFP-QFFTGKRQPWRAFLLYGPPGTGKSYL 182
+ E P V W D+ GLE K+ LQE V PV+ P +F P + L YGPPG GK+ L
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR- 241
AKA+A E + F SI +L++ W GESE V +F AR++AP ++F DE+DS+ R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 242 -GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP 298
G+ A+ R+ ++L +M G+ + V ++ ATN P +D AI R R D+ IYIP
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 299 LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS-VC 343
LPD K+R + K +L +P + D E LA+ T GFSG+D++ +C
Sbjct: 647 LPDEKSRVAILKANLRKSPV-AKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++DV G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKL-ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 134/226 (59%), Gaps = 8/226 (3%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFP-QFFTGKRQPWRAFLLYGPPGTGKSYL 182
+ E P V W D+ GLE K+ LQE V PV+ P +F P + L YGPPG GK+ L
Sbjct: 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR- 241
AKA+A E + F SI +L++ W GESE V +F AR++AP ++F DE+DS+ R
Sbjct: 528 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 587
Query: 242 -GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP 298
G+ A+ R+ ++L +M G+ + V ++ ATN P +D AI R R D+ IYIP
Sbjct: 588 GNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 646
Query: 299 LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS-VC 343
LPD K+R + K +L +P + D E LA+ T GFSG+D++ +C
Sbjct: 647 LPDEKSRVAILKANLRKSPV-AKDVDLEFLAKMTNGFSGADLTEIC 691
Score = 155 bits (392), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++D+ G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKL-ADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 169 bits (428), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 93/226 (41%), Positives = 134/226 (59%), Gaps = 8/226 (3%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFP-QFFTGKRQPWRAFLLYGPPGTGKSYL 182
+ E P V W D+ GLE K+ LQE V PV+ P +F P + L YGPPG GK+ L
Sbjct: 6 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65
Query: 183 AKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR- 241
AKA+A E + F SI +L++ W GESE V +F AR++AP ++F DE+DS+ R
Sbjct: 66 AKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARG 125
Query: 242 -GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP 298
G+ A+ R+ ++L +M G+ + V ++ ATN P +D AI R R D+ IYIP
Sbjct: 126 GNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIP 184
Query: 299 LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS-VC 343
LPD K+R + K +L +P + D E LA+ T GFSG+D++ +C
Sbjct: 185 LPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEIC 229
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 86/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++DV G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 140/240 (58%), Gaps = 9/240 (3%)
Query: 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKSYLA 183
E+ + ++ + GL + L+E + LP+K P+ F G + P + LLYGPPGTGK+ LA
Sbjct: 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP-KGVLLYGPPGTGKTLLA 232
Query: 184 KAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR-G 242
KAVA + F +S +V K++GES +++ +F A+E P IIF+DE+D++ G+R
Sbjct: 233 KAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFS 292
Query: 243 EGNESEAS-RRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPL 299
EG ++ +R ELL QM G + Q +++ ATN P LD A+ R R D+++ IPL
Sbjct: 293 EGTSADREIQRTLMELLTQMDGFDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPL 351
Query: 300 PDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
P+ R +FK+H E DFE+ + ++GF+G+DI C + F +R +D +
Sbjct: 352 PNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHI 410
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++D+ G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++D+ G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 155 bits (393), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 135/233 (57%), Gaps = 6/233 (2%)
Query: 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVAT 188
V ++D+ G ++E V LP++ P F +P R LLYGPPGTGK+ +A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
E + FF I+ +++SK GESE + F+ A ++AP+IIFIDE+D++ +R E E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQ 306
RRI ++LL M G+ V+V+AATN P ++D A+RR RFD+ + I +PD R
Sbjct: 320 VERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 307 HMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
+ ++H + + D E +A +T G G+D++ + + +RK D +
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLI 430
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 137/235 (58%), Gaps = 15/235 (6%)
Query: 119 LNSAIIREK-PNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPP 175
L S ++ EK P+ ++ V GL + ++E + LPVK P+ F G QP + +LYGPP
