Query 042771
Match_columns 436
No_of_seqs 423 out of 3718
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 09:17:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739 AAA+-type ATPase [Post 100.0 2.2E-87 4.7E-92 597.4 35.6 429 1-436 1-439 (439)
2 KOG0738 AAA+-type ATPase [Post 100.0 3.2E-62 6.9E-67 450.7 36.0 296 114-435 193-491 (491)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.9E-52 4.1E-57 410.4 24.5 267 122-431 423-692 (693)
4 COG1222 RPT1 ATP-dependent 26S 100.0 3.9E-51 8.4E-56 375.3 23.8 253 119-415 137-394 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 7.8E-51 1.7E-55 393.6 26.0 287 119-433 497-789 (802)
6 KOG0736 Peroxisome assembly fa 100.0 5.8E-49 1.3E-53 389.4 26.4 286 122-433 661-952 (953)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 2.9E-46 6.3E-51 361.9 24.9 305 125-432 182-523 (802)
8 KOG0740 AAA+-type ATPase [Post 100.0 5.5E-46 1.2E-50 356.0 19.8 292 115-436 135-427 (428)
9 KOG0737 AAA+-type ATPase [Post 100.0 6.3E-45 1.4E-49 336.5 24.3 300 120-435 79-383 (386)
10 TIGR01243 CDC48 AAA family ATP 100.0 2.1E-42 4.6E-47 366.8 28.8 284 125-434 445-731 (733)
11 KOG0734 AAA+-type ATPase conta 100.0 2E-42 4.4E-47 330.4 19.6 225 128-356 299-526 (752)
12 COG1223 Predicted ATPase (AAA+ 100.0 5.4E-41 1.2E-45 295.0 19.3 244 126-416 114-358 (368)
13 COG0464 SpoVK ATPases of the A 100.0 4.6E-40 9.9E-45 335.6 25.4 258 122-428 231-492 (494)
14 CHL00195 ycf46 Ycf46; Provisio 100.0 3.5E-39 7.6E-44 321.6 27.0 257 127-431 222-483 (489)
15 KOG0727 26S proteasome regulat 100.0 9.3E-40 2E-44 286.1 19.5 231 124-356 146-381 (408)
16 KOG0735 AAA+-type ATPase [Post 100.0 2.8E-39 6E-44 318.0 24.5 271 128-434 662-937 (952)
17 PTZ00454 26S protease regulato 100.0 2.3E-38 5E-43 309.6 30.8 252 121-416 133-389 (398)
18 KOG0728 26S proteasome regulat 100.0 1.7E-39 3.6E-44 284.3 19.3 259 118-420 132-395 (404)
19 KOG0731 AAA+-type ATPase conta 100.0 4.2E-39 9.1E-44 325.9 23.0 230 125-356 303-538 (774)
20 KOG0652 26S proteasome regulat 100.0 7.4E-39 1.6E-43 281.7 18.6 257 114-414 152-413 (424)
21 KOG0726 26S proteasome regulat 100.0 4.1E-39 8.8E-44 287.3 14.8 246 124-413 176-426 (440)
22 PRK03992 proteasome-activating 100.0 7E-38 1.5E-42 308.0 24.5 256 121-420 119-379 (389)
23 KOG0729 26S proteasome regulat 100.0 1.1E-37 2.4E-42 275.1 18.1 247 123-413 167-418 (435)
24 PTZ00361 26 proteosome regulat 100.0 5.9E-37 1.3E-41 301.3 22.3 249 122-414 172-425 (438)
25 TIGR01241 FtsH_fam ATP-depende 100.0 3.8E-36 8.2E-41 305.8 26.2 248 123-415 45-297 (495)
26 COG0465 HflB ATP-dependent Zn 100.0 2.5E-36 5.4E-41 301.2 18.8 227 127-356 144-375 (596)
27 TIGR01242 26Sp45 26S proteasom 100.0 1.9E-34 4.2E-39 282.7 24.5 249 121-413 110-363 (364)
28 KOG0730 AAA+-type ATPase [Post 100.0 1E-34 2.3E-39 285.7 22.0 222 128-354 180-404 (693)
29 TIGR03689 pup_AAA proteasome A 100.0 3.3E-34 7.1E-39 285.3 25.3 285 119-412 168-477 (512)
30 CHL00176 ftsH cell division pr 100.0 6.7E-34 1.5E-38 292.3 25.0 243 126-413 176-423 (638)
31 KOG0651 26S proteasome regulat 100.0 5.1E-34 1.1E-38 257.1 14.0 237 118-356 117-358 (388)
32 TIGR01243 CDC48 AAA family ATP 100.0 3.9E-32 8.5E-37 288.5 26.4 266 126-417 171-439 (733)
33 KOG0732 AAA+-type ATPase conta 100.0 5.6E-33 1.2E-37 288.4 18.8 231 126-358 258-496 (1080)
34 PRK10733 hflB ATP-dependent me 100.0 5.5E-32 1.2E-36 281.4 24.7 246 126-416 145-395 (644)
35 KOG0741 AAA+-type ATPase [Post 100.0 1.2E-31 2.6E-36 256.6 15.1 273 127-427 213-506 (744)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 1.2E-30 2.5E-35 281.7 20.1 188 162-356 1626-1862(2281)
37 PLN00020 ribulose bisphosphate 100.0 3.4E-30 7.3E-35 241.3 20.2 222 128-355 110-355 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 1.7E-23 3.7E-28 197.2 19.3 215 133-357 23-260 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 5.3E-23 1.2E-27 192.6 20.7 216 131-356 4-243 (261)
40 PF05496 RuvB_N: Holliday junc 99.9 2E-23 4.3E-28 184.0 15.9 196 124-347 15-225 (233)
41 TIGR02880 cbbX_cfxQ probable R 99.9 9.1E-23 2E-27 192.4 21.3 214 134-357 23-259 (284)
42 KOG0736 Peroxisome assembly fa 99.9 2.7E-22 5.7E-27 200.5 21.3 239 166-431 431-683 (953)
43 KOG0735 AAA+-type ATPase [Post 99.9 3.5E-22 7.6E-27 197.9 19.7 249 133-429 408-676 (952)
44 COG2256 MGS1 ATPase related to 99.9 5.6E-22 1.2E-26 186.2 19.7 188 123-351 14-217 (436)
45 KOG0744 AAA+-type ATPase [Post 99.9 7.8E-23 1.7E-27 185.9 13.0 183 131-314 140-341 (423)
46 KOG0742 AAA+-type ATPase [Post 99.9 6.7E-22 1.4E-26 184.8 18.5 215 126-348 348-589 (630)
47 COG2255 RuvB Holliday junction 99.9 2.7E-21 5.9E-26 173.5 21.1 237 126-432 19-273 (332)
48 PF00004 AAA: ATPase family as 99.9 4.2E-22 9.1E-27 166.8 14.9 130 169-299 1-132 (132)
49 PRK00080 ruvB Holliday junctio 99.9 8.2E-21 1.8E-25 183.8 24.8 201 124-352 16-231 (328)
50 KOG0743 AAA+-type ATPase [Post 99.9 9.9E-22 2.2E-26 187.7 16.1 205 129-343 197-412 (457)
51 TIGR00635 ruvB Holliday juncti 99.9 3.8E-20 8.3E-25 177.8 24.1 193 131-351 2-209 (305)
52 PRK07003 DNA polymerase III su 99.9 2E-20 4.3E-25 190.6 22.1 195 121-349 4-226 (830)
53 PRK12323 DNA polymerase III su 99.9 1.6E-20 3.5E-25 189.0 21.0 195 121-349 4-231 (700)
54 PRK14956 DNA polymerase III su 99.9 1.4E-20 3.1E-25 185.2 19.6 194 121-348 6-227 (484)
55 TIGR02639 ClpA ATP-dependent C 99.9 4.6E-20 9.9E-25 195.8 22.4 258 116-432 165-452 (731)
56 PRK14962 DNA polymerase III su 99.8 9.3E-20 2E-24 182.4 20.4 188 123-344 4-219 (472)
57 PRK14960 DNA polymerase III su 99.8 2.4E-19 5.2E-24 181.1 23.0 195 121-349 3-225 (702)
58 PRK14949 DNA polymerase III su 99.8 3.7E-19 8.1E-24 184.7 24.5 193 122-348 5-225 (944)
59 TIGR00763 lon ATP-dependent pr 99.8 1.2E-18 2.7E-23 185.9 29.3 206 134-355 321-558 (775)
60 PRK14958 DNA polymerase III su 99.8 1.1E-19 2.4E-24 183.7 19.5 195 121-349 4-226 (509)
61 PRK07994 DNA polymerase III su 99.8 4.4E-19 9.6E-24 181.6 23.8 193 122-348 5-225 (647)
62 KOG2028 ATPase related to the 99.8 1.7E-19 3.6E-24 166.7 18.0 234 122-434 127-389 (554)
63 PRK04195 replication factor C 99.8 2E-19 4.4E-24 182.5 20.4 196 122-349 3-205 (482)
64 PRK14961 DNA polymerase III su 99.8 4.7E-19 1E-23 173.4 20.3 193 122-348 5-225 (363)
65 PLN03025 replication factor C 99.8 2.8E-19 6.2E-24 172.3 18.4 188 122-347 2-201 (319)
66 PRK06645 DNA polymerase III su 99.8 5.9E-19 1.3E-23 177.2 21.1 202 121-350 9-236 (507)
67 KOG0989 Replication factor C, 99.8 8.7E-19 1.9E-23 159.1 20.1 188 121-343 24-227 (346)
68 KOG2004 Mitochondrial ATP-depe 99.8 6.9E-18 1.5E-22 168.0 26.1 214 133-355 411-653 (906)
69 PRK14964 DNA polymerase III su 99.8 7.2E-19 1.6E-23 175.2 19.1 194 123-350 3-224 (491)
70 TIGR02902 spore_lonB ATP-depen 99.8 5.5E-19 1.2E-23 180.4 18.3 208 120-354 52-315 (531)
71 PRK08691 DNA polymerase III su 99.8 7.3E-19 1.6E-23 179.2 19.0 196 121-350 4-227 (709)
72 PRK14963 DNA polymerase III su 99.8 1.8E-18 3.9E-23 174.5 20.8 192 123-348 4-222 (504)
73 COG0542 clpA ATP-binding subun 99.8 2.4E-18 5.1E-23 176.9 21.1 207 135-356 493-759 (786)
74 PRK14969 DNA polymerase III su 99.8 2E-18 4.3E-23 175.7 19.3 196 121-350 4-227 (527)
75 PRK14951 DNA polymerase III su 99.8 1.6E-18 3.4E-23 177.3 18.5 196 121-350 4-232 (618)
76 PRK14959 DNA polymerase III su 99.8 3.3E-18 7.1E-23 173.8 20.3 191 122-346 5-223 (624)
77 COG0466 Lon ATP-dependent Lon 99.8 4.8E-17 1.1E-21 162.9 27.9 212 133-353 323-563 (782)
78 PRK13342 recombination factor 99.8 6.1E-18 1.3E-22 168.6 21.6 188 123-348 2-201 (413)
79 PRK14957 DNA polymerase III su 99.8 4.6E-18 1E-22 171.8 19.8 193 122-348 5-225 (546)
80 PRK07764 DNA polymerase III su 99.8 1.1E-17 2.4E-22 176.7 23.3 196 123-348 5-226 (824)
81 PRK00149 dnaA chromosomal repl 99.8 7.5E-18 1.6E-22 169.9 20.3 201 127-351 116-330 (450)
82 PRK12402 replication factor C 99.8 8.6E-18 1.9E-22 163.8 20.1 194 122-347 4-227 (337)
83 PRK07133 DNA polymerase III su 99.8 1.9E-17 4.1E-22 170.6 23.3 200 121-348 6-224 (725)
84 PRK05563 DNA polymerase III su 99.8 9.3E-18 2E-22 172.0 20.6 194 122-349 5-226 (559)
85 PRK14952 DNA polymerase III su 99.8 8.7E-18 1.9E-22 171.3 20.2 193 123-349 3-225 (584)
86 PRK11034 clpA ATP-dependent Cl 99.8 2E-17 4.4E-22 173.6 22.8 214 116-350 169-408 (758)
87 PRK05896 DNA polymerase III su 99.8 8.6E-18 1.9E-22 169.9 19.0 193 122-348 5-225 (605)
88 PRK14965 DNA polymerase III su 99.8 6E-18 1.3E-22 174.2 18.3 193 122-348 5-225 (576)
89 PRK07940 DNA polymerase III su 99.8 1.3E-17 2.8E-22 163.3 19.2 185 131-343 3-214 (394)
90 TIGR03345 VI_ClpV1 type VI sec 99.8 1.6E-17 3.6E-22 177.5 21.5 214 115-350 169-409 (852)
91 TIGR00362 DnaA chromosomal rep 99.8 2.9E-17 6.3E-22 163.7 21.3 202 127-352 104-319 (405)
92 TIGR00390 hslU ATP-dependent p 99.8 5E-18 1.1E-22 163.4 15.1 217 135-351 14-404 (441)
93 PRK08451 DNA polymerase III su 99.8 2.9E-17 6.2E-22 165.2 20.5 196 122-351 3-226 (535)
94 PHA02544 44 clamp loader, smal 99.8 2.5E-17 5.5E-22 159.0 19.4 192 121-345 9-208 (316)
95 PRK13341 recombination factor 99.8 1.4E-17 3.1E-22 174.0 18.6 189 122-348 17-222 (725)
96 COG2812 DnaX DNA polymerase II 99.8 3.5E-18 7.7E-23 169.6 13.2 203 121-351 4-228 (515)
97 PRK06305 DNA polymerase III su 99.8 6.6E-17 1.4E-21 161.7 22.3 192 121-346 5-225 (451)
98 TIGR02397 dnaX_nterm DNA polym 99.8 2.9E-17 6.4E-22 161.2 19.6 194 122-349 3-224 (355)
99 PRK06893 DNA replication initi 99.8 6.8E-17 1.5E-21 148.1 19.7 191 126-347 9-207 (229)
100 PRK14086 dnaA chromosomal repl 99.8 2.1E-16 4.5E-21 159.9 24.5 200 128-351 283-496 (617)
101 COG0464 SpoVK ATPases of the A 99.8 7.8E-17 1.7E-21 164.8 21.6 239 152-431 3-253 (494)
102 PRK05201 hslU ATP-dependent pr 99.8 9E-18 2E-22 161.8 13.7 217 135-351 17-406 (443)
103 PRK14955 DNA polymerase III su 99.8 4.9E-17 1.1E-21 161.0 19.1 199 122-348 5-233 (397)
104 PRK08084 DNA replication initi 99.8 1.3E-16 2.8E-21 146.8 20.4 188 127-347 16-213 (235)
105 PRK14953 DNA polymerase III su 99.7 5.2E-17 1.1E-21 163.4 19.1 194 122-349 5-226 (486)
106 PRK06647 DNA polymerase III su 99.7 5.3E-17 1.2E-21 165.8 19.3 193 122-348 5-225 (563)
107 PRK14954 DNA polymerase III su 99.7 1.3E-16 2.8E-21 163.8 22.1 198 122-347 5-232 (620)
108 PRK09111 DNA polymerase III su 99.7 6.4E-17 1.4E-21 165.9 19.7 200 121-348 12-238 (598)
109 PRK12422 chromosomal replicati 99.7 2.5E-16 5.5E-21 156.9 22.9 203 127-348 105-318 (445)
110 PRK14088 dnaA chromosomal repl 99.7 1.2E-16 2.6E-21 159.7 20.3 202 126-351 98-313 (440)
111 PRK00440 rfc replication facto 99.7 1.8E-16 4E-21 153.2 20.8 191 121-346 5-206 (319)
112 PRK10865 protein disaggregatio 99.7 6E-17 1.3E-21 173.8 18.6 198 116-335 161-380 (857)
113 PRK14948 DNA polymerase III su 99.7 3.7E-16 8E-21 161.4 23.7 190 123-346 6-225 (620)
114 PRK05342 clpX ATP-dependent pr 99.7 1.2E-16 2.7E-21 157.1 18.9 222 135-356 73-383 (412)
115 TIGR02928 orc1/cdc6 family rep 99.7 1.6E-16 3.5E-21 156.6 19.9 270 131-434 13-326 (365)
116 PTZ00112 origin recognition co 99.7 1.5E-16 3.2E-21 163.3 19.1 192 133-344 755-979 (1164)
117 PRK14970 DNA polymerase III su 99.7 1.7E-16 3.7E-21 156.3 18.9 198 122-348 6-214 (367)
118 CHL00095 clpC Clp protease ATP 99.7 1.1E-16 2.5E-21 171.9 19.2 209 119-349 165-399 (821)
119 PRK08903 DnaA regulatory inact 99.7 6.3E-16 1.4E-20 142.0 20.5 186 126-349 11-205 (227)
120 TIGR03346 chaperone_ClpB ATP-d 99.7 3E-16 6.5E-21 169.1 20.6 213 115-349 155-394 (852)
121 CHL00095 clpC Clp protease ATP 99.7 1.2E-15 2.7E-20 163.9 24.4 208 134-356 510-786 (821)
122 PRK10787 DNA-binding ATP-depen 99.7 2.9E-16 6.3E-21 166.2 19.0 205 134-355 323-559 (784)
123 PRK00411 cdc6 cell division co 99.7 6.5E-16 1.4E-20 153.8 20.5 208 130-355 27-266 (394)
124 PRK11034 clpA ATP-dependent Cl 99.7 3.3E-16 7.1E-21 164.6 19.1 207 135-356 460-720 (758)
125 TIGR03420 DnaA_homol_Hda DnaA 99.7 1.7E-15 3.6E-20 139.1 21.6 192 128-353 10-211 (226)
126 TIGR00382 clpX endopeptidase C 99.7 3.4E-16 7.4E-21 153.1 17.4 222 135-356 79-389 (413)
127 TIGR02903 spore_lon_C ATP-depe 99.7 6.9E-15 1.5E-19 152.6 26.8 201 121-348 142-399 (615)
128 TIGR03345 VI_ClpV1 type VI sec 99.7 1.5E-15 3.3E-20 162.6 22.3 205 134-356 567-835 (852)
129 PF00308 Bac_DnaA: Bacterial d 99.7 2.1E-15 4.5E-20 137.1 20.0 200 127-350 2-215 (219)
130 PRK14950 DNA polymerase III su 99.7 6.5E-16 1.4E-20 159.9 18.9 192 123-348 6-226 (585)
131 PRK08727 hypothetical protein; 99.7 7.8E-15 1.7E-19 134.8 23.6 175 127-334 13-196 (233)
132 PRK14087 dnaA chromosomal repl 99.7 5.3E-15 1.1E-19 148.1 24.3 201 129-353 111-329 (450)
133 PRK05642 DNA replication initi 99.7 6.9E-15 1.5E-19 135.2 22.0 161 166-348 45-213 (234)
134 PF05673 DUF815: Protein of un 99.7 3.8E-15 8.3E-20 133.5 18.9 194 125-346 19-244 (249)
135 TIGR03346 chaperone_ClpB ATP-d 99.7 1.2E-14 2.5E-19 156.9 26.1 209 133-356 565-830 (852)
136 PRK14971 DNA polymerase III su 99.7 1.9E-15 4.1E-20 156.2 19.2 193 122-348 6-227 (614)
137 PRK06620 hypothetical protein; 99.7 6.4E-15 1.4E-19 133.2 20.4 176 126-346 9-192 (214)
138 KOG0991 Replication factor C, 99.7 6.6E-16 1.4E-20 134.9 12.7 192 121-347 15-215 (333)
139 TIGR02639 ClpA ATP-dependent C 99.7 3.3E-15 7.2E-20 158.9 20.6 208 134-356 455-716 (731)
140 COG0593 DnaA ATPase involved i 99.7 7.8E-15 1.7E-19 141.9 20.8 209 126-355 80-298 (408)
141 COG1224 TIP49 DNA helicase TIP 99.7 1.6E-14 3.6E-19 133.7 20.7 114 226-356 292-417 (450)
142 PRK10865 protein disaggregatio 99.6 5.3E-14 1.1E-18 151.2 24.8 210 132-356 567-833 (857)
143 PRK09112 DNA polymerase III su 99.6 3.5E-14 7.5E-19 137.4 20.7 195 126-350 16-247 (351)
144 KOG1969 DNA replication checkp 99.6 1.7E-14 3.8E-19 144.4 18.6 211 122-356 260-520 (877)
145 PRK13407 bchI magnesium chelat 99.6 1.3E-14 2.9E-19 138.7 16.4 163 127-313 2-216 (334)
146 cd02684 MIT_2 MIT: domain cont 99.6 4.3E-15 9.4E-20 109.7 10.0 72 5-76 2-73 (75)
147 PRK09087 hypothetical protein; 99.6 3E-14 6.5E-19 129.9 17.7 177 127-347 15-199 (226)
148 COG1474 CDC6 Cdc6-related prot 99.6 7.9E-14 1.7E-18 135.4 21.1 204 133-356 17-250 (366)
149 PRK07471 DNA polymerase III su 99.6 1.8E-13 4E-18 133.0 23.2 187 127-345 13-240 (365)
150 PRK05564 DNA polymerase III su 99.6 8.2E-14 1.8E-18 134.1 19.1 172 131-337 2-185 (313)
151 TIGR02640 gas_vesic_GvpN gas v 99.6 1.6E-13 3.5E-18 128.4 20.0 132 167-313 22-198 (262)
152 CHL00081 chlI Mg-protoporyphyr 99.6 1.7E-13 3.7E-18 131.3 19.7 238 126-412 10-321 (350)
153 cd02683 MIT_1 MIT: domain cont 99.6 1.5E-14 3.3E-19 107.3 9.6 70 6-75 3-72 (77)
154 COG1219 ClpX ATP-dependent pro 99.6 5.6E-14 1.2E-18 128.4 14.2 220 135-356 63-372 (408)
155 cd02681 MIT_calpain7_1 MIT: do 99.6 4.7E-14 1E-18 103.7 10.3 70 5-74 2-72 (76)
156 COG2607 Predicted ATPase (AAA+ 99.5 6.9E-13 1.5E-17 116.9 18.3 194 125-346 52-276 (287)
157 PF04212 MIT: MIT (microtubule 99.5 7.7E-14 1.7E-18 102.3 10.2 69 5-73 1-69 (69)
158 cd02678 MIT_VPS4 MIT: domain c 99.5 8E-14 1.7E-18 103.7 10.1 71 5-75 2-72 (75)
159 cd02677 MIT_SNX15 MIT: domain 99.5 7.1E-14 1.5E-18 102.9 9.7 69 5-73 2-70 (75)
160 cd02682 MIT_AAA_Arch MIT: doma 99.5 8.3E-14 1.8E-18 101.3 9.8 69 5-73 2-70 (75)
161 TIGR02030 BchI-ChlI magnesium 99.5 5.3E-13 1.2E-17 128.0 18.1 159 131-313 2-219 (337)
162 COG1220 HslU ATP-dependent pro 99.5 2E-13 4.3E-18 125.7 14.2 199 135-333 17-382 (444)
163 PRK07399 DNA polymerase III su 99.5 6.8E-13 1.5E-17 126.7 17.8 183 131-345 2-223 (314)
164 KOG2035 Replication factor C, 99.5 6.2E-13 1.3E-17 119.4 16.1 181 122-334 2-220 (351)
165 TIGR01650 PD_CobS cobaltochela 99.5 2.2E-13 4.8E-18 128.5 13.5 135 167-314 65-234 (327)
166 TIGR02442 Cob-chelat-sub cobal 99.5 4E-13 8.6E-18 140.4 16.8 160 131-314 2-215 (633)
167 PF06068 TIP49: TIP49 C-termin 99.5 2.7E-13 5.8E-18 127.8 13.8 102 226-344 279-392 (398)
168 PRK04132 replication factor C 99.5 9.7E-13 2.1E-17 138.6 19.5 148 165-334 563-723 (846)
169 smart00350 MCM minichromosome 99.5 1.3E-13 2.8E-18 140.8 12.6 255 134-415 204-506 (509)
170 cd00009 AAA The AAA+ (ATPases 99.5 6.2E-13 1.3E-17 112.7 15.0 138 137-298 2-150 (151)
171 KOG0745 Putative ATP-dependent 99.5 2.1E-12 4.6E-17 122.6 18.4 190 167-356 227-513 (564)
172 TIGR00678 holB DNA polymerase 99.5 8E-13 1.7E-17 117.7 14.8 144 164-334 12-183 (188)
173 COG0470 HolB ATPase involved i 99.5 4.5E-13 9.7E-18 129.9 13.7 150 133-310 1-178 (325)
174 PF09336 Vps4_C: Vps4 C termin 99.5 8.2E-15 1.8E-19 103.6 0.7 62 368-433 1-62 (62)
175 COG0542 clpA ATP-binding subun 99.5 1.7E-12 3.7E-17 134.1 16.9 212 116-349 153-391 (786)
176 PRK13531 regulatory ATPase Rav 99.5 1.1E-11 2.4E-16 122.3 21.4 235 135-412 22-282 (498)
177 PRK08058 DNA polymerase III su 99.4 3.4E-12 7.3E-17 123.3 17.5 173 131-343 3-204 (329)
178 PRK05707 DNA polymerase III su 99.4 3.6E-12 7.9E-17 122.3 16.7 151 164-337 20-198 (328)
179 cd02656 MIT MIT: domain contai 99.4 1.3E-12 2.8E-17 97.6 10.6 71 5-75 2-72 (75)
180 PHA02244 ATPase-like protein 99.4 6.7E-12 1.4E-16 119.7 17.1 127 167-309 120-269 (383)
181 TIGR03015 pepcterm_ATPase puta 99.4 2.9E-11 6.4E-16 113.9 20.9 192 167-414 44-267 (269)
182 PF01078 Mg_chelatase: Magnesi 99.4 1.9E-13 4.2E-18 120.2 5.2 143 132-303 2-205 (206)
183 smart00745 MIT Microtubule Int 99.4 2.6E-12 5.7E-17 96.5 10.3 72 4-75 3-74 (77)
184 TIGR00602 rad24 checkpoint pro 99.4 6.9E-12 1.5E-16 129.1 16.5 208 121-352 72-329 (637)
185 COG0714 MoxR-like ATPases [Gen 99.4 1.8E-11 3.9E-16 118.7 18.4 149 135-313 26-203 (329)
186 TIGR00764 lon_rel lon-related 99.4 1.4E-11 3.1E-16 127.6 18.6 54 126-193 11-64 (608)
187 cd02680 MIT_calpain7_2 MIT: do 99.4 2.6E-12 5.7E-17 93.7 9.2 66 6-75 3-72 (75)
188 KOG1942 DNA helicase, TBP-inte 99.4 2.5E-11 5.4E-16 109.9 17.1 109 225-350 296-417 (456)
189 PF07724 AAA_2: AAA domain (Cd 99.4 3.4E-12 7.4E-17 111.1 11.3 114 165-281 2-131 (171)
190 PF05621 TniB: Bacterial TniB 99.4 2.4E-11 5.1E-16 112.7 16.7 223 134-376 35-294 (302)
191 KOG0990 Replication factor C, 99.4 6E-12 1.3E-16 115.5 12.5 193 121-348 29-234 (360)
192 TIGR00368 Mg chelatase-related 99.4 1.5E-11 3.2E-16 124.1 15.7 145 130-303 189-394 (499)
193 PTZ00111 DNA replication licen 99.4 8.5E-12 1.8E-16 130.9 14.2 260 134-414 451-805 (915)
194 PF13177 DNA_pol3_delta2: DNA 99.3 1.9E-11 4.1E-16 105.7 13.1 134 137-300 1-161 (162)
195 PRK11331 5-methylcytosine-spec 99.3 2E-11 4.3E-16 119.6 14.7 146 132-303 174-362 (459)
196 TIGR02974 phageshock_pspF psp 99.3 5.4E-11 1.2E-15 114.7 17.1 191 135-351 1-233 (329)
197 PRK06871 DNA polymerase III su 99.3 8.9E-11 1.9E-15 112.0 18.1 148 164-336 22-197 (325)
198 PF07728 AAA_5: AAA domain (dy 99.3 6.5E-12 1.4E-16 106.1 8.5 110 168-291 1-139 (139)
199 PRK08769 DNA polymerase III su 99.3 9.2E-11 2E-15 111.7 17.1 168 139-339 10-205 (319)
200 TIGR02031 BchD-ChlD magnesium 99.3 7.9E-11 1.7E-15 121.9 17.9 211 167-413 17-258 (589)
201 PRK07993 DNA polymerase III su 99.3 1E-10 2.2E-15 112.7 17.5 153 164-337 22-199 (334)
202 TIGR01817 nifA Nif-specific re 99.3 6.2E-11 1.3E-15 122.4 17.0 196 128-351 191-428 (534)
203 PRK11608 pspF phage shock prot 99.3 8.1E-11 1.8E-15 113.6 15.8 195 131-351 4-240 (326)
204 PRK05022 anaerobic nitric oxid 99.3 1.3E-10 2.8E-15 119.1 17.7 197 131-353 185-422 (509)
205 smart00382 AAA ATPases associa 99.3 4.6E-11 1E-15 100.2 12.1 123 167-300 3-147 (148)
206 COG3829 RocR Transcriptional r 99.3 3.7E-11 8E-16 118.2 12.3 201 126-349 238-477 (560)
207 KOG0482 DNA replication licens 99.3 3.9E-11 8.5E-16 115.9 11.9 260 134-415 343-640 (721)
208 PRK15424 propionate catabolism 99.3 1.1E-10 2.5E-15 118.5 16.0 195 130-350 216-464 (538)
209 PRK15429 formate hydrogenlyase 99.3 2.2E-10 4.8E-15 121.7 18.8 196 129-351 372-609 (686)
210 PRK06964 DNA polymerase III su 99.2 7.4E-11 1.6E-15 113.3 12.7 133 164-312 19-203 (342)
211 TIGR02329 propionate_PrpR prop 99.2 1.7E-10 3.8E-15 117.3 15.9 195 130-350 209-449 (526)
212 PRK10820 DNA-binding transcrip 99.2 1.5E-10 3.3E-15 118.6 15.4 199 127-351 198-437 (520)
213 KOG2680 DNA helicase TIP49, TB 99.2 9.2E-10 2E-14 100.2 18.5 114 226-356 289-414 (454)
214 COG1239 ChlI Mg-chelatase subu 99.2 4.8E-10 1E-14 107.5 17.5 163 129-315 13-234 (423)
215 PRK11388 DNA-binding transcrip 99.2 1.6E-10 3.4E-15 122.0 15.7 195 128-351 320-554 (638)
216 PRK08116 hypothetical protein; 99.2 7.6E-11 1.7E-15 110.3 11.8 123 166-302 114-251 (268)
217 COG1241 MCM2 Predicted ATPase 99.2 3.2E-11 6.9E-16 123.8 9.8 255 133-414 286-593 (682)
218 COG2204 AtoC Response regulato 99.2 2.5E-10 5.4E-15 112.4 15.4 199 130-354 138-377 (464)
219 PRK06090 DNA polymerase III su 99.2 3.3E-10 7.1E-15 107.8 15.3 129 164-311 23-178 (319)
220 smart00763 AAA_PrkA PrkA AAA d 99.2 5.1E-10 1.1E-14 107.0 16.4 63 131-199 48-118 (361)
221 COG1221 PspF Transcriptional r 99.2 1.9E-10 4.2E-15 111.2 13.7 201 129-356 74-314 (403)
222 COG0606 Predicted ATPase with 99.2 3.6E-11 7.7E-16 116.8 8.2 148 130-304 176-383 (490)
223 KOG0741 AAA+-type ATPase [Post 99.2 4.6E-10 1E-14 109.3 15.4 163 163-332 535-700 (744)
224 KOG1514 Origin recognition com 99.2 1.6E-09 3.5E-14 109.1 19.2 202 166-416 422-658 (767)
225 PRK09862 putative ATP-dependen 99.2 5.3E-10 1.2E-14 112.4 15.6 235 130-413 188-492 (506)
226 PF07726 AAA_3: ATPase family 99.2 2.4E-11 5.3E-16 98.1 4.9 106 168-292 1-130 (131)
227 PF03215 Rad17: Rad17 cell cyc 99.2 1.3E-09 2.7E-14 110.5 17.2 209 121-352 7-269 (519)
228 KOG0478 DNA replication licens 99.1 5.3E-10 1.2E-14 111.9 13.2 262 134-413 430-724 (804)
229 PRK12377 putative replication 99.1 6.5E-10 1.4E-14 102.3 12.4 145 123-291 64-222 (248)
230 COG3604 FhlA Transcriptional r 99.1 9.7E-10 2.1E-14 106.9 13.6 199 128-351 218-456 (550)
231 PF00158 Sigma54_activat: Sigm 99.1 1.5E-09 3.2E-14 94.2 13.1 121 135-280 1-144 (168)
232 PF00493 MCM: MCM2/3/5 family 99.1 5.7E-11 1.2E-15 114.7 4.6 247 134-413 25-326 (331)
233 PRK13765 ATP-dependent proteas 99.1 8.4E-09 1.8E-13 106.8 19.7 54 125-192 23-76 (637)
234 PRK07952 DNA replication prote 99.1 1.8E-09 3.8E-14 99.2 12.7 148 123-291 62-221 (244)
235 PRK08699 DNA polymerase III su 99.1 1.7E-09 3.8E-14 103.8 12.5 132 164-311 19-183 (325)
236 KOG0480 DNA replication licens 99.0 2.4E-09 5.2E-14 106.5 13.2 272 132-417 344-647 (764)
237 KOG1051 Chaperone HSP104 and r 99.0 1.2E-08 2.6E-13 107.4 18.3 128 135-280 564-711 (898)
238 TIGR02915 PEP_resp_reg putativ 99.0 6.6E-09 1.4E-13 105.3 15.6 192 131-351 137-372 (445)
239 KOG2227 Pre-initiation complex 99.0 1E-08 2.2E-13 99.1 15.3 202 133-355 150-383 (529)
240 PRK10923 glnG nitrogen regulat 99.0 5.9E-09 1.3E-13 106.4 14.7 192 131-351 136-371 (469)
241 PF01637 Arch_ATPase: Archaeal 99.0 2.6E-09 5.7E-14 98.0 11.0 184 135-340 1-231 (234)
242 PRK05917 DNA polymerase III su 99.0 6.9E-09 1.5E-13 97.0 13.5 137 164-334 17-173 (290)
243 PRK08181 transposase; Validate 99.0 3.6E-09 7.9E-14 98.6 11.6 124 167-305 107-247 (269)
244 PRK13406 bchD magnesium chelat 99.0 1.8E-08 3.8E-13 103.7 16.5 145 138-305 8-174 (584)
245 PRK06835 DNA replication prote 98.9 9.5E-09 2.1E-13 98.6 12.1 111 167-291 184-305 (329)
246 PRK11361 acetoacetate metaboli 98.9 3.4E-08 7.3E-13 100.5 16.2 166 167-351 167-376 (457)
247 KOG1970 Checkpoint RAD17-RFC c 98.9 8.1E-08 1.8E-12 94.6 17.8 214 119-351 68-320 (634)
248 PF13173 AAA_14: AAA domain 98.9 8.7E-09 1.9E-13 85.6 8.0 118 167-304 3-126 (128)
249 PRK07276 DNA polymerase III su 98.8 1.6E-07 3.5E-12 88.1 16.9 170 138-345 7-199 (290)
250 TIGR01818 ntrC nitrogen regula 98.8 8.9E-08 1.9E-12 97.6 16.2 193 132-352 133-368 (463)
251 PRK15115 response regulator Gl 98.8 1E-07 2.2E-12 96.5 16.5 165 167-350 158-366 (444)
252 PF01695 IstB_IS21: IstB-like 98.8 3.6E-09 7.9E-14 92.8 4.8 70 166-237 47-120 (178)
253 PRK05818 DNA polymerase III su 98.8 1.2E-07 2.6E-12 86.8 14.8 121 164-300 5-147 (261)
254 PRK08939 primosomal protein Dn 98.8 2.6E-08 5.7E-13 94.9 10.2 71 165-237 155-229 (306)
255 KOG0481 DNA replication licens 98.8 1.3E-07 2.8E-12 92.1 14.1 266 134-415 332-641 (729)
256 COG1484 DnaC DNA replication p 98.8 5.4E-08 1.2E-12 90.3 11.2 71 165-237 104-179 (254)
257 PF14532 Sigma54_activ_2: Sigm 98.8 2.8E-08 6E-13 83.7 8.2 104 167-298 22-136 (138)
258 PRK06526 transposase; Provisio 98.7 2.1E-08 4.6E-13 92.9 7.4 71 166-238 98-172 (254)
259 PRK06921 hypothetical protein; 98.7 8.3E-08 1.8E-12 89.8 11.1 68 166-236 117-188 (266)
260 PRK07132 DNA polymerase III su 98.7 6.1E-07 1.3E-11 85.0 16.7 143 165-334 17-177 (299)
261 PF12774 AAA_6: Hydrolytic ATP 98.7 1.7E-07 3.6E-12 85.5 11.5 128 167-310 33-177 (231)
262 KOG1968 Replication factor C, 98.7 7.7E-08 1.7E-12 102.2 10.4 212 121-350 308-535 (871)
263 PRK10365 transcriptional regul 98.7 4.2E-07 9.2E-12 92.0 15.3 165 167-350 163-371 (441)
264 PRK09183 transposase/IS protei 98.7 5.4E-08 1.2E-12 90.7 7.9 71 166-237 102-176 (259)
265 PF13401 AAA_22: AAA domain; P 98.6 1.5E-07 3.2E-12 78.3 9.1 72 167-238 5-100 (131)
266 PF12775 AAA_7: P-loop contain 98.6 1.2E-07 2.5E-12 89.0 7.8 135 167-314 34-194 (272)
267 COG3283 TyrR Transcriptional r 98.5 2.7E-06 5.9E-11 79.8 14.8 197 127-350 198-431 (511)
268 PF03969 AFG1_ATPase: AFG1-lik 98.5 5E-07 1.1E-11 87.9 10.3 103 163-280 59-168 (362)
269 PF05729 NACHT: NACHT domain 98.5 1.6E-06 3.5E-11 74.9 12.5 140 168-315 2-165 (166)
270 PLN03210 Resistant to P. syrin 98.5 1.3E-05 2.8E-10 90.4 22.0 177 128-336 179-389 (1153)
271 KOG0477 DNA replication licens 98.5 3.3E-07 7.1E-12 91.3 7.8 163 134-315 450-652 (854)
272 COG3267 ExeA Type II secretory 98.4 1.6E-05 3.5E-10 71.8 16.8 179 167-356 52-258 (269)
273 KOG2170 ATPase of the AAA+ sup 98.4 4.2E-06 9.1E-11 76.9 13.3 100 134-238 83-191 (344)
274 KOG2228 Origin recognition com 98.4 1.8E-06 3.9E-11 80.5 10.1 162 134-314 25-220 (408)
275 COG5271 MDN1 AAA ATPase contai 98.4 8.2E-07 1.8E-11 96.5 8.7 135 166-315 1543-1705(4600)
276 cd01120 RecA-like_NTPases RecA 98.4 2.1E-06 4.4E-11 73.9 9.9 71 169-239 2-99 (165)
277 COG1618 Predicted nucleotide k 98.4 8.7E-06 1.9E-10 68.2 12.5 24 167-190 6-29 (179)
278 PF00910 RNA_helicase: RNA hel 98.4 1.6E-06 3.4E-11 69.5 7.4 23 169-191 1-23 (107)
279 PHA00729 NTP-binding motif con 98.3 1.8E-06 3.9E-11 77.7 8.5 25 167-191 18-42 (226)
280 PF00931 NB-ARC: NB-ARC domain 98.3 6.8E-06 1.5E-10 78.1 12.0 159 164-343 17-202 (287)
281 KOG4509 Uncharacterized conser 98.3 2.4E-06 5.2E-11 71.6 7.3 73 5-77 11-84 (247)
282 COG1485 Predicted ATPase [Gene 98.3 6.3E-06 1.4E-10 77.8 10.9 106 158-280 57-171 (367)
283 PF14516 AAA_35: AAA-like doma 98.3 0.00016 3.4E-09 70.2 20.7 172 164-347 29-243 (331)
284 TIGR02237 recomb_radB DNA repa 98.2 7.2E-06 1.6E-10 74.1 10.1 82 158-239 4-111 (209)
285 PHA02624 large T antigen; Prov 98.2 5E-06 1.1E-10 84.2 9.4 124 162-299 427-561 (647)
286 KOG1051 Chaperone HSP104 and r 98.2 1.6E-05 3.5E-10 84.3 12.8 160 132-314 185-364 (898)
287 TIGR01618 phage_P_loop phage n 98.2 2.8E-06 6E-11 76.6 6.2 110 166-277 12-142 (220)
288 PRK06581 DNA polymerase III su 98.2 5.8E-05 1.3E-09 68.0 13.8 147 165-332 14-177 (263)
289 COG5271 MDN1 AAA ATPase contai 98.2 7.9E-06 1.7E-10 89.3 9.6 133 167-314 889-1048(4600)
290 PRK11823 DNA repair protein Ra 98.2 1.8E-05 3.8E-10 79.7 11.8 103 160-262 74-195 (446)
291 COG3284 AcoR Transcriptional a 98.1 1.1E-05 2.5E-10 81.4 10.0 172 167-351 337-540 (606)
292 cd01121 Sms Sms (bacterial rad 98.1 2.3E-05 5E-10 76.7 11.7 102 161-262 77-197 (372)
293 cd01124 KaiC KaiC is a circadi 98.1 2.6E-05 5.7E-10 69.0 10.9 71 169-239 2-109 (187)
294 PRK04841 transcriptional regul 98.1 0.00016 3.5E-09 80.0 18.7 153 167-337 33-220 (903)
295 TIGR02688 conserved hypothetic 98.1 9.3E-05 2E-09 72.4 14.3 81 165-262 208-289 (449)
296 PRK12723 flagellar biosynthesi 98.1 0.00012 2.6E-09 71.9 15.2 161 166-339 174-374 (388)
297 COG4650 RtcR Sigma54-dependent 98.1 3.2E-05 6.9E-10 70.9 10.2 72 167-238 209-295 (531)
298 PRK08533 flagellar accessory p 98.0 5E-05 1.1E-09 69.6 10.6 78 161-238 19-130 (230)
299 PRK04296 thymidine kinase; Pro 98.0 7E-05 1.5E-09 66.6 11.1 69 168-237 4-90 (190)
300 PF13207 AAA_17: AAA domain; P 98.0 6.2E-06 1.3E-10 67.5 3.9 31 169-199 2-32 (121)
301 KOG0479 DNA replication licens 98.0 1.9E-05 4.1E-10 78.5 7.8 166 134-311 302-496 (818)
302 COG1373 Predicted ATPase (AAA+ 98.0 0.00097 2.1E-08 66.2 19.8 121 168-307 39-161 (398)
303 PHA02774 E1; Provisional 98.0 4.3E-05 9.3E-10 77.3 10.2 107 166-299 434-554 (613)
304 PRK08118 topology modulation p 98.0 1.7E-05 3.7E-10 68.9 6.5 33 167-199 2-34 (167)
305 PRK14722 flhF flagellar biosyn 98.0 5.9E-05 1.3E-09 73.4 10.9 110 165-287 136-266 (374)
306 PRK09361 radB DNA repair and r 98.0 5.8E-05 1.3E-09 69.0 10.2 41 160-200 17-60 (225)
307 PF06309 Torsin: Torsin; Inte 98.0 5.6E-05 1.2E-09 61.3 8.8 52 134-190 26-77 (127)
308 KOG2543 Origin recognition com 97.9 0.00053 1.1E-08 65.4 16.4 157 134-313 7-193 (438)
309 PRK06067 flagellar accessory p 97.9 8E-05 1.7E-09 68.6 10.4 78 161-238 20-133 (234)
310 TIGR02012 tigrfam_recA protein 97.9 7.8E-05 1.7E-09 71.2 10.5 79 162-240 51-148 (321)
311 PRK07261 topology modulation p 97.9 2.7E-05 6E-10 67.9 6.7 34 168-201 2-35 (171)
312 PF03266 NTPase_1: NTPase; In 97.9 2.3E-05 5E-10 68.0 5.9 23 168-190 1-23 (168)
313 PRK10536 hypothetical protein; 97.9 0.00015 3.3E-09 66.5 11.4 44 132-189 54-97 (262)
314 TIGR03877 thermo_KaiC_1 KaiC d 97.9 0.00016 3.5E-09 66.6 11.9 41 159-199 14-57 (237)
315 PF05707 Zot: Zonular occluden 97.9 2.6E-05 5.6E-10 69.6 6.4 122 169-299 3-145 (193)
316 PF10443 RNA12: RNA12 protein; 97.9 0.00059 1.3E-08 66.7 16.0 78 228-315 151-231 (431)
317 PRK15455 PrkA family serine pr 97.9 1.6E-05 3.4E-10 80.3 5.3 61 131-197 74-135 (644)
318 cd00983 recA RecA is a bacter 97.9 0.00012 2.5E-09 70.0 10.7 79 162-240 51-148 (325)
319 PRK13949 shikimate kinase; Pro 97.8 0.00016 3.6E-09 62.9 10.3 32 167-198 2-33 (169)
320 cd02679 MIT_spastin MIT: domai 97.8 0.00013 2.9E-09 54.1 8.0 64 4-67 3-73 (79)
321 COG3854 SpoIIIAA ncharacterize 97.8 0.00011 2.3E-09 65.3 8.7 74 164-237 135-230 (308)
322 PF07693 KAP_NTPase: KAP famil 97.8 0.0039 8.4E-08 60.3 20.5 30 164-193 18-47 (325)
323 PRK00131 aroK shikimate kinase 97.8 2.3E-05 5.1E-10 68.4 4.4 34 165-198 3-36 (175)
324 PF06745 KaiC: KaiC; InterPro 97.8 0.00025 5.5E-09 64.9 11.3 100 159-262 12-148 (226)
325 PF13671 AAA_33: AAA domain; P 97.8 8.1E-05 1.8E-09 62.7 7.4 32 169-202 2-33 (143)
326 PF04665 Pox_A32: Poxvirus A32 97.8 0.00037 8.1E-09 63.6 11.8 130 166-312 13-169 (241)
327 TIGR00416 sms DNA repair prote 97.8 0.00028 6E-09 71.2 12.1 79 161-239 89-184 (454)
328 PF13191 AAA_16: AAA ATPase do 97.7 4.6E-05 9.9E-10 67.2 5.6 59 135-202 2-63 (185)
329 PF13604 AAA_30: AAA domain; P 97.7 0.00056 1.2E-08 61.1 12.4 34 167-200 19-55 (196)
330 COG5245 DYN1 Dynein, heavy cha 97.7 0.00013 2.8E-09 79.7 9.2 145 164-315 1492-1660(3164)
331 KOG2383 Predicted ATPase [Gene 97.7 0.00043 9.4E-09 66.4 11.6 29 163-191 111-139 (467)
332 cd01129 PulE-GspE PulE/GspE Th 97.7 0.00012 2.7E-09 68.4 7.8 95 129-236 56-160 (264)
333 KOG3347 Predicted nucleotide k 97.7 3.6E-05 7.9E-10 63.5 3.4 32 167-198 8-39 (176)
334 PRK14974 cell division protein 97.6 0.00058 1.3E-08 65.9 11.8 35 166-200 140-177 (336)
335 cd03283 ABC_MutS-like MutS-lik 97.6 0.00042 9.1E-09 62.0 10.2 103 167-282 26-150 (199)
336 cd01131 PilT Pilus retraction 97.6 8.6E-05 1.9E-09 66.5 5.7 68 168-235 3-84 (198)
337 PTZ00202 tuzin; Provisional 97.6 0.0038 8.1E-08 61.5 17.1 61 131-200 260-320 (550)
338 PRK09354 recA recombinase A; P 97.6 0.00045 9.6E-09 66.6 10.8 78 162-239 56-152 (349)
339 PRK04328 hypothetical protein; 97.6 0.00075 1.6E-08 62.7 12.1 41 159-199 16-59 (249)
340 PRK13695 putative NTPase; Prov 97.6 0.0013 2.8E-08 57.6 12.9 23 168-190 2-24 (174)
341 cd01394 radB RadB. The archaea 97.6 0.00045 9.7E-09 62.8 10.4 40 161-200 14-56 (218)
342 CHL00195 ycf46 Ycf46; Provisio 97.6 0.0075 1.6E-07 61.3 19.9 109 226-348 82-190 (489)
343 PRK13947 shikimate kinase; Pro 97.6 5.7E-05 1.2E-09 65.9 4.1 32 167-198 2-33 (171)
344 PRK05973 replicative DNA helic 97.6 0.00075 1.6E-08 61.7 11.4 40 161-200 59-101 (237)
345 cd00046 DEXDc DEAD-like helica 97.6 0.00048 1E-08 57.0 9.5 23 168-190 2-24 (144)
346 TIGR02858 spore_III_AA stage I 97.6 0.00017 3.7E-09 67.4 7.3 69 167-235 112-204 (270)
347 cd01393 recA_like RecA is a b 97.6 0.00048 1E-08 62.9 10.2 41 161-201 14-63 (226)
348 PRK06762 hypothetical protein; 97.6 0.00021 4.6E-09 62.0 7.4 37 167-203 3-39 (166)
349 PRK00625 shikimate kinase; Pro 97.6 6E-05 1.3E-09 65.7 3.9 31 168-198 2-32 (173)
350 PRK03839 putative kinase; Prov 97.6 5.7E-05 1.2E-09 66.5 3.8 31 168-198 2-32 (180)
351 COG2909 MalT ATP-dependent tra 97.6 0.0015 3.2E-08 68.5 14.4 155 166-337 37-228 (894)
352 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00041 8.8E-09 63.8 9.6 80 160-239 13-129 (235)
353 TIGR03878 thermo_KaiC_2 KaiC d 97.6 0.00082 1.8E-08 62.8 11.4 40 161-200 31-73 (259)
354 COG4088 Predicted nucleotide k 97.6 0.0005 1.1E-08 60.2 9.0 24 168-191 3-26 (261)
355 COG4619 ABC-type uncharacteriz 97.6 0.00095 2.1E-08 56.6 10.3 28 163-190 26-53 (223)
356 cd00544 CobU Adenosylcobinamid 97.6 0.00051 1.1E-08 59.7 9.2 71 169-241 2-89 (169)
357 cd00464 SK Shikimate kinase (S 97.6 7.4E-05 1.6E-09 63.8 4.0 31 168-198 1-31 (154)
358 PRK05800 cobU adenosylcobinami 97.5 0.00075 1.6E-08 58.7 10.2 34 168-201 3-36 (170)
359 PF00437 T2SE: Type II/IV secr 97.5 0.00011 2.5E-09 69.1 5.5 100 127-236 98-208 (270)
360 PF00448 SRP54: SRP54-type pro 97.5 0.00053 1.2E-08 61.1 9.4 71 166-236 1-94 (196)
361 PRK11889 flhF flagellar biosyn 97.5 0.0016 3.5E-08 63.4 13.1 59 139-200 217-278 (436)
362 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00059 1.3E-08 61.8 9.7 22 167-188 30-51 (213)
363 PRK09376 rho transcription ter 97.5 0.0002 4.4E-09 69.5 6.6 25 167-191 170-194 (416)
364 PRK10867 signal recognition pa 97.5 0.0082 1.8E-07 60.0 18.1 74 164-237 98-195 (433)
365 COG2804 PulE Type II secretory 97.5 0.00028 6.2E-09 70.1 7.7 97 127-236 232-338 (500)
366 PRK14532 adenylate kinase; Pro 97.5 9.1E-05 2E-09 65.7 3.8 34 168-203 2-35 (188)
367 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 0.0001 2.2E-09 65.0 3.9 33 169-203 2-34 (183)
368 PRK00771 signal recognition pa 97.5 0.0013 2.9E-08 65.6 12.1 71 165-237 94-187 (437)
369 cd00984 DnaB_C DnaB helicase C 97.5 0.0016 3.4E-08 60.2 11.9 38 162-199 9-50 (242)
370 PRK13900 type IV secretion sys 97.5 0.0003 6.5E-09 67.9 7.2 70 166-235 160-245 (332)
371 PRK14700 recombination factor 97.5 0.001 2.3E-08 62.1 10.4 77 268-349 6-90 (300)
372 COG1066 Sms Predicted ATP-depe 97.5 0.0012 2.7E-08 63.7 11.1 104 159-262 86-207 (456)
373 TIGR01420 pilT_fam pilus retra 97.5 0.00053 1.1E-08 66.9 8.9 69 167-235 123-205 (343)
374 PF12780 AAA_8: P-loop contain 97.5 0.0054 1.2E-07 57.4 15.2 90 134-235 9-99 (268)
375 cd01128 rho_factor Transcripti 97.5 0.00036 7.7E-09 64.5 7.3 27 166-192 16-42 (249)
376 smart00487 DEXDc DEAD-like hel 97.4 0.0012 2.7E-08 58.1 10.6 33 167-199 25-62 (201)
377 TIGR03880 KaiC_arch_3 KaiC dom 97.4 0.0017 3.8E-08 59.2 11.8 42 159-200 9-53 (224)
378 cd00227 CPT Chloramphenicol (C 97.4 0.00011 2.3E-09 64.5 3.6 36 167-202 3-38 (175)
379 PRK06217 hypothetical protein; 97.4 0.00013 2.8E-09 64.5 4.0 31 168-198 3-33 (183)
380 COG0703 AroK Shikimate kinase 97.4 0.00011 2.5E-09 63.0 3.5 33 167-199 3-35 (172)
381 TIGR02525 plasmid_TraJ plasmid 97.4 0.0005 1.1E-08 67.2 8.3 70 167-236 150-236 (372)
382 PRK13948 shikimate kinase; Pro 97.4 0.00017 3.6E-09 63.4 4.5 35 164-198 8-42 (182)
383 PRK14531 adenylate kinase; Pro 97.4 0.00014 3E-09 64.3 4.0 31 167-197 3-33 (183)
384 PF10236 DAP3: Mitochondrial r 97.4 0.011 2.3E-07 56.8 17.2 116 225-341 156-307 (309)
385 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.0016 3.6E-08 58.3 11.0 21 167-187 29-49 (200)
386 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.0036 7.8E-08 53.5 12.4 115 168-297 4-152 (159)
387 TIGR02788 VirB11 P-type DNA tr 97.4 0.00067 1.5E-08 65.1 8.9 72 164-235 142-228 (308)
388 COG0563 Adk Adenylate kinase a 97.4 0.00016 3.6E-09 63.3 4.3 32 168-201 2-33 (178)
389 TIGR02655 circ_KaiC circadian 97.4 0.0012 2.7E-08 67.4 11.3 82 158-239 255-367 (484)
390 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0025 5.4E-08 58.4 12.3 40 160-199 14-56 (229)
391 PF13479 AAA_24: AAA domain 97.4 0.00082 1.8E-08 60.9 8.9 66 167-237 4-80 (213)
392 cd02027 APSK Adenosine 5'-phos 97.4 0.00064 1.4E-08 57.9 7.7 34 169-202 2-38 (149)
393 PRK12726 flagellar biosynthesi 97.4 0.027 5.9E-07 54.8 19.4 63 138-202 180-245 (407)
394 TIGR02782 TrbB_P P-type conjug 97.4 0.00041 8.9E-09 66.1 7.0 69 167-235 133-214 (299)
395 cd02021 GntK Gluconate kinase 97.4 0.00016 3.4E-09 61.6 3.8 28 169-196 2-29 (150)
396 PRK14530 adenylate kinase; Pro 97.4 0.00017 3.6E-09 65.6 4.1 31 167-197 4-34 (215)
397 cd01130 VirB11-like_ATPase Typ 97.4 0.00014 3E-09 64.4 3.5 70 166-235 25-110 (186)
398 cd03216 ABC_Carb_Monos_I This 97.4 0.0013 2.9E-08 56.8 9.6 74 163-236 23-111 (163)
399 COG1102 Cmk Cytidylate kinase 97.4 0.00015 3.3E-09 60.9 3.4 28 169-196 3-30 (179)
400 cd03243 ABC_MutS_homologs The 97.4 0.0016 3.5E-08 58.5 10.4 22 167-188 30-51 (202)
401 cd02020 CMPK Cytidine monophos 97.4 0.00016 3.6E-09 61.0 3.7 30 169-198 2-31 (147)
402 COG2874 FlaH Predicted ATPases 97.4 0.002 4.4E-08 56.9 10.4 119 162-291 24-178 (235)
403 cd01122 GP4d_helicase GP4d_hel 97.4 0.0012 2.5E-08 62.2 9.8 38 162-199 26-67 (271)
404 TIGR03574 selen_PSTK L-seryl-t 97.3 0.00055 1.2E-08 63.6 7.3 34 169-202 2-38 (249)
405 TIGR01313 therm_gnt_kin carboh 97.3 0.00017 3.8E-09 62.3 3.6 27 169-195 1-27 (163)
406 PF05272 VirE: Virulence-assoc 97.3 0.00062 1.3E-08 60.7 7.2 111 164-299 50-169 (198)
407 PRK08233 hypothetical protein; 97.3 0.0019 4.1E-08 56.7 10.3 33 167-199 4-37 (182)
408 cd01428 ADK Adenylate kinase ( 97.3 0.00018 4E-09 64.0 3.9 29 169-197 2-30 (194)
409 smart00534 MUTSac ATPase domai 97.3 0.0022 4.8E-08 56.7 10.6 20 169-188 2-21 (185)
410 TIGR03499 FlhF flagellar biosy 97.3 0.001 2.2E-08 63.0 8.9 37 165-201 193-234 (282)
411 PLN02840 tRNA dimethylallyltra 97.3 0.00065 1.4E-08 67.0 7.7 34 167-200 22-55 (421)
412 PRK05703 flhF flagellar biosyn 97.3 0.0022 4.8E-08 64.1 11.7 36 166-201 221-261 (424)
413 PRK06547 hypothetical protein; 97.3 0.00023 5E-09 62.0 4.1 35 164-198 13-47 (172)
414 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0016 3.6E-08 57.0 9.5 73 164-236 23-100 (177)
415 TIGR02533 type_II_gspE general 97.3 0.00081 1.8E-08 68.4 8.5 96 128-236 217-322 (486)
416 PF13245 AAA_19: Part of AAA d 97.3 0.00035 7.7E-09 51.9 4.4 33 168-200 12-51 (76)
417 TIGR00064 ftsY signal recognit 97.3 0.0017 3.8E-08 61.0 10.1 37 164-200 70-109 (272)
418 PRK13764 ATPase; Provisional 97.3 0.00046 1E-08 71.2 6.7 70 166-236 257-335 (602)
419 PRK05057 aroK shikimate kinase 97.3 0.00028 6.2E-09 61.6 4.5 33 167-199 5-37 (172)
420 PTZ00088 adenylate kinase 1; P 97.3 0.00024 5.3E-09 64.9 4.0 32 167-198 7-38 (229)
421 PLN02200 adenylate kinase fami 97.3 0.0003 6.4E-09 64.6 4.5 38 165-204 42-79 (234)
422 PRK10416 signal recognition pa 97.3 0.0076 1.7E-07 57.9 14.3 36 165-200 113-151 (318)
423 PRK12724 flagellar biosynthesi 97.3 0.0056 1.2E-07 60.4 13.5 36 166-201 223-262 (432)
424 COG1936 Predicted nucleotide k 97.3 0.0002 4.3E-09 61.0 3.0 30 168-198 2-31 (180)
425 PRK10436 hypothetical protein; 97.3 0.00089 1.9E-08 67.4 8.1 98 126-236 191-298 (462)
426 PRK03731 aroL shikimate kinase 97.3 0.00029 6.3E-09 61.4 4.1 32 167-198 3-34 (171)
427 PRK13946 shikimate kinase; Pro 97.2 0.00025 5.5E-09 62.7 3.7 33 167-199 11-43 (184)
428 PF09848 DUF2075: Uncharacteri 97.2 0.0013 2.8E-08 64.5 8.9 23 168-190 3-25 (352)
429 PRK14528 adenylate kinase; Pro 97.2 0.00029 6.2E-09 62.4 3.9 31 167-197 2-32 (186)
430 PRK09519 recA DNA recombinatio 97.2 0.0021 4.5E-08 68.2 10.8 78 162-239 56-152 (790)
431 cd03238 ABC_UvrA The excision 97.2 0.0044 9.5E-08 54.2 11.1 26 163-188 18-43 (176)
432 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00032 7E-09 62.0 3.9 30 167-196 4-33 (188)
433 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.2 0.0024 5.2E-08 54.0 9.1 71 164-236 24-99 (144)
434 PRK04301 radA DNA repair and r 97.2 0.0025 5.4E-08 61.5 10.2 41 161-201 97-146 (317)
435 cd03227 ABC_Class2 ABC-type Cl 97.2 0.0041 9E-08 53.7 10.6 23 167-189 22-44 (162)
436 PF13481 AAA_25: AAA domain; P 97.2 0.0019 4E-08 57.4 8.7 76 165-240 31-156 (193)
437 cd03214 ABC_Iron-Siderophores_ 97.2 0.0028 6E-08 55.8 9.6 27 164-190 23-49 (180)
438 PRK02496 adk adenylate kinase; 97.2 0.00032 7E-09 61.9 3.6 30 168-197 3-32 (184)
439 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.0026 5.7E-08 54.5 9.2 73 164-236 23-109 (157)
440 PRK04040 adenylate kinase; Pro 97.2 0.00038 8.3E-09 61.6 4.0 28 167-194 3-32 (188)
441 PRK06696 uridine kinase; Valid 97.2 0.00082 1.8E-08 61.4 6.4 38 166-203 22-62 (223)
442 TIGR01448 recD_rel helicase, p 97.2 0.0018 3.9E-08 69.3 9.8 99 167-281 339-456 (720)
443 PF06414 Zeta_toxin: Zeta toxi 97.2 0.0014 3E-08 58.7 7.7 42 164-205 13-55 (199)
444 PRK13851 type IV secretion sys 97.2 0.00031 6.6E-09 68.0 3.6 72 164-235 160-246 (344)
445 TIGR02238 recomb_DMC1 meiotic 97.2 0.0028 6E-08 60.8 10.0 42 160-201 90-140 (313)
446 TIGR01351 adk adenylate kinase 97.2 0.00035 7.6E-09 63.2 3.7 29 169-197 2-30 (210)
447 PRK08485 DNA polymerase III su 97.2 0.0041 8.9E-08 54.6 10.0 91 228-334 57-159 (206)
448 cd02019 NK Nucleoside/nucleoti 97.2 0.00066 1.4E-08 49.5 4.4 22 169-190 2-23 (69)
449 PLN03187 meiotic recombination 97.1 0.0038 8.1E-08 60.5 10.8 42 160-201 120-170 (344)
450 cd03115 SRP The signal recogni 97.1 0.0018 4E-08 56.5 7.9 32 169-200 3-37 (173)
451 TIGR00767 rho transcription te 97.1 0.0015 3.3E-08 63.8 7.9 28 164-191 166-193 (415)
452 PRK13833 conjugal transfer pro 97.1 0.0014 3E-08 62.8 7.7 69 167-235 145-225 (323)
453 PF01583 APS_kinase: Adenylyls 97.1 0.0017 3.7E-08 55.2 7.3 39 167-205 3-44 (156)
454 PRK00279 adk adenylate kinase; 97.1 0.00042 9.2E-09 62.9 3.9 30 168-197 2-31 (215)
455 TIGR02236 recomb_radA DNA repa 97.1 0.0037 7.9E-08 60.2 10.4 41 161-201 90-139 (310)
456 TIGR02538 type_IV_pilB type IV 97.1 0.0013 2.9E-08 68.3 7.8 98 126-236 289-396 (564)
457 COG0529 CysC Adenylylsulfate k 97.1 0.0019 4.1E-08 55.2 7.2 41 164-204 21-64 (197)
458 TIGR02524 dot_icm_DotB Dot/Icm 97.1 0.0024 5.2E-08 62.4 9.0 69 167-235 135-222 (358)
459 PF13238 AAA_18: AAA domain; P 97.1 0.00039 8.4E-09 57.2 3.0 22 169-190 1-22 (129)
460 TIGR02655 circ_KaiC circadian 97.1 0.0055 1.2E-07 62.7 11.9 80 159-238 14-133 (484)
461 cd02022 DPCK Dephospho-coenzym 97.1 0.002 4.3E-08 56.6 7.6 28 169-197 2-29 (179)
462 PF00406 ADK: Adenylate kinase 97.1 0.00069 1.5E-08 57.7 4.5 33 171-205 1-33 (151)
463 PF08433 KTI12: Chromatin asso 97.1 0.0018 3.9E-08 60.7 7.6 68 169-237 4-82 (270)
464 PRK14527 adenylate kinase; Pro 97.1 0.00046 9.9E-09 61.4 3.5 32 166-197 6-37 (191)
465 PRK13894 conjugal transfer ATP 97.1 0.0015 3.3E-08 62.7 7.2 70 166-235 148-229 (319)
466 KOG3928 Mitochondrial ribosome 97.1 0.032 6.9E-07 54.1 15.8 53 290-344 402-457 (461)
467 PRK08154 anaerobic benzoate ca 97.0 0.00084 1.8E-08 64.4 5.3 36 163-198 130-165 (309)
468 PHA02530 pseT polynucleotide k 97.0 0.0017 3.7E-08 62.1 7.5 35 167-202 3-37 (300)
469 cd01125 repA Hexameric Replica 97.0 0.0081 1.8E-07 55.4 11.6 21 169-189 4-24 (239)
470 COG1116 TauB ABC-type nitrate/ 97.0 0.0021 4.6E-08 58.3 7.3 27 164-190 27-53 (248)
471 COG0324 MiaA tRNA delta(2)-iso 97.0 0.00067 1.5E-08 64.0 4.3 36 167-202 4-39 (308)
472 PF10923 DUF2791: P-loop Domai 97.0 0.042 9.2E-07 54.4 16.9 55 126-189 17-72 (416)
473 PRK13808 adenylate kinase; Pro 97.0 0.0032 6.9E-08 60.4 8.9 30 168-197 2-31 (333)
474 PF13086 AAA_11: AAA domain; P 97.0 0.00075 1.6E-08 61.6 4.5 23 168-190 19-41 (236)
475 PRK09302 circadian clock prote 97.0 0.0059 1.3E-07 63.0 11.6 79 161-239 268-377 (509)
476 PF02562 PhoH: PhoH-like prote 97.0 0.0011 2.4E-08 59.1 5.3 24 167-190 20-43 (205)
477 PLN02674 adenylate kinase 97.0 0.00066 1.4E-08 62.4 4.0 36 166-203 31-66 (244)
478 TIGR01425 SRP54_euk signal rec 97.0 0.012 2.5E-07 58.6 12.8 74 164-237 98-194 (429)
479 COG1119 ModF ABC-type molybden 97.0 0.0027 5.8E-08 57.4 7.6 28 163-190 54-81 (257)
480 PRK09302 circadian clock prote 97.0 0.0069 1.5E-07 62.5 11.8 78 162-239 27-144 (509)
481 PRK12727 flagellar biosynthesi 97.0 0.012 2.5E-07 59.7 12.8 26 165-190 349-374 (559)
482 cd02024 NRK1 Nicotinamide ribo 97.0 0.0081 1.7E-07 53.0 10.4 29 169-197 2-31 (187)
483 PRK00889 adenylylsulfate kinas 97.0 0.0038 8.2E-08 54.6 8.4 37 166-202 4-43 (175)
484 TIGR00150 HI0065_YjeE ATPase, 97.0 0.00076 1.6E-08 55.8 3.6 30 164-193 20-49 (133)
485 PRK01184 hypothetical protein; 97.0 0.00071 1.5E-08 59.8 3.7 29 168-197 3-31 (184)
486 TIGR02768 TraA_Ti Ti-type conj 97.0 0.0027 5.9E-08 68.1 8.8 71 167-237 369-451 (744)
487 TIGR01613 primase_Cterm phage/ 97.0 0.0024 5.1E-08 61.3 7.5 87 137-236 53-139 (304)
488 COG4178 ABC-type uncharacteriz 97.0 0.0044 9.5E-08 63.6 9.7 27 163-189 416-442 (604)
489 cd03228 ABCC_MRP_Like The MRP 97.0 0.0074 1.6E-07 52.6 10.1 28 163-190 25-52 (171)
490 PF08303 tRNA_lig_kinase: tRNA 97.0 0.032 7E-07 47.5 13.3 61 172-236 5-65 (168)
491 PRK14526 adenylate kinase; Pro 97.0 0.00077 1.7E-08 60.8 3.9 29 168-196 2-30 (211)
492 PF05970 PIF1: PIF1-like helic 97.0 0.0034 7.5E-08 61.7 8.8 27 165-191 21-47 (364)
493 PF13521 AAA_28: AAA domain; P 96.9 0.00075 1.6E-08 58.3 3.6 27 169-196 2-28 (163)
494 TIGR01526 nadR_NMN_Atrans nico 96.9 0.0021 4.6E-08 62.0 7.0 36 167-202 163-198 (325)
495 PTZ00035 Rad51 protein; Provis 96.9 0.0069 1.5E-07 58.8 10.5 41 161-201 113-162 (337)
496 PRK05986 cob(I)alamin adenolsy 96.9 0.014 3E-07 51.3 11.4 116 167-297 23-172 (191)
497 COG1855 ATPase (PilT family) [ 96.9 0.00079 1.7E-08 65.5 3.8 45 130-191 244-288 (604)
498 PRK04182 cytidylate kinase; Pr 96.9 0.00085 1.8E-08 58.8 3.8 29 168-196 2-30 (180)
499 TIGR00174 miaA tRNA isopenteny 96.9 0.00087 1.9E-08 63.1 4.0 32 169-200 2-33 (287)
500 PRK13889 conjugal transfer rel 96.9 0.0051 1.1E-07 67.3 10.4 98 168-280 364-473 (988)
No 1
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-87 Score=597.39 Aligned_cols=429 Identities=65% Similarity=1.035 Sum_probs=400.4
Q ss_pred CC-hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 042771 1 MY-SNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEK-NPKIKEAITQKFTEYLRRAEEIRAVLDDGGP 78 (436)
Q Consensus 1 m~-~~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~-d~~~~~~~~~k~~~y~~rae~lk~~l~~~~~ 78 (436)
|+ ...++|||+|+++|+..|+.+||.+|+.+|++|++||+.++|+|. .+..|+.++.|+.+|++|||+||.+|.+...
T Consensus 1 ms~~~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL~~~~~ 80 (439)
T KOG0739|consen 1 MSNGSFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYLKEKEK 80 (439)
T ss_pred CCcchHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66 458999999999999999999999999999999999999999995 5669999999999999999999999998888
Q ss_pred CCCCCCCccccCCCCCCCCCCCCCCCCCCCChHHHHHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhh
Q 042771 79 GPAHNGDAAVATRPKTKPKDGGDGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQF 158 (436)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~ 158 (436)
.+..+++.+++..++..+..+.+.+. +..++.++++..+...|+.+.|+|+|+||.|++.+|++|+++|++|+.+|++
T Consensus 81 ~~~k~~~~a~a~~~~~k~~ds~~eg~--d~~pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPql 158 (439)
T KOG0739|consen 81 GAGKKGDEAVATVPKGKKKDSDGEGE--DDEPEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQL 158 (439)
T ss_pred CCCCCCccccCCCCCCCCCCcccccc--CCChhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhh
Confidence 88888877777666655554432222 2337888999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
|++.+.||++||||||||||||+||+++|.+.+..|+.|+.++++++|+|+++++++.+|+.|+.+.|+||||||||.|+
T Consensus 159 FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslc 238 (439)
T KOG0739|consen 159 FTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLC 238 (439)
T ss_pred hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCC
Q 042771 239 GQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPH 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~ 318 (436)
+.++.+ +++..+++..+||.+|.|+......++|+++||-||.||.+++|||.+.|++|+|+...|..+++.++...++
T Consensus 239 g~r~en-EseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~ 317 (439)
T KOG0739|consen 239 GSRSEN-ESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPH 317 (439)
T ss_pred cCCCCC-chHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCcc
Confidence 988765 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcC--------CCccCCCCCCchhhHhhHHHHhhh
Q 042771 319 NLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSN--------GMWMPCGPKQSGAVQISMQELAAK 390 (436)
Q Consensus 319 ~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 390 (436)
.+++.++..|+++|+||||+||.-+|++|++.++|+.+.++||+...+ ...+||+|.+++++++.|.++..+
T Consensus 318 ~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~d 397 (439)
T KOG0739|consen 318 VLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPAD 397 (439)
T ss_pred ccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHh
Confidence 999999999999999999999999999999999999999999997532 345899999999999999999887
Q ss_pred ccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCCC
Q 042771 391 GLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEEG 436 (436)
Q Consensus 391 ~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~~ 436 (436)
.+-. |+||+.||..++.+.+|+|+.+||...+++++.||++|
T Consensus 398 kl~e----P~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqEg 439 (439)
T KOG0739|consen 398 KLLE----PPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQEG 439 (439)
T ss_pred hccC----CCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccCC
Confidence 6544 99999999999999999999999999999999999998
No 2
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-62 Score=450.72 Aligned_cols=296 Identities=50% Similarity=0.852 Sum_probs=271.3
Q ss_pred HHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 114 KLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
.+.+.+++.|..+.|+++|+||.|++++|+.|+++|.+|+..|++|++..+||+++|++||||||||+||+|+|.+++.+
T Consensus 193 ~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT 272 (491)
T KOG0738|consen 193 DLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT 272 (491)
T ss_pred HHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe
Confidence 56677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc---
Q 042771 194 FFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK--- 270 (436)
Q Consensus 194 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~--- 270 (436)
||.|+.+.+.++|-|+++++++-+|+.|+.+.|++|||||||.|++.|+...+++.++++.++||.+|||+.....+
T Consensus 273 FFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 273 FFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred EEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999765555
Q ss_pred eEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 271 VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
|+|+++||.||+||++|+|||.+.|++|+|+.+.|..+++..+...... ++.+++.|++.++||||+||..+|++|.+.
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvCreAsm~ 431 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVCREASMM 431 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877664 788999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042771 351 PVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTK 430 (436)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~ 430 (436)
++||..... .+ +....++.+... .||+..||+.|+++++||++..++.+||+|..
T Consensus 432 ~mRR~i~g~----------------~~----~ei~~lakE~~~-----~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~ 486 (491)
T KOG0738|consen 432 AMRRKIAGL----------------TP----REIRQLAKEEPK-----MPVTNEDFEEALRKVRPSVSAADLEKYEKWMD 486 (491)
T ss_pred HHHHHHhcC----------------Cc----HHhhhhhhhccc-----cccchhhHHHHHHHcCcCCCHHHHHHHHHHHH
Confidence 999875321 11 112223332221 58999999999999999999999999999999
Q ss_pred HhCCC
Q 042771 431 EFGEE 435 (436)
Q Consensus 431 ~~~~~ 435 (436)
+||+.
T Consensus 487 efGS~ 491 (491)
T KOG0738|consen 487 EFGSC 491 (491)
T ss_pred HhcCC
Confidence 99974
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-52 Score=410.44 Aligned_cols=267 Identities=42% Similarity=0.719 Sum_probs=251.1
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.+..+.|+++|+||+|++++|+.|++.|.+|+++|+.|.+ +..|+++||||||||||||++|+++|++++++|+.+.+.
T Consensus 423 e~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgp 502 (693)
T KOG0730|consen 423 EILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGP 502 (693)
T ss_pred heeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCH
Confidence 3446789999999999999999999999999999999998 678999999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
++.++|+|+++..++.+|+.|+...|+|||+||||.+...|++. .++..++++++||++|||+. ..++|+||++||+|
T Consensus 503 EL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~-~~~v~~RVlsqLLtEmDG~e-~~k~V~ViAATNRp 580 (693)
T KOG0730|consen 503 ELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS-SSGVTDRVLSQLLTEMDGLE-ALKNVLVIAATNRP 580 (693)
T ss_pred HHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC-ccchHHHHHHHHHHHccccc-ccCcEEEEeccCCh
Confidence 99999999999999999999999999999999999999999744 55899999999999999994 45689999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.||++++| ||++.|++|+||.+.|.+||+.++++.+.. ++.++..||+.|+||||+||..+|++|++.++++....
T Consensus 581 d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~a 659 (693)
T KOG0730|consen 581 DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIEA 659 (693)
T ss_pred hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhccc
Confidence 999999999 999999999999999999999999988876 56799999999999999999999999999999987642
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKE 431 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~ 431 (436)
..|+.+||.+|++.++||++..+++.|+.+.+.
T Consensus 660 ----------------------------------------~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 660 ----------------------------------------TEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ----------------------------------------ccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 679999999999999999999999999999864
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-51 Score=375.35 Aligned_cols=253 Identities=41% Similarity=0.673 Sum_probs=232.9
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+...-+.+.|.++++||+|++++++.|++.+.+|+.+|++|.. +..||+|+|||||||||||.||+|+|++.+++|+.+
T Consensus 137 V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrv 216 (406)
T COG1222 137 VSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRV 216 (406)
T ss_pred hheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEe
Confidence 3344556889999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
.+++|..+|+|+....++.+|..|+.+.||||||||||.+.++|.... ......+.+-+||++|||+. +.++|-||+
T Consensus 217 vgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD-~~~nvKVI~ 295 (406)
T COG1222 217 VGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD-PRGNVKVIM 295 (406)
T ss_pred ccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-CCCCeEEEE
Confidence 999999999999999999999999999999999999999999886532 23345677778999999994 567899999
Q ss_pred ccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 276 ATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 276 ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
+||+++.|||+|+| ||++.|+||+|+.+.|.+||+.+..+.... .+.+++.||..++|+||+||+++|.+|.+.|+|
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR 374 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIR 374 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHH
Confidence 99999999999999 999999999999999999999999887765 788999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
+.+ ..||++||.+|..++.-
T Consensus 375 ~~R------------------------------------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 375 ERR------------------------------------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred hcc------------------------------------------CeecHHHHHHHHHHHHh
Confidence 886 47999999999988743
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.8e-51 Score=393.57 Aligned_cols=287 Identities=34% Similarity=0.590 Sum_probs=253.4
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..+......|.|+|+||+|+++++.+|..++..|+++|+.|+. +...+.|+|||||||||||.||+|+|++.+.+|+.|
T Consensus 497 akREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 497 AKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred hhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEee
Confidence 3444555789999999999999999999999999999999998 788889999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
...+|.++|+|+++..++.+|..|+...||||||||+|.|++.|+.. ......+++++||.+|||+. ....|+||++|
T Consensus 577 KGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~-~s~~s~RvvNqLLtElDGl~-~R~gV~viaAT 654 (802)
T KOG0733|consen 577 KGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE-GSSVSSRVVNQLLTELDGLE-ERRGVYVIAAT 654 (802)
T ss_pred cCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC-CchhHHHHHHHHHHHhcccc-cccceEEEeec
Confidence 99999999999999999999999999999999999999999999876 47788999999999999984 45679999999
Q ss_pred CCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCC-ChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHH
Q 042771 278 NTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNL-TESDFESLARKTE--GFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 278 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~-~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~ 352 (436)
|+|+.+||+++| ||++.+++++|+.++|..||+...++....+ ++.+++.||..+. ||||+||..||++|.+.|+
T Consensus 655 NRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL 734 (802)
T KOG0733|consen 655 NRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILAL 734 (802)
T ss_pred CCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998433333 6889999999876 9999999999999999999
Q ss_pred HhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 042771 353 RKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEF 432 (436)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~ 432 (436)
++...... ...+ ++.....+..+|+.||.+|+++++||+++.|-+.|++..+.+
T Consensus 735 ~~~~~~~~--~~~~------------------------~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~ 788 (802)
T KOG0733|consen 735 RESLFEID--SSED------------------------DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSR 788 (802)
T ss_pred HHHHhhcc--ccCc------------------------ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhh
Confidence 98753100 0000 000000025799999999999999999999999999999998
Q ss_pred C
Q 042771 433 G 433 (436)
Q Consensus 433 ~ 433 (436)
|
T Consensus 789 ~ 789 (802)
T KOG0733|consen 789 S 789 (802)
T ss_pred c
Confidence 7
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-49 Score=389.38 Aligned_cols=286 Identities=33% Similarity=0.583 Sum_probs=252.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.-..+.|+|+|+||+|++++|..|.+.+.+|+.+|++|..+.++..|||||||||||||.+|+|+|.++..+|+.|.+.+
T Consensus 661 iGAPKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE 740 (953)
T KOG0736|consen 661 IGAPKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE 740 (953)
T ss_pred cCCCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH
Confidence 34567899999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC-CCCchHHHHHHHHHHHHhhcCCC-CCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE-GNESEASRRIKTELLVQMQGVGH-NDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~-~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 279 (436)
+.+.|+|+++.+++.+|+.|+...|||||+||+|+|++.|+. +.+.+..+++.++||.+||++.. ....|+||++||+
T Consensus 741 LLNMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNR 820 (953)
T KOG0736|consen 741 LLNMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNR 820 (953)
T ss_pred HHHHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCC
Confidence 999999999999999999999999999999999999999985 44567889999999999999976 6678999999999
Q ss_pred CCcccHHHHh--hccceEEcCCCC-HHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC-CCCHHHHHHHHHHHhhhHHHhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPD-LKARQHMFKVHLGDTPHNLTESDFESLARKTE-GFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~-~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~-g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|+.|||+|+| |||+.+++.+++ .+.+..+|+...++.... .+.++..||+.+. .|||+|+-++|.+|++.|++|.
