Query 042771
Match_columns 436
No_of_seqs 423 out of 3718
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 16:14:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 100.0 3.2E-65 1.1E-69 512.3 21.6 427 3-436 5-444 (444)
2 1xwi_A SKD1 protein; VPS4B, AA 100.0 6.2E-51 2.1E-55 392.2 28.6 309 123-436 2-322 (322)
3 4b4t_J 26S protease regulatory 100.0 7.5E-51 2.6E-55 394.2 24.0 266 119-428 134-404 (405)
4 2qp9_X Vacuolar protein sortin 100.0 2E-50 7E-55 393.8 26.2 322 110-436 28-354 (355)
5 3eie_A Vacuolar protein sortin 100.0 1.1E-49 3.6E-54 384.4 26.4 311 121-436 6-321 (322)
6 4b4t_I 26S protease regulatory 100.0 1.7E-49 6E-54 385.2 17.6 261 119-423 168-433 (437)
7 4b4t_H 26S protease regulatory 100.0 1.2E-48 4.2E-53 382.9 23.4 264 122-429 198-467 (467)
8 4b4t_L 26S protease subunit RP 100.0 2.4E-48 8.1E-53 382.9 22.3 264 119-426 167-435 (437)
9 4b4t_M 26S protease regulatory 100.0 4.5E-48 1.5E-52 380.6 22.0 256 120-419 168-428 (434)
10 3cf2_A TER ATPase, transitiona 100.0 2E-49 6.8E-54 416.1 11.7 293 124-435 468-765 (806)
11 4b4t_K 26S protease regulatory 100.0 1.8E-47 6E-52 376.2 22.1 262 120-425 159-427 (428)
12 3cf0_A Transitional endoplasmi 100.0 1.1E-41 3.7E-46 325.2 23.4 292 123-433 5-301 (301)
13 3d8b_A Fidgetin-like protein 1 100.0 4.8E-41 1.6E-45 328.2 26.1 292 114-436 65-357 (357)
14 3b9p_A CG5977-PA, isoform A; A 100.0 1.4E-40 4.6E-45 317.3 26.1 289 116-435 4-294 (297)
15 3cf2_A TER ATPase, transitiona 100.0 4.5E-42 1.6E-46 360.4 17.2 279 126-432 197-489 (806)
16 3vfd_A Spastin; ATPase, microt 100.0 9.5E-40 3.2E-44 323.0 26.9 287 118-435 100-387 (389)
17 2x8a_A Nuclear valosin-contain 100.0 1.9E-38 6.5E-43 297.9 21.9 264 126-422 3-273 (274)
18 3h4m_A Proteasome-activating n 100.0 3.2E-35 1.1E-39 278.4 25.3 269 124-436 8-283 (285)
19 3hu3_A Transitional endoplasmi 100.0 1.1E-35 3.9E-40 299.6 23.2 275 128-430 199-487 (489)
20 1ypw_A Transitional endoplasmi 100.0 8.3E-38 2.8E-42 333.8 -2.5 293 124-435 468-765 (806)
21 2ce7_A Cell division protein F 100.0 6.1E-34 2.1E-38 284.6 24.8 244 127-415 10-258 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 2E-33 6.9E-38 262.0 24.5 248 123-415 2-254 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 1.7E-33 5.9E-38 263.0 17.2 245 128-416 1-252 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 9.8E-32 3.4E-36 270.2 23.5 245 127-416 25-274 (499)
25 1ixz_A ATP-dependent metallopr 100.0 6.3E-31 2.1E-35 244.7 23.1 230 123-355 6-240 (254)
26 2r62_A Cell division protease 100.0 4.6E-34 1.6E-38 268.0 0.7 253 125-421 3-261 (268)
27 1iy2_A ATP-dependent metallopr 100.0 8.1E-30 2.8E-34 240.4 25.7 230 123-355 30-264 (278)
28 1ypw_A Transitional endoplasmi 100.0 4.3E-28 1.5E-32 258.9 21.2 228 126-356 197-427 (806)
29 3t15_A Ribulose bisphosphate c 99.9 3E-26 1E-30 217.3 11.4 174 162-342 32-222 (293)
30 3uk6_A RUVB-like 2; hexameric 99.9 8.1E-24 2.8E-28 207.3 18.5 235 128-427 39-345 (368)
31 2c9o_A RUVB-like 1; hexameric 99.9 3.5E-23 1.2E-27 208.2 19.0 232 127-413 31-437 (456)
32 3syl_A Protein CBBX; photosynt 99.9 2.8E-23 9.5E-28 198.5 16.3 213 134-356 32-267 (309)
33 3pfi_A Holliday junction ATP-d 99.9 6.3E-22 2.2E-26 191.6 23.5 203 122-352 18-235 (338)
34 1ofh_A ATP-dependent HSL prote 99.9 1.7E-22 5.8E-27 192.9 17.4 220 133-352 15-274 (310)
35 1hqc_A RUVB; extended AAA-ATPa 99.9 2.8E-21 9.4E-26 185.8 21.7 198 125-351 4-218 (324)
36 1g41_A Heat shock protein HSLU 99.9 8.3E-21 2.9E-25 187.0 21.6 253 133-425 15-442 (444)
37 3pvs_A Replication-associated 99.9 3.5E-21 1.2E-25 192.1 19.0 191 122-350 15-221 (447)
38 3m6a_A ATP-dependent protease 99.9 1.2E-21 4.2E-26 200.5 13.1 209 130-354 78-318 (543)
39 2chg_A Replication factor C sm 99.9 9.2E-20 3.2E-24 164.7 22.0 191 123-348 7-208 (226)
40 3hws_A ATP-dependent CLP prote 99.8 1E-20 3.5E-25 184.9 16.6 222 135-356 17-327 (363)
41 1d2n_A N-ethylmaleimide-sensit 99.8 1.3E-20 4.3E-25 176.8 15.9 209 132-349 32-247 (272)
42 2z4s_A Chromosomal replication 99.8 1.3E-19 4.6E-24 180.9 22.4 203 127-352 99-314 (440)
43 1l8q_A Chromosomal replication 99.8 8.3E-19 2.9E-23 168.6 22.6 199 127-350 5-214 (324)
44 1njg_A DNA polymerase III subu 99.8 3E-19 1E-23 163.5 18.6 193 122-348 12-232 (250)
45 1in4_A RUVB, holliday junction 99.8 1.9E-18 6.7E-23 166.6 25.0 204 122-353 14-232 (334)
46 3pxg_A Negative regulator of g 99.8 4E-20 1.4E-24 186.2 13.5 201 114-351 161-385 (468)
47 1sxj_D Activator 1 41 kDa subu 99.8 3.7E-19 1.3E-23 172.9 19.7 195 121-350 25-241 (353)
48 3u61_B DNA polymerase accessor 99.8 1.3E-19 4.6E-24 174.2 16.3 194 121-348 14-220 (324)
49 2v1u_A Cell division control p 99.8 9.5E-19 3.2E-23 171.9 22.2 207 130-353 16-258 (387)
50 1sxj_A Activator 1 95 kDa subu 99.8 1.2E-19 4.2E-24 185.1 15.3 210 121-348 27-253 (516)
51 4fcw_A Chaperone protein CLPB; 99.8 3E-19 1E-23 170.6 16.9 209 133-356 17-283 (311)
52 1um8_A ATP-dependent CLP prote 99.8 1.5E-19 5E-24 177.5 14.1 223 134-356 22-344 (376)
53 3bos_A Putative DNA replicatio 99.8 1.2E-18 4E-23 159.7 18.8 191 128-352 23-225 (242)
54 2chq_A Replication factor C sm 99.8 5.5E-19 1.9E-23 169.1 16.6 196 122-348 6-208 (319)
55 3pxi_A Negative regulator of g 99.8 4.9E-19 1.7E-23 189.0 17.9 205 133-356 491-729 (758)
56 1iqp_A RFCS; clamp loader, ext 99.8 4E-18 1.4E-22 163.6 22.1 198 121-349 13-217 (327)
57 1r6b_X CLPA protein; AAA+, N-t 99.8 3.5E-19 1.2E-23 190.4 15.7 254 119-431 172-455 (758)
58 2r44_A Uncharacterized protein 99.8 3.7E-18 1.3E-22 164.6 21.0 159 129-315 23-200 (331)
59 1g8p_A Magnesium-chelatase 38 99.8 1E-18 3.5E-23 169.6 16.8 203 126-354 17-305 (350)
60 1sxj_B Activator 1 37 kDa subu 99.8 2.8E-18 9.7E-23 164.4 19.0 192 122-348 10-213 (323)
61 1jbk_A CLPB protein; beta barr 99.8 5.5E-19 1.9E-23 155.8 11.3 166 122-309 11-194 (195)
62 2qby_B CDC6 homolog 3, cell di 99.8 3.6E-18 1.2E-22 167.8 17.5 196 132-351 19-252 (384)
63 1jr3_A DNA polymerase III subu 99.8 5.4E-18 1.9E-22 165.9 18.5 194 122-349 5-226 (373)
64 1r6b_X CLPA protein; AAA+, N-t 99.8 4E-18 1.4E-22 182.2 17.0 207 133-356 458-720 (758)
65 3pxi_A Negative regulator of g 99.8 7.5E-18 2.6E-22 179.9 18.8 200 115-351 162-385 (758)
66 1sxj_E Activator 1 40 kDa subu 99.8 9.8E-18 3.3E-22 163.0 17.3 197 122-350 3-243 (354)
67 1fnn_A CDC6P, cell division co 99.8 5.2E-17 1.8E-21 159.7 22.6 207 130-354 14-257 (389)
68 1qvr_A CLPB protein; coiled co 99.8 3.7E-18 1.3E-22 184.3 14.5 213 118-352 155-393 (854)
69 2qby_A CDC6 homolog 1, cell di 99.8 2.6E-17 8.8E-22 161.5 18.8 206 129-353 16-254 (386)
70 1sxj_C Activator 1 40 kDa subu 99.7 1.7E-17 5.9E-22 160.5 16.3 180 121-334 13-203 (340)
71 2p65_A Hypothetical protein PF 99.7 1.2E-17 4.1E-22 146.6 12.0 158 123-301 12-187 (187)
72 1qvr_A CLPB protein; coiled co 99.7 3E-17 1E-21 177.2 15.5 211 132-357 557-825 (854)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 5.9E-17 2E-21 163.0 15.6 153 134-313 23-196 (500)
74 3te6_A Regulatory protein SIR3 99.7 9E-17 3.1E-21 152.2 15.5 199 135-356 22-291 (318)
75 2bjv_A PSP operon transcriptio 99.7 3.2E-16 1.1E-20 146.1 16.3 197 130-351 3-240 (265)
76 3f9v_A Minichromosome maintena 99.7 1.7E-17 5.8E-22 171.3 3.4 252 133-416 295-590 (595)
77 2w2u_A Hypothetical P60 katani 99.7 4E-16 1.4E-20 116.5 9.4 73 1-73 9-83 (83)
78 2v6y_A AAA family ATPase, P60 99.6 4.9E-16 1.7E-20 116.4 8.8 73 1-73 1-75 (83)
79 1ojl_A Transcriptional regulat 99.6 1.3E-15 4.6E-20 144.6 12.0 193 133-351 2-235 (304)
80 1a5t_A Delta prime, HOLB; zinc 99.6 1.6E-14 5.4E-19 139.2 17.9 173 137-345 6-206 (334)
81 3k1j_A LON protease, ATP-depen 99.6 2E-14 6.9E-19 149.3 15.0 235 125-428 33-389 (604)
82 4a5x_A MITD1, MIT domain-conta 99.6 1.7E-14 5.8E-19 108.5 10.4 72 5-76 12-83 (86)
83 2v6x_A Vacuolar protein sortin 99.6 1.6E-14 5.6E-19 109.3 10.1 75 1-75 4-79 (85)
84 2cpt_A SKD1 protein, vacuolar 99.6 6E-14 2.1E-18 111.8 13.8 77 1-77 8-87 (117)
85 1wfd_A Hypothetical protein 15 99.6 2.5E-14 8.4E-19 109.6 10.4 73 4-76 10-82 (93)
86 1w5s_A Origin recognition comp 99.5 1.1E-13 3.9E-18 136.9 17.7 211 130-353 19-275 (412)
87 3n70_A Transport activator; si 99.5 1.8E-14 6E-19 121.5 9.2 131 134-299 2-143 (145)
88 3co5_A Putative two-component 99.5 5.3E-15 1.8E-19 124.4 4.4 131 134-299 5-141 (143)
89 2gno_A DNA polymerase III, gam 99.5 1.8E-13 6.2E-18 129.6 12.6 142 137-313 1-152 (305)
90 3aji_B S6C, proteasome (prosom 99.4 5.3E-13 1.8E-17 100.9 6.5 82 301-426 2-83 (83)
91 3vlf_B 26S protease regulatory 99.4 1E-12 3.5E-17 100.2 7.0 86 301-429 2-88 (88)
92 3cmw_A Protein RECA, recombina 99.3 1.6E-12 5.3E-17 145.8 9.7 152 127-280 1014-1218(1706)
93 3ec2_A DNA replication protein 99.3 1.1E-11 3.8E-16 108.1 10.8 133 126-281 3-144 (180)
94 3f8t_A Predicted ATPase involv 99.3 5.4E-11 1.8E-15 116.5 16.2 241 135-415 215-485 (506)
95 2krk_A 26S protease regulatory 99.2 8.7E-12 3E-16 94.3 6.0 78 296-416 7-84 (86)
96 3kw6_A 26S protease regulatory 99.2 2.4E-11 8.3E-16 90.4 6.9 75 298-415 1-75 (78)
97 2qen_A Walker-type ATPase; unk 99.2 1.3E-09 4.6E-14 104.8 20.3 194 127-346 6-248 (350)