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 176 GTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEID 235
GTGK+ LA+AVA D F +S ++LV K++GE ++V LF MARE APSIIF+DEID
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 236 SLCGQRGEGN---ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--R 290
S+ R EG+ +SE R + ELL Q+ G + + ++ ATN LD A+ R R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTM-LELLNQLDGF-ETSKNIKIIMATNRLDILDPALLRPGR 309
Query: 291 FDKRIYIPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDI-SVC 343
D++I P P + AR + ++H NLT + +A K G SG+D+ VC
Sbjct: 310 IDRKIEFPPPSVAARAEILRIH--SRKMNLTRGINLRKVAEKMNGCSGADVKGVC 362
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 136/238 (57%), Gaps = 10/238 (4%)
Query: 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFT--GKRQPWRAFLLYGPPGTGKSYLA 183
EKPNV++ D+AG E AK+ + E V +K+P+ + G + P + LL GPPGTGK+ LA
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLA 61
Query: 184 KAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE 243
KAVA EA FFS+ S + ++G V LF+ A++ APSIIFIDEID++ R
Sbjct: 62 KAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121
Query: 244 G---NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP 298
G + ++ + +LL +M G G + V+VLAATN P LD A+ R RFD+++ +
Sbjct: 122 GGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVD 181
Query: 299 LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356
PD R + KVH+ + + + +A+ T G +G+D++ + + R Q
Sbjct: 182 KPDFNGRVEILKVHIKGVKL-ANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQ 238
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 135/222 (60%), Gaps = 12/222 (5%)
Query: 132 WNDVAGLESAKQALQEAVIL---PVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVAT 188
+ DVAG + AK+ + E V P +F + G + P + L+ GPPGTGK+ LAKA+A
Sbjct: 11 FADVAGCDEAKEEVAELVEYLREPSRFQKL--GGKIP-KGVLMVGPPGTGKTLLAKAIAG 67
Query: 189 EADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESE 248
EA FF+IS SD V ++G V +F+ A+++AP IIFIDEID++ QRG G
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 249 ASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKA 304
R +T ++LV+M G N + ++V+AATN P LD A+ R RFD+++ + LPD++
Sbjct: 128 HDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRG 186
Query: 305 RQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346
R+ + KVH+ P + D +AR T GFSG+D++ V +
Sbjct: 187 REQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNE 227
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 140/241 (58%), Gaps = 16/241 (6%)
Query: 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAK 184
EKP+V + DV GL+ KQ ++EAV LP+ + P R LLYGPPGTGK+ L K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 185 AVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE- 243
AVA + F ++ S+ V K++GE ++V +F++ARE+APSIIFIDE+DS+ +R +
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284
Query: 244 --GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIP- 298
G++ E +RI ELL QM G + V V+ ATN LD A+ R R D++I P
Sbjct: 285 QTGSDREV-QRILIELLTQMDGFDQS-TNVKVIMATNRADTLDPALLRPGRLDRKIEFPS 342
Query: 299 LPDLKARQHMFKVHLGDTPHNLT---ESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355
L D + R+ +F G ++ E+D +SL + + SG+ I+ +++ VRK
Sbjct: 343 LRDRRERRLIF----GTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 398
Query: 356 Q 356
+
Sbjct: 399 R 399
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 149 bits (375), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 136/235 (57%), Gaps = 11/235 (4%)
Query: 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKSYLAKA 185
PNV W D+ LE ++ L A++ PV+ P F G P LL GPPG GK+ LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKA 63
Query: 186 VATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN 245
VA E+ F S+ +L++ ++GESE+ V +FQ A+ SAP +IF DE+D+LC +R +
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD-R 122
Query: 246 ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLK 303
E+ AS R+ +LL +M G+ Q+V ++AATN P +D AI R R DK +++ LP
Sbjct: 123 ETGASVRVVNQLLTEMDGL-EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 304 ARQHMFKVHL--GDTPHNLTESDFESLA--RKTEGFSGSDISVCVKDVLFEPVRK 354
R + K G P + + E++A + + ++G+D+S V++ +R+
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQ 236
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 140/245 (57%), Gaps = 15/245 (6%)
Query: 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKSY 181
+ EKP ++DV GL+ + L EA++LP+K F G R P + L+YGPPGTGK+
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTL 230
Query: 182 LAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241
LA+A A + ++TF +++ LV ++GE KLV F +A+E AP+IIFIDE+D++ +R
Sbjct: 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR 290