T Consensus 821 PDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~ 899 (953)
T KOG0736|consen 821 PDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRT 899 (953)
T ss_pred ccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999998765 677888999888776654 6789999999875 5899999999999999999998
Q ss_pred hhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Q 042771 356 QDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFG 433 (436)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~ 433 (436)
...... + .++..+. ......|+++||.+++++++||+|..++.+|+.++.+|.
T Consensus 900 i~~ie~-----g------------------~~~~~e~--~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 900 IHDIES-----G------------------TISEEEQ--ESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HHHhhh-----c------------------ccccccc--CCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 642110 0 0011111 111246999999999999999999999999999999995
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-46 Score=361.88 Aligned_cols=305 Identities=33% Similarity=0.525 Sum_probs=252.5
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
...++++|.||+|++.....|.+++.. +.+|+.|.. +..|++|+||+||||||||+||+++|++++.+|+.+++.+++
T Consensus 182 ~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeiv 260 (802)
T KOG0733|consen 182 FPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIV 260 (802)
T ss_pred CCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhh
Confidence 344589999999999999999999988 888988887 899999999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC---CCceEEEeccCCC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN---DQKVLVLAATNTP 280 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~---~~~v~vi~ttn~~ 280 (436)
+.+.|++++.++.+|+.|+...|||+||||||.+.++|... +.+..++++.+|+..||++... ...|+||++||+|
T Consensus 261 SGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a-qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRP 339 (802)
T KOG0733|consen 261 SGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA-QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRP 339 (802)
T ss_pred cccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH-HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCC
Confidence 99999999999999999999999999999999999999764 7788999999999999998654 4579999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.||++|+| ||++.|.+..|+..+|.+||+.++++..+. .+.++..||..|.||.|+||..||.+|++.|++|+.+.
T Consensus 340 DslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 340 DSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQ 418 (802)
T ss_pred cccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 999999999 999999999999999999999999877765 47899999999999999999999999999999998764
Q ss_pred hhhhhh--c---CC---------CccC---CCCCCchhhHhhHHHHhhhc--c-ccccCCCCcCHHHHHHHHhhCC----
Q 042771 359 MFFFKT--S---NG---------MWMP---CGPKQSGAVQISMQELAAKG--L-AEQILPPPISKTDFDKVLARQR---- 414 (436)
Q Consensus 359 ~~~~~~--~---~~---------~~~~---~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~vt~~d~~~al~~~~---- 414 (436)
...-.+ . +. .|.. .+.+...-.......+.... + ........|+.+||.+|+..++
T Consensus 419 ~~~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSak 498 (802)
T KOG0733|consen 419 SSSPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAK 498 (802)
T ss_pred ccCccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchh
Confidence 321000 0 00 0000 00000000001111121111 1 1133346799999999999998
Q ss_pred -------CCCCHHHHHHHHHHHHHh
Q 042771 415 -------PTVSKSDLEVQERFTKEF 432 (436)
Q Consensus 415 -------ps~s~~~~~~y~~~~~~~ 432 (436)
|.|+|++++.+++++.++
T Consensus 499 REGF~tVPdVtW~dIGaL~~vR~eL 523 (802)
T KOG0733|consen 499 REGFATVPDVTWDDIGALEEVRLEL 523 (802)
T ss_pred cccceecCCCChhhcccHHHHHHHH
Confidence 458999999999998875
No 8
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.5e-46 Score=356.03 Aligned_cols=292 Identities=49% Similarity=0.791 Sum_probs=265.1
Q ss_pred HHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce
Q 042771 115 LRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF 194 (436)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~ 194 (436)
...++.+.|....+++.|+|+.|++.+|+.+.+++++|+.++++|.+.+.+.+++||.||||+|||+|++++|.+++..|
T Consensus 135 ~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf 214 (428)
T KOG0740|consen 135 LIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF 214 (428)
T ss_pred hhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE
Confidence 44567777888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC-CCceEE
Q 042771 195 FSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-DQKVLV 273 (436)
Q Consensus 195 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~v 273 (436)
+.++++.+.++|+|+.++.++.+|..|+..+|+|+||||+|.++..+ .+..++..+++..+++..+++.... ..+|+|
T Consensus 215 f~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 215 FNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999999 5558888999999999999877543 448999
Q ss_pred EeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 274 LAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 274 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
|+|||.||.+|.+++|||.+++++|.|+.++|..+|..++...+..+.+.++..|++.|+||+++||.++|++|++..++
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 99999999999999999999999999999999999999999888888999999999999999999999999999999988
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFG 433 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~ 433 (436)
.....+. ...+. ....++++..||.+|++.++|++|...+..|++|..+||
T Consensus 374 ~~~~~~~-----------------------~~~~~------~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 374 ELGGTTD-----------------------LEFID------ADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred hcccchh-----------------------hhhcc------hhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhc
Confidence 8764100 00000 111278999999999999999999999999999999999
Q ss_pred CCC
Q 042771 434 EEG 436 (436)
Q Consensus 434 ~~~ 436 (436)
..+
T Consensus 425 ~~~ 427 (428)
T KOG0740|consen 425 SSE 427 (428)
T ss_pred ccc
Confidence 753
No 9
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-45 Score=336.46 Aligned_cols=300 Identities=37% Similarity=0.626 Sum_probs=254.9
Q ss_pred hccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 120 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 120 ~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
...+....-.|+|+||+|++.+++.|++.+.+|+++|++|.. ...|++||||+||||||||++|+++|++.+++|+.|
T Consensus 79 s~~v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 79 SDVVPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred hcccchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 344555566799999999999999999999999999999964 466889999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC-ceEEEec
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ-KVLVLAA 276 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~v~vi~t 276 (436)
+.+.+.++|.|+.+++++.+|..|.+..|+||||||+|.+.+.| ...+++....+.++|....||+....+ +|+|+++
T Consensus 159 ~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgA 237 (386)
T KOG0737|consen 159 SVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGA 237 (386)
T ss_pred eccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeC
Confidence 99999999999999999999999999999999999999999999 555899999999999999999966554 7999999
Q ss_pred cCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 277 TNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 277 tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
||+|.++|.+++||++..++++.|+...|.+||+.++...... ++.++..+|+.|+||||+||..+|+.|++.++++..
T Consensus 238 TNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~ 316 (386)
T KOG0737|consen 238 TNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELL 316 (386)
T ss_pred CCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHH
Confidence 9999999999999999999999999999999999999988776 788999999999999999999999999999999987
Q ss_pred hhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHhCC
Q 042771 357 DAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKS--DLEVQERFTKEFGE 434 (436)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~--~~~~y~~~~~~~~~ 434 (436)
... ......+.. ..... +..........++++++||..|...+.+|++.+ .....+.|.+.||.
T Consensus 317 ~~~-~~~~d~d~~-----------~~d~~--~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 317 VSE-TGLLDLDKA-----------IADLK--PTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred Hhc-ccchhhhhh-----------hhhcc--CCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 652 100000000 00000 000001122238999999999999999987654 44677899999986
Q ss_pred C
Q 042771 435 E 435 (436)
Q Consensus 435 ~ 435 (436)
=
T Consensus 383 ~ 383 (386)
T KOG0737|consen 383 G 383 (386)
T ss_pred c
Confidence 3
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.1e-42 Score=366.80 Aligned_cols=284 Identities=39% Similarity=0.681 Sum_probs=248.8
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.+.|.++|+||+|++.+|+.|.+.+.+|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.++++++.
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 4568899999999999999999999999999999987 667789999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 283 (436)
++|+|+++..++.+|..|+...|+||||||+|.|++.++.........+++++|+..|+++.. ..+++||+|||.|+.+
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~-~~~v~vI~aTn~~~~l 603 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE-LSNVVVIAATNRPDIL 603 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC-CCCEEEEEeCCChhhC
Confidence 999999999999999999999999999999999998887554556778999999999998743 4579999999999999
Q ss_pred cHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhh
Q 042771 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361 (436)
Q Consensus 284 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~ 361 (436)
|++++| ||+..+++++|+.++|.+||+.+....+.. ++.++..||..|+||+++||..+|++|.+.++++.......
T Consensus 604 d~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~~~ 682 (733)
T TIGR01243 604 DPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSPAK 682 (733)
T ss_pred CHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999998 999999999999999999999988776654 56789999999999999999999999999999987532100
Q ss_pred hhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCC
Q 042771 362 FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGE 434 (436)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~ 434 (436)
.. . ...... ......|+.+||.+|+++++||++.++++.|++|.++||.
T Consensus 683 ----~~------------~----~~~~~~----~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 683 ----EK------------L----EVGEEE----FLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred ----hh------------h----hccccc----ccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 00 0 000000 0111579999999999999999999999999999999985
No 11
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-42 Score=330.41 Aligned_cols=225 Identities=39% Similarity=0.651 Sum_probs=208.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
.+++|+||-|.+++|+.|++.|.+ ++.|.-|.. +...|++|||+||||||||+||+|+|.+.+.+|++.+.++|-..|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVef-LkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVEF-LKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHHH-hcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 478999999999999999998876 678888887 777789999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
+|.....++.+|..|+...||||||||||.+.++|.....+ ..+..+++||.+|||+.. +..|+||++||.|+.||++
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALDKA 455 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhhHH
Confidence 99999999999999999999999999999999988765333 789999999999999954 5579999999999999999
Q ss_pred HHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 287 IRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 287 l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
|.| ||+++|.+|.||..-|.+||..++.+.... .+.|...||+-|.||+|+||.++|++|++.|.....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDGA 526 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcCc
Confidence 999 999999999999999999999999987765 688999999999999999999999999998877664
No 12
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=5.4e-41 Score=295.01 Aligned_cols=244 Identities=31% Similarity=0.538 Sum_probs=214.1
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
..+.++|+|++|++++|+.-+-.+.+ +..|+.|..+ .|+++|||||||||||++|+++|++.+.+++.+.+.++.+.
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~y-LenPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGe 190 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEY-LENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHH-hhChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHH
Confidence 45778999999999999986655544 5677777644 45799999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccH
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQ 285 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~ 285 (436)
++|+....++.+|+.|++..|||+||||+|.+.-.+.-..-.+...++.+.||+.||++. .+..|+.|++||+|..||+
T Consensus 191 hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-eneGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 191 HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-ENEGVVTIAATNRPELLDP 269 (368)
T ss_pred HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-cCCceEEEeecCChhhcCH
Confidence 999999999999999999999999999999997776543334456788999999999996 4567999999999999999
Q ss_pred HHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHH-HHHHHHhhhHHHhhhhhhhhhhh
Q 042771 286 AIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS-VCVKDVLFEPVRKTQDAMFFFKT 364 (436)
Q Consensus 286 ~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~-~l~~~a~~~a~~~~~~~~~~~~~ 364 (436)
++++||...|+|.+|+.++|..|++.+.+..+..+ +.+++.++..|.|+|++||. .+++.|+..|+.+.+
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-------- 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-------- 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch--------
Confidence 99999999999999999999999999999888774 55699999999999999996 677888888888775
Q ss_pred cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 365 SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
..|+.+|+..|+++.+++
T Consensus 341 ----------------------------------e~v~~edie~al~k~r~~ 358 (368)
T COG1223 341 ----------------------------------EKVEREDIEKALKKERKR 358 (368)
T ss_pred ----------------------------------hhhhHHHHHHHHHhhccc
Confidence 369999999999986654
No 13
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-40 Score=335.57 Aligned_cols=258 Identities=46% Similarity=0.777 Sum_probs=236.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.+....+.++|+|++|++.+|+.+.+.+.+++.+++.|.. +..++.++|||||||||||+||+++|++++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4556788999999999999999999999999999999887 677888999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
++.++|+|++++.++.+|..|+...||||||||+|.+++.++.. ......+++++|+..|+++. ...+|+||++||.|
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~-~~~~~~r~~~~lL~~~d~~e-~~~~v~vi~aTN~p 388 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPS-EDGSGRRVVGQLLTELDGIE-KAEGVLVIAATNRP 388 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCC-CchHHHHHHHHHHHHhcCCC-ccCceEEEecCCCc
Confidence 99999999999999999999999999999999999999998754 33344799999999999884 45569999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCC-CChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHN-LTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
+.+|++++| ||+..+++++||.++|.+||+.++...... ..+.++..+++.++||+++||..+|++|.+.++++...
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~~ 468 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREARR 468 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999 999999999999999999999999865543 46889999999999999999999999999999887631
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERF 428 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~ 428 (436)
..||.+||.+|++.++||++ |++|
T Consensus 469 -----------------------------------------~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 469 -----------------------------------------REVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred -----------------------------------------CCccHHHHHHHHHhcCCCCC------hhhc
Confidence 58999999999999999999 8888
No 14
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=3.5e-39 Score=321.60 Aligned_cols=257 Identities=26% Similarity=0.400 Sum_probs=223.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
.+.++|+||+|++.+|+.|.+....... .....+..+++++|||||||||||++|+++|++++.+++.++++.+.+.|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 4678999999999999999875432111 11122556779999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
+|+++..++.+|..++...||||||||||.++..+......+...+++..|+..|+. ...+++||+|||.++.+|++
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPLE 376 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCHH
Confidence 999999999999999999999999999999987655444666788899999998874 34579999999999999999
Q ss_pred HHh--hccceEEcCCCCHHHHHHHHHHHhCCCCC-CCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhh
Q 042771 287 IRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPH-NLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFK 363 (436)
Q Consensus 287 l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~-~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~ 363 (436)
++| ||+..++++.|+.++|.+||+.++..... ...+.++..|+..|.||||+||..+|.+|...++.+.
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~-------- 448 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK-------- 448 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 998 99999999999999999999999987543 3457889999999999999999999999998876543
Q ss_pred hcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHH
Q 042771 364 TSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT--VSKSDLEVQERFTKE 431 (436)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps--~s~~~~~~y~~~~~~ 431 (436)
++++.+||..|++.+.|+ ...++|+.|++|...
T Consensus 449 -----------------------------------~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 449 -----------------------------------REFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------------------------------CCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 579999999999999997 467899999999874
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-40 Score=286.14 Aligned_cols=231 Identities=39% Similarity=0.657 Sum_probs=212.1
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
..+.|.+++.|++|++-.|+.+++++.+|+.+.+++.. +..|++++|+|||||||||+|++++|+.....|+.+..++|
T Consensus 146 ~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsef 225 (408)
T KOG0727|consen 146 PDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEF 225 (408)
T ss_pred CCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHH
Confidence 35789999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
..+|.|+....++.+|..|+.+.|+||||||+|.+..++-.. +......+++-+|+++|+|+. ...++-||++||+.
T Consensus 226 vqkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd-q~~nvkvimatnra 304 (408)
T KOG0727|consen 226 VQKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD-QTTNVKVIMATNRA 304 (408)
T ss_pred HHHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC-cccceEEEEecCcc
Confidence 999999999999999999999999999999999998877432 233345677778999999984 45679999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+.+||+++| |+++.|+||+||..+++-++.....+.... ++.+++.+...-+..|++||..+|++|.+.|+++.+
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr 381 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRENR 381 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc
Confidence 999999999 999999999999999999999988877665 678999999999999999999999999999999886
No 16
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-39 Score=317.99 Aligned_cols=271 Identities=32% Similarity=0.595 Sum_probs=234.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
..+.|+||+|+.++|+.|.+.+.+|.++|.+|.. ..+...|||||||||||||+||.++|..++..|+.+.+.++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 3489999999999999999999999999999998 566678999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
.|.++..++.+|..|+..+|||||+||+|+++++|+-. ..+..+++.++||.+|||... -..|.|+++|.+|+.+||+
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD-sTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD-STGVTDRVVNQLLTELDGAEG-LDGVYILAATSRPDLIDPA 819 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC-CCCchHHHHHHHHHhhccccc-cceEEEEEecCCccccCHh
Confidence 99999999999999999999999999999999999764 667899999999999999844 5679999999999999999
Q ss_pred HHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhh
Q 042771 287 IRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKT 364 (436)
Q Consensus 287 l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~ 364 (436)
++| |+++.++.+.|+..+|.+|++.+....... ++.+++.+|..|+||+|+||..++.+|.+.++++......
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~---- 894 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED---- 894 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC----
Confidence 999 999999999999999999999987665543 7899999999999999999999999999999998864310
Q ss_pred cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHH--hhCCCCCCHHHHHHHHHHHHHhCC
Q 042771 365 SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVL--ARQRPTVSKSDLEVQERFTKEFGE 434 (436)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al--~~~~ps~s~~~~~~y~~~~~~~~~ 434 (436)
. ... .+.++...+.... .+.+||.+.-+-..+.....+|-.
T Consensus 895 -~---~~~-------------------------~p~~~~~~~~si~~~~~~~~s~~~~~~~~~~~~~~~~~~ 937 (952)
T KOG0735|consen 895 -E---EGV-------------------------VPSIDDASLESIFSDSKRKPSRSALDNRKGQDVYSQFLS 937 (952)
T ss_pred -c---ccc-------------------------CCccchhhhhhhhhccCCCccccccchhhhhhHHHhhcC
Confidence 0 000 0224434443333 467788888777777777766643
No 17
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=309.61 Aligned_cols=252 Identities=38% Similarity=0.628 Sum_probs=224.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
.....+.|.++|+||+|++.+++.|.+.+.+|+.+|++|.. +..+++++|||||||||||++|+++|++++.+|+.+.+
T Consensus 133 ~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 133 LLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred hhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 34456789999999999999999999999999999999987 66788999999999999999999999999999999999
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
+++..+|.|+....++.+|..++...|+||||||+|.++..+.... ......+++..|+..++++.. ..+++||++|
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-~~~v~VI~aT 291 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-TTNVKVIMAT 291 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC-CCCEEEEEec
Confidence 9999999999999999999999999999999999999987764321 223456777889999988743 3468999999
Q ss_pred CCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 278 NTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 278 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|.++.+|++++| ||+..|+|+.|+.++|..||+.++...... .+.++..++..++||+++||..+|++|.+.++++.
T Consensus 292 N~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 292 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred CCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999998 999999999999999999999999876654 57789999999999999999999999999999876
Q ss_pred hhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 356 QDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
. ..|+.+||.+|++++...
T Consensus 371 ~------------------------------------------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 R------------------------------------------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred C------------------------------------------CccCHHHHHHHHHHHHhc
Confidence 4 479999999999987554
No 18
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=284.25 Aligned_cols=259 Identities=34% Similarity=0.568 Sum_probs=231.7
Q ss_pred hhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 118 GLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.+.-..+.+.|.-+++=++|++...+.+++.+.+|..+|++|.. +...|+++|||||||||||.||+++|+...+.|+.
T Consensus 132 LVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~fir 211 (404)
T KOG0728|consen 132 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIR 211 (404)
T ss_pred hhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEE
Confidence 44455667889999999999999999999999999999999998 77778999999999999999999999999999999
Q ss_pred EeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEE
Q 042771 197 ISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVL 274 (436)
Q Consensus 197 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 274 (436)
++.+++..+|.|+....++.+|-.|+.+.|+|||+||||++.+.+..++ ..+...+.+-+|++++||+ ....++-||
T Consensus 212 vsgselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgf-eatknikvi 290 (404)
T KOG0728|consen 212 VSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGF-EATKNIKVI 290 (404)
T ss_pred echHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccc-ccccceEEE
Confidence 9999999999999999999999999999999999999999988876432 2344566777899999998 456779999
Q ss_pred eccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 275 AATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 275 ~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
.+||+.+-+|++++| |+++.|+||+|+.+.|.+||+.+-.+.+.. ...++..+|+...|.||+++..+|.+|.+.|+
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~al 369 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYAL 369 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHH
Confidence 999999999999999 999999999999999999999987766553 56789999999999999999999999999999
Q ss_pred HhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHH
Q 042771 353 RKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKS 420 (436)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~ 420 (436)
++.+ -+||++||+-|..++-..-++.
T Consensus 370 rerr------------------------------------------vhvtqedfemav~kvm~k~~e~ 395 (404)
T KOG0728|consen 370 RERR------------------------------------------VHVTQEDFEMAVAKVMQKDSEK 395 (404)
T ss_pred HHhh------------------------------------------ccccHHHHHHHHHHHHhccccc
Confidence 9876 5899999999998875544443
No 19
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.2e-39 Score=325.94 Aligned_cols=230 Identities=42% Similarity=0.657 Sum_probs=212.5
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.....|+|.||+|.+++|+.|.+.|.+ +++|+.|.. +...|+|+||+||||||||.||+|+|.+.+.||+.+++++|.
T Consensus 303 ~~~t~V~FkDVAG~deAK~El~E~V~f-LKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFv 381 (774)
T KOG0731|consen 303 EGNTGVKFKDVAGVDEAKEELMEFVKF-LKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFV 381 (774)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHH-hcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHH
Confidence 344569999999999999999998877 788888887 888899999999999999999999999999999999999999
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCC---CCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG---EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
..++|.....++.+|..++...||||||||||.+...++ ....+......+++|+.+||++... ..|+|+++||++
T Consensus 382 E~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRP 460 (774)
T ss_pred HHhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCc
Confidence 999999999999999999999999999999999998884 3345666778899999999999655 779999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+.||++++| ||++.|+++.|+...|..|++.++.......++.++..||.+|.||+|+||.++|++|++.+.++..
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~ 538 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL 538 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc
Confidence 999999999 9999999999999999999999999888776788899999999999999999999999999999875
No 20
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-39 Score=281.72 Aligned_cols=257 Identities=32% Similarity=0.594 Sum_probs=230.3
Q ss_pred HHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 114 KLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
++...+.-..+.+.|.-+++||+|++...+.|.+++.+|+.+++.|.. +..||+++|+|||||||||.+|++.|...+.
T Consensus 152 eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~a 231 (424)
T KOG0652|consen 152 EYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNA 231 (424)
T ss_pred hhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccc
Confidence 444555666678889999999999999999999999999999999998 8899999999999999999999999999999
Q ss_pred ceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCc
Q 042771 193 TFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 193 ~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
.|+.+-...+...|.|...++++..|..|+...|+||||||+|.+..++-.+.. .....+.+-+||++++|++ +...
T Consensus 232 TFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs-s~~~ 310 (424)
T KOG0652|consen 232 TFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-SDDR 310 (424)
T ss_pred hHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-Cccc
Confidence 999999999999999999999999999999999999999999999887754321 1233455667889999985 4567
Q ss_pred eEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 271 VLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
+-||++||+.+-|||+++| |+++.|+||.|+.+.|..|++.+..+.... ++.++++||+.|++|+|+.+..+|-+|.
T Consensus 311 vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcVEAG 389 (424)
T KOG0652|consen 311 VKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCVEAG 389 (424)
T ss_pred eEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeehhhh
Confidence 9999999999999999998 999999999999999999999998777665 7889999999999999999999999999
Q ss_pred hhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC
Q 042771 349 FEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR 414 (436)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ 414 (436)
+.|+++.. ..|+++||.+++..++
T Consensus 390 MiALRr~a------------------------------------------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 390 MIALRRGA------------------------------------------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred HHHHhccc------------------------------------------ccccHHHHHHHHHHHH
Confidence 99999875 4699999999987765
No 21
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-39 Score=287.34 Aligned_cols=246 Identities=35% Similarity=0.623 Sum_probs=221.2
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
..+.|.-++.|++|++...+.+++.+.+|+.+|+++.. +..||++++|||+||||||.||+|+|+.....|+++-.+++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 34667789999999999999999999999999999998 88999999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
..+|.|+..++++++|..|..+.|+|+||||||.+..+|-..++ .....+.+-+||++++|+.. .+.|-||++||..
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds-rgDvKvimATnri 334 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS-RGDVKVIMATNRI 334 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc-cCCeEEEEecccc
Confidence 99999999999999999999999999999999999887743311 12234445578899999854 5679999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.|||+|.| |+++.|.|+.||...++.||..+....... .+..++.+...-+.+||+||.++|.+|.+.|+|+.+
T Consensus 335 e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRerR-- 411 (440)
T KOG0726|consen 335 ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRERR-- 411 (440)
T ss_pred cccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHHH--
Confidence 999999999 999999999999999999999988776654 677899999998999999999999999999999886
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
-.|+.+||..|..++
T Consensus 412 ----------------------------------------m~vt~~DF~ka~e~V 426 (440)
T KOG0726|consen 412 ----------------------------------------MKVTMEDFKKAKEKV 426 (440)
T ss_pred ----------------------------------------hhccHHHHHHHHHHH
Confidence 479999999998776
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7e-38 Score=307.98 Aligned_cols=256 Identities=40% Similarity=0.644 Sum_probs=225.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
.....+.|.++|+||+|++++++.|.+.+..|+.+++.|.. +..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 119 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 119 AMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred eeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 34456778999999999999999999999999999999987 67788999999999999999999999999999999999
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
+++...|.|+....++.+|..+....|+||||||+|.+++.+..... .....+.+..|+..+++.. ...++.||+||
T Consensus 199 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~-~~~~v~VI~aT 277 (389)
T PRK03992 199 SELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFD-PRGNVKIIAAT 277 (389)
T ss_pred HHHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccC-CCCCEEEEEec
Confidence 99999999999999999999999999999999999999877654321 2234555667787887763 34579999999
Q ss_pred CCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 278 NTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 278 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|.++.+|++++| ||+..|+|++|+.++|.+||+.++...... .+.++..|+..|.||+++||..+|++|.+.++++.
T Consensus 278 n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999998 999999999999999999999998776553 45789999999999999999999999999998865
Q ss_pred hhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHH
Q 042771 356 QDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKS 420 (436)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~ 420 (436)
. ..|+.+||.+|+.+++|+...+
T Consensus 357 ~------------------------------------------~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 R------------------------------------------TEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred C------------------------------------------CCcCHHHHHHHHHHHhcccccc
Confidence 3 4699999999999999876544
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-37 Score=275.13 Aligned_cols=247 Identities=36% Similarity=0.604 Sum_probs=222.2
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
-+.+.|.++++|++|..+..+.|++.+..|+.+|+.|-. +..|++++|+|||||||||.+|+++|+..+..|+.+-.++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 346789999999999999999999999999999999887 8899999999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+..+|+|+....++.+|+.|+..+.||||+||||.+.+.+-.. +......+.+-+|+++++|+ .+.+++-|+++||+
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf-dprgnikvlmatnr 325 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF-DPRGNIKVLMATNR 325 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC-CCCCCeEEEeecCC
Confidence 9999999999999999999999999999999999998877432 12233455666788999998 45678999999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
|+.|||+|+| |+++.++|.+|+.+.|..|++.+....... .+.-++.||+.+..-++++|+++|.+|.+.|++..+
T Consensus 326 pdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairarr- 403 (435)
T KOG0729|consen 326 PDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR- 403 (435)
T ss_pred CCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-
Confidence 9999999999 999999999999999999999887766554 466788899999999999999999999999999876
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
...|..||.+|+.++
T Consensus 404 -----------------------------------------k~atekdfl~av~kv 418 (435)
T KOG0729|consen 404 -----------------------------------------KVATEKDFLDAVNKV 418 (435)
T ss_pred -----------------------------------------hhhhHHHHHHHHHHH
Confidence 468999999999876
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=5.9e-37 Score=301.26 Aligned_cols=249 Identities=35% Similarity=0.605 Sum_probs=220.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..+.+.|.++|+||+|++.+++.|.+++.+|+.++++|.. +..++.++|||||||||||++|+++|++++.+|+.+..+
T Consensus 172 ~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~s 251 (438)
T PTZ00361 172 MKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGS 251 (438)
T ss_pred cccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecc
Confidence 3456789999999999999999999999999999999987 677889999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
++...|.|+....++.+|..+..+.|+||||||||.++.++.... ......+.+..|+..++++. ...++.||++||
T Consensus 252 eL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-~~~~V~VI~ATN 330 (438)
T PTZ00361 252 ELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-SRGDVKVIMATN 330 (438)
T ss_pred hhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-ccCCeEEEEecC
Confidence 999999999999999999999999999999999999987764321 12234456677888888774 344689999999
Q ss_pred CCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 279 TPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 279 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
.++.+|++++| ||+..|+|+.|+.++|.+||+.++...... .+.++..++..+.||+++||..+|++|.+.|+++.+
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999987 999999999999999999999998776553 567899999999999999999999999999998764
Q ss_pred hhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC
Q 042771 357 DAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR 414 (436)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ 414 (436)
..|+.+||..|+.++.
T Consensus 410 ------------------------------------------~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 410 ------------------------------------------MKVTQADFRKAKEKVL 425 (438)
T ss_pred ------------------------------------------CccCHHHHHHHHHHHH
Confidence 4799999999999874
No 25
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=3.8e-36 Score=305.76 Aligned_cols=248 Identities=42% Similarity=0.683 Sum_probs=217.2
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
...+.|.++|+||+|++++|+.|.+++.. +.+++.|.. +..+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 45 ~~~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~ 123 (495)
T TIGR01241 45 LNEEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSD 123 (495)
T ss_pred ccCCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHH
Confidence 44567899999999999999999998876 677777765 5677799999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+.+.+.|.....++.+|..++...|+||||||||.++..+... ........+++.|+..|+++.. ..+++||+|||.
T Consensus 124 ~~~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-~~~v~vI~aTn~ 202 (495)
T TIGR01241 124 FVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-NTGVIVIAATNR 202 (495)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-CCCeEEEEecCC
Confidence 9999999999999999999999999999999999998777542 2234556788999999998743 456999999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
++.+|++++| ||+..++++.|+.++|.+||+.++...+.. ++.++..++..+.||+++||..+|++|.+.+.++..
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~~- 280 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKNK- 280 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 9999999998 999999999999999999999999876554 567899999999999999999999999887766542
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
..|+.+||..|+.++.+
T Consensus 281 -----------------------------------------~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 281 -----------------------------------------TEITMNDIEEAIDRVIA 297 (495)
T ss_pred -----------------------------------------CCCCHHHHHHHHHHHhc
Confidence 57999999999998743
No 26
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-36 Score=301.17 Aligned_cols=227 Identities=42% Similarity=0.707 Sum_probs=208.8
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
...++|.|+.|.+++|+.|.+.|.+ ++.|..|+. +..-|+++||+||||||||+||+++|.+.+.||+.++.+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdf-Lk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDF-LKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHH-HhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 5779999999999999999998877 566666665 66788999999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE--GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 283 (436)
|+|-....++.+|..++++.||||||||+|.+...|+. ++.++.....+++||.+||++. .+..|+|+++||+|+-+
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpdVl 301 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPDVL 301 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcccc
Confidence 99999999999999999999999999999999888753 3456677789999999999996 45679999999999999
Q ss_pred cHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 284 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
|++|+| ||++.|.++.||...|.+|++.+....+.. .+.++..+|+.|.||+++|+..++++|++.+.++..
T Consensus 302 D~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~ 375 (596)
T COG0465 302 DPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK 375 (596)
T ss_pred hHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC
Confidence 999999 999999999999999999999999888876 788899999999999999999999999999999875
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=100.00 E-value=1.9e-34 Score=282.67 Aligned_cols=249 Identities=39% Similarity=0.687 Sum_probs=216.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
.....+.|.++|+||+|++++++.|.+++..++.+++.|.. +..+++++||+||||||||++|+++|++++.+++.+.+
T Consensus 110 ~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~ 189 (364)
T TIGR01242 110 GMEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 189 (364)
T ss_pred cceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence 34455779999999999999999999999999999999886 66778999999999999999999999999999999999
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
.++...+.|+....++.+|..++...|+||||||+|.+...+..... .......+..++..++++. ..+++.||+||
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~-~~~~v~vI~tt 268 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFD-PRGNVKVIAAT 268 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCC-CCCCEEEEEec
Confidence 99999999999999999999999999999999999999876543211 2233455667777787663 23578999999
Q ss_pred CCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 278 NTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 278 n~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|.++.+++++++ ||+..++++.|+.++|.+||+.++...... .+.++..|+..+.||+++||..+|++|.+.|+++.
T Consensus 269 n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 269 NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 999999999999999999999988765543 34689999999999999999999999999998865
Q ss_pred hhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 356 QDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
. ..|+.+||.+|+.++
T Consensus 348 ~------------------------------------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 R------------------------------------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred C------------------------------------------CccCHHHHHHHHHHh
Confidence 3 479999999999875
No 28
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-34 Score=285.69 Aligned_cols=222 Identities=38% Similarity=0.685 Sum_probs=209.3
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
++++ ++++|.......+.+.+.+|+.++..+.. +..+++++|+|||||||||.+++++|++.++.++.++++++++++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 6777 89999999999999999999999999987 788889999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccH
Q 042771 207 MGESEKLVSSLFQMARESA-PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQ 285 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~ 285 (436)
.|++++.++..|+.+..++ |++|||||+|.+++++..... ...++..+|+..|++.. ...+++||++||+|..||+
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~-~~~~vivl~atnrp~sld~ 335 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLK-PDAKVIVLAATNRPDSLDP 335 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCc-CcCcEEEEEecCCccccCh
Confidence 9999999999999999999 999999999999998865422 78999999999999984 4578999999999999999
Q ss_pred HHHh-hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHh
Q 042771 286 AIRR-RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 286 ~l~~-Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~ 354 (436)
+++| ||++.+.+..|+...|.+|++.+++..+.. ++.++..+|..+.||+|+||..+|++|.+.+.++
T Consensus 336 alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 336 ALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR 404 (693)
T ss_pred hhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh
Confidence 9999 999999999999999999999999988876 7899999999999999999999999999999887
No 29
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=100.00 E-value=3.3e-34 Score=285.34 Aligned_cols=285 Identities=29% Similarity=0.476 Sum_probs=216.5
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCc----
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADST---- 193 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~---- 193 (436)
+...+..+.|.++|+||+|++..++.+++.+..|+.++++|.. +..+++++|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 4455677889999999999999999999999999999999986 67788999999999999999999999998644
Q ss_pred ------eEEEeccchhhhhhchHHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 194 ------FFSISSSDLVSKWMGESEKLVSSLFQMARES----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 194 ------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
|+.+..+++.++|.|+++..++.+|..++.. .|+||||||+|.++..++.+..++....++++|+..|++
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 5667778888999999999999999988764 699999999999998876655556677888999999998
Q ss_pred CCCCCCceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHH
Q 042771 264 VGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS 341 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~ 341 (436)
+.. ..+++||+|||.++.||++++| ||+..|+|+.|+.++|.+||+.++.... .+ +.+ +..+.|++++++.
T Consensus 328 l~~-~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l-~l-~~~----l~~~~g~~~a~~~ 400 (512)
T TIGR03689 328 VES-LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSL-PL-DAD----LAEFDGDREATAA 400 (512)
T ss_pred ccc-CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccC-Cc-hHH----HHHhcCCCHHHHH
Confidence 843 4579999999999999999999 9999999999999999999999986532 22 222 2346789999999
Q ss_pred HHHHHHhhhHHHhhhhhhhhhhh--cCCCccC--CCCCCchhhHhhHHHHhh----hccccccCCCCcCHHHHHHHHhh
Q 042771 342 VCVKDVLFEPVRKTQDAMFFFKT--SNGMWMP--CGPKQSGAVQISMQELAA----KGLAEQILPPPISKTDFDKVLAR 412 (436)
Q Consensus 342 ~l~~~a~~~a~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~vt~~d~~~al~~ 412 (436)
.+|+++....+..... ..+... .++.+.. -+.-..++.-..+.+-+. .+.- ......++.+|+..|+..
T Consensus 401 al~~~av~~~~a~~~~-~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~-~~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 401 ALIQRAVDHLYATSEE-NRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHI-TGGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHHHHHhhhhcc-cceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHH-hcCCcCcCHHHHHHHHHH
Confidence 9999987655543322 112211 1111211 112223343333322222 1110 112258999999999864
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=6.7e-34 Score=292.26 Aligned_cols=243 Identities=37% Similarity=0.635 Sum_probs=211.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
..+.++|+||+|++++++.+.+.+.. +..++.|.. +...++++||+||||||||++|+++|++++.+++.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34568999999999999999998766 566777665 5667789999999999999999999999999999999999988
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC--CCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE--GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.+.|.....++.+|..+....|+||||||+|.+...++. +..+.....+++.|+..++++.. ..+++||++||.++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~-~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG-NKGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC-CCCeeEEEecCchHh
Confidence 888888888999999999999999999999999876643 22344566788899999998743 457999999999999
Q ss_pred ccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhh
Q 042771 283 LDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360 (436)
Q Consensus 283 l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~ 360 (436)
+|++++| ||+..+.++.|+.++|.+||+.++..... .++.++..|+..+.||+++||..+|++|++.+.++..
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~~---- 408 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAAILTARRKK---- 408 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCC----
Confidence 9999998 99999999999999999999999987544 3577899999999999999999999999988776543
Q ss_pred hhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 361 FFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
..||.+||.+|+.++
T Consensus 409 --------------------------------------~~It~~dl~~Ai~rv 423 (638)
T CHL00176 409 --------------------------------------ATITMKEIDTAIDRV 423 (638)
T ss_pred --------------------------------------CCcCHHHHHHHHHHH
Confidence 579999999999876
No 31
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-34 Score=257.13 Aligned_cols=237 Identities=35% Similarity=0.588 Sum_probs=206.6
Q ss_pred hhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 118 GLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.+.+.......+++|+.+.|.-.+...+.+.+..|+..|.+|.. +..+|.+++||||||||||.+|+++|..++++|+.
T Consensus 117 ~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 117 LVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred HHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 34444455667789999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEE
Q 042771 197 ISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVL 274 (436)
Q Consensus 197 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 274 (436)
+..+++.++|.|++...++..|..|+.+.|||||+||||.+.+.+... ..+....+.+..|+++|++.. ..++|-+|
T Consensus 197 v~ss~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd-~l~rVk~I 275 (388)
T KOG0651|consen 197 VVSSALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD-TLHRVKTI 275 (388)
T ss_pred eeHhhhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch-hcccccEE
Confidence 999999999999999999999999999999999999999998877432 123334555567777888773 45679999
Q ss_pred eccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 275 AATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 275 ~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
+|||+|+.|+|+|+| |+++.++.|.|+...|..|++.+...... ..+.+.+.+.+.++||+++|++..|.+|.+.++
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~ 354 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-HGEIDDEAILKLVDGFNGADLRNVCTEAGMFAI 354 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccc-cccccHHHHHHHHhccChHHHhhhccccccccc
Confidence 999999999999999 99999999999999999988876554332 245568889999999999999999999999888
Q ss_pred Hhhh
Q 042771 353 RKTQ 356 (436)
Q Consensus 353 ~~~~ 356 (436)
++..
T Consensus 355 ~~~~ 358 (388)
T KOG0651|consen 355 PEER 358 (388)
T ss_pred chhh
Confidence 8765
No 32
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.9e-32 Score=288.46 Aligned_cols=266 Identities=39% Similarity=0.660 Sum_probs=224.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
..+.++|+||+|++.+++.|.+++.+++.+|++|.. +..++.++|||||||||||++++++|++++.+++.+++.++.+
T Consensus 171 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~ 250 (733)
T TIGR01243 171 KVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS 250 (733)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc
Confidence 357899999999999999999999999999999987 6677899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 284 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~ 284 (436)
.+.|..+..++.+|..+....|+||||||+|.+++.+... ......++.+.|+..|+++. ....++||++||.++.+|
T Consensus 251 ~~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~-~~~~~~~~~~~Ll~~ld~l~-~~~~vivI~atn~~~~ld 328 (733)
T TIGR01243 251 KYYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEV-TGEVEKRVVAQLLTLMDGLK-GRGRVIVIGATNRPDALD 328 (733)
T ss_pred ccccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCC-cchHHHHHHHHHHHHhhccc-cCCCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998876543 34556788899999999874 345789999999999999
Q ss_pred HHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhh
Q 042771 285 QAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFF 362 (436)
Q Consensus 285 ~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~ 362 (436)
+++++ ||+..+.++.|+.++|.+||+.+....... .+.++..++..+.||+++||..+|+.|.+.++++........
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~ 407 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKIN 407 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 99998 999999999999999999999888765543 567899999999999999999999999999988765311000
Q ss_pred hhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCC
Q 042771 363 KTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTV 417 (436)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~ 417 (436)
. ....+.... .....|+.+||..|++.++|+.
T Consensus 408 ~-------------------~~~~i~~~~----~~~~~v~~~df~~Al~~v~ps~ 439 (733)
T TIGR01243 408 F-------------------EAEEIPAEV----LKELKVTMKDFMEALKMVEPSA 439 (733)
T ss_pred c-------------------ccccccchh----cccccccHHHHHHHHhhccccc
Confidence 0 000011110 1115699999999999888763
No 33
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-33 Score=288.39 Aligned_cols=231 Identities=36% Similarity=0.655 Sum_probs=212.7
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEec
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISS 199 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~ 199 (436)
....+.|++|+|++.+++.|++.|..|+.+|+.|.. ...|++++||+||||||||..|+++|..+ ...|+.-..
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 345689999999999999999999999999999997 78888999999999999999999999987 356777889
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
.+..++|+|+.+..++.+|+.|+...|+|||+||||-|++.++.. +......++..||..|+|+. ..+.|+||++||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSsk-qEqih~SIvSTLLaLmdGld-sRgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSK-QEQIHASIVSTLLALMDGLD-SRGQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccch-HHHhhhhHHHHHHHhccCCC-CCCceEEEcccCC
Confidence 999999999999999999999999999999999999999988654 55566778899999999995 4567999999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
|+.++++++| ||++.++|++|+.+.|.+|+..+.......++...+..||+.+.||.++||+.+|.+|++.++++...
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 9999999999 99999999999999999999999988888888999999999999999999999999999999998764
Q ss_pred h
Q 042771 358 A 358 (436)
Q Consensus 358 ~ 358 (436)
.
T Consensus 496 q 496 (1080)
T KOG0732|consen 496 Q 496 (1080)
T ss_pred e
Confidence 3
No 34
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=5.5e-32 Score=281.36 Aligned_cols=246 Identities=36% Similarity=0.607 Sum_probs=212.7
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
.....+|+|+.|.+.+++.|.+.+.+. ..+..+.. +...+++++|+||||||||+++++++++++.+|+.++++++..
T Consensus 145 ~~~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~ 223 (644)
T PRK10733 145 DQIKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE 223 (644)
T ss_pred hhhhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH
Confidence 345678999999999999999988763 44444443 4455688999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.+.+.....++.+|..++...|+||||||+|.+...+..+ ..+.....+++.|+..|+++.. ...++||+|||.|+.
T Consensus 224 ~~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-~~~vivIaaTN~p~~ 302 (644)
T PRK10733 224 MFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPDV 302 (644)
T ss_pred hhhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-CCCeeEEEecCChhh
Confidence 9999999999999999999999999999999998776542 2344566788999999998843 456999999999999
Q ss_pred ccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhh
Q 042771 283 LDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360 (436)
Q Consensus 283 l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~ 360 (436)
+|++++| ||++.+.++.|+.++|.+||+.++...+.. .+.++..+++.+.||+++||..+|++|...+.++..
T Consensus 303 lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~~---- 377 (644)
T PRK10733 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK---- 377 (644)
T ss_pred cCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 9999998 999999999999999999999999877654 467889999999999999999999999999887543
Q ss_pred hhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 361 FFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
..|+..||.+|+.++.+.
T Consensus 378 --------------------------------------~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 378 --------------------------------------RVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred --------------------------------------CcccHHHHHHHHHHHhcc
Confidence 579999999999877654
No 35
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=256.59 Aligned_cols=273 Identities=29% Similarity=0.473 Sum_probs=220.3
Q ss_pred CCCCcccc--ccCcH-HHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCC-ceEEEeccc
Q 042771 127 KPNVKWND--VAGLE-SAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADS-TFFSISSSD 201 (436)
Q Consensus 127 ~~~~~~~d--l~G~~-~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~-~~~~v~~~~ 201 (436)
.|.-.|++ |+|++ +.-...++++...+-.|+.... +....+++|||||||||||.+||.|.+-++. .--.||..+
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 46667776 46776 4444556666655555666655 6677799999999999999999999999864 556789999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhc--------CCeEEEEccccccccCCCCC-CCchHHHHHHHHHHHHhhcCCCCCCceE
Q 042771 202 LVSKWMGESEKLVSSLFQMARES--------APSIIFIDEIDSLCGQRGEG-NESEASRRIKTELLVQMQGVGHNDQKVL 272 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~--------~p~il~iDeid~l~~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 272 (436)
+.++|+|+++.+++.+|..|... .-.||++||||.+|..|++. +..+..+.+.++||..|||+. .-.+++
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVe-qLNNIL 371 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVE-QLNNIL 371 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHH-hhhcEE
Confidence 99999999999999999988542 22499999999999998763 347788999999999999984 456799
Q ss_pred EEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCC---CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 273 VLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGD---TPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 273 vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~---~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
||+-||+.+.+|++|+| ||...+++.+||...|.+|++.+... ....-++.++.+||..|..|||++|..+|+.|
T Consensus 372 VIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA 451 (744)
T KOG0741|consen 372 VIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSA 451 (744)
T ss_pred EEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHH
Confidence 99999999999999999 99999999999999999999887653 23333688999999999999999999999999
Q ss_pred hhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC--CCHHHHHHH
Q 042771 348 LFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT--VSKSDLEVQ 425 (436)
Q Consensus 348 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps--~s~~~~~~y 425 (436)
.-.|+.|+.... +..+.....+ ....|+.+||..|+..++|+ +|++++++|
T Consensus 452 ~S~A~nR~vk~~------------------~~~~~~~~~~---------e~lkV~r~DFl~aL~dVkPAFG~see~l~~~ 504 (744)
T KOG0741|consen 452 QSFAMNRHVKAG------------------GKVEVDPVAI---------ENLKVTRGDFLNALEDVKPAFGISEEDLERF 504 (744)
T ss_pred HHHHHHhhhccC------------------cceecCchhh---------hheeecHHHHHHHHHhcCcccCCCHHHHHHH
Confidence 999999886431 0000101111 11579999999999999999 778998887
Q ss_pred HH
Q 042771 426 ER 427 (436)
Q Consensus 426 ~~ 427 (436)
..
T Consensus 505 ~~ 506 (744)
T KOG0741|consen 505 VM 506 (744)
T ss_pred Hh
Confidence 64
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.97 E-value=1.2e-30 Score=281.74 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=156.8
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh-----------------------------------
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW----------------------------------- 206 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~----------------------------------- 206 (436)
+..+++||||+||||||||+||+++|.++++||+.++++++...+
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 567889999999999999999999999999999999999988643
Q ss_pred ------hchH--HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--CCCceEEEec
Q 042771 207 ------MGES--EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--NDQKVLVLAA 276 (436)
Q Consensus 207 ------~g~~--~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~v~vi~t 276 (436)
++.. ...++.+|+.|+..+||||||||||.|..... ....++.|+..|++... ...+|+||||
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 1112 23478899999999999999999999975421 12237888999987632 3457999999
Q ss_pred cCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 277 TNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLT--ESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 277 tn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~--~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
||.|+.||||++| ||++.|.++.|+..+|.+++..++......+. ..++..+|..|.||+|+||..+|++|++.++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999988865433333333 3478999999999999999999999999999
Q ss_pred Hhhh
Q 042771 353 RKTQ 356 (436)
Q Consensus 353 ~~~~ 356 (436)
++..
T Consensus 1859 rq~k 1862 (2281)
T CHL00206 1859 TQKK 1862 (2281)
T ss_pred HcCC
Confidence 9874
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.97 E-value=3.4e-30 Score=241.34 Aligned_cols=222 Identities=18% Similarity=0.218 Sum_probs=169.2
Q ss_pred CCCccccc-cCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDV-AGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl-~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
...+|+++ .|..-.+.-+...+....+ .-+...+.+++.+++||||||||||++|+++|++++++++.+++.++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~k-n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAK-NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHh-hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34577777 4444444444333322111 111113567889999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHh-----cCCeEEEEccccccccCCCCCCCchHHHHH-HHHHHHHhhcCC-----------CCCC
Q 042771 207 MGESEKLVSSLFQMARE-----SAPSIIFIDEIDSLCGQRGEGNESEASRRI-KTELLVQMQGVG-----------HNDQ 269 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~-~~~ll~~l~~~~-----------~~~~ 269 (436)
+|++++.++.+|..|.. .+||||||||||.+++.++.. ......++ ..+|++.+|+.. ....
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~ 267 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIP 267 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCC-CcchHHHHHHHHHHHHhcCCccccccccccccccCC
Confidence 99999999999999975 479999999999999988643 33443444 579999988631 2356
Q ss_pred ceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC----CCHHHHHHH
Q 042771 270 KVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG----FSGSDISVC 343 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g----~s~~dl~~l 343 (436)
+|+||+|||+|+.||++|+| ||++.+ ..|+.++|.+||+.+++... ++..++..|+..+.| |.|+--..+
T Consensus 268 ~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 268 RVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 79999999999999999999 999865 47999999999999998764 568899999999877 445444445
Q ss_pred HHHHhhhHHHhh
Q 042771 344 VKDVLFEPVRKT 355 (436)
Q Consensus 344 ~~~a~~~a~~~~ 355 (436)
..++....+.+.
T Consensus 344 yd~~v~~~i~~~ 355 (413)
T PLN00020 344 YDDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHHh
Confidence 555554444443
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.91 E-value=1.7e-23 Score=197.16 Aligned_cols=215 Identities=18% Similarity=0.286 Sum_probs=164.2
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcC-C---CCCCcceEEecCCcchHHHHHHHHHHHc-------CCceEEEeccc
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTG-K---RQPWRAFLLYGPPGTGKSYLAKAVATEA-------DSTFFSISSSD 201 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~---~~~~~~iLl~GppGtGKT~la~aia~~l-------~~~~~~v~~~~ 201 (436)
.+++|++.+|++|.+++.+.. .+..... + ..++.+++|+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 479999999999999876532 2233321 2 2234579999999999999999999875 23689999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP- 280 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~- 280 (436)
+.+.+.|.+......++..+. ++||||||+|.|...+. ..+....++..|+..|+.. ..+++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~~ 172 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKDR 172 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 999999888777777777653 46999999999865322 2345677888898888753 3456777776532
Q ss_pred ----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH------cCCCC-HHHHHHHHHHHhh
Q 042771 281 ----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK------TEGFS-GSDISVCVKDVLF 349 (436)
Q Consensus 281 ----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~------t~g~s-~~dl~~l~~~a~~ 349 (436)
..++|++++||+..+.|++++.+++.+|+..++......+++.....+... ...|. +++++.+++.+..
T Consensus 173 ~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~ 252 (287)
T CHL00181 173 MDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARM 252 (287)
T ss_pred HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 244699999999999999999999999999999887777777766665553 23344 8999999999998
Q ss_pred hHHHhhhh
Q 042771 350 EPVRKTQD 357 (436)
Q Consensus 350 ~a~~~~~~ 357 (436)
....|...
T Consensus 253 ~~~~r~~~ 260 (287)
T CHL00181 253 RQANRIFE 260 (287)
T ss_pred HHHHHHHc
Confidence 87777753
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.91 E-value=5.3e-23 Score=192.61 Aligned_cols=216 Identities=17% Similarity=0.232 Sum_probs=163.3
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCC---CCCcceEEecCCcchHHHHHHHHHHHc-------CCceEEEecc
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKR---QPWRAFLLYGPPGTGKSYLAKAVATEA-------DSTFFSISSS 200 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~---~~~~~iLl~GppGtGKT~la~aia~~l-------~~~~~~v~~~ 200 (436)
.+++++|++.+|+.|.+++..+.........+. ....+++|+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999998876543322222222 233689999999999999999999874 2478889999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
++.+.++|+....+..+|..+. ++||||||+|.|.... ........+..|+..|+.. ...+++|+++...
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred HhhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 9999999999888888888764 4699999999986422 2233456778888888753 3445555554322
Q ss_pred -----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc---------CCCCHHHHHHHHHH
Q 042771 281 -----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT---------EGFSGSDISVCVKD 346 (436)
Q Consensus 281 -----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t---------~g~s~~dl~~l~~~ 346 (436)
..++|++++||+..+.|+.++.+++.+|++.++......++++.+..|+... ..-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2468899999998999999999999999999998877778888888876532 12367888888888
Q ss_pred HhhhHHHhhh
Q 042771 347 VLFEPVRKTQ 356 (436)
Q Consensus 347 a~~~a~~~~~ 356 (436)
|......+..
T Consensus 234 a~~~~~~r~~ 243 (261)
T TIGR02881 234 AIRRQAVRLL 243 (261)
T ss_pred HHHHHHHHHh
Confidence 8876655554
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.91 E-value=2e-23 Score=184.04 Aligned_cols=196 Identities=22% Similarity=0.295 Sum_probs=135.5
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.....|.+|+|++||++++..+.-++..... ...+..++|||||||+||||||+.+|++++.++..+++..+.
T Consensus 15 ~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~-------r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~ 87 (233)
T PF05496_consen 15 AERLRPKSLDEFIGQEHLKGNLKILIRAAKK-------RGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIE 87 (233)
T ss_dssp HHHTS-SSCCCS-S-HHHHHHHHHHHHHHHC-------TTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--
T ss_pred HHhcCCCCHHHccCcHHHHhhhHHHHHHHHh-------cCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhh
Confidence 3455778999999999999998876654322 123346899999999999999999999999999998876542
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---------------CC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH---------------ND 268 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~~ 268 (436)
. ...+..++.... ...||||||||.| ...+...|+..|++..- +-
T Consensus 88 k------~~dl~~il~~l~--~~~ILFIDEIHRl------------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 88 K------AGDLAAILTNLK--EGDILFIDEIHRL------------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp S------CHHHHHHHHT----TT-EEEECTCCC--------------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred h------HHHHHHHHHhcC--CCcEEEEechhhc------------cHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 1 122333343333 3469999999998 34456677888875421 11
Q ss_pred CceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 269 QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 269 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
+++.+|++|+....+.+.|++||..+..+..++.++..+|+..........++++...+||..+.| +++--..+++.+
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rv 225 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRV 225 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHH
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 357789999999999999999999888999999999999999988888888899999999999998 676666665544
No 41
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.91 E-value=9.1e-23 Score=192.44 Aligned_cols=214 Identities=17% Similarity=0.220 Sum_probs=166.9
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC-C---CCCCcceEEecCCcchHHHHHHHHHHHcC-------CceEEEeccch
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG-K---RQPWRAFLLYGPPGTGKSYLAKAVATEAD-------STFFSISSSDL 202 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~---~~~~~~iLl~GppGtGKT~la~aia~~l~-------~~~~~v~~~~l 202 (436)
+++|++++|+.|.+++.+. ..++.+.. + ..+..+++|+||||||||++|+++|+.+. .+++.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~-~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALL-LVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHH-HHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 5899999999999987763 23333332 2 22446899999999999999999998762 37999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC--
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-- 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-- 280 (436)
.+.+.|.+...+..+|+.+. ++||||||++.|.+.+. .......+++.|+..|+.. ..+++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~---~~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~~ 172 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN---ERDYGQEAIEILLQVMENQ---RDDLVVILAGYKDRM 172 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC---ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHHH
Confidence 88888888777888887763 46999999999864332 2335567788888888743 3557777776543
Q ss_pred C---cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHhhh
Q 042771 281 Y---ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK-------TEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 281 ~---~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~-------t~g~s~~dl~~l~~~a~~~ 350 (436)
+ .++|++++||+..|.||.++.+++..|+.+++......+++..+..+..+ .+--+++.+++++..+...
T Consensus 173 ~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 173 DSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLR 252 (284)
T ss_pred HHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHH
Confidence 2 35899999999999999999999999999999887777788888887766 3344789999999999988
Q ss_pred HHHhhhh
Q 042771 351 PVRKTQD 357 (436)
Q Consensus 351 a~~~~~~ 357 (436)
...|...
T Consensus 253 ~~~r~~~ 259 (284)
T TIGR02880 253 QANRLFC 259 (284)
T ss_pred HHHHHhc
Confidence 7777653
No 42
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-22 Score=200.47 Aligned_cols=239 Identities=26% Similarity=0.378 Sum_probs=188.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN 245 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~ 245 (436)
...+||+|+||||||++++++|+++|.+++.++|.++.......++..+...|..++...|+||||-++|.+......
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-- 508 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-- 508 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC--
Confidence 357999999999999999999999999999999999999888899999999999999999999999999998754433
Q ss_pred CchHHHHHHHHHHHH--hhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChh
Q 042771 246 ESEASRRIKTELLVQ--MQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTES 323 (436)
Q Consensus 246 ~~~~~~~~~~~ll~~--l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~ 323 (436)
....+++..+-.. ++......+.++||++++..+.+++.+++-|...|.++.|+.++|.+||+.++...... .+.
T Consensus 509 --ged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v 585 (953)
T KOG0736|consen 509 --GEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDV 585 (953)
T ss_pred --chhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHH
Confidence 2233333333222 33444456789999999999999999999998999999999999999999999887765 678
Q ss_pred hHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCH
Q 042771 324 DFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISK 403 (436)
Q Consensus 324 ~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~ 403 (436)
.+..++..+.||+.+|+..++...-..+..+..... .... .+....... -.....+++
T Consensus 586 ~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~----l~g~----------------~~~~~~~~~--~~~~~~l~~ 643 (953)
T KOG0736|consen 586 NLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKG----LAGG----------------LQEEDEGEL--CAAGFLLTE 643 (953)
T ss_pred HHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhc----cccc----------------chhcccccc--ccccceecH
Confidence 899999999999999999999888555544443211 0000 000000000 011167999
Q ss_pred HHHHHHHhhCC------------CCCCHHHHHHHHHHHHH
Q 042771 404 TDFDKVLARQR------------PTVSKSDLEVQERFTKE 431 (436)
Q Consensus 404 ~d~~~al~~~~------------ps~s~~~~~~y~~~~~~ 431 (436)
+||..|+.+.+ |.|+|+|++.+++.+.+
T Consensus 644 edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~e 683 (953)
T KOG0736|consen 644 EDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTE 683 (953)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHH
Confidence 99999998664 99999999999998865
No 43
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3.5e-22 Score=197.89 Aligned_cols=249 Identities=22% Similarity=0.296 Sum_probs=195.0
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhhhhc
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSKWMG 208 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~~~g 208 (436)
.|++-...+|+........| .....+|||+||+|||||.|++++++++ .+++..++|+.+......
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 55666677777666544433 2233689999999999999999999986 467888999999887777
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEccccccccCCC-CCCCchHHHHHHHHHH-HHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 209 ESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG-EGNESEASRRIKTELL-VQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 209 ~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~-~~~~~~~~~~~~~~ll-~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
...+.+..+|..+.++.|+||++|++|.|++..+ .+++.+.....+..++ ..+..+...+..+.||++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 8889999999999999999999999999998332 2223334444455555 3444444556668999999999999999
Q ss_pred HHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhh
Q 042771 287 IRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKT 364 (436)
Q Consensus 287 l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~ 364 (436)
|.+ +|+.++.++.|+..+|.+||+..+.+........+++.++..|+||.+.|+..++.+|...++.+...
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------- 630 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------- 630 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc-------
Confidence 988 89999999999999999999999988776667778888999999999999999999999999844321
Q ss_pred cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC------------CCHHHHHHHHHHH
Q 042771 365 SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT------------VSKSDLEVQERFT 429 (436)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps------------~s~~~~~~y~~~~ 429 (436)
..+..+|.++|.++++.+.|. +.|+++....+..
T Consensus 631 -------------------------------~~~klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~~~k 676 (952)
T KOG0735|consen 631 -------------------------------NGPKLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLFEAK 676 (952)
T ss_pred -------------------------------cCcccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHHHHH
Confidence 112468999999998776543 5667666655443
No 44
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.89 E-value=5.6e-22 Score=186.24 Aligned_cols=188 Identities=23% Similarity=0.375 Sum_probs=143.5
Q ss_pred ccccCCCCccccccCcHHHHH---HHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 123 IIREKPNVKWNDVAGLESAKQ---ALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~---~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
+..+-.|.++++++|++.+.- -|..++.. ....+++|||||||||||||+.||+.++..|..+++
T Consensus 14 LA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sA 81 (436)
T COG2256 14 LAERLRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSA 81 (436)
T ss_pred hHHHhCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecc
Confidence 344556889999999998863 45554432 233689999999999999999999999999999998
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARES----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
.. ...+.++.+++.++.. ...||||||||.+.... +..||-.++ .+.+++|+
T Consensus 82 v~-------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~Q------------QD~lLp~vE-----~G~iilIG 137 (436)
T COG2256 82 VT-------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQ------------QDALLPHVE-----NGTIILIG 137 (436)
T ss_pred cc-------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhh------------hhhhhhhhc-----CCeEEEEe
Confidence 64 2346678888888543 35799999999984332 456777776 34566666
Q ss_pred cc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC--CC-----CCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 276 AT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG--DT-----PHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 276 tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~--~~-----~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
+| |+...++++|+||+ .++.+.+.+.++..+++...+. .. ...++++.++.|+..++| |.+.+++.
T Consensus 138 ATTENPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~G----D~R~aLN~ 212 (436)
T COG2256 138 ATTENPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNG----DARRALNL 212 (436)
T ss_pred ccCCCCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCc----hHHHHHHH
Confidence 55 66689999999999 6899999999999999988432 22 233678899999999998 88877766
Q ss_pred HhhhH
Q 042771 347 VLFEP 351 (436)
Q Consensus 347 a~~~a 351 (436)
.-+..
T Consensus 213 LE~~~ 217 (436)
T COG2256 213 LELAA 217 (436)
T ss_pred HHHHH
Confidence 55443
No 45
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=7.8e-23 Score=185.89 Aligned_cols=183 Identities=31% Similarity=0.442 Sum_probs=150.6
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcC-C-CCCCcceEEecCCcchHHHHHHHHHHHcC---------CceEEEec
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTG-K-RQPWRAFLLYGPPGTGKSYLAKAVATEAD---------STFFSISS 199 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~-~~~~~~iLl~GppGtGKT~la~aia~~l~---------~~~~~v~~ 199 (436)
-|+.++--..+|+.|..++...+...+.-.. . ..-.+-+||+||||||||+|++++|+.+. ..++.+++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 4788888899999999988766554433222 1 11225699999999999999999999873 46889999
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhc---C--CeEEEEccccccccCCC---CCCCchHHHHHHHHHHHHhhcCCCCCCce
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARES---A--PSIIFIDEIDSLCGQRG---EGNESEASRRIKTELLVQMQGVGHNDQKV 271 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~---~--p~il~iDeid~l~~~~~---~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 271 (436)
..+.++|.+++.+.+..+|+.+... . -..++|||++.|...|. +.++....-++.+.+|.+||.+ ...++|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl-K~~~Nv 298 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL-KRYPNV 298 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh-ccCCCE
Confidence 9999999999999999999988653 1 23667999999987762 2334456678899999999988 456789
Q ss_pred EEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC
Q 042771 272 LVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG 314 (436)
Q Consensus 272 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~ 314 (436)
++++|+|-.+.+|.++..|-+.+.++.+|+...+..|++.++.
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998775
No 46
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.7e-22 Score=184.77 Aligned_cols=215 Identities=27% Similarity=0.429 Sum_probs=167.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
..+.-.|++||-+..+..+|..+...--. -+....|.++||||||||||||++|+-+|...|..+-.+...++...
T Consensus 348 ~~gk~pl~~ViL~psLe~Rie~lA~aTaN----TK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl 423 (630)
T KOG0742|consen 348 SRGKDPLEGVILHPSLEKRIEDLAIATAN----TKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL 423 (630)
T ss_pred hcCCCCcCCeecCHHHHHHHHHHHHHhcc----cccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc
Confidence 34556699999999999999887643211 11134667999999999999999999999999999888888776432
Q ss_pred hhchHHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc
Q 042771 206 WMGESEKLVSSLFQMARESA-PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 284 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~ 284 (436)
..+.-..+..+|++++... .-+|||||+|.++-.+....-++..+..++.||-.-- .....++++.+||.|.++|
T Consensus 424 -G~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 424 -GAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred -chHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchh
Confidence 2244566899999997764 4588999999998887665556667777777765432 3456788999999999999
Q ss_pred HHHHhhccceEEcCCCCHHHHHHHHHHHhCCCC----------------------C----CCChhhHHHHHHHcCCCCHH
Q 042771 285 QAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTP----------------------H----NLTESDFESLARKTEGFSGS 338 (436)
Q Consensus 285 ~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~----------------------~----~~~~~~~~~la~~t~g~s~~ 338 (436)
.++-.||+.+++||+|..++|..+|..|+.++- + ..++..+.+.|..|.||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 999999999999999999999999998885321 1 12345677888999999999
Q ss_pred HHHHHHHHHh
Q 042771 339 DISVCVKDVL 348 (436)
Q Consensus 339 dl~~l~~~a~ 348 (436)
+|..|+-..-
T Consensus 580 EiakLva~vQ 589 (630)
T KOG0742|consen 580 EIAKLVASVQ 589 (630)
T ss_pred HHHHHHHHHH
Confidence 9998875443
No 47
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.7e-21 Score=173.49 Aligned_cols=237 Identities=20% Similarity=0.233 Sum_probs=174.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
...+..|+|++|++.+|++|.-++.-...+ .....|+||+||||.||||||..+|+++|.++...++..+.
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~le-- 89 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALE-- 89 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccccccc--
Confidence 456789999999999999999888654332 23446999999999999999999999999999888876653
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC---------------CCCCc
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---------------HNDQK 270 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~~~~ 270 (436)
...-+..++.....+ +|+||||||.|.+. +-..|.-.|+++. -.-++
T Consensus 90 ----K~gDlaaiLt~Le~~--DVLFIDEIHrl~~~------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 90 ----KPGDLAAILTNLEEG--DVLFIDEIHRLSPA------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred ----ChhhHHHHHhcCCcC--CeEEEehhhhcChh------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 223344555555544 59999999998432 2333444555331 12245
Q ss_pred eEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 271 VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
+.+|++|.....+...|+.||.....+..++.++...|+..........++++....||+.+.| +++--..|+++.--.
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDf 230 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDF 230 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHH
Confidence 7789999999999999999999999999999999999999988888888899999999999998 565544554443322
Q ss_pred HHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC---CCCCHHHHHHHHH
Q 042771 351 PVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR---PTVSKSDLEVQER 427 (436)
Q Consensus 351 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~---ps~s~~~~~~y~~ 427 (436)
+.-+.. ..|+.+-...|+..+. --+.+-|.+.+..
T Consensus 231 a~V~~~------------------------------------------~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~ 268 (332)
T COG2255 231 AQVKGD------------------------------------------GDIDRDIADKALKMLDVDELGLDEIDRKYLRA 268 (332)
T ss_pred HHHhcC------------------------------------------CcccHHHHHHHHHHhCcccccccHHHHHHHHH
Confidence 222111 3566666666666654 2255667777777
Q ss_pred HHHHh
Q 042771 428 FTKEF 432 (436)
Q Consensus 428 ~~~~~ 432 (436)
..++|
T Consensus 269 li~~f 273 (332)
T COG2255 269 LIEQF 273 (332)
T ss_pred HHHHh
Confidence 77777
No 48
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.89 E-value=4.2e-22 Score=166.81 Aligned_cols=130 Identities=40% Similarity=0.691 Sum_probs=118.3
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcC-CeEEEEccccccccCCCCCCCc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESA-PSIIFIDEIDSLCGQRGEGNES 247 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~-p~il~iDeid~l~~~~~~~~~~ 247 (436)
|||+||||||||++|+.+|+.++.+++.+++.++.+.+.+.....+..+|..+.... |+||||||+|.+.+.. .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 699999999999999999999999999999999998889999999999999998887 9999999999999887 44467
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHH-hhccceEEcCC
Q 042771 248 EASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIR-RRFDKRIYIPL 299 (436)
Q Consensus 248 ~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~-~Rf~~~i~~~~ 299 (436)
.....+...|+..++.......+++||+|||.++.++++++ +||+..+++|.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 77888999999999988666677999999999999999999 99999998864
No 49
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.88 E-value=8.2e-21 Score=183.82 Aligned_cols=201 Identities=20% Similarity=0.246 Sum_probs=149.3
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
..+..+.+|++++|+++.++.|..++..... ...++.++||+||||||||++|+++|++++..+..++...+.
T Consensus 16 ~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~ 88 (328)
T PRK00080 16 ERSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALE 88 (328)
T ss_pred hhhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccccc
Confidence 3456677999999999999999887753211 124457899999999999999999999999988777655332
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC---------------CCC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---------------HND 268 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~~ 268 (436)
. ...+..++... ..++||||||||.+... ..+.|...|+... ...
T Consensus 89 ~------~~~l~~~l~~l--~~~~vl~IDEi~~l~~~------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l 148 (328)
T PRK00080 89 K------PGDLAAILTNL--EEGDVLFIDEIHRLSPV------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDL 148 (328)
T ss_pred C------hHHHHHHHHhc--ccCCEEEEecHhhcchH------------HHHHHHHHHHhcceeeeeccCccccceeecC
Confidence 1 12233444433 34579999999988421 1122333333211 011
Q ss_pred CceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 269 QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 269 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
+.+.+|++|+.+..+++++++||...+.++.|+.+++.+|++.........++++.+..|+..+.| +++.+..+++.+.
T Consensus 149 ~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~ 227 (328)
T PRK00080 149 PPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVR 227 (328)
T ss_pred CCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHH
Confidence 346788999999999999999998899999999999999999998888888899999999999998 4567777777665
Q ss_pred hhHH
Q 042771 349 FEPV 352 (436)
Q Consensus 349 ~~a~ 352 (436)
..+.
T Consensus 228 ~~a~ 231 (328)
T PRK00080 228 DFAQ 231 (328)
T ss_pred HHHH
Confidence 5443
No 50
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=9.9e-22 Score=187.66 Aligned_cols=205 Identities=24% Similarity=0.370 Sum_probs=162.2
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCC-cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPW-RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWM 207 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~-~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~ 207 (436)
+.+|+.|+-..+.|+.|.+-+..++...++++....+| +|.|||||||||||+++.|+|+.++..++.++.++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 37899999999999999999999999999999877777 899999999999999999999999999999998776432
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC-----c-hHHHHHHHHHHHHhhcCCCCC-CceEEEeccCCC
Q 042771 208 GESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE-----S-EASRRIKTELLVQMQGVGHND-QKVLVLAATNTP 280 (436)
Q Consensus 208 g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-----~-~~~~~~~~~ll~~l~~~~~~~-~~v~vi~ttn~~ 280 (436)
..++.++...... +||+|+|||+-+..+..... . ....-.++.||+.+||+.... .--+||+|||..
T Consensus 275 ----~dLr~LL~~t~~k--SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~ 348 (457)
T KOG0743|consen 275 ----SDLRHLLLATPNK--SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHK 348 (457)
T ss_pred ----HHHHHHHHhCCCC--cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCCh
Confidence 2277777665544 79999999986543322111 1 123456788999999996554 457889999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCC-CCCChhhHHHHHHHcCCCCHHHHHHH
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTP-HNLTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~-~~~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
+.|||||+| |++.+|+++..+.+..+.++.+++.... +.+- .++..+...+. .|++|+...
T Consensus 349 EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~-~eie~l~~~~~-~tPA~V~e~ 412 (457)
T KOG0743|consen 349 EKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLF-DEIERLIEETE-VTPAQVAEE 412 (457)
T ss_pred hhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchh-HHHHHHhhcCc-cCHHHHHHH
Confidence 999999999 9999999999999999999999997643 3322 23344444443 589997644
No 51
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.87 E-value=3.8e-20 Score=177.77 Aligned_cols=193 Identities=20% Similarity=0.258 Sum_probs=141.7
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchH
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGES 210 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~ 210 (436)
+|++++|++++++.|..++..... ....+.+++|+||||||||+||+++|++++..+..+....+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 699999999999999988753221 1233467999999999999999999999998877666543221
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC---------------CCCCceEEEe
Q 042771 211 EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---------------HNDQKVLVLA 275 (436)
Q Consensus 211 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------------~~~~~v~vi~ 275 (436)
...+...+... ..+.+|||||+|.+... ....|+..++... ...+.+.+|+
T Consensus 69 ~~~l~~~l~~~--~~~~vl~iDEi~~l~~~------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 69 PGDLAAILTNL--EEGDVLFIDEIHRLSPA------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred chhHHHHHHhc--ccCCEEEEehHhhhCHH------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 11122222222 34579999999988422 1223333333221 1123477889
Q ss_pred ccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 276 ATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 276 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
+||.+..+++++++||...+.+++|+.++..++++.........++++.+..|++.+.|. ++.+..+++.+...+
T Consensus 135 ~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a 209 (305)
T TIGR00635 135 ATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFA 209 (305)
T ss_pred ecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHH
Confidence 999999999999999988899999999999999999888777788999999999999885 466677777665443
No 52
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.86 E-value=2e-20 Score=190.63 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=150.5
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+.++|.+.+|++|+|++.+++.|..++.. .+..+.+||+||+|||||++++.+|+.+++.
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~P 72 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQP 72 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCC
Confidence 3467789999999999999999999987743 2334678999999999999999999998753
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.++...- ..-..++.+.+.+. .....|+||||+|.|. ..
T Consensus 73 CG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~ 134 (830)
T PRK07003 73 CGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NH 134 (830)
T ss_pred CcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HH
Confidence 233332210 11123444444443 2345699999999983 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.||+.|+. ...++.||++||.+..|.+.|+||| ..+.|..++.++...+|+..+....+.++++.+..|++.+
T Consensus 135 A~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A 210 (830)
T PRK07003 135 AFNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAA 210 (830)
T ss_pred HHHHHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46788888884 4557889999999999999999999 6999999999999999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 042771 333 EGFSGSDISVCVKDVLF 349 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~ 349 (436)
+| +.++..+++.++..
T Consensus 211 ~G-smRdALsLLdQAia 226 (830)
T PRK07003 211 QG-SMRDALSLTDQAIA 226 (830)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 98 55666666666553
No 53
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.6e-20 Score=189.03 Aligned_cols=195 Identities=17% Similarity=0.241 Sum_probs=150.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.+.+|+||+|++.+++.|..++... +.++.+||+||+|+|||++|+.+|+.+++.
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g 72 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG 72 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc
Confidence 34667899999999999999999999887542 334678999999999999999999998762
Q ss_pred ----------------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCc
Q 042771 194 ----------------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNES 247 (436)
Q Consensus 194 ----------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~ 247 (436)
++.++...- ..-..++.+.+.+ ..+...|+||||+|.|.
T Consensus 73 ~~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------- 137 (700)
T PRK12323 73 ITAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------- 137 (700)
T ss_pred CCCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcC---------
Confidence 222222210 1122334444433 23455799999999983
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHH
Q 042771 248 EASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFES 327 (436)
Q Consensus 248 ~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~ 327 (436)
....+.||+.|+. ...+++||++||.+..|.+.++||| ..+.|..++.++..+.++..+......++++.+..
T Consensus 138 ---~~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~ 210 (700)
T PRK12323 138 ---NHAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRL 210 (700)
T ss_pred ---HHHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3447788888884 4567889999999999999999999 68999999999999999988877777778888999
Q ss_pred HHHHcCCCCHHHHHHHHHHHhh
Q 042771 328 LARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 328 la~~t~g~s~~dl~~l~~~a~~ 349 (436)
|++.++| +.++..+++.+++.
T Consensus 211 IA~~A~G-s~RdALsLLdQaia 231 (700)
T PRK12323 211 LAQAAQG-SMRDALSLTDQAIA 231 (700)
T ss_pred HHHHcCC-CHHHHHHHHHHHHH
Confidence 9999987 67777777766553
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.86 E-value=1.4e-20 Score=185.20 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=149.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.+.+|+||+|++.+.+.|..++... ..++.+||+||+|||||++|+.+|+.+++.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p 74 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP 74 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc
Confidence 34667889999999999999999998877542 233569999999999999999999998763
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.+++..- ..-..++.+.+.+ ..+...|+||||+|.|. ..
T Consensus 75 Cg~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls------------~~ 136 (484)
T PRK14956 75 CNECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLT------------DQ 136 (484)
T ss_pred cCCCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcC------------HH
Confidence 233332110 0112334433333 23455799999999983 34
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
.++.||..++. +...+++|++|+.++.+.+++++|| ..+.|..++.++....++..+......++++.+..|++.+
T Consensus 137 A~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S 212 (484)
T PRK14956 137 SFNALLKTLEE---PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKG 212 (484)
T ss_pred HHHHHHHHhhc---CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 57888888874 4567888889999999999999999 5888999999999999999988878888999999999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 042771 333 EGFSGSDISVCVKDVL 348 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~ 348 (436)
+| +.++.-.++..+.
T Consensus 213 ~G-d~RdAL~lLeq~i 227 (484)
T PRK14956 213 DG-SVRDMLSFMEQAI 227 (484)
T ss_pred CC-hHHHHHHHHHHHH
Confidence 98 5667666776654
No 55
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.85 E-value=4.6e-20 Score=195.81 Aligned_cols=258 Identities=19% Similarity=0.295 Sum_probs=186.5
Q ss_pred HhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----
Q 042771 116 RAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----- 190 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----- 190 (436)
.......+.....+-++++++|.++....+.+.+.. ....+++|+||||||||++|+++|+.+
T Consensus 165 l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~ 232 (731)
T TIGR02639 165 LEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKV 232 (731)
T ss_pred HHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 334444455555667899999999988887776533 233689999999999999999999987
Q ss_pred -----CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 191 -----DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 191 -----~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
+..++.+++..+. .+|.|+.+..++.+|+.+....++||||||+|.|++.+..... ...+.+.|...+.
T Consensus 233 p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---~~~~~~~L~~~l~- 308 (731)
T TIGR02639 233 PENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---SMDASNLLKPALS- 308 (731)
T ss_pred chhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc---cHHHHHHHHHHHh-
Confidence 7789999988886 4788999999999999998878899999999999876532111 1122333444443
Q ss_pred CCCCCCceEEEeccCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHcCC
Q 042771 264 VGHNDQKVLVLAATNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKTEG 334 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t~g 334 (436)
.+.+.+|++||.. ...|+++.|||. .|.++.|+.+++..||+..... ....++++.+..++..+..