98 2ymb_A MITD1, MIT domain-conta 99.2 1.9E-12 6.5E-17 116.3 0.0 74 4-77 18-91 (257)
99 1ny5_A Transcriptional regulat 99.2 5.9E-10 2E-14 109.2 16.3 194 132-351 136-370 (387)
100 4akg_A Glutathione S-transfera 99.2 1.3E-10 4.6E-15 135.7 13.5 137 167-314 1268-1432(2695)
101 2kjq_A DNAA-related protein; s 99.1 1.1E-10 3.6E-15 98.6 7.4 106 165-298 35-146 (149)
102 3dzd_A Transcriptional regulat 99.1 8.1E-10 2.8E-14 107.4 14.3 193 133-350 129-360 (368)
103 2dzn_B 26S protease regulatory 99.1 2.1E-11 7.1E-16 91.7 1.8 81 303-426 1-82 (82)
104 2fna_A Conserved hypothetical 99.1 2.1E-09 7.1E-14 103.7 16.3 189 127-346 7-252 (357)
105 2w58_A DNAI, primosome compone 99.0 5E-10 1.7E-14 99.4 7.6 102 126-237 18-127 (202)
106 2vhj_A Ntpase P4, P4; non- hyd 98.9 5.4E-10 1.9E-14 104.8 3.6 119 164-286 121-241 (331)
107 2r2a_A Uncharacterized protein 98.9 2.2E-09 7.7E-14 94.8 7.3 128 167-303 6-156 (199)
108 4akg_A Glutathione S-transfera 98.9 2.9E-08 9.9E-13 116.3 18.4 164 167-349 646-838 (2695)
109 2qgz_A Helicase loader, putati 98.9 1.8E-09 6.2E-14 102.4 5.9 99 128-237 119-226 (308)
110 1jr3_D DNA polymerase III, del 98.8 6.6E-08 2.2E-12 93.1 15.3 162 166-349 18-190 (343)
111 1tue_A Replication protein E1; 98.8 4.7E-09 1.6E-13 91.8 6.3 109 166-300 58-179 (212)
112 3vkg_A Dynein heavy chain, cyt 98.6 1.8E-07 6.1E-12 110.5 11.3 134 167-313 1305-1469(3245)
113 1u0j_A DNA replication protein 98.5 3.2E-07 1.1E-11 83.9 9.3 29 164-192 102-130 (267)
114 1ye8_A Protein THEP1, hypothet 98.5 1.6E-06 5.5E-11 75.0 12.7 27 168-194 2-28 (178)
115 3cmu_A Protein RECA, recombina 98.5 4.1E-07 1.4E-11 103.6 10.6 117 162-280 1423-1563(2050)
116 3vkg_A Dynein heavy chain, cyt 98.4 1.3E-06 4.3E-11 103.4 13.9 163 167-348 605-797 (3245)
117 2dl1_A Spartin; SPG20, MIT, st 98.3 6.8E-06 2.3E-10 63.8 10.7 74 4-77 17-98 (116)
118 1svm_A Large T antigen; AAA+ f 98.1 1.7E-06 6E-11 83.7 4.5 114 163-297 166-282 (377)
119 2w0m_A SSO2452; RECA, SSPF, un 98.1 2.6E-05 8.9E-10 69.9 11.8 36 163-198 20-58 (235)
120 1z6t_A APAF-1, apoptotic prote 98.1 6.9E-05 2.4E-09 77.3 16.3 176 129-344 120-328 (591)
121 3hr8_A Protein RECA; alpha and 98.0 2.3E-05 7.9E-10 75.1 10.9 78 162-239 57-153 (356)
122 2cvh_A DNA repair and recombin 98.0 5E-05 1.7E-09 67.5 11.3 40 162-201 16-55 (220)
123 1xp8_A RECA protein, recombina 97.9 4.9E-05 1.7E-09 73.3 11.2 78 162-239 70-166 (366)
124 3upu_A ATP-dependent DNA helic 97.9 1.9E-05 6.3E-10 79.0 8.4 57 121-190 12-69 (459)
125 1n0w_A DNA repair protein RAD5 97.9 3.8E-05 1.3E-09 69.5 9.0 78 162-239 20-133 (243)
126 2r8r_A Sensor protein; KDPD, P 97.8 0.00047 1.6E-08 61.3 15.1 121 167-303 7-168 (228)
127 2ehv_A Hypothetical protein PH 97.8 5.1E-05 1.7E-09 68.9 9.3 26 162-187 26-51 (251)
128 2orw_A Thymidine kinase; TMTK, 97.8 1.5E-05 5.3E-10 69.2 5.4 114 167-298 4-137 (184)
129 3eab_A Spastin; spastin, MIT, 97.8 7.9E-05 2.7E-09 55.0 8.2 70 4-73 11-88 (89)
130 2zr9_A Protein RECA, recombina 97.8 5E-05 1.7E-09 72.9 9.3 78 162-239 57-153 (349)
131 1qhx_A CPT, protein (chloramph 97.8 4.5E-05 1.5E-09 65.5 8.0 34 167-200 4-37 (178)
132 2b8t_A Thymidine kinase; deoxy 97.8 4.4E-05 1.5E-09 68.2 7.6 71 166-237 12-101 (223)
133 2dr3_A UPF0273 protein PH0284; 97.8 0.00017 5.8E-09 65.2 11.1 39 161-199 18-59 (247)
134 2z43_A DNA repair and recombin 97.7 6E-05 2.1E-09 71.6 8.2 78 162-239 103-217 (324)
135 2a5y_B CED-4; apoptosis; HET: 97.7 0.00038 1.3E-08 71.1 14.8 166 136-335 131-329 (549)
136 3sfz_A APAF-1, apoptotic pepti 97.7 0.00034 1.2E-08 78.3 15.5 172 128-336 119-321 (1249)
137 1g5t_A COB(I)alamin adenosyltr 97.7 0.00039 1.3E-08 60.4 12.1 116 167-297 29-177 (196)
138 1v5w_A DMC1, meiotic recombina 97.7 0.00011 3.6E-09 70.5 9.0 78 162-239 118-233 (343)
139 1u94_A RECA protein, recombina 97.7 8.1E-05 2.8E-09 71.5 8.1 77 163-239 60-155 (356)
140 2iut_A DNA translocase FTSK; n 97.7 0.00044 1.5E-08 69.9 13.7 74 227-310 345-420 (574)
141 3trf_A Shikimate kinase, SK; a 97.6 2.6E-05 9E-10 67.5 3.7 33 166-198 5-37 (185)
142 3lda_A DNA repair protein RAD5 97.6 0.00016 5.4E-09 70.5 9.6 80 161-240 173-288 (400)
143 3dm5_A SRP54, signal recogniti 97.6 0.00085 2.9E-08 65.9 14.4 73 165-237 99-194 (443)
144 1vma_A Cell division protein F 97.6 0.0013 4.6E-08 61.6 14.9 73 164-236 102-197 (306)
145 4a74_A DNA repair and recombin 97.6 0.00015 5.2E-09 64.8 8.0 29 162-190 21-49 (231)
146 3io5_A Recombination and repai 97.6 0.00021 7E-09 66.8 8.9 78 162-240 25-126 (333)
147 3vaa_A Shikimate kinase, SK; s 97.6 3.8E-05 1.3E-09 67.5 3.8 35 164-198 23-57 (199)
148 3cmu_A Protein RECA, recombina 97.5 0.00015 5.1E-09 83.0 9.0 115 162-277 728-866 (2050)
149 2p5t_B PEZT; postsegregational 97.5 0.00035 1.2E-08 63.8 10.0 39 164-202 30-68 (253)
150 1gvn_B Zeta; postsegregational 97.5 0.00022 7.6E-09 66.4 8.7 38 165-202 32-69 (287)
151 1pzn_A RAD51, DNA repair and r 97.5 0.00027 9.2E-09 67.8 9.1 41 161-201 126-175 (349)
152 3iij_A Coilin-interacting nucl 97.5 6.8E-05 2.3E-09 64.6 4.2 32 166-197 11-42 (180)
153 2rhm_A Putative kinase; P-loop 97.5 8.3E-05 2.8E-09 64.6 4.7 33 165-197 4-36 (193)
154 3kb2_A SPBC2 prophage-derived 97.5 7.1E-05 2.4E-09 63.7 4.1 31 168-198 3-33 (173)
155 3crm_A TRNA delta(2)-isopenten 97.5 6.1E-05 2.1E-09 71.0 4.0 34 167-200 6-39 (323)
156 3e1s_A Exodeoxyribonuclease V, 97.5 0.00014 4.9E-09 74.4 6.8 33 167-199 205-240 (574)
157 2fz4_A DNA repair protein RAD2 97.4 0.00059 2E-08 61.6 10.0 33 168-200 110-142 (237)
158 2i1q_A DNA repair and recombin 97.4 0.00021 7.2E-09 67.7 7.2 78 162-239 94-218 (322)
159 2ius_A DNA translocase FTSK; n 97.4 0.0016 5.5E-08 65.2 13.8 76 226-311 297-375 (512)
160 1via_A Shikimate kinase; struc 97.4 8.9E-05 3.1E-09 63.5 4.1 30 168-197 6-35 (175)
161 2iyv_A Shikimate kinase, SK; t 97.4 7.8E-05 2.7E-09 64.4 3.7 32 167-198 3-34 (184)
162 1nlf_A Regulatory protein REPA 97.4 0.0011 3.8E-08 61.3 11.8 29 162-190 26-54 (279)
163 2zts_A Putative uncharacterize 97.4 0.00056 1.9E-08 61.8 9.6 39 161-199 25-67 (251)
164 1kag_A SKI, shikimate kinase I 97.4 0.00011 3.8E-09 62.6 4.5 30 167-196 5-34 (173)
165 1zuh_A Shikimate kinase; alpha 97.4 7.9E-05 2.7E-09 63.4 3.5 32 167-198 8-39 (168)
166 1y63_A LMAJ004144AAA protein; 97.4 8.5E-05 2.9E-09 64.3 3.7 32 166-197 10-42 (184)
167 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00037 1.3E-08 63.9 8.0 37 167-203 5-44 (260)
168 2cdn_A Adenylate kinase; phosp 97.3 0.00012 4.3E-09 64.1 4.2 31 167-197 21-51 (201)
169 2ze6_A Isopentenyl transferase 97.3 0.00012 4E-09 67.0 4.1 32 168-199 3-34 (253)
170 2c95_A Adenylate kinase 1; tra 97.3 0.00012 4.3E-09 63.6 3.7 33 166-198 9-41 (196)
171 1e6c_A Shikimate kinase; phosp 97.3 0.00013 4.5E-09 62.2 3.6 31 167-197 3-33 (173)
172 1aky_A Adenylate kinase; ATP:A 97.3 0.00018 6E-09 64.2 4.4 32 166-197 4-35 (220)
173 3lw7_A Adenylate kinase relate 97.3 0.00012 4.2E-09 62.2 3.3 29 168-197 3-31 (179)
174 1zp6_A Hypothetical protein AT 97.3 0.00014 4.9E-09 63.1 3.7 39 164-202 7-45 (191)
175 1tev_A UMP-CMP kinase; ploop, 97.3 0.00013 4.5E-09 63.3 3.5 30 167-196 4-33 (196)
176 3t61_A Gluconokinase; PSI-biol 97.3 0.00019 6.3E-09 63.1 4.5 32 166-197 18-49 (202)
177 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5E-09 62.7 3.7 30 167-196 5-34 (186)
178 3umf_A Adenylate kinase; rossm 97.2 0.00022 7.7E-09 63.3 4.6 39 163-203 26-64 (217)
179 3dl0_A Adenylate kinase; phosp 97.2 0.00016 5.4E-09 64.2 3.6 30 168-197 2-31 (216)
180 2rpa_A Katanin P60 ATPase-cont 97.2 0.002 6.9E-08 46.5 8.6 64 9-72 12-75 (78)
181 3tlx_A Adenylate kinase 2; str 97.2 0.00018 6.3E-09 65.2 3.9 33 165-197 28-60 (243)
182 1zd8_A GTP:AMP phosphotransfer 97.2 0.00016 5.4E-09 64.9 3.4 31 167-197 8-38 (227)
183 3fb4_A Adenylate kinase; psych 97.2 0.00017 5.9E-09 64.0 3.5 30 168-197 2-31 (216)
184 2vli_A Antibiotic resistance p 97.2 0.00016 5.4E-09 62.2 3.1 29 167-195 6-34 (183)
185 3kl4_A SRP54, signal recogniti 97.2 0.0013 4.4E-08 64.6 9.9 73 165-237 96-191 (433)
186 2bwj_A Adenylate kinase 5; pho 97.2 0.00017 6E-09 62.8 3.4 31 167-197 13-43 (199)
187 2i3b_A HCR-ntpase, human cance 97.2 0.0011 3.9E-08 57.5 8.5 23 168-190 3-25 (189)
188 1knq_A Gluconate kinase; ALFA/ 97.2 0.00032 1.1E-08 59.9 4.9 31 166-196 8-38 (175)
189 3be4_A Adenylate kinase; malar 97.2 0.0002 6.7E-09 63.8 3.7 31 167-197 6-36 (217)
190 2pt5_A Shikimate kinase, SK; a 97.2 0.00019 6.5E-09 60.8 3.4 30 168-197 2-31 (168)
191 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.6E-09 62.5 4.0 32 167-198 16-47 (203)
192 3jvv_A Twitching mobility prot 97.2 0.00033 1.1E-08 67.2 5.4 69 167-235 124-206 (356)
193 1ly1_A Polynucleotide kinase; 97.2 0.00017 5.9E-09 61.7 3.1 27 167-193 3-30 (181)
194 1ak2_A Adenylate kinase isoenz 97.2 0.00028 9.6E-09 63.5 4.6 31 167-197 17-47 (233)
195 3sr0_A Adenylate kinase; phosp 97.2 0.00026 8.9E-09 62.5 4.1 33 168-202 2-34 (206)
196 1vt4_I APAF-1 related killer D 97.2 0.0062 2.1E-07 65.7 15.2 43 136-189 131-173 (1221)
197 1kht_A Adenylate kinase; phosp 97.1 0.00023 7.7E-09 61.6 3.5 25 167-191 4-28 (192)