Query: 242 GEGNES--EASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYI 297
+ +S +R ELL Q+ G +D +V VLAATN LD A+ R R D++I
Sbjct: 291 FDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLAATNRVDVLDPALLRSGRLDRKIEF 349
Query: 298 PLPDLKARQHMFKVHLGDTPHNLTESD---FESLARKTEGFSGSDISVCVKDVLFEPVRK 354
PLP +R + ++H +T D ++ LAR T+ F+G+ + + +R
Sbjct: 350 PLPSEDSRAQILQIH----SRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405
Query: 355 TQDAM 359
Q ++
Sbjct: 406 GQSSV 410
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 148 bits (373), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 94/238 (39%), Positives = 135/238 (56%), Gaps = 14/238 (5%)
Query: 130 VKWNDVAGLESAKQALQEAVIL---PVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAV 186
V + DV G E A + L+E V P KF + G R P + LL GPPGTGK+ LA+AV
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRI--GARMP-KGILLVGPPGTGKTLLARAV 69
Query: 187 ATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246
A EA+ FF IS SD V ++G V LF A+ AP I+FIDEID++ RG G
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 247 SEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDL 302
R +T +LLV+M G + + ++V+AATN P LD A+ R RFDK+I + PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 303 KARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
R+ + ++H + P L E + E +A++T GF G+D+ V + R+ +D +
Sbjct: 189 LGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 82/211 (38%), Positives = 123/211 (58%), Gaps = 8/211 (3%)
Query: 108 EDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQ-FFTGKRQPW 166
E P ++ + + EKP+V ++DV G + + L+E V LP+ P+ F T P
Sbjct: 184 ELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP 243
Query: 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAP 226
+ LLYGPPGTGK+ A+AVA D+TF + S+LV K++GE ++V LF+MAR
Sbjct: 244 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKA 303
Query: 227 SIIFIDEIDSLCGQR---GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283
IIF DEID++ G R G G ++E R + EL+ Q+ G + V+ ATN P L
Sbjct: 304 CIIFFDEIDAVGGARFDDGAGGDNEVQRTM-LELITQLDGFDPRGN-IKVMFATNRPNTL 361
Query: 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVH 312
D A+ R R D+++ LPDL+ R ++F++H
Sbjct: 362 DPALLRPGRIDRKVEFSLPDLEGRANIFRIH 392
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 93/238 (39%), Positives = 134/238 (56%), Gaps = 14/238 (5%)
Query: 130 VKWNDVAGLESAKQALQEAVIL---PVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAV 186
V + DV G E A + L+E V P KF + G R P + LL GPPGTG + LA+AV
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRI--GARMP-KGILLVGPPGTGATLLARAV 69
Query: 187 ATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246
A EA+ FF IS SD V ++G V LF A+ AP I+FIDEID++ RG G
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 247 SEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDL 302
R +T +LLV+M G + + ++V+AATN P LD A+ R RFDK+I + PD+
Sbjct: 130 GGHDEREQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDM 188
Query: 303 KARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
R+ + ++H + P L E + E +A++T GF G+D+ V + R+ +D +
Sbjct: 189 LGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKI 244
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 134/230 (58%), Gaps = 12/230 (5%)
Query: 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR-QPWRAFLLYGPPGTGKSYLAKAV 186
P ++D+ GLES Q ++E+V LP+ P+ + +P + +LYG PGTGK+ LAKAV
Sbjct: 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 236
Query: 187 ATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR---GE 243
A + +TF I S+L+ K++G+ +L +F++A E+APSI+FIDEID++ +R
Sbjct: 237 ANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNS 296
Query: 244 GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPD 301
G E E R + ELL Q+ G + V V+ ATN LD A+ R R D++I PD
Sbjct: 297 GGEREIQRTM-LELLNQLDGF-DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPD 354
Query: 302 LKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDI-SVCVKDVLF 349
L ++ + +H + NL+E + E+L + SG+DI ++C + L
Sbjct: 355 LSTKKKILGIH--TSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLL 402
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 141 bits (356), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 132/226 (58%), Gaps = 12/226 (5%)
Query: 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTG 178
+++ E P V + DVAG E AK+ L+E V +K P F G R P + LL GPPG G
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVG 61
Query: 179 KSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLC 238
K++LA+AVA EA F + S SD V ++G V LF+ A+ AP I+FIDEID++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 239 GQRGEGNESEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKR 294
+RG G R +T +LLV+M G D ++V+AATN P LD A+ R RFD++