T Consensus 309 ----~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 309 ----SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred ----CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 4568889988863 467999999996 7999999999999999966542 3456789999999998877
Q ss_pred CCHH-----HHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHH
Q 042771 335 FSGS-----DISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKV 409 (436)
Q Consensus 335 ~s~~-----dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~a 409 (436)
|-+. ---.++++|+... +.... ......|+.+|+..+
T Consensus 384 yi~~r~~P~kai~lld~a~a~~--~~~~~------------------------------------~~~~~~v~~~~i~~~ 425 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASF--RLRPK------------------------------------AKKKANVSVKDIENV 425 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhh--hcCcc------------------------------------cccccccCHHHHHHH
Confidence 7543 2245555554321 11000 000146999999999
Q ss_pred HhhCC--C--CCCHHHHHHHHHHHHHh
Q 042771 410 LARQR--P--TVSKSDLEVQERFTKEF 432 (436)
Q Consensus 410 l~~~~--p--s~s~~~~~~y~~~~~~~ 432 (436)
+.... | .+++++..++....+.+
T Consensus 426 i~~~tgiP~~~~~~~~~~~l~~l~~~l 452 (731)
T TIGR02639 426 VAKMAHIPVKTVSVDDREKLKNLEKNL 452 (731)
T ss_pred HHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 88763 3 45677777777666554
No 56
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=9.3e-20 Score=182.37 Aligned_cols=188 Identities=15% Similarity=0.198 Sum_probs=140.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC----------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---------- 192 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---------- 192 (436)
+..++.|.+|+|++|++.+++.|...+... ..++++||+|||||||||+|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 456789999999999999999998876542 33467999999999999999999999865
Q ss_pred --------------ceEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHH
Q 042771 193 --------------TFFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIK 254 (436)
Q Consensus 193 --------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 254 (436)
.++.++++.-. .-..++.+.+.+.. ....||||||+|.|. ...+
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~~------gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~ 134 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASNR------GIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAF 134 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcccC------CHHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHH
Confidence 34445443111 11234444444332 245699999999873 2345
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 255 TELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 255 ~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
+.|+..++. .++.+++|++|+.+..+++++++|| ..+.|..++.++...+++..+...+..++++.+..|+..+.|
T Consensus 135 ~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G 210 (472)
T PRK14962 135 NALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG 210 (472)
T ss_pred HHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC
Confidence 677877774 3456777777777889999999999 489999999999999999988877778899999999999876
Q ss_pred CCHHHHHHHH
Q 042771 335 FSGSDISVCV 344 (436)
Q Consensus 335 ~s~~dl~~l~ 344 (436)
..+.+...+
T Consensus 211 -dlR~aln~L 219 (472)
T PRK14962 211 -GLRDALTML 219 (472)
T ss_pred -CHHHHHHHH
Confidence 333433333
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.4e-19 Score=181.10 Aligned_cols=195 Identities=17% Similarity=0.225 Sum_probs=149.8
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC--------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-------- 192 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-------- 192 (436)
..+..++.+.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+++
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~p 71 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTP 71 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCC
Confidence 3466788999999999999999999988753 233478899999999999999999999876
Q ss_pred ----------------ceEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 193 ----------------TFFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 193 ----------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
.++.++++.-. .-..++.+...+ ..+...|+||||+|.|. ..
T Consensus 72 Cg~C~sC~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS------------~~ 133 (702)
T PRK14960 72 CEVCATCKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS------------TH 133 (702)
T ss_pred CccCHHHHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcC------------HH
Confidence 23333332111 122344444433 22355799999999883 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.++. ....+.+|++|+.+..+.+.+++|| ..+.|..++.++....++..+......+++..+..|++.+
T Consensus 134 A~NALLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S 209 (702)
T PRK14960 134 SFNALLKTLEE---PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESA 209 (702)
T ss_pred HHHHHHHHHhc---CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46778888884 3456777888888999999999999 6999999999999999999998888888999999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 042771 333 EGFSGSDISVCVKDVLF 349 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~ 349 (436)
.| +.+++..++..++.
T Consensus 210 ~G-dLRdALnLLDQaIa 225 (702)
T PRK14960 210 QG-SLRDALSLTDQAIA 225 (702)
T ss_pred CC-CHHHHHHHHHHHHH
Confidence 87 66677666666553
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=3.7e-19 Score=184.73 Aligned_cols=193 Identities=19% Similarity=0.235 Sum_probs=147.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce-------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF------- 194 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~------- 194 (436)
.+..++.+.+|++|+|++.+++.|+.++... +.++.+||+||||||||++|+++|+.+++..
T Consensus 5 ~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pC 73 (944)
T PRK14949 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPC 73 (944)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCC
Confidence 4567889999999999999999998877531 2335679999999999999999999987641
Q ss_pred -----------------EEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 195 -----------------FSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 195 -----------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
+.++...- ..-..++.+...+. .+...|+||||+|.| ....
T Consensus 74 g~C~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------T~eA 135 (944)
T PRK14949 74 GVCSSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------SRSS 135 (944)
T ss_pred CCchHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------------CHHH
Confidence 11111100 11122344443332 334569999999998 3456
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
++.||+.|+. +...+.+|++|+.+..|.+.+++|| ..+.|..++.++....|++.+......+++..+..|+..+.
T Consensus 136 qNALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7889999984 4566777778888899999999999 68999999999999999998877777788999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..++..++
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6677777776665
No 59
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.84 E-value=1.2e-18 Score=185.86 Aligned_cols=206 Identities=19% Similarity=0.247 Sum_probs=150.8
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh---------h
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV---------S 204 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~---------~ 204 (436)
+++|++.+++.+.+++....... .....++||+||||||||++|+++|+.++.+++.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58999999999999876532211 12234799999999999999999999999999999765432 2
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc------------CCCCCCceE
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG------------VGHNDQKVL 272 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~v~ 272 (436)
.|.|.....+...|..+....| ||||||||.+.+..+.. ..+.|+..++. .....++++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 4556666667777777766665 89999999997543211 13445554442 111235789
Q ss_pred EEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----------CCCCCCChhhHHHHHH-HcCCCCHHHHH
Q 042771 273 VLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----------DTPHNLTESDFESLAR-KTEGFSGSDIS 341 (436)
Q Consensus 273 vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----------~~~~~~~~~~~~~la~-~t~g~s~~dl~ 341 (436)
+|+|||.++.++++|++||. +|.|+.|+.+++..|++.++. .....++++.+..|++ .+..+..++|+
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EEEecCCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 99999999999999999995 899999999999999987751 1234578889999887 45556778888
Q ss_pred HHHHHHhhhHHHhh
Q 042771 342 VCVKDVLFEPVRKT 355 (436)
Q Consensus 342 ~l~~~a~~~a~~~~ 355 (436)
..+...+..+..+.
T Consensus 545 r~i~~~~~~~~~~~ 558 (775)
T TIGR00763 545 RQIEKICRKAAVKL 558 (775)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777665554443
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.1e-19 Score=183.67 Aligned_cols=195 Identities=17% Similarity=0.203 Sum_probs=150.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.|.+|+||+|++.+++.|..++... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p 72 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANP 72 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCccc
Confidence 35677899999999999999999999888541 334678999999999999999999998753
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.+++..- ..-..++.+.+.+. .+...|+||||+|.|. ..
T Consensus 73 Cg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~ 134 (509)
T PRK14958 73 CNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GH 134 (509)
T ss_pred CCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HH
Confidence 344443211 11122444444332 2345699999999983 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.|+. ++..+.+|++|+.+..+.+.+++|| ..+.|..++.++....++..+...+..+++..+..|++.+
T Consensus 135 a~naLLk~LEe---pp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s 210 (509)
T PRK14958 135 SFNALLKTLEE---PPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAA 210 (509)
T ss_pred HHHHHHHHHhc---cCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46788888884 3456777778888999999999999 6888999999999999988888888888999999999999
Q ss_pred CCCCHHHHHHHHHHHhh
Q 042771 333 EGFSGSDISVCVKDVLF 349 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~ 349 (436)
.| +.+++..++..++.
T Consensus 211 ~G-slR~al~lLdq~ia 226 (509)
T PRK14958 211 NG-SVRDALSLLDQSIA 226 (509)
T ss_pred CC-cHHHHHHHHHHHHh
Confidence 76 77788888776653
No 61
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.84 E-value=4.4e-19 Score=181.64 Aligned_cols=193 Identities=21% Similarity=0.277 Sum_probs=148.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.+++.
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC 73 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCC
Confidence 4667889999999999999999999877541 233568999999999999999999998763
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++..- ..-..++.+...+ ..+...|+||||+|.|. ...
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls------------~~a 135 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 135 (647)
T ss_pred CCCHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCC------------HHH
Confidence 223332210 0112234443333 23455799999999883 345
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.||+.|+. +.+.+.+|++|+.+..|.+.+++|| ..+.|..++.++....|...+......+++..+..|+..+.
T Consensus 136 ~NALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~ 211 (647)
T PRK07994 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAAD 211 (647)
T ss_pred HHHHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7889999984 4567778888888999999999999 69999999999999999998877677788899999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.++...++..++
T Consensus 212 G-s~R~Al~lldqai 225 (647)
T PRK07994 212 G-SMRDALSLTDQAI 225 (647)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6667777776655
No 62
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.83 E-value=1.7e-19 Score=166.72 Aligned_cols=234 Identities=19% Similarity=0.311 Sum_probs=159.8
Q ss_pred cccccCCCCccccccCcHHHHHH---HHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---eE
Q 042771 122 AIIREKPNVKWNDVAGLESAKQA---LQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST---FF 195 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~---L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~---~~ 195 (436)
.+..+-.+.+++|++|++++..+ |..++.. ....+++||||||||||+||+.++.....+ |+
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq------------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfv 194 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQ------------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFV 194 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCcchHHHHHHHc------------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEE
Confidence 45566688899999999987654 3322221 222589999999999999999999987655 77
Q ss_pred EEeccchhhhhhchHHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc
Q 042771 196 SISSSDLVSKWMGESEKLVSSLFQMARES-----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
.+++..- ...-++.+|+.++.. ...|||||||+.+.... +..||-.++ .+.
T Consensus 195 elSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQ------------QD~fLP~VE-----~G~ 250 (554)
T KOG2028|consen 195 ELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQ------------QDTFLPHVE-----NGD 250 (554)
T ss_pred EEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhh------------hhcccceec-----cCc
Confidence 7766542 235577788777543 45799999999874322 344555554 455
Q ss_pred eEEEecc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----------CCCC---CCChhhHHHHHHHcCCC
Q 042771 271 VLVLAAT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----------DTPH---NLTESDFESLARKTEGF 335 (436)
Q Consensus 271 v~vi~tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----------~~~~---~~~~~~~~~la~~t~g~ 335 (436)
+++|++| |+...|+.+|++|| .++.+.....+....||.+-.. ..+. .+++..++.|+..++|
T Consensus 251 I~lIGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdG- 328 (554)
T KOG2028|consen 251 ITLIGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDG- 328 (554)
T ss_pred eEEEecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCc-
Confidence 7777665 66689999999999 6888888999999999987432 1111 2566789999999998
Q ss_pred CHHHHHHHHHHHhhh---HHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhh
Q 042771 336 SGSDISVCVKDVLFE---PVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLAR 412 (436)
Q Consensus 336 s~~dl~~l~~~a~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~ 412 (436)
|-+..++..-+. ...|..+ .....++.+|+.+.+.+
T Consensus 329 ---DaR~aLN~Lems~~m~~tr~g~--------------------------------------~~~~~lSidDvke~lq~ 367 (554)
T KOG2028|consen 329 ---DARAALNALEMSLSMFCTRSGQ--------------------------------------SSRVLLSIDDVKEGLQR 367 (554)
T ss_pred ---hHHHHHHHHHHHHHHHHhhcCC--------------------------------------cccceecHHHHHHHHhh
Confidence 544444332222 1111110 01157999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC
Q 042771 413 QRPTVSKSDLEVQERFTKEFGE 434 (436)
Q Consensus 413 ~~ps~s~~~~~~y~~~~~~~~~ 434 (436)
-.--+....-++|..+..-+.+
T Consensus 368 s~~~YDr~Ge~HYntISA~HKS 389 (554)
T KOG2028|consen 368 SHILYDRAGEEHYNTISALHKS 389 (554)
T ss_pred ccceecccchhHHHHHHHHHHh
Confidence 7666666666777777665543
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=99.83 E-value=2e-19 Score=182.51 Aligned_cols=196 Identities=23% Similarity=0.353 Sum_probs=151.1
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.|+.++.|.+|++|+|++.+++.|..++.... ...+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 47789999999999999999999999885432 1233589999999999999999999999999999999887
Q ss_pred hhhhhhchHHHHHHHHHHHHHh------cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 202 LVSKWMGESEKLVSSLFQMARE------SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
.... ..+..+...+.. ..+.||+|||+|.|.... .......|+..++. .+..+|+
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~~-----~~~~iIl 135 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIKK-----AKQPIIL 135 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHHc-----CCCCEEE
Confidence 5432 223332222221 246799999999986421 11234556666652 2345677
Q ss_pred ccCCCCcccH-HHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 042771 276 ATNTPYALDQ-AIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 276 ttn~~~~l~~-~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
++|.++.+.+ .+++|+ ..+.|+.|+..+...+++..+...+..+++..+..|+..+.| |++.+++....
T Consensus 136 i~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq~ 205 (482)
T PRK04195 136 TANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQA 205 (482)
T ss_pred eccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHH
Confidence 8899988887 677777 689999999999999999999888888899999999999877 88888776654
No 64
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=4.7e-19 Score=173.43 Aligned_cols=193 Identities=18% Similarity=0.232 Sum_probs=144.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.|.+|++|+|++.+++.|...+... +.++.+||+||||+|||++|+++|+.+.+.
T Consensus 5 ~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc 73 (363)
T PRK14961 5 ILARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPC 73 (363)
T ss_pred HHHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4667889999999999999999998877531 234678999999999999999999998642
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++.. ...-..++.+.+.+.. ....|++|||+|.+. ...
T Consensus 74 ~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a 135 (363)
T PRK14961 74 RKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHS 135 (363)
T ss_pred CCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHH
Confidence 12222211 0112334555554432 234699999999872 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++. ++..+.+|++|+.+..+.+++++|| ..+.|++|+.++...+++..+...+..++++.+..|+..+.
T Consensus 136 ~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 136 FNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5678888874 3455667777788889999999999 58999999999999999998887777789999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +++++..++..+.
T Consensus 212 G-~~R~al~~l~~~~ 225 (363)
T PRK14961 212 G-SMRDALNLLEHAI 225 (363)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6666666666554
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=2.8e-19 Score=172.30 Aligned_cols=188 Identities=20% Similarity=0.224 Sum_probs=140.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-----ceEE
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-----TFFS 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-----~~~~ 196 (436)
.|..++.|.+|++++|++++++.|..++... ...++||+||||||||++|+++|+++.+ .++.
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 3678899999999999999999998876431 1246999999999999999999999732 3566
Q ss_pred EeccchhhhhhchHHHHHHHHHHHH-H------hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 197 ISSSDLVSKWMGESEKLVSSLFQMA-R------ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 197 v~~~~l~~~~~g~~~~~~~~~~~~a-~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
+++++..+. ..++...... . ...+.||+|||+|.|.. ...+.|+..++.. ..
T Consensus 70 ln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------~aq~aL~~~lE~~---~~ 128 (319)
T PLN03025 70 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------GAQQALRRTMEIY---SN 128 (319)
T ss_pred ecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------HHHHHHHHHHhcc---cC
Confidence 666654321 1222222111 1 12457999999999842 2245666667643 33
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
.+.+|.+||.+..+.+++++|| ..+.|+.|+.++....++..+...+..++++.+..|+..+.| |++.+++..
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln~L 201 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALNNL 201 (319)
T ss_pred CceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHH
Confidence 4557778888899999999999 589999999999999999999888888899999999999887 665555444
No 66
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=5.9e-19 Score=177.21 Aligned_cols=202 Identities=16% Similarity=0.187 Sum_probs=151.5
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE---
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI--- 197 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v--- 197 (436)
..+..++.|.+|+|++|++.+++.|..++.. .+.++++||+||||||||++|+++|+.+++.....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 4567789999999999999999999886643 23347899999999999999999999987632100
Q ss_pred ---------eccchhhh----------hhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHH
Q 042771 198 ---------SSSDLVSK----------WMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIK 254 (436)
Q Consensus 198 ---------~~~~l~~~----------~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 254 (436)
+|..+... ........++.+++.+.. ....|+||||+|.|. ...+
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~ 145 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAF 145 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHH
Confidence 01111000 001123445566655542 245699999999873 2346
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 255 TELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 255 ~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
+.|+..++. +...+++|++|+.+..+.+++++|| ..+.|..++.++...+++..+...+..++++.+..|+..+.|
T Consensus 146 naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G 221 (507)
T PRK06645 146 NALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG 221 (507)
T ss_pred HHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888874 4556777777888889999999999 589999999999999999999888888899999999999987
Q ss_pred CCHHHHHHHHHHHhhh
Q 042771 335 FSGSDISVCVKDVLFE 350 (436)
Q Consensus 335 ~s~~dl~~l~~~a~~~ 350 (436)
+.+++..+++.+...
T Consensus 222 -slR~al~~Ldkai~~ 236 (507)
T PRK06645 222 -SARDAVSILDQAASM 236 (507)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 778888888777543
No 67
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.82 E-value=8.7e-19 Score=159.12 Aligned_cols=188 Identities=18% Similarity=0.255 Sum_probs=144.6
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC------ce
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS------TF 194 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~------~~ 194 (436)
..|..++.+.+|++++|++.+++.|...+.. +-..++|||||||||||+.|+++|+++++ .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 4578899999999999999999999998854 22258999999999999999999999876 23
Q ss_pred EEEeccchhhhhhchHHHHHHHHHHHHHhc----------CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 195 FSISSSDLVSKWMGESEKLVSSLFQMARES----------APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 195 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----------~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
...++++..+..+.. ..+ .-|...... .+.|++|||.|.|. ...+..|...|+..
T Consensus 92 l~lnaSderGisvvr--~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt------------sdaq~aLrr~mE~~ 156 (346)
T KOG0989|consen 92 LELNASDERGISVVR--EKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT------------SDAQAALRRTMEDF 156 (346)
T ss_pred hhhcccccccccchh--hhh-cCHHHHhhccccccCCCCCcceEEEEechhhhh------------HHHHHHHHHHHhcc
Confidence 445565554432211 111 112222111 12699999999983 44578888888864
Q ss_pred CCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 042771 265 GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
...+.+|..||..+.+...+.+||. .+.|+....+.....|+.........+++..++.|+..++| ||+..
T Consensus 157 ---s~~trFiLIcnylsrii~pi~SRC~-KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~A 227 (346)
T KOG0989|consen 157 ---SRTTRFILICNYLSRIIRPLVSRCQ-KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRA 227 (346)
T ss_pred ---ccceEEEEEcCChhhCChHHHhhHH-HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHH
Confidence 4567889999999999999999995 67788888888888899999889999999999999999998 55544
No 68
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=6.9e-18 Score=168.02 Aligned_cols=214 Identities=18% Similarity=0.266 Sum_probs=155.5
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh---------
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV--------- 203 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~--------- 203 (436)
+|-.|++++|+++.+++.....+ +...+.-++|+||||+|||++++.||+.+|..|++++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr------gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR------GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc------ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 46789999999999988653222 223346799999999999999999999999999999865442
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHH-----HHHHHHhhcCCCCCCceEEEeccC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIK-----TELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~-----~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
..|+|.....+-+.+....-..| +++|||||.+....+.. ..++.-+++ ..|+...-++...-.+|+||||+|
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~qGD-PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN 562 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQGD-PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTAN 562 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCCCC-hHHHHHHhcChhhccchhhhccccccchhheEEEEecc
Confidence 24788888888888888877787 99999999997433221 222222222 123333224444556899999999
Q ss_pred CCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----------CCCCCChhhHHHHHHH-cCCCCH----HHHHHH
Q 042771 279 TPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----------TPHNLTESDFESLARK-TEGFSG----SDISVC 343 (436)
Q Consensus 279 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----------~~~~~~~~~~~~la~~-t~g~s~----~dl~~l 343 (436)
..+.++++|+.|+ .+|.++-+..++...|.+.++-. ....+++..+..|.+. |..--. ..|..+
T Consensus 563 ~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~iekI 641 (906)
T KOG2004|consen 563 VIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQIEKI 641 (906)
T ss_pred ccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9999999999999 69999999999999999988842 2345667666666543 322112 456678
Q ss_pred HHHHhhhHHHhh
Q 042771 344 VKDVLFEPVRKT 355 (436)
Q Consensus 344 ~~~a~~~a~~~~ 355 (436)
|+.+++.-++..
T Consensus 642 ~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 642 CRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHHhh
Confidence 888777666655
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=7.2e-19 Score=175.18 Aligned_cols=194 Identities=16% Similarity=0.173 Sum_probs=151.3
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC----------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---------- 192 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---------- 192 (436)
+..++.|.+|+||+|++.+++.|..++.. .+.++++||+||+|+||||+|+.+|+.+++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 45678999999999999999999877643 234478999999999999999999997643
Q ss_pred --------------ceEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHH
Q 042771 193 --------------TFFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIK 254 (436)
Q Consensus 193 --------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 254 (436)
.++.++++.-. .-..++.+.+.+.. ....|++|||+|.|. ...+
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~ 133 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAF 133 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHH
Confidence 23445443211 12335555555432 345699999999883 2346
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 255 TELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 255 ~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
+.|++.++. +++.+.+|++|+.+..+.+.+++|| ..+.|..++.++....+...+...+..++++.+..|++.+.|
T Consensus 134 NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G 209 (491)
T PRK14964 134 NALLKTLEE---PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG 209 (491)
T ss_pred HHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 788888884 4556777788888899999999999 589999999999999999999888888999999999999976
Q ss_pred CCHHHHHHHHHHHhhh
Q 042771 335 FSGSDISVCVKDVLFE 350 (436)
Q Consensus 335 ~s~~dl~~l~~~a~~~ 350 (436)
+.+++..++..+...
T Consensus 210 -slR~alslLdqli~y 224 (491)
T PRK14964 210 -SMRNALFLLEQAAIY 224 (491)
T ss_pred -CHHHHHHHHHHHHHh
Confidence 778888888777653
No 70
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.81 E-value=5.5e-19 Score=180.35 Aligned_cols=208 Identities=20% Similarity=0.267 Sum_probs=146.6
Q ss_pred hccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---------
Q 042771 120 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA--------- 190 (436)
Q Consensus 120 ~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l--------- 190 (436)
...+..++.+.+|++++|++...+.|...+.. ..+.++||+||||||||++|+++.+.+
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~ 119 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence 34566778889999999999999999875422 223689999999999999999998652
Q ss_pred -CCceEEEeccchh-------hhhhchHHHHH---HHHH----------HHHHhcCCeEEEEccccccccCCCCCCCchH
Q 042771 191 -DSTFFSISSSDLV-------SKWMGESEKLV---SSLF----------QMARESAPSIIFIDEIDSLCGQRGEGNESEA 249 (436)
Q Consensus 191 -~~~~~~v~~~~l~-------~~~~g~~~~~~---~~~~----------~~a~~~~p~il~iDeid~l~~~~~~~~~~~~ 249 (436)
+.+|+.++|.... ....+.....+ ...| ........++|||||++.|.
T Consensus 120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~----------- 188 (531)
T TIGR02902 120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH----------- 188 (531)
T ss_pred CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC-----------
Confidence 3678999986421 11111000000 0000 01112345799999999983
Q ss_pred HHHHHHHHHHHhhcCC--------------------------CCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHH
Q 042771 250 SRRIKTELLVQMQGVG--------------------------HNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 250 ~~~~~~~ll~~l~~~~--------------------------~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
...++.|+..|+... .+....+|++||+.|+.+++++++|| ..+.|+.++.+
T Consensus 189 -~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~e 266 (531)
T TIGR02902 189 -PVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDE 266 (531)
T ss_pred -HHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHH
Confidence 233555555554210 01122455667788999999999999 57889999999
Q ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHh
Q 042771 304 ARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 304 ~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~ 354 (436)
++..|++..+......++++.++.|+.++. +++++..+++.|+..+..+
T Consensus 267 ei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~ 315 (531)
T TIGR02902 267 EIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE 315 (531)
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC
Confidence 999999999988888889999999888775 7899999999988766443
No 71
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=7.3e-19 Score=179.19 Aligned_cols=196 Identities=18% Similarity=0.237 Sum_probs=152.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF------ 194 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~------ 194 (436)
..+..++.+.+|+||+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+++.-
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~-----------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p 72 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDE-----------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP 72 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC
Confidence 3567789999999999999999999988754 23447899999999999999999999986531
Q ss_pred ------------------EEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 195 ------------------FSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 195 ------------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
+.++... ......++.++..+. .....||||||+|.|. ..
T Consensus 73 Cg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls------------~~ 134 (709)
T PRK08691 73 CGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS------------KS 134 (709)
T ss_pred CcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC------------HH
Confidence 1222111 111234555555432 2345799999999872 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.|+. ....+.+|++|+.+..+.+.+++|| ..+.|+.++.++...+++..+...+..+++..+..|++.+
T Consensus 135 A~NALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A 210 (709)
T PRK08691 135 AFNAMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAA 210 (709)
T ss_pred HHHHHHHHHHh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh
Confidence 46788888884 3456778888889999999999999 6888999999999999999999888888999999999999
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 042771 333 EGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~~ 350 (436)
.| +.+++..++..+...
T Consensus 211 ~G-slRdAlnLLDqaia~ 227 (709)
T PRK08691 211 AG-SMRDALSLLDQAIAL 227 (709)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 76 788888888776653
No 72
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.8e-18 Score=174.49 Aligned_cols=192 Identities=18% Similarity=0.269 Sum_probs=144.1
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST--------- 193 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~--------- 193 (436)
+..++.+.+|+||+|++.+++.|..++... ..++.+||+||||||||++|+++|+.+.+.
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 456889999999999999999999887541 233567999999999999999999988541
Q ss_pred --------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHH
Q 042771 194 --------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKT 255 (436)
Q Consensus 194 --------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~ 255 (436)
++.+++..- ..-..++.+...+. ...+.||||||+|.+. ...++
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~n 134 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFN 134 (504)
T ss_pred ChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHH
Confidence 333443211 11233444433332 2356799999999762 34467
Q ss_pred HHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCC
Q 042771 256 ELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGF 335 (436)
Q Consensus 256 ~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~ 335 (436)
.|+..++. ....+++|++++.+..+.+.+++||. .+.|..|+.++...+++..+...+..+++..+..|+..+.|
T Consensus 135 aLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G- 209 (504)
T PRK14963 135 ALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG- 209 (504)
T ss_pred HHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 78888874 34557777788888999999999995 89999999999999999999887888899999999999987
Q ss_pred CHHHHHHHHHHHh
Q 042771 336 SGSDISVCVKDVL 348 (436)
Q Consensus 336 s~~dl~~l~~~a~ 348 (436)
+.+++..+++.+.
T Consensus 210 dlR~aln~Lekl~ 222 (504)
T PRK14963 210 AMRDAESLLERLL 222 (504)
T ss_pred CHHHHHHHHHHHH
Confidence 4555555555543
No 73
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.4e-18 Score=176.94 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=160.3
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEeccchhhh-----h
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDLVSK-----W 206 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l~~~-----~ 206 (436)
|+||+++...+..++.... .-+....+|..++||.||+|+|||.||+++|..+. ..++++++++++.+ .
T Consensus 493 ViGQd~AV~avs~aIrraR---aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrL 569 (786)
T COG0542 493 VIGQDEAVEAVSDAIRRAR---AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRL 569 (786)
T ss_pred eeChHHHHHHHHHHHHHHh---cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHH
Confidence 9999999999999986532 12333556778999999999999999999999996 78999999998654 2
Q ss_pred hchHHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEE
Q 042771 207 MGESEKL-----VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLV 273 (436)
Q Consensus 207 ~g~~~~~-----~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~v 273 (436)
.|....+ -..+.+..+..+.+||++|||++ +..++++.|++.||.-. ....+++|
T Consensus 570 IGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEK------------AHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiI 637 (786)
T COG0542 570 IGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEK------------AHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTII 637 (786)
T ss_pred hCCCCCCceeccccchhHhhhcCCCeEEEechhhh------------cCHHHHHHHHHHhcCCeeecCCCCEEecceeEE
Confidence 2332222 24677778888889999999997 36788999999998432 23447899
Q ss_pred EeccCCCC----------------------------cccHHHHhhccceEEcCCCCHHHHHHHHHHHhC---------CC
Q 042771 274 LAATNTPY----------------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG---------DT 316 (436)
Q Consensus 274 i~ttn~~~----------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~---------~~ 316 (436)
|+|||--. ...|+|+.|++.+|.|.+.+.+...+|+...+. +.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i 717 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGI 717 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99998651 224888999999999999999999999887664 33
Q ss_pred CCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhh
Q 042771 317 PHNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 317 ~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
...+++.....|+.... .|.++-|+.++++-....+.+..
T Consensus 718 ~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~~i 759 (786)
T COG0542 718 TLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLADEI 759 (786)
T ss_pred eEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHHHH
Confidence 45568888999998754 57788888888887777666543
No 74
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2e-18 Score=175.72 Aligned_cols=196 Identities=17% Similarity=0.241 Sum_probs=148.4
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.+.+|++|+|++.+++.|..++... +.++.+||+||||+|||++|+.+|+.+++.
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p 72 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATP 72 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 34667889999999999999999999887541 334678999999999999999999998763
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.+++.. ...-..++.+...+.. ....|+||||+|.|. ..
T Consensus 73 cg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~ 134 (527)
T PRK14969 73 CGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KS 134 (527)
T ss_pred CCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HH
Confidence 12222111 0112335555555432 244699999999883 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.++. ++..+.+|++|+.+..+.+.+++|| ..+.|..++.++....+...+......+++..+..|+..+
T Consensus 135 a~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s 210 (527)
T PRK14969 135 AFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAA 210 (527)
T ss_pred HHHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46788888885 4556777777888888988999999 6999999999999999988887767777889999999998
Q ss_pred CCCCHHHHHHHHHHHhhh
Q 042771 333 EGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~~ 350 (436)
.| +.+++..++..+...
T Consensus 211 ~G-slr~al~lldqai~~ 227 (527)
T PRK14969 211 AG-SMRDALSLLDQAIAY 227 (527)
T ss_pred CC-CHHHHHHHHHHHHHh
Confidence 76 667777777766543
No 75
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.6e-18 Score=177.28 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=149.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.+.+|++|+|++.+++.|..++... +.++.+||+||+|||||++|+++|+.+++.
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~ 72 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGG 72 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccC
Confidence 45677899999999999999999999887542 334678999999999999999999998752
Q ss_pred ----------------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCc
Q 042771 194 ----------------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNES 247 (436)
Q Consensus 194 ----------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~ 247 (436)
++.+++..- ..-..++.+.+.+.. +...|+||||+|.|.
T Consensus 73 ~~~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------- 137 (618)
T PRK14951 73 ITATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------- 137 (618)
T ss_pred CCCCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC---------
Confidence 222222110 112234555544432 234699999999983
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHH
Q 042771 248 EASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFES 327 (436)
Q Consensus 248 ~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~ 327 (436)
...++.|++.++. ....+.+|++|+.+..+.+.+++|| ..+.|..++.++....++..+...+..+++..+..
T Consensus 138 ---~~a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~ 210 (618)
T PRK14951 138 ---NTAFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRL 210 (618)
T ss_pred ---HHHHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 2336778888874 4556777778888889999999999 69999999999999999998888888889999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhh
Q 042771 328 LARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 328 la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
|++.+.| +.+++..++..+...
T Consensus 211 La~~s~G-slR~al~lLdq~ia~ 232 (618)
T PRK14951 211 LARAARG-SMRDALSLTDQAIAF 232 (618)
T ss_pred HHHHcCC-CHHHHHHHHHHHHHh
Confidence 9999987 677777777665543
No 76
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=3.3e-18 Score=173.75 Aligned_cols=191 Identities=20% Similarity=0.233 Sum_probs=142.0
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.+.+|+||+|++.+++.|..++... +..+++||+||+|||||++|+.+|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 4667889999999999999999999887541 223689999999999999999999998763
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.++...- ..+ ..++.+.+.+ ......||||||+|.|. ...
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~--~~I----d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a 135 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASN--RGI----DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REA 135 (624)
T ss_pred cccHHHHHHhcCCCCceEEEecccc--cCH----HHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHH
Confidence 333333210 011 1222222222 23345799999999983 334
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
++.|+..|+. ....+++|++|+.+..+.+.+++|| ..+.|+.++.++...+|+..+......+++..+..|++.+.
T Consensus 136 ~naLLk~LEE---P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~ 211 (624)
T PRK14959 136 FNALLKTLEE---PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAA 211 (624)
T ss_pred HHHHHHHhhc---cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888874 3456788888888889999999999 47899999999999999988877777789999999999998
Q ss_pred CCCHHHHHHHHHH
Q 042771 334 GFSGSDISVCVKD 346 (436)
Q Consensus 334 g~s~~dl~~l~~~ 346 (436)
| +.+++..++..
T Consensus 212 G-dlR~Al~lLeq 223 (624)
T PRK14959 212 G-SVRDSMSLLGQ 223 (624)
T ss_pred C-CHHHHHHHHHH
Confidence 7 34444444443
No 77
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.8e-17 Score=162.91 Aligned_cols=212 Identities=20% Similarity=0.243 Sum_probs=152.8
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh---------
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV--------- 203 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~--------- 203 (436)
.|-.|++++|+++.+++...... ......-++|+||||+|||+|++.||+.++..|++++...+.
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~------~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLT------KKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHh------ccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 35789999999999998654322 122336799999999999999999999999999999876543
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHH-----HHHHHHhhcCCCCCCceEEEeccC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIK-----TELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~-----~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
..|+|.....+-+-+..+....| +++|||||.|.+.-... ..++.-+++ +.|....-.+...-++|+||+|+|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD-PaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTAN 474 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD-PASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATAN 474 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC-hHHHHHhhcCHhhcCchhhccccCccchhheEEEeecC
Confidence 25788888888888888888888 99999999997654322 222222221 112222112333456899999999
Q ss_pred CCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----------CCCCCCChhhHHHHHHH-cCCCCH----HHHHHH
Q 042771 279 TPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----------DTPHNLTESDFESLARK-TEGFSG----SDISVC 343 (436)
Q Consensus 279 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----------~~~~~~~~~~~~~la~~-t~g~s~----~dl~~l 343 (436)
..+.++.+|+.|+ .+|.++-++.++..+|.+.++- .....++++.+..|.+. |.---. +.|..+
T Consensus 475 sl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ki 553 (782)
T COG0466 475 SLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIAKI 553 (782)
T ss_pred ccccCChHHhcce-eeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHHHH
Confidence 9999999999999 6999999999999999988873 23455678888887754 322222 455566
Q ss_pred HHHHhhhHHH
Q 042771 344 VKDVLFEPVR 353 (436)
Q Consensus 344 ~~~a~~~a~~ 353 (436)
|+.++..-+.
T Consensus 554 ~RK~~~~i~~ 563 (782)
T COG0466 554 CRKAAKKILL 563 (782)
T ss_pred HHHHHHHHHh
Confidence 6665554433
No 78
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.80 E-value=6.1e-18 Score=168.59 Aligned_cols=188 Identities=22% Similarity=0.350 Sum_probs=136.4
Q ss_pred ccccCCCCccccccCcHHHHHH---HHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 123 IIREKPNVKWNDVAGLESAKQA---LQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~---L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
+..++.+.+|+|++|++.+... |..++.. ....+++|+||||||||++|+++|+.++..|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 4456788999999999999665 7776633 123589999999999999999999999999999987
Q ss_pred cchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 200 SDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
.... ...++.+++.+. .....||||||+|.+. ....+.|+..++. +.+++|+
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~------------~~~q~~LL~~le~-----~~iilI~ 125 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN------------KAQQDALLPHVED-----GTITLIG 125 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC------------HHHHHHHHHHhhc-----CcEEEEE
Confidence 6432 123344444442 3356799999999873 2234556666652 3355555
Q ss_pred cc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCC--CC-CCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 276 AT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDT--PH-NLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 276 tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~--~~-~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
+| |....+++++++|| ..+.|+.++.++...+++..+... .. .+++..+..|++.+.| ..+.+..++..+.
T Consensus 126 att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~ 201 (413)
T PRK13342 126 ATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAA 201 (413)
T ss_pred eCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 43 44468999999999 689999999999999999877542 22 5788899999999865 4555555555543
No 79
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.6e-18 Score=171.76 Aligned_cols=193 Identities=20% Similarity=0.259 Sum_probs=144.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--------- 192 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--------- 192 (436)
.+..++.+.+|++|+|++.+++.|...+... +.++.+||+||+|||||++|+.+|+.+++
T Consensus 5 ~La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (546)
T PRK14957 5 ALARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPC 73 (546)
T ss_pred hHHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 4667889999999999999999999877541 33356899999999999999999998865
Q ss_pred ---------------ceEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 193 ---------------TFFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 193 ---------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
.++.++...- .| -..++.+.+.+ ..+...|+||||+|.|. ...
T Consensus 74 g~C~sC~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls------------~~a 135 (546)
T PRK14957 74 NKCENCVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS------------KQS 135 (546)
T ss_pred cccHHHHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc------------HHH
Confidence 2223332110 00 11233333333 23355699999999873 345
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..|+. ++..+.+|++|+.+..+.+.+++|| ..+.|..++.++....+...+...+..+++..+..|+..+.
T Consensus 136 ~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 136 FNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 7788888884 3455667777777888998999999 69999999999999999988877777889999999999997
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..++..+.
T Consensus 212 G-dlR~alnlLek~i 225 (546)
T PRK14957 212 G-SLRDALSLLDQAI 225 (546)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 6666666666544
No 80
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.1e-17 Score=176.71 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=145.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST--------- 193 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~--------- 193 (436)
+..++.+.+|++|+|++.+++.|..++.. .+..+.+||+||+|||||++|+.+|+.++|.
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 45789999999999999999999988753 1333568999999999999999999998752
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTE 256 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ 256 (436)
|+.++..... .+.....+...++.........|+||||+|.|. ....+.
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt------------~~a~Na 139 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMVT------------PQGFNA 139 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhcC------------HHHHHH
Confidence 2222221100 011112222222222233456799999999983 345788
Q ss_pred HHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCC
Q 042771 257 LLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFS 336 (436)
Q Consensus 257 ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s 336 (436)
||+.|+.. ...++||++|+.++.|.+.|++|| .++.|..++.++...+|...+......+++..+..|+..+.| +
T Consensus 140 LLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 140 LLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 99999853 456777777788888999999999 589999999999999999998877787889999999999977 6
Q ss_pred HHHHHHHHHHHh
Q 042771 337 GSDISVCVKDVL 348 (436)
Q Consensus 337 ~~dl~~l~~~a~ 348 (436)
.+++..+++..+
T Consensus 215 lR~Al~eLEKLi 226 (824)
T PRK07764 215 VRDSLSVLDQLL 226 (824)
T ss_pred HHHHHHHHHHHH
Confidence 667777766654
No 81
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.79 E-value=7.5e-18 Score=169.89 Aligned_cols=201 Identities=19% Similarity=0.376 Sum_probs=137.9
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe
Q 042771 127 KPNVKWNDVA-G--LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS 198 (436)
Q Consensus 127 ~~~~~~~dl~-G--~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~ 198 (436)
.+..+|++++ | ...+...+..+...+ .....+++||||||||||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3667899965 4 333555555544321 1233679999999999999999999987 56788999
Q ss_pred ccchhhhhhchHHH-HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 199 SSDLVSKWMGESEK-LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 199 ~~~l~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
+.++...+...... ....+....+ .+.+|+|||+|.+.++. .....|+..++.+... +..+||++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~----------~~~~~l~~~~n~l~~~-~~~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKYR--SVDVLLIDDIQFLAGKE----------RTQEEFFHTFNALHEA-GKQIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHh--cCCEEEEehhhhhcCCH----------HHHHHHHHHHHHHHHC-CCcEEEECC
Confidence 98887655433221 1122222222 45799999999885332 1123333333332122 234566666
Q ss_pred CCCCc---ccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 278 NTPYA---LDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 278 n~~~~---l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
..|.. +++++++||. ..+.+..|+.++|..|++..+...+..++++.++.|+..+.| +.+.|..+++.....+
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~ 330 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYA 330 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHH
Confidence 66644 6789999996 578999999999999999999887888899999999999986 7778877877766544
No 82
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.79 E-value=8.6e-18 Score=163.82 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=138.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-----CceEE
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-----STFFS 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-----~~~~~ 196 (436)
.|..++.|.+|++|+|++++++.|..++... ...+++|+||||||||++|+++++++. .+++.
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 4778889999999999999999999877531 113699999999999999999999874 34677
Q ss_pred Eeccchhhhh-------------hch-------HHHHHHHHHHHHHh-----cCCeEEEEccccccccCCCCCCCchHHH
Q 042771 197 ISSSDLVSKW-------------MGE-------SEKLVSSLFQMARE-----SAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 197 v~~~~l~~~~-------------~g~-------~~~~~~~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
+++.++.... .+. ....++.+...... ..+.+|+|||+|.+..
T Consensus 72 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~------------ 139 (337)
T PRK12402 72 FNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE------------ 139 (337)
T ss_pred echhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH------------
Confidence 8877653221 000 01223333322222 2346999999998731
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK 331 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~ 331 (436)
.....|...++.. .....+|++++.+..+.+.+++|+ ..+.+.+|+.++...+++..+......++++.+..|+..
T Consensus 140 ~~~~~L~~~le~~---~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 140 DAQQALRRIMEQY---SRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred HHHHHHHHHHHhc---cCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2234455556543 223445556666777888899998 588999999999999999998887878899999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 042771 332 TEGFSGSDISVCVKDV 347 (436)
Q Consensus 332 t~g~s~~dl~~l~~~a 347 (436)
+.| |++.+++..
T Consensus 216 ~~g----dlr~l~~~l 227 (337)
T PRK12402 216 AGG----DLRKAILTL 227 (337)
T ss_pred cCC----CHHHHHHHH
Confidence 865 555555443
No 83
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.9e-17 Score=170.61 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=148.3
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE---
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI--- 197 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v--- 197 (436)
..+..+++|.+|++|+|++.+++.|...+... +.++.+||+||+|+|||++|+++|+.+.+.-...
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 35677899999999999999999999988541 3346789999999999999999999986632110
Q ss_pred eccchhh------hh---hc---hHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 198 SSSDLVS------KW---MG---ESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 198 ~~~~l~~------~~---~g---~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
.|..+.. .+ -+ .....++.+.+.+.. +...|++|||+|.|. ....+.|+..|
T Consensus 75 pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtL 142 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTL 142 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHh
Confidence 1111100 00 00 112335666655543 345699999999873 23477888888
Q ss_pred hcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHH
Q 042771 262 QGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS 341 (436)
Q Consensus 262 ~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~ 341 (436)
+. ++..+++|++|+.+..+.+++++||. .+.|.+++.++...+++..+...+..+++..+..|+..+.| +.+++.
T Consensus 143 EE---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Al 217 (725)
T PRK07133 143 EE---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDAL 217 (725)
T ss_pred hc---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 84 45567777788889999999999995 89999999999999999888777777788889999999986 556666
Q ss_pred HHHHHHh
Q 042771 342 VCVKDVL 348 (436)
Q Consensus 342 ~l~~~a~ 348 (436)
.++..+.
T Consensus 218 slLekl~ 224 (725)
T PRK07133 218 SIAEQVS 224 (725)
T ss_pred HHHHHHH
Confidence 6666544
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=9.3e-18 Score=172.01 Aligned_cols=194 Identities=21% Similarity=0.291 Sum_probs=148.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+.+++.|.+|++|+|++.+++.|..++.. ...++.+||+||+|||||++|+.+|+.+++.
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC 73 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPC 73 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 455788999999999999999999988754 1334679999999999999999999987542
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++.. ...-..++.+.+.+. .....|+||||+|.|. ...
T Consensus 74 ~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a 135 (559)
T PRK05563 74 NECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGA 135 (559)
T ss_pred CccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHH
Confidence 23333221 112234555555544 2345699999999883 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|++.++. ++..+++|++|+.+..+.+.+++||. .+.|+.|+.++...+++..+...+..+++..+..|+..+.
T Consensus 136 ~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 136 FNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888874 35567777777888999999999995 7889999999999999999888787888999999999988
Q ss_pred CCCHHHHHHHHHHHhh
Q 042771 334 GFSGSDISVCVKDVLF 349 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~ 349 (436)
| +.++...++..+..
T Consensus 212 G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 212 G-GMRDALSILDQAIS 226 (559)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 7 67777777766543
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=8.7e-18 Score=171.32 Aligned_cols=193 Identities=18% Similarity=0.215 Sum_probs=145.1
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST--------- 193 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~--------- 193 (436)
+..++.+.+|++|+|++.+++.|..++.. .+.++.+||+||+|||||++|+++|+.+++.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~-----------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDA-----------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 34678999999999999999999988754 1333568999999999999999999988652
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.+++.... .-..++.+.+.+ ......|+||||+|.|. ..
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~ 133 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TA 133 (584)
T ss_pred ccHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HH
Confidence 2222221110 112233333332 22345699999999883 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.|+. ....+++|++|+.+..+.+++++|+ ..+.|..++.++...++...+...+..+++..+..|+..+
T Consensus 134 A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 134 GFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 57888999884 4556778888888899999999998 5899999999999999999888877778899999999988
Q ss_pred CCCCHHHHHHHHHHHhh
Q 042771 333 EGFSGSDISVCVKDVLF 349 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~ 349 (436)
.| +.+++.++++.++.
T Consensus 210 ~G-dlR~aln~Ldql~~ 225 (584)
T PRK14952 210 GG-SPRDTLSVLDQLLA 225 (584)
T ss_pred CC-CHHHHHHHHHHHHh
Confidence 76 67777777766543
No 86
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.78 E-value=2e-17 Score=173.62 Aligned_cols=214 Identities=18% Similarity=0.238 Sum_probs=156.3
Q ss_pred HhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----
Q 042771 116 RAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----- 190 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----- 190 (436)
.......+...-..=.++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|..+
T Consensus 169 l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~v 236 (758)
T PRK11034 169 MENFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 236 (758)
T ss_pred HHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 333344444444455688899999888888876643 223678999999999999999999874
Q ss_pred -----CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 191 -----DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 191 -----~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
++.++.++...+. ..|.|+.+..++.++..+....++||||||||.|++.+..... ...+.+.|...+
T Consensus 237 P~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g---~~d~~nlLkp~L-- 311 (758)
T PRK11034 237 PEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---QVDAANLIKPLL-- 311 (758)
T ss_pred CchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc---HHHHHHHHHHHH--
Confidence 5566666666555 4578888999999999988888899999999999876642111 122223233233
Q ss_pred CCCCCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----CCCCCCChhhHHHHHHHcCC
Q 042771 264 VGHNDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----DTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~t~g 334 (436)
..+.+.+|++|+.++ ..|++|.|||+ .|.++.|+.+++..||+.+.. .....+++..+..++..+..
T Consensus 312 ---~~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~r 387 (758)
T PRK11034 312 ---SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387 (758)
T ss_pred ---hCCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhc
Confidence 245688999998763 67999999995 899999999999999997653 34566788888887776554
Q ss_pred -----CCHHHHHHHHHHHhhh
Q 042771 335 -----FSGSDISVCVKDVLFE 350 (436)
Q Consensus 335 -----~s~~dl~~l~~~a~~~ 350 (436)
+-+.....++++|+..
T Consensus 388 yi~~r~lPdKaidlldea~a~ 408 (758)
T PRK11034 388 YINDRHLPDKAIDVIDEAGAR 408 (758)
T ss_pred cccCccChHHHHHHHHHHHHh
Confidence 3556777888888753
No 87
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=8.6e-18 Score=169.88 Aligned_cols=193 Identities=17% Similarity=0.222 Sum_probs=145.3
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.|..++.|.+|++++|++.+++.|..++.. .+.++++||+||+|+|||++|+++|+.+.+.
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 567789999999999999999999987743 1334789999999999999999999997541
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++... ..-..++.+...+.. ....|++|||+|.|. ...
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A 135 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSA 135 (605)
T ss_pred cccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHH
Confidence 222322110 111234444444332 234699999999873 224
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..|+. ++..+++|++|+.+..+.+++++||. .+.|+.++.++...+++..+...+..+++..+..|+..+.
T Consensus 136 ~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 136 WNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888884 44567777788889999999999995 8999999999999999998877777788999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..+++.+.
T Consensus 212 G-dlR~AlnlLekL~ 225 (605)
T PRK05896 212 G-SLRDGLSILDQLS 225 (605)
T ss_pred C-cHHHHHHHHHHHH
Confidence 7 5666666666543
No 88
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=6e-18 Score=174.19 Aligned_cols=193 Identities=22% Similarity=0.280 Sum_probs=147.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.+.+|+||+|++.+++.|..++.. ...++.+||+||+|+|||++|+++|+.+++.
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c 73 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDT-----------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPC 73 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCC
Confidence 456788999999999999999999988753 1334678999999999999999999998653
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++..- ..-..++.+...+.. ....|+||||+|.|. ...
T Consensus 74 ~~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a 135 (576)
T PRK14965 74 NVCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNA 135 (576)
T ss_pred CccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHH
Confidence 223332110 112234555544432 234699999999883 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|++.|+. +...+++|++|+.+..|.+.+++|| ..+.|..++.++....+...+...+..+++..+..|+..+.
T Consensus 136 ~naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~ 211 (576)
T PRK14965 136 FNALLKTLEE---PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGD 211 (576)
T ss_pred HHHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 6889999884 4556788888888999999999999 58999999999999999988888888889999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..++..+.
T Consensus 212 G-~lr~al~~Ldqli 225 (576)
T PRK14965 212 G-SMRDSLSTLDQVL 225 (576)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 5566666665554
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.78 E-value=1.3e-17 Score=163.29 Aligned_cols=185 Identities=22% Similarity=0.297 Sum_probs=132.1
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce----------------
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF---------------- 194 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~---------------- 194 (436)
.|++|+|++.+++.|..++......+..+ +...++++||+||||+|||++|+++|+.+.+.-
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 58999999999999999997754322222 223457899999999999999999999875531
Q ss_pred -------EEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 195 -------FSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 195 -------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
+.+.+.. .. -.-..++.+++.+.. ....|+||||+|.|. ....+.|++.|+.
T Consensus 81 ~~~hpD~~~i~~~~-~~----i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEe 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG-LS----IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEE 143 (394)
T ss_pred cCCCCCEEEecccc-cc----CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhc
Confidence 1222111 00 112335666666543 345699999999983 2235778888874
Q ss_pred CCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 042771 264 VGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
++.++++|.+|+.++.+.++++||| ..+.|+.|+.++..+++.... .++++....++..+.|..+..+..+
T Consensus 144 ---p~~~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~-----~~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 144 ---PPPRTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD-----GVDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred ---CCCCCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 3445566666666999999999999 599999999999888876432 2467778889999999777655443
No 90
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.77 E-value=1.6e-17 Score=177.53 Aligned_cols=214 Identities=17% Similarity=0.245 Sum_probs=158.4
Q ss_pred HHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----
Q 042771 115 LRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---- 190 (436)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---- 190 (436)
........+...-.+-++++++|+++..+++.+.+.. +...+++|+||||||||++|+.+|+.+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 3444445566666777999999999987777665532 233689999999999999999999986
Q ss_pred ------CCceEEEeccchh--hhhhchHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 191 ------DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 191 ------~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
+.+++.++...+. ..+.|+.+..++.+++.+.. ..+.||||||+|.|.+.+...+..+. -+.|...+
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~----~n~Lkp~l 312 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDA----ANLLKPAL 312 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccH----HHHhhHHh
Confidence 2457777777665 36788999999999998865 46789999999999876543222222 22333333
Q ss_pred hcCCCCCCceEEEeccCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHc
Q 042771 262 QGVGHNDQKVLVLAATNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKT 332 (436)
Q Consensus 262 ~~~~~~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t 332 (436)
. .+.+.+|++|+.. ..+|++|.|||. .|.++.|+.++...||+.+... ....++++.+..++..+
T Consensus 313 ~-----~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 313 A-----RGELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELS 386 (852)
T ss_pred h-----CCCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHc
Confidence 2 4568888888754 468999999995 8999999999999997665532 34567899999999999
Q ss_pred CCCCH-----HHHHHHHHHHhhh
Q 042771 333 EGFSG-----SDISVCVKDVLFE 350 (436)
Q Consensus 333 ~g~s~-----~dl~~l~~~a~~~ 350 (436)
.+|.. +---.++.+|+..
T Consensus 387 ~ryi~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 387 HRYIPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred ccccccccCccHHHHHHHHHHHH
Confidence 88743 3445677777653
No 91
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.77 E-value=2.9e-17 Score=163.68 Aligned_cols=202 Identities=19% Similarity=0.380 Sum_probs=136.5
Q ss_pred CCCCccccc-cCcHH--HHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe
Q 042771 127 KPNVKWNDV-AGLES--AKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS 198 (436)
Q Consensus 127 ~~~~~~~dl-~G~~~--~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~ 198 (436)
.+..+|+++ +|... +...+..+...+ ...+.+++||||+|+|||+|++++++++ +..+++++
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 356789994 45332 344444433221 1234579999999999999999999987 57889999
Q ss_pred ccchhhhhhchHHH-HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 199 SSDLVSKWMGESEK-LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 199 ~~~l~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
+.++...+...... .+..+....+ .+.+|+|||+|.+.++. . ....|+..++.... .+..+||+++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~-------~---~~~~l~~~~n~~~~-~~~~iiits~ 240 (405)
T TIGR00362 174 SEKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKE-------R---TQEEFFHTFNALHE-NGKQIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCH-------H---HHHHHHHHHHHHHH-CCCCEEEecC
Confidence 88876554332211 1112222222 34699999999885431 1 12233333332211 2234556565
Q ss_pred CCCC---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 278 NTPY---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 278 n~~~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
..|. .+++.+++||. ..+.++.|+.++|..|++..+......++++.++.|+....+ +.++|..+++.....+.
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~ 319 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYAS 319 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5564 35688999996 478999999999999999999888888999999999999876 77888888887765553
No 92
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.77 E-value=5e-18 Score=163.42 Aligned_cols=217 Identities=19% Similarity=0.343 Sum_probs=155.5
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhc-hH
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMG-ES 210 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g-~~ 210 (436)
|+|++++|+.+..++.....+..+... ...+++++||+||||||||++|+++|+.++.+|+.+++..+.. .|+| ..
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 899999999999888765443332221 2234589999999999999999999999999999999887763 5666 45
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 042771 211 EKLVSSLFQMAR-------------------------------------------------------------------- 222 (436)
Q Consensus 211 ~~~~~~~~~~a~-------------------------------------------------------------------- 222 (436)
+..++.+|..+.
T Consensus 94 E~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 173 (441)
T TIGR00390 94 ESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEID 173 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEe
Confidence 566665555440
Q ss_pred -----------------------------------------------------------------------hcCCeEEEE
Q 042771 223 -----------------------------------------------------------------------ESAPSIIFI 231 (436)
Q Consensus 223 -----------------------------------------------------------------------~~~p~il~i 231 (436)
....+||||
T Consensus 174 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfi 253 (441)
T TIGR00390 174 VSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFI 253 (441)
T ss_pred ecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013359999
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-------CCCceEEEecc----CCCCcccHHHHhhccceEEcCCC
Q 042771 232 DEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-------NDQKVLVLAAT----NTPYALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 232 Deid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~~~p 300 (436)
||||.++.+.......-...-++..||..++|... ...++++||+. ..|.+|-|.|.-||+.++.+..+
T Consensus 254 DEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 333 (441)
T TIGR00390 254 DEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQAL 333 (441)
T ss_pred EchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 99999997653322223344588899999987432 23467787765 35678889999999999999999
Q ss_pred CHHHHHHHHH-----------HHhC--CCCCCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHhhhH
Q 042771 301 DLKARQHMFK-----------VHLG--DTPHNLTESDFESLARKT-------EGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 301 ~~~~r~~il~-----------~~l~--~~~~~~~~~~~~~la~~t-------~g~s~~dl~~l~~~a~~~a 351 (436)
+.++...||. .+|. .....+++..+..||+.+ .+.-++-|+.++...+...
T Consensus 334 ~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~ 404 (441)
T TIGR00390 334 TTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDI 404 (441)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 9999998882 1222 233456778888888764 4556667777766666544
No 93
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.9e-17 Score=165.18 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=147.6
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--------- 192 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--------- 192 (436)
.+..++.|.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+++|+.+.+
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~-----------grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDN-----------NRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 456788999999999999999999988743 133467799999999999999999998743
Q ss_pred ---------------ceEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 193 ---------------TFFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 193 ---------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
.++.+++..-. .-..++.+...... ....|++|||+|.|. ...
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~~------gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt------------~~A 133 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASNR------GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT------------KEA 133 (535)
T ss_pred cccHHHHHHhhcCCCeEEEecccccc------CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHH
Confidence 12233322100 11334444433221 234599999999883 345
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..|+.. +..+.+|.+|+.+..+.+++++|+ ..+.|..++.++....++..+...+..+++..+..|+..+.
T Consensus 134 ~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 134 FNALLKTLEEP---PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHHhhc---CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 77888888853 455667777788899999999998 58999999999999999998888888889999999999998
Q ss_pred CCCHHHHHHHHHHHhhhH
Q 042771 334 GFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~~a 351 (436)
| +.+++..++..++..+
T Consensus 210 G-dlR~alnlLdqai~~~ 226 (535)
T PRK08451 210 G-SLRDTLTLLDQAIIYC 226 (535)
T ss_pred C-cHHHHHHHHHHHHHhc
Confidence 7 7777777777766543
No 94
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.77 E-value=2.5e-17 Score=159.01 Aligned_cols=192 Identities=17% Similarity=0.199 Sum_probs=136.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..|..++.|.+|++++|++++++.+..++.. ...++.+||+||||+|||+++++++++++.+++.+++.
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 3577899999999999999999999988742 12335677799999999999999999999999999987
Q ss_pred chhhhhhchHHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMAR-ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+ . . .......+........ ...+.||+|||+|.+.. ......|...++.. ...+.+|+++|.
T Consensus 78 ~-~-~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~~L~~~le~~---~~~~~~Ilt~n~ 140 (316)
T PHA02544 78 D-C-R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------ADAQRHLRSFMEAY---SKNCSFIITANN 140 (316)
T ss_pred c-c-c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------HHHHHHHHHHHHhc---CCCceEEEEcCC
Confidence 6 2 1 1111121222111111 13567999999998721 11233344445543 345678889999
Q ss_pred CCcccHHHHhhccceEEcCCCCHHHHHHHHHHH-------hCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 042771 280 PYALDQAIRRRFDKRIYIPLPDLKARQHMFKVH-------LGDTPHNLTESDFESLARKTEGFSGSDISVCVK 345 (436)
Q Consensus 280 ~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~-------l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 345 (436)
+..+.+++++||. .+.++.|+.+++..+++.+ +......++++.+..++....| |++.+++
T Consensus 141 ~~~l~~~l~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~ 208 (316)
T PHA02544 141 KNGIIEPLRSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP----DFRRTIN 208 (316)
T ss_pred hhhchHHHHhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHH
Confidence 9999999999994 8899999999988776543 2334566778888999988776 4544443
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.77 E-value=1.4e-17 Score=173.97 Aligned_cols=189 Identities=20% Similarity=0.295 Sum_probs=134.6
Q ss_pred cccccCCCCccccccCcHHHHH---HHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 122 AIIREKPNVKWNDVAGLESAKQ---ALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~---~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+..++.+.+|+|++|++.+.. .|..++.. ....+++||||||||||++|+++++.++.+|+.++
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 3556778899999999999885 45555432 12257999999999999999999999999999888
Q ss_pred ccchhhhhhchHHHHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEE
Q 042771 199 SSDLVSKWMGESEKLVSSLFQMA-----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLV 273 (436)
Q Consensus 199 ~~~l~~~~~g~~~~~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 273 (436)
+..... ..++..+..+ ......+|||||+|.+.. ...+.|+..++. +.+++
T Consensus 85 a~~~~i-------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------~qQdaLL~~lE~-----g~IiL 140 (725)
T PRK13341 85 AVLAGV-------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------AQQDALLPWVEN-----GTITL 140 (725)
T ss_pred hhhhhh-------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------HHHHHHHHHhcC-----ceEEE
Confidence 753211 1122222222 113456999999998732 223455555542 34555
Q ss_pred Eecc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC-------CCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 042771 274 LAAT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG-------DTPHNLTESDFESLARKTEGFSGSDISVCV 344 (436)
Q Consensus 274 i~tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~-------~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 344 (436)
|++| |....+++++++|+ ..+.|++++.+++..+++..+. .....++++.+..|++.+.| ..+.+..++
T Consensus 141 I~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~L 218 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNAL 218 (725)
T ss_pred EEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHH
Confidence 5544 33357899999998 5799999999999999999886 44567889999999999865 555655665
Q ss_pred HHHh
Q 042771 345 KDVL 348 (436)
Q Consensus 345 ~~a~ 348 (436)
+.+.
T Consensus 219 e~a~ 222 (725)
T PRK13341 219 ELAV 222 (725)
T ss_pred HHHH
Confidence 5554
No 96
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.76 E-value=3.5e-18 Score=169.59 Aligned_cols=203 Identities=21% Similarity=0.259 Sum_probs=160.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce--EEEe
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF--FSIS 198 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~--~~v~ 198 (436)
..+..+|.+.+|+|++|++.+...|..++..- +-.++.||.||.|||||++||.+|+.++|.- ..-.
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP 72 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP 72 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc
Confidence 45667899999999999999999999988652 3347899999999999999999999987753 1111
Q ss_pred ccch------hhh-h------h---chHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHH
Q 042771 199 SSDL------VSK-W------M---GESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELL 258 (436)
Q Consensus 199 ~~~l------~~~-~------~---g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll 258 (436)
|..+ ... + - ...-..++.+.+.+ ......|++|||+|.| +...++.||
T Consensus 73 C~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALL 140 (515)
T COG2812 73 CGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALL 140 (515)
T ss_pred chhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHh
Confidence 1111 000 0 0 01123344444444 2345679999999987 455689999
Q ss_pred HHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHH
Q 042771 259 VQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGS 338 (436)
Q Consensus 259 ~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~ 338 (436)
+.++ +++..|.+|.+|..+..+++.++||| .++.|...+.++....|...+....+..++..+..|++..+| +.+
T Consensus 141 KTLE---EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~R 215 (515)
T COG2812 141 KTLE---EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLR 215 (515)
T ss_pred cccc---cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chh
Confidence 9988 56778999999999999999999999 588899999999999999999999999999999999999998 788
Q ss_pred HHHHHHHHHhhhH
Q 042771 339 DISVCVKDVLFEP 351 (436)
Q Consensus 339 dl~~l~~~a~~~a 351 (436)
|...++.++....
T Consensus 216 DalslLDq~i~~~ 228 (515)
T COG2812 216 DALSLLDQAIAFG 228 (515)
T ss_pred hHHHHHHHHHHcc
Confidence 9999998887653
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=6.6e-17 Score=161.74 Aligned_cols=192 Identities=18% Similarity=0.211 Sum_probs=140.9
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------- 193 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------- 193 (436)
..+..++.+.+|+||+|++.+++.|..++.. ...++.+|||||||+|||++|+++|+.+.+.
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~-----------~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~ 73 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRF-----------NRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE 73 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC
Confidence 3456778899999999999999999988754 1334679999999999999999999987542
Q ss_pred ------------------eEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHH
Q 042771 194 ------------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 194 ------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
++.+++.... .-..++.+.+.. ......||+|||+|.|. .
T Consensus 74 ~c~~c~~C~~i~~~~~~d~~~i~g~~~~------gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~ 135 (451)
T PRK06305 74 PCNQCASCKEISSGTSLDVLEIDGASHR------GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------K 135 (451)
T ss_pred CCcccHHHHHHhcCCCCceEEeeccccC------CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------H
Confidence 2223221110 012223222222 22456799999999873 2
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK 331 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~ 331 (436)
...+.|+..++. +...+++|++|+.+..+.+++++|| ..+.|+.++.++...++...+...+..++++.+..|+..
T Consensus 136 ~~~n~LLk~lEe---p~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 136 EAFNSLLKTLEE---PPQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred HHHHHHHHHhhc---CCCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 346778888875 3456777778888899999999999 589999999999999999888777777899999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 042771 332 TEGFSGSDISVCVKD 346 (436)
Q Consensus 332 t~g~s~~dl~~l~~~ 346 (436)
+.| +.+++...++.
T Consensus 212 s~g-dlr~a~~~Lek 225 (451)
T PRK06305 212 AQG-SLRDAESLYDY 225 (451)
T ss_pred cCC-CHHHHHHHHHH
Confidence 987 44444444443
No 98
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.76 E-value=2.9e-17 Score=161.24 Aligned_cols=194 Identities=21% Similarity=0.305 Sum_probs=144.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++++.+|++++|++.+++.|...+.. ...++.+||+||||+|||++|+++++.+.+.
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 466788999999999999999999987743 1334679999999999999999999987532
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++.. ......++.++..+.. ....||+|||+|.+. ...
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~ 133 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSA 133 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHH
Confidence 22333221 0122335556665533 234599999999873 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++. ++..+++|++|+.+..+.+++++|| ..+.|++|+.++...+++.++...+..+++..+..|+..+.
T Consensus 134 ~~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 134 FNALLKTLEE---PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5677887764 3456777778888888899999999 58899999999999999999887777789999999999987
Q ss_pred CCCHHHHHHHHHHHhh
Q 042771 334 GFSGSDISVCVKDVLF 349 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~ 349 (436)
| +.+.+...++.+..
T Consensus 210 g-~~~~a~~~lekl~~ 224 (355)
T TIGR02397 210 G-SLRDALSLLDQLIS 224 (355)
T ss_pred C-ChHHHHHHHHHHHh
Confidence 6 55555555555443
No 99
>PRK06893 DNA replication initiation factor; Validated
Probab=99.76 E-value=6.8e-17 Score=148.14 Aligned_cols=191 Identities=13% Similarity=0.164 Sum_probs=122.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
-.+..+|++++|.+... .+..+... +.. ...+.++||||||||||+|++++|+++ +....+++....
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~-------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~ 78 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKN-------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS 78 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHH-------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh
Confidence 34667999999766432 11111111 111 122468999999999999999999986 345555555322
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.. ....++.... ...+|+|||++.+.+.. .+...+-.+++.+. .....+++++++..|..
T Consensus 79 ~~--------~~~~~~~~~~--~~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~---~~~~~illits~~~p~~ 138 (229)
T PRK06893 79 QY--------FSPAVLENLE--QQDLVCLDDLQAVIGNE-------EWELAIFDLFNRIK---EQGKTLLLISADCSPHA 138 (229)
T ss_pred hh--------hhHHHHhhcc--cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHH---HcCCcEEEEeCCCChHH
Confidence 11 1112233222 34699999999875321 12222333333332 22333445556666655
Q ss_pred cc---HHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 283 LD---QAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 283 l~---~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
++ +.+++|+. ..+.++.|+.+++..|++..+......++++.+.+|++...| +.+.+..++...
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 54 89999764 688899999999999999988877888999999999999986 555666665543
No 100
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.76 E-value=2.1e-16 Score=159.94 Aligned_cols=200 Identities=18% Similarity=0.299 Sum_probs=133.6
Q ss_pred CCCccccccCcHH---HHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEec
Q 042771 128 PNVKWNDVAGLES---AKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISS 199 (436)
Q Consensus 128 ~~~~~~dl~G~~~---~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~ 199 (436)
+..+|++++.-.. +...+..++..+ ......++|||++|+|||+|++++++++ +..++++++
T Consensus 283 ~~~TFDnFvvG~sN~~A~aaa~avae~~----------~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita 352 (617)
T PRK14086 283 PKYTFDTFVIGASNRFAHAAAVAVAEAP----------AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS 352 (617)
T ss_pred CCCCHhhhcCCCccHHHHHHHHHHHhCc----------cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4568888863222 333334333221 1223459999999999999999999986 568899999
Q ss_pred cchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 200 SDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 200 ~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
.+|...+...........|... -..+.+|+||||+.+.++. ... ..|+..++.+... ++.+|| |+|.
T Consensus 353 eef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke-------~tq---eeLF~l~N~l~e~-gk~III-TSd~ 419 (617)
T PRK14086 353 EEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE-------STQ---EEFFHTFNTLHNA-NKQIVL-SSDR 419 (617)
T ss_pred HHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH-------HHH---HHHHHHHHHHHhc-CCCEEE-ecCC
Confidence 8887665443222111223322 2245799999999885432 122 2233333322122 233444 5544
Q ss_pred -C---CcccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 280 -P---YALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 280 -~---~~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
| ..+++.|++||. .++.+..|+.+.|..||+..+....+.++++.+++|+....+ +.+.|..++......+
T Consensus 420 ~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a 496 (617)
T PRK14086 420 PPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFA 496 (617)
T ss_pred ChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHH
Confidence 3 357899999985 667889999999999999999999999999999999999875 6778888887765444
No 101
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.8e-17 Score=164.79 Aligned_cols=239 Identities=38% Similarity=0.590 Sum_probs=201.4
Q ss_pred cCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEE
Q 042771 152 PVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIF 230 (436)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~ 230 (436)
++..+..++. ...++.+++++||||+|||+++++++.+ +..++.++......++.+.++..+..+|..+....|++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~ 81 (494)
T COG0464 3 PLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIF 81 (494)
T ss_pred CccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEe
Confidence 3445555555 6677899999999999999999999999 7666888899999999999999999999999999999999
Q ss_pred EccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHH
Q 042771 231 IDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHM 308 (436)
Q Consensus 231 iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~i 308 (436)
+|++|.+.+.+.. ........+..+++..+++.. ... +++++.+|.+..+++++++ ||+..+.+..|+...+.++
T Consensus 82 ~d~~~~~~~~~~~-~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 82 IDEIDALAPKRSS-DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred echhhhcccCccc-cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 9999999998876 466778899999999999987 555 8889999999999999998 9999999999999999999
Q ss_pred HHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHh
Q 042771 309 FKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELA 388 (436)
Q Consensus 309 l~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (436)
+.......... .+.++..++..+.|++++++..+++.+...++++....
T Consensus 159 ~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~------------------------------ 207 (494)
T COG0464 159 LQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDL------------------------------ 207 (494)
T ss_pred HHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhcc------------------------------
Confidence 98887665543 37789999999999999999999999999888876200
Q ss_pred hhccccccCCCCcCHHHHHHHHhhCCC---------CCCHHHHHHHHHHHHH
Q 042771 389 AKGLAEQILPPPISKTDFDKVLARQRP---------TVSKSDLEVQERFTKE 431 (436)
Q Consensus 389 ~~~~~~~~~~~~vt~~d~~~al~~~~p---------s~s~~~~~~y~~~~~~ 431 (436)
......++.+||.++++.+.| .++|+++..++...+.
T Consensus 208 ------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~diggl~~~k~~ 253 (494)
T COG0464 208 ------VGEYIGVTEDDFEEALKKVLPSRGVLFEDEDVTLDDIGGLEEAKEE 253 (494)
T ss_pred ------CcccccccHHHHHHHHHhcCcccccccCCCCcceehhhcHHHHHHH
Confidence 001157999999999999765 4777777655554443
No 102
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.75 E-value=9e-18 Score=161.75 Aligned_cols=217 Identities=20% Similarity=0.354 Sum_probs=156.0
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhc-hH
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMG-ES 210 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g-~~ 210 (436)
|+|++++|+.+..++....++..+... ....+.++||+||||||||++|+++|+.++.+|+.++++.+.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 899999999999888654332222211 1123489999999999999999999999999999999988875 5777 44
Q ss_pred HHHHHHHHHHHH--------------------------------------------------------------------
Q 042771 211 EKLVSSLFQMAR-------------------------------------------------------------------- 222 (436)
Q Consensus 211 ~~~~~~~~~~a~-------------------------------------------------------------------- 222 (436)
+..++.+|..|.
T Consensus 97 e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~ 176 (443)
T PRK05201 97 ESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIE 176 (443)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEE
Confidence 566666655550
Q ss_pred ----------------------------------------------------------------------hcCCeEEEEc
Q 042771 223 ----------------------------------------------------------------------ESAPSIIFID 232 (436)
Q Consensus 223 ----------------------------------------------------------------------~~~p~il~iD 232 (436)
...-+|||||
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiD 256 (443)
T PRK05201 177 VAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFID 256 (443)
T ss_pred ecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEE
Confidence 0123599999
Q ss_pred cccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-------CCCceEEEecc----CCCCcccHHHHhhccceEEcCCCC
Q 042771 233 EIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-------NDQKVLVLAAT----NTPYALDQAIRRRFDKRIYIPLPD 301 (436)
Q Consensus 233 eid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~~~p~ 301 (436)
|||.++.........-...-++..||..++|... ...++++||+. ..|.+|-|.|.-||+.++.+..++
T Consensus 257 EiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L~ 336 (443)
T PRK05201 257 EIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDALT 336 (443)
T ss_pred cchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCCC
Confidence 9999997754322233345588899999997432 33567777665 456778899999999999999999
Q ss_pred HHHHHHHHHH-----------HhC--CCCCCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHhhhH
Q 042771 302 LKARQHMFKV-----------HLG--DTPHNLTESDFESLARKT-------EGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 302 ~~~r~~il~~-----------~l~--~~~~~~~~~~~~~la~~t-------~g~s~~dl~~l~~~a~~~a 351 (436)
.++...||.. +|. +....+++..++.||+.+ .+.-++-|+.++...+...
T Consensus 337 ~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~ 406 (443)
T PRK05201 337 EEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDI 406 (443)
T ss_pred HHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 9999988821 222 333456788888888764 3556677777776666544
No 103
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=4.9e-17 Score=161.01 Aligned_cols=199 Identities=17% Similarity=0.218 Sum_probs=140.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE-----
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS----- 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~----- 196 (436)
.+..++.|.+|++|+|++.+++.|..++.. .+.++++||+||||+|||++|+++|+.+.+.-..
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~ 73 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADY 73 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccc
Confidence 456788999999999999999999887753 2344679999999999999999999998763100
Q ss_pred -----Eeccchhh-------------hhhc---hHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHH
Q 042771 197 -----ISSSDLVS-------------KWMG---ESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 197 -----v~~~~l~~-------------~~~g---~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
-.|....+ .+.+ ..-..++.+.+.+. .....|+||||+|.|..
T Consensus 74 ~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~------------ 141 (397)
T PRK14955 74 LQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI------------ 141 (397)
T ss_pred cccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH------------
Confidence 01110000 0001 11233444444442 22346999999998831
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK 331 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~ 331 (436)
...+.|+..++. +.+.+++|++|+.+..+.+++++|+. .+.|..++.++....++..+......++++.+..|+..
T Consensus 142 ~~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 142 AAFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred HHHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 235667777773 34455666666777889999999994 88999999999999999888777777899999999999
Q ss_pred cCCCCHHHHHHHHHHHh
Q 042771 332 TEGFSGSDISVCVKDVL 348 (436)
Q Consensus 332 t~g~s~~dl~~l~~~a~ 348 (436)
+.| +.+.+...++.+.
T Consensus 218 s~g-~lr~a~~~L~kl~ 233 (397)
T PRK14955 218 AQG-SMRDAQSILDQVI 233 (397)
T ss_pred cCC-CHHHHHHHHHHHH
Confidence 987 4555555555443
No 104
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.75 E-value=1.3e-16 Score=146.81 Aligned_cols=188 Identities=14% Similarity=0.161 Sum_probs=124.7
Q ss_pred CCCCcccccc-C-cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc
Q 042771 127 KPNVKWNDVA-G-LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD 201 (436)
Q Consensus 127 ~~~~~~~dl~-G-~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~ 201 (436)
.+..+|++++ | +..+...+..+... ....+++||||+|||||+|++++++++ +..+.+++...
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 4556888887 4 55666666665422 122579999999999999999999875 34566666554
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 281 (436)
.... ...+.+..... .+|+|||++.+.++. .+...+-.+++.+- ......+++.+++.|.
T Consensus 84 ~~~~--------~~~~~~~~~~~--dlliiDdi~~~~~~~-------~~~~~lf~l~n~~~---e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 84 RAWF--------VPEVLEGMEQL--SLVCIDNIECIAGDE-------LWEMAIFDLYNRIL---ESGRTRLLITGDRPPR 143 (235)
T ss_pred Hhhh--------hHHHHHHhhhC--CEEEEeChhhhcCCH-------HHHHHHHHHHHHHH---HcCCCeEEEeCCCChH
Confidence 3211 11222222222 599999999874321 22222223333221 1122235555555654
Q ss_pred c---ccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 282 A---LDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 282 ~---l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
. +.+.+++||. .++.+..|+.+++.++++.........++++.+++|++...| +.+.+..++...
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 4 5799999996 788999999999999999877777788999999999999987 566666666653
No 105
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=5.2e-17 Score=163.43 Aligned_cols=194 Identities=19% Similarity=0.273 Sum_probs=143.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.|.+|++++|++.+++.|..++.. ...++.+|||||+|+|||++|+.+|+.+++.
T Consensus 5 ~~~~kyRP~~f~diiGq~~i~~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc 73 (486)
T PRK14953 5 PFARKYRPKFFKEVIGQEIVVRILKNAVKL-----------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPC 73 (486)
T ss_pred HHHHhhCCCcHHHccChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCC
Confidence 466788999999999999999999988744 1333568999999999999999999998641
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.++++. ...-..++.+.+.+. ...+.|++|||+|.|. ...
T Consensus 74 ~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a 135 (486)
T PRK14953 74 GKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEA 135 (486)
T ss_pred CccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHH
Confidence 11121110 011222444444443 2345699999999873 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++. ++..+++|.+|+.++.+.+++++||. .+.|++++.++...++...+...+..+++..+..|+..+.
T Consensus 136 ~naLLk~LEe---pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 136 FNALLKTLEE---PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHHhc---CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888874 34456666667778889999999995 8999999999999999999888788888999999999988
Q ss_pred CCCHHHHHHHHHHHhh
Q 042771 334 GFSGSDISVCVKDVLF 349 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~ 349 (436)
| +.+++..+++.+..
T Consensus 212 G-~lr~al~~Ldkl~~ 226 (486)
T PRK14953 212 G-GMRDAASLLDQAST 226 (486)
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 56777777766643
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=5.3e-17 Score=165.79 Aligned_cols=193 Identities=19% Similarity=0.243 Sum_probs=145.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.|.+|++|+|++.+++.|..++.. ...++.+|||||+|+|||++|+++|+.+++.
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~-----------~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC 73 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIES-----------NKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC 73 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC
Confidence 456788999999999999999999988753 1334679999999999999999999998653
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.+++.. ...-..++.+.+.+. .....|++|||+|.|. ...
T Consensus 74 ~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls------------~~a 135 (563)
T PRK06647 74 GECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS------------NSA 135 (563)
T ss_pred ccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC------------HHH
Confidence 12222110 011123344433322 3455699999999883 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++. ++..+++|++|+.+..+.+++++||. .+.|..++.++...+++..+......+++..+..|+..+.
T Consensus 136 ~naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~ 211 (563)
T PRK06647 136 FNALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKST 211 (563)
T ss_pred HHHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6778888874 45567777777888999999999995 7899999999999999998877777789999999999988
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..++..+.