198 4eun_A Thermoresistant glucoki 97.1 0.00031 1E-08 61.6 4.4 31 165-195 28-58 (200)
199 3bh0_A DNAB-like replicative h 97.1 0.0029 9.8E-08 59.7 11.4 38 162-199 64-104 (315)
200 3b6e_A Interferon-induced heli 97.1 0.0014 4.7E-08 57.7 8.7 24 167-190 49-72 (216)
201 1qf9_A UMP/CMP kinase, protein 97.1 0.00035 1.2E-08 60.4 4.7 31 167-197 7-37 (194)
202 2gxq_A Heat resistant RNA depe 97.1 0.0025 8.6E-08 55.7 10.3 23 167-189 39-62 (207)
203 1w4r_A Thymidine kinase; type 97.1 0.001 3.5E-08 57.6 7.3 35 166-200 20-57 (195)
204 3foz_A TRNA delta(2)-isopenten 97.1 0.0005 1.7E-08 64.1 5.7 34 167-200 11-44 (316)
205 2pez_A Bifunctional 3'-phospho 97.1 0.00035 1.2E-08 59.9 4.5 36 166-201 5-43 (179)
206 1cr0_A DNA primase/helicase; R 97.1 0.0026 8.9E-08 59.3 10.7 36 163-198 32-71 (296)
207 1zak_A Adenylate kinase; ATP:A 97.1 0.00027 9.3E-09 63.0 3.6 30 167-196 6-35 (222)
208 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00021 7.3E-09 67.9 3.1 53 136-196 2-54 (359)
209 2q6t_A DNAB replication FORK h 97.1 0.0026 9E-08 63.0 11.1 39 161-199 195-237 (444)
210 2eyu_A Twitching motility prot 97.1 0.00055 1.9E-08 62.8 5.4 72 164-235 23-108 (261)
211 2bbw_A Adenylate kinase 4, AK4 97.0 0.00038 1.3E-08 63.1 4.2 32 165-196 26-57 (246)
212 1e4v_A Adenylate kinase; trans 97.0 0.00041 1.4E-08 61.5 4.0 30 168-197 2-31 (214)
213 3uie_A Adenylyl-sulfate kinase 97.0 0.00053 1.8E-08 60.1 4.7 39 164-202 23-64 (200)
214 3zvl_A Bifunctional polynucleo 97.0 0.0022 7.5E-08 63.0 9.6 32 165-196 257-288 (416)
215 2pbr_A DTMP kinase, thymidylat 97.0 0.00054 1.8E-08 59.4 4.5 31 168-198 2-35 (195)
216 2v54_A DTMP kinase, thymidylat 97.0 0.0005 1.7E-08 60.2 4.3 33 166-198 4-37 (204)
217 2r6a_A DNAB helicase, replicat 97.0 0.0059 2E-07 60.7 12.6 38 162-199 199-240 (454)
218 1cke_A CK, MSSA, protein (cyti 97.0 0.00058 2E-08 60.9 4.6 30 167-196 6-35 (227)
219 2xb4_A Adenylate kinase; ATP-b 97.0 0.00049 1.7E-08 61.5 4.1 30 168-197 2-31 (223)
220 2jaq_A Deoxyguanosine kinase; 97.0 0.00047 1.6E-08 60.2 3.8 29 168-196 2-30 (205)
221 3cmw_A Protein RECA, recombina 97.0 0.002 7E-08 73.0 9.7 100 165-264 1430-1553(1706)
222 2crb_A Nuclear receptor bindin 97.0 0.016 5.5E-07 42.6 11.1 68 4-71 10-77 (97)
223 1t6n_A Probable ATP-dependent 96.9 0.0086 2.9E-07 52.9 12.1 57 130-189 14-74 (220)
224 1qde_A EIF4A, translation init 96.9 0.0053 1.8E-07 54.4 10.7 58 129-189 13-75 (224)
225 2z0h_A DTMP kinase, thymidylat 96.9 0.00067 2.3E-08 58.9 4.5 30 169-198 3-35 (197)
226 1nks_A Adenylate kinase; therm 96.9 0.00033 1.1E-08 60.6 2.4 32 168-199 3-37 (194)
227 2if2_A Dephospho-COA kinase; a 96.9 0.00043 1.5E-08 60.7 3.1 30 168-198 3-32 (204)
228 3r20_A Cytidylate kinase; stru 96.9 0.0007 2.4E-08 60.8 4.3 30 167-196 10-39 (233)
229 3nwj_A ATSK2; P loop, shikimat 96.9 0.00073 2.5E-08 61.5 4.4 32 167-198 49-80 (250)
230 3a8t_A Adenylate isopentenyltr 96.9 0.00048 1.6E-08 65.1 3.2 33 167-199 41-73 (339)
231 1m7g_A Adenylylsulfate kinase; 96.8 0.0022 7.4E-08 56.6 7.2 37 166-202 25-65 (211)
232 1q57_A DNA primase/helicase; d 96.8 0.0065 2.2E-07 61.2 11.6 38 162-199 238-279 (503)
233 2grj_A Dephospho-COA kinase; T 96.8 0.00066 2.2E-08 59.2 3.4 32 167-198 13-44 (192)
234 3exa_A TRNA delta(2)-isopenten 96.8 0.00071 2.4E-08 63.1 3.7 34 167-200 4-37 (322)
235 2ewv_A Twitching motility prot 96.8 0.00097 3.3E-08 64.5 4.8 72 164-235 134-219 (372)
236 3ake_A Cytidylate kinase; CMP 96.8 0.00094 3.2E-08 58.5 4.2 31 168-198 4-34 (208)
237 2wwf_A Thymidilate kinase, put 96.8 0.00039 1.3E-08 61.3 1.7 28 166-193 10-37 (212)
238 1jjv_A Dephospho-COA kinase; P 96.8 0.00078 2.7E-08 59.1 3.6 29 168-197 4-32 (206)
239 4e22_A Cytidylate kinase; P-lo 96.7 0.0012 4.1E-08 60.1 4.9 32 165-196 26-57 (252)
240 2plr_A DTMP kinase, probable t 96.7 0.00084 2.9E-08 59.0 3.7 27 167-193 5-31 (213)
241 1p9r_A General secretion pathw 96.7 0.0052 1.8E-07 60.1 9.6 94 129-235 143-246 (418)
242 3bgw_A DNAB-like replicative h 96.7 0.0093 3.2E-07 58.9 11.5 38 162-199 193-233 (444)
243 2qor_A Guanylate kinase; phosp 96.7 0.00097 3.3E-08 58.5 3.8 29 163-191 9-37 (204)
244 1vec_A ATP-dependent RNA helic 96.7 0.0068 2.3E-07 52.8 9.2 18 167-184 41-58 (206)
245 1w36_D RECD, exodeoxyribonucle 96.7 0.0024 8.2E-08 65.9 7.0 24 167-190 165-188 (608)
246 1nn5_A Similar to deoxythymidy 96.7 0.00049 1.7E-08 60.7 1.6 26 166-191 9-34 (215)
247 2px0_A Flagellar biosynthesis 96.7 0.0077 2.6E-07 56.1 9.8 36 165-200 104-143 (296)
248 1uj2_A Uridine-cytidine kinase 96.7 0.0016 5.5E-08 59.2 5.0 37 167-203 23-67 (252)
249 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.4E-08 57.4 4.1 31 166-197 8-38 (203)
250 1kgd_A CASK, peripheral plasma 96.6 0.0012 4E-08 56.8 3.7 25 167-191 6-30 (180)
251 2yvu_A Probable adenylyl-sulfa 96.6 0.0017 5.9E-08 55.9 4.7 36 165-200 12-50 (186)
252 1ex7_A Guanylate kinase; subst 96.6 0.0015 5.1E-08 56.5 4.2 28 167-194 2-29 (186)
253 1q0u_A Bstdead; DEAD protein, 96.6 0.012 4E-07 52.0 10.1 53 130-185 4-60 (219)
254 2pl3_A Probable ATP-dependent 96.6 0.01 3.4E-07 53.1 9.8 53 129-184 24-80 (236)
255 2axn_A 6-phosphofructo-2-kinas 96.6 0.022 7.6E-07 57.4 13.2 36 167-202 36-74 (520)
256 1vht_A Dephospho-COA kinase; s 96.6 0.0017 5.7E-08 57.6 4.4 30 167-197 5-34 (218)
257 3bor_A Human initiation factor 96.6 0.0079 2.7E-07 53.9 9.0 55 128-185 28-86 (237)
258 2xau_A PRE-mRNA-splicing facto 96.6 0.0048 1.6E-07 65.5 8.6 62 128-189 70-132 (773)
259 3e70_C DPA, signal recognition 96.6 0.0086 3E-07 56.6 9.5 27 164-190 127-153 (328)
260 3d3q_A TRNA delta(2)-isopenten 96.5 0.0013 4.3E-08 62.4 3.6 32 167-198 8-39 (340)
261 1q3t_A Cytidylate kinase; nucl 96.5 0.0019 6.3E-08 58.2 4.6 34 164-197 14-47 (236)
262 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.9E-08 56.0 4.1 25 168-192 4-28 (189)
263 3tau_A Guanylate kinase, GMP k 96.5 0.0018 6.1E-08 57.1 4.1 28 165-192 7-34 (208)
264 2qt1_A Nicotinamide riboside k 96.5 0.0012 4.1E-08 58.0 3.0 32 165-196 20-52 (207)
265 2oxc_A Probable ATP-dependent 96.5 0.013 4.3E-07 52.3 9.7 52 129-183 23-78 (230)
266 2h92_A Cytidylate kinase; ross 96.5 0.002 6.9E-08 57.0 4.4 31 167-197 4-34 (219)
267 3iuy_A Probable ATP-dependent 96.5 0.012 4.2E-07 52.2 9.5 18 167-184 58-75 (228)
268 1xx6_A Thymidine kinase; NESG, 96.4 0.0079 2.7E-07 52.2 7.6 33 166-198 8-43 (191)
269 4b3f_X DNA-binding protein smu 96.4 0.014 4.6E-07 60.8 10.8 50 138-201 191-243 (646)
270 1tf7_A KAIC; homohexamer, hexa 96.4 0.015 5E-07 58.9 10.6 77 162-238 277-384 (525)
271 3fe2_A Probable ATP-dependent 96.4 0.0097 3.3E-07 53.5 8.3 18 167-184 67-84 (242)
272 2f6r_A COA synthase, bifunctio 96.4 0.0027 9.2E-08 58.8 4.6 31 166-197 75-105 (281)
273 3llm_A ATP-dependent RNA helic 96.4 0.017 5.9E-07 51.7 9.9 21 167-187 77-97 (235)
274 3thx_B DNA mismatch repair pro 96.4 0.015 5.2E-07 62.4 11.0 24 165-188 672-695 (918)
275 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.002 6.8E-08 61.2 3.8 70 167-236 172-251 (330)
276 2j41_A Guanylate kinase; GMP, 96.4 0.0018 6E-08 56.7 3.2 25 166-190 6-30 (207)
277 1hv8_A Putative ATP-dependent 96.3 0.018 6.2E-07 54.7 10.6 68 129-199 5-82 (367)
278 2qmh_A HPR kinase/phosphorylas 96.3 0.0015 5.1E-08 56.7 2.5 32 166-198 34-65 (205)
279 3eph_A TRNA isopentenyltransfe 96.3 0.002 6.8E-08 62.3 3.5 31 167-197 3-33 (409)
280 1lvg_A Guanylate kinase, GMP k 96.3 0.002 6.7E-08 56.3 3.2 26 166-191 4-29 (198)
281 2j9r_A Thymidine kinase; TK1, 96.3 0.0083 2.9E-07 52.7 7.2 32 167-198 29-63 (214)
282 1zu4_A FTSY; GTPase, signal re 96.3 0.013 4.6E-07 55.1 9.1 36 164-199 103-141 (320)
283 1x6v_B Bifunctional 3'-phospho 96.3 0.0079 2.7E-07 61.7 8.0 37 166-202 52-91 (630)
284 1ltq_A Polynucleotide kinase; 96.3 0.0021 7.3E-08 59.9 3.5 29 167-195 3-32 (301)
285 3tr0_A Guanylate kinase, GMP k 96.3 0.0024 8.3E-08 55.7 3.7 26 166-191 7-32 (205)
286 2j37_W Signal recognition part 96.3 0.013 4.5E-07 58.6 9.3 35 165-199 100-137 (504)
287 1tf7_A KAIC; homohexamer, hexa 96.2 0.02 6.9E-07 57.9 10.8 111 164-282 37-187 (525)
288 1rz3_A Hypothetical protein rb 96.2 0.0047 1.6E-07 54.0 5.3 36 165-200 21-59 (201)
289 3a00_A Guanylate kinase, GMP k 96.2 0.0026 9E-08 54.9 3.4 25 167-191 2-26 (186)
290 3asz_A Uridine kinase; cytidin 96.2 0.0025 8.5E-08 56.0 3.4 26 166-191 6-31 (211)
291 3fdi_A Uncharacterized protein 96.2 0.0031 1.1E-07 55.2 3.9 30 167-196 7-36 (201)
292 3ney_A 55 kDa erythrocyte memb 96.2 0.0039 1.3E-07 54.3 4.3 26 166-191 19-44 (197)
293 2yhs_A FTSY, cell division pro 96.2 0.11 3.8E-06 51.5 15.2 27 164-190 291-317 (503)
294 2v3c_C SRP54, signal recogniti 96.1 0.017 5.9E-07 56.7 9.2 35 166-200 99-136 (432)
295 2xxa_A Signal recognition part 96.1 0.015 5.2E-07 57.1 8.7 72 164-235 98-193 (433)
296 3c8u_A Fructokinase; YP_612366 96.1 0.0028 9.6E-08 55.8 3.1 28 164-191 20-47 (208)
297 1sky_E F1-ATPase, F1-ATP synth 96.1 0.011 3.6E-07 58.4 7.5 24 167-190 152-175 (473)
298 3ber_A Probable ATP-dependent 96.1 0.033 1.1E-06 50.2 10.3 52 130-184 43-98 (249)
299 3b9q_A Chloroplast SRP recepto 96.1 0.0054 1.8E-07 57.4 5.0 27 164-190 98-124 (302)