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 295 IYIPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSD 339
I I PD+K R+ + ++H P L E D LA++T GF G+D
Sbjct: 181 IAIDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGAD 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 140 bits (354), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 131/224 (58%), Gaps = 12/224 (5%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKS 180
++ E P V + DVAG E AK+ L+E V +K P F G R P + LL GPPG GK+
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 181 YLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240
+LA+AVA EA F + S SD V ++G V LF+ A+ AP I+FIDEID++ +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 241 RGEGNESEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIY 296
RG G R +T +LLV+M G D ++V+AATN P LD A+ R RFD++I
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 297 IPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSD 339
I PD+K R+ + ++H P L E D LA++T GF G+D
Sbjct: 207 IDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGAD 248
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 131/224 (58%), Gaps = 12/224 (5%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKS 180
++ E P V + DVAG E AK+ L+E V +K P F G R P + LL GPPG GK+
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 87
Query: 181 YLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240
+LA+AVA EA F + S SD V ++G V LF+ A+ AP I+FIDEID++ +
Sbjct: 88 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 147
Query: 241 RGEGNESEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIY 296
RG G R +T +LLV+M G D ++V+AATN P LD A+ R RFD++I
Sbjct: 148 RGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 206
Query: 297 IPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSD 339
I PD+K R+ + ++H P L E D LA++T GF G+D
Sbjct: 207 IDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGAD 248
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/224 (42%), Positives = 131/224 (58%), Gaps = 12/224 (5%)
Query: 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFF--TGKRQPWRAFLLYGPPGTGKS 180
++ E P V + DVAG E AK+ L+E V +K P F G R P + LL GPPG GK+
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIP-KGVLLVGPPGVGKT 78
Query: 181 YLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240
+LA+AVA EA F + S SD V ++G V LF+ A+ AP I+FIDEID++ +
Sbjct: 79 HLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRK 138
Query: 241 RGEGNESEASRRIKT--ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIY 296
RG G R +T +LLV+M G D ++V+AATN P LD A+ R RFD++I
Sbjct: 139 RGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIA 197
Query: 297 IPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSD 339
I PD+K R+ + ++H P L E D LA++T GF G+D
Sbjct: 198 IDAPDVKGREQILRIHARGKP--LAEDVDLALLAKRTPGFVGAD 239
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 129/227 (56%), Gaps = 18/227 (7%)
Query: 129 NVKWNDVAGLESAKQALQEAVIL---PVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKA 185
V + DVAG+ AK ++E V P +F Q G + P A LL GPPG GK+ LAKA
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQL--GAKVPKGALLL-GPPGCGKTLLAKA 58
Query: 186 VATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG--- 242
VATEA F +++ ++ V G V SLF+ AR AP I++IDEID++ +R
Sbjct: 59 VATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTM 118
Query: 243 EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLP 300
G + + +LLV+M G+G D V+VLA+TN LD A+ R R D+ ++I LP
Sbjct: 119 SGFSNTEEEQTLNQLLVEMDGMGTTDH-VIVLASTNRADILDGALMRPGRLDRHVFIDLP 177
Query: 301 DLKARQHMFKVHLGDTPHNLTESDF---ESLARKTEGFSGSDIS-VC 343
L+ R+ +F+ HL LT+S + LA T GFSG+DI+ +C
Sbjct: 178 TLQERREIFEQHLKSL--KLTQSSTFYSQRLAELTPGFSGADIANIC 222
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 9/116 (7%)
Query: 300 PDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAM 359
PDL AR MF++++GDTP LT+ D+ +L TEG+SGSDI+V VKD L +P+RK Q A
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 62
Query: 360 FFFKTSNG-----MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVL 410
F S PC P GA+++S ++ A L E P ++ DF K +
Sbjct: 63 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE----PDLTIKDFLKAI 114
>pdb|2V6X|A Chain A, Stractural Insight Into The Interaction Between
Escrt-Iii And Vps4
Length = 85
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 46/71 (64%)
Query: 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYL 63
+F + IE V++A+ D A Y +A+ Y N L+Y LKYEKNPK K+ I KFTEYL
Sbjct: 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLXLALKYEKNPKSKDLIRAKFTEYL 67
Query: 64 RRAEEIRAVLD 74
RAE+++ L+
Sbjct: 68 NRAEQLKKHLE 78
>pdb|2CPT|A Chain A, Solution Structure Of Mit Domain From Human Skd1