T Consensus 212 G-dlR~alslLdkli 225 (563)
T PRK06647 212 G-SVRDAYTLFDQVV 225 (563)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6777777776543
No 107
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.3e-16 Score=163.84 Aligned_cols=198 Identities=17% Similarity=0.231 Sum_probs=141.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE-----
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS----- 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~----- 196 (436)
.+..++.+.+|++|+|++.+++.|+.++.. .+-++++||+||+|||||++|+.+|+.+.+.-..
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~ 73 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVY 73 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccc
Confidence 456788999999999999999999987743 1334679999999999999999999998773110
Q ss_pred -----Eeccch------h-------hhhhc---hHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHH
Q 042771 197 -----ISSSDL------V-------SKWMG---ESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 197 -----v~~~~l------~-------~~~~g---~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
-.|... . ..+.+ ..-..++.+.+.+ ......|++|||+|.|. .
T Consensus 74 ~~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~ 141 (620)
T PRK14954 74 LQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------T 141 (620)
T ss_pred ccccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------H
Confidence 011100 0 00011 0123344444444 22345699999999883 2
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK 331 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~ 331 (436)
...+.|+..|+. +...+++|++|+.+..+.+++++|+ ..+.|..++.++....+...+......++++.+..|+..
T Consensus 142 ~a~naLLK~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~ 217 (620)
T PRK14954 142 AAFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARK 217 (620)
T ss_pred HHHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 236778888874 3445666666677889999999999 599999999999999998888777777899999999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 042771 332 TEGFSGSDISVCVKDV 347 (436)
Q Consensus 332 t~g~s~~dl~~l~~~a 347 (436)
+.| +.+++...++..
T Consensus 218 s~G-dlr~al~eLeKL 232 (620)
T PRK14954 218 AQG-SMRDAQSILDQV 232 (620)
T ss_pred hCC-CHHHHHHHHHHH
Confidence 987 444544444443
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=6.4e-17 Score=165.89 Aligned_cols=200 Identities=17% Similarity=0.169 Sum_probs=149.7
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe--
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS-- 198 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~-- 198 (436)
+.+..++.+.+|++|+|++.+++.|..++.. .+.++++||+||+|+|||++|+++|+.+++.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 5677889999999999999999999987753 234478999999999999999999999876432111
Q ss_pred -----cc------chhhh--------h--hchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 199 -----SS------DLVSK--------W--MGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 199 -----~~------~l~~~--------~--~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
|. .+... . ....-..++.+.+.+.. ....|+||||+|.|. ...
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a 148 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAA 148 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHH
Confidence 10 00000 0 00112345556555532 245699999999883 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|++.|+. +...+.+|++|+.+..+.+.+++|| ..+.|..++.++...+++..+......++++.+..|+..+.
T Consensus 149 ~naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~ 224 (598)
T PRK09111 149 FNALLKTLEE---PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAE 224 (598)
T ss_pred HHHHHHHHHh---CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888884 3455677777788888999999999 58999999999999999999988888889999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++..++..+.
T Consensus 225 G-dlr~al~~Ldkli 238 (598)
T PRK09111 225 G-SVRDGLSLLDQAI 238 (598)
T ss_pred C-CHHHHHHHHHHHH
Confidence 6 6777777776654
No 109
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=2.5e-16 Score=156.94 Aligned_cols=203 Identities=17% Similarity=0.292 Sum_probs=131.9
Q ss_pred CCCCcccccc-CcH--HHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 127 KPNVKWNDVA-GLE--SAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 127 ~~~~~~~dl~-G~~--~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
.|..+|++++ |.. .+...+..+...+.. ....+..+++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4678999986 532 233444444322110 011234679999999999999999999976 6788999987
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.+...+.......-...|.... ....+|+|||++.+.++. .. ...|+..++.+.. .+..+|++++..|
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~-------~~---qeelf~l~N~l~~-~~k~IIlts~~~p 246 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKG-------AT---QEEFFHTFNSLHT-EGKLIVISSTCAP 246 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCCh-------hh---HHHHHHHHHHHHH-CCCcEEEecCCCH
Confidence 7655433221111111233222 245699999999875322 11 2223332222211 2334555555555
Q ss_pred C---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 281 Y---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 281 ~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
. .+++++++||. ..+.++.|+.++|..|++..+......++++.++.|+....+ +.+.|..++...+
T Consensus 247 ~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~ 318 (445)
T PRK12422 247 QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLA 318 (445)
T ss_pred HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 4 56789999995 788889999999999999999888888999999999998875 5566666666654
No 110
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=1.2e-16 Score=159.69 Aligned_cols=202 Identities=18% Similarity=0.312 Sum_probs=134.5
Q ss_pred cCCCCcccccc-CcH--HHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEE
Q 042771 126 EKPNVKWNDVA-GLE--SAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSI 197 (436)
Q Consensus 126 ~~~~~~~~dl~-G~~--~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v 197 (436)
-.|..+|++++ |.. .+......+...+ ..+.+++||||+|+|||+|++++++++ +..++++
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~~-----------~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi 166 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKNP-----------GRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYI 166 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhCc-----------CCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 35678999987 532 2223333332211 113579999999999999999999986 4678899
Q ss_pred eccchhhhhhchHH-HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 042771 198 SSSDLVSKWMGESE-KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAA 276 (436)
Q Consensus 198 ~~~~l~~~~~g~~~-~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 276 (436)
++.++...+..... ..+.. |.......+.+|+|||++.+.+.. . ....|+..++.+.. .+..+|+++
T Consensus 167 ~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~-------~---~q~elf~~~n~l~~-~~k~iIits 234 (440)
T PRK14088 167 TSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKT-------G---VQTELFHTFNELHD-SGKQIVICS 234 (440)
T ss_pred EHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcH-------H---HHHHHHHHHHHHHH-cCCeEEEEC
Confidence 98887665432211 11112 222222357799999999875431 1 11223333332211 233455555
Q ss_pred cCCCCc---ccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 277 TNTPYA---LDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 277 tn~~~~---l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
.+.|.. +.+.+++||. ..+.+.+|+.+.|..|++..+......++++.+..|++...| +.+.|..++......+
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~ 313 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYK 313 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHH
Confidence 566654 5678888984 577899999999999999999888888999999999999986 7778888887765444
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.74 E-value=1.8e-16 Score=153.24 Aligned_cols=191 Identities=20% Similarity=0.260 Sum_probs=136.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-----CceE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-----STFF 195 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-----~~~~ 195 (436)
..|..++.|.+|+|++|++++++.|..++... ...+++|+||||||||++++++++++. ..++
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i 72 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFL 72 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceE
Confidence 45788999999999999999999999887431 113689999999999999999999873 2345
Q ss_pred EEeccchhhhhhchHHHHHH-HHHHHHHh-----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 196 SISSSDLVSKWMGESEKLVS-SLFQMARE-----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~-~~~~~a~~-----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
.+++++... ...+. .+...+.. ..+.+|+|||+|.+.. .....|+..++.. ..
T Consensus 73 ~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~------------~~~~~L~~~le~~---~~ 131 (319)
T PRK00440 73 ELNASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS------------DAQQALRRTMEMY---SQ 131 (319)
T ss_pred Eeccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH------------HHHHHHHHHHhcC---CC
Confidence 554443211 11111 11122211 2356999999998732 1234566666543 23
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
.+.+|+++|.+..+.+++.+|+. .+.|+.++.++...+++.++......+++..+..|+..+.| +.+.+...++.
T Consensus 132 ~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~ 206 (319)
T PRK00440 132 NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQA 206 (319)
T ss_pred CCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 35566677888888889999995 78999999999999999999888888899999999999876 34444444443
No 112
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.74 E-value=6e-17 Score=173.77 Aligned_cols=198 Identities=17% Similarity=0.283 Sum_probs=146.2
Q ss_pred HhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----
Q 042771 116 RAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----- 190 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----- 190 (436)
.......+...-.+-++++++|.+...+++.+.+.. +...+++|+||||||||++|+++|..+
T Consensus 161 l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~v 228 (857)
T PRK10865 161 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 228 (857)
T ss_pred HHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCC
Confidence 334444455555667899999999887777765532 233689999999999999999999987
Q ss_pred -----CCceEEEeccchh--hhhhchHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh
Q 042771 191 -----DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 191 -----~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~ 262 (436)
+.+++.++...+. .++.|+.+..++.+|..+.. ..++||||||+|.|.+.+...+..+ ..+.|...+
T Consensus 229 p~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d----~~~~lkp~l- 303 (857)
T PRK10865 229 PEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD----AGNMLKPAL- 303 (857)
T ss_pred chhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchh----HHHHhcchh-
Confidence 6788888888765 45788899999999988644 5678999999999987654322222 222232222
Q ss_pred cCCCCCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHcC
Q 042771 263 GVGHNDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKTE 333 (436)
Q Consensus 263 ~~~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t~ 333 (436)
..+.+.+|++|+..+ .+|+++.|||+ .|.++.|+.+++..|++.+... ....+++..+...+..+.
T Consensus 304 ----~~g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ 378 (857)
T PRK10865 304 ----ARGELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSH 378 (857)
T ss_pred ----hcCCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhh
Confidence 245688888887764 58999999996 6889999999999999887643 234566777777666665
Q ss_pred CC
Q 042771 334 GF 335 (436)
Q Consensus 334 g~ 335 (436)
+|
T Consensus 379 ry 380 (857)
T PRK10865 379 RY 380 (857)
T ss_pred cc
Confidence 54
No 113
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3.7e-16 Score=161.38 Aligned_cols=190 Identities=19% Similarity=0.250 Sum_probs=142.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce--------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF-------- 194 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~-------- 194 (436)
+..++.+.+|++++|++.+++.|..++... +..+++||+||+|+|||++|+++|+.+++..
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 456788999999999999999999887542 2236899999999999999999999987631
Q ss_pred ------------------EEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 195 ------------------FSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 195 ------------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
+.++.. ....-..++.+...+.. ....||||||+|.|. ..
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt------------~~ 136 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS------------TA 136 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC------------HH
Confidence 122111 11223455666655532 344699999999883 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|++.|+. ....+++|++|+.+..+.+++++|| ..+.|+.++.++....+...+......+++..+..|++.+
T Consensus 137 a~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 137 AFNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 46788888884 4556777777888889999999999 5888999999888888888777767778888999999999
Q ss_pred CCCCHHHHHHHHHH
Q 042771 333 EGFSGSDISVCVKD 346 (436)
Q Consensus 333 ~g~s~~dl~~l~~~ 346 (436)
.| +.+++..+++.
T Consensus 213 ~G-~lr~A~~lLek 225 (620)
T PRK14948 213 QG-GLRDAESLLDQ 225 (620)
T ss_pred CC-CHHHHHHHHHH
Confidence 87 34555555544
No 114
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.74 E-value=1.2e-16 Score=157.11 Aligned_cols=222 Identities=22% Similarity=0.322 Sum_probs=154.6
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhh-c---CCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhch
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFF-T---GKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMGE 209 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~-~---~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g~ 209 (436)
|+|++.+++.|..++..+..+-... . ....+..++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 8999999999988775432221110 0 11234578999999999999999999999999999999988753 56665
Q ss_pred H-HHHHHHHHHH----HHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCC----------CCCCceE
Q 042771 210 S-EKLVSSLFQM----ARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVG----------HNDQKVL 272 (436)
Q Consensus 210 ~-~~~~~~~~~~----a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~----------~~~~~v~ 272 (436)
. +..+..++.. .....++||||||||.+......+. ..-....+++.||..|++.. .+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 3 3444444432 2234678999999999976632211 11122457888999998531 1112344
Q ss_pred EEeccCCCC----------------------------------------------------cccHHHHhhccceEEcCCC
Q 042771 273 VLAATNTPY----------------------------------------------------ALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 273 vi~ttn~~~----------------------------------------------------~l~~~l~~Rf~~~i~~~~p 300 (436)
+|.|+|..+ .+.|+|+.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555554410 1467888899999999999
Q ss_pred CHHHHHHHHHH----Hh-------C--CCCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 301 DLKARQHMFKV----HL-------G--DTPHNLTESDFESLARK--TEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 301 ~~~~r~~il~~----~l-------~--~~~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+.++...|+.. .+ . .....+++..++.|++. ..++.++.|+.+++..+...+.+..
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999999972 22 2 23345789999999986 5567789999999998888776654
No 115
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.74 E-value=1.6e-16 Score=156.56 Aligned_cols=270 Identities=17% Similarity=0.197 Sum_probs=163.2
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---------CceEEEeccc
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---------STFFSISSSD 201 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---------~~~~~v~~~~ 201 (436)
..++++|.++..+.|...+...+. ...+.+++|+||||||||++++++++.+. ..+++++|..
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~ 84 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI 84 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence 345799999999999887754221 12336799999999999999999998752 5688888865
Q ss_pred hhhhh----------h--c--------hHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHH
Q 042771 202 LVSKW----------M--G--------ESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQ 260 (436)
Q Consensus 202 l~~~~----------~--g--------~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~ 260 (436)
..+.+ . + .....+..++..... ..+.||+|||+|.|.... ..++..|+..
T Consensus 85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~---------~~~L~~l~~~ 155 (365)
T TIGR02928 85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD---------DDLLYQLSRA 155 (365)
T ss_pred CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC---------cHHHHhHhcc
Confidence 43210 0 0 112234445554432 456799999999996221 1233444433
Q ss_pred hhcCCCCCCceEEEeccCCCC---cccHHHHhhcc-ceEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHc--
Q 042771 261 MQGVGHNDQKVLVLAATNTPY---ALDQAIRRRFD-KRIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKT-- 332 (436)
Q Consensus 261 l~~~~~~~~~v~vi~ttn~~~---~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t-- 332 (436)
.+.......++.+|+++|.+. .+++.+.+||. ..+.|++++.++..+|++..+.. ....++++.+..++..+
T Consensus 156 ~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~ 235 (365)
T TIGR02928 156 RSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ 235 (365)
T ss_pred ccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH
Confidence 211112335688888998885 57888888885 67999999999999999998752 23345676666655543
Q ss_pred -CCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHh
Q 042771 333 -EGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLA 411 (436)
Q Consensus 333 -~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~ 411 (436)
.| ..+.+..+|+.|+..+..+.... . ...-+......+........+...+.....+..|+.
T Consensus 236 ~~G-d~R~al~~l~~a~~~a~~~~~~~-------------i---t~~~v~~a~~~~~~~~~~~~i~~l~~~~~~~l~ai~ 298 (365)
T TIGR02928 236 EHG-DARKAIDLLRVAGEIAEREGAER-------------V---TEDHVEKAQEKIEKDRLLELIRGLPTHSKLVLLAIA 298 (365)
T ss_pred hcC-CHHHHHHHHHHHHHHHHHcCCCC-------------C---CHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44 34455567778877766543211 0 001111111111111111111113455555566655
Q ss_pred h-----CCCCCCHHHHHHHHHHHHHhCC
Q 042771 412 R-----QRPTVSKSDLEVQERFTKEFGE 434 (436)
Q Consensus 412 ~-----~~ps~s~~~~~~y~~~~~~~~~ 434 (436)
. -.+..+.+-++.|..+.+.+|-
T Consensus 299 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~ 326 (365)
T TIGR02928 299 NLAANDEDPFRTGEVYEVYKEVCEDIGV 326 (365)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHhcCC
Confidence 2 2233445777889888887763
No 116
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.73 E-value=1.5e-16 Score=163.26 Aligned_cols=192 Identities=22% Similarity=0.263 Sum_probs=132.7
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------CCceEEEeccch
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----------DSTFFSISSSDL 202 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----------~~~~~~v~~~~l 202 (436)
+.|.|.++-.+.|..++...+. +..+...++|+|+||||||++++.+.+++ ...+++|+|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 6799999999999888765432 12232346799999999999999998776 256789998654
Q ss_pred hhhh-----------------hchHHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 203 VSKW-----------------MGESEKLVSSLFQMARE--SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 203 ~~~~-----------------~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
...+ .......+..+|..... ....||+|||||.|.... ..++-.|+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~--- 895 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDW--- 895 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHH---
Confidence 3221 01123455666665522 235699999999996431 2233333332
Q ss_pred CCCCCCceEEEeccCC---CCcccHHHHhhccc-eEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHH
Q 042771 264 VGHNDQKVLVLAATNT---PYALDQAIRRRFDK-RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSD 339 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~---~~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~d 339 (436)
.......+.||+++|. +..+++.+++||.. .+.|++++.+++.+||+..+......+++..+..+|+.+...+ +|
T Consensus 896 ~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~S-GD 974 (1164)
T PTZ00112 896 PTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVS-GD 974 (1164)
T ss_pred hhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcC-CH
Confidence 2233457889999986 45678899998864 4889999999999999999876555678999999998655332 36
Q ss_pred HHHHH
Q 042771 340 ISVCV 344 (436)
Q Consensus 340 l~~l~ 344 (436)
++.++
T Consensus 975 ARKAL 979 (1164)
T PTZ00112 975 IRKAL 979 (1164)
T ss_pred HHHHH
Confidence 66554
No 117
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1.7e-16 Score=156.31 Aligned_cols=198 Identities=18% Similarity=0.195 Sum_probs=142.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec--
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS-- 199 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~-- 199 (436)
.+..++.|.+|++++|++.+++.+...+... ..++++|||||||+|||++|+++++.+.++.....+
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 3567889999999999999999999887541 334689999999999999999999987652211100
Q ss_pred -----cchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc
Q 042771 200 -----SDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 200 -----~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
.++. .........++.+++.+.. ..+.||+|||+|.+.. ...+.|+..++. +...
T Consensus 75 ~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~---~~~~ 138 (367)
T PRK14970 75 FSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEE---PPAH 138 (367)
T ss_pred CCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhC---CCCc
Confidence 0000 0001112445566655432 3456999999998732 235667777764 3344
Q ss_pred eEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 271 VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
.++|++++.+..+.+++.+|+. .+.++.|+.++...++...+...+..++++.+..|+..+.| +.+.+...++...
T Consensus 139 ~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~ 214 (367)
T PRK14970 139 AIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVV 214 (367)
T ss_pred eEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 5666677778899999999994 78999999999999999888877877899999999999876 5555555555544
No 118
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.73 E-value=1.1e-16 Score=171.86 Aligned_cols=209 Identities=18% Similarity=0.287 Sum_probs=156.2
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc--------
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-------- 190 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-------- 190 (436)
....+......-.|+.++|.++..+.+.+.+.. +...+++|+||||||||++|+.+|..+
T Consensus 165 ~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~ 232 (821)
T CHL00095 165 FGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDI 232 (821)
T ss_pred HHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 334444444556799999999999999887643 344689999999999999999999986
Q ss_pred --CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC
Q 042771 191 --DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH 266 (436)
Q Consensus 191 --~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 266 (436)
+.+++.++...+. .+|.|+.+..++.+++.+....+.||||||+|.|.+.+...+.. .+.+.|...+.
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~----~~a~lLkp~l~---- 304 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAI----DAANILKPALA---- 304 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcc----cHHHHhHHHHh----
Confidence 4688999988776 46789999999999999988888999999999998765432221 22222333332
Q ss_pred CCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----CCCCCCChhhHHHHHHHcCCCCH
Q 042771 267 NDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----DTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 267 ~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
.+.+.+|++|+... ..++++.+||. .+.++.|+.++...|++.... .....++++.+..++..+.+|.+
T Consensus 305 -rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 305 -RGELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred -CCCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 35577888887653 57899999996 688999999999898876442 23444789999999999888754
Q ss_pred -----HHHHHHHHHHhh
Q 042771 338 -----SDISVCVKDVLF 349 (436)
Q Consensus 338 -----~dl~~l~~~a~~ 349 (436)
+---.++.+|+.
T Consensus 383 ~r~lPdkaidlld~a~a 399 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGS 399 (821)
T ss_pred cccCchHHHHHHHHHHH
Confidence 333456666654
No 119
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=6.3e-16 Score=141.98 Aligned_cols=186 Identities=15% Similarity=0.202 Sum_probs=127.7
Q ss_pred cCCCCcccccc--CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 126 EKPNVKWNDVA--GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 126 ~~~~~~~~dl~--G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
..++.+|++++ +.+.+...+..+... .....+++|+||+|||||+||+++++++ +.+++.+++.
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~ 79 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAA 79 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehH
Confidence 34567899987 456677777665531 1234689999999999999999999875 6688888887
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.+... +.. .....+|+|||+|.+... . ...|+..++........+++++++..+
T Consensus 80 ~~~~~------------~~~--~~~~~~liiDdi~~l~~~---------~---~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 80 SPLLA------------FDF--DPEAELYAVDDVERLDDA---------Q---QIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred HhHHH------------Hhh--cccCCEEEEeChhhcCch---------H---HHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 65321 111 123569999999987321 1 223333333221222223444444333
Q ss_pred --CcccHHHHhhc--cceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 042771 281 --YALDQAIRRRF--DKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 281 --~~l~~~l~~Rf--~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
+.+.+.+++|| ...+.+++|+.+++..++..........++++.++.|++... -+.+++..+++....
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~-gn~~~l~~~l~~l~~ 205 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFR-RDMPSLMALLDALDR 205 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 34668899888 468999999999999999988877778889999999999655 488888888877443
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.72 E-value=3e-16 Score=169.08 Aligned_cols=213 Identities=16% Similarity=0.259 Sum_probs=156.2
Q ss_pred HHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----
Q 042771 115 LRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---- 190 (436)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---- 190 (436)
....+...+.....+-.++.++|.+...+.+.+.+.. +...+++|+||||||||++++++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 3344444555666777899999999987777776532 233689999999999999999999985
Q ss_pred ------CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 191 ------DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 191 ------~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
+.+++.++...+. ..|.|+.+..+..++..+... .+.||||||+|.|.+.+...+. ....+.|...+
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~----~d~~~~Lk~~l 298 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA----MDAGNMLKPAL 298 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch----hHHHHHhchhh
Confidence 5678888877765 467888899999999988653 5889999999999865432211 12223332222
Q ss_pred hcCCCCCCceEEEeccCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHc
Q 042771 262 QGVGHNDQKVLVLAATNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKT 332 (436)
Q Consensus 262 ~~~~~~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t 332 (436)
..+.+.+|++|+.. ..+|+++.|||. .|.++.|+.+++..|++.+... ....+++..+..++..+
T Consensus 299 -----~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls 372 (852)
T TIGR03346 299 -----ARGELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLS 372 (852)
T ss_pred -----hcCceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhc
Confidence 24568888888766 367999999996 6889999999999999876543 34456788999999888
Q ss_pred CCCCH-----HHHHHHHHHHhh
Q 042771 333 EGFSG-----SDISVCVKDVLF 349 (436)
Q Consensus 333 ~g~s~-----~dl~~l~~~a~~ 349 (436)
.+|.. .---.++++|+.
T Consensus 373 ~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 373 HRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred cccccccCCchHHHHHHHHHHH
Confidence 77643 333456666654
No 121
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.71 E-value=1.2e-15 Score=163.94 Aligned_cols=208 Identities=18% Similarity=0.255 Sum_probs=149.5
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh-----
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK----- 205 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~----- 205 (436)
.|+|++++++.|..++..... -+....+|..++||+||+|||||+||+++|+.+ ..+++.++++++...
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARV---GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhh---cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHH
Confidence 489999999999988854211 011133454678999999999999999999987 357888888776432
Q ss_pred hhchHHH-----HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceE
Q 042771 206 WMGESEK-----LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVL 272 (436)
Q Consensus 206 ~~g~~~~-----~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~ 272 (436)
..|.... ....+...++....+||+|||+|.+ ...+.+.|+..++... ....+++
T Consensus 587 l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 587 LIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred hcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 1221111 1234556666677789999999986 3456788888887421 1235788
Q ss_pred EEeccCCCCc-------------------------------------ccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC
Q 042771 273 VLAATNTPYA-------------------------------------LDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD 315 (436)
Q Consensus 273 vi~ttn~~~~-------------------------------------l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 315 (436)
||+|||.... +.|.|++|++.++.|.+.+.++..+|+...+..
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 9999885311 236788899999999999999999998876642
Q ss_pred ---------CCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 316 ---------TPHNLTESDFESLARK--TEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 316 ---------~~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
....+++..++.|+.. ...|.++.|+.+++.-...++.+..
T Consensus 735 l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~~ 786 (821)
T CHL00095 735 LFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEEV 786 (821)
T ss_pred HHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHH
Confidence 2345678889999986 3356788999999888877776654
No 122
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.71 E-value=2.9e-16 Score=166.21 Aligned_cols=205 Identities=18% Similarity=0.266 Sum_probs=145.7
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh---------
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS--------- 204 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~--------- 204 (436)
+..|++.+|+++.+++...... .......++|+||||||||++++.+|+.++.+++.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 4899999999999887643221 1123357999999999999999999999999999988665422
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc------------CCCCCCceE
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG------------VGHNDQKVL 272 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~------------~~~~~~~v~ 272 (436)
.|.|.....+...+..+....| ||+|||+|.+.+.... .....|+..++. +...-++++
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g--------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRG--------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCC--------CHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 2444444445555555443444 8999999998654321 123455555552 112336789
Q ss_pred EEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----------CCCCCChhhHHHHHHH-cCCCCHHHHH
Q 042771 273 VLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----------TPHNLTESDFESLARK-TEGFSGSDIS 341 (436)
Q Consensus 273 vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----------~~~~~~~~~~~~la~~-t~g~s~~dl~ 341 (436)
+|+|+|.. .++++|++|| .+|.+..++.++..+|++.++.. ....+++..+..|++. +..+..+.|+
T Consensus 468 ~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~Le 545 (784)
T PRK10787 468 FVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLE 545 (784)
T ss_pred EEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHH
Confidence 99999887 5999999999 48999999999999999888741 2345678888888853 4456678888
Q ss_pred HHHHHHhhhHHHhh
Q 042771 342 VCVKDVLFEPVRKT 355 (436)
Q Consensus 342 ~l~~~a~~~a~~~~ 355 (436)
..++..+...+.+.
T Consensus 546 R~I~~i~r~~l~~~ 559 (784)
T PRK10787 546 REISKLCRKAVKQL 559 (784)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777665555443
No 123
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.71 E-value=6.5e-16 Score=153.85 Aligned_cols=208 Identities=18% Similarity=0.240 Sum_probs=139.5
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEeccchhh
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSSDLVS 204 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~~~l~~ 204 (436)
...+.++|.++..+.|...+...+. ...+.+++|+||||||||++++.+++.+ +..+++++|....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3456799999988888887744221 1233579999999999999999999886 57788898864422
Q ss_pred h----------hhc--------hHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC
Q 042771 205 K----------WMG--------ESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG 265 (436)
Q Consensus 205 ~----------~~g--------~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 265 (436)
. ..+ .....+..+...... ..+.||+|||+|.+.... ....+..|+..++..
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~- 169 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEY- 169 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhcc-
Confidence 1 111 123334444444433 356799999999986211 123455555555443
Q ss_pred CCCCceEEEeccCCC---CcccHHHHhhcc-ceEEcCCCCHHHHHHHHHHHhCCC--CCCCChhhHHHHHHHcCCC--CH
Q 042771 266 HNDQKVLVLAATNTP---YALDQAIRRRFD-KRIYIPLPDLKARQHMFKVHLGDT--PHNLTESDFESLARKTEGF--SG 337 (436)
Q Consensus 266 ~~~~~v~vi~ttn~~---~~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~~--~~~~~~~~~~~la~~t~g~--s~ 337 (436)
...++.+|+++|.. ..+++.+.+||. ..+.|++++.++..+|++..+... ...+++..++.+++.+.+. ..
T Consensus 170 -~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~ 248 (394)
T PRK00411 170 -PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDA 248 (394)
T ss_pred -CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcH
Confidence 22367788888766 357788888874 578999999999999999887532 3356788899999888442 23
Q ss_pred HHHHHHHHHHhhhHHHhh
Q 042771 338 SDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 338 ~dl~~l~~~a~~~a~~~~ 355 (436)
+.+..+|..|+..+..+.
T Consensus 249 r~a~~ll~~a~~~a~~~~ 266 (394)
T PRK00411 249 RVAIDLLRRAGLIAEREG 266 (394)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 444467777776665543
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=3.3e-16 Score=164.55 Aligned_cols=207 Identities=18% Similarity=0.289 Sum_probs=152.4
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-----hhhch
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-----KWMGE 209 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-----~~~g~ 209 (436)
|+|++++++.|...+..... . +....+|..++||+||||||||++|+++|+.++.+++.++++++.. .+.|.
T Consensus 460 ViGQ~~ai~~l~~~i~~~~~--g-l~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 460 VFGQDKAIEALTEAIKMSRA--G-LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred EeCcHHHHHHHHHHHHHHhc--c-ccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 89999999999998864321 0 1112345568999999999999999999999999999999887643 22222
Q ss_pred HHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEec
Q 042771 210 SEKL-----VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVLAA 276 (436)
Q Consensus 210 ~~~~-----~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~t 276 (436)
.... ...+....+....+||||||||.+ ...+.+.|+..|+... ....+++||+|
T Consensus 537 ~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 537 PPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred CCCcccccccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 1111 123344455566789999999987 3457788888887321 12246889999
Q ss_pred cCCC-------------------------CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC---------CCCCCCCh
Q 042771 277 TNTP-------------------------YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG---------DTPHNLTE 322 (436)
Q Consensus 277 tn~~-------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~---------~~~~~~~~ 322 (436)
||.. ..+.|.|+.|++.++.|++.+.++..+|+..++. +....+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 9832 1256899999999999999999999999987663 34556788
Q ss_pred hhHHHHHHHc--CCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 323 SDFESLARKT--EGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 323 ~~~~~la~~t--~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
..++.|+... ..|.++.|+.+++.-+..++.+..
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~i 720 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 8999999754 346688999999888887777654
No 125
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.71 E-value=1.7e-15 Score=139.10 Aligned_cols=192 Identities=15% Similarity=0.208 Sum_probs=131.1
Q ss_pred CCCcccccc--CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 128 PNVKWNDVA--GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 128 ~~~~~~dl~--G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.+.+|++++ +...+.+.|+.++.. ....+++|+||+|||||++|+++++.+ +.+++++++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 446788886 366777888776531 234689999999999999999999876 468889998877
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.... ..++.... .+.+|+|||+|.+.... .....+..++..+.. .+..+|+.++..+..
T Consensus 78 ~~~~--------~~~~~~~~--~~~lLvIDdi~~l~~~~-------~~~~~L~~~l~~~~~----~~~~iIits~~~~~~ 136 (226)
T TIGR03420 78 AQAD--------PEVLEGLE--QADLVCLDDVEAIAGQP-------EWQEALFHLYNRVRE----AGGRLLIAGRAAPAQ 136 (226)
T ss_pred HHhH--------HHHHhhcc--cCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHH----cCCeEEEECCCChHH
Confidence 5321 22232222 23599999999874221 112222223333221 122344444434433
Q ss_pred c--c-HHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 283 L--D-QAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 283 l--~-~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
+ . +.+.+||. ..+.+++|+.+++..+++.+.......+++..+..|+.. .+.+.+++..+++.+...+..
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDRASLA 211 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH
Confidence 3 2 78888874 688999999999999999887766777899999999996 566999999999887654433
No 126
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.71 E-value=3.4e-16 Score=153.06 Aligned_cols=222 Identities=23% Similarity=0.314 Sum_probs=154.6
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhh-cCC-----CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhh
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFF-TGK-----RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWM 207 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~-~~~-----~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~ 207 (436)
|+|++++++.|..++.....+-... ... .....++||+||||||||++|+++|+.++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999988774332221110 000 122468999999999999999999999999999999887653 466
Q ss_pred chH-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCC----------CCCc
Q 042771 208 GES-EKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGH----------NDQK 270 (436)
Q Consensus 208 g~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~----------~~~~ 270 (436)
|.. +..+..++..+ ....++||||||+|.+..++..+.. ......+++.||..|++... +..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 653 44444444322 2346779999999999875432111 11123577888888876421 1235
Q ss_pred eEEEeccCCCC--------------------------------------------------cccHHHHhhccceEEcCCC
Q 042771 271 VLVLAATNTPY--------------------------------------------------ALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 271 v~vi~ttn~~~--------------------------------------------------~l~~~l~~Rf~~~i~~~~p 300 (436)
.++|.|+|-.. .+.|+|+.|++.++.|.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67777777510 1347788899999999999
Q ss_pred CHHHHHHHHHHH----h-------C--CCCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 301 DLKARQHMFKVH----L-------G--DTPHNLTESDFESLARK--TEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 301 ~~~~r~~il~~~----l-------~--~~~~~~~~~~~~~la~~--t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+.++..+|+... + . .....+++..++.|++. ...+.++.|+.+++..+....-+..
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 999999998652 1 1 33445678899999986 4567789999999999887777664
No 127
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.70 E-value=6.9e-15 Score=152.62 Aligned_cols=201 Identities=22% Similarity=0.300 Sum_probs=131.3
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------- 190 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---------- 190 (436)
+.+.....+.+|++++|++.+.+.+...+..+ .+.+++|+||||||||++|+++++..
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~ 209 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAE 209 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccC
Confidence 44555567889999999999988877655321 22579999999999999999998765
Q ss_pred CCceEEEeccchhh-------hhhchHHHH----HHHHHHH----------HHhcCCeEEEEccccccccCCCCCCCchH
Q 042771 191 DSTFFSISSSDLVS-------KWMGESEKL----VSSLFQM----------ARESAPSIIFIDEIDSLCGQRGEGNESEA 249 (436)
Q Consensus 191 ~~~~~~v~~~~l~~-------~~~g~~~~~----~~~~~~~----------a~~~~p~il~iDeid~l~~~~~~~~~~~~ 249 (436)
+.+|+.+++..+.. .+.+..... ....+.. ......++|||||++.|.
T Consensus 210 ~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld----------- 278 (615)
T TIGR02903 210 DAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD----------- 278 (615)
T ss_pred CCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-----------
Confidence 35789998876521 111110000 0000000 012235699999999873
Q ss_pred HHHHHHHHHHHhhcCC-------------------------CCCCceEEE-eccCCCCcccHHHHhhccceEEcCCCCHH
Q 042771 250 SRRIKTELLVQMQGVG-------------------------HNDQKVLVL-AATNTPYALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 250 ~~~~~~~ll~~l~~~~-------------------------~~~~~v~vi-~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
......|+..++... .....+++| +|++.+..+++++++||. .+.+++++.+
T Consensus 279 -~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~e 356 (615)
T TIGR02903 279 -PLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPE 356 (615)
T ss_pred -HHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCCHH
Confidence 222344444443210 011234444 466778899999999996 6789999999
Q ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 304 ARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 304 ~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
+...|++..+......++++.+..|+..+. .++....++..+.
T Consensus 357 di~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~ 399 (615)
T TIGR02903 357 DIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVY 399 (615)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHH
Confidence 999999999887666678888888988876 3444334444443
No 128
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.70 E-value=1.5e-15 Score=162.58 Aligned_cols=205 Identities=19% Similarity=0.264 Sum_probs=147.7
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh-----
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK----- 205 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~----- 205 (436)
.|+|++.+.+.+...+..... . +....+|...+||+||||||||++|+++|..+ ...++.++++++...
T Consensus 567 ~v~GQ~~Av~~v~~~i~~~~~--g-l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 567 RVIGQDHALEAIAERIRTARA--G-LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSR 643 (852)
T ss_pred eEcChHHHHHHHHHHHHHHhc--C-CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhcc
Confidence 499999999999998865311 0 11122343468999999999999999999998 457888998876432
Q ss_pred -------hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCc
Q 042771 206 -------WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQK 270 (436)
Q Consensus 206 -------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 270 (436)
|+|..+ -..+....+..+++||+||||+.. ...+.+.|+..++... ....+
T Consensus 644 l~g~~~gyvg~~~--~g~L~~~v~~~p~svvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 644 LKGSPPGYVGYGE--GGVLTEAVRRKPYSVVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred ccCCCCCcccccc--cchHHHHHHhCCCcEEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 222211 123455666778899999999975 3455677777776331 12256
Q ss_pred eEEEeccCCCC-----------------------------cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC------
Q 042771 271 VLVLAATNTPY-----------------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD------ 315 (436)
Q Consensus 271 v~vi~ttn~~~-----------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~------ 315 (436)
.+||+|||... .+.|+|++|++ +|.|.+.+.++..+|+...+..
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~ 788 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLK 788 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 88999988531 14578888997 8899999999999999776642
Q ss_pred ----CCCCCChhhHHHHHHHcCC--CCHHHHHHHHHHHhhhHHHhhh
Q 042771 316 ----TPHNLTESDFESLARKTEG--FSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 316 ----~~~~~~~~~~~~la~~t~g--~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
....+++..++.|+....+ |.++.|+.+++.-...++.+..
T Consensus 789 ~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~~~ 835 (852)
T TIGR03345 789 ENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSRQI 835 (852)
T ss_pred HhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 2245788899999998754 6789999999888877776653
No 129
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.70 E-value=2.1e-15 Score=137.06 Aligned_cols=200 Identities=22% Similarity=0.369 Sum_probs=128.0
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe
Q 042771 127 KPNVKWNDVA-G--LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS 198 (436)
Q Consensus 127 ~~~~~~~dl~-G--~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~ 198 (436)
.|..+|++++ | ...+..........+ ......++||||+|+|||+|++++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3677899985 5 445555555544332 1233569999999999999999999874 57799999
Q ss_pred ccchhhhhhchHHH-HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 199 SSDLVSKWMGESEK-LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 199 ~~~l~~~~~g~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
+.++...+...... .+..+....+ ...+|+|||++.+.++ ......|...++.+... ++.+|+++.
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~~--~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~~~-~k~li~ts~ 138 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRLR--SADLLIIDDIQFLAGK----------QRTQEELFHLFNRLIES-GKQLILTSD 138 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHC--TSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHHHT-TSEEEEEES
T ss_pred HHHHHHHHHHHHHcccchhhhhhhh--cCCEEEEecchhhcCc----------hHHHHHHHHHHHHHHhh-CCeEEEEeC
Confidence 98887654332211 1222222223 3469999999998422 12233444444333222 345565555
Q ss_pred CCCC---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 278 NTPY---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 278 n~~~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
..|. .+++.+.+||. ..+.+..|+.+.|..|++..+......++++.++.|++...+ +.++|..+++.....
T Consensus 139 ~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 139 RPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp S-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred CCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 6664 46789999986 477888999999999999999999999999999999999875 778888888776544
No 130
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=6.5e-16 Score=159.95 Aligned_cols=192 Identities=19% Similarity=0.251 Sum_probs=141.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce--------
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF-------- 194 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~-------- 194 (436)
+..++.+.+|++|+|++.+++.|..++... ..++.+||+||+|+|||++|+++|+.+++..
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 457889999999999999999998877531 2335689999999999999999999986432
Q ss_pred -----------------EEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 195 -----------------FSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 195 -----------------~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
+.++.... ..-..++.+.+.+. .....||||||+|.|. ...
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~------~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a 136 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASH------TSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAA 136 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEecccc------CCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHH
Confidence 11221100 11122344433332 2345699999999873 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|++.++.. ...+++|++++....+.+.+++||. .+.|..++..+...++...+...+..++++.+..|+..+.
T Consensus 137 ~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~ 212 (585)
T PRK14950 137 FNALLKTLEEP---PPHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAAT 212 (585)
T ss_pred HHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788888753 3456777777778888899999994 7889999999999999988887777789999999999998
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +.+++...++...
T Consensus 213 G-dlr~al~~LekL~ 226 (585)
T PRK14950 213 G-SMRDAENLLQQLA 226 (585)
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 6777766666543
No 131
>PRK08727 hypothetical protein; Validated
Probab=99.69 E-value=7.8e-15 Score=134.80 Aligned_cols=175 Identities=20% Similarity=0.240 Sum_probs=114.0
Q ss_pred CCCCccccccCcH-HHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 127 KPNVKWNDVAGLE-SAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 127 ~~~~~~~dl~G~~-~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.+..+|+++++.. .....+...... .....++|+||+|||||+|+.++++++ +..+++++..++
T Consensus 13 ~~~~~f~~f~~~~~n~~~~~~~~~~~------------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 13 PSDQRFDSYIAAPDGLLAQLQALAAG------------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CCcCChhhccCCcHHHHHHHHHHHhc------------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 4556888886544 333333322210 122459999999999999999998775 556677776553
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.. .+...++... ...+|+|||++.+.... .....+-.+++.+. . .+..+|+.+...|..
T Consensus 81 ~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~---~-~~~~vI~ts~~~p~~ 139 (233)
T PRK08727 81 AG--------RLRDALEALE--GRSLVALDGLESIAGQR-------EDEVALFDFHNRAR---A-AGITLLYTARQMPDG 139 (233)
T ss_pred hh--------hHHHHHHHHh--cCCEEEEeCcccccCCh-------HHHHHHHHHHHHHH---H-cCCeEEEECCCChhh
Confidence 32 2223343333 33599999999875332 11222223333332 1 222234444445544
Q ss_pred ---ccHHHHhhc--cceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 283 ---LDQAIRRRF--DKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 283 ---l~~~l~~Rf--~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
+++++++|| ...+.++.|+.+++..|++.+.......++++.+..|++.+.|
T Consensus 140 l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r 196 (233)
T PRK08727 140 LALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER 196 (233)
T ss_pred hhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 479999996 4688999999999999999977767788899999999999886
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.69 E-value=5.3e-15 Score=148.06 Aligned_cols=201 Identities=18% Similarity=0.245 Sum_probs=132.3
Q ss_pred CCcccccc-CcHH--HHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEecc
Q 042771 129 NVKWNDVA-GLES--AKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSS 200 (436)
Q Consensus 129 ~~~~~dl~-G~~~--~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~~ 200 (436)
..+|++++ |... +...+..++.. ......+++|||++|+|||+|++++++++ +..++++++.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~----------~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~ 180 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKN----------PGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD 180 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhC----------cCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH
Confidence 46898876 4322 33333333221 11234679999999999999999999965 4688899998
Q ss_pred chhhhhhchHHH---HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 201 DLVSKWMGESEK---LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 201 ~l~~~~~g~~~~---~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
++...+...... .+..+.... ....+|+|||++.+.++. .....+-.+++.+. . .+..+|+.+.
T Consensus 181 ~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l~~k~-------~~~e~lf~l~N~~~---~-~~k~iIltsd 247 (450)
T PRK14087 181 EFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFLSYKE-------KTNEIFFTIFNNFI---E-NDKQLFFSSD 247 (450)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccccCCH-------HHHHHHHHHHHHHH---H-cCCcEEEECC
Confidence 887665433221 122222222 245699999999874321 12222333333332 1 2233444444
Q ss_pred CCCC---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCC--CCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 278 NTPY---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPH--NLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 278 n~~~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~--~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
..|. .+++.+++||. ..+.+..|+.++|.+|++..+..... .++++.+..|+..+.| +++.+..+|..+...
T Consensus 248 ~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~ 326 (450)
T PRK14087 248 KSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFW 326 (450)
T ss_pred CCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHH
Confidence 4443 45789999985 66778899999999999999876543 5899999999999987 788888888887755
Q ss_pred HHH
Q 042771 351 PVR 353 (436)
Q Consensus 351 a~~ 353 (436)
+..
T Consensus 327 a~~ 329 (450)
T PRK14087 327 SQQ 329 (450)
T ss_pred Hhc
Confidence 444
No 133
>PRK05642 DNA replication initiation factor; Validated
Probab=99.68 E-value=6.9e-15 Score=135.16 Aligned_cols=161 Identities=14% Similarity=0.199 Sum_probs=112.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 242 (436)
...++||||+|||||+|++++++++ +..+++++..++... ...+.+..... .+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~--d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNLEQY--ELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhhhhC--CEEEEechhhhcCCh-
Confidence 3679999999999999999999864 578888888776542 12223333333 499999999874321
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC--c-ccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCC
Q 042771 243 EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY--A-LDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTP 317 (436)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~--~-l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~ 317 (436)
.. ...|+..++... ..+..++++++..|. . ..+.+++||. ..+.+..|+.+++..+++.......
T Consensus 114 ------~~---~~~Lf~l~n~~~-~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 114 ------DW---EEALFHLFNRLR-DSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ------HH---HHHHHHHHHHHH-hcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 11 223333333321 233456666665553 3 3689999984 5677889999999999997666667
Q ss_pred CCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 318 HNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 318 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
..++++.++.|++...+ +.+.+..+++...
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~ 213 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLERLD 213 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 78899999999999986 6666666666554
No 134
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.68 E-value=3.8e-15 Score=133.54 Aligned_cols=194 Identities=23% Similarity=0.318 Sum_probs=140.2
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD 201 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~ 201 (436)
....++.+++|+|.+..|+.|.+.....+. ..|..++||||++|||||++++++.+++ |..++.|...+
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~ 90 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKED 90 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHH
Confidence 455689999999999999999887754332 3466899999999999999999999876 67788888776
Q ss_pred hhhhhhchHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-CCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-HNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~v~vi~ttn~ 279 (436)
+.. +..+++..+. ..+-|||+||+-- .. ...-...|-..|+|.. ..+.+|+|.+|+|.
T Consensus 91 L~~---------l~~l~~~l~~~~~kFIlf~DDLsF--e~---------~d~~yk~LKs~LeGgle~~P~NvliyATSNR 150 (249)
T PF05673_consen 91 LGD---------LPELLDLLRDRPYKFILFCDDLSF--EE---------GDTEYKALKSVLEGGLEARPDNVLIYATSNR 150 (249)
T ss_pred hcc---------HHHHHHHHhcCCCCEEEEecCCCC--CC---------CcHHHHHHHHHhcCccccCCCcEEEEEecch
Confidence 642 3444555442 2456999998641 11 1122455666666543 45678999999987
Q ss_pred CCccc-----------------------HHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHH----HHc
Q 042771 280 PYALD-----------------------QAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLA----RKT 332 (436)
Q Consensus 280 ~~~l~-----------------------~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la----~~t 332 (436)
-..++ -+|-.||...+.|..|+.++-.+|+++++......++.+.+..-| ..-
T Consensus 151 RHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~r 230 (249)
T PF05673_consen 151 RHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRR 230 (249)
T ss_pred hhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHc
Confidence 73222 134459999999999999999999999998888887765554433 344
Q ss_pred CCCCHHHHHHHHHH
Q 042771 333 EGFSGSDISVCVKD 346 (436)
Q Consensus 333 ~g~s~~dl~~l~~~ 346 (436)
.|.||+--.+.++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 56777766666544
No 135
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.68 E-value=1.2e-14 Score=156.86 Aligned_cols=209 Identities=19% Similarity=0.298 Sum_probs=151.6
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh---
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW--- 206 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~--- 206 (436)
..|+|++.+.+.+...+..... -+....+|...+||+||+|||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhc---cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 4599999999999998864311 011123455679999999999999999999987 4689999988764321
Q ss_pred --hchHHH-----HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCce
Q 042771 207 --MGESEK-----LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKV 271 (436)
Q Consensus 207 --~g~~~~-----~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v 271 (436)
.|.... ....+....+....+||+||||+.+ ...+.+.|+..++.-. ....++
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka------------~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~ 709 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKA------------HPDVFNVLLQVLDDGRLTDGQGRTVDFRNT 709 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccC------------CHHHHHHHHHHHhcCceecCCCeEEecCCc
Confidence 111111 1123445556666789999999986 3456777777775321 123467
Q ss_pred EEEeccCCCC-------------------------cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------CC
Q 042771 272 LVLAATNTPY-------------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------TP 317 (436)
Q Consensus 272 ~vi~ttn~~~-------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~ 317 (436)
+||+|||... .+.|.|+.|++.++.|.+++.+...+|+...+.. ..
T Consensus 710 iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~ 789 (852)
T TIGR03346 710 VIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKIT 789 (852)
T ss_pred EEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 8999998732 1347788899999999999999999998776641 23
Q ss_pred CCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhh
Q 042771 318 HNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 318 ~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
..+++..++.|++... .+..+.|+.+++..+..++.+..
T Consensus 790 l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 790 LELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred ecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 5678999999999855 68899999999999988877654
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.9e-15 Score=156.21 Aligned_cols=193 Identities=17% Similarity=0.223 Sum_probs=143.8
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
++..++.+.+|++|+|++.+++.|...+.. ...++.+|||||+|+|||++|+.+|+.+.+.
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~-----------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIAT-----------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 345688999999999999999999988753 2334679999999999999999999987642
Q ss_pred -----------------eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHH
Q 042771 194 -----------------FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRR 252 (436)
Q Consensus 194 -----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~ 252 (436)
++.+++... .....++.+...+.. ....|++|||+|.|. ..
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~ 136 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QA 136 (614)
T ss_pred CCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HH
Confidence 222222110 112335555544432 234599999999883 23
Q ss_pred HHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 253 IKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 253 ~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
..+.|+..|+. .+..+++|++|+....+.+++++|| ..+.|..++.++...+++..+...+..+++..+..|+..+
T Consensus 137 a~naLLK~LEe---pp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s 212 (614)
T PRK14971 137 AFNAFLKTLEE---PPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKA 212 (614)
T ss_pred HHHHHHHHHhC---CCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 46788888885 3455667777777889999999999 5899999999999999998888778888899999999999
Q ss_pred CCCCHHHHHHHHHHHh
Q 042771 333 EGFSGSDISVCVKDVL 348 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~ 348 (436)
.| +.+++...+....
T Consensus 213 ~g-dlr~al~~Lekl~ 227 (614)
T PRK14971 213 DG-GMRDALSIFDQVV 227 (614)
T ss_pred CC-CHHHHHHHHHHHH
Confidence 76 5556655555543
No 137
>PRK06620 hypothetical protein; Validated
Probab=99.68 E-value=6.4e-15 Score=133.15 Aligned_cols=176 Identities=14% Similarity=0.188 Sum_probs=116.6
Q ss_pred cCCCCccccccC---cHHHHHHHHHHHhccCCChhhhcCCCCC-CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 126 EKPNVKWNDVAG---LESAKQALQEAVILPVKFPQFFTGKRQP-WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 126 ~~~~~~~~dl~G---~~~~k~~L~~~~~~~~~~~~~~~~~~~~-~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
..+..+|++++- +..+...+..+...+ +..+ .+.++||||||||||||++++++..+..++. ...
T Consensus 9 ~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~ 77 (214)
T PRK06620 9 TSSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIF 77 (214)
T ss_pred CCCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhh
Confidence 346668888754 334555666544211 1122 2679999999999999999999987753322 111
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 281 (436)
.. ...+ ....+|+|||||.+ + ...+-.+++.+. ..+..++|+++..|.
T Consensus 78 ~~-----------~~~~-----~~~d~lliDdi~~~--------~----~~~lf~l~N~~~----e~g~~ilits~~~p~ 125 (214)
T PRK06620 78 FN-----------EEIL-----EKYNAFIIEDIENW--------Q----EPALLHIFNIIN----EKQKYLLLTSSDKSR 125 (214)
T ss_pred hc-----------hhHH-----hcCCEEEEeccccc--------h----HHHHHHHHHHHH----hcCCEEEEEcCCCcc
Confidence 10 0111 12369999999954 1 112223333333 234466666665554
Q ss_pred --cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 282 --ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 282 --~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
.+ +++++|+. .++.+..|+.+.+..+++..+......++++.++.|+....+ +.+.+..++..
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 36 89999985 368899999999999999988877788999999999999986 55566666555
No 138
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.67 E-value=6.6e-16 Score=134.92 Aligned_cols=192 Identities=17% Similarity=0.204 Sum_probs=139.2
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-C----CceE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-D----STFF 195 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-~----~~~~ 195 (436)
..|+.+|.+..+.||||+++....|.-.... ....+++|.|||||||||-+.++|+++ | --++
T Consensus 15 l~wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vL 82 (333)
T KOG0991|consen 15 LPWVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVL 82 (333)
T ss_pred chHHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhh
Confidence 3488899999999999999999999876543 223589999999999999999999997 3 2467
Q ss_pred EEeccchhhhhhchHHHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCce
Q 042771 196 SISSSDLVSKWMGESEKLVSSLFQMARES----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKV 271 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 271 (436)
.+|+++-.+- ..-..--..|..-+-. .-.||++||+|++... .+..|-..|+-. .+..
T Consensus 83 ELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g------------AQQAlRRtMEiy---S~tt 144 (333)
T KOG0991|consen 83 ELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG------------AQQALRRTMEIY---SNTT 144 (333)
T ss_pred hccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH------------HHHHHHHHHHHH---cccc
Confidence 7888765432 1111222334333222 2249999999998432 234444445433 2235
Q ss_pred EEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 272 LVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 272 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
.+..+||....+-+.+.+||. .+.+...+......-+....+.....++++.++.+...++| |+++.++..
T Consensus 145 RFalaCN~s~KIiEPIQSRCA-iLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalNnL 215 (333)
T KOG0991|consen 145 RFALACNQSEKIIEPIQSRCA-ILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALNNL 215 (333)
T ss_pred hhhhhhcchhhhhhhHHhhhH-hhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHHHH
Confidence 578889999999999999994 77777777777666666666777788899999999999998 888777654
No 139
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.67 E-value=3.3e-15 Score=158.86 Aligned_cols=208 Identities=20% Similarity=0.294 Sum_probs=153.4
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh-----hhc
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK-----WMG 208 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~-----~~g 208 (436)
.|+|++++++.|...+..... .+....+|..++||+||||||||++|+++|+.++.+++.++++++... ..|
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~---g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRA---GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 489999999999888754211 111123454579999999999999999999999999999998876432 122
Q ss_pred hHH-----HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEe
Q 042771 209 ESE-----KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVLA 275 (436)
Q Consensus 209 ~~~-----~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ 275 (436)
... .....+...++....+||+|||||.+ ...+.+.|+..++... ....+++||+
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 111 11233455556677789999999987 2456778888877431 1234678999
Q ss_pred ccCCCC-------------------------cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------CCCCCC
Q 042771 276 ATNTPY-------------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------TPHNLT 321 (436)
Q Consensus 276 ttn~~~-------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~~~~~ 321 (436)
|||... .+.|.|+.||+.++.|.+.+.++..+|++..+.. ....++
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~ 679 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELT 679 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeC
Confidence 998641 2468899999999999999999999999887742 235678
Q ss_pred hhhHHHHHHH--cCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 322 ESDFESLARK--TEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 322 ~~~~~~la~~--t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+..++.|+.. ...+.++.|+.+++..+..++.+..
T Consensus 680 ~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~~~ 716 (731)
T TIGR02639 680 DDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSDEI 716 (731)
T ss_pred HHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHHHH
Confidence 8899999985 4557789999999998888776654
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.67 E-value=7.8e-15 Score=141.87 Aligned_cols=209 Identities=18% Similarity=0.315 Sum_probs=142.0
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEecc
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSS 200 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~~ 200 (436)
-.|..+|++++.-..-..........+ .....+...++||||.|+|||+|++|++++. +..+++++..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va-------~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVA-------ENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHH-------hccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 456678888765333333222222111 1112245789999999999999999999986 3468888888
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.+...++......-..-|..-. .-.+++|||++.+.++. .....|...+..+. ..++.+|+.+...|
T Consensus 153 ~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~----------~~qeefFh~FN~l~-~~~kqIvltsdr~P 219 (408)
T COG0593 153 DFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE----------RTQEEFFHTFNALL-ENGKQIVLTSDRPP 219 (408)
T ss_pred HHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh----------hHHHHHHHHHHHHH-hcCCEEEEEcCCCc
Confidence 8877665443332223344443 33699999999986542 11333333333332 23345666666777
Q ss_pred Ccc---cHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 281 YAL---DQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 281 ~~l---~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
..+ .+.|++||. ..+.+.+|+.+.|..||+......+..++++.+..|+..... +.++|..++......+....
T Consensus 220 ~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~~~~ 298 (408)
T COG0593 220 KELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFALFTK 298 (408)
T ss_pred hhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHhcC
Confidence 644 599999986 566788999999999999999999999999999999999874 67788888777766654443
No 141
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.66 E-value=1.6e-14 Score=133.71 Aligned_cols=114 Identities=17% Similarity=0.190 Sum_probs=85.9
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC------------CCcccHHHHhhccc
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT------------PYALDQAIRRRFDK 293 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~------------~~~l~~~l~~Rf~~ 293 (436)
|+||||||+|.| .-+.+..|-..|+. .-.+ ++|.+||. |+.++..|++|+ .
T Consensus 292 pGVLFIDEvHmL------------DIE~FsFlnrAlEs---e~aP-Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-l 354 (450)
T COG1224 292 PGVLFIDEVHML------------DIECFSFLNRALES---ELAP-IIILATNRGMTKIRGTDIESPHGIPLDLLDRL-L 354 (450)
T ss_pred cceEEEechhhh------------hHHHHHHHHHHhhc---ccCc-EEEEEcCCceeeecccCCcCCCCCCHhhhhhe-e
Confidence 679999999977 22334444444542 2233 45555554 478899999999 6
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 294 RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 294 ~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+|...+++.++.++|++.......+.++++.++.|+.....-|-+--.+|+.-|...|-++..
T Consensus 355 II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~ 417 (450)
T COG1224 355 IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGS 417 (450)
T ss_pred EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCC
Confidence 889999999999999999999999999999999999988776766666777777766666553
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.63 E-value=5.3e-14 Score=151.23 Aligned_cols=210 Identities=18% Similarity=0.266 Sum_probs=145.6
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh--
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW-- 206 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~-- 206 (436)
...|+|++.+.+.|...+..... -.....+|...+||+||+|||||++|+++|+.+ +.+++.++++++....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~ 643 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSV 643 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHh---cccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhH
Confidence 45699999999999988854210 001122343579999999999999999999987 4578999988764321
Q ss_pred ---hchHHH-----HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCc
Q 042771 207 ---MGESEK-----LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQK 270 (436)
Q Consensus 207 ---~g~~~~-----~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 270 (436)
.|.... ....+....+....+||+|||++.+ ...+++.|+..++... ....+
T Consensus 644 ~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka------------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn 711 (857)
T PRK10865 644 SRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA------------HPDVFNILLQVLDDGRLTDGQGRTVDFRN 711 (857)
T ss_pred HHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhC------------CHHHHHHHHHHHhhCceecCCceEEeecc
Confidence 111100 0112333444555589999999976 2345677777775321 12345
Q ss_pred eEEEeccCCC-------------------------CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------C
Q 042771 271 VLVLAATNTP-------------------------YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------T 316 (436)
Q Consensus 271 v~vi~ttn~~-------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~ 316 (436)
.+||+|||.. ..+.|+|++|++.++.|.+++.+....|++.++.. .
T Consensus 712 ~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi 791 (857)
T PRK10865 712 TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGY 791 (857)
T ss_pred cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 6788999873 12457899999999999999999999988876643 2
Q ss_pred CCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhh
Q 042771 317 PHNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 317 ~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
...+++..++.|+.... .|.++.|+.+++.-+...+.+..
T Consensus 792 ~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~i 833 (857)
T PRK10865 792 EIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQI 833 (857)
T ss_pred cCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHHH
Confidence 34578999999998542 35678999999988887776654
No 143
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.63 E-value=3.5e-14 Score=137.38 Aligned_cols=195 Identities=18% Similarity=0.160 Sum_probs=133.9
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------eEEE-
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------FFSI- 197 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------~~~v- 197 (436)
...|..+++|+|++.+++.|..++.. .+.++.+||+||+|+|||++|+.+|+.+.+. ....
T Consensus 16 ~~~P~~~~~l~Gh~~a~~~L~~a~~~-----------grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 16 VPSPSENTRLFGHEEAEAFLAQAYRE-----------GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCCchhhccCcHHHHHHHHHHHHc-----------CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 35778999999999999999998754 2344679999999999999999999997551 1000
Q ss_pred e---cc-----------chh---hhh-h-------chHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCch
Q 042771 198 S---SS-----------DLV---SKW-M-------GESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESE 248 (436)
Q Consensus 198 ~---~~-----------~l~---~~~-~-------g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~ 248 (436)
. |. ++. ..+ . .-.-..++.+.... ..+...|++|||+|.|.
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 0 10 000 000 0 00112233333332 23355699999999983
Q ss_pred HHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHH
Q 042771 249 ASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESL 328 (436)
Q Consensus 249 ~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~l 328 (436)
....+.|++.++. +..++++|..|+.+..+.+.+++|| ..+.|++|+.++...++........ +++..+..+
T Consensus 155 --~~aanaLLk~LEE---pp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i 226 (351)
T PRK09112 155 --RNAANAILKTLEE---PPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG--SDGEITEAL 226 (351)
T ss_pred --HHHHHHHHHHHhc---CCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHH
Confidence 3335778888885 3455666667788899999999999 6999999999999999988543222 567778889
Q ss_pred HHHcCCCCHHHHHHHHHHHhhh
Q 042771 329 ARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~ 350 (436)
+..+.| +++....++......
T Consensus 227 ~~~s~G-~pr~Al~ll~~~~~~ 247 (351)
T PRK09112 227 LQRSKG-SVRKALLLLNYGGLE 247 (351)
T ss_pred HHHcCC-CHHHHHHHHhcCcHH
Confidence 888877 555555555554443
No 144
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.62 E-value=1.7e-14 Score=144.45 Aligned_cols=211 Identities=22% Similarity=0.292 Sum_probs=153.3
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccC-----------------CChhhhcC-----CCCCCcceEEecCCcchH
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPV-----------------KFPQFFTG-----KRQPWRAFLLYGPPGTGK 179 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~-----------------~~~~~~~~-----~~~~~~~iLl~GppGtGK 179 (436)
.|+.++.+..|.||.|.+.+-+.+..++...- ...+.+.. .+++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 78889999999999999999999988885420 01111211 233446799999999999
Q ss_pred HHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHH--------hcCCeEEEEccccccccCCCCCCCchHHH
Q 042771 180 SYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMAR--------ESAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 180 T~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~--------~~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
||||+.+|+.+|..++.+|+++-.+. ..++.....|. ...|.+|+|||||-- ..
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~------~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa------------~~ 401 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTA------PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA------------PR 401 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccH------HHHHHHHHHHHhhccccccCCCcceEEEecccCC------------cH
Confidence 99999999999999999999986532 22222222221 247899999999942 12
Q ss_pred HHHHHHHHHhhc-----CCCCC-------------CceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHH
Q 042771 252 RIKTELLVQMQG-----VGHND-------------QKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKV 311 (436)
Q Consensus 252 ~~~~~ll~~l~~-----~~~~~-------------~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~ 311 (436)
..+..++..+.. ..... -.-.|||.||+.. -|+|+. -|..+++|.+|......+-|+.
T Consensus 402 ~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~ 479 (877)
T KOG1969|consen 402 AAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNE 479 (877)
T ss_pred HHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHH
Confidence 334444444430 00111 1235899999866 456654 6888999999999999999999
Q ss_pred HhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 312 HLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 312 ~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
.+...++..+...+..|++.+++ ||+..++..-+-+....+
T Consensus 480 IC~rE~mr~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 480 ICHRENMRADSKALNALCELTQN----DIRSCINTLQFLASNVDR 520 (877)
T ss_pred HHhhhcCCCCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhccc
Confidence 99888888889999999999988 999999998877665443
No 145
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.62 E-value=1.3e-14 Score=138.75 Aligned_cols=163 Identities=21% Similarity=0.299 Sum_probs=104.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-------C--ceEEE
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-------S--TFFSI 197 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-------~--~~~~v 197 (436)
..+..|++|+|++++++.|.-.+..+ ...++||+|+||||||++|+++++.+. + ++..+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 35678999999999999988654321 125899999999999999999999883 2 11111
Q ss_pred ecc-ch--------hhh---h----hchHH-HHHHH-HHHHH-------------HhcCCeEEEEccccccccCCCCCCC
Q 042771 198 SSS-DL--------VSK---W----MGESE-KLVSS-LFQMA-------------RESAPSIIFIDEIDSLCGQRGEGNE 246 (436)
Q Consensus 198 ~~~-~l--------~~~---~----~g~~~-~~~~~-~~~~a-------------~~~~p~il~iDeid~l~~~~~~~~~ 246 (436)
.+. ++ ... | .+.++ ..+.. .+..+ .....++|||||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 100 00 000 0 00000 00100 00100 01123599999999873
Q ss_pred chHHHHHHHHHHHHhhcCC----------CCCCceEEEeccCCCC-cccHHHHhhccceEEcCCCCH-HHHHHHHHHHh
Q 042771 247 SEASRRIKTELLVQMQGVG----------HNDQKVLVLAATNTPY-ALDQAIRRRFDKRIYIPLPDL-KARQHMFKVHL 313 (436)
Q Consensus 247 ~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~~-~~r~~il~~~l 313 (436)
..+++.|+..|+... ....++++++|+|..+ .++++++.||...+.+++|.. ++|.+|+....
T Consensus 142 ----~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 142 ----DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred ----HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 345666666665321 1234678888888654 689999999999999998876 89999998754
No 146
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.62 E-value=4.3e-15 Score=109.71 Aligned_cols=72 Identities=43% Similarity=0.660 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDG 76 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~~ 76 (436)
.+++|++++++|++.|+.|+|++|+.+|.+|+++|+.+++.++++..|+.+++++.+|++|||+||..+...
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~~~ 73 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIASD 73 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999999999999999999999999999999999999998653
No 147
>PRK09087 hypothetical protein; Validated
Probab=99.61 E-value=3e-14 Score=129.89 Aligned_cols=177 Identities=19% Similarity=0.201 Sum_probs=114.3
Q ss_pred CCCCccccccC---cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 127 KPNVKWNDVAG---LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 127 ~~~~~~~dl~G---~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.+..+|++++. +..+...+..+. ..+.+.++|+||+|+|||||++++++..+.. +++...+.
T Consensus 15 ~~~~~~~~Fi~~~~N~~a~~~l~~~~-------------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~ 79 (226)
T PRK09087 15 DPAYGRDDLLVTESNRAAVSLVDHWP-------------NWPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG 79 (226)
T ss_pred CCCCChhceeecCchHHHHHHHHhcc-------------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc
Confidence 35568999874 334444433311 0122459999999999999999999887654 44433332
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC--C
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP--Y 281 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~--~ 281 (436)
..+ +..... .+|+|||++.+.. .. ..|+..++.+. ..++.+||+++..| |
T Consensus 80 ~~~-----------~~~~~~---~~l~iDDi~~~~~------~~-------~~lf~l~n~~~-~~g~~ilits~~~p~~~ 131 (226)
T PRK09087 80 SDA-----------ANAAAE---GPVLIEDIDAGGF------DE-------TGLFHLINSVR-QAGTSLLMTSRLWPSSW 131 (226)
T ss_pred hHH-----------HHhhhc---CeEEEECCCCCCC------CH-------HHHHHHHHHHH-hCCCeEEEECCCChHHh
Confidence 211 111111 4899999997621 11 12333332221 22345566565544 3
Q ss_pred cc-cHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 282 AL-DQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 282 ~l-~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
.. .+.+++||. ..+.+..|+.+++..+++..+......++++.++.|++...+ +.+.+..+++..
T Consensus 132 ~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L 199 (226)
T PRK09087 132 NVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRL 199 (226)
T ss_pred ccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 43 688999985 788999999999999999999888888999999999999885 444444444443
No 148
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=7.9e-14 Score=135.39 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=142.9
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-----eEEEeccchhhhhh
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-----FFSISSSDLVSKWM 207 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-----~~~v~~~~l~~~~~ 207 (436)
+.+.+.++..+.|...+...+. + ..+.++++|||||||||.+++.+++++... ++++||..+.+.+.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~-------~-~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~ 88 (366)
T COG1474 17 EELPHREEEINQLASFLAPALR-------G-ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQ 88 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhc-------C-CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHH
Confidence 3388999999999887655443 2 233569999999999999999999987433 89999987654321
Q ss_pred ----------------chHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc
Q 042771 208 ----------------GESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 208 ----------------g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
-........+++.... ....||++||+|.|..+.+ .++-.|+..... ...+
T Consensus 89 i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~---~~~~ 156 (366)
T COG1474 89 VLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGE---NKVK 156 (366)
T ss_pred HHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccc---ccee
Confidence 1122333444444433 3556999999999975531 344555544432 2456
Q ss_pred eEEEeccCCCC---cccHHHHhhcc-ceEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHcCCC--CHHHHHH
Q 042771 271 VLVLAATNTPY---ALDQAIRRRFD-KRIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKTEGF--SGSDISV 342 (436)
Q Consensus 271 v~vi~ttn~~~---~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t~g~--s~~dl~~ 342 (436)
+.+|+.+|..+ .+++.+.++|. ..|.||+++.++...|+...... ....+++..+..+|..+... ..+---.
T Consensus 157 v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aid 236 (366)
T COG1474 157 VSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAID 236 (366)
T ss_pred EEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHH
Confidence 88999999874 78899999764 56899999999999999988763 44556777777777554322 3444457
Q ss_pred HHHHHhhhHHHhhh
Q 042771 343 CVKDVLFEPVRKTQ 356 (436)
Q Consensus 343 l~~~a~~~a~~~~~ 356 (436)
+|+.|+..|-++..
T Consensus 237 ilr~A~eiAe~~~~ 250 (366)
T COG1474 237 ILRRAGEIAEREGS 250 (366)
T ss_pred HHHHHHHHHHhhCC
Confidence 78888888776654
No 149
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.60 E-value=1.8e-13 Score=133.05 Aligned_cols=187 Identities=20% Similarity=0.201 Sum_probs=128.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce------------
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF------------ 194 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~------------ 194 (436)
..|.++++|+|++.+++.|..++.. .+.++.+||+||+|+||+++|.++|+.+-+.-
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS-----------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 5678999999999999999988754 23447899999999999999999999873311
Q ss_pred ----------------------EEEecc--chhhhh-hchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCC
Q 042771 195 ----------------------FSISSS--DLVSKW-MGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGN 245 (436)
Q Consensus 195 ----------------------~~v~~~--~l~~~~-~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~ 245 (436)
+.+... +-..+. ..-.-..++.+...+ ....+.|++|||+|.+
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m-------- 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM-------- 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc--------
Confidence 111110 000000 000112244444333 2346789999999987
Q ss_pred CchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhH
Q 042771 246 ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDF 325 (436)
Q Consensus 246 ~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~ 325 (436)
.....+.|++.++. +...+++|.+|+.++.+.+.+++|| ..+.|++|+.++..+++...... .++..+
T Consensus 154 ----~~~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~----~~~~~~ 221 (365)
T PRK07471 154 ----NANAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD----LPDDPR 221 (365)
T ss_pred ----CHHHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc----CCHHHH
Confidence 23456788888874 4456778888998999999999999 58999999999999999876422 234445
Q ss_pred HHHHHHcCCCCHHHHHHHHH
Q 042771 326 ESLARKTEGFSGSDISVCVK 345 (436)
Q Consensus 326 ~~la~~t~g~s~~dl~~l~~ 345 (436)
..++..+.| ++.....+++
T Consensus 222 ~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHcCC-CHHHHHHHhc
Confidence 677778876 4444444443
No 150
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=8.2e-14 Score=134.07 Aligned_cols=172 Identities=15% Similarity=0.254 Sum_probs=123.5
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------eEEEeccch
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST--------FFSISSSDL 202 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~--------~~~v~~~~l 202 (436)
+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+++|+.+-+. ++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 699999999999999987743 2344678999999999999999999987432 22332210
Q ss_pred hhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q 042771 203 VSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
+.. -.-..++.+.+.+ ......|++||++|.+. ....+.|++.++. ++..+++|.+|+
T Consensus 70 -~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~------------~~a~naLLK~LEe---pp~~t~~il~~~ 131 (313)
T PRK05564 70 -KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT------------EQAQNAFLKTIEE---PPKGVFIILLCE 131 (313)
T ss_pred -CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcC------------HHHHHHHHHHhcC---CCCCeEEEEEeC
Confidence 110 1112344444433 23355699999999872 3346788888884 455667777778
Q ss_pred CCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCH
Q 042771 279 TPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 279 ~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
.++.+.+++++|| ..+.|+.|+.++...++...+. .+++..+..++..+.|-.+
T Consensus 132 ~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 132 NLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPG 185 (313)
T ss_pred ChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHH
Confidence 8899999999999 5999999999998888876653 2467778888888877433
No 151
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.58 E-value=1.6e-13 Score=128.41 Aligned_cols=132 Identities=23% Similarity=0.311 Sum_probs=92.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccc------hhhhhhchHHH-HH--------------------HHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD------LVSKWMGESEK-LV--------------------SSLFQ 219 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~------l~~~~~g~~~~-~~--------------------~~~~~ 219 (436)
.++||+||||||||++|+++|+.+|.+++.+++.. +.+.+.+.... .+ ..++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 57999999999999999999999999999998753 22222211111 01 11222
Q ss_pred HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-------------CCCCceEEEeccCCC-----C
Q 042771 220 MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-------------HNDQKVLVLAATNTP-----Y 281 (436)
Q Consensus 220 ~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------------~~~~~v~vi~ttn~~-----~ 281 (436)
.+. .+.+|+|||++.+. ..+.+.|+..++... ..++++.||+|+|.. .
T Consensus 102 A~~--~g~~lllDEi~r~~------------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVR--EGFTLVYDEFTRSK------------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHH--cCCEEEEcchhhCC------------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 222 33699999999862 334566666665321 012357799999976 3
Q ss_pred cccHHHHhhccceEEcCCCCHHHHHHHHHHHh
Q 042771 282 ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHL 313 (436)
Q Consensus 282 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l 313 (436)
.+++++++|| ..+.+++|+.++..+|+...+
T Consensus 168 ~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 6689999999 689999999999999998875
No 152
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=1.7e-13 Score=131.29 Aligned_cols=238 Identities=17% Similarity=0.181 Sum_probs=140.5
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-------CceEEEe
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-------STFFSIS 198 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-------~~~~~v~ 198 (436)
..+...|++|+|++++|..|...+..| ...++||.||+|||||++|++++..+. .+|. ..
T Consensus 10 ~~~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~ 76 (350)
T CHL00081 10 ERPVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SH 76 (350)
T ss_pred cCCCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CC
Confidence 345679999999999999998877654 225899999999999999999987763 2221 00
Q ss_pred c-------cchhhh-------------------hhchHHHH-H-----HHHHHHH---------HhcCCeEEEEcccccc
Q 042771 199 S-------SDLVSK-------------------WMGESEKL-V-----SSLFQMA---------RESAPSIIFIDEIDSL 237 (436)
Q Consensus 199 ~-------~~l~~~-------------------~~g~~~~~-~-----~~~~~~a---------~~~~p~il~iDeid~l 237 (436)
+ .++... ..+.++.. + ...+... .....++|||||++.+
T Consensus 77 p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL 156 (350)
T CHL00081 77 PSDPELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL 156 (350)
T ss_pred CCChhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC
Confidence 0 000000 00111111 0 1111111 0113469999999988
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHhhc---------CCC-CCCceEEEeccCCCC-cccHHHHhhccceEEcCCCC-HHHH
Q 042771 238 CGQRGEGNESEASRRIKTELLVQMQG---------VGH-NDQKVLVLAATNTPY-ALDQAIRRRFDKRIYIPLPD-LKAR 305 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~l~~---------~~~-~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~-~~~r 305 (436)
. ..++..|+..|+. ... ...++++|+|.|..+ .+.++++.||...+.+..|+ .+.+
T Consensus 157 ~------------~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e 224 (350)
T CHL00081 157 D------------DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELR 224 (350)
T ss_pred C------------HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHH
Confidence 3 3345556666643 111 123677888777654 69999999999999999998 5999
Q ss_pred HHHHHHHhCCC--CC----------CCChhhHHHHHHHcCCCC--HHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccC
Q 042771 306 QHMFKVHLGDT--PH----------NLTESDFESLARKTEGFS--GSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMP 371 (436)
Q Consensus 306 ~~il~~~l~~~--~~----------~~~~~~~~~la~~t~g~s--~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~ 371 (436)
.+|++...... +. .....++...-+...... ...+..+++-+. ... -
T Consensus 225 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~-----~~~--------------~ 285 (350)
T CHL00081 225 VKIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICS-----ELD--------------V 285 (350)
T ss_pred HHHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHH-----HHC--------------C
Confidence 99998864311 10 011222333223333221 111111211111 111 1
Q ss_pred CCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhh
Q 042771 372 CGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLAR 412 (436)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~ 412 (436)
.++|......+.++.+|.-.. -..|+.+|+..+..-
T Consensus 286 ~s~Ra~i~l~raArA~Aal~G-----R~~V~pdDv~~~a~~ 321 (350)
T CHL00081 286 DGLRGDIVTNRAAKALAAFEG-----RTEVTPKDIFKVITL 321 (350)
T ss_pred CCChHHHHHHHHHHHHHHHcC-----CCCCCHHHHHHHHHH
Confidence 356777777788888876333 247999999998643
No 153
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.57 E-value=1.5e-14 Score=107.30 Aligned_cols=70 Identities=33% Similarity=0.492 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 6 KEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 6 ~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
..+|++++++||++|+.|+|++|+.+|++||++|+.+++.++|+..++.+++++.+|++|||.|++.++.
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~ 72 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQ 72 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999864
No 154
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.6e-14 Score=128.37 Aligned_cols=220 Identities=21% Similarity=0.318 Sum_probs=147.6
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcC-----CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhc
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTG-----KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMG 208 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~-----~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g 208 (436)
++|++.+|+.|.-++....+ ++... -.....++||.||+|||||.||+.+|+.++.||-..++..+.. .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNHYK--Rl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYK--RLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhHHH--HHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 78999999998777654322 22111 1123378999999999999999999999999999999988864 5777
Q ss_pred hH-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCCC-c-hHHHHHHHHHHHHhhcCCC----------C----
Q 042771 209 ES-EKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGNE-S-EASRRIKTELLVQMQGVGH----------N---- 267 (436)
Q Consensus 209 ~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~~-~-~~~~~~~~~ll~~l~~~~~----------~---- 267 (436)
+. +..+..++..+ .+...+||+|||||.+..+...++- . -...-++..||+.++|... +
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 64 55555665544 2234469999999999876643221 1 1245678889999996521 1
Q ss_pred ----CCceEEEeccCCC--------------------------------------------CcccHHHHhhccceEEcCC
Q 042771 268 ----DQKVLVLAATNTP--------------------------------------------YALDQAIRRRFDKRIYIPL 299 (436)
Q Consensus 268 ----~~~v~vi~ttn~~--------------------------------------------~~l~~~l~~Rf~~~i~~~~ 299 (436)
..++++|+...-. ..|-|.|.-|++.+..+..
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 1234444332110 2334777779988888899
Q ss_pred CCHHHHHHHHH-----------HHhC--CCCCCCChhhHHHHHHHc--CCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 300 PDLKARQHMFK-----------VHLG--DTPHNLTESDFESLARKT--EGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 300 p~~~~r~~il~-----------~~l~--~~~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
.+.++...||. .+|. +....++++.+..+|+.+ ....++-|+.++...++...-+..
T Consensus 301 Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~MfelP 372 (408)
T COG1219 301 LDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFELP 372 (408)
T ss_pred cCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhhCC
Confidence 99998888773 2222 233456778888888653 334467788888877766555543
No 155
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.55 E-value=4.7e-14 Score=103.67 Aligned_cols=70 Identities=26% Similarity=0.406 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLD 74 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~-~d~~~~~~~~~k~~~y~~rae~lk~~l~ 74 (436)
..++|++++++||++|+.|+|++|+.+|++||++|+.+++.+ +++..++.++.++.+|++|||.|++.+.