300 4a1f_A DNAB helicase, replicat 96.1 0.012 4.2E-07 55.7 7.5 37 163-199 43-82 (338)
301 1j8m_F SRP54, signal recogniti 96.0 0.013 4.4E-07 54.7 7.3 71 166-236 98-191 (297)
302 1xti_A Probable ATP-dependent 96.0 0.075 2.6E-06 50.9 13.1 56 130-188 8-67 (391)
303 1gtv_A TMK, thymidylate kinase 96.0 0.002 7E-08 56.6 1.5 24 168-191 2-25 (214)
304 4i1u_A Dephospho-COA kinase; s 95.9 0.015 5E-07 51.2 6.9 31 167-198 10-40 (210)
305 1ls1_A Signal recognition part 95.9 0.02 6.8E-07 53.3 8.3 72 165-236 97-191 (295)
306 2oap_1 GSPE-2, type II secreti 95.9 0.0037 1.3E-07 62.9 3.5 69 167-235 261-343 (511)
307 3gmt_A Adenylate kinase; ssgci 95.9 0.005 1.7E-07 54.9 3.9 30 168-197 10-39 (230)
308 3thx_A DNA mismatch repair pro 95.9 0.033 1.1E-06 60.0 10.9 22 167-188 663-684 (934)
309 1htw_A HI0065; nucleotide-bind 95.9 0.0054 1.8E-07 51.5 3.9 27 164-190 31-57 (158)
310 2va8_A SSO2462, SKI2-type heli 95.9 0.025 8.7E-07 59.4 9.8 71 128-198 6-82 (715)
311 2og2_A Putative signal recogni 95.9 0.0072 2.5E-07 57.8 5.0 28 163-190 154-181 (359)
312 1c9k_A COBU, adenosylcobinamid 95.9 0.0046 1.6E-07 53.0 3.3 32 169-201 2-33 (180)
313 4eaq_A DTMP kinase, thymidylat 95.9 0.0058 2E-07 54.7 4.1 32 165-196 25-58 (229)
314 1s2m_A Putative ATP-dependent 95.9 0.038 1.3E-06 53.3 10.3 56 129-187 20-79 (400)
315 1s96_A Guanylate kinase, GMP k 95.9 0.0048 1.7E-07 54.8 3.5 29 163-191 13-41 (219)
316 1z6g_A Guanylate kinase; struc 95.9 0.0049 1.7E-07 54.7 3.6 27 164-190 21-47 (218)
317 2gza_A Type IV secretion syste 95.8 0.013 4.5E-07 56.2 6.7 27 165-191 174-200 (361)
318 1znw_A Guanylate kinase, GMP k 95.8 0.0054 1.8E-07 53.8 3.6 27 165-191 19-45 (207)
319 3eiq_A Eukaryotic initiation f 95.8 0.029 9.8E-07 54.4 9.0 54 130-186 40-97 (414)
320 3fmo_B ATP-dependent RNA helic 95.7 0.12 4E-06 48.1 12.8 52 129-183 91-148 (300)
321 3pey_A ATP-dependent RNA helic 95.7 0.056 1.9E-06 51.8 10.9 55 130-187 5-65 (395)
322 2ffh_A Protein (FFH); SRP54, s 95.7 0.055 1.9E-06 52.9 10.6 71 165-235 97-190 (425)
323 4gp7_A Metallophosphoesterase; 95.7 0.0048 1.6E-07 52.4 2.8 21 166-186 9-29 (171)
324 2z0m_A 337AA long hypothetical 95.7 0.04 1.4E-06 51.6 9.5 33 167-199 32-64 (337)
325 2v9p_A Replication protein E1; 95.7 0.007 2.4E-07 56.5 3.9 32 163-194 123-154 (305)
326 3hdt_A Putative kinase; struct 95.7 0.0068 2.3E-07 54.0 3.6 30 167-196 15-44 (223)
327 1wb9_A DNA mismatch repair pro 95.6 0.085 2.9E-06 55.9 12.5 25 165-189 606-630 (800)
328 3lxw_A GTPase IMAP family memb 95.6 0.25 8.6E-06 44.3 14.2 24 166-189 21-44 (247)
329 2fwr_A DNA repair protein RAD2 95.6 0.018 6.3E-07 57.2 6.9 33 168-200 110-142 (472)
330 3p32_A Probable GTPase RV1496/ 95.6 0.035 1.2E-06 53.1 8.6 25 166-190 79-103 (355)
331 3dkp_A Probable ATP-dependent 95.6 0.047 1.6E-06 48.9 9.0 18 167-184 67-84 (245)
332 2jeo_A Uridine-cytidine kinase 95.5 0.008 2.7E-07 54.3 3.7 29 165-193 24-52 (245)
333 1a7j_A Phosphoribulokinase; tr 95.5 0.0047 1.6E-07 57.5 2.1 36 167-202 6-44 (290)
334 2zj8_A DNA helicase, putative 95.5 0.048 1.7E-06 57.3 10.2 68 131-198 2-75 (720)
335 1g41_A Heat shock protein HSLU 95.5 0.0016 5.5E-08 64.0 -1.1 60 247-309 125-188 (444)
336 3tbk_A RIG-I helicase domain; 95.4 0.15 5.1E-06 51.3 13.2 34 167-200 20-61 (555)
337 4a2p_A RIG-I, retinoic acid in 95.4 0.11 3.8E-06 52.4 12.2 34 167-200 23-64 (556)
338 2i4i_A ATP-dependent RNA helic 95.4 0.047 1.6E-06 53.0 9.0 53 128-183 13-69 (417)
339 2orv_A Thymidine kinase; TP4A 95.4 0.071 2.4E-06 47.3 9.1 33 166-198 19-54 (234)
340 3tqc_A Pantothenate kinase; bi 95.3 0.019 6.6E-07 53.9 5.7 28 164-191 90-117 (321)
341 1bif_A 6-phosphofructo-2-kinas 95.3 0.039 1.3E-06 54.9 8.3 25 167-191 40-64 (469)
342 1fuu_A Yeast initiation factor 95.3 0.072 2.5E-06 51.1 10.0 54 128-184 19-76 (394)
343 3vkw_A Replicase large subunit 95.3 0.015 5.2E-07 56.9 4.9 24 166-189 161-184 (446)
344 3ly5_A ATP-dependent RNA helic 95.3 0.042 1.4E-06 50.0 7.7 19 167-185 92-110 (262)
345 3lnc_A Guanylate kinase, GMP k 95.3 0.0064 2.2E-07 54.3 2.1 27 165-191 26-53 (231)
346 2p6r_A Afuhel308 helicase; pro 95.3 0.023 7.7E-07 59.7 6.6 33 166-198 40-75 (702)
347 3fmp_B ATP-dependent RNA helic 95.3 0.098 3.3E-06 52.0 11.0 52 130-184 92-149 (479)
348 3tqf_A HPR(Ser) kinase; transf 95.3 0.0097 3.3E-07 50.3 3.0 24 166-189 16-39 (181)
349 1np6_A Molybdopterin-guanine d 95.2 0.011 3.8E-07 50.4 3.4 24 167-190 7-30 (174)
350 1rj9_A FTSY, signal recognitio 95.2 0.012 4.1E-07 55.0 3.9 26 165-190 101-126 (304)
351 1sq5_A Pantothenate kinase; P- 95.2 0.019 6.5E-07 53.8 5.4 27 165-191 79-105 (308)
352 1odf_A YGR205W, hypothetical 3 95.2 0.012 4E-07 54.7 3.8 27 165-191 30-56 (290)
353 1xjc_A MOBB protein homolog; s 95.2 0.011 3.9E-07 50.0 3.3 32 167-198 5-39 (169)
354 3l9o_A ATP-dependent RNA helic 95.2 0.04 1.4E-06 60.7 8.5 33 167-199 200-235 (1108)
355 3aez_A Pantothenate kinase; tr 95.2 0.012 4.1E-07 55.3 3.7 28 164-191 88-115 (312)
356 1wp9_A ATP-dependent RNA helic 95.2 0.1 3.5E-06 51.2 10.8 33 168-200 25-61 (494)
357 2qm8_A GTPase/ATPase; G protei 95.1 0.046 1.6E-06 51.9 7.8 26 165-190 54-79 (337)
358 1m8p_A Sulfate adenylyltransfe 95.1 0.012 4.3E-07 59.9 4.0 37 166-202 396-436 (573)
359 2ged_A SR-beta, signal recogni 95.1 0.022 7.6E-07 48.8 4.9 47 138-190 26-72 (193)
360 2db3_A ATP-dependent RNA helic 95.0 0.12 4.2E-06 50.6 10.9 53 128-183 54-110 (434)
361 2ocp_A DGK, deoxyguanosine kin 95.0 0.016 5.4E-07 52.1 4.0 25 167-191 3-27 (241)
362 1wrb_A DJVLGB; RNA helicase, D 95.0 0.12 4.2E-06 46.4 10.0 18 167-184 61-78 (253)
363 2j0s_A ATP-dependent RNA helic 95.0 0.086 2.9E-06 51.0 9.6 55 130-187 37-95 (410)
364 3cr8_A Sulfate adenylyltranfer 95.0 0.036 1.2E-06 56.1 7.0 38 165-202 368-409 (552)
365 3tif_A Uncharacterized ABC tra 95.0 0.011 3.8E-07 53.0 2.8 28 164-191 29-56 (235)
366 3lv8_A DTMP kinase, thymidylat 94.9 0.014 4.7E-07 52.4 3.3 26 165-190 26-51 (236)
367 3kta_A Chromosome segregation 94.9 0.014 4.8E-07 49.8 3.2 24 168-191 28-51 (182)
368 2f1r_A Molybdopterin-guanine d 94.9 0.011 3.8E-07 50.2 2.4 25 167-191 3-27 (171)
369 2cbz_A Multidrug resistance-as 94.9 0.013 4.3E-07 52.8 2.8 27 164-190 29-55 (237)
370 3fht_A ATP-dependent RNA helic 94.9 0.13 4.6E-06 49.5 10.5 53 129-184 24-82 (412)
371 1p5z_B DCK, deoxycytidine kina 94.9 0.0071 2.4E-07 55.2 1.2 27 165-191 23-49 (263)
372 3ice_A Transcription terminati 94.8 0.064 2.2E-06 51.4 7.6 26 165-190 173-198 (422)
373 2pcj_A ABC transporter, lipopr 94.8 0.012 4.1E-07 52.4 2.5 27 165-191 29-55 (224)
374 3tmk_A Thymidylate kinase; pho 94.7 0.031 1.1E-06 49.4 5.0 30 166-195 5-34 (216)
375 3k53_A Ferrous iron transport 94.7 0.033 1.1E-06 51.0 5.4 23 167-189 4-26 (271)
376 3iby_A Ferrous iron transport 94.7 0.091 3.1E-06 47.6 8.3 23 167-189 2-24 (256)
377 2onk_A Molybdate/tungstate ABC 94.7 0.015 5.1E-07 52.4 2.9 24 167-190 25-48 (240)
378 1ewq_A DNA mismatch repair pro 94.7 0.13 4.3E-06 54.3 10.4 23 167-189 577-599 (765)
379 2gk6_A Regulator of nonsense t 94.7 0.027 9.2E-07 58.3 5.1 23 168-190 197-219 (624)
380 1b0u_A Histidine permease; ABC 94.6 0.015 5.2E-07 53.1 2.8 28 164-191 30-57 (262)
381 3v9p_A DTMP kinase, thymidylat 94.6 0.025 8.4E-07 50.4 4.1 25 166-190 25-49 (227)
382 3b85_A Phosphate starvation-in 94.6 0.012 4.1E-07 51.8 2.0 23 167-189 23-45 (208)
383 4a2q_A RIG-I, retinoic acid in 94.6 0.24 8.3E-06 52.6 12.5 33 167-199 264-304 (797)
384 1mv5_A LMRA, multidrug resista 94.6 0.016 5.3E-07 52.4 2.8 27 164-190 26-52 (243)
385 3sop_A Neuronal-specific septi 94.6 0.016 5.6E-07 53.1 2.9 23 168-190 4-26 (270)
386 1sgw_A Putative ABC transporte 94.6 0.016 5.3E-07 51.3 2.7 27 165-191 34-60 (214)
387 1oix_A RAS-related protein RAB 94.6 0.017 5.9E-07 49.7 2.9 24 167-190 30-53 (191)
388 2f9l_A RAB11B, member RAS onco 94.6 0.019 6.3E-07 49.8 3.1 23 167-189 6-28 (199)
389 2v6i_A RNA helicase; membrane, 94.5 0.04 1.4E-06 54.2 5.8 21 167-187 3-24 (431)
390 2p67_A LAO/AO transport system 94.5 0.096 3.3E-06 49.7 8.3 26 165-190 55-80 (341)
391 2zu0_C Probable ATP-dependent 94.5 0.02 7E-07 52.4 3.3 26 164-189 44-69 (267)
392 4edh_A DTMP kinase, thymidylat 94.5 0.02 6.9E-07 50.5 3.2 31 167-197 7-40 (213)
393 2dyk_A GTP-binding protein; GT 94.5 0.02 6.9E-07 47.2 3.1 23 167-189 2-24 (161)
394 1nrj_B SR-beta, signal recogni 94.5 0.023 7.9E-07 49.8 3.6 25 166-190 12-36 (218)
395 3oiy_A Reverse gyrase helicase 94.5 0.092 3.1E-06 51.0 8.2 20 167-186 37-56 (414)
396 2ghi_A Transport protein; mult 94.5 0.018 6.1E-07 52.6 2.8 27 164-190 44-70 (260)
397 3fvq_A Fe(3+) IONS import ATP- 94.5 0.019 6.6E-07 54.7 3.2 27 164-190 28-54 (359)
398 2d2e_A SUFC protein; ABC-ATPas 94.4 0.021 7.1E-07 51.8 3.2 25 165-189 28-52 (250)
399 2olj_A Amino acid ABC transpor 94.4 0.018 6.3E-07 52.5 2.8 28 164-191 48-75 (263)
400 2ixe_A Antigen peptide transpo 94.4 0.018 6.3E-07 52.8 2.8 27 164-190 43-69 (271)
401 1g6h_A High-affinity branched- 94.4 0.018 6E-07 52.5 2.7 26 165-190 32-57 (257)
402 2o8b_B DNA mismatch repair pro 94.4 0.18 6.2E-06 54.9 11.0 22 166-187 789-810 (1022)