Length = 117
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 7 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 65
++AI+ +A QED AGNY +A LY +A++YF +KYE + K K++I K TEYL R
Sbjct: 16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75
Query: 66 AEEIRAVL 73
AE+++ L
Sbjct: 76 AEKLKEYL 83
>pdb|1WR0|A Chain A, Structural Characterization Of The Mit Domain From Human
Vps4b
Length = 81
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 7 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 65
++AI+ +A QED AGNY +A LY +A++YF +KYE + K K++I K TEYL R
Sbjct: 13 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 72
Query: 66 AEEIRAVL 73
AE+++ L
Sbjct: 73 AEKLKEYL 80
>pdb|2JQH|A Chain A, Vps4b Mit
pdb|2JQK|A Chain A, Vps4b Mit-Chmp2b Complex
Length = 89
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 47/70 (67%), Gaps = 1/70 (1%)
Query: 7 EQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRR 65
++AI+ +A QED AGNY +A LY +A++YF +KYE + K K++I K TEYL R
Sbjct: 12 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 71
Query: 66 AEEIRAVLDD 75
AE+++ L +
Sbjct: 72 AEKLKEYLKN 81
>pdb|2JQ9|A Chain A, Vps4a Mit-Chmp1a Complex
pdb|2K3W|A Chain A, Nmr Structure Of Vps4a-Mit-Chmp6
Length = 84
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-KIKEAITQKF 59
M ++ ++AI+ V +A +ED A NY +A LY +A+EYF +KYE + K KE+I K
Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60
Query: 60 TEYLRRAEEIRAVL 73
+YL RAE+++ L
Sbjct: 61 VQYLDRAEKLKDYL 74
>pdb|1YXR|A Chain A, Nmr Structure Of Vps4a Mit Domain
Length = 77
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 1 MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-KIKEAITQKF 59
M ++ ++AI+ V +A +ED A NY +A LY +A+EYF +KYE + K KE+I K
Sbjct: 1 MTTSTLQKAIDLVTKATEEDKAKNYEEALRLYQHAVEYFLHAIKYEAHSDKAKESIRAKC 60
Query: 60 TEYLRRAEEIRAVL 73
+YL RAE+++ L
Sbjct: 61 VQYLDRAEKLKDYL 74
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 27/142 (19%)
Query: 170 LLYGPPGTGKSYLAKAVA----------TEADSTFFSISSSDLV--SKWMGESEKLVSSL 217
LL G G GK+ +A+ +A AD T +S+ L+ +K+ G+ EK +L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 218 FQMARESAPSIIFIDEIDSLCGQ-RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAA 276
+ + SI+FIDEI ++ G G + +A+ IK L + K+ V+ +
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGS 321
Query: 277 T-----NTPYALDQAIRRRFDK 293
T + + D+A+ RRF K
Sbjct: 322 TTYQEFSNIFEKDRALARRFQK 343
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 57/105 (54%), Gaps = 13/105 (12%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESA--- 225
L+ GP G GK+ +A+ +A A++ F + ++ +G K V S+ + +SA
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAGGA 110
Query: 226 ------PSIIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C ++GE + ++ SR ++ +LL ++G
Sbjct: 111 IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEG 154
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESE----KLVSSLF 218
R P + LL GPP +GK+ LA +A E++ F I S D K +G SE + + +F
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIF 116
Query: 219 QMARESAPSIIFIDEIDSL 237
A +S S + +D+I+ L
Sbjct: 117 DDAYKSQLSCVVVDDIERL 135
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Query: 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESE----KLVSSLF 218
R P + LL GPP +GK+ LA +A E++ F I S D K +G SE + + +F
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIF 117
Query: 219 QMARESAPSIIFIDEIDSL 237
A +S S + +D+I+ L
Sbjct: 118 DDAYKSQLSCVVVDDIERL 136
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST- 193
+ G E+A++A VI+ + K+ RA LL GPPGTGK+ LA A+A E S
Sbjct: 39 LVGQENAREAC--GVIV-----ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
Query: 194 -FFSISSSDLVSKWMGESEKLVSS 216
F + S++ S + ++E L+ +
Sbjct: 92 PFCPMVGSEVYSTEIKKTEVLMEN 115
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWM---GESEKL----VSSLF 218
+RA +LYGPPG GK+ A VA E ++SD+ SK + G L V F
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYF 136
Query: 219 QMARESAPS-----IIFIDEIDSLCG--QRGEGNESEASRRIKTELLV 259
+ E+ +I +DE+D + G + G G ++ R+ T L++
Sbjct: 137 KHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLIL 184
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST- 193
+ G E+A++A VI+ + K+ RA LL GPPGTGK+ LA A+A E S
Sbjct: 53 LVGQENAREAC--GVIV-----ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
Query: 194 -FFSISSSDLVSKWMGESEKLVSSLFQMA-----RESAPSII 229
F S++ S + ++E L + F+ A +E P II
Sbjct: 106 PFCPXVGSEVYSTEIKKTEVLXEN-FRRAIGLRIKEGPPGII 146
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMA 221
+++P LL+GPPG GK+ LA +A E ++S + K + L +SL
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL---- 88
Query: 222 RESAPSIIFIDEIDSLCGQ 240
I+FIDEI L Q
Sbjct: 89 --EEGDILFIDEIHRLSRQ 105