T Consensus 2 le~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l~ 72 (76)
T cd02681 2 LERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLVQ 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999999999986555 8999999999999999999999999974
No 156
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.54 E-value=6.9e-13 Score=116.90 Aligned_cols=194 Identities=21% Similarity=0.289 Sum_probs=137.9
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD 201 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~ 201 (436)
..++++.+.+|+|.+.+|+.|.+.....+ ...|..++||||..|||||+|++|+.++. +..++.|+..+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~--------~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTEQFA--------EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHHHHH--------cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 45677999999999999999987654322 23556899999999999999999999886 56788888877
Q ss_pred hhhhhhchHHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-CCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-GHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-~~~~~~v~vi~ttn~ 279 (436)
+.. +-.+++..+.. ..-|||+||+-- +........|-..++|- ...+.+|+|.+|+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSF-----------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSF-----------EEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCC-----------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 643 33444444443 345999998742 11222344455556654 345678999999998
Q ss_pred CCcccH----------------------HHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHH----HHcC
Q 042771 280 PYALDQ----------------------AIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLA----RKTE 333 (436)
Q Consensus 280 ~~~l~~----------------------~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la----~~t~ 333 (436)
-..++. .+-.||...+.|.+++.++-..|+.++.+...+.++++.++.=| ..-.
T Consensus 184 RHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg 263 (287)
T COG2607 184 RHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRG 263 (287)
T ss_pred cccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 854431 23349999999999999999999999999888888776555433 3344
Q ss_pred CCCHHHHHHHHHH
Q 042771 334 GFSGSDISVCVKD 346 (436)
Q Consensus 334 g~s~~dl~~l~~~ 346 (436)
|-||+--.+.++.
T Consensus 264 ~RSGR~A~QF~~~ 276 (287)
T COG2607 264 GRSGRVAWQFIRD 276 (287)
T ss_pred CCccHhHHHHHHH
Confidence 5566655555444
No 157
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.53 E-value=7.7e-14 Score=102.35 Aligned_cols=69 Identities=46% Similarity=0.791 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
++++|+.++++|++.|+.|+|.+|+.+|.+|+++|+.+++.++++..++.+++++.+|++|||.+++.|
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~L 69 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEYL 69 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999999999999999999999999999999999999999999875
No 158
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.53 E-value=8e-14 Score=103.68 Aligned_cols=71 Identities=59% Similarity=0.899 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
++++|++++++|++.|+.|+|++|+.+|.+|+++|+.+++.++|+..++.+++++.+|++|+|.|+..+.+
T Consensus 2 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~~ 72 (75)
T cd02678 2 FLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLAK 72 (75)
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999854
No 159
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.53 E-value=7.1e-14 Score=102.93 Aligned_cols=69 Identities=32% Similarity=0.614 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
++.+|+.++++|++.|+.|+|++|+.+|++|+++|+.+++.++|+..|+.++.|+.+|++|||+|+..-
T Consensus 2 ~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~~ 70 (75)
T cd02677 2 YLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRLH 70 (75)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999999999999999999999999999998864
No 160
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.53 E-value=8.3e-14 Score=101.28 Aligned_cols=69 Identities=26% Similarity=0.335 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
..+.|+.++++||++|+.|+|.+|+.+|++||++|++.++.++|...+..+++++.+|++|++.|++.+
T Consensus 2 L~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 2 LEEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999999999999999999999999999999999999999999999986
No 161
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.52 E-value=5.3e-13 Score=128.03 Aligned_cols=159 Identities=21% Similarity=0.275 Sum_probs=101.2
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-------CCceE--------
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-------DSTFF-------- 195 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-------~~~~~-------- 195 (436)
.|..|+|++++|..|.-.+..|. ..+++|.|+||+|||+++++++..+ ++++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 58899999999999877665431 2579999999999999999999876 22221
Q ss_pred -EEecc-------------------chhh-----hhhchH--HHHHH---HHHH--HHHhcCCeEEEEccccccccCCCC
Q 042771 196 -SISSS-------------------DLVS-----KWMGES--EKLVS---SLFQ--MARESAPSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 196 -~v~~~-------------------~l~~-----~~~g~~--~~~~~---~~~~--~a~~~~p~il~iDeid~l~~~~~~ 243 (436)
..+|. ++.. ...|.. ...+. ..|. .......++|||||++.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~----- 144 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLE----- 144 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCC-----
Confidence 00000 0000 111111 00000 0000 0011234699999999873
Q ss_pred CCCchHHHHHHHHHHHHhhcC---------CC-CCCceEEEeccCCCC-cccHHHHhhccceEEcCCCCH-HHHHHHHHH
Q 042771 244 GNESEASRRIKTELLVQMQGV---------GH-NDQKVLVLAATNTPY-ALDQAIRRRFDKRIYIPLPDL-KARQHMFKV 311 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~~~---------~~-~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p~~-~~r~~il~~ 311 (436)
..++..|+..|+.- .. ...++++++|.|..+ .+++++++||...+.+++|+. +++.+|++.
T Consensus 145 -------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~ 217 (337)
T TIGR02030 145 -------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVER 217 (337)
T ss_pred -------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHh
Confidence 34456666666421 11 123578888888655 789999999999999999875 889999987
Q ss_pred Hh
Q 042771 312 HL 313 (436)
Q Consensus 312 ~l 313 (436)
..
T Consensus 218 ~~ 219 (337)
T TIGR02030 218 RT 219 (337)
T ss_pred hh
Confidence 54
No 162
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2e-13 Score=125.73 Aligned_cols=199 Identities=21% Similarity=0.359 Sum_probs=134.0
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhc-hH
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMG-ES 210 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g-~~ 210 (436)
|+|++++|+.+.-++....++.++-.. ..-.|++||..||+|+|||-+|+.+|+-.+.||+.|.++.|.. .|+| ..
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 799999999998888665444433332 2334589999999999999999999999999999886654422 1111 01
Q ss_pred HHHHH---------------------------------------------------------------------------
Q 042771 211 EKLVS--------------------------------------------------------------------------- 215 (436)
Q Consensus 211 ~~~~~--------------------------------------------------------------------------- 215 (436)
+..++
T Consensus 97 esivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~eIeie 176 (444)
T COG1220 97 ESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDKEIEIE 176 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCccEEEEE
Confidence 11111
Q ss_pred -------------------------HHHHHHHhc---------------------------------------CCeEEEE
Q 042771 216 -------------------------SLFQMARES---------------------------------------APSIIFI 231 (436)
Q Consensus 216 -------------------------~~~~~a~~~---------------------------------------~p~il~i 231 (436)
.+|..+... +-+||||
T Consensus 177 v~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~GIvFI 256 (444)
T COG1220 177 VADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQNGIVFI 256 (444)
T ss_pred EeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcCeEEE
Confidence 111111000 1249999
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-------CCCceEEEecc----CCCCcccHHHHhhccceEEcCCC
Q 042771 232 DEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-------NDQKVLVLAAT----NTPYALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 232 Deid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~~~p 300 (436)
||||.++.+.+.++..-.-.-++..||-.++|... ....+++|++. ..|.+|-|.|.-||+..+++...
T Consensus 257 DEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRVEL~~L 336 (444)
T COG1220 257 DEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRVELDAL 336 (444)
T ss_pred ehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEEEcccC
Confidence 99999998775433222234566678888887532 23467888765 67889999999999999999999
Q ss_pred CHHHHHHHHHH-----------HhC--CCCCCCChhhHHHHHHHcC
Q 042771 301 DLKARQHMFKV-----------HLG--DTPHNLTESDFESLARKTE 333 (436)
Q Consensus 301 ~~~~r~~il~~-----------~l~--~~~~~~~~~~~~~la~~t~ 333 (436)
+.+....||.. ++. .....++++.++.||..+.
T Consensus 337 t~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 337 TKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred CHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 99998888732 222 2334566777777776554
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=6.8e-13 Score=126.69 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=125.1
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-----------------
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST----------------- 193 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~----------------- 193 (436)
.|++|+|++.+++.|...+.. .+.++.+||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~-----------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQ-----------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 589999999999999998854 2334799999999999999999999986332
Q ss_pred -eEEEeccchh-hh-----h---hc--------hHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHH
Q 042771 194 -FFSISSSDLV-SK-----W---MG--------ESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 194 -~~~v~~~~l~-~~-----~---~g--------~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
++.+.+.... ++ + .| -.-..++.+...+. .....|++||++|.|. .
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~------------~ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN------------E 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC------------H
Confidence 1222221000 00 0 00 00123445544443 2355799999999883 3
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK 331 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~ 331 (436)
...+.|++.++.. + +.++|..|+.++.+.++++||| ..+.|+.++.++..+++........ .+.+...++..
T Consensus 139 ~aaNaLLK~LEEP---p-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~---~~~~~~~l~~~ 210 (314)
T PRK07399 139 AAANALLKTLEEP---G-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI---LNINFPELLAL 210 (314)
T ss_pred HHHHHHHHHHhCC---C-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc---chhHHHHHHHH
Confidence 3467899999853 3 4567777888999999999999 5999999999999999987643221 12235678888
Q ss_pred cCCCCHHHHHHHHH
Q 042771 332 TEGFSGSDISVCVK 345 (436)
Q Consensus 332 t~g~s~~dl~~l~~ 345 (436)
+.| +++....+++
T Consensus 211 a~G-s~~~al~~l~ 223 (314)
T PRK07399 211 AQG-SPGAAIANIE 223 (314)
T ss_pred cCC-CHHHHHHHHH
Confidence 877 4445444444
No 164
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.51 E-value=6.2e-13 Score=119.38 Aligned_cols=181 Identities=18% Similarity=0.250 Sum_probs=139.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-C--Cc-----
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-D--ST----- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-~--~~----- 193 (436)
.|..++.+.+++.+.++++....|+.+... ....++++|||+|+||-|.+-++.+++ | ..
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~ 69 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIE 69 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeee
Confidence 366788899999999999999999886531 122589999999999999999999986 2 11
Q ss_pred ---------------------eEEEeccchhhhhhchHHHHHHHHHHHHHhc---------CCeEEEEccccccccCCCC
Q 042771 194 ---------------------FFSISSSDLVSKWMGESEKLVSSLFQMARES---------APSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 194 ---------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~---------~p~il~iDeid~l~~~~~~ 243 (436)
.+.+++++.. ....-.+..+.....+. .-.|++|.|+|.|
T Consensus 70 ~~t~~tpS~kklEistvsS~yHlEitPSDaG----~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~L------ 139 (351)
T KOG2035|consen 70 TRTFTTPSKKKLEISTVSSNYHLEITPSDAG----NYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADEL------ 139 (351)
T ss_pred eEEEecCCCceEEEEEecccceEEeChhhcC----cccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhh------
Confidence 1122222211 12233445555544333 2359999999998
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChh
Q 042771 244 GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTES 323 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~ 323 (436)
.++.+..|-..|+.+ .+++.+|..+|....+-+++++|| ..+.+|.|+.++...++...+.+....++.+
T Consensus 140 ------T~dAQ~aLRRTMEkY---s~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 140 ------TRDAQHALRRTMEKY---SSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred ------hHHHHHHHHHHHHHH---hcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 445566777777755 345778889999999999999999 7999999999999999999999999999999
Q ss_pred hHHHHHHHcCC
Q 042771 324 DFESLARKTEG 334 (436)
Q Consensus 324 ~~~~la~~t~g 334 (436)
.+.+|++.++|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 99999999988
No 165
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.51 E-value=2.2e-13 Score=128.47 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=94.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh--hhchHHHH----------HHHHHHHHHhcCCeEEEEccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK--WMGESEKL----------VSSLFQMARESAPSIIFIDEI 234 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~--~~g~~~~~----------~~~~~~~a~~~~p~il~iDei 234 (436)
++|||.||||||||++++.+|+.++.+++.+++...... +.|...-. ....+..|.. .+.+|++||+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDEi 143 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDEY 143 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEechh
Confidence 579999999999999999999999999999987655433 33321110 1112233322 4578999999
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHhhc-----------CCCCCCceEEEeccCCCC------------cccHHHHhhc
Q 042771 235 DSLCGQRGEGNESEASRRIKTELLVQMQG-----------VGHNDQKVLVLAATNTPY------------ALDQAIRRRF 291 (436)
Q Consensus 235 d~l~~~~~~~~~~~~~~~~~~~ll~~l~~-----------~~~~~~~v~vi~ttn~~~------------~l~~~l~~Rf 291 (436)
|...+ .++..|...++. .....+.+.||+|+|... .++.++++||
T Consensus 144 n~a~p------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF 211 (327)
T TIGR01650 144 DAGRP------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRW 211 (327)
T ss_pred hccCH------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhe
Confidence 97622 233443333331 011344688999999853 5689999999
Q ss_pred cceEEcCCCCHHHHHHHHHHHhC
Q 042771 292 DKRIYIPLPDLKARQHMFKVHLG 314 (436)
Q Consensus 292 ~~~i~~~~p~~~~r~~il~~~l~ 314 (436)
-..+.+++|+.++..+|+.....
T Consensus 212 ~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 212 SIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred eeEeeCCCCCHHHHHHHHHhhcc
Confidence 77789999999999999987653
No 166
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.50 E-value=4e-13 Score=140.42 Aligned_cols=160 Identities=21% Similarity=0.300 Sum_probs=105.5
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc--------------------
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-------------------- 190 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-------------------- 190 (436)
.|.+|+|++.++..|......+. ..+|||.|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~------------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPR------------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCC------------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 58899999999999877665431 1479999999999999999999987
Q ss_pred ---------------CCceEEEeccchhhhhhchH--HHHHH---HHHH--HHHhcCCeEEEEccccccccCCCCCCCch
Q 042771 191 ---------------DSTFFSISSSDLVSKWMGES--EKLVS---SLFQ--MARESAPSIIFIDEIDSLCGQRGEGNESE 248 (436)
Q Consensus 191 ---------------~~~~~~v~~~~l~~~~~g~~--~~~~~---~~~~--~a~~~~p~il~iDeid~l~~~~~~~~~~~ 248 (436)
..+|+.+.+.......+|.. ...+. ..+. .......+|||||||+.|.
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~---------- 139 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLD---------- 139 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCC----------
Confidence 24555555443222222221 11010 0000 0001134599999999983
Q ss_pred HHHHHHHHHHHHhhcCC----------CCCCceEEEeccCCC-CcccHHHHhhccceEEcCCCC-HHHHHHHHHHHhC
Q 042771 249 ASRRIKTELLVQMQGVG----------HNDQKVLVLAATNTP-YALDQAIRRRFDKRIYIPLPD-LKARQHMFKVHLG 314 (436)
Q Consensus 249 ~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn~~-~~l~~~l~~Rf~~~i~~~~p~-~~~r~~il~~~l~ 314 (436)
..+++.|+..|+.-. ....++.+|+|+|.. ..+.++|++||...+.++.+. .+++.+++...+.
T Consensus 140 --~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 140 --DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred --HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHh
Confidence 345666777765220 112358889988854 368899999999888888764 6778888876543
No 167
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.50 E-value=2.7e-13 Score=127.83 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=65.7
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC------------CCcccHHHHhhccc
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT------------PYALDQAIRRRFDK 293 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~------------~~~l~~~l~~Rf~~ 293 (436)
|+||||||+|.|- -+.++.|-..++. +.. .+||.+||+ |+.++..|++|+ .
T Consensus 279 pGVLFIDEvHmLD------------iEcFsfLnralEs---~~s-PiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-l 341 (398)
T PF06068_consen 279 PGVLFIDEVHMLD------------IECFSFLNRALES---ELS-PIIILATNRGITKIRGTDIISPHGIPLDLLDRL-L 341 (398)
T ss_dssp E-EEEEESGGGSB------------HHHHHHHHHHHTS---TT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-E
T ss_pred cceEEecchhhcc------------HHHHHHHHHHhcC---CCC-cEEEEecCceeeeccCccCcCCCCCCcchHhhc-E
Confidence 6799999999872 2334545555552 223 356666663 468889999999 7
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 042771 294 RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCV 344 (436)
Q Consensus 294 ~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 344 (436)
+|...+++.++..+|++..+......++++.++.|+......|-+---+|+
T Consensus 342 II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 342 IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhh
Confidence 999999999999999999999999999999999998876655544443443
No 168
>PRK04132 replication factor C small subunit; Provisional
Probab=99.50 E-value=9.7e-13 Score=138.62 Aligned_cols=148 Identities=19% Similarity=0.199 Sum_probs=118.0
Q ss_pred CCcceEEec--CCcchHHHHHHHHHHHc-----CCceEEEeccchhhhhhchHHHHHHHHHHHHHhc------CCeEEEE
Q 042771 165 PWRAFLLYG--PPGTGKSYLAKAVATEA-----DSTFFSISSSDLVSKWMGESEKLVSSLFQMARES------APSIIFI 231 (436)
Q Consensus 165 ~~~~iLl~G--ppGtGKT~la~aia~~l-----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~------~p~il~i 231 (436)
|.-+-+..| |++.||||+|+++|+++ +.+++.+|+++..+. ..++.+...+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 444566778 99999999999999998 557999999985331 2344444333221 2369999
Q ss_pred ccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHH
Q 042771 232 DEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKV 311 (436)
Q Consensus 232 Deid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~ 311 (436)
||+|.|. ...++.|+..|+. +..++.+|++||+++.+.++++||| ..+.|++|+.++....++.
T Consensus 637 DEaD~Lt------------~~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~ 700 (846)
T PRK04132 637 DEADALT------------QDAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRY 700 (846)
T ss_pred ECcccCC------------HHHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHH
Confidence 9999983 2347888888884 3567889999999999999999999 6899999999999999988
Q ss_pred HhCCCCCCCChhhHHHHHHHcCC
Q 042771 312 HLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 312 ~l~~~~~~~~~~~~~~la~~t~g 334 (436)
.+......+++..+..|+..++|
T Consensus 701 I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 701 IAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCC
Confidence 88776777789999999999998
No 169
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.50 E-value=1.3e-13 Score=140.77 Aligned_cols=255 Identities=18% Similarity=0.163 Sum_probs=148.2
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE----eccchhhhhhc
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI----SSSDLVSKWMG 208 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v----~~~~l~~~~~g 208 (436)
+|.|++.+|..|.-.+...... ..-.+ ..+...++||+|+||||||++|+++++......+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 4889999988887665442111 10011 122335899999999999999999999876443322 22222111000
Q ss_pred h---HHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC----------CCCCceEEEe
Q 042771 209 E---SEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG----------HNDQKVLVLA 275 (436)
Q Consensus 209 ~---~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ 275 (436)
. .+..++. ........++++|||++.+. ......|+..|+.-. ..+.++.||+
T Consensus 283 ~~~~g~~~~~~--G~l~~A~~Gil~iDEi~~l~------------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viA 348 (509)
T smart00350 283 DPETREFTLEG--GALVLADNGVCCIDEFDKMD------------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLA 348 (509)
T ss_pred ccCcceEEecC--ccEEecCCCEEEEechhhCC------------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEE
Confidence 0 0000000 00011234699999999873 233455555554321 0124678999
Q ss_pred ccCCCC-------------cccHHHHhhccceE-EcCCCCHHHHHHHHHHHhCCCC-----------CCCChhhHHHHHH
Q 042771 276 ATNTPY-------------ALDQAIRRRFDKRI-YIPLPDLKARQHMFKVHLGDTP-----------HNLTESDFESLAR 330 (436)
Q Consensus 276 ttn~~~-------------~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~~~~-----------~~~~~~~~~~la~ 330 (436)
|+|+.+ .+++++++||+..+ ..+.|+.+....|.++.+.... ..++.+.+.....
T Consensus 349 a~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~ 428 (509)
T smart00350 349 AANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIA 428 (509)
T ss_pred EeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHH
Confidence 999762 68999999998765 4478999999999988653211 1234444444433
Q ss_pred HcCC-----CCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHH
Q 042771 331 KTEG-----FSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTD 405 (436)
Q Consensus 331 ~t~g-----~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d 405 (436)
.+.. ++. ++...+.+.. .+.+...+ ........+.++|...++-+.+++.|+-.+.+ .|+.+|
T Consensus 429 ~ar~~~~P~ls~-~~~~~i~~~y----~~~R~~~~--~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~-----~V~~~D 496 (509)
T smart00350 429 YAREKIKPKLSE-EAAEKLVKAY----VDLRKEDS--QSEARSSIPITVRQLESIIRLSEAHAKMRLSD-----VVEEAD 496 (509)
T ss_pred HHHhcCCCCCCH-HHHHHHHHHH----HHhccccc--ccccccccCcCHHHHHHHHHHHHHHHHHcCCC-----ccCHHH
Confidence 3332 222 3333322222 22221100 00001246788999999999999999876654 899999
Q ss_pred HHHHHhhCCC
Q 042771 406 FDKVLARQRP 415 (436)
Q Consensus 406 ~~~al~~~~p 415 (436)
+..|++-+.-
T Consensus 497 v~~ai~l~~~ 506 (509)
T smart00350 497 VEEAIRLLRE 506 (509)
T ss_pred HHHHHHHHHH
Confidence 9999986543
No 170
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.50 E-value=6.2e-13 Score=112.66 Aligned_cols=138 Identities=43% Similarity=0.671 Sum_probs=92.2
Q ss_pred CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHH
Q 042771 137 GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKL 213 (436)
Q Consensus 137 G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~ 213 (436)
|.+.+.+.+...+.. ....+++|+||||||||++++.+++.+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666666665533 233689999999999999999999998 88999998877654332221111
Q ss_pred ---HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---CCCceEEEeccCCCC--cccH
Q 042771 214 ---VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH---NDQKVLVLAATNTPY--ALDQ 285 (436)
Q Consensus 214 ---~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~v~vi~ttn~~~--~l~~ 285 (436)
....+.......+.+|+|||++.+. ......++..+..... ....+.+|+++|... .+++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~------------~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 137 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLS------------RGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDR 137 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhh------------HHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcCh
Confidence 1122233344567899999999761 1123344444444322 135678888888776 7889
Q ss_pred HHHhhccceEEcC
Q 042771 286 AIRRRFDKRIYIP 298 (436)
Q Consensus 286 ~l~~Rf~~~i~~~ 298 (436)
.+.+||+..+.++
T Consensus 138 ~~~~r~~~~i~~~ 150 (151)
T cd00009 138 ALYDRLDIRIVIP 150 (151)
T ss_pred hHHhhhccEeecC
Confidence 9999998777765
No 171
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.1e-12 Score=122.56 Aligned_cols=190 Identities=21% Similarity=0.359 Sum_probs=133.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhch-HHHHHHHHHHHHH----hcCCeEEEEccccccccC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMGE-SEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g~-~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~ 240 (436)
.+|||.||+|+|||.||+.+|+.++.||...+|..+.. .|+|+ .+..+..++..|. +.+.+||||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999998864 56765 4666777776653 335679999999999754
Q ss_pred CCCCCC--chHHHHHHHHHHHHhhcCCCC------------------CCceEEEeccCCC--------------------
Q 042771 241 RGEGNE--SEASRRIKTELLVQMQGVGHN------------------DQKVLVLAATNTP-------------------- 280 (436)
Q Consensus 241 ~~~~~~--~~~~~~~~~~ll~~l~~~~~~------------------~~~v~vi~ttn~~-------------------- 280 (436)
..+-+. .-...-++..||+.++|...+ ..++++|+...-.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 432111 122456778899999864211 1234444432100
Q ss_pred ------------------------------------CcccHHHHhhccceEEcCCCCHHHHHHHHH-----------HHh
Q 042771 281 ------------------------------------YALDQAIRRRFDKRIYIPLPDLKARQHMFK-----------VHL 313 (436)
Q Consensus 281 ------------------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~-----------~~l 313 (436)
..+-|.|.-||+..+-|...+.+....+|. .+|
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 123377888999999999999888887773 223
Q ss_pred C--CCCCCCChhhHHHHHHHc--CCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 314 G--DTPHNLTESDFESLARKT--EGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 314 ~--~~~~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
. +....+++..++.+|+.+ .+--++-|+.++..+++.+.-+..
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~LleamfevP 513 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEVP 513 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccCC
Confidence 2 233456788899988753 455578899999998888765554
No 172
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.48 E-value=8e-13 Score=117.69 Aligned_cols=144 Identities=21% Similarity=0.274 Sum_probs=103.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc------------------------eEEEeccchhhhhhchHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST------------------------FFSISSSDLVSKWMGESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~ 219 (436)
..++.+||+||+|+|||++|+.+++.+.+. +..+.... .. .....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---Cc--CCHHHHHHHHH
Confidence 344789999999999999999999987442 22222111 00 11234444454
Q ss_pred HHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceE
Q 042771 220 MARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRI 295 (436)
Q Consensus 220 ~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i 295 (436)
.+.. ....||+|||+|.+. ....+.|+..++. .+..+.+|++|+.+..+.+++++|+ ..+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~---~~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEE---PPPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcC---CCCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 4432 345699999999883 2235678888875 3445667777778899999999999 589
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 296 YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
.|++|+.++...++... . ++++.+..|+..+.|
T Consensus 151 ~~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGG 183 (188)
T ss_pred eCCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCC
Confidence 99999999999988876 2 578889999998887
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.48 E-value=4.5e-13 Score=129.87 Aligned_cols=150 Identities=25% Similarity=0.333 Sum_probs=107.6
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---------------------
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD--------------------- 191 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~--------------------- 191 (436)
++++|.+.+...+..++... ...++.+||+||||+|||++|.++|+.+.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~----------~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALES----------GRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhc----------CCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 35788888888888776532 12224699999999999999999999986
Q ss_pred ---CceEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 192 ---STFFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 192 ---~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
..++.+++++..... .....++.+-..... +...||+|||+|.|. ....+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt------------~~A~nallk~lE-- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLT------------EDAANALLKTLE-- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHh------------HHHHHHHHHHhc--
Confidence 467777777654421 122334444333322 345699999999983 355788888887
Q ss_pred CCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHH
Q 042771 265 GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFK 310 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 310 (436)
.+..+..+|.+||.++.+-+.+++|| ..+.|++|+........+
T Consensus 135 -ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 -EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred -cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 35667889999999999999999999 588887765555444443
No 174
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=99.47 E-value=8.2e-15 Score=103.55 Aligned_cols=62 Identities=45% Similarity=0.904 Sum_probs=55.2
Q ss_pred CccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Q 042771 368 MWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFG 433 (436)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~ 433 (436)
.|+||++..+++.++.+.++....+.. ++||.+||..||++++||||.++|++|++|+++||
T Consensus 1 ~~~PCs~~dp~a~~m~~~di~~~~l~~----p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 1 MYTPCSPSDPGAVEMSLMDIPAEKLKE----PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp -EEEESSSSTTEEEEEGTGS-GGGB-H----HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CccCCCCCCccchhccHhhcCcccccC----CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 478999999999999999999876655 78999999999999999999999999999999998
No 175
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-12 Score=134.11 Aligned_cols=212 Identities=18% Similarity=0.284 Sum_probs=154.4
Q ss_pred HhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----
Q 042771 116 RAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----- 190 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----- 190 (436)
.+.....+...-..-.++-++|.++-++++.+.+.. +...+-+|.|+||+|||.++..+|...
T Consensus 153 L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~R------------R~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~V 220 (786)
T COG0542 153 LEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSR------------RTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDV 220 (786)
T ss_pred HHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhc------------cCCCCCeEecCCCCCHHHHHHHHHHHHhcCCC
Confidence 334444455555667889999999888888776643 333688999999999999999999875
Q ss_pred -----CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC-chHHHHHHHHHHHHhh
Q 042771 191 -----DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE-SEASRRIKTELLVQMQ 262 (436)
Q Consensus 191 -----~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~-~~~~~~~~~~ll~~l~ 262 (436)
+..++.++...+. .+|-|+.+..++.+.+.+....+.||||||+|.+.+.....+. -+..+-++-.|
T Consensus 221 P~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL----- 295 (786)
T COG0542 221 PESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL----- 295 (786)
T ss_pred CHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH-----
Confidence 5677888887775 4789999999999999999888999999999999887654221 22222222222
Q ss_pred cCCCCCCceEEEeccCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----CCCCCCChhhHHHHHHHcC
Q 042771 263 GVGHNDQKVLVLAATNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----DTPHNLTESDFESLARKTE 333 (436)
Q Consensus 263 ~~~~~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~t~ 333 (436)
..+.+-+|++|... -.-|++|-|||+ .|.+..|+.++-..||+.+-. .....+++..+...+..+.
T Consensus 296 ----ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ-~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~ 370 (786)
T COG0542 296 ----ARGELRCIGATTLDEYRKYIEKDAALERRFQ-KVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSD 370 (786)
T ss_pred ----hcCCeEEEEeccHHHHHHHhhhchHHHhcCc-eeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHH
Confidence 23456677777433 356899999995 888999999999999976543 3455678988888887765
Q ss_pred CC-----CHHHHHHHHHHHhh
Q 042771 334 GF-----SGSDISVCVKDVLF 349 (436)
Q Consensus 334 g~-----s~~dl~~l~~~a~~ 349 (436)
.| -|.---.++.+|+.
T Consensus 371 RYI~dR~LPDKAIDLiDeA~a 391 (786)
T COG0542 371 RYIPDRFLPDKAIDLLDEAGA 391 (786)
T ss_pred hhcccCCCCchHHHHHHHHHH
Confidence 54 23333456666553
No 176
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.45 E-value=1.1e-11 Score=122.33 Aligned_cols=235 Identities=16% Similarity=0.177 Sum_probs=133.8
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEeccc-hhhhhhchH-
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSSD-LVSKWMGES- 210 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~~-l~~~~~g~~- 210 (436)
|+|.+++.+.+...+.. ..++||+||||||||++|++++..++. +|..+.+.- ......|..
T Consensus 22 i~gre~vI~lll~aala--------------g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~ 87 (498)
T PRK13531 22 LYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLS 87 (498)
T ss_pred ccCcHHHHHHHHHHHcc--------------CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHH
Confidence 88999999888776532 268999999999999999999998753 344333321 111222211
Q ss_pred HHHH--HHHHHHHHhc---CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-------CCCCceEEEeccC
Q 042771 211 EKLV--SSLFQMARES---APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-------HNDQKVLVLAATN 278 (436)
Q Consensus 211 ~~~~--~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~ttn 278 (436)
-... ..-|.....+ ...+||+|||+.+ ...+.+.|+..|+... ...+..+++++||
T Consensus 88 i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra------------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN 155 (498)
T PRK13531 88 IQALKDEGRYQRLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASN 155 (498)
T ss_pred HhhhhhcCchhhhcCCccccccEEeecccccC------------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECC
Confidence 0000 1112211111 2249999999875 3455777888774221 1112234555556
Q ss_pred CCC---cccHHHHhhccceEEcCCCC-HHHHHHHHHHHhCC--C----CCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 279 TPY---ALDQAIRRRFDKRIYIPLPD-LKARQHMFKVHLGD--T----PHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 279 ~~~---~l~~~l~~Rf~~~i~~~~p~-~~~r~~il~~~l~~--~----~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
... ...+++..||...+.+|+|+ .++...|+...... . ...++.+++..+-+........| -+.+.+
T Consensus 156 ~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d---~v~eyI 232 (498)
T PRK13531 156 ELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPD---HVFELI 232 (498)
T ss_pred CCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCH---HHHHHH
Confidence 432 23358999998889999997 56668888764321 1 22356677777766665543221 222222
Q ss_pred hhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhh
Q 042771 349 FEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLAR 412 (436)
Q Consensus 349 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~ 412 (436)
..-.+..+. +.+. ...|||...+..+.+++.|.-.. -..|+.+|+. .+..
T Consensus 233 ~~L~~~lr~------~r~~--~~~SpR~~~~l~~~akA~A~l~G-----R~~V~p~Dv~-ll~~ 282 (498)
T PRK13531 233 FQLRQQLDA------LPNA--PYVSDRRWKKAIRLLQASAFFSG-----RDAIAPIDLI-LLKD 282 (498)
T ss_pred HHHHHHHhc------CCCC--CCcCcHHHHHHHHHHHHHHHHCC-----CCCCCHHHHH-HhHH
Confidence 111111110 0011 12677777777777777776322 2479999998 4433
No 177
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.45 E-value=3.4e-12 Score=123.32 Aligned_cols=173 Identities=16% Similarity=0.140 Sum_probs=118.3
Q ss_pred ccccccC-cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc----------------
Q 042771 131 KWNDVAG-LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST---------------- 193 (436)
Q Consensus 131 ~~~dl~G-~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~---------------- 193 (436)
.|+.|+| ++.+++.|...+.. .+.++.+||+||+|+||+++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5888988 99999999887743 2444778999999999999999999986432
Q ss_pred --------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 194 --------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 194 --------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
+..+... +.. -.-..++.+.+.+. .....|++|||+|.+. ....+.|++.+
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~------------~~a~NaLLK~L 134 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT------------ASAANSLLKFL 134 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC------------HHHHHHHHHHh
Confidence 2222111 000 11123444444332 2345699999999873 34567899999
Q ss_pred hcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHH
Q 042771 262 QGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDIS 341 (436)
Q Consensus 262 ~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~ 341 (436)
+. ++..+++|.+|+.+..+.++++||+ ..+.|+.|+.++...++... . ++......++... | ++....
T Consensus 135 EE---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~~----g--i~~~~~~~l~~~~-g-~~~~A~ 202 (329)
T PRK08058 135 EE---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQEE----G--ISESLATLLAGLT-N-SVEEAL 202 (329)
T ss_pred cC---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHHc----C--CChHHHHHHHHHc-C-CHHHHH
Confidence 84 5667778888888999999999999 58999999999887777642 2 3444444555553 4 444433
Q ss_pred HH
Q 042771 342 VC 343 (436)
Q Consensus 342 ~l 343 (436)
.+
T Consensus 203 ~l 204 (329)
T PRK08058 203 AL 204 (329)
T ss_pred HH
Confidence 33
No 178
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=3.6e-12 Score=122.35 Aligned_cols=151 Identities=21% Similarity=0.282 Sum_probs=106.9
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc------------------------eEEEeccchhhhhhchHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST------------------------FFSISSSDLVSKWMGESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~ 219 (436)
+.++.+||+||+|+|||++|+++|+.+.+. ++.+.+.+- +.. -.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~--i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKT--IKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCC--CCHHHHHHHHH
Confidence 445789999999999999999999987542 222322110 000 11233444444
Q ss_pred HH----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceE
Q 042771 220 MA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRI 295 (436)
Q Consensus 220 ~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i 295 (436)
.+ ......|++||++|.|. ....+.|++.++. ++.++++|.+|+.+..+.++++|||. .+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~------------~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~~ 160 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMN------------RNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-QQ 160 (328)
T ss_pred HHhhccccCCCeEEEECChhhCC------------HHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-ee
Confidence 43 33456699999999983 3457889999984 55678899999999999999999995 69
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCH
Q 042771 296 YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
.|++|+.++....+..... ..++.....++..+.|-.+
T Consensus 161 ~~~~~~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP----ESDERERIELLTLAGGSPL 198 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHH
Confidence 9999999998888876542 1245566677777777433
No 179
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.44 E-value=1.3e-12 Score=97.56 Aligned_cols=71 Identities=45% Similarity=0.726 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
.+++|++++++|+..|+.|+|++|+.+|.+|+++|+.+++.++++..++.+++++.+|++|+|.|+..+..
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~~ 72 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLKK 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999743
No 180
>PHA02244 ATPase-like protein
Probab=99.42 E-value=6.7e-12 Score=119.72 Aligned_cols=127 Identities=20% Similarity=0.252 Sum_probs=82.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhc---hHHH-HHHHHHHHHHhcCCeEEEEccccccccCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMG---ESEK-LVSSLFQMARESAPSIIFIDEIDSLCGQRG 242 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g---~~~~-~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 242 (436)
.++||+||||||||++|+++|+.++.+|+.++...-.....| .... ....++...+ .+++|||||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~--~GgvLiLDEId~a~p--- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFK--KGGLFFIDEIDASIP--- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhh--cCCEEEEeCcCcCCH---
Confidence 579999999999999999999999999999884210000011 1001 1112233332 346999999998632
Q ss_pred CCCCchHHHHHHHHHHHHhh--------cCCCCCCceEEEeccCCC-----------CcccHHHHhhccceEEcCCCCHH
Q 042771 243 EGNESEASRRIKTELLVQMQ--------GVGHNDQKVLVLAATNTP-----------YALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~l~--------~~~~~~~~v~vi~ttn~~-----------~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
.+...|...++ +....+.++.+|+|+|.+ ..+++++++|| ..+.+++|+.
T Consensus 195 ---------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~- 263 (383)
T PHA02244 195 ---------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEK- 263 (383)
T ss_pred ---------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcH-
Confidence 22333333333 111234578999999974 47799999999 5899999984
Q ss_pred HHHHHH
Q 042771 304 ARQHMF 309 (436)
Q Consensus 304 ~r~~il 309 (436)
....|.
T Consensus 264 ~E~~i~ 269 (383)
T PHA02244 264 IEHLIS 269 (383)
T ss_pred HHHHHh
Confidence 333444
No 181
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.41 E-value=2.9e-11 Score=113.94 Aligned_cols=192 Identities=18% Similarity=0.285 Sum_probs=120.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC-ceEE---Eec----cchh----hhh----hch-HHHHHHHHH----HHHHhcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS-TFFS---ISS----SDLV----SKW----MGE-SEKLVSSLF----QMARESA 225 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~-~~~~---v~~----~~l~----~~~----~g~-~~~~~~~~~----~~a~~~~ 225 (436)
..++|+||+|+|||++++.+++.+.. .+.. +++ .++. ..+ .+. ....+..+. .....+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 45899999999999999999998762 2221 111 1111 000 011 111122222 2233556
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-CCCceEEEeccCCC--Ccc----cHHHHhhccceEEcC
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-NDQKVLVLAATNTP--YAL----DQAIRRRFDKRIYIP 298 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~~--~~l----~~~l~~Rf~~~i~~~ 298 (436)
+.+|+|||++.+.. .. ...+. .+-.... ....+.|+.+.... ..+ ...+.+|+...+.++
T Consensus 124 ~~vliiDe~~~l~~--------~~----~~~l~-~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 124 RALLVVDEAQNLTP--------EL----LEELR-MLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred CeEEEEECcccCCH--------HH----HHHHH-HHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 77999999998731 11 22221 2211111 12223333333221 111 234667888889999
Q ss_pred CCCHHHHHHHHHHHhCCC----CCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCC
Q 042771 299 LPDLKARQHMFKVHLGDT----PHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGP 374 (436)
Q Consensus 299 ~p~~~~r~~il~~~l~~~----~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~ 374 (436)
+.+.++...++...+... ...++++.++.|++.+.|.. +.|..+|..+...+.....
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~~------------------ 251 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEEK------------------ 251 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcCC------------------
Confidence 999999999998887532 23578999999999999975 5699999999988877543
Q ss_pred CCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC
Q 042771 375 KQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR 414 (436)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ 414 (436)
..|+.+++..++..++
T Consensus 252 ------------------------~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 252 ------------------------REIGGEEVREVIAEID 267 (269)
T ss_pred ------------------------CCCCHHHHHHHHHHhh
Confidence 5799999999998764
No 182
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.41 E-value=1.9e-13 Score=120.25 Aligned_cols=143 Identities=24% Similarity=0.362 Sum_probs=66.7
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-------------------
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS------------------- 192 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~------------------- 192 (436)
|+||+|++.+|++|.-+... .+++||+||||||||++|+.+...+.-
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCC
Confidence 78999999999999887743 269999999999999999999986521
Q ss_pred ---------ceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 193 ---------TFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 193 ---------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
+|.....+.-....+|......-. .......+|||+||+..+ .+.+++.|..-++.
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PG---eislAh~GVLflDE~~ef------------~~~vld~Lr~ple~ 132 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGRPPRPG---EISLAHRGVLFLDELNEF------------DRSVLDALRQPLED 132 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGGGEEE----CGGGGTTSEEEECETTTS-------------HHHHHHHHHHHHH
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCcCCCcC---HHHHhcCCEEEechhhhc------------CHHHHHHHHHHHHC
Confidence 111111100000000100000000 011123459999999876 45667777777763
Q ss_pred CC----------CCCCceEEEeccCCC-----------------------CcccHHHHhhccceEEcCCCCHH
Q 042771 264 VG----------HNDQKVLVLAATNTP-----------------------YALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 264 ~~----------~~~~~v~vi~ttn~~-----------------------~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
-. .-+.++++|+|+|.- ..+...++.|||..+.++..+.+
T Consensus 133 g~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 133 GEVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp SBEEEEETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred CeEEEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 21 112357888888755 35566777788887777765543
No 183
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.40 E-value=2.6e-12 Score=96.51 Aligned_cols=72 Identities=39% Similarity=0.647 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
.++++|++++++|++.|+.|+|++|+.+|.+|++.|+++++.++++..++.+++++.+|++|+|.++..+..
T Consensus 3 ~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~ 74 (77)
T smart00745 3 DYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLE 74 (77)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478999999999999999999999999999999999999999999999999999999999999999998743
No 184
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=6.9e-12 Score=129.09 Aligned_cols=208 Identities=15% Similarity=0.193 Sum_probs=128.9
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE-Eec
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS-ISS 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~-v~~ 199 (436)
..|..++.|.++++|+|+++..+.|..++..... ...+...++|+||||||||++++.+|++++..++. .++
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~np 144 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNP 144 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhh
Confidence 4588899999999999999999999888754221 12233469999999999999999999998765533 221
Q ss_pred cc---hhhhh------------hchHHHHHHHHHHHHH----------hcCCeEEEEccccccccCCCCCCCchHHHHHH
Q 042771 200 SD---LVSKW------------MGESEKLVSSLFQMAR----------ESAPSIIFIDEIDSLCGQRGEGNESEASRRIK 254 (436)
Q Consensus 200 ~~---l~~~~------------~g~~~~~~~~~~~~a~----------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~ 254 (436)
.. ....+ .......+..++..+. .....|||||||+.++.. ....+
T Consensus 145 v~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r---------~~~~l 215 (637)
T TIGR00602 145 TLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR---------DTRAL 215 (637)
T ss_pred hhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh---------hHHHH
Confidence 10 00000 0112233334444433 124569999999987532 11123
Q ss_pred HHHHH-HhhcCCCCCCceEEEeccCCCC----------c----ccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCC
Q 042771 255 TELLV-QMQGVGHNDQKVLVLAATNTPY----------A----LDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTP 317 (436)
Q Consensus 255 ~~ll~-~l~~~~~~~~~v~vi~ttn~~~----------~----l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~ 317 (436)
..++. ... ......+|+++|..+. . |.+++++ |+ .+|.|.+.......+.|...+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 33333 211 1122223333332221 1 4478886 55 4789999999998777777775431
Q ss_pred C------CC-ChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 318 H------NL-TESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 318 ~------~~-~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
. .+ +++.+..|+....| |++.++...-+.+.
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~ 329 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQGCSG----DIRSAINSLQFSSS 329 (637)
T ss_pred hccccccccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHh
Confidence 1 11 45688888887777 99988877766543
No 185
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=1.8e-11 Score=118.67 Aligned_cols=149 Identities=26% Similarity=0.375 Sum_probs=101.7
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh--hhchHHH
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK--WMGESEK 212 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~--~~g~~~~ 212 (436)
++|.++++..+...+.. ..++||.||||||||++|+.+|..++.+|+.++|...... ..|...-
T Consensus 26 ~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 26 VVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhH
Confidence 77888887777665533 2679999999999999999999999999999998754321 1221111
Q ss_pred HHH------------HHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-------C--CCCCce
Q 042771 213 LVS------------SLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-------G--HNDQKV 271 (436)
Q Consensus 213 ~~~------------~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~--~~~~~v 271 (436)
... -+|... . +|+++|||+.. ...+.+.|+..|+.. . .-...+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~---~-~ill~DEInra------------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f 155 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAV---R-VILLLDEINRA------------PPEVQNALLEALEERQVTVPGLTTIRLPPPF 155 (329)
T ss_pred hhhhccCCeEEEecCCccccc---c-eEEEEeccccC------------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCC
Confidence 100 011111 1 39999999975 345567777777642 1 112457
Q ss_pred EEEeccC-----CCCcccHHHHhhccceEEcCCC-CHHHHHHHHHHHh
Q 042771 272 LVLAATN-----TPYALDQAIRRRFDKRIYIPLP-DLKARQHMFKVHL 313 (436)
Q Consensus 272 ~vi~ttn-----~~~~l~~~l~~Rf~~~i~~~~p-~~~~r~~il~~~l 313 (436)
+||+|+| ....+++++++||...+++++| +..+...++....
T Consensus 156 ~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 156 IVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 8888888 3468899999999889999999 4555555554443
No 186
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.39 E-value=1.4e-11 Score=127.58 Aligned_cols=54 Identities=37% Similarity=0.468 Sum_probs=46.7
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
..|..-|++++|++++++.+..++... .+++|+||||||||++++++++.++..
T Consensus 11 ~~~~~~~~~viG~~~a~~~l~~a~~~~--------------~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 11 PVPERLIDQVIGQEEAVEIIKKAAKQK--------------RNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred CcchhhHhhccCHHHHHHHHHHHHHcC--------------CCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 456778999999999999999877531 489999999999999999999998754
No 187
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.39 E-value=2.6e-12 Score=93.71 Aligned_cols=66 Identities=32% Similarity=0.447 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH----HHHHHHHHHHHhhhC
Q 042771 6 KEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFT----EYLRRAEEIRAVLDD 75 (436)
Q Consensus 6 ~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~----~y~~rae~lk~~l~~ 75 (436)
+++|++|+++|+..|+.|+|++|+.+|.+|+++|+. ++++..++.++.|+. +|++|||.||..+..
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l~~ 72 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----TSNETMDQALQTKLKQLARQALDRAEALKESMSK 72 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 679999999999999999999999999999999998 567787888888875 999999999999864
No 188
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.38 E-value=2.5e-11 Score=109.90 Aligned_cols=109 Identities=18% Similarity=0.163 Sum_probs=75.6
Q ss_pred CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC-------------CCcccHHHHhhc
Q 042771 225 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT-------------PYALDQAIRRRF 291 (436)
Q Consensus 225 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~-------------~~~l~~~l~~Rf 291 (436)
-|+||||||++.| .-+.+..|-..++. +-. .+||+++|+ |..+++.++.|+
T Consensus 296 vPGVLFIDEVhML------------DiEcFTyL~kalES---~ia-PivifAsNrG~~~irGt~d~~sPhGip~dllDRl 359 (456)
T KOG1942|consen 296 VPGVLFIDEVHML------------DIECFTYLHKALES---PIA-PIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRL 359 (456)
T ss_pred cCcceEeeehhhh------------hhHHHHHHHHHhcC---CCC-ceEEEecCCcceeecCCcCCCCCCCCCHHHhhhe
Confidence 3779999999977 22234444444442 222 345555554 367889999999
Q ss_pred cceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 292 DKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 292 ~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
.+|..-+++.++.++|++.........++++.+..|+.....-|-+-..+|+.-|...
T Consensus 360 -~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ 417 (456)
T KOG1942|consen 360 -LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASIL 417 (456)
T ss_pred -eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHH
Confidence 5777778888889999999998888889999999999886655554444444444333
No 189
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.38 E-value=3.4e-12 Score=111.07 Aligned_cols=114 Identities=25% Similarity=0.382 Sum_probs=77.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCC----ceEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEccccc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADS----TFFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDS 236 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~----~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~ 236 (436)
|..++||+||+|||||.+|+++|+.+.. +++.++++.+... ......+..+...+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4578999999999999999999999996 9999999988761 01111112211111 111123999999999
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEeccCCCC
Q 042771 237 LCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVLAATNTPY 281 (436)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~~ 281 (436)
..+. .....+.....+++.|+..+++-. ....+++||+|+|--.
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 9775 333344555688889999997431 2234789999998653
No 190
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.37 E-value=2.4e-11 Score=112.72 Aligned_cols=223 Identities=16% Similarity=0.259 Sum_probs=134.0
Q ss_pred cccCcHHHHHHHHH---HHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 134 DVAGLESAKQALQE---AVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 134 dl~G~~~~k~~L~~---~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
..+|...+++.|.. ++..|- .....++||+|++|.|||++++.+++.. .++++.+.+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~---------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~ 105 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPK---------RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPP 105 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCc---------ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCC
Confidence 35677766665554 444432 2334689999999999999999998764 24667765432
Q ss_pred hhh---hh-------------hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC
Q 042771 202 LVS---KW-------------MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG 265 (436)
Q Consensus 202 l~~---~~-------------~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 265 (436)
-.+ -| .......-..+....+..++.+|+|||+|.++.... .. ...+++.+..++
T Consensus 106 ~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-----~~----qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 106 EPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-----RK----QREFLNALKFLG 176 (302)
T ss_pred CCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH-----HH----HHHHHHHHHHHh
Confidence 111 00 011223333444556667788999999999764321 11 333444444433
Q ss_pred CCCC-ceEEEeccCC--CCcccHHHHhhccceEEcCCCC-HHHHHHHHHHHhC----CCCCCCCh-hhHHHHHHHcCCCC
Q 042771 266 HNDQ-KVLVLAATNT--PYALDQAIRRRFDKRIYIPLPD-LKARQHMFKVHLG----DTPHNLTE-SDFESLARKTEGFS 336 (436)
Q Consensus 266 ~~~~-~v~vi~ttn~--~~~l~~~l~~Rf~~~i~~~~p~-~~~r~~il~~~l~----~~~~~~~~-~~~~~la~~t~g~s 336 (436)
+.-. .++.++|... .-.-|+.+.+||. .+.+|... .++...++..+-. ..+..+.+ .....|-..+.|..
T Consensus 177 NeL~ipiV~vGt~~A~~al~~D~QLa~RF~-~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 177 NELQIPIVGVGTREAYRALRTDPQLASRFE-PFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred hccCCCeEEeccHHHHHHhccCHHHHhccC-CccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 3322 2333333211 1245789999995 66676633 2334445544432 22333444 44577888999876
Q ss_pred HHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCC
Q 042771 337 GSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQ 376 (436)
Q Consensus 337 ~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (436)
| +|..+++.|+..|++...+.........-.|+|.+.+.
T Consensus 256 G-~l~~ll~~aA~~AI~sG~E~It~~~l~~~~~~~ps~R~ 294 (302)
T PF05621_consen 256 G-ELSRLLNAAAIAAIRSGEERITREILDKIDWVPPSERR 294 (302)
T ss_pred H-HHHHHHHHHHHHHHhcCCceecHHHHhhCCCcChhhhh
Confidence 6 99999999999999988766555555666777766553
No 191
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.37 E-value=6e-12 Score=115.52 Aligned_cols=193 Identities=18% Similarity=0.229 Sum_probs=139.0
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc------e
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST------F 194 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~------~ 194 (436)
..|+..+++-.++|+++++++...+.++...+ ...++|+|||||||||+...+.|+.+-++ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 45778899999999999999999988864332 12399999999999999999999998663 1
Q ss_pred EEEeccchhhhhhchHHHHHHHHHHHHHh-------cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 042771 195 FSISSSDLVSKWMGESEKLVSSLFQMARE-------SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN 267 (436)
Q Consensus 195 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~~-------~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 267 (436)
..+++++-.+. + ....-...|...+. ..+..+++||+|.+. +..++.|-..++.+
T Consensus 97 lelnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT------------~~AQnALRRviek~--- 158 (360)
T KOG0990|consen 97 LELNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT------------RDAQNALRRVIEKY--- 158 (360)
T ss_pred HHhhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhh------------HHHHHHHHHHHHHh---
Confidence 22333332211 1 11112233444442 256799999999873 44455565555544
Q ss_pred CCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 268 DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 268 ~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
..++.|+..+|.+..+.+++++||. .+.|.+.+.......+.+.++......+++....++..+.| |++..++..
T Consensus 159 t~n~rF~ii~n~~~ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~g----Dmr~a~n~L 233 (360)
T KOG0990|consen 159 TANTRFATISNPPQKIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVG----DMRVALNYL 233 (360)
T ss_pred ccceEEEEeccChhhcCchhhcccc-cCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHH----HHHHHHHHH
Confidence 3456677889999999999999995 67788888888888899999888888888888888887766 777666554
Q ss_pred h
Q 042771 348 L 348 (436)
Q Consensus 348 ~ 348 (436)
-
T Consensus 234 q 234 (360)
T KOG0990|consen 234 Q 234 (360)
T ss_pred H
Confidence 3
No 192
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.36 E-value=1.5e-11 Score=124.10 Aligned_cols=145 Identities=23% Similarity=0.346 Sum_probs=91.2
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC------------------
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD------------------ 191 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~------------------ 191 (436)
..|+|+.|+..+++.+...+ ....+++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 37899999999988877644 2336899999999999999999987531
Q ss_pred ----------CceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 192 ----------STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 192 ----------~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
.+|...+++......+|.....-...+.. ...++|||||++.+ ...++..|+..|
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~l---A~~GvLfLDEi~e~------------~~~~~~~L~~~L 319 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISL---AHNGVLFLDELPEF------------KRSVLDALREPI 319 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhc---cCCCeEecCChhhC------------CHHHHHHHHHHH
Confidence 12222221111111111100000011222 23469999999986 234556666666
Q ss_pred hcCC----------CCCCceEEEeccCCC------C-----------------cccHHHHhhccceEEcCCCCHH
Q 042771 262 QGVG----------HNDQKVLVLAATNTP------Y-----------------ALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 262 ~~~~----------~~~~~v~vi~ttn~~------~-----------------~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
+.-. ....++.+|+++|.. . .+...|++||+..+.++.++..
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 5321 112468889999863 1 5888999999999999987755
No 193
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.35 E-value=8.5e-12 Score=130.91 Aligned_cols=260 Identities=13% Similarity=0.084 Sum_probs=144.4
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhc---------CCCCCCcceEEecCCcchHHHHHHHHHHHcC-------CceEEE
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFT---------GKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-------STFFSI 197 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~---------~~~~~~~~iLl~GppGtGKT~la~aia~~l~-------~~~~~v 197 (436)
.|.|++.+|+.|.-.+........-+. ...+...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 378999999988766644332111010 1123345899999999999999999998643 233333
Q ss_pred eccchhhhhhch-HHHHH-HHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC----------
Q 042771 198 SSSDLVSKWMGE-SEKLV-SSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG---------- 265 (436)
Q Consensus 198 ~~~~l~~~~~g~-~~~~~-~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------- 265 (436)
.+.......... .+..+ ... ......+++||||++.+. ......|+..|+.-.
T Consensus 531 gLTa~~~~~d~~tG~~~le~Ga---LvlAdgGtL~IDEidkms------------~~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGA---VVLANGGVCCIDELDKCH------------NESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhhhcccccCcccccCCc---EEEcCCCeEEecchhhCC------------HHHHHHHHHHHhCCEEEEecCCcce
Confidence 333221100000 00000 000 111234699999999873 233455555564321
Q ss_pred CCCCceEEEeccCCC-------------CcccHHHHhhccceE-EcCCCCHHHHHHHHHHHhCCC--------C------
Q 042771 266 HNDQKVLVLAATNTP-------------YALDQAIRRRFDKRI-YIPLPDLKARQHMFKVHLGDT--------P------ 317 (436)
Q Consensus 266 ~~~~~v~vi~ttn~~-------------~~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~~~--------~------ 317 (436)
.-..++.||+++|+. -.+++++++||+.++ .++.|+.+.-..|..+.+... .
T Consensus 596 tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~ 675 (915)
T PTZ00111 596 TLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTY 675 (915)
T ss_pred ecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccch
Confidence 113468899999985 267899999998664 457788777666655544210 0
Q ss_pred -------------------CCCChhhHHHHHHHcC-----CCCHHHHHHHHHHHhhhHHHhhhhh------hhhh-----
Q 042771 318 -------------------HNLTESDFESLARKTE-----GFSGSDISVCVKDVLFEPVRKTQDA------MFFF----- 362 (436)
Q Consensus 318 -------------------~~~~~~~~~~la~~t~-----g~s~~dl~~l~~~a~~~a~~~~~~~------~~~~----- 362 (436)
..++...+.....++. -++. +...++.+......++.... .+..
T Consensus 676 ~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~P~Ls~-eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~ 754 (915)
T PTZ00111 676 DRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCFPKLSD-EAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDD 754 (915)
T ss_pred hccccccccccccccccccCCCCHHHHHHHHHHHhccCCCCCCH-HHHHHHHHHHHHHhhhhcccccccccccccccccc
Confidence 0022233333222222 1233 22333333222211110000 0000
Q ss_pred ----hhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC
Q 042771 363 ----KTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR 414 (436)
Q Consensus 363 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ 414 (436)
...+....|.++|...++-|..++.|+-+++. .|+.+|+..|++-++
T Consensus 755 ~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~-----~Vt~~Dv~~Ai~L~~ 805 (915)
T PTZ00111 755 DLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLST-----VVTPADALQAVQIVK 805 (915)
T ss_pred ccccccccCCcccccHHHHHHHHHHHHHHhhhcCcC-----cccHHHHHHHHHHHH
Confidence 00112347889999999999999999988875 899999999987654
No 194
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.34 E-value=1.9e-11 Score=105.73 Aligned_cols=134 Identities=24% Similarity=0.307 Sum_probs=90.6
Q ss_pred CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-----------------------c
Q 042771 137 GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-----------------------T 193 (436)
Q Consensus 137 G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-----------------------~ 193 (436)
|++.+.+.|...+.. ...++.+||+||+|+||+++|.++|+.+-+ .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788899999887754 244477999999999999999999998632 2
Q ss_pred eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 194 FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 194 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
++.++....... -.-..++.+...+. .....|++|||+|.| .....+.||+.|+. ++.
T Consensus 70 ~~~~~~~~~~~~---i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEe---pp~ 131 (162)
T PF13177_consen 70 FIIIKPDKKKKS---IKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEE---PPE 131 (162)
T ss_dssp EEEEETTTSSSS---BSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHS---TTT
T ss_pred eEEEecccccch---hhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcC---CCC
Confidence 333333221000 11234444444432 235679999999998 45668999999994 567
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCC
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 300 (436)
++.+|.+|+.+..+.+.++||| ..+.|+..
T Consensus 132 ~~~fiL~t~~~~~il~TI~SRc-~~i~~~~l 161 (162)
T PF13177_consen 132 NTYFILITNNPSKILPTIRSRC-QVIRFRPL 161 (162)
T ss_dssp TEEEEEEES-GGGS-HHHHTTS-EEEEE---
T ss_pred CEEEEEEECChHHChHHHHhhc-eEEecCCC
Confidence 8999999999999999999999 47777654
No 195
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.34 E-value=2e-11 Score=119.56 Aligned_cols=146 Identities=24% Similarity=0.374 Sum_probs=91.5
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-------eEEEec----c
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------FFSISS----S 200 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------~~~v~~----~ 200 (436)
++++++.+...+.+...+.. ..+++|+||||||||++|+.+|..+... ++.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~~--------------~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--------------KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--------------CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 56777777777777665532 3689999999999999999999987531 222222 1
Q ss_pred chhhhh----hch--HHHHHHHHHHHHHhc--CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC--------
Q 042771 201 DLVSKW----MGE--SEKLVSSLFQMARES--APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-------- 264 (436)
Q Consensus 201 ~l~~~~----~g~--~~~~~~~~~~~a~~~--~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 264 (436)
+++..+ .|- ....+..+...|... .|.+||||||+.-. ..+++..++..|+.-
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan-----------i~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN-----------LSKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC-----------HHHhhhhhhhhccccccccccce
Confidence 222111 110 012233444555543 57899999999742 233444444444410
Q ss_pred -----------CCCCCceEEEeccCCCC----cccHHHHhhccceEEcCC-CCHH
Q 042771 265 -----------GHNDQKVLVLAATNTPY----ALDQAIRRRFDKRIYIPL-PDLK 303 (436)
Q Consensus 265 -----------~~~~~~v~vi~ttn~~~----~l~~~l~~Rf~~~i~~~~-p~~~ 303 (436)
-..+.++.||||+|..+ .+|.|++|||. .+.+.+ ++..
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~-fi~i~p~~~~~ 362 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFS-FIDIEPGFDTP 362 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhh-eEEecCCCChH
Confidence 12345799999999987 79999999994 666654 4433
No 196
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.33 E-value=5.4e-11 Score=114.73 Aligned_cols=191 Identities=19% Similarity=0.202 Sum_probs=121.0
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh----
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM---- 207 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~---- 207 (436)
|+|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 3555555555555443221 223579999999999999999998765 47999999987643211
Q ss_pred -chHHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCce
Q 042771 208 -GESEK-------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKV 271 (436)
Q Consensus 208 -g~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v 271 (436)
|.... ....+|..+ ..++||||||+.|. ..++..|+..++... ....++
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATAS------------LLVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCC------------HHHHHHHHHHHHcCcEEecCCCceeccce
Confidence 10000 000112222 45699999999983 334555666664321 112357
Q ss_pred EEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHH----HHHHHHHhC------CCC--CCCChhhHHHHHHHc
Q 042771 272 LVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKAR----QHMFKVHLG------DTP--HNLTESDFESLARKT 332 (436)
Q Consensus 272 ~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l~------~~~--~~~~~~~~~~la~~t 332 (436)
.+|++|+.. ..+.+.|..||. .+.+..|...+| ..++++++. ... ..++++.+..|..+.
T Consensus 136 RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~ 214 (329)
T TIGR02974 136 RLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYH 214 (329)
T ss_pred EEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCC
Confidence 788888754 245677888884 344555555444 334444442 122 467999999999999
Q ss_pred CCCCHHHHHHHHHHHhhhH
Q 042771 333 EGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 333 ~g~s~~dl~~l~~~a~~~a 351 (436)
+..+.++|+++++.++..+
T Consensus 215 WPGNvrEL~n~i~~~~~~~ 233 (329)
T TIGR02974 215 WPGNVRELKNVVERSVYRH 233 (329)
T ss_pred CCchHHHHHHHHHHHHHhC
Confidence 9889999999999988754
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=8.9e-11 Score=111.98 Aligned_cols=148 Identities=17% Similarity=0.204 Sum_probs=103.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc------------------------eEEEeccchhhhhhchHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST------------------------FFSISSSDLVSKWMGESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~------------------------~~~v~~~~l~~~~~g~~~~~~~~~~~ 219 (436)
+.++.+||+||+|+||+++|+++|+.+-+. ++.+.+.+ ++.. .-..++.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 445789999999999999999999987431 22222110 0101 1233444433
Q ss_pred HH----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceE
Q 042771 220 MA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRI 295 (436)
Q Consensus 220 ~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i 295 (436)
.+ ..+...|++||++|.|. ....+.||+.++ +++.++++|.+|+.+..+.++++||| ..+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~------------~~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC-~~~ 161 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLT------------EAAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRC-QTW 161 (325)
T ss_pred HHhhccccCCceEEEEechhhhC------------HHHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhc-eEE
Confidence 33 33455699999999983 445788999998 46778899999999999999999999 588
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCC
Q 042771 296 YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFS 336 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s 336 (436)
.|++|+.++..+.|..... .+......++..+.|-.
T Consensus 162 ~~~~~~~~~~~~~L~~~~~-----~~~~~~~~~~~l~~g~p 197 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQSS-----AEISEILTALRINYGRP 197 (325)
T ss_pred eCCCCCHHHHHHHHHHHhc-----cChHHHHHHHHHcCCCH
Confidence 9999999988888876532 12334555566666633
No 198
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.31 E-value=6.5e-12 Score=106.06 Aligned_cols=110 Identities=26% Similarity=0.399 Sum_probs=71.2
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh--hhchHHH-------HHHHHHHHHHhcCCeEEEEccccccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK--WMGESEK-------LVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~--~~g~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
+|||+||||||||+||+.+|+.++.+++.++++..... ..|...- .-..+..... .+.|++|||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccC-
Confidence 58999999999999999999999999999887653221 1110000 0000000111 4579999999975
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhcCCC----------CCC------ceEEEeccCCCC----cccHHHHhhc
Q 042771 239 GQRGEGNESEASRRIKTELLVQMQGVGH----------NDQ------KVLVLAATNTPY----ALDQAIRRRF 291 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~------~v~vi~ttn~~~----~l~~~l~~Rf 291 (436)
...++..|+..++.... ... ++.+|+|+|... .+++++++||
T Consensus 78 -----------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 -----------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred -----------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 34556666666663210 111 389999999998 9999999998
No 199
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=9.2e-11 Score=111.72 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---------------------eEEE
Q 042771 139 ESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST---------------------FFSI 197 (436)
Q Consensus 139 ~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~---------------------~~~v 197 (436)
+.+.+.|...+.. .+.++.+||+||+|+||+++|.++|+.+-+. ++.+
T Consensus 10 ~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i 78 (319)
T PRK08769 10 QRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLV 78 (319)
T ss_pred HHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEE
Confidence 4556666655432 2444789999999999999999999876432 1222
Q ss_pred --eccchhhhh-hchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc
Q 042771 198 --SSSDLVSKW-MGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 198 --~~~~l~~~~-~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
.+..-..+. ..-.-..++.+.+.+.. +...|++||++|.|. ....+.||+.++ +++.+
T Consensus 79 ~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLE---EPp~~ 143 (319)
T PRK08769 79 SFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN------------RAACNALLKTLE---EPSPG 143 (319)
T ss_pred ecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC------------HHHHHHHHHHhh---CCCCC
Confidence 110000000 00112334444444432 234699999999983 345788999998 45677
Q ss_pred eEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHH
Q 042771 271 VLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSD 339 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~d 339 (436)
+++|.+|+.++.+.|.++||| ..+.|+.|+.++....|... .++......++..+.|-.+..
T Consensus 144 ~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~------~~~~~~a~~~~~l~~G~p~~A 205 (319)
T PRK08769 144 RYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ------GVSERAAQEALDAARGHPGLA 205 (319)
T ss_pred CeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc------CCChHHHHHHHHHcCCCHHHH
Confidence 888889999999999999999 58889999998888777642 134555667777777754433
No 200
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.31 E-value=7.9e-11 Score=121.92 Aligned_cols=211 Identities=14% Similarity=0.170 Sum_probs=124.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC--ceEEEeccchhhhhhchHH--HHHH-H--HHH--HHHhcCCeEEEEcccccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSSDLVSKWMGESE--KLVS-S--LFQ--MARESAPSIIFIDEIDSL 237 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~~l~~~~~g~~~--~~~~-~--~~~--~a~~~~p~il~iDeid~l 237 (436)
.+|||.|+||||||++|+++++.++. +|+.+..........|... ..+. . .|. .......++||||||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 68999999999999999999998764 5888875332222233210 0000 0 000 001123459999999988
Q ss_pred ccCCCCCCCchHHHHHHHHHHHHhhcCC---------C-CCCceEEEeccCCCC---cccHHHHhhccceEEcC-CCCHH
Q 042771 238 CGQRGEGNESEASRRIKTELLVQMQGVG---------H-NDQKVLVLAATNTPY---ALDQAIRRRFDKRIYIP-LPDLK 303 (436)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~-~~~~v~vi~ttn~~~---~l~~~l~~Rf~~~i~~~-~p~~~ 303 (436)
. ..+++.|+..|+.-. . ...++.||+|+|..+ .+.++++.||...+.+. .|+.+
T Consensus 97 ~------------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~ 164 (589)
T TIGR02031 97 D------------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQD 164 (589)
T ss_pred C------------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHH
Confidence 3 345666777665321 1 123578889888765 78999999999877765 46788
Q ss_pred HHHHHHHHHhCCCCC------CCChhhHHHHHHHcCC--CCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCC
Q 042771 304 ARQHMFKVHLGDTPH------NLTESDFESLARKTEG--FSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPK 375 (436)
Q Consensus 304 ~r~~il~~~l~~~~~------~~~~~~~~~la~~t~g--~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 375 (436)
+|.+|++..+..... .+....+...-+.... .+...+..++..+....+ .+++
T Consensus 165 er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv-------------------~s~R 225 (589)
T TIGR02031 165 LRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGI-------------------SGHR 225 (589)
T ss_pred HHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCC-------------------CCcc
Confidence 899999887632110 0011112222222222 233333444444321110 1245
Q ss_pred CchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 376 QSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
......+.++.++.-+.. ..|+.+|+..|+.-+
T Consensus 226 a~i~~~r~ArA~Aal~gr-----~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 226 ADLFAVRAAKAHAALHGR-----TEVTEEDLKLAVELV 258 (589)
T ss_pred HHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Confidence 556666777777764332 479999999997654
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=1e-10 Score=112.69 Aligned_cols=153 Identities=16% Similarity=0.267 Sum_probs=106.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc------------------------eEEEeccch-hhhhhchHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST------------------------FFSISSSDL-VSKWMGESEKLVSSLF 218 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~------------------------~~~v~~~~l-~~~~~g~~~~~~~~~~ 218 (436)
+.++.+||+||+|+||+++|.++|+.+-+. ++.+.+..- ..-.+.+.......+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 455899999999999999999999987331 222222100 0001222222233333
Q ss_pred HHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcC
Q 042771 219 QMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIP 298 (436)
Q Consensus 219 ~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~ 298 (436)
.....+...|++||++|.|. ....+.||+.++ +++.++++|.+|+.+..+.+.++|||. .+.|+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~------------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~~ 165 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLT------------DAAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-LHYLA 165 (334)
T ss_pred hccccCCceEEEEcchHhhC------------HHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-cccCC
Confidence 33334456799999999983 445788999998 467789999999999999999999996 78999
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCH
Q 042771 299 LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 299 ~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
+|+.++....+.... .++......++..+.|-.+
T Consensus 166 ~~~~~~~~~~L~~~~-----~~~~~~a~~~~~la~G~~~ 199 (334)
T PRK07993 166 PPPEQYALTWLSREV-----TMSQDALLAALRLSAGAPG 199 (334)
T ss_pred CCCHHHHHHHHHHcc-----CCCHHHHHHHHHHcCCCHH
Confidence 999988888776432 1355566777788877443
No 202
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.30 E-value=6.2e-11 Score=122.43 Aligned_cols=196 Identities=20% Similarity=0.247 Sum_probs=131.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS 204 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~ 204 (436)
+..++++++|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~ 260 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE 260 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH
Confidence 44689999999988888777664421 223579999999999999999999875 57999999987643
Q ss_pred hhhchHHHHHHHHHHH---------------HHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---
Q 042771 205 KWMGESEKLVSSLFQM---------------ARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--- 266 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--- 266 (436)
... -..+|.. .....+++||||||+.|. ..++..|+..++....
T Consensus 261 ~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~------------~~~Q~~Ll~~l~~~~~~~~ 322 (534)
T TIGR01817 261 TLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEIS------------PAFQAKLLRVLQEGEFERV 322 (534)
T ss_pred HHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCC------------HHHHHHHHHHHhcCcEEEC
Confidence 211 1112111 112235699999999983 3345566666653210
Q ss_pred -----CCCceEEEeccCCC-------CcccHHHHhhcc-ceEEcCCCC--HHHHHHHHHHHhC------CCCCCCChhhH
Q 042771 267 -----NDQKVLVLAATNTP-------YALDQAIRRRFD-KRIYIPLPD--LKARQHMFKVHLG------DTPHNLTESDF 325 (436)
Q Consensus 267 -----~~~~v~vi~ttn~~-------~~l~~~l~~Rf~-~~i~~~~p~--~~~r~~il~~~l~------~~~~~~~~~~~ 325 (436)
...++.+|++|+.. ..+.+.|..|+. ..|.+|+.. .++...|+++++. ..+..++++.+
T Consensus 323 ~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~ 402 (534)
T TIGR01817 323 GGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAI 402 (534)
T ss_pred CCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 01246788887654 245567777774 345554433 2334445555543 12356899999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 326 ESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 326 ~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
..|..+.+.-+.++|+++++.++..+
T Consensus 403 ~~L~~~~WPGNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 403 RVLMSCKWPGNVRELENCLERTATLS 428 (534)
T ss_pred HHHHhCCCCChHHHHHHHHHHHHHhC
Confidence 99999999889999999999988654
No 203
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.29 E-value=8.1e-11 Score=113.58 Aligned_cols=195 Identities=18% Similarity=0.202 Sum_probs=126.1
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh--
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK-- 205 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~-- 205 (436)
.+++++|.....+.+.+.+.... ....+|||+|++||||+++|+++.... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 36678998877777777664421 223579999999999999999998765 469999999876321
Q ss_pred ---hhchHHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------C
Q 042771 206 ---WMGESEK-------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------N 267 (436)
Q Consensus 206 ---~~g~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~ 267 (436)
++|.... .....+.. ...+.|||||++.|. ..++..|+..++.... .
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~------------~~~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP------------MLVQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCC------------HHHHHHHHHHHhcCcEEeCCCCcee
Confidence 1111000 00111222 245699999999983 3345556665543210 0
Q ss_pred CCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHH----HHHHHHHhC----C--CC--CCCChhhHHHH
Q 042771 268 DQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKAR----QHMFKVHLG----D--TP--HNLTESDFESL 328 (436)
Q Consensus 268 ~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l~----~--~~--~~~~~~~~~~l 328 (436)
..++.||++|+.. ..+.+.|..||. .+.+..|...+| ..++.+++. . .. ..++++.+..|
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L 217 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETL 217 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHH
Confidence 1247788887654 356678888884 334444554444 334444432 1 11 35789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhhhH
Q 042771 329 ARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~a 351 (436)
..+.+..+.++|+.+++.++..+
T Consensus 218 ~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 218 LNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred HhCCCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999988643
No 204
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.28 E-value=1.3e-10 Score=119.08 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=131.8
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM 207 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~ 207 (436)
.+.+++|.....+.+.+.+... .....+|||+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 6788999998888888777542 1223679999999999999999998875 57999999988743211
Q ss_pred -----chHHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CC
Q 042771 208 -----GESEKL-------VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HN 267 (436)
Q Consensus 208 -----g~~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~ 267 (436)
|..... ....|.. ...+.||||||+.|. ..++..|+..++... ..
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~---a~gGtL~ldeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFEL---ADGGTLFLDEIGELP------------LALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhh---cCCCEEEecChhhCC------------HHHHHHHHHHHhcCCEeeCCCCcce
Confidence 100000 0012322 244689999999983 334555666554321 01
Q ss_pred CCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHhC-------CCCCCCChhhHHHHH
Q 042771 268 DQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHLG-------DTPHNLTESDFESLA 329 (436)
Q Consensus 268 ~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l~-------~~~~~~~~~~~~~la 329 (436)
..++.+|++|+.. ..+...|..|+. .+.+..|...+|.+ ++++++. .....+++..+..|.
T Consensus 320 ~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~ 398 (509)
T PRK05022 320 RVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALL 398 (509)
T ss_pred ecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHH
Confidence 1257788888765 245666777774 44555566555533 3343332 234568899999999
Q ss_pred HHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 330 RKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 330 ~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
.+.+..+.++|++++..|+..+..
T Consensus 399 ~y~WPGNvrEL~~~i~ra~~~~~~ 422 (509)
T PRK05022 399 AYDWPGNVRELEHVISRAALLARA 422 (509)
T ss_pred hCCCCCcHHHHHHHHHHHHHhcCC
Confidence 999999999999999999876543
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.28 E-value=4.6e-11 Score=100.24 Aligned_cols=123 Identities=30% Similarity=0.494 Sum_probs=82.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCc---eEEEeccchhhhh--------------hchHHHHHHHHHHHHHhcCCeEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADST---FFSISSSDLVSKW--------------MGESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~---~~~v~~~~l~~~~--------------~g~~~~~~~~~~~~a~~~~p~il 229 (436)
.+++|+||||||||++++.+|..+... ++.+++....... ..........++..+....+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 579999999999999999999999765 8888877543321 12345566788888888778999
Q ss_pred EEccccccccCCCCCCCchHHHHHHH----HHHHHhhcCCCCCCceEEEeccCC-CCcccHHHHhhccceEEcCCC
Q 042771 230 FIDEIDSLCGQRGEGNESEASRRIKT----ELLVQMQGVGHNDQKVLVLAATNT-PYALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 230 ~iDeid~l~~~~~~~~~~~~~~~~~~----~ll~~l~~~~~~~~~v~vi~ttn~-~~~l~~~l~~Rf~~~i~~~~p 300 (436)
+|||++.+..... ...... ...... .......+|+++|. ....+..+..|++..+.+..+
T Consensus 83 iiDei~~~~~~~~-------~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 83 ILDEITSLLDAEQ-------EALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEECCcccCCHHH-------HHHHHhhhhhHHHHHH----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 9999998853321 110000 000111 12345678888886 445556666688888777554
No 206
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.27 E-value=3.7e-11 Score=118.20 Aligned_cols=201 Identities=20% Similarity=0.279 Sum_probs=133.2
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.....+|++|+|.......+.+.+... .....+|||.|.+||||..+|++|-+.. +.||+.+||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 445679999999988888777766432 2344689999999999999999998876 679999999877
Q ss_pred hhhhhch-HHHHHHHHHHHHHhc---------CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-----C--
Q 042771 203 VSKWMGE-SEKLVSSLFQMARES---------APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-----G-- 265 (436)
Q Consensus 203 ~~~~~g~-~~~~~~~~~~~a~~~---------~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~-- 265 (436)
....... .-.+....|.-|... ..+.||+|||..|. ..++..||..++.- .
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgemp------------l~LQaKLLRVLQEkei~rvG~t 375 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMP------------LPLQAKLLRVLQEKEIERVGGT 375 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCC------------HHHHHHHHHHHhhceEEecCCC
Confidence 5432110 001111223223221 33599999999872 34456666665521 1
Q ss_pred -CCCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHh-------CCCCCCCChhhHH
Q 042771 266 -HNDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHL-------GDTPHNLTESDFE 326 (436)
Q Consensus 266 -~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l-------~~~~~~~~~~~~~ 326 (436)
...-+|.||++||.. ..+-..|.-|. .++.+..|...+|.+ +..+++ ......++++.+.
T Consensus 376 ~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~ 454 (560)
T COG3829 376 KPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALA 454 (560)
T ss_pred CceeeEEEEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHH
Confidence 123368999999974 12233344466 355666677666543 222222 2233447899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhh
Q 042771 327 SLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 327 ~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
.|.++.+.-+.++|++++..+..
T Consensus 455 ~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 455 LLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred HHHhCCCCchHHHHHHHHHHHHh
Confidence 99999999999999999999986
No 207
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.26 E-value=3.9e-11 Score=115.87 Aligned_cols=260 Identities=18% Similarity=0.209 Sum_probs=163.1
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHH
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEK 212 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~ 212 (436)
+|.|++++|+.|.-++.....+.- -.+ ..+.--+|+|.|.||+.||-|.+.+.+-.....+..... +..+|-+..