403 2pze_A Cystic fibrosis transme 94.4 0.018 6.2E-07 51.4 2.7 27 164-190 32-58 (229)
404 2ff7_A Alpha-hemolysin translo 94.4 0.018 6.3E-07 52.0 2.7 27 164-190 33-59 (247)
405 1lw7_A Transcriptional regulat 94.4 0.023 8E-07 54.5 3.6 28 166-193 170-197 (365)
406 1ji0_A ABC transporter; ATP bi 94.3 0.019 6.4E-07 51.7 2.7 27 165-191 31-57 (240)
407 3gfo_A Cobalt import ATP-bindi 94.3 0.018 6.3E-07 52.9 2.7 26 165-190 33-58 (275)
408 4a2w_A RIG-I, retinoic acid in 94.3 0.27 9.1E-06 53.3 12.2 33 167-199 264-304 (936)
409 3d31_A Sulfate/molybdate ABC t 94.3 0.021 7.3E-07 54.3 3.1 27 164-190 24-50 (348)
410 1vpl_A ABC transporter, ATP-bi 94.3 0.02 6.9E-07 52.1 2.8 27 164-190 39-65 (256)
411 1g8f_A Sulfate adenylyltransfe 94.3 0.021 7.1E-07 57.2 3.1 26 167-192 396-421 (511)
412 2qi9_C Vitamin B12 import ATP- 94.3 0.019 6.6E-07 51.9 2.7 27 165-191 25-51 (249)
413 2wsm_A Hydrogenase expression/ 94.3 0.028 9.5E-07 49.4 3.6 25 167-191 31-55 (221)
414 2yz2_A Putative ABC transporte 94.3 0.021 7.2E-07 52.3 2.8 27 164-190 31-57 (266)
415 2yyz_A Sugar ABC transporter, 94.2 0.024 8.3E-07 54.2 3.4 27 164-190 27-53 (359)
416 4g1u_C Hemin import ATP-bindin 94.2 0.02 6.8E-07 52.4 2.6 27 164-190 35-61 (266)
417 2it1_A 362AA long hypothetical 94.2 0.024 8.3E-07 54.2 3.3 27 164-190 27-53 (362)
418 3fho_A ATP-dependent RNA helic 94.2 0.26 8.9E-06 49.4 11.1 24 166-189 158-182 (508)
419 1z2a_A RAS-related protein RAB 94.2 0.026 8.7E-07 46.9 3.1 23 167-189 6-28 (168)
420 3rlf_A Maltose/maltodextrin im 94.2 0.025 8.6E-07 54.4 3.3 27 164-190 27-53 (381)
421 1z47_A CYSA, putative ABC-tran 94.2 0.024 8.4E-07 54.0 3.2 26 165-190 40-65 (355)
422 1v43_A Sugar-binding transport 94.1 0.026 8.8E-07 54.2 3.3 27 164-190 35-61 (372)
423 2wji_A Ferrous iron transport 94.1 0.025 8.6E-07 47.2 2.9 23 167-189 4-26 (165)
424 3h1t_A Type I site-specific re 94.1 0.066 2.3E-06 54.8 6.6 24 167-190 199-222 (590)
425 2ihy_A ABC transporter, ATP-bi 94.1 0.022 7.5E-07 52.5 2.7 27 165-191 46-72 (279)
426 2zej_A Dardarin, leucine-rich 94.1 0.021 7.3E-07 48.7 2.4 21 168-188 4-24 (184)
427 1oxx_K GLCV, glucose, ABC tran 94.1 0.023 7.8E-07 54.3 2.8 27 164-190 29-55 (353)
428 2nq2_C Hypothetical ABC transp 94.1 0.023 7.8E-07 51.6 2.7 26 165-190 30-55 (253)
429 1kao_A RAP2A; GTP-binding prot 94.1 0.028 9.6E-07 46.4 3.1 23 167-189 4-26 (167)
430 2wjy_A Regulator of nonsense t 94.0 0.044 1.5E-06 58.2 5.1 23 168-190 373-395 (800)
431 1u8z_A RAS-related protein RAL 94.0 0.028 9.6E-07 46.5 3.0 23 167-189 5-27 (168)
432 2ce2_X GTPase HRAS; signaling 94.0 0.028 9.4E-07 46.4 2.9 23 167-189 4-26 (166)
433 2ykg_A Probable ATP-dependent 94.0 0.33 1.1E-05 50.5 11.8 22 167-188 29-50 (696)
434 1g29_1 MALK, maltose transport 94.0 0.028 9.6E-07 54.0 3.2 26 165-190 28-53 (372)
435 3e2i_A Thymidine kinase; Zn-bi 94.0 0.4 1.4E-05 42.0 10.3 32 167-198 29-63 (219)
436 1ek0_A Protein (GTP-binding pr 94.0 0.03 1E-06 46.5 3.1 23 167-189 4-26 (170)
437 3ld9_A DTMP kinase, thymidylat 93.9 0.036 1.2E-06 49.2 3.6 27 166-192 21-47 (223)
438 1upt_A ARL1, ADP-ribosylation 93.9 0.038 1.3E-06 46.0 3.6 24 166-189 7-30 (171)
439 4f4c_A Multidrug resistance pr 93.9 0.039 1.3E-06 62.1 4.6 29 163-191 441-469 (1321)
440 1f2t_A RAD50 ABC-ATPase; DNA d 93.9 0.029 9.8E-07 46.4 2.7 24 167-190 24-47 (149)
441 2nzj_A GTP-binding protein REM 93.9 0.03 1E-06 46.9 2.9 23 167-189 5-27 (175)
442 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.032 1.1E-06 46.8 3.1 23 167-189 8-30 (177)
443 1z0j_A RAB-22, RAS-related pro 93.8 0.032 1.1E-06 46.3 3.1 24 167-190 7-30 (170)
444 1ky3_A GTP-binding protein YPT 93.8 0.032 1.1E-06 47.0 3.0 24 166-189 8-31 (182)
445 2hf9_A Probable hydrogenase ni 93.8 0.063 2.1E-06 47.3 5.0 24 167-190 39-62 (226)
446 1z08_A RAS-related protein RAB 93.8 0.033 1.1E-06 46.3 3.0 23 167-189 7-29 (170)
447 2gks_A Bifunctional SAT/APS ki 93.8 0.11 3.9E-06 52.5 7.4 36 167-202 373-411 (546)
448 1g16_A RAS-related protein SEC 93.8 0.032 1.1E-06 46.4 2.9 23 167-189 4-26 (170)
449 2gj8_A MNME, tRNA modification 93.8 0.032 1.1E-06 47.1 2.9 23 167-189 5-27 (172)
450 2hxs_A RAB-26, RAS-related pro 93.7 0.035 1.2E-06 46.6 3.1 23 167-189 7-29 (178)
451 2pjz_A Hypothetical protein ST 93.7 0.026 8.9E-07 51.5 2.4 25 166-190 30-54 (263)
452 3nh6_A ATP-binding cassette SU 93.7 0.028 9.6E-07 52.5 2.6 28 163-190 77-104 (306)
453 1c1y_A RAS-related protein RAP 93.7 0.036 1.2E-06 45.9 3.1 23 167-189 4-26 (167)
454 3gd7_A Fusion complex of cysti 93.7 0.034 1.2E-06 53.8 3.2 26 164-189 45-70 (390)
455 2lkc_A Translation initiation 93.7 0.044 1.5E-06 46.0 3.6 24 166-189 8-31 (178)
456 2vp4_A Deoxynucleoside kinase; 93.7 0.035 1.2E-06 49.5 3.1 33 164-197 18-50 (230)
457 1r2q_A RAS-related protein RAB 93.7 0.037 1.3E-06 45.9 3.1 23 167-189 7-29 (170)
458 3q85_A GTP-binding protein REM 93.6 0.035 1.2E-06 46.2 2.9 21 168-188 4-24 (169)
459 1r8s_A ADP-ribosylation factor 93.6 0.038 1.3E-06 45.7 3.1 22 168-189 2-23 (164)
460 4tmk_A Protein (thymidylate ki 93.6 0.035 1.2E-06 49.0 2.9 24 167-190 4-27 (213)
461 2bbs_A Cystic fibrosis transme 93.6 0.031 1.1E-06 51.8 2.7 27 164-190 62-88 (290)
462 2wjg_A FEOB, ferrous iron tran 93.6 0.036 1.2E-06 47.1 2.9 23 167-189 8-30 (188)
463 3bc1_A RAS-related protein RAB 93.6 0.039 1.3E-06 47.0 3.1 23 167-189 12-34 (195)
464 3q72_A GTP-binding protein RAD 93.5 0.033 1.1E-06 46.2 2.6 22 167-188 3-24 (166)
465 2erx_A GTP-binding protein DI- 93.5 0.037 1.3E-06 46.0 2.9 23 167-189 4-26 (172)
466 4ag6_A VIRB4 ATPase, type IV s 93.5 0.068 2.3E-06 51.7 5.1 38 162-199 31-71 (392)
467 3o8b_A HCV NS3 protease/helica 93.5 0.92 3.2E-05 46.8 13.6 36 165-200 231-266 (666)
468 2y8e_A RAB-protein 6, GH09086P 93.5 0.039 1.3E-06 46.3 2.9 23 167-189 15-37 (179)
469 1m7b_A RND3/RHOE small GTP-bin 93.4 0.04 1.4E-06 46.9 2.9 23 167-189 8-30 (184)
470 1z0f_A RAB14, member RAS oncog 93.4 0.043 1.5E-06 46.0 3.1 23 167-189 16-38 (179)
471 2oil_A CATX-8, RAS-related pro 93.4 0.042 1.4E-06 47.0 3.1 23 167-189 26-48 (193)
472 2xgj_A ATP-dependent RNA helic 93.4 0.19 6.6E-06 54.7 8.9 33 167-199 102-137 (1010)
473 1yrb_A ATP(GTP)binding protein 93.4 0.094 3.2E-06 47.4 5.6 33 166-198 14-48 (262)
474 3con_A GTPase NRAS; structural 93.4 0.043 1.5E-06 46.8 3.1 23 167-189 22-44 (190)
475 4dsu_A GTPase KRAS, isoform 2B 93.4 0.043 1.5E-06 46.5 3.1 23 167-189 5-27 (189)
476 3a1s_A Iron(II) transport prot 93.4 0.1 3.4E-06 47.4 5.7 23 167-189 6-28 (258)
477 2c9o_A RUVB-like 1; hexameric 93.4 0.001 3.5E-08 66.2 -8.4 80 257-346 176-262 (456)
478 2fn4_A P23, RAS-related protei 93.3 0.041 1.4E-06 46.2 2.9 23 167-189 10-32 (181)
479 3b1v_A Ferrous iron uptake tra 93.3 0.094 3.2E-06 48.0 5.4 23 167-189 4-26 (272)
480 3clv_A RAB5 protein, putative; 93.3 0.051 1.7E-06 46.6 3.5 24 166-189 7-30 (208)
481 4gl2_A Interferon-induced heli 93.3 0.076 2.6E-06 55.5 5.4 23 167-189 23-45 (699)
482 2bme_A RAB4A, RAS-related prot 93.3 0.043 1.5E-06 46.5 2.9 23 167-189 11-33 (186)
483 2xzl_A ATP-dependent helicase 93.3 0.066 2.3E-06 56.9 4.8 31 168-198 377-411 (802)
484 2efe_B Small GTP-binding prote 93.2 0.046 1.6E-06 46.0 3.0 23 167-189 13-35 (181)
485 2a9k_A RAS-related protein RAL 93.2 0.047 1.6E-06 46.2 3.1 23 167-189 19-41 (187)
486 3kkq_A RAS-related protein M-R 93.2 0.053 1.8E-06 45.8 3.4 25 165-189 17-41 (183)
487 1svi_A GTP-binding protein YSX 93.2 0.047 1.6E-06 46.7 3.1 24 166-189 23-46 (195)
488 3i8s_A Ferrous iron transport 93.2 0.14 4.7E-06 46.9 6.4 23 167-189 4-26 (274)
489 3tui_C Methionine import ATP-b 93.2 0.049 1.7E-06 52.1 3.3 27 164-190 52-78 (366)
490 1m2o_B GTP-binding protein SAR 93.2 0.046 1.6E-06 46.8 3.0 23 167-189 24-46 (190)
491 3tw8_B RAS-related protein RAB 93.1 0.043 1.5E-06 46.1 2.7 22 167-188 10-31 (181)
492 4hlc_A DTMP kinase, thymidylat 93.1 0.08 2.7E-06 46.3 4.5 29 169-197 5-35 (205)
493 2npi_A Protein CLP1; CLP1-PCF1 93.1 0.049 1.7E-06 53.9 3.4 26 165-190 137-162 (460)
494 2obl_A ESCN; ATPase, hydrolase 93.1 0.077 2.6E-06 50.5 4.6 28 167-194 72-99 (347)
495 2g6b_A RAS-related protein RAB 93.1 0.051 1.8E-06 45.7 3.1 23 167-189 11-33 (180)
496 1qhl_A Protein (cell division 93.1 0.019 6.4E-07 51.2 0.2 23 169-191 30-52 (227)
497 3ihw_A Centg3; RAS, centaurin, 93.1 0.051 1.7E-06 46.4 3.0 23 167-189 21-43 (184)
498 2gf9_A RAS-related protein RAB 93.1 0.052 1.8E-06 46.3 3.1 23 167-189 23-45 (189)
499 2iwr_A Centaurin gamma 1; ANK 93.0 0.044 1.5E-06 46.1 2.6 23 167-189 8-30 (178)
500 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.052 1.8E-06 45.8 3.1 23 167-189 6-28 (186)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=3.2e-65 Score=512.29 Aligned_cols=427 Identities=56% Similarity=0.923 Sum_probs=265.6
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCCC
Q 042771 3 SNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGPA 81 (436)
Q Consensus 3 ~~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~-~d~~~~~~~~~k~~~y~~rae~lk~~l~~~~~~~~ 81 (436)
.+++++|++++++|+++|+.|+|++|+.+|++|+++|+++++.+ +++..++.+++|+.+|++|+|.|+..+.+......