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMA 221
+++P LL+GPPG GK+ LA +A E ++S + K + L +SL
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL---- 88
Query: 222 RESAPSIIFIDEIDSLCGQ 240
I+FIDEI L Q
Sbjct: 89 --EEGDILFIDEIHRLSRQ 105
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMA 221
+++P LL+GPPG GK+ LA +A E ++S + K + L +SL
Sbjct: 34 RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANSL---- 88
Query: 222 RESAPSIIFIDEIDSLCGQ 240
I+FIDEI L Q
Sbjct: 89 --EEGDILFIDEIHRLSRQ 105
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPS 227
+ +L+GPPGTGK+ LA+ +A A++ IS+ V+ + E + + Q +
Sbjct: 52 SMILWGPPGTGKTTLAEVIARYANADVERISA---VTSGVKEIREAIERARQNRNAGRRT 108
Query: 228 IIFIDEI 234
I+F+DE+
Sbjct: 109 ILFVDEV 115
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS----KWMGES-EKLVSSLFQMA-- 221
LL GP G+GK+ +A+ +A D I+ SD S ++GE E +++ L Q +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLD---IPIAISDATSLTEAGYVGEDVENILTRLLQASDW 131
Query: 222 --RESAPSIIFIDEIDSL 237
+++ I+FIDEID +
Sbjct: 132 NVQKAQKGIVFIDEIDKI 149
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV-SKWMGES-EKLVSSLFQMA----R 222
LL GP G+GK+ LA+ +A D F ++ L + ++GE E ++ L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 223 ESAPSIIFIDEIDSL 237
++ I++ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV-SKWMGES-EKLVSSLFQMA----R 222
LL GP G+GK+ LA+ +A D F ++ L + ++GE E ++ L Q +
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 223 ESAPSIIFIDEIDSL 237
++ I++ID+ID +
Sbjct: 114 KAQRGIVYIDQIDKI 128
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG GK+ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG GK+ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG GK+ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG GK+ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG GK+ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSII 229
LL GPPG G++ LA +A+E + S LV + G+ +++SL ++
Sbjct: 55 LLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ--GDMAAILTSL------ERGDVL 106
Query: 230 FIDEIDSL 237
FIDEI L
Sbjct: 107 FIDEIHRL 114
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 35.0 bits (79), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 167 RAFLLYGPPGTGKSYLAKAVATEA--DSTFFSISSSDLVSKWMGESEKL 213
RA L+ G PGTGK+ +A +A D+ F +I+ S++ S M ++E L
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEAL 119
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 170 LLYGPPGTGKSYLAKAVATEA----------DSTFFSISSSDLVS--KWMGE-SEKLVSS 216
+L G PG GK+ + + +A ++ LV+ K+ GE E+L
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGV 106
Query: 217 LFQMARESAPSIIFIDEIDSLCG 239
L +A++ I+FIDE+ ++ G
Sbjct: 107 LNDLAKQEGNVILFIDELHTMVG 129
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 33/186 (17%)
Query: 125 REKPNVKWNDVAGLESAKQAL-QEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLA 183
R K N+ W + E+ + Q VI V+ +F + P L YGPPGTGK+
Sbjct: 8 RSKENLPWVEKYRPETLDEVYGQNEVITTVR--KFVDEGKLPH--LLFYGPPGTGKTSTI 63
Query: 184 KAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPS---------IIFIDEI 234
A+A E + + S++V + ++ + + ++ A + +I +DE
Sbjct: 64 VALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEA 119
Query: 235 DSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKR 294
D++ R K + H TP L Q R RF
Sbjct: 120 DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK----------LTPALLSQCTRFRFQ-- 167
Query: 295 IYIPLP 300
PLP
Sbjct: 168 ---PLP 170
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMAR 222
++P +F+ GP G GK+ LA+A+A S+ D+ S++M + L + R
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM-SEYMEKHSTSGGQLTEKVR 576
Query: 223 ESAPSIIFIDEID 235
S++ +D I+
Sbjct: 577 RKPYSVVLLDAIE 589
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFF-------SISSSDLVSKWMGESEKLVSSLFQMAR 222
+L G PG GK+ +A+ +A + + + + D+ +K+ GE E + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 223 ESAPSIIFID 232
++ I+FID
Sbjct: 265 QAGNIILFID 274
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 68/153 (44%), Gaps = 21/153 (13%)
Query: 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI--SSSDLVSKWMGESEK--LVSSLFQMA 221
+ +YG GTGK++L +A EA + + SS+D ++ M E K ++ M
Sbjct: 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY 96
Query: 222 RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281
+ + ++ +D++ L G+ E + E T L++ Q ++LA+ P
Sbjct: 97 K--SVDLLLLDDVQFLSGK--ERTQIEFFHIFNTLYLLEKQ---------IILASDRHPQ 143
Query: 282 ALDQAIRR---RFDKRIYIPLP-DLKARQHMFK 310
LD R RF+ I + + D K R + K
Sbjct: 144 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIK 176
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI--SSSDLVSKWMGESEK--LVSSLFQMA 221
+ +YG GTGK++L +A EA + + SS+D ++ M E K ++ M
Sbjct: 36 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMY 95