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~-~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAA 418 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSP-GDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAA 418 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCC-CCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchh
Confidence 488999999999888766443211 011 233345799999999999999999998776555543211 111222222
Q ss_pred HHHHHHH--------HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh--cCC-CCCCceEEEeccCCCC
Q 042771 213 LVSSLFQ--------MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ--GVG-HNDQKVLVLAATNTPY 281 (436)
Q Consensus 213 ~~~~~~~--------~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~--~~~-~~~~~v~vi~ttn~~~ 281 (436)
.++.-.. ...-...+|.+|||+|.+... +....-+++.+.-..+. |+. .-+.++.|++++|+.+
T Consensus 419 VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-----DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPay 493 (721)
T KOG0482|consen 419 VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-----DRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAY 493 (721)
T ss_pred hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-----hhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccc
Confidence 2211000 000114469999999998533 22334445544333332 221 1234677899998874
Q ss_pred -------------cccHHHHhhccceEE-cCCCCHHHHHHHHHHHhC----CCCCC-----CChhhHHHHH---HHcCCC
Q 042771 282 -------------ALDQAIRRRFDKRIY-IPLPDLKARQHMFKVHLG----DTPHN-----LTESDFESLA---RKTEGF 335 (436)
Q Consensus 282 -------------~l~~~l~~Rf~~~i~-~~~p~~~~r~~il~~~l~----~~~~~-----~~~~~~~~la---~~t~g~ 335 (436)
.|+.+|++||+..+. .+.|+.+.-..+.++..- ..... ++...+.+.. +.-..+
T Consensus 494 GRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~~~P~ 573 (721)
T KOG0482|consen 494 GRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKRKNPV 573 (721)
T ss_pred cccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhhcCCC
Confidence 778999999996554 466887777777666442 22211 3344444433 444556
Q ss_pred CHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 336 SGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 336 s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
.+.++..-+..|.....++.. .+..++..+++...++.|...++++-++++ .|..+|+.+|++..+-
T Consensus 574 vp~~l~dyi~~AYv~~Rrea~--------~~~~~t~ttpRtLL~IlRls~AlarLRls~-----~V~~~DV~EALRLme~ 640 (721)
T KOG0482|consen 574 VPEALADYITGAYVELRREAR--------SSKDFTYTTPRTLLGILRLSTALARLRLSD-----SVEEDDVNEALRLMEM 640 (721)
T ss_pred CCHHHHHHHHHHHHHHHHHhh--------ccCCCcccCHHHHHHHHHHHHHHHHhhhcc-----ccchhhHHHHHHHHHh
Confidence 677777777766665544443 234456788999999999999999988876 7999999999987653
No 208
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.26 E-value=1.1e-10 Score=118.53 Aligned_cols=195 Identities=19% Similarity=0.267 Sum_probs=124.9
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH-----------cCCceEEEe
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE-----------ADSTFFSIS 198 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~-----------l~~~~~~v~ 198 (436)
.+|++++|.....+.+.+.+...- ....+|||+|++||||+++|++|.+. .+.+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468999999988888877764321 22357999999999999999999877 357999999
Q ss_pred ccchhhhhh-----chHHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC
Q 042771 199 SSDLVSKWM-----GESEK--------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG 265 (436)
Q Consensus 199 ~~~l~~~~~-----g~~~~--------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~ 265 (436)
|..+..... |..+. .-..+|+.+ ..+.||||||+.|. ..++..|+..++...
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp------------~~~Q~kLl~~L~e~~ 350 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMP------------LPLQTRLLRVLEEKE 350 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCC------------HHHHHHHHhhhhcCe
Confidence 987643211 11000 001133333 34599999999983 334556666665321
Q ss_pred --------CCCCceEEEeccCCCC-------cccHHHHhhccceEEcCCCCHHHHH----HHHHHHhCC----CCCCCCh
Q 042771 266 --------HNDQKVLVLAATNTPY-------ALDQAIRRRFDKRIYIPLPDLKARQ----HMFKVHLGD----TPHNLTE 322 (436)
Q Consensus 266 --------~~~~~v~vi~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~~----~~~~~~~ 322 (436)
....++.+|++||..- .+.+.+..|+. .+.+..|...+|. .++++++.. ....++.
T Consensus 351 ~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~ 429 (538)
T PRK15424 351 VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLS-ILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSA 429 (538)
T ss_pred EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhc-CCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCH
Confidence 0112467888887541 23345555663 4556666665554 345555542 3333555
Q ss_pred hhH-------HHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 323 SDF-------ESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 323 ~~~-------~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
..+ ..|..+.+..+.++|++++++++..
T Consensus 430 ~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 430 ALRQGLQQCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 544 5677777888999999999998864
No 209
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.26 E-value=2.2e-10 Score=121.71 Aligned_cols=196 Identities=18% Similarity=0.300 Sum_probs=130.2
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK 205 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~ 205 (436)
+..|++++|.....+.+.+.+.... ....+|||+|++|||||++|+++.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3578899999988888777664321 222579999999999999999998765 579999999876322
Q ss_pred -----hhch--------HHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-------
Q 042771 206 -----WMGE--------SEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG------- 265 (436)
Q Consensus 206 -----~~g~--------~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 265 (436)
..|. ..... ..+.. ...++||||||+.|. ..+...|+..++...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~-g~le~---a~~GtL~Ldei~~L~------------~~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRI-GRFEL---ADKSSLFLDEVGDMP------------LELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred HhhhhhcCcccccccccccchh-hHHHh---cCCCeEEEechhhCC------------HHHHHHHHHHHHhCCEEeCCCC
Confidence 1111 01111 12332 234699999999983 334555666554321
Q ss_pred -CCCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHhC------CCC-CCCChhhHH
Q 042771 266 -HNDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHLG------DTP-HNLTESDFE 326 (436)
Q Consensus 266 -~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l~------~~~-~~~~~~~~~ 326 (436)
....++.+|++|+.. ..+...+..|+. .+.+..|...+|.+ ++++++. ... ..++++.+.
T Consensus 506 ~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~ 584 (686)
T PRK15429 506 KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLN-VFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLR 584 (686)
T ss_pred CcccceEEEEEeCCCCHHHHHHcCcccHHHHhccC-eeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 012357788888764 234455666663 55566677666644 4444432 122 247899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 327 SLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 327 ~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
.|..+.+-.+.++|+++++.|+..+
T Consensus 585 ~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 585 TLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 9999999999999999999998754
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=7.4e-11 Score=113.32 Aligned_cols=133 Identities=17% Similarity=0.171 Sum_probs=94.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCce-------------------------EEEeccchh---------------
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTF-------------------------FSISSSDLV--------------- 203 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~-------------------------~~v~~~~l~--------------- 203 (436)
+.++++||+||+|+||+++|+++|+.+.+.. +.+.+....
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 4558999999999999999999999875532 112111000
Q ss_pred ---hh----h-hchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCce
Q 042771 204 ---SK----W-MGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKV 271 (436)
Q Consensus 204 ---~~----~-~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 271 (436)
++ . ..-.-..++.+...+. .+...|++||++|.|. ....+.||+.++ +++.++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLE---EPp~~t 163 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN------------VAAANALLKTLE---EPPPGT 163 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC------------HHHHHHHHHHhc---CCCcCc
Confidence 00 0 0001123444444332 2344699999999983 345788999998 467788
Q ss_pred EEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHH
Q 042771 272 LVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVH 312 (436)
Q Consensus 272 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~ 312 (436)
++|.+|+.++.|.|+++||| ..+.|++|+.++..+.|...
T Consensus 164 ~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 164 VFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 99999999999999999999 58999999999998888764
No 211
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.24 E-value=1.7e-10 Score=117.29 Aligned_cols=195 Identities=22% Similarity=0.273 Sum_probs=125.6
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW 206 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~ 206 (436)
.+|++++|.....+.+.+.+...- ....+|||+|++||||+++|+++.+.. +.+|+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 568999999988888877664321 223579999999999999999998764 5799999998764321
Q ss_pred h-----chHHH--------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-------
Q 042771 207 M-----GESEK--------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH------- 266 (436)
Q Consensus 207 ~-----g~~~~--------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------- 266 (436)
. |..+. ....+|+.+ ..+.||||||+.|. ..++..|+..++....
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp------------~~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMP------------LPLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCC------------HHHHHHHHHHHhcCcEEecCCCc
Confidence 1 11000 011223333 34699999999983 3345556666543210
Q ss_pred -CCCceEEEeccCCCC-------cccHHHHhhccceEEcCCCCHHHHH----HHHHHHhCC----CCCCCChhhHHH---
Q 042771 267 -NDQKVLVLAATNTPY-------ALDQAIRRRFDKRIYIPLPDLKARQ----HMFKVHLGD----TPHNLTESDFES--- 327 (436)
Q Consensus 267 -~~~~v~vi~ttn~~~-------~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~~----~~~~~~~~~~~~--- 327 (436)
...++.+|++|+..- .+.+.+..|+. .+.+..|...+|. .++.+++.. ....+++..+..
T Consensus 344 ~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~ 422 (526)
T TIGR02329 344 PVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAG 422 (526)
T ss_pred eeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHH
Confidence 112457888887652 33445555663 3445556555543 344555432 233467777777
Q ss_pred ----HHHHcCCCCHHHHHHHHHHHhhh
Q 042771 328 ----LARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 328 ----la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
|..+.+..+.++|++++.+++..
T Consensus 423 ~~~~L~~y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 423 VADPLQRYPWPGNVRELRNLVERLALE 449 (526)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 88888888999999999998864
No 212
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.24 E-value=1.5e-10 Score=118.59 Aligned_cols=199 Identities=17% Similarity=0.242 Sum_probs=128.1
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLV 203 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~ 203 (436)
....+|++++|.....+.+.+.+...- .....|||+|++||||+++|+++.... +.+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456799999998877666665553211 122569999999999999999987654 4689999998864
Q ss_pred hhhh-----chHH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----C
Q 042771 204 SKWM-----GESE-------KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-----H 266 (436)
Q Consensus 204 ~~~~-----g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~ 266 (436)
.... |... .....+|+.+ ..+.||||||+.|. ..++..|+..++... .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~------------~~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMS------------PRMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCC------------HHHHHHHHHHHhcCCcccCCC
Confidence 3211 1000 0001123322 34699999999983 233455555554321 0
Q ss_pred ---CCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHH----HHHHHHhC----C---CCCCCChhhH
Q 042771 267 ---NDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQ----HMFKVHLG----D---TPHNLTESDF 325 (436)
Q Consensus 267 ---~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~----~---~~~~~~~~~~ 325 (436)
...++.||++|+.+ ..+.+.|..|+. .+.+..|...+|. .++++++. . ....++++.+
T Consensus 333 ~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~-~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~ 411 (520)
T PRK10820 333 DHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLN-VLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLN 411 (520)
T ss_pred CcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcC-eeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHH
Confidence 11246788887654 235577888874 4556666655554 23333332 1 2346789999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 326 ESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 326 ~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
..|..+.+.-+.++|++++..|+..+
T Consensus 412 ~~L~~y~WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 412 TVLTRYGWPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhC
Confidence 99999988889999999999988654
No 213
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=9.2e-10 Score=100.19 Aligned_cols=114 Identities=14% Similarity=0.188 Sum_probs=82.9
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccC------------CCCcccHHHHhhccc
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATN------------TPYALDQAIRRRFDK 293 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn------------~~~~l~~~l~~Rf~~ 293 (436)
|+||||||+|.|- - +-+..|-..+++ ...+++ |.+|| .|..++-.|+.|+ .
T Consensus 289 pGVLFIDEvHMLD--------I----EcFsFlNrAlE~---d~~Pii-imaTNrgit~iRGTn~~SphGiP~D~lDR~-l 351 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD--------I----ECFSFLNRALEN---DMAPII-IMATNRGITRIRGTNYRSPHGIPIDLLDRM-L 351 (454)
T ss_pred cceEEEeeehhhh--------h----HHHHHHHHHhhh---ccCcEE-EEEcCCceEEeecCCCCCCCCCcHHHhhhh-h
Confidence 6799999999772 1 112223233331 222333 33443 3468899999999 6
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 294 RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 294 ~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+|...+++.++...||+..+......++++.++.|......-+-+---.|+..|.+.+.++..
T Consensus 352 II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~ 414 (454)
T KOG2680|consen 352 IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG 414 (454)
T ss_pred eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 888889999999999999999988888999999999887777777767788888777777653
No 214
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.23 E-value=4.8e-10 Score=107.53 Aligned_cols=163 Identities=25% Similarity=0.346 Sum_probs=107.1
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec---------
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS--------- 199 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~--------- 199 (436)
+..|..++|++..|..|....+.| .-.++||.|+.||||||++|+++.-|.--.+...|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 457888999999999987654433 22689999999999999999999987422211111
Q ss_pred ----cc-------------------hhhhhhchHHH-HHHHH--HHHHH------------hcCCeEEEEccccccccCC
Q 042771 200 ----SD-------------------LVSKWMGESEK-LVSSL--FQMAR------------ESAPSIIFIDEIDSLCGQR 241 (436)
Q Consensus 200 ----~~-------------------l~~~~~g~~~~-~~~~~--~~~a~------------~~~p~il~iDeid~l~~~~ 241 (436)
.. +.....+.++. .+..+ -..++ ....+||+|||+..|
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---- 156 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---- 156 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc----
Confidence 11 11111223333 22111 11111 113459999999987
Q ss_pred CCCCCchHHHHHHHHHHHHhh---------cCCCC-CCceEEEeccCCC-CcccHHHHhhccceEEcCC-CCHHHHHHHH
Q 042771 242 GEGNESEASRRIKTELLVQMQ---------GVGHN-DQKVLVLAATNTP-YALDQAIRRRFDKRIYIPL-PDLKARQHMF 309 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~---------~~~~~-~~~v~vi~ttn~~-~~l~~~l~~Rf~~~i~~~~-p~~~~r~~il 309 (436)
...+++.||..+. |++.. ..++++|+|+|+. ..|-+.|+.||...+.+.. .+.++|.+|+
T Consensus 157 --------~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii 228 (423)
T COG1239 157 --------DDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEII 228 (423)
T ss_pred --------cHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHH
Confidence 3455666666554 23222 2368899999976 4889999999999998866 5588899999
Q ss_pred HHHhCC
Q 042771 310 KVHLGD 315 (436)
Q Consensus 310 ~~~l~~ 315 (436)
+..+..
T Consensus 229 ~r~~~f 234 (423)
T COG1239 229 RRRLAF 234 (423)
T ss_pred HHHHHh
Confidence 887654
No 215
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.23 E-value=1.6e-10 Score=122.03 Aligned_cols=195 Identities=14% Similarity=0.221 Sum_probs=129.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS 204 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~ 204 (436)
+..+|++++|.....+.+.+.+.... ....+|||+|++||||+++|+++.+.. +.+|+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 35579999998887777666554321 223569999999999999999998875 47999999987642
Q ss_pred hhhchHHHHHHHHHHH------------HHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC-----
Q 042771 205 KWMGESEKLVSSLFQM------------ARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN----- 267 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----- 267 (436)
. .....+|.. ......++||||||+.|. ..++..|+..++.-...
T Consensus 390 ~------~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~------------~~~Q~~Ll~~l~~~~~~~~~~~ 451 (638)
T PRK11388 390 E------ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLS------------PELQSALLQVLKTGVITRLDSR 451 (638)
T ss_pred H------HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCC
Confidence 1 111122221 111245699999999983 33455566665432100
Q ss_pred ---CCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHH----HHHHHHhC------CCCCCCChhhHHH
Q 042771 268 ---DQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQ----HMFKVHLG------DTPHNLTESDFES 327 (436)
Q Consensus 268 ---~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~----~il~~~l~------~~~~~~~~~~~~~ 327 (436)
.-++.+|+||+.. ..+.+.|..|+. .+.+..|...+|. .++++++. .....++++.+..
T Consensus 452 ~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~-~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~ 530 (638)
T PRK11388 452 RLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALH-AFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALAR 530 (638)
T ss_pred ceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhc-eeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHH
Confidence 1146788888764 234555556663 5666667766664 23444432 1234679999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 328 LARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 328 la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
|..+.+..+.++|+++++.++..+
T Consensus 531 L~~y~WPGNvreL~~~l~~~~~~~ 554 (638)
T PRK11388 531 LVSYRWPGNDFELRSVIENLALSS 554 (638)
T ss_pred HHcCCCCChHHHHHHHHHHHHHhC
Confidence 999998889999999999988643
No 216
>PRK08116 hypothetical protein; Validated
Probab=99.23 E-value=7.6e-11 Score=110.33 Aligned_cols=123 Identities=15% Similarity=0.238 Sum_probs=74.0
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch----HHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE----SEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~----~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
..+++|+|++|||||+||.++++++ +.+++.++..++...+... .......++.... ...+|+|||++...
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 3579999999999999999999986 7888999988776543211 1111222333332 33599999996421
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-Cc----ccHHHHhhc---cceEEcCCCCH
Q 042771 239 GQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-YA----LDQAIRRRF---DKRIYIPLPDL 302 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~~Rf---~~~i~~~~p~~ 302 (436)
..+.. ...|...++.... ....+|.|||.+ .. ++.++.+|+ ...|.+.-++.
T Consensus 192 -------~t~~~---~~~l~~iin~r~~--~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 -------DTEWA---REKVYNIIDSRYR--KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred -------CCHHH---HHHHHHHHHHHHH--CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 11222 3334444443211 123466777765 33 467788874 34566666664
No 217
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.23 E-value=3.2e-11 Score=123.76 Aligned_cols=255 Identities=19% Similarity=0.192 Sum_probs=144.2
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe----ccchhhhh
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS----SSDLVSKW 206 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~----~~~l~~~~ 206 (436)
-.|.|++.+|+.|.-.+...... .... ..+.--++||.|.||||||.|.+.+++.+...++.-. +..|....
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k--~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav 363 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKK--NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAV 363 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcc--cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEE
Confidence 45889999999987755443221 1111 1233368999999999999999999998765544321 11111000
Q ss_pred hchHHHHHHHHHH---HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-------C---CCCCceEE
Q 042771 207 MGESEKLVSSLFQ---MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-------G---HNDQKVLV 273 (436)
Q Consensus 207 ~g~~~~~~~~~~~---~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~---~~~~~v~v 273 (436)
... .......- ......++|++|||+|.+... -...+...|+.. . ..+.++.|
T Consensus 364 ~rd--~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~------------dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 364 VRD--KVTGEWVLEAGALVLADGGVCCIDEFDKMNEE------------DRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred EEc--cCCCeEEEeCCEEEEecCCEEEEEeccCCChH------------HHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 000 00000000 001125679999999987321 122333333311 1 12345678
Q ss_pred EeccCCCC-------------cccHHHHhhccceEEc-CCCCHHHHHHHHHHHhCCCCCCC----------------Chh
Q 042771 274 LAATNTPY-------------ALDQAIRRRFDKRIYI-PLPDLKARQHMFKVHLGDTPHNL----------------TES 323 (436)
Q Consensus 274 i~ttn~~~-------------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~~l~~~~~~~----------------~~~ 323 (436)
++++|+.+ +++++|++|||.++.+ +.|+.+.-..+..+.+....... +.+
T Consensus 430 LAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~ 509 (682)
T COG1241 430 LAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFE 509 (682)
T ss_pred hhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHH
Confidence 99999884 6789999999977655 45777666666665554322111 111
Q ss_pred hHHHHHHHcCC-C---CHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCC
Q 042771 324 DFESLARKTEG-F---SGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPP 399 (436)
Q Consensus 324 ~~~~la~~t~g-~---s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (436)
.+.....++.. . -..+....+.+......+.... .......|.+.|...++-|..++.|+-.+++
T Consensus 510 ~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~------~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS~----- 578 (682)
T COG1241 510 LLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSAL------VEEKRTIPITARQLESIIRLAEAHAKMRLSD----- 578 (682)
T ss_pred HHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhcccc------ccccCcccccHHHHHHHHHHHHHHHhhhccC-----
Confidence 23333322221 1 1122223333322222111100 0123457888999999999999999988875
Q ss_pred CcCHHHHHHHHhhCC
Q 042771 400 PISKTDFDKVLARQR 414 (436)
Q Consensus 400 ~vt~~d~~~al~~~~ 414 (436)
.|+.+|+++|++.+.
T Consensus 579 ~V~~eD~~eAi~lv~ 593 (682)
T COG1241 579 VVEEEDVDEAIRLVD 593 (682)
T ss_pred CCCHHHHHHHHHHHH
Confidence 899999999988765
No 218
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.22 E-value=2.5e-10 Score=112.43 Aligned_cols=199 Identities=19% Similarity=0.279 Sum_probs=138.2
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW 206 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~ 206 (436)
..+.+++|...+.+.|.+.+... .....+|||+|++||||-.+|++|.+.. +.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 46788999999999888877432 1233679999999999999999998876 5699999998875331
Q ss_pred -----hchHHHH-------HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-----CC---
Q 042771 207 -----MGESEKL-------VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-----GH--- 266 (436)
Q Consensus 207 -----~g~~~~~-------~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~--- 266 (436)
+|..... -...|+.| ..+.||||||..|. ..++..||..+..- ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp------------l~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP------------LELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC------------HHHHHHHHHHHHcCeeEecCCCcc
Confidence 1110000 00122222 45699999999873 34455666666522 11
Q ss_pred CCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHhC-------CCCCCCChhhHHHH
Q 042771 267 NDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHLG-------DTPHNLTESDFESL 328 (436)
Q Consensus 267 ~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l~-------~~~~~~~~~~~~~l 328 (436)
-.-+|.||++||.. ..+-+.|.-|+ .++.+..|...+|.+ ++++++. .....+++..+..|
T Consensus 273 i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L 351 (464)
T COG2204 273 IKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAAL 351 (464)
T ss_pred cceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 12268899999875 24456677788 577888888777755 4444442 34556789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhhhHHHh
Q 042771 329 ARKTEGFSGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~a~~~ 354 (436)
..+.+--+.++|++++..++...-..
T Consensus 352 ~~y~WPGNVREL~N~ver~~il~~~~ 377 (464)
T COG2204 352 LAYDWPGNVRELENVVERAVILSEGP 377 (464)
T ss_pred HhCCCChHHHHHHHHHHHHHhcCCcc
Confidence 99999889999999999998766443
No 219
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.21 E-value=3.3e-10 Score=107.82 Aligned_cols=129 Identities=16% Similarity=0.176 Sum_probs=93.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc-----------------------eEEEeccchhhhhhchHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST-----------------------FFSISSSDLVSKWMGESEKLVSSLFQM 220 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~-----------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~ 220 (436)
+.++.+||+||.|+||+++|+++|+.+-+. ++.+.+..- ++.. .-..++.+...
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKE-GKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcC-CCcC--CHHHHHHHHHH
Confidence 445789999999999999999999986331 223322110 0001 12234444333
Q ss_pred H----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEE
Q 042771 221 A----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIY 296 (436)
Q Consensus 221 a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~ 296 (436)
+ ..+...|++||++|.|. ....+.||+.++ +++.++++|.+|+.+..+.|.++||| ..+.
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~------------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~ 163 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMN------------ESASNALLKTLE---EPAPNCLFLLVTHNQKRLLPTIVSRC-QQWV 163 (319)
T ss_pred HhhCcccCCceEEEecchhhhC------------HHHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhcc-eeEe
Confidence 3 23345699999999983 445788999998 46778999999999999999999999 4889
Q ss_pred cCCCCHHHHHHHHHH
Q 042771 297 IPLPDLKARQHMFKV 311 (436)
Q Consensus 297 ~~~p~~~~r~~il~~ 311 (436)
|+.|+.++..+.+..
T Consensus 164 ~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 164 VTPPSTAQAMQWLKG 178 (319)
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999988887765
No 220
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.21 E-value=5.1e-10 Score=106.99 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=48.7
Q ss_pred ccc-cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-------ceEEEec
Q 042771 131 KWN-DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-------TFFSISS 199 (436)
Q Consensus 131 ~~~-dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-------~~~~v~~ 199 (436)
-|+ +++|+++++.++.+++.... .+.....+.++|+|||||||||||+++++.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 89999999999988775432 122233467999999999999999999999865 6777654
No 221
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.21 E-value=1.9e-10 Score=111.22 Aligned_cols=201 Identities=19% Similarity=0.196 Sum_probs=127.2
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH----cCCceEEEeccchhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE----ADSTFFSISSSDLVS 204 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~----l~~~~~~v~~~~l~~ 204 (436)
...+++++|....-+.+.+.+... .....++|++|++||||+.+|+.|... ...||+.+||..+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~----------ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAY----------APSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhh----------CCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 346888999877777666655431 133367999999999999999999744 367999999998754
Q ss_pred hhhchH------------HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-----CC-
Q 042771 205 KWMGES------------EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-----GH- 266 (436)
Q Consensus 205 ~~~g~~------------~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-----~~- 266 (436)
...... ...-..+|+.| ..++||+|||+.|.. ..+..|+..++.. ..
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A---~GGtLfLDEI~~LP~------------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQA---NGGTLFLDEIHRLPP------------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheec---CCCEEehhhhhhCCH------------hHHHHHHHHHHcCceEecCCC
Confidence 322110 00011222322 345999999999843 3456677777742 11
Q ss_pred --CCCceEEEeccCCC--CcccH--HHHh-hccceEEcCCCCHHHH----HHHHHHHhC----CCCC---CCChhhHHHH
Q 042771 267 --NDQKVLVLAATNTP--YALDQ--AIRR-RFDKRIYIPLPDLKAR----QHMFKVHLG----DTPH---NLTESDFESL 328 (436)
Q Consensus 267 --~~~~v~vi~ttn~~--~~l~~--~l~~-Rf~~~i~~~~p~~~~r----~~il~~~l~----~~~~---~~~~~~~~~l 328 (436)
...+|.+|++|+.. ..+-. .+.+ |+...|.+ |+..+| ..++++++. .... ..++..+..|
T Consensus 209 ~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~L--PpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L 286 (403)
T COG1221 209 QPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTITL--PPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRAL 286 (403)
T ss_pred CCcCCCceeeeccccCHHHHHHhhcchhhhhcCceecC--CChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 23368888888642 23333 4555 55555555 554444 345555543 2222 2234667788
Q ss_pred HHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 329 ARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
-.+..--+.++|+++|+.++..+.....
T Consensus 287 ~~y~~pGNirELkN~Ve~~~~~~~~~~~ 314 (403)
T COG1221 287 LAYDWPGNIRELKNLVERAVAQASGEGQ 314 (403)
T ss_pred HhCCCCCcHHHHHHHHHHHHHHhccccC
Confidence 8887777899999999999988754443
No 222
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=3.6e-11 Score=116.77 Aligned_cols=148 Identities=24% Similarity=0.294 Sum_probs=89.3
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC----ceEE------Eec
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS----TFFS------ISS 199 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~----~~~~------v~~ 199 (436)
..|.||+|++.+|+.|..+.. ..+++||+||||||||+||+.+..-+.- .+++ +..
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 378999999999999988663 3479999999999999999999765420 0011 100
Q ss_pred cchhh-------h--hhchHHHHHHHHHH--------HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh
Q 042771 200 SDLVS-------K--WMGESEKLVSSLFQ--------MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 200 ~~l~~-------~--~~g~~~~~~~~~~~--------~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~ 262 (436)
..... . ..+.+.. ...+.. .+.....+||||||+-.+ .+.+++.|..=|+
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS-~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef------------~~~iLe~LR~PLE 308 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSAS-LAALVGGGGVPRPGEISLAHNGVLFLDELPEF------------KRSILEALREPLE 308 (490)
T ss_pred cccccCccceeCCccCCCccch-HHHHhCCCCCCCCCceeeecCCEEEeeccchh------------hHHHHHHHhCccc
Confidence 00000 0 0000000 000000 001113359999998764 4466666666555
Q ss_pred cCC----C------CCCceEEEeccCCC-----------------------CcccHHHHhhccceEEcCCCCHHH
Q 042771 263 GVG----H------NDQKVLVLAATNTP-----------------------YALDQAIRRRFDKRIYIPLPDLKA 304 (436)
Q Consensus 263 ~~~----~------~~~~v~vi~ttn~~-----------------------~~l~~~l~~Rf~~~i~~~~p~~~~ 304 (436)
.-. . -..++.+|+++|.. ..+...|++|+|..+.++.++..+
T Consensus 309 ~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 309 NGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred cCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 321 0 12246677888766 356678899999999998877444
No 223
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.6e-10 Score=109.28 Aligned_cols=163 Identities=25% Similarity=0.355 Sum_probs=114.9
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE-eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI-SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v-~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 241 (436)
..+-.++||.||||+|||+||..+|...+.||+.+ ++.++.+..-...-..+..+|+.|.+..-+||++|+|+.|..-.
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYV 614 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhccc
Confidence 44557899999999999999999999999999986 45555443222334568899999999999999999999986543
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc-HHHHhhccceEEcCCCCH-HHHHHHHHHHhCCCCCC
Q 042771 242 GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD-QAIRRRFDKRIYIPLPDL-KARQHMFKVHLGDTPHN 319 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~-~~l~~Rf~~~i~~~~p~~-~~r~~il~~~l~~~~~~ 319 (436)
.- .-..++.++..|+..+........+.+|++||....-|. -.+...|+..+.+|..+. ++...++... ..
T Consensus 615 pI--GPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~-----n~ 687 (744)
T KOG0741|consen 615 PI--GPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEEL-----NI 687 (744)
T ss_pred cc--CchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHHc-----cC
Confidence 22 123566777888888877655556788888887654433 245668999999987654 5556665542 11
Q ss_pred CChhhHHHHHHHc
Q 042771 320 LTESDFESLARKT 332 (436)
Q Consensus 320 ~~~~~~~~la~~t 332 (436)
+++.+...+++..
T Consensus 688 fsd~~~~~~~~~~ 700 (744)
T KOG0741|consen 688 FSDDEVRAIAEQL 700 (744)
T ss_pred CCcchhHHHHHHH
Confidence 3455555555443
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.19 E-value=1.6e-09 Score=109.15 Aligned_cols=202 Identities=18% Similarity=0.239 Sum_probs=132.7
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc----------CCceEEEeccchhhh---h-------hchH------HHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA----------DSTFFSISSSDLVSK---W-------MGES------EKLVSSLFQ 219 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l----------~~~~~~v~~~~l~~~---~-------~g~~------~~~~~~~~~ 219 (436)
+..+++.|-||||||.+++.+-+++ ...++.+|+-.+.+. | .|+. -..+..-|.
T Consensus 422 g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~ 501 (767)
T KOG1514|consen 422 GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFT 501 (767)
T ss_pred ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhc
Confidence 3579999999999999999998865 346777887665432 1 1110 011111122
Q ss_pred HH-HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc----HHHHhhcc-c
Q 042771 220 MA-RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD----QAIRRRFD-K 293 (436)
Q Consensus 220 ~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~----~~l~~Rf~-~ 293 (436)
.. ....++||+|||+|.|+... +..|.+.++.....+.+++||+.+|..+... ..+.+|++ .
T Consensus 502 ~~k~~~~~~VvLiDElD~Lvtr~------------QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~t 569 (767)
T KOG1514|consen 502 VPKPKRSTTVVLIDELDILVTRS------------QDVLYNIFDWPTLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLT 569 (767)
T ss_pred cCCCCCCCEEEEeccHHHHhccc------------HHHHHHHhcCCcCCCCceEEEEecccccCHHHHhccchhhhccce
Confidence 00 22367899999999997654 4456666777767778899999888765332 23334655 5
Q ss_pred eEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHH---HHHHHHHhhhHHHhhhhhhhhhhhcCCCcc
Q 042771 294 RIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDI---SVCVKDVLFEPVRKTQDAMFFFKTSNGMWM 370 (436)
Q Consensus 294 ~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl---~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~ 370 (436)
.+.|.+++.++..+|+...+... ..+....++.+|+.....|| |. -.+|++|.-.+-.+....
T Consensus 570 Ri~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSG-DaRraldic~RA~Eia~~~~~~~------------ 635 (767)
T KOG1514|consen 570 RICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSG-DARRALDICRRAAEIAEERNVKG------------ 635 (767)
T ss_pred eeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhhhcccc------------
Confidence 78899999999999999999876 33566777777777665555 33 355666665554443210
Q ss_pred CCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 371 PCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
.......|++.||.+|+..+.-+
T Consensus 636 -----------------------k~~~~q~v~~~~v~~Ai~em~~~ 658 (767)
T KOG1514|consen 636 -----------------------KLAVSQLVGILHVMEAINEMLAS 658 (767)
T ss_pred -----------------------cccccceeehHHHHHHHHHHhhh
Confidence 01122578999999998876543
No 225
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.18 E-value=5.3e-10 Score=112.44 Aligned_cols=235 Identities=18% Similarity=0.222 Sum_probs=128.6
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC----ceEEEec------
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS----TFFSISS------ 199 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~----~~~~v~~------ 199 (436)
..|.++.|+..+++.+.-.+ ....+++|+||||+|||++++.++..+.. ..+.+..
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 36788899988887764322 23468999999999999999999876521 1111110
Q ss_pred c-----c-----hhhh--------hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh
Q 042771 200 S-----D-----LVSK--------WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM 261 (436)
Q Consensus 200 ~-----~-----l~~~--------~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l 261 (436)
. . |... .+|.....-...+..| ..++|||||++.+ ...++..|+..|
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~------------~~~~~~~L~~~L 318 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEF------------ERRTLDALREPI 318 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhC------------CHHHHHHHHHHH
Confidence 0 0 0000 0111100001122333 3459999999876 234566666666
Q ss_pred hcCCC----------CCCceEEEeccCCCC---------------------cccHHHHhhccceEEcCCCCHHHHHHHHH
Q 042771 262 QGVGH----------NDQKVLVLAATNTPY---------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFK 310 (436)
Q Consensus 262 ~~~~~----------~~~~v~vi~ttn~~~---------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~ 310 (436)
+.-.. ...++.+|+|+|... .++.++++||+..+.++.|+.++..
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~---- 394 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILS---- 394 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHh----
Confidence 43211 134688999998752 4778999999999999999866321
Q ss_pred HHhCCCCCCCChhhHHHHH-------H---H-cCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchh
Q 042771 311 VHLGDTPHNLTESDFESLA-------R---K-TEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGA 379 (436)
Q Consensus 311 ~~l~~~~~~~~~~~~~~la-------~---~-t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (436)
.... .... +....+.+. . . -.-.++..+...|.- .....+.... ......+|.|....
T Consensus 395 ~~~~-~~es-s~~i~~rV~~ar~~q~~r~~~~n~~l~~~~l~~~~~l--~~~~~~~l~~-------~~~~~~lS~Ra~~r 463 (506)
T PRK09862 395 KTVV-PGES-SATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKL--ESEDARWLEE-------TLIHLGLSIRAWQR 463 (506)
T ss_pred cccC-CCCC-hHHHHHHHhhHHHHHHHHHHHHhcccCHHHHHHHhCC--CHHHHHHHHH-------HHHHcCCCHHHHHH
Confidence 1000 0000 111111110 0 0 111233344332211 0011110000 00112367778888
Q ss_pred hHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 380 VQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
+.+.++.+|.-+.. ..|+.+|+.+|+.--
T Consensus 464 lLrvARTiADL~g~-----~~V~~~hv~eAl~yR 492 (506)
T PRK09862 464 LLKVARTIADIDQS-----DIITRQHLQEAVSYR 492 (506)
T ss_pred HHHHHHHHHHHcCC-----CCCCHHHHHHHHHhh
Confidence 88888888875443 479999999999743
No 226
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.18 E-value=2.4e-11 Score=98.14 Aligned_cols=106 Identities=32% Similarity=0.423 Sum_probs=60.2
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEecc-chh-hhhhch----HHH-----HHHHHHHHHHhcCCeEEEEccccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSS-DLV-SKWMGE----SEK-----LVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~-~l~-~~~~g~----~~~-----~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
|+||+|+||+|||++|+++|+.++..|.+|.+. ++. ++..|. ... .-.-+| ..|+++|||+.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 589999999999999999999999999988764 222 111111 000 000111 24999999997
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEeccCCCC-----cccHHHHhhcc
Q 042771 237 LCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVLAATNTPY-----ALDQAIRRRFD 292 (436)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~ 292 (436)
. ..++++.|+..|.... .-...++||+|.|+.+ .|++++++||-
T Consensus 74 a------------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 A------------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred C------------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 5 4556778888776431 1234578888888764 88999999983
No 227
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.15 E-value=1.3e-09 Score=110.51 Aligned_cols=209 Identities=16% Similarity=0.236 Sum_probs=127.6
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe-c
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS-S 199 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~-~ 199 (436)
..|+.++.|.+.+||+-+..-.+.++.++...+. +..+.+-+||+||||||||++++.+|++++..+.... +
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 4688999999999999998888888887754221 1223357899999999999999999999998877643 2
Q ss_pred cchh------hhhhc----------hHHHHHHHH-HHHHHh-----------cCCeEEEEccccccccCCCCCCCchHHH
Q 042771 200 SDLV------SKWMG----------ESEKLVSSL-FQMARE-----------SAPSIIFIDEIDSLCGQRGEGNESEASR 251 (436)
Q Consensus 200 ~~l~------~~~~g----------~~~~~~~~~-~~~a~~-----------~~p~il~iDeid~l~~~~~~~~~~~~~~ 251 (436)
..+. ..+.+ .... ...+ +...+. ..+.||+|||+-.++... ..
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~-F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~--------~~ 150 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDK-FSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD--------TS 150 (519)
T ss_pred CCccccccccccccccccccccccchhhh-hccccccccccccccccCCCcCCCceEEEeeccccccchh--------HH
Confidence 2210 01111 1111 1111 111111 245699999998764321 23
Q ss_pred HHHHHHHHHhhcCCCCCCceEEEecc-------CCCC--------cccHHHHh--hccceEEcCCCCHHHHHHHHHHHhC
Q 042771 252 RIKTELLVQMQGVGHNDQKVLVLAAT-------NTPY--------ALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLG 314 (436)
Q Consensus 252 ~~~~~ll~~l~~~~~~~~~v~vi~tt-------n~~~--------~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~ 314 (436)
.+...|...+... ...+++||.+- |... .+++.++. ++ ..|.|.+-...-..+.|...+.
T Consensus 151 ~f~~~L~~~l~~~--~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 151 RFREALRQYLRSS--RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILK 227 (519)
T ss_pred HHHHHHHHHHHcC--CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHH
Confidence 3444444444321 11145555551 1111 35677776 34 5778877776666666655544
Q ss_pred CC------CCCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 315 DT------PHNLT--ESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 315 ~~------~~~~~--~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
.. ....+ ...++.|+..+.| ||+.++....+.+.
T Consensus 228 ~E~~~~~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 228 KEARSSSGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred HHhhhhcCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 22 11122 3358899988877 99999998887776
No 228
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.14 E-value=5.3e-10 Score=111.88 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=131.3
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec----cchhhh--h
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS----SDLVSK--W 206 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~----~~l~~~--~ 206 (436)
.|.|++.+|+.|.-.+...-. .+.-+. ..+.--+|||+|.||||||.+.+.+++-+..-.+.-.- ..+... .
T Consensus 430 sIye~edvKkglLLqLfGGt~-k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGTR-KEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhcccchhhhHHHHHhcCCc-ccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 377899999887664433221 111111 12333689999999999999999999987543332110 000000 0
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHh--hcC-CCCCCceEEEeccCCCC--
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQM--QGV-GHNDQKVLVLAATNTPY-- 281 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l--~~~-~~~~~~v~vi~ttn~~~-- 281 (436)
.+++...+.+ -........+|.+|||||+|... ..+..-+++.+--..+ .|+ ..-+.+.-|++++|+..
T Consensus 509 d~dtkqlVLe-sGALVLSD~GiCCIDEFDKM~dS-----trSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~sk 582 (804)
T KOG0478|consen 509 DPDTRQLVLE-SGALVLSDNGICCIDEFDKMSDS-----TRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSK 582 (804)
T ss_pred cCccceeeee-cCcEEEcCCceEEchhhhhhhHH-----HHHHHHHHHHHhhhhHhhcceeeeccccceeeeeecccccc
Confidence 0000000000 00001124569999999998322 1122222222211111 122 12244677999998652
Q ss_pred -----------cccHHHHhhccceE-EcCCCCHHHHHHHHHHHhCCCCC---CCChhh-----HHHHHHHcCCCCHHHHH
Q 042771 282 -----------ALDQAIRRRFDKRI-YIPLPDLKARQHMFKVHLGDTPH---NLTESD-----FESLARKTEGFSGSDIS 341 (436)
Q Consensus 282 -----------~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~~~~~---~~~~~~-----~~~la~~t~g~s~~dl~ 341 (436)
.|++.|+|||+.++ .++.||...-+.|..+...-+.. .-.++. +...+..+..--..++.
T Consensus 583 ynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~ 662 (804)
T KOG0478|consen 583 YNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALS 662 (804)
T ss_pred CCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCcccc
Confidence 67899999999665 45677776455555544332111 111111 22222222211111221
Q ss_pred HHHHHHhhhHHHhhhhhhhhhhhcCCC-ccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 342 VCVKDVLFEPVRKTQDAMFFFKTSNGM-WMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 342 ~l~~~a~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
.-..+++..++...+. ..... .....++....+-+..+..++..++. .|...|+++|+.-.
T Consensus 663 ~ea~~~l~~ayvd~rk------~~~~~~~itat~rQlesLiRlsEahak~r~s~-----~ve~~dV~eA~~l~ 724 (804)
T KOG0478|consen 663 PEASQALIQAYVDMRK------IGEGAGQITATPRQLESLIRLSEAHAKMRLSN-----RVEEIDVEEAVRLL 724 (804)
T ss_pred HHHHHHHHHHhhhhhh------hcccccccchhHHHHHHHHHHHHHHHHhhccc-----ccchhhHHHHHHHH
Confidence 2222222222222221 11111 24456667777777777777776664 78889999997654
No 229
>PRK12377 putative replication protein; Provisional
Probab=99.12 E-value=6.5e-10 Score=102.31 Aligned_cols=145 Identities=17% Similarity=0.176 Sum_probs=83.0
Q ss_pred ccccCCCCcccccc----CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceE
Q 042771 123 IIREKPNVKWNDVA----GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFF 195 (436)
Q Consensus 123 ~~~~~~~~~~~dl~----G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~ 195 (436)
+.......+|+.+. |+..+......++... . ....+++|+||||||||+||.++++.+ +..++
T Consensus 64 i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~-------~---~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 64 IQPLHRKCSFANYQVQNDGQRYALSQAKSIADEL-------M---TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CCcccccCCcCCcccCChhHHHHHHHHHHHHHHH-------H---hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 44455667888875 3333444444443221 1 123589999999999999999999987 67788
Q ss_pred EEeccchhhhhhchH--HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEE
Q 042771 196 SISSSDLVSKWMGES--EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLV 273 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~--~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 273 (436)
.++..++........ ......++... ....+|+|||++.... +... ...|...++... .....+
T Consensus 134 ~i~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~-------s~~~---~~~l~~ii~~R~--~~~~pt 199 (248)
T PRK12377 134 VVTVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRE-------TKNE---QVVLNQIIDRRT--ASMRSV 199 (248)
T ss_pred EEEHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCC-------CHHH---HHHHHHHHHHHH--hcCCCE
Confidence 888877765432110 00112233333 2446999999976421 1122 233444444321 122346
Q ss_pred EeccCCCC-----cccHHHHhhc
Q 042771 274 LAATNTPY-----ALDQAIRRRF 291 (436)
Q Consensus 274 i~ttn~~~-----~l~~~l~~Rf 291 (436)
|.|||... .+...+.+|+
T Consensus 200 iitSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 200 GMLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred EEEcCCCHHHHHHHhhHHHHHHH
Confidence 77888652 3455666665
No 230
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.11 E-value=9.7e-10 Score=106.95 Aligned_cols=199 Identities=23% Similarity=0.311 Sum_probs=132.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS 204 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~ 204 (436)
+...+..|+|...+...+.+.+..- .....+|||.|.+||||-.+|++|-+.. +.+|+.+||..+..
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~V----------A~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVV----------AKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHH----------hcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 3567889999999998888877542 1233679999999999999999998876 57999999998754
Q ss_pred hhhc-hHHHHHHHHHHHHHhc--------CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh-----cCCCCC--
Q 042771 205 KWMG-ESEKLVSSLFQMARES--------APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ-----GVGHND-- 268 (436)
Q Consensus 205 ~~~g-~~~~~~~~~~~~a~~~--------~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~-----~~~~~~-- 268 (436)
.... +.-...+..|.-|... ..+.||+|||..|. -.++..||..+. .+....
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP------------L~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP------------LALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC------------HHHHHHHHHHHhhcceeecCCCcee
Confidence 3221 1111122333333221 45699999999873 223444554443 222221
Q ss_pred -CceEEEeccCCCCcccHHHHh---------hccceEEcCCCCHHHHHH----HHHHH-------hCCCCCCCChhhHHH
Q 042771 269 -QKVLVLAATNTPYALDQAIRR---------RFDKRIYIPLPDLKARQH----MFKVH-------LGDTPHNLTESDFES 327 (436)
Q Consensus 269 -~~v~vi~ttn~~~~l~~~l~~---------Rf~~~i~~~~p~~~~r~~----il~~~-------l~~~~~~~~~~~~~~ 327 (436)
-.|.||++||. +|...++. |+ .++-+..|...+|.. +..++ +......++.+.++.
T Consensus 356 kVDVRiIAATNR--DL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~ 432 (550)
T COG3604 356 KVDVRVIAATNR--DLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALEL 432 (550)
T ss_pred EEEEEEEeccch--hHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHH
Confidence 15889999997 44444443 44 244445566655532 11222 223356788999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 328 LARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 328 la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
|.++.+.-+.++|+.+++.|++-+
T Consensus 433 L~~y~wPGNVRELen~veRavlla 456 (550)
T COG3604 433 LSSYEWPGNVRELENVVERAVLLA 456 (550)
T ss_pred HHcCCCCCcHHHHHHHHHHHHHHh
Confidence 999998889999999999999866
No 231
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.10 E-value=1.5e-09 Score=94.22 Aligned_cols=121 Identities=24% Similarity=0.377 Sum_probs=72.4
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh-----
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----- 206 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----- 206 (436)
|+|.....+.+.+.+.... ..+.+|||+|++||||+.+|++|.+.. +.+|+.++|..+....
T Consensus 1 liG~s~~m~~~~~~~~~~a----------~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----------SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----------TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHh----------CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 4566666666655553322 222679999999999999999999875 4799999998774321
Q ss_pred hchHH-------HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----C---CCCce
Q 042771 207 MGESE-------KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-----H---NDQKV 271 (436)
Q Consensus 207 ~g~~~-------~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~---~~~~v 271 (436)
.|... .....++..| ..++||||||+.| ...++..|+..++.-. . ...++
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A---~~GtL~Ld~I~~L------------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQA---NGGTLFLDEIEDL------------PPELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHT---TTSEEEEETGGGS-------------HHHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeec---cceEEeecchhhh------------HHHHHHHHHHHHhhchhccccccccccccc
Confidence 11100 0011334444 3459999999998 3445666777776321 1 12268
Q ss_pred EEEeccCCC
Q 042771 272 LVLAATNTP 280 (436)
Q Consensus 272 ~vi~ttn~~ 280 (436)
.||++|+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 899999864
No 232
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.10 E-value=5.7e-11 Score=114.73 Aligned_cols=247 Identities=20% Similarity=0.233 Sum_probs=129.1
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEec----cch-------
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISS----SDL------- 202 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~----~~l------- 202 (436)
.|.|++.+|..+.-.+.........-....+..-++||.|.||||||.|.+.+++.....++.... ..+
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~~~~d 104 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTASVSRD 104 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEEECCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccceeccc
Confidence 388999999887654433222110000112344689999999999999999887665444432211 111
Q ss_pred --hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC----C------CCCc
Q 042771 203 --VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG----H------NDQK 270 (436)
Q Consensus 203 --~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~----~------~~~~ 270 (436)
.+.|.-+... +- ....+|++|||+|.+-. .....|...|+.-. . -+.+
T Consensus 105 ~~~~~~~leaGa-----lv---lad~GiccIDe~dk~~~------------~~~~~l~eaMEqq~isi~kagi~~~l~ar 164 (331)
T PF00493_consen 105 PVTGEWVLEAGA-----LV---LADGGICCIDEFDKMKE------------DDRDALHEAMEQQTISIAKAGIVTTLNAR 164 (331)
T ss_dssp GGTSSECEEE-H-----HH---HCTTSEEEECTTTT--C------------HHHHHHHHHHHCSCEEECTSSSEEEEE--
T ss_pred cccceeEEeCCc-----hh---cccCceeeecccccccc------------hHHHHHHHHHHcCeeccchhhhcccccch
Confidence 1112111111 11 22446999999998732 22455666666321 1 1235
Q ss_pred eEEEeccCCCC-------------cccHHHHhhccceEEc-CCCCHHHHHHHHHHHhCCCCC--------------CCCh
Q 042771 271 VLVLAATNTPY-------------ALDQAIRRRFDKRIYI-PLPDLKARQHMFKVHLGDTPH--------------NLTE 322 (436)
Q Consensus 271 v~vi~ttn~~~-------------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~~l~~~~~--------------~~~~ 322 (436)
..|++++|+.. .+++.+++|||.++.+ +.|+.+.-..+.++.+..... .++.
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~ 244 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISE 244 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-H
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCH
Confidence 67899998774 5778999999977665 667777777777766653211 2233
Q ss_pred hhHHHHHHHcC-CCCH---HHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCC
Q 042771 323 SDFESLARKTE-GFSG---SDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILP 398 (436)
Q Consensus 323 ~~~~~la~~t~-g~s~---~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (436)
..+......+. .+.+ .+...++...... .+... ..+....|.+++...++-+..++.|+-++..
T Consensus 245 ~~lr~yI~yar~~~~P~ls~ea~~~I~~~Yv~----lR~~~----~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~---- 312 (331)
T PF00493_consen 245 DLLRKYIAYARQNIHPVLSEEAKELIINYYVE----LRKES----KSNNKSIPITIRQLESLIRLSEAHAKLRLRD---- 312 (331)
T ss_dssp CCCHHHHHHHHHHC--EE-HHCHHHHHHHHCC----CCHCH----HCHSS-B-SSCCCCCHHHHHHHHHHHCTTSS----
T ss_pred HHHHHHHHHHHhhcccccCHHHHHHHHHHHHH----hcccc----cccccccccchhhHHHHHHHHHHHHHHhccC----
Confidence 33333222222 1111 2223333332222 11110 0113457789999999999999999987764
Q ss_pred CCcCHHHHHHHHhhC
Q 042771 399 PPISKTDFDKVLARQ 413 (436)
Q Consensus 399 ~~vt~~d~~~al~~~ 413 (436)
.|+.+|+..|+.-+
T Consensus 313 -~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 313 -EVTEEDVEEAIRLF 326 (331)
T ss_dssp -ECSHHHHHHHHHHH
T ss_pred -ceeHHHHHHHHHHH
Confidence 79999999998754
No 233
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.08 E-value=8.4e-09 Score=106.82 Aligned_cols=54 Identities=37% Similarity=0.481 Sum_probs=46.1
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
...|+..|++|+|++++++.|...+... ++++|+||||||||++++++++.+..
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~~--------------~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQR--------------RHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHhC--------------CeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 3567889999999999999998876431 47999999999999999999998753
No 234
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.07 E-value=1.8e-09 Score=99.17 Aligned_cols=148 Identities=24% Similarity=0.284 Sum_probs=83.8
Q ss_pred ccccCCCCcccccc-CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 123 IIREKPNVKWNDVA-GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 123 ~~~~~~~~~~~dl~-G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
+.......+|+++. +.+..+..+..+..+. +-+. ....+++|+|+||||||+|+.++|+++ +..++.++
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~----~~~~---~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYV----EEFD---GNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHH----Hhhc---cCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 33344566888875 3333333333322221 1111 112589999999999999999999987 77888888
Q ss_pred ccchhhhhhchH---HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 199 SSDLVSKWMGES---EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 199 ~~~l~~~~~g~~---~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
..++........ ......++.... ...+|+|||++... .......++..++..-- ..+..+|.
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~-------~s~~~~~~l~~Ii~~Ry-----~~~~~tii 200 (244)
T PRK07952 135 VADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQT-------ESRYEKVIINQIVDRRS-----SSKRPTGM 200 (244)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCC-------CCHHHHHHHHHHHHHHH-----hCCCCEEE
Confidence 888765433211 111223444433 45699999998753 12233334444443211 12345777
Q ss_pred ccCCCC-----cccHHHHhhc
Q 042771 276 ATNTPY-----ALDQAIRRRF 291 (436)
Q Consensus 276 ttn~~~-----~l~~~l~~Rf 291 (436)
|||... .++..+.+|+
T Consensus 201 tSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 201 LTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred eCCCCHHHHHHHhChHHHHHH
Confidence 888652 3445555655
No 235
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=1.7e-09 Score=103.78 Aligned_cols=132 Identities=17% Similarity=0.250 Sum_probs=91.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCC-------------------------ceEEEeccch---hhhh-hchHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADS-------------------------TFFSISSSDL---VSKW-MGESEKLV 214 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~-------------------------~~~~v~~~~l---~~~~-~g~~~~~~ 214 (436)
+.++++||+||+|+|||++|+.+|+.+.+ .|+.+++..- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 45578999999999999999999998643 1333333110 0000 00112345
Q ss_pred HHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhh
Q 042771 215 SSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRR 290 (436)
Q Consensus 215 ~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~R 290 (436)
+.+.+.+.. ....|++||+++.|. ....+.|++.++.. ...+.+|.+|+.+..+.+.+++|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld------------~~a~naLLk~LEep---~~~~~~Ilvth~~~~ll~ti~SR 163 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMN------------LQAANSLLKVLEEP---PPQVVFLLVSHAADKVLPTIKSR 163 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCC------------HHHHHHHHHHHHhC---cCCCEEEEEeCChHhChHHHHHH
Confidence 555555543 345699999999883 34467788888754 23466777888899999999999
Q ss_pred ccceEEcCCCCHHHHHHHHHH
Q 042771 291 FDKRIYIPLPDLKARQHMFKV 311 (436)
Q Consensus 291 f~~~i~~~~p~~~~r~~il~~ 311 (436)
| ..+.|++|+.++....|..
T Consensus 164 c-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 164 C-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred h-hhhcCCCCCHHHHHHHHHh
Confidence 9 5888999999988877754
No 236
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.04 E-value=2.4e-09 Score=106.47 Aligned_cols=272 Identities=16% Similarity=0.136 Sum_probs=145.2
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe----ccchhhhhh
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS----SSDLVSKWM 207 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~----~~~l~~~~~ 207 (436)
|-.|.|++.+|.-|.-.+.........-....+.--+++|+|.||+|||-+.++++..+...++.-. ++.|....+
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 5568999999998877664443322221112334468999999999999999999998876655432 111110000
Q ss_pred chHHHHHHHHHH--HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh--cCC-CCCCceEEEeccCCCC-
Q 042771 208 GESEKLVSSLFQ--MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ--GVG-HNDQKVLVLAATNTPY- 281 (436)
Q Consensus 208 g~~~~~~~~~~~--~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~--~~~-~~~~~v~vi~ttn~~~- 281 (436)
...+. -...++ ...-...+|.+|||||.|.-+ ++.+.-+.+.+.-..+. |+. .-+.+..||+++|+..
T Consensus 424 kD~es-gdf~iEAGALmLADnGICCIDEFDKMd~~-----dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~G 497 (764)
T KOG0480|consen 424 KDEES-GDFTIEAGALMLADNGICCIDEFDKMDVK-----DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGG 497 (764)
T ss_pred ecCCC-CceeeecCcEEEccCceEEechhcccChH-----hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCC
Confidence 00000 000000 001124469999999998422 11122222222111111 110 1133566889998772
Q ss_pred ------------cccHHHHhhccceE-EcCCCCHHHHHHHHHHHhCCCCC---------CCChhhHHHHHHHcCCCCHHH
Q 042771 282 ------------ALDQAIRRRFDKRI-YIPLPDLKARQHMFKVHLGDTPH---------NLTESDFESLARKTEGFSGSD 339 (436)
Q Consensus 282 ------------~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~~~~~---------~~~~~~~~~la~~t~g~s~~d 339 (436)
.+++++++||+..+ .++.|+...-..|-++.+..... .++-+.+......+..|.| -
T Consensus 498 hYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P-~ 576 (764)
T KOG0480|consen 498 HYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP-K 576 (764)
T ss_pred ccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCc-c
Confidence 67899999999654 56789988888888777753211 2222333333332222222 1
Q ss_pred HHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCC
Q 042771 340 ISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTV 417 (436)
Q Consensus 340 l~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~ 417 (436)
|..-..+.+..-+...+.... ...+....+.+-|...++-|..+++|+-+.-+ .||.+|+.+|.+.++-|+
T Consensus 577 ls~ea~~~lve~Y~~lR~~~~--~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~d-----evt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 577 LSKEASEMLVEKYKGLRQRDA--QGNNRSSYRITVRQLESLIRLSEARARVECRD-----EVTKEDVEEAVELLKKSI 647 (764)
T ss_pred ccHHHHHHHHHHHHHHHHhhc--cccCcccccccHHHHHHHHHHHHHHHhhhhhh-----hccHHHHHHHHHHHHhhh
Confidence 111111222222222221100 00011123455566677778888888755533 699999999998887664
No 237
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.2e-08 Score=107.43 Aligned_cols=128 Identities=22% Similarity=0.343 Sum_probs=95.1
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh-------
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS------- 204 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~------- 204 (436)
|+||+++...+.+++..... .+ . ...|...+||.||.|+|||-||+++|..+ .-.++.++++++..
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~--gl-~-~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRA--GL-K-DPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred ccchHHHHHHHHHHHHhhhc--cc-C-CCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCC
Confidence 89999999999999866432 11 1 11466889999999999999999999987 34788999886432
Q ss_pred --hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC--------CCCCCceEEE
Q 042771 205 --KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV--------GHNDQKVLVL 274 (436)
Q Consensus 205 --~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~--------~~~~~~v~vi 274 (436)
.|+|. .....+.+..+....+||+|||||.- ...+++.|+..+|.. ....++++||
T Consensus 640 p~gyvG~--e~gg~LteavrrrP~sVVLfdeIEkA------------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~I 705 (898)
T KOG1051|consen 640 PPGYVGK--EEGGQLTEAVKRRPYSVVLFEEIEKA------------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIFI 705 (898)
T ss_pred Ccccccc--hhHHHHHHHHhcCCceEEEEechhhc------------CHHHHHHHHHHHhcCccccCCCcEeeccceEEE
Confidence 23444 33457888888888999999999973 456677788877733 1234578999
Q ss_pred eccCCC
Q 042771 275 AATNTP 280 (436)
Q Consensus 275 ~ttn~~ 280 (436)
+|+|..
T Consensus 706 MTsn~~ 711 (898)
T KOG1051|consen 706 MTSNVG 711 (898)
T ss_pred Eecccc
Confidence 998653
No 238
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.01 E-value=6.6e-09 Score=105.26 Aligned_cols=192 Identities=21% Similarity=0.264 Sum_probs=125.8
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM 207 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~ 207 (436)
.+.+++|.....+.+...+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4556788776666666554321 1223579999999999999999998775 46899999987643211
Q ss_pred chHHHHHHHHHHH---------------HHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-------
Q 042771 208 GESEKLVSSLFQM---------------ARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG------- 265 (436)
Q Consensus 208 g~~~~~~~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~------- 265 (436)
-..+|.. .....+++||||||+.|. ..++..|+..++...
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~------------~~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP------------LNLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC------------HHHHHHHHHHHhhCeEEeCCCC
Confidence 1112211 111345699999999983 334555666554321
Q ss_pred -CCCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHhC-------CCCCCCChhhHH
Q 042771 266 -HNDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHLG-------DTPHNLTESDFE 326 (436)
Q Consensus 266 -~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l~-------~~~~~~~~~~~~ 326 (436)
....++.+|++|+.. ..+.+.|..|+. .+.+..|...+|.+ ++++++. .....+++..+.
T Consensus 269 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 347 (445)
T TIGR02915 269 EEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIA-EISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALR 347 (445)
T ss_pred ceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhc-cceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 011256788888765 345666777773 45566666666654 4444432 223457899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 327 SLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 327 ~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
.|..+.+..+.++|+++++.|+..+
T Consensus 348 ~L~~~~wpgNvreL~~~i~~a~~~~ 372 (445)
T TIGR02915 348 ALEAHAWPGNVRELENKVKRAVIMA 372 (445)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 9999999889999999999998654
No 239
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=99.00 E-value=1e-08 Score=99.08 Aligned_cols=202 Identities=17% Similarity=0.221 Sum_probs=133.1
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-----CceEEEeccchhhh--
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-----STFFSISSSDLVSK-- 205 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-----~~~~~v~~~~l~~~-- 205 (436)
..++|.+.-...+.+++..++. ...+.++++.|-||||||.+...+-..+. ...++++|..+...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 4588999999999988877654 24457899999999999999997765542 24578888764321
Q ss_pred --------h----hc-hHHHHHHHHHHH-HHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCc
Q 042771 206 --------W----MG-ESEKLVSSLFQM-ARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQK 270 (436)
Q Consensus 206 --------~----~g-~~~~~~~~~~~~-a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 270 (436)
+ .+ .........|.. .... .+-|+++||+|.|..... ..|...++.-..+..+
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------TVLYTLFEWPKLPNSR 289 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc------------ceeeeehhcccCCcce
Confidence 1 00 111111222222 1222 366999999999974432 2233333333345668
Q ss_pred eEEEeccCCCCcccHHHHh---h---ccceEEcCCCCHHHHHHHHHHHhCCCCCC-CChhhHHHHHHHcCCCCHHHHHHH
Q 042771 271 VLVLAATNTPYALDQAIRR---R---FDKRIYIPLPDLKARQHMFKVHLGDTPHN-LTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 271 v~vi~ttn~~~~l~~~l~~---R---f~~~i~~~~p~~~~r~~il~~~l~~~~~~-~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
+++|+.+|..+.-|..|-+ | -+..+.|++++.++..+|+...+...... +-+..+..+|+...|.|| |++.+
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRka 368 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRKA 368 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHHH
Confidence 8999999988765544443 2 34789999999999999999998765543 234578889999998877 77754
Q ss_pred ---HHHHhhhHHHhh
Q 042771 344 ---VKDVLFEPVRKT 355 (436)
Q Consensus 344 ---~~~a~~~a~~~~ 355 (436)
|+.|.-.+-.+.
T Consensus 369 Ldv~R~aiEI~E~e~ 383 (529)
T KOG2227|consen 369 LDVCRRAIEIAEIEK 383 (529)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455554444333
No 240
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.00 E-value=5.9e-09 Score=106.35 Aligned_cols=192 Identities=19% Similarity=0.242 Sum_probs=125.6
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM 207 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~ 207 (436)
.+.+++|.....+.+...+... ......++|.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 4667888777666666555321 1223579999999999999999998876 4699999998874321
Q ss_pred chHHHHHHHHHHHH---------------HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC------
Q 042771 208 GESEKLVSSLFQMA---------------RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH------ 266 (436)
Q Consensus 208 g~~~~~~~~~~~~a---------------~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------ 266 (436)
.-..+|... ....++.|||||++.|. ...+..|+..++....
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMP------------LDVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCC------------HHHHHHHHHHHhcCcEEeCCCC
Confidence 112222211 11234689999999983 2334556665553210
Q ss_pred --CCCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHH----HHHHHHHhCC-------CCCCCChhhHH
Q 042771 267 --NDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKAR----QHMFKVHLGD-------TPHNLTESDFE 326 (436)
Q Consensus 267 --~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r----~~il~~~l~~-------~~~~~~~~~~~ 326 (436)
...++.+|+||+.. ..+.+.|..||. .+.+..|...+| ..++++++.. ....++++.+.
T Consensus 268 ~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~ 346 (469)
T PRK10923 268 APVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEA 346 (469)
T ss_pred CeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHH
Confidence 01246788888654 245678888884 344555554444 3355555431 22347899999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 327 SLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 327 ~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
.|..+.+..+.++|+++++.++..+
T Consensus 347 ~L~~~~wpgNv~eL~~~i~~~~~~~ 371 (469)
T PRK10923 347 ALTRLAWPGNVRQLENTCRWLTVMA 371 (469)
T ss_pred HHHhCCCCChHHHHHHHHHHHHHhC
Confidence 9999999999999999999988654
No 241
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=2.6e-09 Score=97.99 Aligned_cols=184 Identities=20% Similarity=0.277 Sum_probs=98.5
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---ceEEEec-cchh----hhh
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---TFFSISS-SDLV----SKW 206 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~~-~~l~----~~~ 206 (436)
++|.+.-.+.|.+++.. .+...++|+||+|+|||+|++.+.+.+.. ..+++.. .... ...
T Consensus 1 F~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 68 (234)
T PF01637_consen 1 FFGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSF 68 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHH
Confidence 35666666777765532 23468999999999999999999998832 1112211 0000 000
Q ss_pred ------------------------------hchHHHHHHHHHHHHHhc-CCeEEEEccccccc-cCCCCCCCchHHHHHH
Q 042771 207 ------------------------------MGESEKLVSSLFQMARES-APSIIFIDEIDSLC-GQRGEGNESEASRRIK 254 (436)
Q Consensus 207 ------------------------------~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~-~~~~~~~~~~~~~~~~ 254 (436)
.......+..++...... ...||+|||++.+. ... ......
T Consensus 69 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~-------~~~~~~ 141 (234)
T PF01637_consen 69 IEETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE-------EDKDFL 141 (234)
T ss_dssp HHHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT-------TTHHHH
T ss_pred HHHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc-------chHHHH
Confidence 011233445555555443 34799999999996 211 123444
Q ss_pred HHHHHHhhcCCCCCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCC--ChhhHHH
Q 042771 255 TELLVQMQGVGHNDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNL--TESDFES 327 (436)
Q Consensus 255 ~~ll~~l~~~~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~--~~~~~~~ 327 (436)
..|...++.........+|++++.... .-...+..|+.. +.+++.+.++..+++...+... ..+ ++.+++.
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~ 219 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEE 219 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHH
Confidence 555555554323333334444443211 112234557765 9999999999999999987666 544 8999999
Q ss_pred HHHHcCCCCHHHH
Q 042771 328 LARKTEGFSGSDI 340 (436)
Q Consensus 328 la~~t~g~s~~dl 340 (436)
+...+.|. |+-|
T Consensus 220 i~~~~gG~-P~~l 231 (234)
T PF01637_consen 220 IYSLTGGN-PRYL 231 (234)
T ss_dssp HHHHHTT--HHHH
T ss_pred HHHHhCCC-HHHH
Confidence 99999885 4444
No 242
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=6.9e-09 Score=96.96 Aligned_cols=137 Identities=20% Similarity=0.195 Sum_probs=91.3
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc----------------eEEEeccchhhhhhchHHHHHHHHHHHH----Hh
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST----------------FFSISSSDLVSKWMGESEKLVSSLFQMA----RE 223 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~ 223 (436)
+.++.+||+||+|+||+.+|.++|+.+-+. ++.+.+.. .+.. -.-..++.+...+ ..
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 445789999999999999999999987442 12221110 0000 0122334443333 23
Q ss_pred cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHH
Q 042771 224 SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 224 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
+...|++||++|.|. ....+.||+.++ +++.++++|..|+.+..+.|.++|||. .+.|+++..
T Consensus 94 ~~~kv~ii~~ad~mt------------~~AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRcq-~~~~~~~~~- 156 (290)
T PRK05917 94 SPYKIYIIHEADRMT------------LDAISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRSL-SIHIPMEEK- 156 (290)
T ss_pred CCceEEEEechhhcC------------HHHHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcce-EEEccchhc-
Confidence 345699999999983 445788999998 467788999999999999999999995 677765421
Q ss_pred HHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 304 ARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 304 ~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
..++++....++..+.|
T Consensus 157 --------------~~i~~~~~~~l~~~~~g 173 (290)
T PRK05917 157 --------------TLVSKEDIAYLIGYAQG 173 (290)
T ss_pred --------------cCCCHHHHHHHHHHhCC
Confidence 12355556666666555
No 243
>PRK08181 transposase; Validated
Probab=98.99 E-value=3.6e-09 Score=98.56 Aligned_cols=124 Identities=23% Similarity=0.329 Sum_probs=73.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch-HHHHHHHHHHHHHhcCCeEEEEccccccccCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE-SEKLVSSLFQMARESAPSIIFIDEIDSLCGQRG 242 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~ 242 (436)
.+++|+||||||||+|+.++++++ |..+++++..++....... .......++.... .+.+|+|||++.+...
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~--~~dLLIIDDlg~~~~~-- 182 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLD--KFDLLILDDLAYVTKD-- 182 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHh--cCCEEEEeccccccCC--
Confidence 579999999999999999999865 7788888888876644211 1111223333333 4469999999876422
Q ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC----------cccHHHHhhcc---ceEEcCCCCHHHH
Q 042771 243 EGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY----------ALDQAIRRRFD---KRIYIPLPDLKAR 305 (436)
Q Consensus 243 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~----------~l~~~l~~Rf~---~~i~~~~p~~~~r 305 (436)
.... ..|+..++..... -.+|.|||.+. .+..++++|+- ..+.+.-.+...+
T Consensus 183 -----~~~~---~~Lf~lin~R~~~---~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~ 247 (269)
T PRK08181 183 -----QAET---SVLFELISARYER---RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRR 247 (269)
T ss_pred -----HHHH---HHHHHHHHHHHhC---CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhH
Confidence 1222 2333333322111 24677787761 13356667652 3455555554433
No 244
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.96 E-value=1.8e-08 Score=103.68 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=93.4
Q ss_pred cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEeccchhhhhhchH--HHH
Q 042771 138 LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSSDLVSKWMGES--EKL 213 (436)
Q Consensus 138 ~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~~l~~~~~g~~--~~~ 213 (436)
++++|..|.-..+.|- ...|++|.|++|||||+++++++.-+.. +|+.+..+.-....+|.. +..
T Consensus 8 ~~~~~~Al~l~av~p~-----------~~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPA-----------GLGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCcc-----------ccceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 5667777665544331 1268999999999999999999999854 787766544333333331 111
Q ss_pred HHH---HHH--HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC---------CC-CCCceEEEeccC
Q 042771 214 VSS---LFQ--MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV---------GH-NDQKVLVLAATN 278 (436)
Q Consensus 214 ~~~---~~~--~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~---------~~-~~~~v~vi~ttn 278 (436)
+.. .++ .......+||||||+..+ ...+++.|+.-|+.- +. -..++++|++.|
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~ 144 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERL------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE 144 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccC------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC
Confidence 100 000 001113369999999987 455677788777632 11 123577788744
Q ss_pred CC---CcccHHHHhhccceEEcCCCCHHHH
Q 042771 279 TP---YALDQAIRRRFDKRIYIPLPDLKAR 305 (436)
Q Consensus 279 ~~---~~l~~~l~~Rf~~~i~~~~p~~~~r 305 (436)
.. ..|+++++.||+..+.++.|+..+.
T Consensus 145 ~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 145 GAEEDERAPAALADRLAFHLDLDGLALRDA 174 (584)
T ss_pred ChhcccCCCHHhHhheEEEEEcCCCChHHh
Confidence 32 4689999999999999998886653
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.93 E-value=9.5e-09 Score=98.63 Aligned_cols=111 Identities=21% Similarity=0.352 Sum_probs=67.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch---HHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE---SEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~---~~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 240 (436)
.+++|+||+|||||+|+.++|+++ +..+++++..++....... ........+.... ...+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~--~~DLLIIDDlG~e~-- 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLI--NCDLLIIDDLGTEK-- 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhc--cCCEEEEeccCCCC--
Confidence 689999999999999999999986 7788899988876543211 0011111133333 33699999998653
Q ss_pred CCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-Cc----ccHHHHhhc
Q 042771 241 RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-YA----LDQAIRRRF 291 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~~Rf 291 (436)
...... ..|...++..... + ..+|.|||.+ .. +++.+.+|+
T Consensus 260 -----~t~~~~---~~Lf~iin~R~~~-~-k~tIiTSNl~~~el~~~~~eri~SRL 305 (329)
T PRK06835 260 -----ITEFSK---SELFNLINKRLLR-Q-KKMIISTNLSLEELLKTYSERISSRL 305 (329)
T ss_pred -----CCHHHH---HHHHHHHHHHHHC-C-CCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 122222 3333333322111 1 2366677654 22 456777775
No 246
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.91 E-value=3.4e-08 Score=100.46 Aligned_cols=166 Identities=20% Similarity=0.277 Sum_probs=110.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHHHHHHHHH---------------HHhcCCeE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKLVSSLFQM---------------ARESAPSI 228 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~---------------a~~~~p~i 228 (436)
.+++++|++||||+++|+++.... +.+|+.++|..+.... .-..+|.. ......++
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~------~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 240 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESL------LESELFGHEKGAFTGAQTLRQGLFERANEGT 240 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHH------HHHHhcCCCCCCCCCCCCCCCCceEECCCCE
Confidence 579999999999999999998764 5799999998764321 11112211 11123469
Q ss_pred EEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----C---CCCceEEEeccCCC-------CcccHHHHhhccc
Q 042771 229 IFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-----H---NDQKVLVLAATNTP-------YALDQAIRRRFDK 293 (436)
Q Consensus 229 l~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~---~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~ 293 (436)
||||||+.|. ..+...|+..++... . ...++.+|++|+.. ..+.+.+..|+.
T Consensus 241 l~ld~i~~l~------------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~- 307 (457)
T PRK11361 241 LLLDEIGEMP------------LVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN- 307 (457)
T ss_pred EEEechhhCC------------HHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 9999999983 233555666554321 0 11247788888764 245566666773
Q ss_pred eEEcCCCCHHHHHH----HHHHHhC-------CCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 294 RIYIPLPDLKARQH----MFKVHLG-------DTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 294 ~i~~~~p~~~~r~~----il~~~l~-------~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
.+.+..|...+|.. ++.+++. .....++++.+..|..+.+..+.++|+.+++.++..+
T Consensus 308 ~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~ 376 (457)
T PRK11361 308 VIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMN 376 (457)
T ss_pred cceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhC
Confidence 45666677666543 3333332 1224578999999999999999999999999988643
No 247
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.91 E-value=8.1e-08 Score=94.55 Aligned_cols=214 Identities=14% Similarity=0.160 Sum_probs=121.3
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
-...|..++.+.+.++|.=+..-...+++++.. + ..+. ...+.+-+||+||+||||||.++.+++++|..++.-+
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~-~---~~~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQ-V---AEFT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHH-H---HHhc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345678888999999998877777777776651 0 1111 2233467999999999999999999999999887754
Q ss_pred -c------cch------hhhhhchHHHHHHHHHHHHH------------hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 199 -S------SDL------VSKWMGESEKLVSSLFQMAR------------ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 199 -~------~~l------~~~~~g~~~~~~~~~~~~a~------------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
+ ..+ .......--.........+. ...+.+|+|||+-..+... ..+.
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d--------~~~~ 214 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD--------DSET 214 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh--------hHHH
Confidence 1 111 11001110011111111221 1246699999997765321 2222
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHh--------hccceEEcCCCCHHHHHHHHHHHhCCCCCCCC----
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--------RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLT---- 321 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~--------Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~---- 321 (436)
+...|..+-.... .+-|++|.-++.++..+...+. |. ..|.|.+-...-.++.|...+.......+
T Consensus 215 f~evL~~y~s~g~-~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 215 FREVLRLYVSIGR-CPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHhcCC-CcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 3333333322211 2222233223333433332221 55 46677776667777777766654433333
Q ss_pred --hhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 322 --ESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 322 --~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
...++.++..+.| ||+.+++...+.+
T Consensus 293 ~~~~~v~~i~~~s~G----DIRsAInsLQlss 320 (634)
T KOG1970|consen 293 PDTAEVELICQGSGG----DIRSAINSLQLSS 320 (634)
T ss_pred chhHHHHHHHHhcCc----cHHHHHhHhhhhc
Confidence 4566677777666 9999998888775
No 248
>PF13173 AAA_14: AAA domain
Probab=98.86 E-value=8.7e-09 Score=85.58 Aligned_cols=118 Identities=20% Similarity=0.302 Sum_probs=69.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC--CceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD--STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG 244 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~--~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~ 244 (436)
+.++|+||+||||||+++.+++.+. .+++++++.+.......... +...+.......+.+|||||++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~~------ 74 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYLP------ 74 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhhc------
Confidence 4689999999999999999999876 78888888776442111111 2222222222256799999999862
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc----cHHHHhhccceEEcCCCCHHH
Q 042771 245 NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL----DQAIRRRFDKRIYIPLPDLKA 304 (436)
Q Consensus 245 ~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l----~~~l~~Rf~~~i~~~~p~~~~ 304 (436)
.+...+..+. + ...++.||+|+.....+ ...+..|+ ..+.+.+.+..|
T Consensus 75 ----~~~~~lk~l~---d----~~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E 126 (128)
T PF13173_consen 75 ----DWEDALKFLV---D----NGPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFRE 126 (128)
T ss_pred ----cHHHHHHHHH---H----hccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHH
Confidence 1222223332 2 12234455555443333 33344466 367777777655
No 249
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.84 E-value=1.6e-07 Score=88.10 Aligned_cols=170 Identities=16% Similarity=0.125 Sum_probs=104.4
Q ss_pred cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE----------------Eeccc
Q 042771 138 LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS----------------ISSSD 201 (436)
Q Consensus 138 ~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~----------------v~~~~ 201 (436)
+..+++.|...+.. .+.++.+||+|| +||+++|+.+|+.+-+.--. -+..+
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 45566666665543 244578999996 68999999999876332100 00111
Q ss_pred hhhhh-hc--hHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEE
Q 042771 202 LVSKW-MG--ESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVL 274 (436)
Q Consensus 202 l~~~~-~g--~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 274 (436)
+..-. .| -.-..++.+...+. .+...|++||++|.|. ....+.||+.++ +++.++++|
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~------------~~AaNaLLKtLE---EPp~~t~~i 138 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH------------VNAANSLLKVIE---EPQSEIYIF 138 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC------------HHHHHHHHHHhc---CCCCCeEEE
Confidence 10000 01 11233444444332 2345699999999983 344788999998 456678899
Q ss_pred eccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 042771 275 AATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVK 345 (436)
Q Consensus 275 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 345 (436)
.+|+.+..+-|.++||| ..+.|+. +.+...+++.. .+ ++......++..+ | +++....+..
T Consensus 139 L~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~----~g--~~~~~a~~la~~~-~-s~~~A~~l~~ 199 (290)
T PRK07276 139 LLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQ----KG--LLKTQAELLAKLA-Q-STSEAEKLAQ 199 (290)
T ss_pred EEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHH----cC--CChHHHHHHHHHC-C-CHHHHHHHhC
Confidence 99999999999999999 5788866 55555555542 22 2333344455444 4 5655555553
No 250
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.83 E-value=8.9e-08 Score=97.56 Aligned_cols=193 Identities=19% Similarity=0.211 Sum_probs=123.3
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhc
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMG 208 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g 208 (436)
+..++|.....+.+...+... ......+++.|.+||||+++|+++.... +.+|+.++|..+...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~----------a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRL----------SRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 345777776666655544321 1222579999999999999999998774 56899999987643221
Q ss_pred hHHHHHHHHHHH---------------HHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------
Q 042771 209 ESEKLVSSLFQM---------------ARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-------- 265 (436)
Q Consensus 209 ~~~~~~~~~~~~---------------a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------- 265 (436)
-..+|.. .....++.||||||+.|. ..+...|+..++...
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~------------~~~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMP------------LDAQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCC------------HHHHHHHHHHHhcCcEEECCCCc
Confidence 1111110 112235799999999983 223455555554221
Q ss_pred CCCCceEEEeccCCC-------CcccHHHHhhcc-ceEEcCCCC--HHHHHHHHHHHhCC-------CCCCCChhhHHHH
Q 042771 266 HNDQKVLVLAATNTP-------YALDQAIRRRFD-KRIYIPLPD--LKARQHMFKVHLGD-------TPHNLTESDFESL 328 (436)
Q Consensus 266 ~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~-~~i~~~~p~--~~~r~~il~~~l~~-------~~~~~~~~~~~~l 328 (436)
....++.+|++|+.. ..+.+.+..|+. ..|.+|+.. .++...++++++.. ....++++.+..|
T Consensus 265 ~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 344 (463)
T TIGR01818 265 PIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERL 344 (463)
T ss_pred eeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHH
Confidence 011246778887654 245567777774 355555544 34555555555431 1235789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 329 ARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
..+.+.-+.++|+.+++.++..+-
T Consensus 345 ~~~~wpgNvreL~~~~~~~~~~~~ 368 (463)
T TIGR01818 345 KQLRWPGNVRQLENLCRWLTVMAS 368 (463)
T ss_pred HhCCCCChHHHHHHHHHHHHHhCC
Confidence 999988899999999999987553
No 251
>PRK15115 response regulator GlrR; Provisional
Probab=98.83 E-value=1e-07 Score=96.54 Aligned_cols=165 Identities=20% Similarity=0.302 Sum_probs=109.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHHHHHHHHHH---------------HhcCCeE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKLVSSLFQMA---------------RESAPSI 228 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a---------------~~~~p~i 228 (436)
..++|+|++|||||++|+++.+.. +.+|+.++|..+..... -..+|... .....++
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 231 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL------ESELFGHARGAFTGAVSNREGLFQAAEGGT 231 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH------HHHhcCCCcCCCCCCccCCCCcEEECCCCE
Confidence 469999999999999999998875 47999999987643211 11222211 1123469
Q ss_pred EEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCCceEEEeccCCC-------CcccHHHHhhccc
Q 042771 229 IFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQKVLVLAATNTP-------YALDQAIRRRFDK 293 (436)
Q Consensus 229 l~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~ 293 (436)
|||||||.|. ...+..|+..++.... ...++.+|++|+.. ..+.+.+..|+.