T Consensus 5 ~~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~~~~~ 84 (444)
T 2zan_A 5 NTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQ 84 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 45899999999999999999999999999999999999999998 78888999999999999999999999965432211
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCCChHHHHHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC
Q 042771 82 HNGDAAVATRPKTKPKDGGDGGGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG 161 (436)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~ 161 (436)
.+.... ..++. ...++..........++...+...+...+..+.|+++|+||+|++.+++.|.+.+..|+.++.+|.+
T Consensus 85 ~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~ 162 (444)
T 2zan_A 85 KPVKEE-QSGPV-DEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG 162 (444)
T ss_dssp -----------------------------------------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG
T ss_pred cccccc-cCCcc-cccCCCCcccccccchHHHHHHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc
Confidence 100000 00000 0000000011111233445566677788888999999999999999999999999999999999887
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc-CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 240 (436)
...+++++||+||||||||+||+++|+++ +.+|+.++++++.+.|.|..+..++.+|..+....|+||||||||.+++.
T Consensus 163 ~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~ 242 (444)
T 2zan_A 163 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 242 (444)
T ss_dssp GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCC
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccC
Confidence 66778999999999999999999999999 89999999999999999998899999999999999999999999999887
Q ss_pred CCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCC
Q 042771 241 RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNL 320 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~ 320 (436)
+... ......++.+.|+..++++.....+++||+|||.++.++++++|||+..++++.|+.++|..||+.++...+..+
T Consensus 243 ~~~~-~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l 321 (444)
T 2zan_A 243 RSEN-ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL 321 (444)
T ss_dssp SSCC-CCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC
T ss_pred CCCc-cccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC
Confidence 7654 556778899999999998765567899999999999999999999999999999999999999999998887777
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhh-----------cCCCccCCCCCCchhhHhhHHHHhh
Q 042771 321 TESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKT-----------SNGMWMPCGPKQSGAVQISMQELAA 389 (436)
Q Consensus 321 ~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (436)
++.++..|+..+.||+++||..+|++|++.++++.....+|... .++.+.||++...++.++.+.++..
T Consensus 322 ~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (444)
T 2zan_A 322 TEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPG 401 (444)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCT
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCch
Confidence 89999999999999999999999999999999998766555432 1234778888776665544444333
Q ss_pred hccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCCC
Q 042771 390 KGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEEG 436 (436)
Q Consensus 390 ~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~~ 436 (436)
.. +..++||.+||..|++.++||+|+++++.|++|.++||++|
T Consensus 402 ~~----~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~~ 444 (444)
T 2zan_A 402 DK----LLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQEG 444 (444)
T ss_dssp TC----BCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTTC
T ss_pred hh----ccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCC
Confidence 32 23378999999999999999999999999999999999998
No 2
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.2e-51 Score=392.25 Aligned_cols=309 Identities=63% Similarity=1.056 Sum_probs=273.1
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-CCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~~~~ 201 (436)
+..+.|+++|+||+|++.+|+.|.+.+.+|+.++++|.+...+++++||+||||||||++|+++|+++ +.+|+.+++++
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 45678999999999999999999999999999999998777788999999999999999999999999 89999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY 281 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 281 (436)
+.+.+.|..+..++.+|..++...|+||||||+|.+.+.+... ......++.+.|+..++++.....+++||++||.++
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 9999999999999999999999999999999999998877654 456778899999999998865667899999999999
Q ss_pred cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhh
Q 042771 282 ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361 (436)
Q Consensus 282 ~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~ 361 (436)
.++++++|||+..++++.|+.++|..||+.++...+..+++.++..|+..+.||+++||..+|++|++.++++.....++
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~ 240 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999888877889999999999999999999999999999999998765444
Q ss_pred hhh-----------cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 042771 362 FKT-----------SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTK 430 (436)
Q Consensus 362 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~ 430 (436)
... .+..+.||++...++.+..+..+....+ ..++||.+||..|++.++||+|+++++.|++|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~ 316 (322)
T 1xwi_A 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKL----LEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTE 316 (322)
T ss_dssp EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGB----CCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHH
T ss_pred hhhccccccccccccccccccccccccchhhccccccccccc----cCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 321 1123677877766655544444433322 2378999999999999999999999999999999
Q ss_pred HhCCCC
Q 042771 431 EFGEEG 436 (436)
Q Consensus 431 ~~~~~~ 436 (436)
+||++|
T Consensus 317 ~~~~~~ 322 (322)
T 1xwi_A 317 DFGQEG 322 (322)
T ss_dssp TTCSCC
T ss_pred HHccCC
Confidence 999998
No 3
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-51 Score=394.22 Aligned_cols=266 Identities=32% Similarity=0.577 Sum_probs=235.2
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+......+.|+++|+||+|++++|+.|++.+.+|+.+|++|.. +..+++|+|||||||||||+||+++|++++.+|+.+
T Consensus 134 ~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 134 VSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp TTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred hhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 4456677889999999999999999999999999999999987 888889999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
+++++.++|+|+++..++.+|..|+...||||||||+|.+++.+..+.. .....+++++||..|+++. ...+++||+
T Consensus 214 ~~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-~~~~V~vIa 292 (405)
T 4b4t_J 214 SGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-TSKNIKIIM 292 (405)
T ss_dssp EGGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-CCCCEEEEE
T ss_pred EhHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-CCCCeEEEe
Confidence 9999999999999999999999999999999999999999988765432 3355778899999999984 456799999
Q ss_pred ccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 276 ATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 276 ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
|||.|+.||++++| ||++.|+|++|+.++|.+||+.++...+.. ++.++..||..|+||||+||..+|++|++.|++
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999877654 567899999999999999999999999999988
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERF 428 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~ 428 (436)
+.. ..||.+||..|++++.|+..+..+..++.|
T Consensus 372 ~~~------------------------------------------~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 372 ERR------------------------------------------IHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp TTC------------------------------------------SBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred cCC------------------------------------------CCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 753 579999999999998776655555555555
No 4
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=2e-50 Score=393.80 Aligned_cols=322 Identities=63% Similarity=1.003 Sum_probs=257.8
Q ss_pred hHHHHHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 110 PEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+..++...+...+..+.|+++|++|+|++.+++.|.+++..++.++++|.....+++++||+||||||||++|+++|++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 28 EDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp -------------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 44455667777888889999999999999999999999999999999999887788899999999999999999999999
Q ss_pred cCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 190 ADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 190 l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
++.+++.+++.++.+.+.|..+..++.+|..+....|+||||||+|.|.+.+... ......++.+.|+..|+++.....
T Consensus 108 ~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~ll~~l~~~~~~~~ 186 (355)
T 2qp9_X 108 ANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQ 186 (355)
T ss_dssp HTCEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---C
T ss_pred hCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-cchHHHHHHHHHHHHhhcccccCC
Confidence 9999999999999999999999999999999999999999999999998776543 556778889999999998865567
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
+++||++||.++.++++++|||+..+++++|+.++|..||+.++...+..+++.++..|+..+.||+++||..+|++|++
T Consensus 187 ~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~ 266 (355)
T 2qp9_X 187 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALM 266 (355)
T ss_dssp CEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999988777789999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhhh-----cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHH
Q 042771 350 EPVRKTQDAMFFFKT-----SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEV 424 (436)
Q Consensus 350 ~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~ 424 (436)
.++++.....++... ....++||++....+.+..+.++....+ ..++|+.+||..|++.++||+++++++.
T Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~df~~Al~~~~ps~~~~~~~~ 342 (355)
T 2qp9_X 267 QPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADEL----KEPDLTIKDFLKAIKSTRPTVNEDDLLK 342 (355)
T ss_dssp HHHHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGB----CCCCBCHHHHHHHHHHSCCSSCHHHHHH
T ss_pred HHHHHHHHhhhhhhhccccccccccCcCCccccchhhccccccccccc----ccCCccHHHHHHHHHHcCCCCCHHHHHH
Confidence 999987654433321 1124678887777666555544443333 3378999999999999999999999999
Q ss_pred HHHHHHHhCCCC
Q 042771 425 QERFTKEFGEEG 436 (436)
Q Consensus 425 y~~~~~~~~~~~ 436 (436)
|++|.++||++|
T Consensus 343 ~~~~~~~~~~~~ 354 (355)
T 2qp9_X 343 QEQFTRDFGQEG 354 (355)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHHHHhccCC
Confidence 999999999987
No 5
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=1.1e-49 Score=384.37 Aligned_cols=311 Identities=64% Similarity=1.029 Sum_probs=273.3
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..+..++|+++|++|+|++.+++.|.+++.+|+.++++|.....+++++||+||||||||++|+++|++++.+|+.++++
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~ 85 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS 85 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHH
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchH
Confidence 35677899999999999999999999999999999999988888889999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
++.+.+.|..+..++.+|..+....|+||||||||.|.+.+... ......++.+.|+..+++......+++||++||.+
T Consensus 86 ~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 86 DLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HHhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 99999999999999999999999999999999999998876443 44567788899999999886667789999999999
Q ss_pred CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhh
Q 042771 281 YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360 (436)
Q Consensus 281 ~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~ 360 (436)
+.+++++++||+..++++.|+.++|.+||+.++...+..+++.++..|+..+.||+++||..+|++|++.++++.....+
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999998888889999999999999999999999999999999999876544
Q ss_pred hhhh-----cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCC
Q 042771 361 FFKT-----SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEE 435 (436)
Q Consensus 361 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~ 435 (436)
+... ....+.||++...++..+.+.++...... .++||.+||.+|++.++||++.+++.+|++|.++||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELK----EPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBC----CCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhcccccccccccccccccccccccccccccccccc----CCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 4332 22357889888887777666555544333 37899999999999999999999999999999999998
Q ss_pred C
Q 042771 436 G 436 (436)
Q Consensus 436 ~ 436 (436)
|
T Consensus 321 ~ 321 (322)
T 3eie_A 321 G 321 (322)
T ss_dssp -
T ss_pred C
Confidence 7
No 6
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-49 Score=385.21 Aligned_cols=261 Identities=32% Similarity=0.576 Sum_probs=235.9
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+......+.|+++|+||+|++++|+.|.+.+.+|+.+|++|.. +..+++|+|||||||||||+||+++|++++.+|+.+
T Consensus 168 ~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 168 VSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp CCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred ceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 3344567889999999999999999999999999999999987 778889999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
+++++.++|+|+++..++.+|..|+...||||||||+|.+++.+.... ......+++..||..|+++. ...+++||+
T Consensus 248 ~~s~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-~~~~ViVIa 326 (437)
T 4b4t_I 248 VGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-DRGDVKVIM 326 (437)
T ss_dssp ESGGGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-CSSSEEEEE
T ss_pred EHHHhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-CCCCEEEEE
Confidence 999999999999999999999999999999999999999999885432 23355678889999999874 345799999
Q ss_pred ccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 276 ATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 276 ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
|||.|+.||++++| ||+..|+|++|+.++|.+||+.++...+.. ++.++..||..|+||||+||..+|++|++.|++
T Consensus 327 ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALR 405 (437)
T ss_dssp EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999877654 567899999999999999999999999999988
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHH
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLE 423 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~ 423 (436)
+.. ..||.+||..|+.++.|+.+.++++
T Consensus 406 ~~~------------------------------------------~~It~eDf~~Al~rv~~~~~~e~le 433 (437)
T 4b4t_I 406 ERR------------------------------------------MQVTAEDFKQAKERVMKNKVEENLE 433 (437)
T ss_dssp TTC------------------------------------------SCBCHHHHHHHHHHHHHHHCCCSSS
T ss_pred cCC------------------------------------------CccCHHHHHHHHHHHhCCCChhhHH
Confidence 754 4799999999999998887776654
No 7
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-48 Score=382.88 Aligned_cols=264 Identities=32% Similarity=0.545 Sum_probs=229.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.-+.+.|.|+|+||+|++++|+.|++.+.+|+.+|++|.. +..+++|+|||||||||||+||+++|++++.+|+.++++
T Consensus 198 m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 198 MTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 3455789999999999999999999999999999999987 788899999999999999999999999999999999999
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
++.++|+|++++.++.+|..|+...||||||||+|.++..+..... ......++..||..|++.. ...+++||+|||
T Consensus 278 ~L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-~~~~ViVIaATN 356 (467)
T 4b4t_H 278 ELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-PRGNIKVMFATN 356 (467)
T ss_dssp GGCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-CTTTEEEEEECS
T ss_pred HhhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-CCCcEEEEeCCC
Confidence 9999999999999999999999999999999999999988865322 3445677889999999874 455799999999
Q ss_pred CCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 279 TPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 279 ~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+|+.||++++| ||++.|+|++|+.++|.+||+.++...+.. .+.++..||+.|.||||+||..+|++|++.|+++..