Query: 222 RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281
+ + ++ +D++ L G+ E + E T L++ Q ++LA+ P
Sbjct: 96 K--SVDLLLLDDVQFLSGK--ERTQIEFFHIFNTLYLLEKQ---------IILASDRHPQ 142
Query: 282 ALDQAIRR---RFDKRIYIPLP-DLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334
LD R RF+ I + + D K R + K L + L + + L T+
Sbjct: 143 KLDGVSDRLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKN 199
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 167 RAFLLYGPPGTGKSYLA--KAVATEADSTFFSISSSDLVSKWMGESEKLVS----SLFQM 220
RA L+ G PGTGK+ +A A A D+ F +I+ S++ S ++E L S+
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQAFRRSIGVR 145
Query: 221 ARESAPSIIF---IDEIDSL 237
+E P ++ + EID +
Sbjct: 146 IKEGPPGVVHTVSLHEIDVI 165
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 13/83 (15%)
Query: 170 LLYGPPGTGKSYLAKAVATEA------DST----FFSISSSDLVS--KWMGESEKLVSSL 217
+L G PG GK+ + + +A + DS S+ S L++ K+ G+ E+ + S+
Sbjct: 47 ILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSI 106
Query: 218 FQMARESAPSII-FIDEIDSLCG 239
+ +++ ++ FIDEI ++ G
Sbjct: 107 LKEVQDAEGQVVMFIDEIHTVVG 129
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 170 LLYGPPGTGKSYLAKAVATEADSTFF-------SISSSDLVSKWMGESEKLVSSLFQMAR 222
+L G PG GK+ +A+ +A + + + + D+ +K+ GE E + + R
Sbjct: 205 VLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLKKVMDEIR 264
Query: 223 ESAPSIIFID 232
++ I+FID
Sbjct: 265 QAGNIILFID 274
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL--------VSKWMGESEKLV- 214
+P +FL GP G GK+ LAK +A T ++ D+ VS+ +G V
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 645
Query: 215 ----SSLFQMARESAPSIIFIDEID 235
L + R S+I DEI+
Sbjct: 646 YEEGGQLTEAVRRRPYSVILFDEIE 670
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 170 LLYGPPGTGKSYLAKAVATEA----------DSTFFSISSSDLVS--KWMGESEKLVSSL 217
+L G PG GK+ + + +A S+ L++ K+ GE E+ + ++
Sbjct: 195 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 254
Query: 218 FQ-MARESAPSIIFIDEIDSLCG 239
Q + + I+FIDE+ ++ G
Sbjct: 255 IQEVVQSQGEVILFIDELHTVVG 277
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSIS 198
L GPPG GK+ LAK++A F IS
Sbjct: 111 LCLAGPPGVGKTSLAKSIAKSLGRKFVRIS 140
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 20/95 (21%), Positives = 45/95 (47%), Gaps = 4/95 (4%)
Query: 171 LYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLF----QMARESAP 226
++G G GKS+ + V + +S+ +L S GE KL+ + ++ R+
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNM 100
Query: 227 SIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261
+FI+++D+ G+ G + + ++ L+ +
Sbjct: 101 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 135
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 23/83 (27%)
Query: 169 FLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSSDLVSKWMGESEKLVSSLFQMARE 223
L GPPG GK+ A A+A E F +++SD E+ ++ + + +E
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD---------ERGINVIREKVKE 99
Query: 224 SAPS---------IIFIDEIDSL 237
A + IIF+DE D+L
Sbjct: 100 FARTKPIGGASFKIIFLDEADAL 122
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 228 IIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C +RGE + + SR ++ +LL ++G
Sbjct: 251 IVFIDEIDKIC-KRGESSGPDVSREGVQRDLLPLVEG 286
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSI 228
L+ GP G GK+ +A+ +A A++ F + ++ +G K V S+ + ++A +
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKM 109
Query: 229 IFIDEID 235
+ + I+
Sbjct: 110 VRVQAIE 116
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 228 IIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C +RGE + + SR ++ +LL ++G
Sbjct: 258 IVFIDEIDKIC-KRGESSGPDVSREGVQRDLLPLVEG 293
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSI 228
L+ GP G GK+ +A+ +A A++ F + ++ +G K V S+ + ++A +
Sbjct: 59 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKM 116
Query: 229 IFIDEID 235
+ + I+
Sbjct: 117 VRVQAIE 123
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 170 LLYGPPGTGKSYLAKAVA---TEAD-------STFFSISSSDLVS--KWMGESEKLVSSL 217
+L G PG GK+ + + +A + D S+ L++ K+ GE E+ + ++
Sbjct: 58 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAV 117
Query: 218 FQ-MARESAPSIIFIDEIDSLCG 239
Q + + I+FIDE+ ++ G
Sbjct: 118 IQEVVQSQGEVILFIDELHTVVG 140
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 228 IIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C +RGE + + SR ++ +LL ++G
Sbjct: 252 IVFIDEIDKIC-KRGESSGPDVSREGVQRDLLPLVEG 287
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSI 228
L+ GP G GK+ +A+ +A A++ F + ++ +G K V S+ + ++A +
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDAAVKM 110
Query: 229 IFIDEID 235
+ + I+
Sbjct: 111 VRVQAIE 117
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI---SSSDLVSKWMGESEKLVSSLFQMAR 222