T Consensus 232 l~l~~i~~l~------------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~- 298 (444)
T PRK15115 232 LFLDEIGDMP------------APLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLN- 298 (444)
T ss_pred EEEEccccCC------------HHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhc-
Confidence 9999999983 2334556655543210 11256788888753 133444555553
Q ss_pred eEEcCCCCHHHHHH----HHHHHhCC-------CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 294 RIYIPLPDLKARQH----MFKVHLGD-------TPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 294 ~i~~~~p~~~~r~~----il~~~l~~-------~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
.+.+..|...+|.+ ++++++.. ....++++.+..|..+.+..+.++|+++++.++..
T Consensus 299 ~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 299 VVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred eeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 55666777777643 33444421 22347899999999999888999999999998764
No 252
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.82 E-value=3.6e-09 Score=92.84 Aligned_cols=70 Identities=30% Similarity=0.519 Sum_probs=46.7
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchH-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGES-EKLVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
..+++|+||||||||+||.++++++ |.++..++..++........ .......+..... ..+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~--~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKR--VDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHT--SSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCcccc--ccEeccccccee
Confidence 4689999999999999999999875 78889999888765432110 1112233344333 359999999753
No 253
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=1.2e-07 Score=86.84 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=80.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc--------------chhhhhh---chHHHHHHHHHHHHH----
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS--------------DLVSKWM---GESEKLVSSLFQMAR---- 222 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~--------------~l~~~~~---g~~~~~~~~~~~~a~---- 222 (436)
.+++.+||+||+|+||..+|.++|+.+-+.--.-.|. ++.--+. .-....++.+.....
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4568999999999999999999998863321000011 1100000 011122333333221
Q ss_pred h-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCC
Q 042771 223 E-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 223 ~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p 300 (436)
. +...|++|+++|.| .....+.||+.++ +++.++++|.+|+.+..+.+.++|||. .+.++.+
T Consensus 85 e~~~~KV~II~~ae~m------------~~~AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq-~~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGIEKL------------NKQSANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCV-QYVVLSK 147 (261)
T ss_pred hcCCCEEEEeccHhhh------------CHHHHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhhee-eeecCCh
Confidence 1 23579999999998 3445788999998 467789999999999999999999995 5667666
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.80 E-value=2.6e-08 Score=94.87 Aligned_cols=71 Identities=21% Similarity=0.380 Sum_probs=50.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchH-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGES-EKLVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
...+++|+||+|||||+|+.++|+++ |.++..++.+++........ ...+...+.... ...+|+|||+...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhc--CCCEEEEecCCCc
Confidence 34799999999999999999999997 77888888877655432111 111233334333 3469999999754
No 255
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.78 E-value=1.3e-07 Score=92.09 Aligned_cols=266 Identities=17% Similarity=0.194 Sum_probs=146.6
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe----ccchhhhhhc
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS----SSDLVSKWMG 208 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~----~~~l~~~~~g 208 (436)
.|.|++++|+++..++...-+ ..+-.+ ..+.--++||.|.|||.||-|.+.+-+-...-++.-. +..|......
T Consensus 332 SIfG~~DiKkAiaClLFgGsr-K~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~R 410 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSR-KRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVIR 410 (729)
T ss_pred hhcCchhHHHHHHHHhhcCcc-ccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEEe
Confidence 488999999999886643221 111111 1223357999999999999999999876554444321 1111100000
Q ss_pred hHHHHHHHHHH---HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh--cCC-CCCCceEEEeccCCCC-
Q 042771 209 ESEKLVSSLFQ---MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ--GVG-HNDQKVLVLAATNTPY- 281 (436)
Q Consensus 209 ~~~~~~~~~~~---~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~--~~~-~~~~~v~vi~ttn~~~- 281 (436)
.+. -+..+- ...-...+|++|||+|.+-... .-+.-+.+.+.-..+. |+. .-+.+..|++++|++.
T Consensus 411 D~~--tReFylEGGAMVLADgGVvCIDEFDKMre~D-----RVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 411 DPS--TREFYLEGGAMVLADGGVVCIDEFDKMREDD-----RVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred cCC--cceEEEecceEEEecCCEEEeehhhccCchh-----hhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccc
Confidence 000 000000 0001145699999999984321 1122222322222221 221 1245677999999882
Q ss_pred ------------cccHHHHhhccceEEcCCCCHHHHHHHHH-----HHhCCCC----------CCCChhhHHHHHHHc--
Q 042771 282 ------------ALDQAIRRRFDKRIYIPLPDLKARQHMFK-----VHLGDTP----------HNLTESDFESLARKT-- 332 (436)
Q Consensus 282 ------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~-----~~l~~~~----------~~~~~~~~~~la~~t-- 332 (436)
++-+.+++||+.++.+..-..+++-..+. .+..... ..++..-++....++
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~ 563 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRL 563 (729)
T ss_pred cccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHh
Confidence 33489999999888887655444433332 2332111 111222344433332
Q ss_pred ---CCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHH
Q 042771 333 ---EGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKV 409 (436)
Q Consensus 333 ---~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~a 409 (436)
...+...-+.|.+.....+-.-.+. ..........|.+-+...++-+..+.++.-+++ +..|..|+++|
T Consensus 564 kc~PrLs~~AaekL~~~yV~~R~~~~q~---e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls-----~~ate~hV~EA 635 (729)
T KOG0481|consen 564 KCGPRLSAEAAEKLSSRYVTMRKGVRQH---EQDSDKRSSIPITVRQLEAIIRIAESLAKMELS-----PFATEAHVEEA 635 (729)
T ss_pred ccCCCCCHHHHHHHHHHHhHHHHHHHHh---hhcccccCCCceeHHHHHHHHHHHHHHHhhcCC-----ccccHHHHHHH
Confidence 3356666666666555432211111 111223345778888889999999999987775 57999999999
Q ss_pred HhhCCC
Q 042771 410 LARQRP 415 (436)
Q Consensus 410 l~~~~p 415 (436)
++.++-
T Consensus 636 ~RLF~v 641 (729)
T KOG0481|consen 636 LRLFQV 641 (729)
T ss_pred HHHHhH
Confidence 998763
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.78 E-value=5.4e-08 Score=90.32 Aligned_cols=71 Identities=30% Similarity=0.472 Sum_probs=51.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHH--HHHHHHHHHHhcCCeEEEEcccccc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEK--LVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~--~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
...+++|+||||||||+||-|+++++ |.+++.++.++++......... .-..+..... ...+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~--~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELK--KVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhh--cCCEEEEecccCc
Confidence 34789999999999999999999986 7889999998887654332211 1112222222 3359999999875
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.77 E-value=2.8e-08 Score=83.69 Aligned_cols=104 Identities=25% Similarity=0.419 Sum_probs=65.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC---CceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 243 (436)
.+|+|+|++||||+++|+++....+ .+|+.++|..+. ..+++.+ .++.|||+|+|.|.
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~~a---~~gtL~l~~i~~L~----- 82 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLEQA---KGGTLYLKNIDRLS----- 82 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHHHC---TTSEEEEECGCCS------
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHHHc---CCCEEEECChHHCC-----
Confidence 5799999999999999999998764 356666666543 2233333 55699999999983
Q ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-------CcccHHHHhhcc-ceEEcC
Q 042771 244 GNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-------YALDQAIRRRFD-KRIYIP 298 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~-~~i~~~ 298 (436)
...+..|+..++... ..++.+|+++..+ ..+++.|..||. ..|.+|
T Consensus 83 -------~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP 136 (138)
T PF14532_consen 83 -------PEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP 136 (138)
T ss_dssp -------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred -------HHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence 334555555555432 3344566555443 246778888875 344444
No 258
>PRK06526 transposase; Provisional
Probab=98.74 E-value=2.1e-08 Score=92.94 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=47.1
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch-HHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE-SEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
..+++|+||||||||+|+.+++.++ |..++.+++.++....... ....+...+... ..+.+|+|||++.+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l--~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKL--GRYPLLIVDEVGYIP 172 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHh--ccCCEEEEcccccCC
Confidence 3689999999999999999998875 6667677776665433211 011112222222 245799999999763
No 259
>PRK06921 hypothetical protein; Provisional
Probab=98.73 E-value=8.3e-08 Score=89.76 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=45.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
..+++|+||||+|||+|+.++|+++ +..+++++..++........ ......+... ....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~~--~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNRM--KKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHHh--cCCCEEEEecccc
Confidence 4689999999999999999999986 56778888766544321111 1112222222 2346999999954
No 260
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=6.1e-07 Score=85.00 Aligned_cols=143 Identities=13% Similarity=0.030 Sum_probs=96.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCC-------------ceEEEeccchhhhhhchHHHHHHHHHHHHH-----hcCC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADS-------------TFFSISSSDLVSKWMGESEKLVSSLFQMAR-----ESAP 226 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~-------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~-----~~~p 226 (436)
..+..||+|+.|+||+.+++.+++.+-+ .++.++.. +.. -.-..++.+.+... .+..
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~ 91 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQK 91 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCc
Confidence 3367889999999999999999998732 12222210 000 11123444444332 1355
Q ss_pred eEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHH
Q 042771 227 SIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQ 306 (436)
Q Consensus 227 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~ 306 (436)
.|++||++|.+. ....+.|++.++. ++..+++|.+|+.+..+-+++++|| ..+.|.+++.++..
T Consensus 92 KvvII~~~e~m~------------~~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 92 KILIIKNIEKTS------------NSLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred eEEEEecccccC------------HHHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 699999999872 3346789999884 5667777777778899999999999 58999999988888
Q ss_pred HHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 307 HMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 307 ~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
..+... . +++.....++..+.|
T Consensus 156 ~~l~~~----~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 156 AKLLSK----N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred HHHHHc----C--CChhHHHHHHHHcCC
Confidence 777643 1 345555556666654
No 261
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.69 E-value=1.7e-07 Score=85.53 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=76.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 246 (436)
.+-.++||+|||||.+++.+|+.+|.+++.++|++..+ ...+.+++.-+... .+.+++||++.| +
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~-GaW~cfdefnrl--------~ 97 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQS-GAWLCFDEFNRL--------S 97 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHH-T-EEEEETCCCS--------S
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhc-Cchhhhhhhhhh--------h
Confidence 45678999999999999999999999999999988653 35566777655544 379999999998 3
Q ss_pred chHHHHHHHHH---HHHhhcCCC----------CCCceEEEeccCCC----CcccHHHHhhccceEEcCCCCHHHHHHHH
Q 042771 247 SEASRRIKTEL---LVQMQGVGH----------NDQKVLVLAATNTP----YALDQAIRRRFDKRIYIPLPDLKARQHMF 309 (436)
Q Consensus 247 ~~~~~~~~~~l---l~~l~~~~~----------~~~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 309 (436)
.+...-+...+ ...+..... -.+.+-++.|.|+. ..+++.++.-| +.+.+..||.....+++
T Consensus 98 ~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 98 EEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 33333332222 222221100 11234456666644 47888888888 68888899987766655
Q ss_pred H
Q 042771 310 K 310 (436)
Q Consensus 310 ~ 310 (436)
-
T Consensus 177 L 177 (231)
T PF12774_consen 177 L 177 (231)
T ss_dssp H
T ss_pred H
Confidence 3
No 262
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.69 E-value=7.7e-08 Score=102.21 Aligned_cols=212 Identities=17% Similarity=0.161 Sum_probs=144.6
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCC-ChhhhcCCCCCC--c-ceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVK-FPQFFTGKRQPW--R-AFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~-~~~~~~~~~~~~--~-~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..+..++.+.+..++.|.......+..++...-. .+..|....... . .++++||||+|||+.+..+|.+++..++.
T Consensus 308 ~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E 387 (871)
T KOG1968|consen 308 AGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVE 387 (871)
T ss_pred cccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceee
Confidence 4566777888888898888777777776654311 112222221111 2 46999999999999999999999999999
Q ss_pred Eeccchhhhhhch-------HHHHHHHHH---HHH--HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 197 ISSSDLVSKWMGE-------SEKLVSSLF---QMA--RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 197 v~~~~l~~~~~g~-------~~~~~~~~~---~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
.|+++..++.... ....+...+ ... ....-.||++||+|-++.. .+..+..+...+.
T Consensus 388 ~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~---------dRg~v~~l~~l~~-- 456 (871)
T KOG1968|consen 388 KNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE---------DRGGVSKLSSLCK-- 456 (871)
T ss_pred cCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch---------hhhhHHHHHHHHH--
Confidence 9998877653211 111122222 000 0111239999999988652 2223444444443
Q ss_pred CCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 042771 265 GHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCV 344 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~ 344 (436)
.....+|+++|.........+.|....++|+.|+.+.+..-+...+....+.+++..++.+.+.+.| ||+..+
T Consensus 457 ---ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~----DiR~~i 529 (871)
T KOG1968|consen 457 ---KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGG----DIRQII 529 (871)
T ss_pred ---hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhccc----CHHHHH
Confidence 1234588888887766665566655789999999999999999988888888899999999999866 998888
Q ss_pred HHHhhh
Q 042771 345 KDVLFE 350 (436)
Q Consensus 345 ~~a~~~ 350 (436)
....+.
T Consensus 530 ~~lq~~ 535 (871)
T KOG1968|consen 530 MQLQFW 535 (871)
T ss_pred HHHhhh
Confidence 776655
No 263
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.68 E-value=4.2e-07 Score=91.97 Aligned_cols=165 Identities=21% Similarity=0.294 Sum_probs=106.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHHHHHHHHH---------------HHhcCCeE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKLVSSLFQM---------------ARESAPSI 228 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~---------------a~~~~p~i 228 (436)
..++++|.+||||+++|+++.... +.+|+.++|..+..... -..+|.. .....+++
T Consensus 163 ~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gt 236 (441)
T PRK10365 163 ATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL------ESELFGHEKGAFTGADKRREGRFVEADGGT 236 (441)
T ss_pred CeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH------HHHhcCCCCCCcCCCCcCCCCceeECCCCE
Confidence 679999999999999999998764 47899999987643211 1112211 11224679
Q ss_pred EEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCCceEEEeccCCC-------CcccHHHHhhccc
Q 042771 229 IFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQKVLVLAATNTP-------YALDQAIRRRFDK 293 (436)
Q Consensus 229 l~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~ 293 (436)
||||||+.|.. ..+..|+..++.... ...++.+|++|+.. ..+.+.|..|+.
T Consensus 237 l~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~- 303 (441)
T PRK10365 237 LFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLN- 303 (441)
T ss_pred EEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-
Confidence 99999999842 234555555543210 01145677777554 234555555663
Q ss_pred eEEcCCCCHHHHHH----HHHHHhCC-------CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 294 RIYIPLPDLKARQH----MFKVHLGD-------TPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 294 ~i~~~~p~~~~r~~----il~~~l~~-------~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
.+.+..|...+|.+ ++++++.. ....+++..+..|..+.+.-+.++|+.+++.++..
T Consensus 304 ~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~ 371 (441)
T PRK10365 304 VVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL 371 (441)
T ss_pred cceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 45566666655533 44444431 22347899999999999888999999999988764
No 264
>PRK09183 transposase/IS protein; Provisional
Probab=98.67 E-value=5.4e-08 Score=90.75 Aligned_cols=71 Identities=30% Similarity=0.384 Sum_probs=48.7
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch-HHHHHHHHHHHHHhcCCeEEEEcccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE-SEKLVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
..+++|+||||||||+|+.+++..+ |..+..+++.++...+... ....+..++... ...+.+++|||++.+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccC
Confidence 3589999999999999999998764 6677788877765433211 111233344332 235679999999875
No 265
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.65 E-value=1.5e-07 Score=78.33 Aligned_cols=72 Identities=26% Similarity=0.439 Sum_probs=49.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--------CCceEEEeccchhhh--h------------h--chHHHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--------DSTFFSISSSDLVSK--W------------M--GESEKLVSSLFQMAR 222 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--------~~~~~~v~~~~l~~~--~------------~--g~~~~~~~~~~~~a~ 222 (436)
..++++||||+|||++++.+++.+ ..+++.+++...... + . .........+.....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 679999999999999999999987 677888876543310 0 0 123444455555556
Q ss_pred hcCCeEEEEccccccc
Q 042771 223 ESAPSIIFIDEIDSLC 238 (436)
Q Consensus 223 ~~~p~il~iDeid~l~ 238 (436)
.....+|+|||+|.|.
T Consensus 85 ~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRRVVLLVIDEADHLF 100 (131)
T ss_dssp HCTEEEEEEETTHHHH
T ss_pred hcCCeEEEEeChHhcC
Confidence 6655699999999873
No 266
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.60 E-value=1.2e-07 Score=89.01 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=76.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCce---EEEeccchhhhhhchHHHHHHHHHHHH-----------HhcCCeEEEEc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTF---FSISSSDLVSKWMGESEKLVSSLFQMA-----------RESAPSIIFID 232 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~---~~v~~~~l~~~~~g~~~~~~~~~~~~a-----------~~~~p~il~iD 232 (436)
+++||+||+|||||++++.+-+.+...- ..++++... +...+..+.+.. ..++..|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~T------ts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQT------TSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTH------HHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCC------CHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 6899999999999999999887765332 234443321 122222222111 01134599999
Q ss_pred cccccccCCCCCCCchHHHHHHHHHHHHhhcCC--C-------CCCceEEEeccCCCC---cccHHHHhhccceEEcCCC
Q 042771 233 EIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--H-------NDQKVLVLAATNTPY---ALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 233 eid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--~-------~~~~v~vi~ttn~~~---~l~~~l~~Rf~~~i~~~~p 300 (436)
|++.-....- .....++-|-..++... . .-.++.+|++++++. .+++.++|.| .++.++.|
T Consensus 108 DlN~p~~d~y------gtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~~~~p 180 (272)
T PF12775_consen 108 DLNMPQPDKY------GTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILNIPYP 180 (272)
T ss_dssp TTT-S---TT------S--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE----
T ss_pred ccCCCCCCCC------CCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEEecCC
Confidence 9986433221 11222333333333211 1 112577888887643 5788999999 59999999
Q ss_pred CHHHHHHHHHHHhC
Q 042771 301 DLKARQHMFKVHLG 314 (436)
Q Consensus 301 ~~~~r~~il~~~l~ 314 (436)
+.+....|+..++.
T Consensus 181 ~~~sl~~If~~il~ 194 (272)
T PF12775_consen 181 SDESLNTIFSSILQ 194 (272)
T ss_dssp TCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh
Confidence 99999998887764
No 267
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.54 E-value=2.7e-06 Score=79.81 Aligned_cols=197 Identities=19% Similarity=0.287 Sum_probs=126.9
Q ss_pred CCCCccccccCcHHHHHHHHHHH-hccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 127 KPNVKWNDVAGLESAKQALQEAV-ILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~-~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.+...|+.+++.....+.+.+.. .+.+ .-..+||.|.+||||-.+|++.-... ..+|+.+||..+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~Am-----------lDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~l 266 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAM-----------LDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASL 266 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhc-----------cCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCC
Confidence 35567888888766555544322 2211 11469999999999999999987654 579999999877
Q ss_pred hhhhh-----chH--HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-----C---
Q 042771 203 VSKWM-----GES--EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-----N--- 267 (436)
Q Consensus 203 ~~~~~-----g~~--~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-----~--- 267 (436)
..... |.. ..-...+|+.|.. +.+|+|||..| +.+++..|+..+.+-+. .
T Consensus 267 Pe~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEm------------Sp~lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 267 PEDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEM------------SPRLQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred chhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhc------------CHHHHHHHHHHhcCCceeecCCcceE
Confidence 54321 111 1112345666543 48999999887 45567777777753321 1
Q ss_pred CCceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHHHHHH----HHHHHh-------CCCCCCCChhhHHHHH
Q 042771 268 DQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLKARQH----MFKVHL-------GDTPHNLTESDFESLA 329 (436)
Q Consensus 268 ~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~~r~~----il~~~l-------~~~~~~~~~~~~~~la 329 (436)
.-+|.|||+|..+ ..+-..+.-|. .++.+..|...+|.. +.+.++ ......++...+..|.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~ 410 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLT 410 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Confidence 1268899999765 24445566677 466666666555432 222222 2234557788899999
Q ss_pred HHcCCCCHHHHHHHHHHHhhh
Q 042771 330 RKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 330 ~~t~g~s~~dl~~l~~~a~~~ 350 (436)
++-+.-+.+++.+.+-+|+..
T Consensus 411 ~y~WpGNVRqL~N~iyRA~s~ 431 (511)
T COG3283 411 RYAWPGNVRQLKNAIYRALTL 431 (511)
T ss_pred HcCCCccHHHHHHHHHHHHHH
Confidence 998888889988887777644
No 268
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.53 E-value=5e-07 Score=87.92 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=62.3
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCC-ceEEEeccchhhhhhchH------HHHHHHHHHHHHhcCCeEEEEcccc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADS-TFFSISSSDLVSKWMGES------EKLVSSLFQMARESAPSIIFIDEID 235 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~-~~~~v~~~~l~~~~~g~~------~~~~~~~~~~a~~~~p~il~iDeid 235 (436)
..+++|++||||+|+|||+|.-.+...+.. .-..++...++....... ..-+..+...... ...||||||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~-~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK-ESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh-cCCEEEEeeee
Confidence 356799999999999999999999998865 333444444433211110 0112222222222 22499999998
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 236 SLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
. ..-....++..|+..+- ..++++|+|+|.+
T Consensus 138 V---------~DiaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 V---------TDIADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred c---------cchhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 5 22234445555555442 2458899999976
No 269
>PF05729 NACHT: NACHT domain
Probab=98.52 E-value=1.6e-06 Score=74.93 Aligned_cols=140 Identities=18% Similarity=0.265 Sum_probs=75.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCC---------ceEEEeccchhhh------------hhchHHHHHHH-HHHHHHhcC
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADS---------TFFSISSSDLVSK------------WMGESEKLVSS-LFQMARESA 225 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~---------~~~~v~~~~l~~~------------~~g~~~~~~~~-~~~~a~~~~ 225 (436)
-++|+|+||+|||++++.++..+.. .++.+.+...... ........+.. .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999987511 1233333322111 00011111111 122333456
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhcc--ceEEcCCCCHH
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFD--KRIYIPLPDLK 303 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~--~~i~~~~p~~~ 303 (436)
..+|+||.+|.+...... .........+...+... ...++.++.|++.. ... .+.+++. ..+.+...+.+
T Consensus 82 ~~llilDglDE~~~~~~~----~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~-~~~-~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS----QERQRLLDLLSQLLPQA--LPPGVKLIITSRPR-AFP-DLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred ceEEEEechHhcccchhh----hHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCC-hHH-HHHHhcCCCcEEEECCCCHH
Confidence 679999999998643211 11112222232333321 12334455555432 221 1444333 46888999999
Q ss_pred HHHHHHHHHhCC
Q 042771 304 ARQHMFKVHLGD 315 (436)
Q Consensus 304 ~r~~il~~~l~~ 315 (436)
+..++++.++..
T Consensus 154 ~~~~~~~~~f~~ 165 (166)
T PF05729_consen 154 DIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHhhc
Confidence 999999998753
No 270
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.49 E-value=1.3e-05 Score=90.41 Aligned_cols=177 Identities=18% Similarity=0.240 Sum_probs=99.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce---EEEeccch--
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF---FSISSSDL-- 202 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~---~~v~~~~l-- 202 (436)
+...+++++|.+...+.|..++... ....+-+-|+||+|+||||||+++++.+...| +.++...+
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 4567889999999999998876432 12346799999999999999999988764332 11111000
Q ss_pred -hhhh-----------hchHHHHHHH-------------HHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHH
Q 042771 203 -VSKW-----------MGESEKLVSS-------------LFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEL 257 (436)
Q Consensus 203 -~~~~-----------~g~~~~~~~~-------------~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~l 257 (436)
...+ .......+.. .....-..++.+|+|||++.. ..+..+
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--------------~~l~~L 314 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--------------DVLDAL 314 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--------------HHHHHH
Confidence 0000 0000011111 111222345679999998742 122333
Q ss_pred HHHhhcCCCCCCceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCC--hhhHHHHHHHcC
Q 042771 258 LVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLT--ESDFESLARKTE 333 (436)
Q Consensus 258 l~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~--~~~~~~la~~t~ 333 (436)
....+.. .....||.||.+ ..+.+ .++.++.++.|+.++-.+++..+.-....... .+....+++.+.
T Consensus 315 ~~~~~~~---~~GsrIIiTTrd-----~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 315 AGQTQWF---GSGSRIIVITKD-----KHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386 (1153)
T ss_pred HhhCccC---CCCcEEEEEeCc-----HHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhC
Confidence 3222211 122345666763 33333 35678899999999999988876543322111 122445667777
Q ss_pred CCC
Q 042771 334 GFS 336 (436)
Q Consensus 334 g~s 336 (436)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 754
No 271
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.49 E-value=3.3e-07 Score=91.28 Aligned_cols=163 Identities=21% Similarity=0.239 Sum_probs=93.1
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe---------ccchh-
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS---------SSDLV- 203 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~---------~~~l~- 203 (436)
.|.|++.+|.++.-++.....+..--++..+.-.++||+|.||||||-+.+.+++-....++... +.-..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 37899999999987765443322222223334468999999999999999999998766555432 11111
Q ss_pred ---hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHH---------HHHHhhcCCCCCCce
Q 042771 204 ---SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTE---------LLVQMQGVGHNDQKV 271 (436)
Q Consensus 204 ---~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~---------ll~~l~~~~~~~~~v 271 (436)
..|.-+... + .-...+|.+|||+|++....... .-+.+.+ +.+.+ ..++
T Consensus 530 PvtrEWTLEaGA-----L---VLADkGvClIDEFDKMndqDRtS-----IHEAMEQQSISISKAGIVtsL------qArc 590 (854)
T KOG0477|consen 530 PVTREWTLEAGA-----L---VLADKGVCLIDEFDKMNDQDRTS-----IHEAMEQQSISISKAGIVTSL------QARC 590 (854)
T ss_pred CccceeeeccCe-----E---EEccCceEEeehhhhhcccccch-----HHHHHHhcchhhhhhhHHHHH------Hhhh
Confidence 111101000 0 01134699999999985433211 1111111 22222 3457
Q ss_pred EEEeccCCC-----------C--cccHHHHhhccceEEcCC---CCHHHHHH--HHHHHhCC
Q 042771 272 LVLAATNTP-----------Y--ALDQAIRRRFDKRIYIPL---PDLKARQH--MFKVHLGD 315 (436)
Q Consensus 272 ~vi~ttn~~-----------~--~l~~~l~~Rf~~~i~~~~---p~~~~r~~--il~~~l~~ 315 (436)
.||+++|+. . .+...+++||+..-.+.. |-.+++.. ++..+...
T Consensus 591 tvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~ 652 (854)
T KOG0477|consen 591 TVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRH 652 (854)
T ss_pred hhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhc
Confidence 789999874 1 566889999985554432 44444433 44445543
No 272
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.44 E-value=1.6e-05 Score=71.76 Aligned_cols=179 Identities=14% Similarity=0.179 Sum_probs=104.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC---ceEEEeccch-----hhhhh----c--------hHHHHHHHHHHHHHhc-C
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS---TFFSISSSDL-----VSKWM----G--------ESEKLVSSLFQMARES-A 225 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~~~~l-----~~~~~----g--------~~~~~~~~~~~~a~~~-~ 225 (436)
.-+.++|+-|+|||+++|++...++. ..+.++...+ ...++ . ..+..-+.+....+++ .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 35889999999999999987776642 2233433222 11111 1 1122223344444444 4
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc-c---HHHHhhccceEEcCCCC
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL-D---QAIRRRFDKRIYIPLPD 301 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l-~---~~l~~Rf~~~i~~~~p~ 301 (436)
|.++++||++.+.... -.....|.+.-++... .-.++.++-..--..+ - ..+..|++..|.+++.+
T Consensus 132 ~v~l~vdEah~L~~~~---------le~Lrll~nl~~~~~~-~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 132 PVVLMVDEAHDLNDSA---------LEALRLLTNLEEDSSK-LLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred CeEEeehhHhhhChhH---------HHHHHHHHhhcccccC-ceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 5899999999884321 1111112222111111 1124444333211111 1 22333888779999999
Q ss_pred HHHHHHHHHHHhCCCC---CCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 302 LKARQHMFKVHLGDTP---HNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 302 ~~~r~~il~~~l~~~~---~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
.++-...++++++... ..+++..+..+...+.| .|.-|..+|..|...+.....
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~ 258 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGE 258 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCC
Confidence 9988888888887532 23567788899999998 567888888888877766543
No 273
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.44 E-value=4.2e-06 Score=76.94 Aligned_cols=100 Identities=23% Similarity=0.269 Sum_probs=62.5
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-----CceEE--Eeccchhh-h
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-----STFFS--ISSSDLVS-K 205 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-----~~~~~--v~~~~l~~-~ 205 (436)
.|.|+.-+++.+-.++...+..+. ...|-.+=|+|++||||+++++.||+.+- .+++. +....+.. +
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 378999998888887765544332 33445677899999999999999999862 12211 11111110 0
Q ss_pred hhc-hHHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 206 WMG-ESEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 206 ~~g-~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
++. .-++....+-..+...+.++.++||+|.|.
T Consensus 158 ~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 158 KIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 011 112333445555566777899999999983
No 274
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.41 E-value=1.8e-06 Score=80.50 Aligned_cols=162 Identities=18% Similarity=0.332 Sum_probs=98.5
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHH---HcCCceEEEeccchhhh-----
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVAT---EADSTFFSISSSDLVSK----- 205 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~---~l~~~~~~v~~~~l~~~----- 205 (436)
.+.|..+-.+.|.+++..... .....++++.||.|+|||++...... +.|-+++.+........
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--------~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al 96 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--------HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIAL 96 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--------hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHH
Confidence 367777777777766643221 13347899999999999998876543 56777777654332111
Q ss_pred ----------------hhchHHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 206 ----------------WMGESEKLVSSLFQMARES-----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 206 ----------------~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
..|.....+..+....+.. .+.|.++||||.+++... +..+.+.+|-.
T Consensus 97 ~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~r-----------QtllYnlfDis 165 (408)
T KOG2228|consen 97 KGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSR-----------QTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchh-----------hHHHHHHHHHH
Confidence 1233333344444444332 233555689998865431 22334444433
Q ss_pred CCCCCceEEEeccCCC---CcccHHHHhhccce-EEc-CCCCHHHHHHHHHHHhC
Q 042771 265 GHNDQKVLVLAATNTP---YALDQAIRRRFDKR-IYI-PLPDLKARQHMFKVHLG 314 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~---~~l~~~l~~Rf~~~-i~~-~~p~~~~r~~il~~~l~ 314 (436)
.....++.||+.|... +.+...+.+||... |++ |..+..+..++++..+.
T Consensus 166 qs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 166 QSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred hhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 3345567888877665 46678889999865 544 34558888889988873
No 275
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.40 E-value=8.2e-07 Score=96.53 Aligned_cols=135 Identities=20% Similarity=0.241 Sum_probs=92.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh------h-hhch----HHHHHHHHHHHHHhcCCeEEEEccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS------K-WMGE----SEKLVSSLFQMARESAPSIIFIDEI 234 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~------~-~~g~----~~~~~~~~~~~a~~~~p~il~iDei 234 (436)
.+++||-|.||+|||+|+.++|+..|-.+++++.++-.. . .+++ ....-...+...+. +..|++||+
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~--G~WVlLDEi 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRD--GGWVLLDEI 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhc--CCEEEeehh
Confidence 357999999999999999999999999999999764321 1 1111 11111122233333 359999999
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHhh-----------cCCCCCCceEEEeccCCC------CcccHHHHhhccceEEc
Q 042771 235 DSLCGQRGEGNESEASRRIKTELLVQMQ-----------GVGHNDQKVLVLAATNTP------YALDQAIRRRFDKRIYI 297 (436)
Q Consensus 235 d~l~~~~~~~~~~~~~~~~~~~ll~~l~-----------~~~~~~~~v~vi~ttn~~------~~l~~~l~~Rf~~~i~~ 297 (436)
..- +..++..|-..+| .....++++.|+++-|+. ..|+..++.|| .++++
T Consensus 1621 NLa------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~ 1687 (4600)
T COG5271 1621 NLA------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKM 1687 (4600)
T ss_pred hhh------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEe
Confidence 742 2233333333333 222345678888888766 37899999999 58899
Q ss_pred CCCCHHHHHHHHHHHhCC
Q 042771 298 PLPDLKARQHMFKVHLGD 315 (436)
Q Consensus 298 ~~p~~~~r~~il~~~l~~ 315 (436)
...+.+....|..+++..
T Consensus 1688 d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1688 DGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred cccccchHHHHHHhhCCc
Confidence 999999999998887753
No 276
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.40 E-value=2.1e-06 Score=73.95 Aligned_cols=71 Identities=21% Similarity=0.411 Sum_probs=47.2
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh------------------------hchHHHHHHHHHHHH
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW------------------------MGESEKLVSSLFQMA 221 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~------------------------~g~~~~~~~~~~~~a 221 (436)
++|+||||+|||+++..++..+ +.+++.++........ ..............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998876 5666666554322110 001111122334555
Q ss_pred HhcCCeEEEEcccccccc
Q 042771 222 RESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 222 ~~~~p~il~iDeid~l~~ 239 (436)
....+.+|+|||+..+..
T Consensus 82 ~~~~~~~lviDe~~~~~~ 99 (165)
T cd01120 82 ERGGDDLIILDELTRLVR 99 (165)
T ss_pred hCCCCEEEEEEcHHHHHH
Confidence 667889999999998754
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=8.7e-06 Score=68.19 Aligned_cols=24 Identities=29% Similarity=0.530 Sum_probs=22.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..++++|+||+||||++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 569999999999999999999876
No 278
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.35 E-value=1.6e-06 Score=69.51 Aligned_cols=23 Identities=52% Similarity=0.872 Sum_probs=20.9
Q ss_pred eEEecCCcchHHHHHHHHHHHcC
Q 042771 169 FLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~ 191 (436)
|+|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998764
No 279
>PHA00729 NTP-binding motif containing protein
Probab=98.35 E-value=1.8e-06 Score=77.71 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=23.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+++|+|+|||||||||.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999875
No 280
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.31 E-value=6.8e-06 Score=78.09 Aligned_cols=159 Identities=18% Similarity=0.185 Sum_probs=85.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHH--cCCc---eEEEeccch------hh----hh---------hchHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATE--ADST---FFSISSSDL------VS----KW---------MGESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~--l~~~---~~~v~~~~l------~~----~~---------~g~~~~~~~~~~~ 219 (436)
...+.+.|+|++|+|||+||..+++. .... ++.++...- .. .. ..........+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34478999999999999999999977 3322 222332211 00 00 0112333344444
Q ss_pred HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCC
Q 042771 220 MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPL 299 (436)
Q Consensus 220 ~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 299 (436)
.. ...+++|+||+++... .+..+...+.. ...+..||.||....-. ..+... ...+.++.
T Consensus 97 ~L-~~~~~LlVlDdv~~~~--------------~~~~l~~~~~~---~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LL-KDKRCLLVLDDVWDEE--------------DLEELREPLPS---FSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HH-CCTSEEEEEEEE-SHH--------------HH-------HC---HHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hh-ccccceeeeeeecccc--------------ccccccccccc---ccccccccccccccccc-cccccc-cccccccc
Confidence 33 3448999999998531 12222222211 12235577777654321 111111 36888999
Q ss_pred CCHHHHHHHHHHHhCCCC---CCCChhhHHHHHHHcCCCCHHHHHHH
Q 042771 300 PDLKARQHMFKVHLGDTP---HNLTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 300 p~~~~r~~il~~~l~~~~---~~~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
.+.++-.+++........ ....+.....|++.+.|. |-.|..+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~~ 202 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKLI 202 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccc
Confidence 999999999998876443 111245678899999874 4444444
No 281
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=2.4e-06 Score=71.57 Aligned_cols=73 Identities=25% Similarity=0.393 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEK-NPKIKEAITQKFTEYLRRAEEIRAVLDDGG 77 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~-d~~~~~~~~~k~~~y~~rae~lk~~l~~~~ 77 (436)
.+..|--.+.+||+.|+.|+|..|+.+|+++|+++.++++..+ |.+.|-.+..+...|+++++.+++++++..
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYLdqek 84 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYLDQEK 84 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 6778889999999999999999999999999999999999998 899999999999999999999999997643
No 282
>COG1485 Predicted ATPase [General function prediction only]
Probab=98.29 E-value=6.3e-06 Score=77.76 Aligned_cols=106 Identities=20% Similarity=0.339 Sum_probs=62.6
Q ss_pred hhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce-EEEeccchhhhh-------hchHHHHHHHHH-HHHHhcCCeE
Q 042771 158 FFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF-FSISSSDLVSKW-------MGESEKLVSSLF-QMARESAPSI 228 (436)
Q Consensus 158 ~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~-~~v~~~~l~~~~-------~g~~~~~~~~~~-~~a~~~~p~i 228 (436)
+|.....+++|++|||+-|+|||+|.-.+...+..+- ..++...++-.. .|+..- +..+- +.+. ...|
T Consensus 57 lf~r~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~~~--~~~v 133 (367)
T COG1485 57 LFGRDHGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADELAA--ETRV 133 (367)
T ss_pred ccccCCCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHh--cCCE
Confidence 3333456779999999999999999999998886533 444433333211 122211 11111 1112 2249
Q ss_pred EEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 229 IFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 229 l~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
|||||++. ..-....++..|+..+= ..+|++++|+|.+
T Consensus 134 LCfDEF~V---------tDI~DAMiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 134 LCFDEFEV---------TDIADAMILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred EEeeeeee---------cChHHHHHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 99999984 22233444555555443 2358899999865
No 283
>PF14516 AAA_35: AAA-like domain
Probab=98.27 E-value=0.00016 Score=70.16 Aligned_cols=172 Identities=20% Similarity=0.183 Sum_probs=95.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch-------------------------------
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE------------------------------- 209 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~------------------------------- 209 (436)
.++..+.|.||..+|||+|...+.+.+ +...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 344679999999999999999987665 6777777766542211000
Q ss_pred HHHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--CCCce-EEEeccCCCCcc
Q 042771 210 SEKLVSSLFQMA---RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--NDQKV-LVLAATNTPYAL 283 (436)
Q Consensus 210 ~~~~~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~v-~vi~ttn~~~~l 283 (436)
........|+.. ....|-||+|||||.++... ......+..|-...+.... ...++ ++++.+..+. +
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~-~ 181 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDY-I 181 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccc-c
Confidence 001111222211 12367899999999996431 1223333333333222111 11222 3333332222 1
Q ss_pred cHHH-Hh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 284 DQAI-RR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 284 ~~~l-~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
.... .+ .+...+.++..+.++...+++.+- ...++..++.|-..|.|.. .=++.+|...
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~----~~~~~~~~~~l~~~tgGhP-~Lv~~~~~~l 243 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYG----LEFSQEQLEQLMDWTGGHP-YLVQKACYLL 243 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhh----ccCCHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 1111 11 334567888889999988887763 3356777999999999854 3444444333
No 284
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.24 E-value=7.2e-06 Score=74.12 Aligned_cols=82 Identities=20% Similarity=0.382 Sum_probs=55.3
Q ss_pred hhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh-hh----------------------chHH
Q 042771 158 FFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK-WM----------------------GESE 211 (436)
Q Consensus 158 ~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~-~~----------------------g~~~ 211 (436)
++.++..+..-++|+||||+|||+++..++... +..+++++..++... .. .+..
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~ 83 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQG 83 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHH
Confidence 345566677889999999999999999988653 667888887652110 00 0111
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 212 KLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 212 ~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
..+..+...+....+.+|+||-+..+..
T Consensus 84 ~~~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 84 VAIQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 2244444445556789999999998754
No 285
>PHA02624 large T antigen; Provisional
Probab=98.23 E-value=5e-06 Score=84.21 Aligned_cols=124 Identities=16% Similarity=0.215 Sum_probs=75.1
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 241 (436)
+.+..+.++|+||||||||+++.++++.++...+.++++.-.+. |..--.....+++|||+-.-+...
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~ 494 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADN 494 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeecccccccc
Confidence 44555789999999999999999999999877888875542221 222112223599999986433211
Q ss_pred CCCCCchHHHHHHHHHHHHhhcC-CCC------CC----ceEEEeccCCCCcccHHHHhhccceEEcCC
Q 042771 242 GEGNESEASRRIKTELLVQMQGV-GHN------DQ----KVLVLAATNTPYALDQAIRRRFDKRIYIPL 299 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~~~-~~~------~~----~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 299 (436)
..- ..+..-.-...|-+.+||. ... +. --..|.|+|. ..++..+.-||..++.|..
T Consensus 495 ~~L-p~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 495 KDL-PSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred ccC-CcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 000 0000000024455666765 110 00 1235677775 6788899999998888854
No 286
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-05 Score=84.34 Aligned_cols=160 Identities=20% Similarity=0.325 Sum_probs=107.1
Q ss_pred cccccCc--HHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------CCceEEEec
Q 042771 132 WNDVAGL--ESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----------DSTFFSISS 199 (436)
Q Consensus 132 ~~dl~G~--~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----------~~~~~~v~~ 199 (436)
++-++|. +++++.+.-+. . +..++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 185 ldPvigr~deeirRvi~iL~-R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-R------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-c------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 5667775 55555554322 1 222789999999999999999999874 345566665
Q ss_pred cchh--hhhhchHHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 042771 200 SDLV--SKWMGESEKLVSSLFQMAR-ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAA 276 (436)
Q Consensus 200 ~~l~--~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 276 (436)
..+. .++-|+.+..++.+...+. ...+.||||||++.+.+.... ...-...+.| ..+-. .+.+.+|+|
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~----~~~~d~~nlL-kp~L~----rg~l~~IGa 322 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN----YGAIDAANLL-KPLLA----RGGLWCIGA 322 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc----chHHHHHHhh-HHHHh----cCCeEEEec
Confidence 5433 3566788899999998887 556679999999999876533 1122233322 22221 233778887
Q ss_pred cCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC
Q 042771 277 TNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG 314 (436)
Q Consensus 277 tn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~ 314 (436)
|... -.-+|++-+||+ .+.++.|+.+.-..||+..-.
T Consensus 323 tT~e~Y~k~iekdPalErrw~-l~~v~~pS~~~~~~iL~~l~~ 364 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQ-LVLVPIPSVENLSLILPGLSE 364 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcc-eeEeccCcccchhhhhhhhhh
Confidence 7533 245899999996 677899998776666665543
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.19 E-value=2.8e-06 Score=76.62 Aligned_cols=110 Identities=19% Similarity=0.252 Sum_probs=55.0
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc----------hhhhhhchHHHHHHHHHHHHH--hcCCeEEEEcc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD----------LVSKWMGESEKLVSSLFQMAR--ESAPSIIFIDE 233 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~----------l~~~~~g~~~~~~~~~~~~a~--~~~p~il~iDe 233 (436)
+..+||||+||+|||++|+.++.. .-++..+.+. +.......+...+...+..+. ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 356999999999999999998732 1122222110 000000111122222222222 23467999999
Q ss_pred cccccc------CCCCC---CCchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 234 IDSLCG------QRGEG---NESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 234 id~l~~------~~~~~---~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
++.|.. .+... ........+...|+..+..+...+.+|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 998754 11110 122223344455555555443444455555544
No 288
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.16 E-value=5.8e-05 Score=68.00 Aligned_cols=147 Identities=13% Similarity=0.130 Sum_probs=101.2
Q ss_pred CCcceEEecCCc-chHHHHHHHHHHHcCC---------ceEEEeccchh---hhhhchHHHHHHHHHHHH----HhcCCe
Q 042771 165 PWRAFLLYGPPG-TGKSYLAKAVATEADS---------TFFSISSSDLV---SKWMGESEKLVSSLFQMA----RESAPS 227 (436)
Q Consensus 165 ~~~~iLl~GppG-tGKT~la~aia~~l~~---------~~~~v~~~~l~---~~~~g~~~~~~~~~~~~a----~~~~p~ 227 (436)
-.+..||.|..+ +||..++..+++.+.+ .++.+.+..-. +... .-..++.+...+ ..+...
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I--~IdqIReL~~~l~~~p~~g~~K 91 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNI--SIEQIRKLQDFLSKTSAISGYK 91 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcc--cHHHHHHHHHHHhhCcccCCcE
Confidence 347899999998 9999999998887633 23334322100 0001 123344444433 334567
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHH
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQH 307 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 307 (436)
|++|+++|.|. ....+.||+.++ +++.++++|..|..+..+.+.++||| ..+.++.|+...-.+
T Consensus 92 ViII~~ae~mt------------~~AANALLKtLE---EPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e 155 (263)
T PRK06581 92 VAIIYSAELMN------------LNAANSCLKILE---DAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNE 155 (263)
T ss_pred EEEEechHHhC------------HHHHHHHHHhhc---CCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHH
Confidence 99999999983 345788999998 46777888888888999999999999 588999999988888
Q ss_pred HHHHHhCCCCCCCChhhHHHHHHHc
Q 042771 308 MFKVHLGDTPHNLTESDFESLARKT 332 (436)
Q Consensus 308 il~~~l~~~~~~~~~~~~~~la~~t 332 (436)
++...+... .+...++.|.+.+
T Consensus 156 ~~~~~~~p~---~~~~~l~~i~~~~ 177 (263)
T PRK06581 156 LYSQFIQPI---ADNKTLDFINRFT 177 (263)
T ss_pred HHHHhcccc---cccHHHHHHHHHh
Confidence 777665432 2444566666553
No 289
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.16 E-value=7.9e-06 Score=89.28 Aligned_cols=133 Identities=18% Similarity=0.269 Sum_probs=92.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch------hhhhhchHHH----HHHHHHHHHHhcCCeEEEEccccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL------VSKWMGESEK----LVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l------~~~~~g~~~~----~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
..+||.||+-+|||+++..+|++.|..|++++-.+- .+.|+..... .-.-+.+..+.+ -.|++||+..
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G--yWIVLDELNL 966 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG--YWIVLDELNL 966 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC--cEEEeecccc
Confidence 359999999999999999999999999999985432 3333322111 112334444444 4999999974
Q ss_pred cccCCCCCCCchHHHHHHHHHHHHhhc-----------CCCCCCceEEEeccCCC------CcccHHHHhhccceEEcCC
Q 042771 237 LCGQRGEGNESEASRRIKTELLVQMQG-----------VGHNDQKVLVLAATNTP------YALDQAIRRRFDKRIYIPL 299 (436)
Q Consensus 237 l~~~~~~~~~~~~~~~~~~~ll~~l~~-----------~~~~~~~v~vi~ttn~~------~~l~~~l~~Rf~~~i~~~~ 299 (436)
-+ ..++..|-..+|. +..+++++.+++|-|+| ..|..+++.|| ..++|..
T Consensus 967 Ap------------TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFdd 1033 (4600)
T COG5271 967 AP------------TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDD 1033 (4600)
T ss_pred Cc------------HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhccc
Confidence 31 2233333333442 23456678888888988 36789999999 6888888
Q ss_pred CCHHHHHHHHHHHhC
Q 042771 300 PDLKARQHMFKVHLG 314 (436)
Q Consensus 300 p~~~~r~~il~~~l~ 314 (436)
-..++...||+..++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 888899999887654
No 290
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.16 E-value=1.8e-05 Score=79.69 Aligned_cols=103 Identities=24% Similarity=0.347 Sum_probs=65.6
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh------c--------hHHHHHHHHHHHHH
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM------G--------ESEKLVSSLFQMAR 222 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~------g--------~~~~~~~~~~~~a~ 222 (436)
.++..+...++|+|+||+|||+|+..++... +..+++++..+...... + ..+..+..++..+.
T Consensus 74 gGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 74 GGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred cCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 3455666789999999999999999998765 56788887654332211 0 01122455666667
Q ss_pred hcCCeEEEEccccccccCCCC--CCCchHHHHHHHHHHHHhh
Q 042771 223 ESAPSIIFIDEIDSLCGQRGE--GNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~ll~~l~ 262 (436)
...|.+|+||.+..+....-. .+.....+.....|.....
T Consensus 154 ~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 154 EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 778899999999988653211 1122234444555555544
No 291
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.15 E-value=1.1e-05 Score=81.39 Aligned_cols=172 Identities=21% Similarity=0.288 Sum_probs=110.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--CCceEEEeccchhhhhhch-HHHHHHHHHHHHH---------hcCCeEEEEccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--DSTFFSISSSDLVSKWMGE-SEKLVSSLFQMAR---------ESAPSIIFIDEI 234 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--~~~~~~v~~~~l~~~~~g~-~~~~~~~~~~~a~---------~~~p~il~iDei 234 (436)
..+|+.|.|||||-.+++++-... ..+|+.+||..+.....++ .-.++...|.-+. ....+.+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 469999999999999999997665 5799999998765432211 0011111122111 113459999999
Q ss_pred cccccCCCCCCCchHHHHHHHHHHHHhhcCC-------CCCCceEEEeccCCC-------CcccHHHHhhccceEEcCCC
Q 042771 235 DSLCGQRGEGNESEASRRIKTELLVQMQGVG-------HNDQKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 235 d~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-------~~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p 300 (436)
..| .-.++..||..+..-. ...-.|.||++|+.+ ..+.+.|.-|.. .+.+..|
T Consensus 417 gd~------------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL~-~~~i~lP 483 (606)
T COG3284 417 GDM------------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRLN-AFVITLP 483 (606)
T ss_pred hhc------------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHhc-CeeeccC
Confidence 987 2344566666654221 122257889999875 234455555663 4555666
Q ss_pred CHHHHHH---HHHHHhC---CCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhH
Q 042771 301 DLKARQH---MFKVHLG---DTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 301 ~~~~r~~---il~~~l~---~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a 351 (436)
...+|.+ +|.+++. ..+..++++.+..|....+.-+-++|.++++.++..+
T Consensus 484 ~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 484 PLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred chhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 6655543 4444433 2556788999999988888889999999998887653
No 292
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.13 E-value=2.3e-05 Score=76.71 Aligned_cols=102 Identities=23% Similarity=0.319 Sum_probs=64.1
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh------c--------hHHHHHHHHHHHHHh
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM------G--------ESEKLVSSLFQMARE 223 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~------g--------~~~~~~~~~~~~a~~ 223 (436)
++..+..-++|+|+||+|||+|+..+|..+ +.++++++..+-..... + ..+..+..++..+..
T Consensus 77 GGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 77 GGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 355566789999999999999999998765 45777777543222110 0 012234556666677
Q ss_pred cCCeEEEEccccccccCCCC--CCCchHHHHHHHHHHHHhh
Q 042771 224 SAPSIIFIDEIDSLCGQRGE--GNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 224 ~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~ll~~l~ 262 (436)
..|.+|+||++..+...... ++.....+.....|.....
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 78999999999988643311 1122334445555555444
No 293
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.12 E-value=2.6e-05 Score=68.96 Aligned_cols=71 Identities=24% Similarity=0.272 Sum_probs=45.8
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh-------------------------------hchHH---
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW-------------------------------MGESE--- 211 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~-------------------------------~g~~~--- 211 (436)
++++||||||||+++..++... |.++++++..+-...+ .+...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887653 5667666643221110 00000
Q ss_pred HHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 212 KLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 212 ~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1234445555666889999999988753
No 294
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.09 E-value=0.00016 Score=80.03 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=87.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc--c-----hhhhh---h-----c---------------hHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS--D-----LVSKW---M-----G---------------ESEKLVSS 216 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~--~-----l~~~~---~-----g---------------~~~~~~~~ 216 (436)
+-++|+||+|.|||+++..++...+ ++..++.. + |.... . + .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5699999999999999999988776 55444432 1 10000 0 0 00112233
Q ss_pred HHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceE
Q 042771 217 LFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRI 295 (436)
Q Consensus 217 ~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i 295 (436)
++..... ..|.+|+|||+|.+. .......+..|+..+ .+++.+|.++...-.+.-.-++.-+..+
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~~------~~~~~lv~~sR~~~~~~~~~l~~~~~~~ 177 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRHQ------PENLTLVVLSRNLPPLGIANLRVRDQLL 177 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHhC------CCCeEEEEEeCCCCCCchHhHHhcCcce
Confidence 3333333 578899999999872 222333444444332 2334444455442223211111112233
Q ss_pred EcC----CCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCH
Q 042771 296 YIP----LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 296 ~~~----~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
.+. ..+.++-..++...+.. .+++..+..|.+.|.|...
T Consensus 178 ~l~~~~l~f~~~e~~~ll~~~~~~---~~~~~~~~~l~~~t~Gwp~ 220 (903)
T PRK04841 178 EIGSQQLAFDHQEAQQFFDQRLSS---PIEAAESSRLCDDVEGWAT 220 (903)
T ss_pred ecCHHhCCCCHHHHHHHHHhccCC---CCCHHHHHHHHHHhCChHH
Confidence 444 67888888888766543 3578889999999998643
No 295
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.07 E-value=9.3e-05 Score=72.36 Aligned_cols=81 Identities=20% Similarity=0.244 Sum_probs=47.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc-CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 243 (436)
...++++.||+|||||+++.+++... -..--.+++..+..... ...+... ....+|+|||+..+.-..
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~-------~~~lg~v--~~~DlLI~DEvgylp~~~-- 276 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS-------TRQIGLV--GRWDVVAFDEVATLKFAK-- 276 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH-------HHHHhhh--ccCCEEEEEcCCCCcCCc--
Confidence 34689999999999999999988762 10113333333332111 1122222 244699999999864322
Q ss_pred CCCchHHHHHHHHHHHHhh
Q 042771 244 GNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~ 262 (436)
...++..+-..|+
T Consensus 277 ------~~~~v~imK~yMe 289 (449)
T TIGR02688 277 ------PKELIGILKNYME 289 (449)
T ss_pred ------hHHHHHHHHHHHH
Confidence 3344555555565
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=0.00012 Score=71.90 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=83.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc-------CCceEEEeccchhhh-------h---------hchHHHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA-------DSTFFSISSSDLVSK-------W---------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l-------~~~~~~v~~~~l~~~-------~---------~g~~~~~~~~~~~~a~ 222 (436)
+..++|+||+|+||||++..+|..+ +..+..+++..+... | .......+...+...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~- 252 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS- 252 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-
Confidence 4689999999999999999998765 234444444332110 0 111222233333333
Q ss_pred hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhcc----ceEEcC
Q 042771 223 ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFD----KRIYIP 298 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~----~~i~~~ 298 (436)
....+|+||.+..+.. + ...+..+...++........++|+.+|.....+...+ ++|. ..+.+.
T Consensus 253 -~~~DlVLIDTaGr~~~-------~---~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~-~~~~~~~~~~~I~T 320 (388)
T PRK12723 253 -KDFDLVLVDTIGKSPK-------D---FMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF-HQFSPFSYKTVIFT 320 (388)
T ss_pred -CCCCEEEEcCCCCCcc-------C---HHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH-HHhcCCCCCEEEEE
Confidence 3456999999987631 1 1113444444443322234567777777766666444 3331 234454
Q ss_pred CCCHHHHHH-HHHHHhC------------CCCCCCChhhHHHHHHHcCCCCHHH
Q 042771 299 LPDLKARQH-MFKVHLG------------DTPHNLTESDFESLARKTEGFSGSD 339 (436)
Q Consensus 299 ~p~~~~r~~-il~~~l~------------~~~~~~~~~~~~~la~~t~g~s~~d 339 (436)
-.|...+.- ++..... ..+..+...+-..+++..-||+-++
T Consensus 321 KlDet~~~G~~l~~~~~~~~Pi~yit~Gq~vPeDl~~~~~~~~~~~l~g~~~~~ 374 (388)
T PRK12723 321 KLDETTCVGNLISLIYEMRKEVSYVTDGQIVPHNISIAEPLTFIKKINGYRISD 374 (388)
T ss_pred eccCCCcchHHHHHHHHHCCCEEEEeCCCCChhhhhhCCHHHHHHHhcCCCccc
Confidence 455433322 2222111 1122233445566777777776544
No 297
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.06 E-value=3.2e-05 Score=70.90 Aligned_cols=72 Identities=29% Similarity=0.470 Sum_probs=49.8
Q ss_pred cceEEecCCcchHHHHHHHHH------HHcCCceEEEeccchhhhhh-chHHHHHHHHHHHH--------HhcCCeEEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVA------TEADSTFFSISSSDLVSKWM-GESEKLVSSLFQMA--------RESAPSIIFI 231 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia------~~l~~~~~~v~~~~l~~~~~-g~~~~~~~~~~~~a--------~~~~p~il~i 231 (436)
..+||.||+|.|||+||+.|- +.+..+|+.|||..+.+... ...-..++..|.-+ +....+++|+
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfl 288 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFL 288 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEeh
Confidence 469999999999999999884 34688999999998865421 11111222223222 2235679999
Q ss_pred ccccccc
Q 042771 232 DEIDSLC 238 (436)
Q Consensus 232 Deid~l~ 238 (436)
|||..|.
T Consensus 289 deigelg 295 (531)
T COG4650 289 DEIGELG 295 (531)
T ss_pred HhhhhcC
Confidence 9999884
No 298
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.00 E-value=5e-05 Score=69.62 Aligned_cols=78 Identities=24% Similarity=0.302 Sum_probs=49.1
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh-----------------------------h-
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW-----------------------------M- 207 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~-----------------------------~- 207 (436)
++..+...++|.||||||||+++..++..+ +...++++..+-.... .
T Consensus 19 ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 19 GGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccC
Confidence 344556789999999999999986655433 5566666543211100 0
Q ss_pred -chHHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 208 -GESEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 208 -g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
......+..+...+....|.+++||++-.+.
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 0113344455555555678899999998764
No 299
>PRK04296 thymidine kinase; Provisional
Probab=97.99 E-value=7e-05 Score=66.58 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=40.6
Q ss_pred ceEEecCCcchHHHHHHHHHHHc---CCceEEEecc----c----hhhhhhch-H----HHHHHHHHHHH--HhcCCeEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS----D----LVSKWMGE-S----EKLVSSLFQMA--RESAPSII 229 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~----~----l~~~~~g~-~----~~~~~~~~~~a--~~~~p~il 229 (436)
-.+++||+|+|||+++..++..+ +..++.+.+. . +.+.. |. . ......++..+ ....+.+|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~l-g~~~~~~~~~~~~~~~~~~~~~~~~~dvv 82 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRI-GLSREAIPVSSDTDIFELIEEEGEKIDCV 82 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCC-CCcccceEeCChHHHHHHHHhhCCCCCEE
Confidence 47899999999999999888765 5555555331 1 11111 10 0 01122333332 33456799
Q ss_pred EEcccccc
Q 042771 230 FIDEIDSL 237 (436)
Q Consensus 230 ~iDeid~l 237 (436)
+|||++.+
T Consensus 83 iIDEaq~l 90 (190)
T PRK04296 83 LIDEAQFL 90 (190)
T ss_pred EEEccccC
Confidence 99999765
No 300
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.99 E-value=6.2e-06 Score=67.49 Aligned_cols=31 Identities=39% Similarity=0.665 Sum_probs=27.4
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
|+|.|||||||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999887766554
No 301
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.98 E-value=1.9e-05 Score=78.47 Aligned_cols=166 Identities=20% Similarity=0.256 Sum_probs=92.1
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCce---------EEEeccch
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF---------FSISSSDL 202 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~---------~~v~~~~l 202 (436)
.|.|++.+|+.+..++..... ..+.+ ..+.--+||+.|.|-+.||-|.+.+.+.....+ +-+.+.-.
T Consensus 302 SI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 478999999999887754322 11221 123335799999999999999999987653221 11111111
Q ss_pred hhhhhchHHHHHHHHHHHH-HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh--cC-CCCCCceEEEeccC
Q 042771 203 VSKWMGESEKLVSSLFQMA-RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ--GV-GHNDQKVLVLAATN 278 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~--~~-~~~~~~v~vi~ttn 278 (436)
..+--| +..+. .-| .-...+|+||||||.+..- ..-+.-+++.+--..+. |+ ..-+.++.|++++|
T Consensus 380 tD~eTG--ERRLE---AGAMVLADRGVVCIDEFDKMsDi-----DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAAN 449 (818)
T KOG0479|consen 380 TDQETG--ERRLE---AGAMVLADRGVVCIDEFDKMSDI-----DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAAN 449 (818)
T ss_pred eccccc--hhhhh---cCceEEccCceEEehhcccccch-----hHHHHHHHHhcceEEeEeccchhhhccceeeeeecC
Confidence 111111 12111 000 0113469999999998421 12223333333222221 11 12245788999999
Q ss_pred CCC-------------cccHHHHhhccceEEc-CCCCHHHHHHHHHH
Q 042771 279 TPY-------------ALDQAIRRRFDKRIYI-PLPDLKARQHMFKV 311 (436)
Q Consensus 279 ~~~-------------~l~~~l~~Rf~~~i~~-~~p~~~~r~~il~~ 311 (436)
+.+ .|+..|++||+..+.+ +.-+.+.-+.|-.+
T Consensus 450 PvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeH 496 (818)
T KOG0479|consen 450 PVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEH 496 (818)
T ss_pred ccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHH
Confidence 885 5678999999966544 44444433333333
No 302
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.97 E-value=0.00097 Score=66.24 Aligned_cols=121 Identities=19% Similarity=0.195 Sum_probs=70.6
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNES 247 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~ 247 (436)
.++|+||.+|||||+++.+.+.+...+++++..++......- ......+..+.......||||||+.+-
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~--------- 107 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVP--------- 107 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCch---------
Confidence 799999999999999998888876556666665554332211 111222222222244699999999762
Q ss_pred hHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC--CcccHHHHhhccceEEcCCCCHHHHHH
Q 042771 248 EASRRIKTELLVQMQGVGHNDQKVLVLAATNTP--YALDQAIRRRFDKRIYIPLPDLKARQH 307 (436)
Q Consensus 248 ~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~--~~l~~~l~~Rf~~~i~~~~p~~~~r~~ 307 (436)
.+.+.+..+. +.. . . ++++.+++... ..+.+.+..|. ..+.+.+.+..+...
T Consensus 108 -~W~~~lk~l~---d~~-~-~-~v~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~ 161 (398)
T COG1373 108 -DWERALKYLY---DRG-N-L-DVLITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLK 161 (398)
T ss_pred -hHHHHHHHHH---ccc-c-c-eEEEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHh
Confidence 2333333332 211 1 1 34444333222 23344555585 678888888888765
No 303
>PHA02774 E1; Provisional
Probab=97.97 E-value=4.3e-05 Score=77.31 Aligned_cols=107 Identities=20% Similarity=0.292 Sum_probs=63.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEE-EeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFS-ISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG 244 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~-v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~ 244 (436)
..+++|+||||||||+++.++++.++..++. +|... .+. +..+... .|++|||+-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw----------Lqpl~d~--ki~vlDD~t~-------- 490 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW----------LQPLADA--KIALLDDATH-------- 490 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc----------cchhccC--CEEEEecCcc--------
Confidence 4689999999999999999999999755544 55321 110 1222222 4999999821
Q ss_pred CCchHHHHHHHHHHHHhhcCCC----------CCCceEEEeccCCCCccc---HHHHhhccceEEcCC
Q 042771 245 NESEASRRIKTELLVQMQGVGH----------NDQKVLVLAATNTPYALD---QAIRRRFDKRIYIPL 299 (436)
Q Consensus 245 ~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~vi~ttn~~~~l~---~~l~~Rf~~~i~~~~ 299 (436)
..+.-+-..|-..++|... ......+|.|||..-.-+ ..|.+|+ ..+.|+.
T Consensus 491 ---~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n 554 (613)
T PHA02774 491 ---PCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPN 554 (613)
T ss_pred ---hHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCC
Confidence 1222333345566665411 011245778888553333 3455677 4666654
No 304
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=1.7e-05 Score=68.91 Aligned_cols=33 Identities=24% Similarity=0.494 Sum_probs=30.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
..|++.||||+||||+|+.+++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=5.9e-05 Score=73.43 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=60.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc----C-CceEEEeccchhh-------h---hhc------hHHHHHHHHHHHHHh
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA----D-STFFSISSSDLVS-------K---WMG------ESEKLVSSLFQMARE 223 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l----~-~~~~~v~~~~l~~-------~---~~g------~~~~~~~~~~~~a~~ 223 (436)
....++|+||+|+||||++..+|..+ | ..+..++...+.. . ..+ .....+...+.. .
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~--l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE--L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH--h
Confidence 34689999999999999999999763 3 2444444433310 0 000 011111222222 2
Q ss_pred cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHH
Q 042771 224 SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAI 287 (436)
Q Consensus 224 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l 287 (436)
....+|+||.+.... .+..+...+..+.........++|+.+++....+...+
T Consensus 214 ~~~DlVLIDTaG~~~-----------~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 214 RNKHMVLIDTIGMSQ-----------RDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred cCCCEEEEcCCCCCc-----------ccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 345799999987431 11223444445544433344577777777776666443
No 306
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.96 E-value=5.8e-05 Score=69.04 Aligned_cols=41 Identities=29% Similarity=0.493 Sum_probs=33.4
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
.++......++|+||||+|||+++..+|.+. +..+++++..
T Consensus 17 ~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 17 GGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 3455666789999999999999999998754 6778888776
No 307
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.96 E-value=5.6e-05 Score=61.26 Aligned_cols=52 Identities=19% Similarity=0.268 Sum_probs=40.5
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.|.|++-+++.+..++...+..+ ....+--+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 38999999999988886654322 22333556699999999999999999985
No 308
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.95 E-value=0.00053 Score=65.43 Aligned_cols=157 Identities=14% Similarity=0.149 Sum_probs=91.8
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh--------
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK-------- 205 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~-------- 205 (436)
.+.+.+.....|..++.. ....-|.+++|+|-.|||||.+++.+.+.++.+.+.+++.+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 466778888888876522 112344678999999999999999999999999999887654321
Q ss_pred -------hhchH----HHHHH---HHHHH---HHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC
Q 042771 206 -------WMGES----EKLVS---SLFQM---ARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN 267 (436)
Q Consensus 206 -------~~g~~----~~~~~---~~~~~---a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 267 (436)
..|.. ...+. .+|.. +... ....|++|.+|.+.. ...-++..|+..-+-...
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD---------~~a~ll~~l~~L~el~~~- 147 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD---------MDAILLQCLFRLYELLNE- 147 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc---------cchHHHHHHHHHHHHhCC-
Confidence 01110 11111 12222 2222 345888999999841 223344555444332212
Q ss_pred CCceEEEeccCCCCcccHHHHh----hccceEEcCCCCHHHHHHHHHHHh
Q 042771 268 DQKVLVLAATNTPYALDQAIRR----RFDKRIYIPLPDLKARQHMFKVHL 313 (436)
Q Consensus 268 ~~~v~vi~ttn~~~~l~~~l~~----Rf~~~i~~~~p~~~~r~~il~~~l 313 (436)
+.+.++... .++ +..... -....++||.|+.++...|+.+-.
T Consensus 148 -~~i~iils~-~~~--e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 148 -PTIVIILSA-PSC--EKQYLINTGTLEIVVLHFPQYSVEETQVILSRDN 193 (438)
T ss_pred -CceEEEEec-ccc--HHHhhcccCCCCceEEecCCCCHHHHHHHHhcCC
Confidence 223333222 221 112221 223578999999999999987644
No 309
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.91 E-value=8e-05 Score=68.58 Aligned_cols=78 Identities=21% Similarity=0.334 Sum_probs=51.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh-------------------------------
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW------------------------------- 206 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~------------------------------- 206 (436)
++.+.+..++++|+||+|||+++..++.+. +..+++++..+-...+
T Consensus 20 gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 20 GGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccc
Confidence 456667889999999999999999997653 6667666543221100
Q ss_pred --hchHHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 207 --MGESEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 207 --~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
.......+..+...+....|.+|+||++..+.
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 00113344444455555678899999998663
No 310
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.91 E-value=7.8e-05 Score=71.15 Aligned_cols=79 Identities=24% Similarity=0.291 Sum_probs=53.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh----------------hhchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK----------------WMGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 222 (436)
+.++.+.++|+||||||||+|+..++.+. +..++++++...... .....+..+..+...++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45556789999999999999988876553 667777765432210 01122333444444456
Q ss_pred hcCCeEEEEccccccccC
Q 042771 223 ESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~ 240 (436)
...+.+|+||-+-.|.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 677899999999998764
No 311
>PRK07261 topology modulation protein; Provisional
Probab=97.90 E-value=2.7e-05 Score=67.94 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=29.6
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.|+|+|+||+||||||+.++..++.+++.++.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999998888776443
No 312
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.89 E-value=2.3e-05 Score=68.01 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=20.5
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 313
>PRK10536 hypothetical protein; Provisional
Probab=97.89 E-value=0.00015 Score=66.49 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=31.2
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+.-+.+.......+..++.. ...+++.||+|||||+||.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 34455556555555554421 136999999999999999999885
No 314
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.89 E-value=0.00016 Score=66.65 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=31.3
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHH---cCCceEEEec
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISS 199 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~ 199 (436)
+.++..+...+|++||||||||+++..++.+ -|.+.++++.
T Consensus 14 l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ 57 (237)
T TIGR03877 14 LHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL 57 (237)
T ss_pred hcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe
Confidence 4456677789999999999999999887654 2556666653
No 315
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.89 E-value=2.6e-05 Score=69.57 Aligned_cols=122 Identities=18% Similarity=0.191 Sum_probs=57.6
Q ss_pred eEEecCCcchHHHHHHHH-HHH---cCCceEEEeccchhhhhhch-----HHH------------HHHHHHHHHHhcCCe
Q 042771 169 FLLYGPPGTGKSYLAKAV-ATE---ADSTFFSISSSDLVSKWMGE-----SEK------------LVSSLFQMARESAPS 227 (436)
Q Consensus 169 iLl~GppGtGKT~la~ai-a~~---l~~~~~~v~~~~l~~~~~g~-----~~~------------~~~~~~~~a~~~~p~ 227 (436)
.+++|.||+|||+.|-.. ... -|.+++. |...|.-..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988555 332 2555554 433221110000 000 001111111111467
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCC
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPL 299 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~ 299 (436)
+|+|||++.+++.+.... ......+ ..+... ...+.-|+.+|..+..+++.++++.+..+.+..
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~----~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEII----EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH----HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHH----HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 999999999988775410 1112222 333222 344577888999999999999987776666643
No 316
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.88 E-value=0.00059 Score=66.71 Aligned_cols=78 Identities=17% Similarity=0.176 Sum_probs=44.1
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC---CcccHHHHhhccceEEcCCCCHHH
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP---YALDQAIRRRFDKRIYIPLPDLKA 304 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~---~~l~~~l~~Rf~~~i~~~~p~~~~ 304 (436)
||+||.+..-.. .++..-..+.+.-..+-. .+-.+|+| .|++. ..|..++-+|.-+.|.+...+.+.
T Consensus 151 VVVIdnF~~k~~------~~~~iy~~laeWAa~Lv~--~nIAHVIF--lT~dv~~~k~LskaLPn~vf~tI~L~Das~~~ 220 (431)
T PF10443_consen 151 VVVIDNFLHKAE------ENDFIYDKLAEWAASLVQ--NNIAHVIF--LTDDVSYSKPLSKALPNRVFKTISLSDASPES 220 (431)
T ss_pred EEEEcchhccCc------ccchHHHHHHHHHHHHHh--cCccEEEE--ECCCCchhhhHHHhCCCCceeEEeecCCCHHH
Confidence 999999965311 122332333333322221 11223333 33333 466777777655889999999888
Q ss_pred HHHHHHHHhCC
Q 042771 305 RQHMFKVHLGD 315 (436)
Q Consensus 305 r~~il~~~l~~ 315 (436)
-+.++...+..
T Consensus 221 Ak~yV~~~L~~ 231 (431)
T PF10443_consen 221 AKQYVLSQLDE 231 (431)
T ss_pred HHHHHHHHhcc
Confidence 88887777754
No 317
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.88 E-value=1.6e-05 Score=80.32 Aligned_cols=61 Identities=21% Similarity=0.384 Sum_probs=45.8
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-CceEEE
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-STFFSI 197 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-~~~~~v 197 (436)
-|+|+.|++++++++.+++..... +.......++|.||||+|||+||+.+|+.+. .+++.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~------gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQ------GLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHH------hcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 578999999999999887743211 1122346899999999999999999999763 344444
No 318
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.86 E-value=0.00012 Score=70.00 Aligned_cols=79 Identities=22% Similarity=0.282 Sum_probs=53.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHH---cCCceEEEeccchhhh----------------hhchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDLVSK----------------WMGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 222 (436)
+.+..+-+.++||||||||+|+-.++.+ .+..+++++...-... .....+..+..+...++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 4455577999999999999999988754 3677777765432110 01122333344444455
Q ss_pred hcCCeEEEEccccccccC
Q 042771 223 ESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~ 240 (436)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 677899999999988764
No 319
>PRK13949 shikimate kinase; Provisional
Probab=97.83 E-value=0.00016 Score=62.87 Aligned_cols=32 Identities=34% Similarity=0.524 Sum_probs=29.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|+|+|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999998888766
No 320
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=97.81 E-value=0.00013 Score=54.05 Aligned_cols=64 Identities=19% Similarity=0.290 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCH-------HHHHHHHHHHHHHHHHHH
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNP-------KIKEAITQKFTEYLRRAE 67 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~-------~~~~~~~~k~~~y~~rae 67 (436)
.++++|+.+|.+|++.|+.|..++|+.+|.+|++.|.+++...... ..-..+++|+...+..+.
T Consensus 3 ~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~ 73 (79)
T cd02679 3 GYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVK 73 (79)
T ss_pred hHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999999999988655411 112235556665555443
No 321
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.81 E-value=0.00011 Score=65.34 Aligned_cols=74 Identities=24% Similarity=0.423 Sum_probs=48.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC--------CceEEEec-cchhhhhhc-------------hHHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD--------STFFSISS-SDLVSKWMG-------------ESEKLVSSLFQMA 221 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~--------~~~~~v~~-~~l~~~~~g-------------~~~~~~~~~~~~a 221 (436)
..+.+.|+.||||||||||.+-+|+-+. ..+..++. +++.....| ...-.-.-+....
T Consensus 135 ~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaI 214 (308)
T COG3854 135 NGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAI 214 (308)
T ss_pred cCceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHH
Confidence 3456899999999999999999998752 23334432 222221111 1112223456677
Q ss_pred HhcCCeEEEEcccccc
Q 042771 222 RESAPSIIFIDEIDSL 237 (436)
Q Consensus 222 ~~~~p~il~iDeid~l 237 (436)
+.+.|.|+++|||...
T Consensus 215 rsm~PEViIvDEIGt~ 230 (308)
T COG3854 215 RSMSPEVIIVDEIGTE 230 (308)
T ss_pred HhcCCcEEEEeccccH
Confidence 8889999999999863
No 322
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.79 E-value=0.0039 Score=60.30 Aligned_cols=30 Identities=27% Similarity=0.280 Sum_probs=25.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
.++..|.|+|+=|+|||++.+.+-+.+...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455789999999999999999998877443
No 323
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.79 E-value=2.3e-05 Score=68.40 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.1
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
++..|+|+|+||||||++++.+|+.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4568999999999999999999999998888543
No 324
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.78 E-value=0.00025 Score=64.87 Aligned_cols=100 Identities=23% Similarity=0.346 Sum_probs=63.1
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhh--------------------------h--
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSK--------------------------W-- 206 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~--------------------------~-- 206 (436)
+.++.+++..+|+.||||||||+++..++... |.++++++..+-... +
T Consensus 12 l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 12 LGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp TTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGG
T ss_pred hcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccc
Confidence 34566667889999999999999999876542 777777764321110 0
Q ss_pred -----hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh
Q 042771 207 -----MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 207 -----~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~ 262 (436)
.......+..+...+....+.+++||-+..+.... .....+..+..|...+.
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~~----~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSALLLYD----DPEELRRFLRALIKFLK 148 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTSS----SGGGHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhcC----CHHHHHHHHHHHHHHHH
Confidence 01234555666666667778999999999882221 22334555666666664
No 325
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.78 E-value=8.1e-05 Score=62.71 Aligned_cols=32 Identities=44% Similarity=0.720 Sum_probs=26.1
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
++++||||+||||+|+.+++.++ ...++...+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~ 33 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI 33 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence 78999999999999999999999 444544443
No 326
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.76 E-value=0.00037 Score=63.56 Aligned_cols=130 Identities=14% Similarity=0.268 Sum_probs=74.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC---ceEEEeccchhhhh--------h------chHHHHHHH----HHHHHH--
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS---TFFSISSSDLVSKW--------M------GESEKLVSS----LFQMAR-- 222 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~~~~l~~~~--------~------g~~~~~~~~----~~~~a~-- 222 (436)
+..+++.|++|||||+++..+...+.. +++.+... ....+ + .+.+..+.. +.+...
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~-~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~ 91 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPE-YNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKS 91 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecC-CchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhh
Confidence 357999999999999999999877643 22333221 11110 0 011111111 111111
Q ss_pred -h---cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcC
Q 042771 223 -E---SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIP 298 (436)
Q Consensus 223 -~---~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~ 298 (436)
. ..+.+|+|||+..- ..-...+..++.. ...-++.+|..+.....+++.++.-.+.++.+.
T Consensus 92 ~~~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~-----gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~ 156 (241)
T PF04665_consen 92 PQKKNNPRFLIILDDLGDK----------KLKSKILRQFFNN-----GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN 156 (241)
T ss_pred cccCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc-----ccccceEEEEEeeecccCCHHHhhcceEEEEec
Confidence 1 23679999997421 0112233344321 234468888888888999999988887777675
Q ss_pred CCCHHHHHHHHHHH
Q 042771 299 LPDLKARQHMFKVH 312 (436)
Q Consensus 299 ~p~~~~r~~il~~~ 312 (436)
.+......|++.+
T Consensus 157 -~s~~dl~~i~~~~ 169 (241)
T PF04665_consen 157 -NSKRDLENIYRNM 169 (241)
T ss_pred -CcHHHHHHHHHhc
Confidence 4666666666554
No 327
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.76 E-value=0.00028 Score=71.18 Aligned_cols=79 Identities=28% Similarity=0.349 Sum_probs=54.5
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh------ch--------HHHHHHHHHHHHHh
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM------GE--------SEKLVSSLFQMARE 223 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~------g~--------~~~~~~~~~~~a~~ 223 (436)
++..+..-++|+|+||+|||+|+..++..+ +.++++++..+-..... +- .+..+..+...+..