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999 999999999999999999999999877654 567899999999999999999999999999988764
Q ss_pred hhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 042771 357 DAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVS-KSDLEVQERFT 429 (436)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s-~~~~~~y~~~~ 429 (436)
..||.+||..|+.++.++.. .....+|.+|+
T Consensus 436 ------------------------------------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 436 ------------------------------------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ------------------------------------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ------------------------------------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 57999999999999876544 35667888885
No 8
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-48 Score=382.88 Aligned_cols=264 Identities=33% Similarity=0.574 Sum_probs=233.2
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+......+.|.++|+||+|++++|+.|.+.+.+|+.+|++|.. +..+++|+|||||||||||++|+++|++++.+|+.+
T Consensus 167 ~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 167 VYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp CSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred hheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4455667889999999999999999999999999999999987 788889999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
+++++.++|+|+++..++.+|..|+...||||||||+|.+++.+.... .......+++.||..|+++.. ..+++||+
T Consensus 247 ~~s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-~~~vivI~ 325 (437)
T 4b4t_L 247 PASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-LGQTKIIM 325 (437)
T ss_dssp EGGGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-TTSSEEEE
T ss_pred ehhhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-CCCeEEEE
Confidence 999999999999999999999999999999999999999998875432 234567788999999999843 45799999
Q ss_pred ccCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 276 ATNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 276 ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
|||.|+.||++++| ||++.|+|++|+.++|.+||+.++...+.. ++.++..||..|+||||+||..+|++|++.|++
T Consensus 326 ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 326 ATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998 799999999999999999999999876654 577899999999999999999999999999988
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHH
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQE 426 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~ 426 (436)
+.. ..|+.+||..|++++.|+...+....|+
T Consensus 405 ~~~------------------------------------------~~i~~~d~~~Al~~v~~~~k~e~~~e~~ 435 (437)
T 4b4t_L 405 DDR------------------------------------------DHINPDDLMKAVRKVAEVKKLEGTIEYQ 435 (437)
T ss_dssp TTC------------------------------------------SSBCHHHHHHHHHHHHHTCC--------
T ss_pred cCC------------------------------------------CCCCHHHHHHHHHHHHhccCcccchhhh
Confidence 754 4799999999999999987766554444
No 9
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-48 Score=380.61 Aligned_cols=256 Identities=34% Similarity=0.596 Sum_probs=231.9
Q ss_pred hccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 120 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 120 ~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
......+.|+++|+||+|++++|+.|.+.+.+|+.+|++|.. +..+++|+|||||||||||++|+++|++++.+|+.++
T Consensus 168 ~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~ 247 (434)
T 4b4t_M 168 KAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA 247 (434)
T ss_dssp SCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 344456789999999999999999999999999999999987 7888899999999999999999999999999999999
Q ss_pred ccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 042771 199 SSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAA 276 (436)
Q Consensus 199 ~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 276 (436)
++++.++|+|++++.++.+|..|+...||||||||+|.+++.+..... ......++..||..|+++.. ..+++||+|
T Consensus 248 ~s~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-~~~ViVIaa 326 (434)
T 4b4t_M 248 APQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-DDRVKVLAA 326 (434)
T ss_dssp GGGGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-SCSSEEEEE
T ss_pred hhhhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-CCCEEEEEe
Confidence 999999999999999999999999999999999999999988865322 23456678899999999854 457999999
Q ss_pred cCCCCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHh
Q 042771 277 TNTPYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 277 tn~~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~ 354 (436)
||.|+.||++++| ||++.|+|++|+.++|.+||+.++...+.. ++.++..||..|.||||+||..+|++|++.|+++
T Consensus 327 TNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 327 TNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp CSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999998 999999999999999999999999876553 5678999999999999999999999999999887
Q ss_pred hhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCH
Q 042771 355 TQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSK 419 (436)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~ 419 (436)
.. ..|+.+||..|+.+++|+.+.
T Consensus 406 ~~------------------------------------------~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 406 GQ------------------------------------------SSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp TC------------------------------------------SSBCHHHHHHHHHSCSSSCCC
T ss_pred CC------------------------------------------CCcCHHHHHHHHHHHhCCCCc
Confidence 54 579999999999999998774
No 10
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2e-49 Score=416.07 Aligned_cols=293 Identities=35% Similarity=0.641 Sum_probs=196.7
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
..+.|+++|+|++|++++|+.|.+.+.+|+.+|+.|.. +..+++++|||||||||||++|+++|++++.+|+.++.+++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 34578999999999999999999999999999999987 67888999999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.++|+|++++.++.+|..|+...||||||||||.+++.|+.. ..+...++++++||.+|+++.. ..+|+||+|||.|
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-~~~V~vi~aTN~p 626 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGATNRP 626 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS-SSSEEEECC-CCS
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCc
Confidence 999999999999999999999999999999999999988532 2445678999999999999854 4579999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.||++++| ||++.|++++|+.++|.+||+.++.+.+.. .+.++..||+.|+||||+||..+|++|++.|+++....
T Consensus 627 ~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp SSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHHHHHHC-
T ss_pred hhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999 999999999999999999999999877654 67789999999999999999999999999999987653
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCC
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEE 435 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~ 435 (436)
........ ...+.... .. .....++|+.+||.+|+++++||+|.+++++|++|.++|++.
T Consensus 706 ~~~~~~~~-------~~~~~~~~-----~~-----~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 706 EIRRERER-------QTNPSAME-----VE-----EDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp ---------------------------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhhh-------ccCccccc-----cc-----cccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 21111000 00000000 00 011226899999999999999999999999999999998753
No 11
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-47 Score=376.21 Aligned_cols=262 Identities=35% Similarity=0.590 Sum_probs=235.6
Q ss_pred hccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 120 NSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 120 ~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
......+.|.++|+||+|++++|+.|.+.+.+|+.+|++|.. +..+++|+|||||||||||++|+++|++++.+|+.++
T Consensus 159 ~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~ 238 (428)
T 4b4t_K 159 SVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVN 238 (428)
T ss_dssp CCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 344556789999999999999999999999999999999987 7888899999999999999999999999999999999
Q ss_pred ccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 042771 199 SSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAA 276 (436)
Q Consensus 199 ~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 276 (436)
++++.++|+|+++..++.+|..|+...||||||||+|.+++.+... .......+++++||+.|+++.. ..+++||+|
T Consensus 239 ~~~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-~~~v~vI~a 317 (428)
T 4b4t_K 239 GSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-STNVKVIMA 317 (428)
T ss_dssp GGGTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-SCSEEEEEE
T ss_pred cchhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-CCCEEEEEe
Confidence 9999999999999999999999999999999999999999887543 2334567889999999999854 456999999
Q ss_pred cCCCCcccHHHHh--hccceEEcC-CCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 277 TNTPYALDQAIRR--RFDKRIYIP-LPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 277 tn~~~~l~~~l~~--Rf~~~i~~~-~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
||.|+.||++++| ||+..|+|| +|+.++|..||+.++...+.. ++.++..||..|+||||+||..+|++|++.|++
T Consensus 318 TN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 318 TNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp ESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999996 899999999999999876653 577899999999999999999999999999998
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhh-CCCCCCHHHHHHH
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLAR-QRPTVSKSDLEVQ 425 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~-~~ps~s~~~~~~y 425 (436)
+.. ..|+.+||.+|+.+ ++++.+.++++.|
T Consensus 397 ~~~------------------------------------------~~i~~~d~~~A~~~~~~~~~~~~~~d~y 427 (428)
T 4b4t_K 397 KNR------------------------------------------YVILQSDLEEAYATQVKTDNTVDKFDFY 427 (428)
T ss_dssp TTC------------------------------------------SSBCHHHHHHHHHHHSCSCCCSSCCCSC
T ss_pred CCC------------------------------------------CCCCHHHHHHHHHHhhCccCCccHhhhh
Confidence 764 47999999999976 6888877665554
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.1e-41 Score=325.22 Aligned_cols=292 Identities=36% Similarity=0.637 Sum_probs=240.2
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+..+.|+++|+||+|++.+++.|.+++..++.+++.|.. +..++.++||+||||||||++|+++|++++.+++.+++.+
T Consensus 5 ~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~ 84 (301)
T 3cf0_A 5 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 84 (301)
T ss_dssp CCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHH
Confidence 455789999999999999999999999999999998876 5677789999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+.+.+.|..+..++.+|..+....|+||||||+|.+...++.. .......++++.|+..++++. ...+++||++||.
T Consensus 85 l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-~~~~v~vi~atn~ 163 (301)
T 3cf0_A 85 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNR 163 (301)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-TTSSEEEEEEESC
T ss_pred HHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-CCCCEEEEEecCC
Confidence 9999999998999999999999999999999999998654321 112234567888999999874 3457999999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
++.++++++| ||+..++++.|+.++|.+|++.++...+.. .+.++..|+..+.||+++||..+|++|++.++++...
T Consensus 164 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~~ 242 (301)
T 3cf0_A 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 242 (301)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999876543 5678899999999999999999999999999987653
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFG 433 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~ 433 (436)
...... ....+. +. .+. .......+.|+.+||..|++.++||+|.++++.|++|.++|.