+ +YG GTGK++L +A EA + + S+ D + +K + F+
Sbjct: 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXY 96
Query: 223 ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282
+S ++ +D++ L G+ E + E T L++ Q ++LA+ P
Sbjct: 97 KSV-DLLLLDDVQFLSGK--ERTQIEFFHIFNTLYLLEKQ---------IILASDRHPQK 144
Query: 283 LDQAIRR---RFDKRIYIPLP-DLKARQHMFK 310
LD R RF+ I + + D K R + K
Sbjct: 145 LDGVSDRLVSRFEGGILVEIELDNKTRFKIIK 176
>pdb|2W2U|A Chain A, Structural Insight Into The Interaction Between Archaeal
Escrt-Iii And Aaa-Atpase
pdb|2W2U|B Chain B, Structural Insight Into The Interaction Between Archaeal
Escrt-Iii And Aaa-Atpase
Length = 83
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 30/69 (43%)
Query: 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLR 64
+E A +Y AV+ D GN +A Y A+E + ++ Q EY R
Sbjct: 15 LEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKR 74
Query: 65 RAEEIRAVL 73
R E ++ ++
Sbjct: 75 RIEVLKELI 83
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL--------VSKWMGESEKLV- 214
+P +FL GP G GK+ LAK +A T ++ D+ VS+ +G V
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVG 101
Query: 215 ----SSLFQMARESAPSIIFIDEID 235
L + R S+I D I+
Sbjct: 102 YEEGGQLTEAVRRRPYSVILFDAIE 126
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSI 228
L+ GP G GK+ +A+ +A A++ F + ++ +G K V S+ + +SA +
Sbjct: 53 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAMKL 110
Query: 229 IFIDEI 234
+ EI
Sbjct: 111 VRQQEI 116
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 228 IIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C ++GE + ++ SR ++ +LL ++G
Sbjct: 253 IVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEG 288
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 174 PPGTGKSYLAKAVATEADSTFFSISSS 200
PPGT + +A+AVA EA FS++S+
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASN 173
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Query: 228 IIFIDEIDSLCGQRGEGNESEASRR-IKTELLVQMQG 263
I+FIDEID +C ++GE + ++ SR ++ +LL ++G
Sbjct: 253 IVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEG 288
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSI 228
L GP G GK+ +A+ +A A++ F + ++ +G K V S+ + +SA +
Sbjct: 53 ILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTE--VGYVGKEVDSIIRDLTDSAXKL 110
Query: 229 IFIDEI 234
+ EI
Sbjct: 111 VRQQEI 116
>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
And Its Substrate Gmp At 2.0 Angstroms Resolution
Length = 187
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 167 RAFLLYGPPGTGKSYLAKAVATEADSTF-FSISSS 200
R ++ GP GTGKS L K + E +F FS+SS+
Sbjct: 3 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 37
>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
From Yeast
pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
With Guanosine-5'-Monophosphate
Length = 186
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 167 RAFLLYGPPGTGKSYLAKAVATEADSTF-FSISSS 200
R ++ GP GTGKS L K + E +F FS+SS+
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSST 36
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198
R +L G PGTGKS KAVA A+S +
Sbjct: 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVG 236
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARE---SA 225
L GPPGTGK+ A A+A + F + D + E+ + + +E +A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 226 P------SIIFIDEIDSL 237
P IIF+DE D+L
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARE---SA 225
L GPPGTGK+ A A+A + F + D + E+ + + +E +A
Sbjct: 41 LLFSGPPGTGKTATAIALARD----LFGENWRDNFIEMNASDERGIDVVRHKIKEFARTA 96
Query: 226 P------SIIFIDEIDSL 237
P IIF+DE D+L
Sbjct: 97 PIGGAPFKIIFLDEADAL 114
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 169 FLLYGP-PGTGKSYLAKAVATEADSTFFSISSSD 201
+L+ P PGTGK+ +AKA+ + ++ ++ SD
Sbjct: 50 IILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83
>pdb|1ZP6|A Chain A, Crystal Structure Of Atu3015, A Putative Cytidylate Kinase
From Agrobacterium Tumefaciens, Northeast Structural
Genomics Target Atr62
Length = 191
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL--------VSKWMGESEKLVSSLFQM 220
LL G PG+GKS +A+A+A S DL + W+ +S + + Q+
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRXIXQI 71
Query: 221 ARESA 225
A + A
Sbjct: 72 AADVA 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,407,293
Number of Sequences: 62578
Number of extensions: 487713
Number of successful extensions: 1686
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 116
length of query: 436
length of database: 14,973,337
effective HSP length: 102
effective length of query: 334
effective length of database: 8,590,381
effective search space: 2869187254
effective search space used: 2869187254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)