T Consensus 89 GGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~ 168 (454)
T TIGR00416 89 GGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEE 168 (454)
T ss_pred CCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHh
Confidence 455666789999999999999999997764 45677777644322110 00 01223455566667
Q ss_pred cCCeEEEEcccccccc
Q 042771 224 SAPSIIFIDEIDSLCG 239 (436)
Q Consensus 224 ~~p~il~iDeid~l~~ 239 (436)
..|.+|+||.+..+..
T Consensus 169 ~~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 169 ENPQACVIDSIQTLYS 184 (454)
T ss_pred cCCcEEEEecchhhcc
Confidence 7899999999998864
No 328
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.74 E-value=4.6e-05 Score=67.15 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=38.5
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc---eEEEeccch
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST---FFSISSSDL 202 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~---~~~v~~~~l 202 (436)
++|.++..+.|...+.. . ....++.++|+|++|+|||+|++.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~--------~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-A--------QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-T--------SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-H--------HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 68999999999887741 1 12334789999999999999999998776433 777776654
No 329
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.73 E-value=0.00056 Score=61.11 Aligned_cols=34 Identities=35% Similarity=0.566 Sum_probs=25.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
+..+|.||||||||++++.+...+ +..++.+.++
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 458889999999999999987654 5566666554
No 330
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.72 E-value=0.00013 Score=79.66 Aligned_cols=145 Identities=17% Similarity=0.178 Sum_probs=83.0
Q ss_pred CCCcceEEecCCcchHHHHH-HHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhc--------------CCeE
Q 042771 164 QPWRAFLLYGPPGTGKSYLA-KAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARES--------------APSI 228 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la-~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~--------------~p~i 228 (436)
...++++++||||+|||+|. -++-+++-..++.+|.+.... ++..+..+-+...-. .-.|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 34479999999999999964 466677777788877654321 122222221111100 1139
Q ss_pred EEEccccccccCCCCCCCc--hHHHHHHHH--HHHHhhcCCCCCCceEEEeccCCCCccc-----HHHHhhccceEEcCC
Q 042771 229 IFIDEIDSLCGQRGEGNES--EASRRIKTE--LLVQMQGVGHNDQKVLVLAATNTPYALD-----QAIRRRFDKRIYIPL 299 (436)
Q Consensus 229 l~iDeid~l~~~~~~~~~~--~~~~~~~~~--ll~~l~~~~~~~~~v~vi~ttn~~~~l~-----~~l~~Rf~~~i~~~~ 299 (436)
||.|||+ |.....-..++ -..+.++.. +...+..-...-.++++.+++|++.+.. ..+.|+- ..+++.+
T Consensus 1567 LFcDeIn-Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~y 1644 (3164)
T COG5245 1567 LFCDEIN-LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCY 1644 (3164)
T ss_pred EEeeccC-CccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecC
Confidence 9999998 43222111111 112222222 1111111111234688999999986443 4555544 5788899
Q ss_pred CCHHHHHHHHHHHhCC
Q 042771 300 PDLKARQHMFKVHLGD 315 (436)
Q Consensus 300 p~~~~r~~il~~~l~~ 315 (436)
|.......|.+.++..
T Consensus 1645 pe~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1645 PELASLRNIYEAVLMG 1660 (3164)
T ss_pred cchhhHHHHHHHHHHH
Confidence 9999999999887754
No 331
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.70 E-value=0.00043 Score=66.37 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.9
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..+++|++|||.-|||||+|.-.+-..+.
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~~ 139 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDALP 139 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcCC
Confidence 45679999999999999999998886653
No 332
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.69 E-value=0.00012 Score=68.40 Aligned_cols=95 Identities=14% Similarity=0.212 Sum_probs=61.8
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEe-ccchhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSIS-SSDLVS 204 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~-~~~l~~ 204 (436)
..+++++.-.+...+.|..++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~ 122 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI 122 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC
Confidence 45778887777777777766532 224589999999999999999987764 2344442 222211
Q ss_pred hh------hchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 205 KW------MGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 205 ~~------~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.. ..........+...+....|.+|+|+|+..
T Consensus 123 ~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 123 PGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 00 011112345666667778999999999963
No 333
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.67 E-value=3.6e-05 Score=63.49 Aligned_cols=32 Identities=41% Similarity=0.631 Sum_probs=29.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+||++|-|||||||++..+|..++..++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999998877664
No 334
>PRK14974 cell division protein FtsY; Provisional
Probab=97.65 E-value=0.00058 Score=65.87 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=27.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
+.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4789999999999999999888765 4455555543
No 335
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.64 E-value=0.00042 Score=62.04 Aligned_cols=103 Identities=20% Similarity=0.300 Sum_probs=55.1
Q ss_pred cceEEecCCcchHHHHHHHHHHH-----cCCce-------------EEEeccc-hh---hhhhchHHHHHHHHHHHHHhc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE-----ADSTF-------------FSISSSD-LV---SKWMGESEKLVSSLFQMARES 224 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~-----l~~~~-------------~~v~~~~-l~---~~~~g~~~~~~~~~~~~a~~~ 224 (436)
..++|.||+|+||||+++.++.. .|.++ ..++..+ +. +.+..+ ...+..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHHHHhccCC
Confidence 57899999999999999999853 34322 1111111 00 011111 13355555555445
Q ss_pred CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 225 APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 225 ~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
.|.++++||.-.-. +......+...++..+.. . +..+|.+|..+..
T Consensus 105 ~p~llllDEp~~gl-------D~~~~~~l~~~ll~~l~~----~-~~tiiivTH~~~~ 150 (199)
T cd03283 105 EPVLFLLDEIFKGT-------NSRERQAASAAVLKFLKN----K-NTIGIISTHDLEL 150 (199)
T ss_pred CCeEEEEecccCCC-------CHHHHHHHHHHHHHHHHH----C-CCEEEEEcCcHHH
Confidence 78999999975321 111222333444444431 1 3456667766543
No 336
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.64 E-value=8.6e-05 Score=66.47 Aligned_cols=68 Identities=22% Similarity=0.388 Sum_probs=42.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCC----ceEEEe-ccchhh---------hhhchHHHHHHHHHHHHHhcCCeEEEEcc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADS----TFFSIS-SSDLVS---------KWMGESEKLVSSLFQMARESAPSIIFIDE 233 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~----~~~~v~-~~~l~~---------~~~g~~~~~~~~~~~~a~~~~p~il~iDe 233 (436)
-++|.||+|+||||++++++..+.. .++.+. +.++.. ..++.....+...+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4899999999999999999888742 223221 111110 00111122244455556666899999999
Q ss_pred cc
Q 042771 234 ID 235 (436)
Q Consensus 234 id 235 (436)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 84
No 337
>PTZ00202 tuzin; Provisional
Probab=97.64 E-value=0.0038 Score=61.45 Aligned_cols=61 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred ccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
...+++|.+.....|...+... ....++-+.|.||+|||||+|++.+...++...+.++..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 3567999999999998877431 112235789999999999999999999998777777765
No 338
>PRK09354 recA recombinase A; Provisional
Probab=97.64 E-value=0.00045 Score=66.62 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=51.8
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHH---cCCceEEEeccchhhh-h---------------hchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDLVSK-W---------------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l~~~-~---------------~g~~~~~~~~~~~~a~ 222 (436)
+.+..+.++|+||||||||+|+-.++.+ .+...++++...-... + ....+..+..+-..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 4455578999999999999999988654 3667777765432110 0 1112333333334455
Q ss_pred hcCCeEEEEcccccccc
Q 042771 223 ESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~ 239 (436)
...+.+|+||-+-.|.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 66788999999998875
No 339
>PRK04328 hypothetical protein; Provisional
Probab=97.63 E-value=0.00075 Score=62.69 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=29.9
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHH---cCCceEEEec
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISS 199 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~ 199 (436)
+.++.++...+|++||||||||+|+..++.+ .|.+.++++.
T Consensus 16 L~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 16 LYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred hcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 3345566788999999999999999987654 2455555543
No 340
>PRK13695 putative NTPase; Provisional
Probab=97.63 E-value=0.0013 Score=57.57 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
.++|.|++|+|||||++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988765
No 341
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.63 E-value=0.00045 Score=62.82 Aligned_cols=40 Identities=33% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
++..+...++|+|+||+|||+++..+|.+. +.++++++..
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 455566779999999999999999998765 5677777553
No 342
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.61 E-value=0.0075 Score=61.29 Aligned_cols=109 Identities=13% Similarity=0.277 Sum_probs=80.3
Q ss_pred CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHH
Q 042771 226 PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKAR 305 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r 305 (436)
|+|+++.|+|.++.. . ...+.+..+...... .++.+|+.+. ...+++.|.+-+ .++.+|+|+.+++
T Consensus 82 ~~~~vl~d~h~~~~~------~-~~~r~l~~l~~~~~~----~~~~~i~~~~--~~~~p~el~~~~-~~~~~~lP~~~ei 147 (489)
T CHL00195 82 PALFLLKDFNRFLND------I-SISRKLRNLSRILKT----QPKTIIIIAS--ELNIPKELKDLI-TVLEFPLPTESEI 147 (489)
T ss_pred CcEEEEecchhhhcc------h-HHHHHHHHHHHHHHh----CCCEEEEEcC--CCCCCHHHHhce-eEEeecCcCHHHH
Confidence 689999999998721 1 222333334333332 3344555554 356777776655 6889999999999
Q ss_pred HHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 306 QHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 306 ~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
..+++.+.......+++..++.|++.+.|++..+++.++..+.
T Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 148 KKELTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999888877677788999999999999999999999988754
No 343
>PRK13947 shikimate kinase; Provisional
Probab=97.61 E-value=5.7e-05 Score=65.86 Aligned_cols=32 Identities=34% Similarity=0.462 Sum_probs=29.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999987765
No 344
>PRK05973 replicative DNA helicase; Provisional
Probab=97.60 E-value=0.00075 Score=61.69 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
++..+...++|.|+||+|||+++-.++... |.++++++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 355666789999999999999999887654 6666666543
No 345
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.60 E-value=0.00048 Score=56.97 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.5
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
+++++||+|+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999998887765
No 346
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.60 E-value=0.00017 Score=67.43 Aligned_cols=69 Identities=22% Similarity=0.381 Sum_probs=43.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC----------ceEEEe-ccchhhhh-------hc------hHHHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS----------TFFSIS-SSDLVSKW-------MG------ESEKLVSSLFQMAR 222 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~----------~~~~v~-~~~l~~~~-------~g------~~~~~~~~~~~~a~ 222 (436)
.+++|.||+|+|||||.+.++..+.. .+..++ ..++...+ .+ +.......++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 68999999999999999999988632 221111 11221111 00 01111334566677
Q ss_pred hcCCeEEEEcccc
Q 042771 223 ESAPSIIFIDEID 235 (436)
Q Consensus 223 ~~~p~il~iDeid 235 (436)
...|.||++||+.
T Consensus 192 ~~~P~villDE~~ 204 (270)
T TIGR02858 192 SMSPDVIVVDEIG 204 (270)
T ss_pred hCCCCEEEEeCCC
Confidence 7899999999963
No 347
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.60 E-value=0.00048 Score=62.94 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=31.4
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---C------CceEEEeccc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---D------STFFSISSSD 201 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~------~~~~~v~~~~ 201 (436)
++..+..-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 14 GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 14 GGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 455666789999999999999999998753 2 5667776543
No 348
>PRK06762 hypothetical protein; Provisional
Probab=97.59 E-value=0.00021 Score=61.96 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=30.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 4689999999999999999999997667677665554
No 349
>PRK00625 shikimate kinase; Provisional
Probab=97.59 E-value=6e-05 Score=65.74 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=28.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
+|+|+|.||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988776
No 350
>PRK03839 putative kinase; Provisional
Probab=97.59 E-value=5.7e-05 Score=66.52 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=28.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999998887654
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.58 E-value=0.0015 Score=68.49 Aligned_cols=155 Identities=23% Similarity=0.266 Sum_probs=88.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc--CCceEEEec--cc-----hhhh-------h---hc-------------hHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA--DSTFFSISS--SD-----LVSK-------W---MG-------------ESEKL 213 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l--~~~~~~v~~--~~-----l~~~-------~---~g-------------~~~~~ 213 (436)
.+-++|.-|.|.||||++-.++..+ +..+.-+++ ++ |.+. + .+ .....
T Consensus 37 ~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l 116 (894)
T COG2909 37 YRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESL 116 (894)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHH
Confidence 3679999999999999999998633 333333332 21 1110 0 01 12234
Q ss_pred HHHHHHHH-HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhcc
Q 042771 214 VSSLFQMA-RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFD 292 (436)
Q Consensus 214 ~~~~~~~a-~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~ 292 (436)
+..+|... ....|..++|||.|.+ .+......+..|++.. +.++.+|++|...-.+.-+-+|-=+
T Consensus 117 ~~~L~~Ela~~~~pl~LVlDDyHli--------~~~~l~~~l~fLl~~~------P~~l~lvv~SR~rP~l~la~lRlr~ 182 (894)
T COG2909 117 LSSLLNELASYEGPLYLVLDDYHLI--------SDPALHEALRFLLKHA------PENLTLVVTSRSRPQLGLARLRLRD 182 (894)
T ss_pred HHHHHHHHHhhcCceEEEecccccc--------CcccHHHHHHHHHHhC------CCCeEEEEEeccCCCCcccceeehh
Confidence 45555544 4457899999999987 3444555556565443 4456666666433222211111001
Q ss_pred ceEEcC----CCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCH
Q 042771 293 KRIYIP----LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSG 337 (436)
Q Consensus 293 ~~i~~~----~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~ 337 (436)
..+++. ..+.++-.+++.... +..++..+++.|...++|+..
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~---~l~Ld~~~~~~L~~~teGW~~ 228 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRG---SLPLDAADLKALYDRTEGWAA 228 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcC---CCCCChHHHHHHHhhcccHHH
Confidence 122222 256677777776654 234678889999999988644
No 352
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.58 E-value=0.00041 Score=63.85 Aligned_cols=80 Identities=18% Similarity=0.267 Sum_probs=50.4
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccchhh--hh----------------------
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSDLVS--KW---------------------- 206 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~l~~--~~---------------------- 206 (436)
.++..+..-+.|+||||||||+++..++... +..+++++..+-.. .+
T Consensus 13 ~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~ 92 (235)
T cd01123 13 GGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVAR 92 (235)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEe
Confidence 3456666789999999999999999997543 25677776544110 00
Q ss_pred ---hchHHHHHHHHHHHHHhc-CCeEEEEcccccccc
Q 042771 207 ---MGESEKLVSSLFQMARES-APSIIFIDEIDSLCG 239 (436)
Q Consensus 207 ---~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~ 239 (436)
..+....+..+-...... .+.+|+||-+..+..
T Consensus 93 ~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 93 AYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred cCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 001112223333334445 788999999998753
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.56 E-value=0.00082 Score=62.81 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=30.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
++..+...++++||||||||+++..++... |.++++++..
T Consensus 31 GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 31 GGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 355666789999999999999999887642 5566666543
No 354
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.56 E-value=0.0005 Score=60.15 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=22.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHcC
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~ 191 (436)
-++|+|+||+|||++++.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 389999999999999999999983
No 355
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.56 E-value=0.00095 Score=56.62 Aligned_cols=28 Identities=36% Similarity=0.409 Sum_probs=24.0
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
..++-.++|+||+|||||+|.+++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 3455679999999999999999999864
No 356
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.56 E-value=0.00051 Score=59.68 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=44.9
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh-----------------hchHHHHHHHHHHHHHhcCCeEEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW-----------------MGESEKLVSSLFQMARESAPSIIFI 231 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~-----------------~g~~~~~~~~~~~~a~~~~p~il~i 231 (436)
+|+.|++|+|||++|..++...+.+.+++....-.+.- ..+....+...+.... .+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~--~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKELD--PGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcC--CCCEEEE
Confidence 68999999999999999998877777777543221110 0111222333332211 4569999
Q ss_pred ccccccccCC
Q 042771 232 DEIDSLCGQR 241 (436)
Q Consensus 232 Deid~l~~~~ 241 (436)
|-+..+....
T Consensus 80 Dclt~~~~n~ 89 (169)
T cd00544 80 DCLTLWVTNL 89 (169)
T ss_pred EcHhHHHHHh
Confidence 9988765443
No 357
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.56 E-value=7.4e-05 Score=63.80 Aligned_cols=31 Identities=23% Similarity=0.432 Sum_probs=28.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
+|+|+|+||+|||++++.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998887655
No 358
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.55 E-value=0.00075 Score=58.70 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=29.2
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.+|+.||||+|||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999887777766543
No 359
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.55 E-value=0.00011 Score=69.10 Aligned_cols=100 Identities=23% Similarity=0.315 Sum_probs=60.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---ceEEEe-ccch
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---TFFSIS-SSDL 202 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~-~~~l 202 (436)
....++++++-.....+.+.+++...+ ....++++.||+|+||||+++++...+.. .++.+. ..++
T Consensus 98 ~~~~sle~l~~~~~~~~~~~~~l~~~v----------~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 98 SKPFSLEDLGESGSIPEEIAEFLRSAV----------RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp SS--CHCCCCHTHHCHHHHHHHHHHCH----------HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred cccccHhhccCchhhHHHHHHHHhhcc----------ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 355688888776666666666554321 22368999999999999999999998743 333332 1122
Q ss_pred hhh------h-hchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 203 VSK------W-MGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 203 ~~~------~-~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.-. + ..........++..+....|.+|+|.|+-.
T Consensus 168 ~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~ 208 (270)
T PF00437_consen 168 RLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRD 208 (270)
T ss_dssp --SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-S
T ss_pred eecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccCC
Confidence 110 0 011223455667777788999999999974
No 360
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.54 E-value=0.00053 Score=61.12 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=41.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh-------h-------------hchHHHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK-------W-------------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~-------~-------------~g~~~~~~~~~~~~a~ 222 (436)
|+-++|.||+|+||||.+-.+|..+ +..+-.+++..+... | .......+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3578999999999999999988765 444444443322110 0 0012333445555555
Q ss_pred hcCCeEEEEccccc
Q 042771 223 ESAPSIIFIDEIDS 236 (436)
Q Consensus 223 ~~~p~il~iDeid~ 236 (436)
...-.+|+||=...
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 54456999997654
No 361
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.53 E-value=0.0016 Score=63.42 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 139 ESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 139 ~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
..+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 456666665554433322211 1224679999999999999999999876 3445555543
No 362
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.53 E-value=0.00059 Score=61.78 Aligned_cols=22 Identities=36% Similarity=0.542 Sum_probs=20.3
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 363
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.51 E-value=0.0002 Score=69.47 Aligned_cols=25 Identities=28% Similarity=0.484 Sum_probs=22.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
...+|+||||+|||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 4588999999999999999998763
No 364
>PRK10867 signal recognition particle protein; Provisional
Probab=97.51 E-value=0.0082 Score=59.98 Aligned_cols=74 Identities=15% Similarity=0.284 Sum_probs=48.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhh----------------h----hchHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSK----------------W----MGESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~----------------~----~g~~~~~~~~~~~ 219 (436)
.++..++++||+|+||||++..+|..+ |..+..+++..+... + .............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345789999999999999888887754 556666665433221 0 0122334445555
Q ss_pred HHHhcCCeEEEEcccccc
Q 042771 220 MARESAPSIIFIDEIDSL 237 (436)
Q Consensus 220 ~a~~~~p~il~iDeid~l 237 (436)
.++.....+|+||=...+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666779999977654
No 365
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.50 E-value=0.00028 Score=70.06 Aligned_cols=97 Identities=15% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceE---EEe-ccch
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFF---SIS-SSDL 202 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~---~v~-~~~l 202 (436)
.-..+|++++......+.+..++.. |..-+|++||+|+||||...++.++++.+.. .+. +-++
T Consensus 232 ~~~l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~ 298 (500)
T COG2804 232 QVILDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEY 298 (500)
T ss_pred cccCCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeee
Confidence 3456788888888888888887743 3345888999999999999999999865433 221 1111
Q ss_pred hhhhhch------HHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 203 VSKWMGE------SEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 203 ~~~~~g~------~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.-..+.. ..-.....++...++.|.||++.||-.
T Consensus 299 ~~~gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIRD 338 (500)
T COG2804 299 QLPGINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIRD 338 (500)
T ss_pred ecCCcceeecccccCCCHHHHHHHHhccCCCeEEEeccCC
Confidence 1100000 011123445556677999999999974
No 366
>PRK14532 adenylate kinase; Provisional
Probab=97.50 E-value=9.1e-05 Score=65.71 Aligned_cols=34 Identities=32% Similarity=0.633 Sum_probs=27.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
+|+|.||||+||||+++.+|+.++..++ +..++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHH
Confidence 4899999999999999999999986654 444443
No 367
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.47 E-value=0.0001 Score=65.02 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=27.2
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
|+|+||||+||||+++.+|+.++. ..++..++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999985 445555544
No 368
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.47 E-value=0.0013 Score=65.63 Aligned_cols=71 Identities=14% Similarity=0.233 Sum_probs=45.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh---------------hhc-----hHHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK---------------WMG-----ESEKLVSSLFQMA 221 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~---------------~~g-----~~~~~~~~~~~~a 221 (436)
++..++|+|++|+||||++..+|..+ +..+..+++..+... +.+ .....+...+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999999999876 455666655433210 010 1122234444444
Q ss_pred HhcCCeEEEEcccccc
Q 042771 222 RESAPSIIFIDEIDSL 237 (436)
Q Consensus 222 ~~~~p~il~iDeid~l 237 (436)
... .+|+||....+
T Consensus 174 ~~~--DvVIIDTAGr~ 187 (437)
T PRK00771 174 KKA--DVIIVDTAGRH 187 (437)
T ss_pred hcC--CEEEEECCCcc
Confidence 443 69999998654
No 369
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.47 E-value=0.0016 Score=60.25 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=29.9
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~ 199 (436)
+..+..-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 44565789999999999999999887653 677777764
No 370
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.46 E-value=0.0003 Score=67.94 Aligned_cols=70 Identities=19% Similarity=0.340 Sum_probs=47.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC--ceEEEe-ccchhh------------h-hhchHHHHHHHHHHHHHhcCCeEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS--TFFSIS-SSDLVS------------K-WMGESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~-~~~l~~------------~-~~g~~~~~~~~~~~~a~~~~p~il 229 (436)
..+++++|++|+||||+++++...+.. .++.+. ..++.- . ..+...-....++..+....|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 368999999999999999999998753 233221 111110 0 011112235677788888899999
Q ss_pred EEcccc
Q 042771 230 FIDEID 235 (436)
Q Consensus 230 ~iDeid 235 (436)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999996
No 371
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.46 E-value=0.001 Score=62.08 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=62.1
Q ss_pred CCceEEEecc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC------CCCCCChhhHHHHHHHcCCCCHHH
Q 042771 268 DQKVLVLAAT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD------TPHNLTESDFESLARKTEGFSGSD 339 (436)
Q Consensus 268 ~~~v~vi~tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~------~~~~~~~~~~~~la~~t~g~s~~d 339 (436)
.+.+++|++| |+...++++|+||+ .++.+..++.++...+++..+.. ....++++.+..|+..++| |
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G----D 80 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG----D 80 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC----H
Confidence 4556666655 56689999999999 69999999999999999988853 2356889999999999998 8
Q ss_pred HHHHHHHHhh
Q 042771 340 ISVCVKDVLF 349 (436)
Q Consensus 340 l~~l~~~a~~ 349 (436)
.+.+++..-+
T Consensus 81 aR~aLN~LE~ 90 (300)
T PRK14700 81 CRKILNLLER 90 (300)
T ss_pred HHHHHHHHHH
Confidence 8877765443
No 372
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=0.0012 Score=63.71 Aligned_cols=104 Identities=21% Similarity=0.313 Sum_probs=73.3
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHHcC--CceEEEeccchhhhh--------------hchHHHHHHHHHHHHH
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD--STFFSISSSDLVSKW--------------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~--~~~~~v~~~~l~~~~--------------~g~~~~~~~~~~~~a~ 222 (436)
+.++.-+..-+||-|.||.|||||.-.++..+. .++++|+..+-.... .--.+..+..+...+.
T Consensus 86 LGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 86 LGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred hcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 334556667899999999999999999888762 378999876543321 1123556778888888
Q ss_pred hcCCeEEEEccccccccCCCC--CCCchHHHHHHHHHHHHhh
Q 042771 223 ESAPSIIFIDEIDSLCGQRGE--GNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~~~~--~~~~~~~~~~~~~ll~~l~ 262 (436)
...|.+++||-|..+....-. ++.-...+.....|...-.
T Consensus 166 ~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 166 QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 899999999999999876532 2233445666666655443
No 373
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.46 E-value=0.00053 Score=66.88 Aligned_cols=69 Identities=22% Similarity=0.373 Sum_probs=44.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC----CceEEEe-ccchh---------hhhhchHHHHHHHHHHHHHhcCCeEEEEc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD----STFFSIS-SSDLV---------SKWMGESEKLVSSLFQMARESAPSIIFID 232 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~-~~~l~---------~~~~g~~~~~~~~~~~~a~~~~p~il~iD 232 (436)
..++|.||+|+||||+++++...+. ..++.+. +.++. ..-.+.........+..+....|.+|++|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~vg 202 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILIG 202 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEEe
Confidence 5699999999999999999998764 2333332 11211 00112111224555666667899999999
Q ss_pred ccc
Q 042771 233 EID 235 (436)
Q Consensus 233 eid 235 (436)
|+-
T Consensus 203 Eir 205 (343)
T TIGR01420 203 EMR 205 (343)
T ss_pred CCC
Confidence 985
No 374
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.45 E-value=0.0054 Score=57.38 Aligned_cols=90 Identities=18% Similarity=0.252 Sum_probs=57.2
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHH
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKL 213 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~ 213 (436)
+++-.+++.+-+....... ..|..++||.|..|+||+++++..|.-++..++.+....-. ...+....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL----------~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y--~~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVL----------SQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGY--SIKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHHH----------CSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTT--HHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHH----------cCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCc--CHHHHHHH
Confidence 4666677777666544321 24457899999999999999999999999999988754311 12234455
Q ss_pred HHHHHHHHH-hcCCeEEEEcccc
Q 042771 214 VSSLFQMAR-ESAPSIIFIDEID 235 (436)
Q Consensus 214 ~~~~~~~a~-~~~p~il~iDeid 235 (436)
++.++..+- .+.|.+++|+|-+
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~q 99 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDSQ 99 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECCC
T ss_pred HHHHHHHHhccCCCeEEEecCcc
Confidence 666666554 4568888887754
No 375
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.45 E-value=0.00036 Score=64.55 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=23.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
+..++|.||+|+|||+|++.+++.+..
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 357999999999999999999998754
No 376
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.45 E-value=0.0012 Score=58.08 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=22.8
Q ss_pred cceEEecCCcchHHH-HHHHHHHHcC----CceEEEec
Q 042771 167 RAFLLYGPPGTGKSY-LAKAVATEAD----STFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~-la~aia~~l~----~~~~~v~~ 199 (436)
.++++.||+|+|||+ ++..+...+. ..++.+.+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 579999999999999 5555555443 33555544
No 377
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.45 E-value=0.0017 Score=59.23 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=31.7
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
+.++.++...+++.|+||+|||+++..++... +.++++++..
T Consensus 9 l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 9 LGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 33455666789999999999999999887642 6667676643
No 378
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.45 E-value=0.00011 Score=64.49 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=30.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
+-++|.|+||+||||+++.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 469999999999999999999999887776655433
No 379
>PRK06217 hypothetical protein; Validated
Probab=97.44 E-value=0.00013 Score=64.51 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=28.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999998876655
No 380
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00011 Score=62.98 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=30.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
.+|+|.|++|+||||+.+++|+.++.+|+..+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 579999999999999999999999999988763
No 381
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.43 E-value=0.0005 Score=67.23 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=45.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC-----CceEEEe-ccchh-----------hhhhchHHHHHHHHHHHHHhcCCeEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD-----STFFSIS-SSDLV-----------SKWMGESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~-----~~~~~v~-~~~l~-----------~~~~g~~~~~~~~~~~~a~~~~p~il 229 (436)
..+|++||+|+||||+++++...+. ..++.+. +.++. ..-++............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988762 3444442 21211 00111111234456666777899999
Q ss_pred EEccccc
Q 042771 230 FIDEIDS 236 (436)
Q Consensus 230 ~iDeid~ 236 (436)
++.|+-.
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999963
No 382
>PRK13948 shikimate kinase; Provisional
Probab=97.42 E-value=0.00017 Score=63.44 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=31.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.++..|+|.|.+|+||||+++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998665
No 383
>PRK14531 adenylate kinase; Provisional
Probab=97.42 E-value=0.00014 Score=64.25 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=27.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|+||||+||||+++.+|+.+|.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 3599999999999999999999998776543
No 384
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.42 E-value=0.011 Score=56.78 Aligned_cols=116 Identities=16% Similarity=0.150 Sum_probs=64.0
Q ss_pred CCeEEEEccccccccCCCCC-----CCchHHHHHHHHHHHHhhcCCCCCCceEE--EeccCCC---C--cccHHHHhhcc
Q 042771 225 APSIIFIDEIDSLCGQRGEG-----NESEASRRIKTELLVQMQGVGHNDQKVLV--LAATNTP---Y--ALDQAIRRRFD 292 (436)
Q Consensus 225 ~p~il~iDeid~l~~~~~~~-----~~~~~~~~~~~~ll~~l~~~~~~~~~v~v--i~ttn~~---~--~l~~~l~~Rf~ 292 (436)
.|.++.||++..++....-. .-....-.+...|+..+.+-..-.+..+| +++|... . .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 47788899999998764211 11222233444555554433222223333 4444322 2 34444443321
Q ss_pred ---------------------ceEEcCCCCHHHHHHHHHHHhCCCCCC---CChhhHHHHHHHcCCCCHHHHH
Q 042771 293 ---------------------KRIYIPLPDLKARQHMFKVHLGDTPHN---LTESDFESLARKTEGFSGSDIS 341 (436)
Q Consensus 293 ---------------------~~i~~~~p~~~~r~~il~~~l~~~~~~---~~~~~~~~la~~t~g~s~~dl~ 341 (436)
..+.++..+.+|-..+++.+....-.. .++...+.+...+. .+++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~-GNp~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSN-GNPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcC-CCHHHhc
Confidence 268899999999999999987654332 23444455555554 4676664
No 385
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.42 E-value=0.0016 Score=58.30 Aligned_cols=21 Identities=29% Similarity=0.572 Sum_probs=19.7
Q ss_pred cceEEecCCcchHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia 187 (436)
+.++|+||.|+||||+.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
No 386
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.41 E-value=0.0036 Score=53.49 Aligned_cols=115 Identities=15% Similarity=0.200 Sum_probs=61.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHc---CCceEEE---ecc----ch--hhh--------------h----hchHHHHHHHH
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA---DSTFFSI---SSS----DL--VSK--------------W----MGESEKLVSSL 217 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l---~~~~~~v---~~~----~l--~~~--------------~----~g~~~~~~~~~ 217 (436)
-+.+|+++|.|||++|-.+|-.. |..+..+ ... +. ... | ..+.....+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47788999999999999987653 4444332 111 00 000 0 00111122333
Q ss_pred HHHH----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccc
Q 042771 218 FQMA----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDK 293 (436)
Q Consensus 218 ~~~a----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~ 293 (436)
+..+ ......+|+|||+-....-.--+ ...++..++. .+...=||.|.+. .++.++.+-|.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~---------~~~v~~ll~~---rp~~~evIlTGr~---~p~~l~e~AD~ 148 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLD---------VEEVVDLLKA---KPEDLELVLTGRN---APKELIEAADL 148 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCC---------HHHHHHHHHc---CCCCCEEEEECCC---CCHHHHHhCce
Confidence 3333 34467899999998764332111 2345555553 3344556667654 46667766665
Q ss_pred eEEc
Q 042771 294 RIYI 297 (436)
Q Consensus 294 ~i~~ 297 (436)
+-++
T Consensus 149 VTEm 152 (159)
T cd00561 149 VTEM 152 (159)
T ss_pred eeec
Confidence 5444
No 387
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.41 E-value=0.00067 Score=65.11 Aligned_cols=72 Identities=18% Similarity=0.362 Sum_probs=46.3
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEe-ccchhhh---h---------hchHHHHHHHHHHHHHhcCCeE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSIS-SSDLVSK---W---------MGESEKLVSSLFQMARESAPSI 228 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~-~~~l~~~---~---------~g~~~~~~~~~~~~a~~~~p~i 228 (436)
....++++.||+|+||||++++++..+.. .++.+. ..++... . .+...-.+..++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 44578999999999999999999987632 222221 1111000 0 0111223456677777789999
Q ss_pred EEEcccc
Q 042771 229 IFIDEID 235 (436)
Q Consensus 229 l~iDeid 235 (436)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999986
No 388
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00016 Score=63.26 Aligned_cols=32 Identities=41% Similarity=0.664 Sum_probs=25.7
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.|+|.||||+||||+|+.+++.++. ..++..+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i--~hlstgd 33 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTGD 33 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHhH
Confidence 4899999999999999999999654 4444333
No 389
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.41 E-value=0.0012 Score=67.38 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=58.2
Q ss_pred hhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh---------------------------
Q 042771 158 FFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM--------------------------- 207 (436)
Q Consensus 158 ~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~--------------------------- 207 (436)
++.++..+...+|+.||||+|||+|+-.++.+. |-+.++++..+-.....
T Consensus 255 ~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~ 334 (484)
T TIGR02655 255 MCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPE 334 (484)
T ss_pred HhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccc
Confidence 344566777889999999999999999998764 55666665433211100
Q ss_pred -chHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 208 -GESEKLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 208 -g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
...+..+..+.+.+....|.+|+||-+..+..
T Consensus 335 ~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 335 SAGLEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred cCChHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 01255677777888888899999999987743
No 390
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.40 E-value=0.0025 Score=58.37 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
.++..+...++|+||||+|||+++..++... +...++++.
T Consensus 14 ~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~ 56 (229)
T TIGR03881 14 EGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT 56 (229)
T ss_pred cCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc
Confidence 3455666889999999999999999876532 445555553
No 391
>PF13479 AAA_24: AAA domain
Probab=97.40 E-value=0.00082 Score=60.90 Aligned_cols=66 Identities=27% Similarity=0.315 Sum_probs=37.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch---hh------hhhchHHHHHHHHHHHH--HhcCCeEEEEcccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL---VS------KWMGESEKLVSSLFQMA--RESAPSIIFIDEID 235 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l---~~------~~~g~~~~~~~~~~~~a--~~~~p~il~iDeid 235 (436)
..++|||+||+|||+++..+ + ..+.+++..= .. .+.-.+-..+...+..+ ......+|+||-++
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----~-k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis 78 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----P-KPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSIS 78 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----C-CeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHH
Confidence 57999999999999999888 2 2223322111 00 00011233344444333 23455699999887
Q ss_pred cc
Q 042771 236 SL 237 (436)
Q Consensus 236 ~l 237 (436)
.+
T Consensus 79 ~~ 80 (213)
T PF13479_consen 79 WL 80 (213)
T ss_pred HH
Confidence 65
No 392
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.39 E-value=0.00064 Score=57.86 Aligned_cols=34 Identities=24% Similarity=0.488 Sum_probs=28.3
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
++|+|+||+|||++++.++..+ +...+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999988 666677765444
No 393
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.027 Score=54.85 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 138 LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 138 ~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.+.+...+.+.+...+..+..+. ..++..++|+||+|+||||++..+|..+ +..+..+++..+
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDty 245 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCcc
Confidence 46677777777765444333332 2345789999999999999999998765 445555555433
No 394
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.38 E-value=0.00041 Score=66.12 Aligned_cols=69 Identities=22% Similarity=0.363 Sum_probs=46.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC-----CceEEEe-ccchh-------hhhhchHHHHHHHHHHHHHhcCCeEEEEcc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD-----STFFSIS-SSDLV-------SKWMGESEKLVSSLFQMARESAPSIIFIDE 233 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~-----~~~~~v~-~~~l~-------~~~~g~~~~~~~~~~~~a~~~~p~il~iDe 233 (436)
.+++++||+|+||||++++++..+. ..++.+. ..++. .-........+..++..+.+..|..|++.|
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivGE 212 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVGE 212 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 6899999999999999999998862 3333332 11111 000011111456677778888999999999
Q ss_pred cc
Q 042771 234 ID 235 (436)
Q Consensus 234 id 235 (436)
+-
T Consensus 213 iR 214 (299)
T TIGR02782 213 VR 214 (299)
T ss_pred cC
Confidence 86
No 395
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.38 E-value=0.00016 Score=61.63 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=24.9
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
++|+|+||+||||+++.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 396
>PRK14530 adenylate kinase; Provisional
Probab=97.38 E-value=0.00017 Score=65.56 Aligned_cols=31 Identities=29% Similarity=0.454 Sum_probs=27.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.||||+||||+++.+|+.++.+++..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999776644
No 397
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.38 E-value=0.00014 Score=64.42 Aligned_cols=70 Identities=24% Similarity=0.447 Sum_probs=44.5
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC--ceEEEe-ccchhh---hh----------hchHHHHHHHHHHHHHhcCCeEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS--TFFSIS-SSDLVS---KW----------MGESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~-~~~l~~---~~----------~g~~~~~~~~~~~~a~~~~p~il 229 (436)
...++|.||+|+||||++++++..+.. ..+.+. ..++.. .+ .+.....+..++..+....|.++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i 104 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI 104 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence 467999999999999999999987632 222221 111100 00 00112234566666777789999
Q ss_pred EEcccc
Q 042771 230 FIDEID 235 (436)
Q Consensus 230 ~iDeid 235 (436)
++.|+-
T Consensus 105 ~igEir 110 (186)
T cd01130 105 IVGEVR 110 (186)
T ss_pred EEEccC
Confidence 999995
No 398
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.38 E-value=0.0013 Score=56.83 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEeccchh--------hhhhc-----hHHHHHHHHHHHHHhcCCe
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSSDLV--------SKWMG-----ESEKLVSSLFQMARESAPS 227 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~~l~--------~~~~g-----~~~~~~~~~~~~a~~~~p~ 227 (436)
..+...+.|.||+|+|||||++.++..... --+.++..++. ...++ .....-+-.+..+....|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 345567999999999999999999976521 11222221111 00000 1112223345555667889
Q ss_pred EEEEccccc
Q 042771 228 IIFIDEIDS 236 (436)
Q Consensus 228 il~iDeid~ 236 (436)
++++||-..
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999754
No 399
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00015 Score=60.87 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=26.1
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
|-+.|||||||||+++.+|..+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999998876
No 400
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.37 E-value=0.0016 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.3
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
..++|+||.|+||||+.+.++.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5699999999999999999983
No 401
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.37 E-value=0.00016 Score=61.04 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=27.9
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
|+|.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999988776
No 402
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.002 Score=56.87 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=71.5
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc----hh-----------------------------hh
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD----LV-----------------------------SK 205 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~----l~-----------------------------~~ 205 (436)
+.+.+.-+++.|+.|||||.|.+.++.-+ +..+.+++... +. ..
T Consensus 24 GiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~ 103 (235)
T COG2874 24 GIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNW 103 (235)
T ss_pred CCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEeccccccc
Confidence 44555668889999999999999998643 33333332110 00 00
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccH
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQ 285 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~ 285 (436)
........+..+.+..+.....||+||-+..++... .......++..+..+... ++ +||. |-+|..+++
T Consensus 104 ~~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~-gK-vIil-Tvhp~~l~e 172 (235)
T COG2874 104 GRRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDL-GK-VIIL-TVHPSALDE 172 (235)
T ss_pred ChHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhC-CC-EEEE-EeChhhcCH
Confidence 122345667777777777778899999998875332 222344455555554322 22 3333 445778888
Q ss_pred HHHhhc
Q 042771 286 AIRRRF 291 (436)
Q Consensus 286 ~l~~Rf 291 (436)
+++.|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 777654
No 403
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.36 E-value=0.0012 Score=62.23 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=29.5
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~ 199 (436)
+..+...++|.||||+|||+++..++..+ +.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555679999999999999999887653 566666654
No 404
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.35 E-value=0.00055 Score=63.63 Aligned_cols=34 Identities=26% Similarity=0.479 Sum_probs=27.9
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
|+|+|+||+||||+|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 456666665444
No 405
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.34 E-value=0.00017 Score=62.28 Aligned_cols=27 Identities=41% Similarity=0.691 Sum_probs=24.1
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
++|.||+|+||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999986554
No 406
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.34 E-value=0.00062 Score=60.70 Aligned_cols=111 Identities=22% Similarity=0.275 Sum_probs=59.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~ 243 (436)
.....++|.|+.|+|||+.++.++.+. +.-+..... .......+... -|+.|||++.+...
T Consensus 50 k~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~------~kd~~~~l~~~------~iveldEl~~~~k~--- 110 (198)
T PF05272_consen 50 KNDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFD------DKDFLEQLQGK------WIVELDELDGLSKK--- 110 (198)
T ss_pred cCceeeeEecCCcccHHHHHHHHhHHh----ccCccccCC------CcHHHHHHHHh------HheeHHHHhhcchh---
Confidence 334579999999999999999997662 111111111 11112222221 38999999987411
Q ss_pred CCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEeccCCCCccc-HHHHhhccceEEcCC
Q 042771 244 GNESEASRRIKTELLVQMQGVG--------HNDQKVLVLAATNTPYALD-QAIRRRFDKRIYIPL 299 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~~~l~-~~l~~Rf~~~i~~~~ 299 (436)
....+++.+-...+.+. .-+...++|+|||..+-|. +.=-||| ..+.+..
T Consensus 111 -----~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 111 -----DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred -----hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 12333332222222211 1123567899999876443 3334577 4555543
No 407
>PRK08233 hypothetical protein; Provisional
Probab=97.34 E-value=0.0019 Score=56.73 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=26.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC-CceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD-STFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~-~~~~~v~~ 199 (436)
.-|.|.|+||+||||+|+.++..++ ..++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44444443
No 408
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.34 E-value=0.00018 Score=63.97 Aligned_cols=29 Identities=38% Similarity=0.604 Sum_probs=25.6
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
|+|.||||+||||+++.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999998666543
No 409
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.33 E-value=0.0022 Score=56.69 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.5
Q ss_pred eEEecCCcchHHHHHHHHHH
Q 042771 169 FLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~ 188 (436)
++|+||.|+|||++++.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 410
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.32 E-value=0.001 Score=62.96 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=28.8
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc----C-CceEEEeccc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA----D-STFFSISSSD 201 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l----~-~~~~~v~~~~ 201 (436)
.+..++|+||+|+||||++..+|..+ + ..+..+++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 34679999999999999999998765 3 4566666544
No 411
>PLN02840 tRNA dimethylallyltransferase
Probab=97.32 E-value=0.00065 Score=66.95 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=30.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..++|.||+|+|||+|+..+|..++..++.++..
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 4699999999999999999999999888777653
No 412
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.32 E-value=0.0022 Score=64.13 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=27.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc-----CCceEEEeccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSSD 201 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~~~ 201 (436)
...++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4579999999999999999887654 34566666554
No 413
>PRK06547 hypothetical protein; Provisional
Probab=97.32 E-value=0.00023 Score=62.03 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=29.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.++.-|++.|++|||||++++.+++.++..++..+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 33467889999999999999999999987776544
No 414
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.32 E-value=0.0016 Score=56.95 Aligned_cols=73 Identities=16% Similarity=0.140 Sum_probs=41.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc--eEEEeccch--hhhhh-chHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST--FFSISSSDL--VSKWM-GESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~--~~~v~~~~l--~~~~~-g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.+...+.|.||.|+|||||++.++...... -+.++...+ ..... -.....-+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 344678999999999999999999865211 111221110 00000 01111222334445556789999999764
No 415
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=97.31 E-value=0.00081 Score=68.41 Aligned_cols=96 Identities=14% Similarity=0.229 Sum_probs=61.5
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEe-ccchh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSIS-SSDLV 203 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~-~~~l~ 203 (436)
...+++++.-.++..+.+..++..+ ..-++++||+|+||||+.+++.+.++ .+++.+. +.++.
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~-------------~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~ 283 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRP-------------HGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ 283 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcC-------------CCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee
Confidence 4457888877778788887766332 13478999999999999999888764 3344442 22221
Q ss_pred hhhh-----c-hHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 204 SKWM-----G-ESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 204 ~~~~-----g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
-... . ............+....|.||+|.|+-.
T Consensus 284 ~~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiRd 322 (486)
T TIGR02533 284 IEGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIRD 322 (486)
T ss_pred cCCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1100 0 1112234555666778999999999964
No 416
>PF13245 AAA_19: Part of AAA domain
Probab=97.31 E-value=0.00035 Score=51.90 Aligned_cols=33 Identities=33% Similarity=0.624 Sum_probs=22.4
Q ss_pred ceEEecCCcchHH-HHHHHHHHHc------CCceEEEecc
Q 042771 168 AFLLYGPPGTGKS-YLAKAVATEA------DSTFFSISSS 200 (436)
Q Consensus 168 ~iLl~GppGtGKT-~la~aia~~l------~~~~~~v~~~ 200 (436)
-+++.|||||||| ++++.++... +..++.+...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 4566999999999 5556666555 4456666543
No 417
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.30 E-value=0.0017 Score=60.95 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=28.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
.+++.++|+||+|+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345788899999999999999998766 5555555544
No 418
>PRK13764 ATPase; Provisional
Probab=97.30 E-value=0.00046 Score=71.22 Aligned_cols=70 Identities=23% Similarity=0.315 Sum_probs=41.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC---ceEEEe-ccchh-----hhhhchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS---TFFSIS-SSDLV-----SKWMGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~-~~~l~-----~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
..++|++||||+||||++++++..+.. .+..+. +.++. ..+. ............+....|.+|++||+-.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 367999999999999999999988742 222321 11221 1110 0000112222333456899999999863
No 419
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.30 E-value=0.00028 Score=61.59 Aligned_cols=33 Identities=30% Similarity=0.628 Sum_probs=29.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 579999999999999999999999988877664
No 420
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.29 E-value=0.00024 Score=64.85 Aligned_cols=32 Identities=22% Similarity=0.549 Sum_probs=27.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|+|.||||+||||+++.+|+.++.+++.+.
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 35999999999999999999999987666554
No 421
>PLN02200 adenylate kinase family protein
Probab=97.27 E-value=0.0003 Score=64.64 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=30.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
.+..++|.|||||||||+++.+|+.+|.. .+++.++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR 79 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLR 79 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHH
Confidence 34678999999999999999999999864 466666543
No 422
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.27 E-value=0.0076 Score=57.91 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=28.2
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45789999999999999999999876 4455555543
No 423
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.27 E-value=0.0056 Score=60.36 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=26.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSD 201 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~ 201 (436)
+..++|.||+|+||||++..+|... |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568999999999999999999754 44455555443
No 424
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.27 E-value=0.0002 Score=61.02 Aligned_cols=30 Identities=23% Similarity=0.457 Sum_probs=27.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.++++|.|||||||+++.++ ++|...+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 9998877765
No 425
>PRK10436 hypothetical protein; Provisional
Probab=97.26 E-value=0.00089 Score=67.45 Aligned_cols=98 Identities=13% Similarity=0.248 Sum_probs=63.5
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---ceEEEe-ccc
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---TFFSIS-SSD 201 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~-~~~ 201 (436)
.....+++++.-.+...+.+..++.. +...+|++||+|+||||+..++..+++. +++.+. +.+
T Consensus 191 ~~~~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE 257 (462)
T PRK10436 191 VQQALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVE 257 (462)
T ss_pred ccCCCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCcc
Confidence 33345788888777778888776643 2246899999999999999988877643 344432 222
Q ss_pred hhhhh-----hc-hHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 202 LVSKW-----MG-ESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 202 l~~~~-----~g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
+.-.. ++ ............+....|.||+|.|+-.
T Consensus 258 ~~l~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIRD 298 (462)
T PRK10436 258 IPLAGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIRD 298 (462)
T ss_pred ccCCCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCCC
Confidence 21110 11 1112345566667778999999999963
No 426
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.26 E-value=0.00029 Score=61.42 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=28.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..++|+|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 36899999999999999999999999887654
No 427
>PRK13946 shikimate kinase; Provisional
Probab=97.25 E-value=0.00025 Score=62.67 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=30.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
..|+|.|++|||||++++.+|+.+|.+|+..+.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 679999999999999999999999999887663
No 428
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.25 E-value=0.0013 Score=64.53 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=21.6
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
-+++.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 429
>PRK14528 adenylate kinase; Provisional
Probab=97.24 E-value=0.00029 Score=62.43 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=27.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..+++.||||+||||+++.+++.++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998776554
No 430
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.24 E-value=0.0021 Score=68.24 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=50.6
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHH---cCCceEEEeccchhh-h---------------hhchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDLVS-K---------------WMGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l~~-~---------------~~g~~~~~~~~~~~~a~ 222 (436)
+..+...++|+||||||||+|+..++.. .+..+++++..+-.. . .....+..+..+-..++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4555678999999999999999765543 356666666443211 0 01112333333334445
Q ss_pred hcCCeEEEEcccccccc
Q 042771 223 ESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~ 239 (436)
...+.+|+||-+..|.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 56789999999999886
No 431
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.22 E-value=0.0044 Score=54.23 Aligned_cols=26 Identities=23% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHH
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~ 188 (436)
..+..-+.|.||.|+|||||.+++..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 34556789999999999999999964
No 432
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.21 E-value=0.00032 Score=62.02 Aligned_cols=30 Identities=23% Similarity=0.460 Sum_probs=25.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.-++|.||||+||||+++.+++.+|...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358899999999999999999998755443
No 433
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.21 E-value=0.0024 Score=53.98 Aligned_cols=71 Identities=23% Similarity=0.316 Sum_probs=41.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc--eEEEecc---chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST--FFSISSS---DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~--~~~v~~~---~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.+...+.|.||+|+|||||+++++...... -+.++.. .+...+.+. ..-+-.+..+-...|.++++||-..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G--~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGG--EKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHH--HHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 455678999999999999999999875211 1111110 000001111 1122234445556888999999764
No 434
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.19 E-value=0.0025 Score=61.49 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
++.....-++|+||||||||+++..+|... +..+++++..+
T Consensus 97 GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 97 GGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 345556778999999999999999998653 34677777554
No 435
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.19 E-value=0.0041 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.4
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
+..+++||.|+|||++.++++-.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998643
No 436
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.19 E-value=0.0019 Score=57.42 Aligned_cols=76 Identities=28% Similarity=0.392 Sum_probs=43.8
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc-------------CCceEEEeccchhh----h-------h--------hc----
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA-------------DSTFFSISSSDLVS----K-------W--------MG---- 208 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l-------------~~~~~~v~~~~l~~----~-------~--------~g---- 208 (436)
...-.+|+||||+|||+++..++..+ +..+++++...-.. . + ..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~~~ 110 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLSNW 110 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH--E
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecccc
Confidence 33569999999999999999998754 23566665432110 0 0 00
Q ss_pred -------------hHHHHHHHHHHHHHh-cCCeEEEEccccccccC
Q 042771 209 -------------ESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 209 -------------~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~ 240 (436)
.....+..+...+.. ..+.+|+||-+..+...
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 111 GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 012234455666666 57889999999999866
No 437
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.18 E-value=0.0028 Score=55.77 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=23.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||+|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 455679999999999999999999865
No 438
>PRK02496 adk adenylate kinase; Provisional
Probab=97.18 E-value=0.00032 Score=61.94 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=26.3
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.++|.||||+||||+++.++..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998766544
No 439
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.18 E-value=0.0026 Score=54.51 Aligned_cols=73 Identities=27% Similarity=0.348 Sum_probs=42.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc--eEEEeccchhh-------hhhc----hH-HHHHHHHHHHHHhcCCeEE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST--FFSISSSDLVS-------KWMG----ES-EKLVSSLFQMARESAPSII 229 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~--~~~v~~~~l~~-------~~~g----~~-~~~~~~~~~~a~~~~p~il 229 (436)
.+...+.|.||+|+|||+|+++++..+... -+.++...+.. ...+ -+ ...-+-.+..+-...|.++
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ 102 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLL 102 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEE
Confidence 444679999999999999999999876321 12333222110 0000 01 1112222444445578899
Q ss_pred EEccccc
Q 042771 230 FIDEIDS 236 (436)
Q Consensus 230 ~iDeid~ 236 (436)
++||...
T Consensus 103 ilDEp~~ 109 (157)
T cd00267 103 LLDEPTS 109 (157)
T ss_pred EEeCCCc
Confidence 9999874
No 440
>PRK04040 adenylate kinase; Provisional
Probab=97.18 E-value=0.00038 Score=61.64 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=24.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--CCce
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--DSTF 194 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--~~~~ 194 (436)
..++|+|+|||||||+++.+++.+ +..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 568999999999999999999999 4444
No 441
>PRK06696 uridine kinase; Validated
Probab=97.18 E-value=0.00082 Score=61.36 Aligned_cols=38 Identities=21% Similarity=0.213 Sum_probs=31.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchh
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLV 203 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~ 203 (436)
+.-|.+.|++|+||||+|+.++..+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4679999999999999999999998 6677777766653
No 442
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.18 E-value=0.0018 Score=69.29 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=53.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---C--CceEEEeccchhh----hhhchHHHHHHHHHHHHH----------hcCCe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---D--STFFSISSSDLVS----KWMGESEKLVSSLFQMAR----------ESAPS 227 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~--~~~~~v~~~~l~~----~~~g~~~~~~~~~~~~a~----------~~~p~ 227 (436)
+-++|.|+||||||++++++...+ + ..++.+.++.-.. ...|.....+..++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 469999999999999999997654 3 3444333321111 111111222333332110 12356
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 281 (436)
+|+|||+..+ ....+..|+..+. ...++++++=.+...
T Consensus 419 llIvDEaSMv------------d~~~~~~Ll~~~~----~~~rlilvGD~~QLp 456 (720)
T TIGR01448 419 LLIVDESSMM------------DTWLALSLLAALP----DHARLLLVGDTDQLP 456 (720)
T ss_pred EEEEeccccC------------CHHHHHHHHHhCC----CCCEEEEECcccccc
Confidence 9999999876 2233445554332 334566666554443
No 443
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.17 E-value=0.0014 Score=58.70 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=32.4
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc-CCceEEEeccchhhh
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSK 205 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~~~~l~~~ 205 (436)
..|.-+++.|+||+|||+++..+...+ +..++.+++.++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 345779999999999999999999998 788899988877544
No 444
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=97.17 E-value=0.00031 Score=68.04 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=47.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEe-ccchhhh--------h----hchHHHHHHHHHHHHHhcCCeE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSIS-SSDLVSK--------W----MGESEKLVSSLFQMARESAPSI 228 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~-~~~l~~~--------~----~g~~~~~~~~~~~~a~~~~p~i 228 (436)
....++++.||+|+||||++++++..+.. .++.+. ..++.-. + .+...-....++..+....|..
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~ 239 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDR 239 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCe
Confidence 34478999999999999999999988643 223221 1111100 0 0111223456777788889999
Q ss_pred EEEcccc
Q 042771 229 IFIDEID 235 (436)
Q Consensus 229 l~iDeid 235 (436)
|++.|+-
T Consensus 240 IivGEiR 246 (344)
T PRK13851 240 ILLGEMR 246 (344)
T ss_pred EEEEeeC
Confidence 9999986
No 445
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.16 E-value=0.0028 Score=60.80 Aligned_cols=42 Identities=14% Similarity=0.226 Sum_probs=31.1
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHH---------cCCceEEEeccc
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATE---------ADSTFFSISSSD 201 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~---------l~~~~~~v~~~~ 201 (436)
.++.....-+.|+||||+|||+++..+|-. .+..+++++...
T Consensus 90 gGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 90 GGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 345566677899999999999999987742 245677777544
No 446
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.16 E-value=0.00035 Score=63.16 Aligned_cols=29 Identities=38% Similarity=0.626 Sum_probs=25.6
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
|+|.||||+||||+|+.+|..++...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999999998666553
No 447
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.15 E-value=0.0041 Score=54.61 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccc------------eE
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDK------------RI 295 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~------------~i 295 (436)
.++|+++|.| .....+.||+.++ +++.++++|..|..+..+.+.++|||.. .+
T Consensus 57 k~iI~~a~~l------------~~~A~NaLLK~LE---EPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l 121 (206)
T PRK08485 57 KIIVIAAPSY------------GIEAQNALLKILE---EPPKNICFIIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDL 121 (206)
T ss_pred EEEEEchHhh------------CHHHHHHHHHHhc---CCCCCeEEEEEeCChHhCchHHHhhheecccccccccccccc
Confidence 4567889987 3445788999998 4677888888999999999999999964 46
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 296 YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
.+...+.++....+.. +.........+....|+....|
T Consensus 122 ~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~ 159 (206)
T PRK08485 122 DLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKE 159 (206)
T ss_pred ccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHH
Confidence 6778888888888887 4444443345555556666554
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.15 E-value=0.00066 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=20.7
Q ss_pred eEEecCCcchHHHHHHHHHHHc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l 190 (436)
+.+.|+||+|||++++++++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 449
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.15 E-value=0.0038 Score=60.46 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=30.7
Q ss_pred cCCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 160 TGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 160 ~~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
.++.....-..|+||||||||.|+..+|-.. +..+++++...
T Consensus 120 gGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 120 GGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 3455666778899999999999999886422 35677776543
No 450
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.14 E-value=0.0018 Score=56.47 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=26.3
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
+++.||||+|||+++..++..+ +..+..+++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 7899999999999999998875 5566666654
No 451
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.13 E-value=0.0015 Score=63.81 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=24.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.++..++|+||||+|||+|++.+++.+.
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 3445699999999999999999999853
No 452
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.13 E-value=0.0014 Score=62.81 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=45.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC-----CceEEEe-ccchhhh------hhchHHHHHHHHHHHHHhcCCeEEEEccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD-----STFFSIS-SSDLVSK------WMGESEKLVSSLFQMARESAPSIIFIDEI 234 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~-----~~~~~v~-~~~l~~~------~~g~~~~~~~~~~~~a~~~~p~il~iDei 234 (436)
.++|+.|++|+||||++++++..+. ..++.+. ..++... +.....-....++..+....|..|++.|+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGEi 224 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGEV 224 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEeec
Confidence 5899999999999999999998762 2333332 2222110 00111123556777778889999999998
Q ss_pred c
Q 042771 235 D 235 (436)
Q Consensus 235 d 235 (436)
-
T Consensus 225 R 225 (323)
T PRK13833 225 R 225 (323)
T ss_pred C
Confidence 5
No 453
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.13 E-value=0.0017 Score=55.23 Aligned_cols=39 Identities=23% Similarity=0.364 Sum_probs=32.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK 205 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~ 205 (436)
..|.|+|.||+||||||+++.+.+ +.+++.++...+...
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~ 44 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHG 44 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhc
Confidence 468999999999999999999876 788999988776543
No 454
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.13 E-value=0.00042 Score=62.87 Aligned_cols=30 Identities=37% Similarity=0.584 Sum_probs=26.3
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+++||||+||||+++.+|..++...+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 389999999999999999999998666554
No 455
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.10 E-value=0.0037 Score=60.16 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=31.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
++.....-++|+||||+|||+++-.+|... +..+++++..+
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 344555678999999999999999998663 33677777654
No 456
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=97.10 E-value=0.0013 Score=68.30 Aligned_cols=98 Identities=15% Similarity=0.205 Sum_probs=63.6
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---ceEEEe-ccc
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS---TFFSIS-SSD 201 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~---~~~~v~-~~~ 201 (436)
..+..+++++.-.+...+.+.+++.. +...+|++||+|+||||+..++.+.++. +++.+. +.+
T Consensus 289 ~~~~~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE 355 (564)
T TIGR02538 289 SAAQLDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVE 355 (564)
T ss_pred ccccCCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCce
Confidence 33446788888888888888776643 2245889999999999999998888743 344332 111
Q ss_pred hhhhh-----hc-hHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 202 LVSKW-----MG-ESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 202 l~~~~-----~g-~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
+.-.. +. .........+..+....|.||++.|+-.
T Consensus 356 ~~~~~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiRd 396 (564)
T TIGR02538 356 INLPGINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIRD 396 (564)
T ss_pred ecCCCceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCCC
Confidence 11000 00 1112345566677778999999999974
No 457
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.10 E-value=0.0019 Score=55.25 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=34.9
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS 204 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~ 204 (436)
..+..+.|+|.+|+||||+|.++.+.| |.+++.++..++..
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~ 64 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRH 64 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhh
Confidence 444679999999999999999999876 88999998877643
No 458
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.10 E-value=0.0024 Score=62.39 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=42.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC------CceEEEe-ccchhhhh------------hchHHHHHHHHHHHHHhcCCe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD------STFFSIS-SSDLVSKW------------MGESEKLVSSLFQMARESAPS 227 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~------~~~~~v~-~~~l~~~~------------~g~~~~~~~~~~~~a~~~~p~ 227 (436)
..++++||+|+||||+++++++.+. ..++.+. +.++.-.. .+............+....|.
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR~~Pd 214 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFVYDEIETISASVCQSEIPRHLNNFAAGVRNALRRKPH 214 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEeccccccccceeeeeeccccccCHHHHHHHHhccCCC
Confidence 5799999999999999999998762 2333321 11111000 000011234445556677999
Q ss_pred EEEEcccc
Q 042771 228 IIFIDEID 235 (436)
Q Consensus 228 il~iDeid 235 (436)
++++.|+-
T Consensus 215 ~i~vGEiR 222 (358)
T TIGR02524 215 AILVGEAR 222 (358)
T ss_pred EEeeeeeC
Confidence 99999976
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.09 E-value=0.00039 Score=57.17 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.9
Q ss_pred eEEecCCcchHHHHHHHHHHHc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l 190 (436)
|+|.|+|||||||+|+.+++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.09 E-value=0.0055 Score=62.69 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=52.2
Q ss_pred hcCCCCCCcceEEecCCcchHHHHHHHHHHH----cCCceEEEeccchhhhh--------------h-------------
Q 042771 159 FTGKRQPWRAFLLYGPPGTGKSYLAKAVATE----ADSTFFSISSSDLVSKW--------------M------------- 207 (436)
Q Consensus 159 ~~~~~~~~~~iLl~GppGtGKT~la~aia~~----l~~~~~~v~~~~l~~~~--------------~------------- 207 (436)
+.++..+.+.+|+.||||||||+++..++.+ .|.+.++++..+-...+ .
T Consensus 14 l~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~~~~~~~ 93 (484)
T TIGR02655 14 SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFILDASPD 93 (484)
T ss_pred cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEEEecCch
Confidence 3446667789999999999999999988543 25676666543211100 0
Q ss_pred ---------chHHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 208 ---------GESEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 208 ---------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
-.....+..+........+..|+||=+..+.
T Consensus 94 ~~~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl~aL~ 133 (484)
T TIGR02655 94 PEGQDVVGGFDLSALIERINYAIRKYKAKRVSIDSVTAVF 133 (484)
T ss_pred hccccccccCCHHHHHHHHHHHHHHhCCcEEEEeehhHhh
Confidence 0123345556666677778899999776654
No 461
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.08 E-value=0.002 Score=56.64 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=24.1
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
|.|+|++|+||||+++.+++ +|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 68999999999999999998 77666544
No 462
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.08 E-value=0.00069 Score=57.75 Aligned_cols=33 Identities=39% Similarity=0.626 Sum_probs=26.3
Q ss_pred EecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 171 LYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 171 l~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
|.||||+||||+++.+|+.++. ..++..++...
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~ 33 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLRE 33 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHH
Confidence 6899999999999999999975 55665555443
No 463
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.07 E-value=0.0018 Score=60.67 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=35.9
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh---hh-hchHHHHHHHH----HHHHHhcCCeEEEEcccccc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS---KW-MGESEKLVSSL----FQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~---~~-~g~~~~~~~~~----~~~a~~~~p~il~iDeid~l 237 (436)
|+|+|-||+|||++|+.++..+ +..++.++...+.- .| ....++.++.. +..+.. ...||++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls-~~~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS-KDTIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT-T-SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc-cCeEEEEeCCchH
Confidence 8999999999999999999875 56677776444431 11 12234444433 333322 2369999998876
No 464
>PRK14527 adenylate kinase; Provisional
Probab=97.07 E-value=0.00046 Score=61.40 Aligned_cols=32 Identities=31% Similarity=0.499 Sum_probs=27.1
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+.-+++.||||+||||+++.+++.++...+..
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~ 37 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLST 37 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc
Confidence 35699999999999999999999998655443
No 465
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.06 E-value=0.0015 Score=62.74 Aligned_cols=70 Identities=21% Similarity=0.424 Sum_probs=45.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe-ccchhh---h---hhchHHHHHHHHHHHHHhcCCeEEEEcc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS-SSDLVS---K---WMGESEKLVSSLFQMARESAPSIIFIDE 233 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~-~~~l~~---~---~~g~~~~~~~~~~~~a~~~~p~il~iDe 233 (436)
..++++.|++|+||||++++++... ...++.+. ..++.- . +.......+..++..+....|..|++.|
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivGE 227 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVGE 227 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEec
Confidence 3689999999999999999999873 12233221 112110 0 0001122356777788888999999999
Q ss_pred cc
Q 042771 234 ID 235 (436)
Q Consensus 234 id 235 (436)
+-
T Consensus 228 iR 229 (319)
T PRK13894 228 VR 229 (319)
T ss_pred cC
Confidence 86
No 466
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.032 Score=54.13 Aligned_cols=53 Identities=13% Similarity=-0.033 Sum_probs=37.4
Q ss_pred hccceEEcCCCCHHHHHHHHHHHhCCCCC---CCChhhHHHHHHHcCCCCHHHHHHHH
Q 042771 290 RFDKRIYIPLPDLKARQHMFKVHLGDTPH---NLTESDFESLARKTEGFSGSDISVCV 344 (436)
Q Consensus 290 Rf~~~i~~~~p~~~~r~~il~~~l~~~~~---~~~~~~~~~la~~t~g~s~~dl~~l~ 344 (436)
-| ..|+++.++.+|-..++..++...-+ ...++.++.+--++ +.+++-++.+|
T Consensus 402 pf-~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLS-ngNP~l~~~lc 457 (461)
T KOG3928|consen 402 PF-VPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLS-NGNPSLMERLC 457 (461)
T ss_pred Cc-CccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhc-CCCHHHHHHHH
Confidence 45 35888999999999999888764321 12366677777777 55787777766
No 467
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.05 E-value=0.00084 Score=64.44 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=31.8
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..+...|+|.|++|||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 455678999999999999999999999999999544
No 468
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.05 E-value=0.0017 Score=62.08 Aligned_cols=35 Identities=31% Similarity=0.521 Sum_probs=26.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
.-++|.|+|||||||+|+.+++.+. .++.++...+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4588999999999999999999983 2344444433
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.04 E-value=0.0081 Score=55.42 Aligned_cols=21 Identities=43% Similarity=0.450 Sum_probs=19.0
Q ss_pred eEEecCCcchHHHHHHHHHHH
Q 042771 169 FLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~ 189 (436)
-+|+||||+|||+|+..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999864
No 470
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.0021 Score=58.31 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+.--+-|.||+|||||||.+.+|.-.
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334468999999999999999999754
No 471
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.03 E-value=0.00067 Score=63.96 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=32.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
.-++|+||++||||.|+-.+|+.++..++.++.-.+
T Consensus 4 ~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 4 KLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred cEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 569999999999999999999999999999885443
No 472
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.02 E-value=0.042 Score=54.36 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=40.6
Q ss_pred cCCCCccccc-cCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 126 EKPNVKWNDV-AGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 126 ~~~~~~~~dl-~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|...++.+ ||.+...+.|...+... . ......-++.|.-|+|||++.+.+...
T Consensus 17 vVP~~Gl~~~~VGr~~e~~~l~~~l~~v-------~--~G~s~~kfi~G~YGsGKTf~l~~i~~~ 72 (416)
T PF10923_consen 17 VVPRIGLDHIAVGREREIEALDRDLDRV-------A--DGGSSFKFIRGEYGSGKTFFLRLIRER 72 (416)
T ss_pred CCCcccCcceeechHHHHHHHHHHHHHH-------h--CCCCeEEEEEeCCCCcHHHHHHHHHHH
Confidence 4667777776 89998888888766431 1 123356888999999999999988654
No 473
>PRK13808 adenylate kinase; Provisional
Probab=97.02 E-value=0.0032 Score=60.41 Aligned_cols=30 Identities=30% Similarity=0.533 Sum_probs=26.3
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|+||||+||||+++.|+..++..++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999998765554
No 474
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.02 E-value=0.00075 Score=61.60 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=17.7
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
-.+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 38999999999998777776655
No 475
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.02 E-value=0.0059 Score=63.00 Aligned_cols=79 Identities=23% Similarity=0.220 Sum_probs=52.0
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh----------------------------hch
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----------------------------MGE 209 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----------------------------~g~ 209 (436)
++......++|+||||+|||+++..++.+. |.++++++..+-.... ...
T Consensus 268 GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 347 (509)
T PRK09302 268 GGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYG 347 (509)
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCC
Confidence 455566789999999999999999988653 6667766543211100 001
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 210 SEKLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 210 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
....+..+........+.+|+||-+..+..
T Consensus 348 ~~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 348 LEDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 123344555555666788999999988754
No 476
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.02 E-value=0.0011 Score=59.12 Aligned_cols=24 Identities=46% Similarity=0.724 Sum_probs=19.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.-+++.||.|||||+||-+.|-++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 368999999999999999998764
No 477
>PLN02674 adenylate kinase
Probab=97.01 E-value=0.00066 Score=62.35 Aligned_cols=36 Identities=25% Similarity=0.506 Sum_probs=28.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
...++|.||||+||+|+++.+|+.++... ++..++.
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~h--is~Gdll 66 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCH--LATGDML 66 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcE--EchhHHH
Confidence 35799999999999999999999998554 4444443
No 478
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.00 E-value=0.012 Score=58.60 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=46.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh---------------hh-----chHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK---------------WM-----GESEKLVSSLFQM 220 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~---------------~~-----g~~~~~~~~~~~~ 220 (436)
.++..++|+|++|+||||++..+|..+ |..+..+++..+... +. ..........+..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~ 177 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEK 177 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHH
Confidence 345789999999999999999999876 666666665432210 00 0112223334455
Q ss_pred HHhcCCeEEEEcccccc
Q 042771 221 ARESAPSIIFIDEIDSL 237 (436)
Q Consensus 221 a~~~~p~il~iDeid~l 237 (436)
++.....+||||=...+
T Consensus 178 ~~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 178 FKKENFDIIIVDTSGRH 194 (429)
T ss_pred HHhCCCCEEEEECCCCC
Confidence 55545579999976543
No 479
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.99 E-value=0.0027 Score=57.36 Aligned_cols=28 Identities=29% Similarity=0.497 Sum_probs=24.4
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+.-+..|+||.|+|||||++.++.+.
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~ 81 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEH 81 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhccc
Confidence 4566789999999999999999998764
No 480
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.99 E-value=0.0069 Score=62.52 Aligned_cols=78 Identities=18% Similarity=0.200 Sum_probs=51.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhh--------------hh----------------
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSK--------------WM---------------- 207 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~--------------~~---------------- 207 (436)
+..+...+||+|+||+|||+++..++.+. |.++++++..+-... +.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 45566789999999999999999886542 556666654322110 00
Q ss_pred ------chHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 208 ------GESEKLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 208 ------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
...+..+..+...+...++..|+||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01133344555566667889999999987643
No 481
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.012 Score=59.74 Aligned_cols=26 Identities=27% Similarity=0.350 Sum_probs=22.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
....+.|+||+|+||||++..++..+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34679999999999999999998754
No 482
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.97 E-value=0.0081 Score=53.01 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=23.8
Q ss_pred eEEecCCcchHHHHHHHHHHHc-CCceEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA-DSTFFSI 197 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l-~~~~~~v 197 (436)
|.+.|+|||||||+|+.++..+ +..++.+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~ 31 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQ 31 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEcc
Confidence 6789999999999999999998 4444433
No 483
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.97 E-value=0.0038 Score=54.60 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=29.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
+..+.|.|+||+||||+++.++..+ +..+..++...+
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 4579999999999999999999987 445666665443
No 484
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.97 E-value=0.00076 Score=55.78 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=26.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
.+...++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344579999999999999999999999864
No 485
>PRK01184 hypothetical protein; Provisional
Probab=96.97 E-value=0.00071 Score=59.75 Aligned_cols=29 Identities=28% Similarity=0.444 Sum_probs=24.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
-|+|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999987 788888777654
No 486
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.97 E-value=0.0027 Score=68.13 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=41.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh----chHHHHHHHHHHH-HH----hcCCeEEEEccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM----GESEKLVSSLFQM-AR----ESAPSIIFIDEI 234 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~----g~~~~~~~~~~~~-a~----~~~p~il~iDei 234 (436)
+-++|.|+||||||++++++...+ |..++.+.++.....-. |.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 357899999999999999997653 56666654443221111 1111112222111 11 124469999999
Q ss_pred ccc
Q 042771 235 DSL 237 (436)
Q Consensus 235 d~l 237 (436)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 876
No 487
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.96 E-value=0.0024 Score=61.28 Aligned_cols=87 Identities=21% Similarity=0.254 Sum_probs=54.3
Q ss_pred CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHH
Q 042771 137 GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSS 216 (436)
Q Consensus 137 G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~ 216 (436)
|.++++..|.+++.+.+.. ......-++|+|+.|+|||++++.+..-+|.....+..+....... ..
T Consensus 53 ~d~~~~~~l~~~lg~~L~~------~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~~-~~------ 119 (304)
T TIGR01613 53 GDNELIEYLQRVIGYSLTG------NYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEFQ-EH------ 119 (304)
T ss_pred CCHHHHHHHHHHHhHHhcC------CCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhcc-CC------
Confidence 3556788888887665442 1233467999999999999999999988886554333322222111 10
Q ss_pred HHHHHHhcCCeEEEEccccc
Q 042771 217 LFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 217 ~~~~a~~~~p~il~iDeid~ 236 (436)
-|..+.-....+++.||++.
T Consensus 120 ~f~~a~l~gk~l~~~~E~~~ 139 (304)
T TIGR01613 120 RFGLARLEGKRAVIGDEVQK 139 (304)
T ss_pred CchhhhhcCCEEEEecCCCC
Confidence 13333333445889999863
No 488
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.96 E-value=0.0044 Score=63.61 Aligned_cols=27 Identities=33% Similarity=0.508 Sum_probs=24.3
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+++..+|+.||+|||||+|.|++|.-
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 456678999999999999999999975
No 489
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.96 E-value=0.0074 Score=52.57 Aligned_cols=28 Identities=32% Similarity=0.433 Sum_probs=24.3
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+...+.|.||+|+|||||++.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455689999999999999999999875
No 490
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.96 E-value=0.032 Score=47.47 Aligned_cols=61 Identities=13% Similarity=0.306 Sum_probs=41.0
Q ss_pred ecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 172 YGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 172 ~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
.+.+||||||++.++++-++- +-.+.-.++.++ .....+..+.+........+||+|=-+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh 65 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNH 65 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCc
Confidence 578999999999999999873 333444455443 3445566666666444445888885443
No 491
>PRK14526 adenylate kinase; Provisional
Probab=96.95 E-value=0.00077 Score=60.83 Aligned_cols=29 Identities=34% Similarity=0.673 Sum_probs=25.3
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.++|.||||+||||+++.+|..++..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is 30 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHIS 30 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 48899999999999999999998866544
No 492
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.95 E-value=0.0034 Score=61.73 Aligned_cols=27 Identities=41% Similarity=0.611 Sum_probs=23.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+..+++.||.|||||++.+++...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 346899999999999999999988773
No 493
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.95 E-value=0.00075 Score=58.31 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=21.0
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
|.|+|+||||||||++.+++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999998 777663
No 494
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.94 E-value=0.0021 Score=62.02 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=30.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
..++|.|++|+|||||++.+++.++.+++.-...++
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~ 198 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREY 198 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHH
Confidence 479999999999999999999999988765544433
No 495
>PTZ00035 Rad51 protein; Provisional
Probab=96.93 E-value=0.0069 Score=58.75 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=30.2
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
++.....-+.|+||||+|||+|+..++... +..+++++...
T Consensus 113 GGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 113 GGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 455666778999999999999999887532 34566666543
No 496
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.93 E-value=0.014 Score=51.31 Aligned_cols=116 Identities=13% Similarity=0.112 Sum_probs=64.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEec-------cch--hh--------------hhh----chHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS-------SDL--VS--------------KWM----GESEKLVSS 216 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~-------~~l--~~--------------~~~----g~~~~~~~~ 216 (436)
..+++||++|.||||+|-.+|-.. |..+..+.. .+. .. .|. .+.....+.
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 579999999999999999997653 333332210 000 00 000 112233444
Q ss_pred HHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhcc
Q 042771 217 LFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFD 292 (436)
Q Consensus 217 ~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~ 292 (436)
.|..++. ....+|++|||-......--+ ...++..++. .+..+=||.|-+ ..++.|+.+.|
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~---------~eevi~~L~~---rp~~~evVlTGR---~~p~~Lie~AD 167 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLD---------VEEVLEALNA---RPGMQHVVITGR---GAPRELIEAAD 167 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCcc---------HHHHHHHHHc---CCCCCEEEEECC---CCCHHHHHhCc
Confidence 5555543 467899999997654322110 2344445543 344455666665 34666777666
Q ss_pred ceEEc
Q 042771 293 KRIYI 297 (436)
Q Consensus 293 ~~i~~ 297 (436)
.+-++
T Consensus 168 lVTEm 172 (191)
T PRK05986 168 LVTEM 172 (191)
T ss_pred hheec
Confidence 55544
No 497
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=96.92 E-value=0.00079 Score=65.50 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=37.5
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
++++|..-.+.++++|.+-. .++|+.||||.||||+|+++|..+.
T Consensus 244 ~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy~ 288 (604)
T COG1855 244 LSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFYA 288 (604)
T ss_pred echhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHHH
Confidence 45677777888888887632 6899999999999999999999863
No 498
>PRK04182 cytidylate kinase; Provisional
Probab=96.92 E-value=0.00085 Score=58.81 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=26.4
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.|+|.|++|||||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 48899999999999999999999987765
No 499
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.92 E-value=0.00087 Score=63.05 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=28.7
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
+++.||+|+|||+|+..+|+.++..++.++.-
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~ 33 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM 33 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence 78999999999999999999999888777653
No 500
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.92 E-value=0.0051 Score=67.30 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=54.3
Q ss_pred ceEEecCCcchHHHHHHHHHHH---cCCceEEEeccchhhhh----hchHHHHHHHHHHHHH-----hcCCeEEEEcccc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDLVSKW----MGESEKLVSSLFQMAR-----ESAPSIIFIDEID 235 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l~~~~----~g~~~~~~~~~~~~a~-----~~~p~il~iDeid 235 (436)
-++|.|++||||||+++++... .|..++.+-++.....- .|.....+..++.... .....||||||+-
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI~sll~~~~~~~~~l~~~~vlIVDEAS 443 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRDVLVIDEAG 443 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhHHHHHhhhcccccccccCcEEEEECcc
Confidence 4679999999999998877554 46666665544332211 1222233343322111 1234699999998
Q ss_pred ccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 236 SLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 236 ~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.+ ....+..|+.... ....++++|+=++..
T Consensus 444 Mv------------~~~~m~~LL~~a~---~~garvVLVGD~~QL 473 (988)
T PRK13889 444 MV------------GTRQLERVLSHAA---DAGAKVVLVGDPQQL 473 (988)
T ss_pred cC------------CHHHHHHHHHhhh---hCCCEEEEECCHHHc
Confidence 65 2233445554443 223456666655433
Done!