T Consensus 243 ~~~~~~---~~~~~~-~~----------~~~---~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 243 SEIRRE---RERQTN-PS----------AME---VEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHC-------------------------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred hhhhhh---hhcccc-cc----------ccc---ccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 211000 000000 00 000 000011257999999999999999999999999999999984
No 13
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-41 Score=328.16 Aligned_cols=292 Identities=42% Similarity=0.752 Sum_probs=248.4
Q ss_pred HHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 114 KLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
...+.+.+.+..+.++++|++|+|++.+++.|.+.+..++.+++.|.....+++++||+||||||||++|+++|++++.+
T Consensus 65 ~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 65 KMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp HHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred HHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 34445666677888999999999999999999999999888888887656677899999999999999999999999999
Q ss_pred eEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-CCCceE
Q 042771 194 FFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-NDQKVL 272 (436)
Q Consensus 194 ~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~ 272 (436)
++.++++++...+.+.....++.+|..+....|+||||||||.|...+..+ ......++++.|+..+++... ...+++
T Consensus 145 ~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 145 FFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-EHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred EEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-cchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 999999999999999999999999999999999999999999998776443 345667888999999987643 245799
Q ss_pred EEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 273 VLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 273 vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
||++||.++.+++++++||+..++++.|+.++|..+++.++......+++.++..|+..+.||+++||..+|++|+..++
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877777889999999999999999999999999999998
Q ss_pred HhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHh
Q 042771 353 RKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEF 432 (436)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~ 432 (436)
++...... ..+... ...+|+.+||..|+..++||++.++++.|++|.+.|
T Consensus 304 r~l~~~~~------------------------~~~~~~------~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~ 353 (357)
T 3d8b_A 304 RSLQTADI------------------------ATITPD------QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTF 353 (357)
T ss_dssp HHCCC----------------------------------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHH
T ss_pred HHhhhhhh------------------------cccccc------ccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Confidence 87642100 000000 116899999999999999999999999999999999
Q ss_pred CCCC
Q 042771 433 GEEG 436 (436)
Q Consensus 433 ~~~~ 436 (436)
|+.+
T Consensus 354 g~~~ 357 (357)
T 3d8b_A 354 GCGK 357 (357)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9753
No 14
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.4e-40 Score=317.29 Aligned_cols=289 Identities=43% Similarity=0.710 Sum_probs=240.2
Q ss_pred HhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 116 RAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
...+.+.+..++++++|++|+|++.+++.|.+.+..++.++++|.+...++.++||+||||||||++|+++|++++.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 4 VQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp HHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 34555677788899999999999999999999999988888888765566789999999999999999999999999999
Q ss_pred EEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC--CCceEE
Q 042771 196 SISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN--DQKVLV 273 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~~v~v 273 (436)
.+++.++...+.+.....++.+|..+....|+||||||+|.+...+... .......+.+.|+..+++.... ..+++|
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~~v~v 162 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNPDGDRIVV 162 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEE
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 9999999999999999999999999999999999999999998776432 2334567778889888876432 246899
Q ss_pred EeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHH
Q 042771 274 LAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 274 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~ 353 (436)
|++||.++.+++++++||+..++++.|+.++|..|++.++......+++.++..|+..+.||+++||..+|++|++.+++
T Consensus 163 i~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r 242 (297)
T 3b9p_A 163 LAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIR 242 (297)
T ss_dssp EEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHH
T ss_pred EeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998777677899999999999999999999999999999998
Q ss_pred hhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhC
Q 042771 354 KTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFG 433 (436)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~ 433 (436)
+...... ..+. ......|+.+||..|+..++||++.+++..|++|.++||
T Consensus 243 ~~~~~~~------------------------~~~~------~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~ 292 (297)
T 3b9p_A 243 ELNVEQV------------------------KCLD------ISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292 (297)
T ss_dssp TCC--------------------------------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC----
T ss_pred HHhhhhc------------------------cccc------ccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 7642100 0000 001157999999999999999999999999999999999
Q ss_pred CC
Q 042771 434 EE 435 (436)
Q Consensus 434 ~~ 435 (436)
+.
T Consensus 293 ~~ 294 (297)
T 3b9p_A 293 DI 294 (297)
T ss_dssp --
T ss_pred Ce
Confidence 63
No 15
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4.5e-42 Score=360.41 Aligned_cols=279 Identities=33% Similarity=0.589 Sum_probs=241.6
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
..|.++|+||+|++++++.|++.+.+|+.+|++|.. +..++++||||||||||||+||+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 468899999999999999999999999999999998 6788899999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 284 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~ 284 (436)
+|.|+++..++.+|..|+...|+||||||||.|++.+... ..+..++++++|+..|+++.. ..+|+||++||.++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~-~~~~~~riv~~LL~~mdg~~~-~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTC-CCTTHHHHHHHHHTHHHHCCG-GGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCC-CChHHHHHHHHHHHHHhcccc-cCCEEEEEecCChhhcC
Confidence 9999999999999999999999999999999999988654 456678899999999999854 45799999999999999
Q ss_pred HHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhh
Q 042771 285 QAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFF 362 (436)
Q Consensus 285 ~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~ 362 (436)
++++| ||++.|+++.|+.++|.+||+.++...... ++.++..||..|.||+++||..+|++|.+.++++........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999 999999999999999999999999876654 677899999999999999999999999999999876431110
Q ss_pred hhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC-----------CCCHHHHHHHHHHHHH
Q 042771 363 KTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP-----------TVSKSDLEVQERFTKE 431 (436)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p-----------s~s~~~~~~y~~~~~~ 431 (436)
. .. . ....+. ...|+.+||..|+..++| .++|+++..+++..++
T Consensus 434 ~--~~--------~------~~e~~~---------~~~v~~~Df~~Al~~~~ps~~r~~~~~~p~v~w~diggl~~~k~~ 488 (806)
T 3cf2_A 434 D--ET--------I------DAEVMN---------SLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGLEDVKRE 488 (806)
T ss_dssp C--CC--------C------SHHHHH---------HCEECTTHHHHHHSSSSCCCCCCCCCBCCCCCSTTCCSCHHHHHH
T ss_pred c--cc--------c------chhhhc---------cceeeHHHHHHHHHhCCCcccccccccCCCCCHHHhCCHHHHHHH
Confidence 0 00 0 000001 157999999999999875 4677887777777665
Q ss_pred h
Q 042771 432 F 432 (436)
Q Consensus 432 ~ 432 (436)
.
T Consensus 489 l 489 (806)
T 3cf2_A 489 L 489 (806)
T ss_dssp H
T ss_pred H
Confidence 3
No 16
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=9.5e-40 Score=322.97 Aligned_cols=287 Identities=46% Similarity=0.729 Sum_probs=237.8
Q ss_pred hhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 118 GLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.+...+...+++++|++|+|++.+++.|.+++..++.++++|.....+++++||+||||||||++|+++|++++.+|+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 100 LIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp TGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred HHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 45556778889999999999999999999999998888888877666778999999999999999999999999999999
Q ss_pred eccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC-CCceEEEec
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-DQKVLVLAA 276 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v~vi~t 276 (436)
++.++.+.+.|.....+..+|..+....|+||||||||.|+..+... ......+++..|+..+++.... ..+++||++
T Consensus 180 ~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~a 258 (389)
T 3vfd_A 180 SAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG-EHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258 (389)
T ss_dssp CSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEE
T ss_pred eHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc-cchHHHHHHHHHHHHhhcccccCCCCEEEEEe
Confidence 99999999999999999999999999999999999999998766433 3445678888999999876542 457999999
Q ss_pred cCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 277 TNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 277 tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
||.++.+++++++||...++++.|+.++|..||+.++......+++.++..|+..+.||++++|..+|+.|+..++++..
T Consensus 259 tn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~ 338 (389)
T 3vfd_A 259 TNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELK 338 (389)
T ss_dssp ESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSC
T ss_pred cCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998999999999999999999998888888999999999999999999999999999999998764
Q ss_pred hhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCC
Q 042771 357 DAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEE 435 (436)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~ 435 (436)
..... .+. ......|+.+||..++..++|+++.+.++.|++|.++||+.
T Consensus 339 ~~~~~------------------------~~~------~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 339 PEQVK------------------------NMS------ASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp CC---------------------------CCS------SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred hhhhh------------------------ccc------hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 31000 000 00115799999999999999999999999999999999975
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=297.92 Aligned_cols=264 Identities=34% Similarity=0.577 Sum_probs=206.2
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
..|.++|+||+|++++|+.|.+.+..|+.++..+.. +..++++++|+||||||||+|++++|.+++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 468899999999999999999999999999998886 5566688999999999999999999999999999999999988
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 284 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~ 284 (436)
.+.++.+..+..+|..+....|+++|+||+|.+...+... ......++.+.++..|++.. ....++++++||.|+.+|
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~-~~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLE-ARQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCC-STTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhccc-ccCCEEEEeecCChhhCC
Confidence 8889999999999999988899999999999987654322 22233467788999999873 345688999999999999
Q ss_pred HHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCC--CCCChhhHHHHHHHc--CCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 285 QAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTP--HNLTESDFESLARKT--EGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 285 ~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~--~~~~~~~~~~la~~t--~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
++++| ||++.|+++.|+.++|.+||+.++.... ....+.++..|+..+ +||+|+||..+|++|++.++++....
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 9999999999999999999999986422 122467899999874 59999999999999999999876421
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHH
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDL 422 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~ 422 (436)
... .. .....+|+.+||..|+++++||++.+++
T Consensus 241 ~~~---------------------------~~----~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 241 QKS---------------------------GN----EKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ----------------------------------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccc---------------------------cc----cccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 000 00 0011579999999999999999998875
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.2e-35 Score=278.37 Aligned_cols=269 Identities=36% Similarity=0.619 Sum_probs=217.2
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
....|+++|++|+|++.+++.|.+++..++..++.+.. +..++.++||+||||||||++|+++|+.++.+++.+++.++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 35678899999999999999999999998888888876 55677899999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC--chHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE--SEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
...+.+.....+..+|..+....|+||||||+|.+.+.+..... .......+..++..+++.. ...+++||+|||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD-ARGDVKIIGATNRP 166 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC-SSSSEEEEEECSCG
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC-CCCCEEEEEeCCCc
Confidence 99999999999999999999999999999999999877654311 2234556667777777653 34579999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.+++++++ ||+..+.++.|+.++|.+|++.++...... .+.++..|+..+.|++++||..+|+.|...++.+..
T Consensus 167 ~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~-- 243 (285)
T 3h4m_A 167 DILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELR-- 243 (285)
T ss_dssp GGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--
Confidence 999999999 999999999999999999999998776543 566799999999999999999999999999887653
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHhCCCC
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT--VSKSDLEVQERFTKEFGEEG 436 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps--~s~~~~~~y~~~~~~~~~~~ 436 (436)
..|+.+||.+|+..+.+. .+...-..|..|...||+.|
T Consensus 244 ----------------------------------------~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 244 ----------------------------------------DYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp ----------------------------------------SSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred ----------------------------------------CcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 479999999999887532 44455688999999999865
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=100.00 E-value=1.1e-35 Score=299.61 Aligned_cols=275 Identities=33% Similarity=0.593 Sum_probs=221.7
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
+.++|++|+|++.+++.|.+++..++.++++|.. +..++.++||+||||||||++|++++++++.+|+.++|.++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 5678999999999999999999999999999887 567778999999999999999999999999999999999999999
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
.|+....++.+|..+....|++|||||||.|.+.+... .......++..|+..|++.. ...+++||+|||.++.++++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~-~~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSC-TTSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhccc-cCCceEEEEecCCccccCHH
Confidence 99999999999999999999999999999999877543 45677889999999999773 34579999999999999999
Q ss_pred HHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhh
Q 042771 287 IRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKT 364 (436)
Q Consensus 287 l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~ 364 (436)
+++ ||+..++++.|+.++|.+||+.++...... .+.++..++..+.||+++||..+|++|++.++++.......
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~--- 432 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDL--- 432 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCT---
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhccccccc---
Confidence 999 999999999999999999999998876654 56689999999999999999999999999999886532100
Q ss_pred cCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCC-----------CCCCHHHHHHHHHHHH
Q 042771 365 SNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQR-----------PTVSKSDLEVQERFTK 430 (436)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~-----------ps~s~~~~~~y~~~~~ 430 (436)
...... .... .. ..|+.+||..|++.++ |+++|+|+..|--.++
T Consensus 433 --------~~~~~~-----~~~~-----~~----~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~~~~ 487 (489)
T 3hu3_A 433 --------EDETID-----AEVM-----NS----LAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSHHHH 487 (489)
T ss_dssp --------TCSSCC-----HHHH-----HH----CCBCHHHHHHHHTSHHHHHHHGGGC------------------
T ss_pred --------cccccc-----hhhc-----cc----CcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCccccc
Confidence 000000 0000 11 5799999999988764 8899999999876554
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=8.3e-38 Score=333.76 Aligned_cols=293 Identities=36% Similarity=0.635 Sum_probs=215.4
Q ss_pred cccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 124 IREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 124 ~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
....+.++|++++|++.+++.|.+++.+++.++..|.. +..++.++||+||||||||+||+++|++++.+++.++++++
T Consensus 468 ~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l 547 (806)
T 1ypw_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSS
T ss_pred cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHh
Confidence 34568899999999999999999999999998888776 55677899999999999999999999999999999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
.+.|+|+.+..++.+|..++...|+||||||||.++..+.... ......++++.|+..|++.. ...+++||+|||.+
T Consensus 548 ~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-~~~~v~vI~tTN~~ 626 (806)
T 1ypw_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-TKKNVFIIGATNRP 626 (806)
T ss_dssp TTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCCCCBSC
T ss_pred hhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-ccCCeEEEEecCCc
Confidence 9999999999999999999999999999999999988775432 23467889999999999874 34579999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.+|++++| ||+..++++.|+.++|..||+.++...+.. .+.++..|+..+.||+++||..+|++|++.++++....
T Consensus 627 ~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 627 DIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp GGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC---
T ss_pred ccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999 999999999999999999999999876543 56778889999999999999999999999999886432
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHHHHHHHhCCC
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQERFTKEFGEE 435 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~~~~~~~~~~ 435 (436)
...... .....+. . +. .......++|+.+||.+|++.++||+|.++++.|++|.++|+..
T Consensus 706 ~~~~~~-~~~~~~~------~-------~~---~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~~~ 765 (806)
T 1ypw_A 706 EIRRER-ERQTNPS------A-------ME---VEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp --------------------------------------CCTTTTTTSSCCCCCC-----------------------
T ss_pred HHhhhh-hhccccc------c-------cc---cccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhh
Confidence 110000 0000000 0 00 00011126899999999999999999999999999999987643
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=6.1e-34 Score=284.59 Aligned_cols=244 Identities=37% Similarity=0.627 Sum_probs=208.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
.+.++|+||+|++++++.|.+.+.. +..+..|.. +...++++||+||||||||+||+++|++++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 6789999999999999999998865 445566655 55667899999999999999999999999999999999999999
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 283 (436)
+.|.....++.+|..+....|+||||||+|.+...++.. +.......+++.|+..|+++.. ..+++||++||.++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhh
Confidence 999999999999999999999999999999998776431 1233456778999999997643 4579999999999999
Q ss_pred cHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhh
Q 042771 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361 (436)
Q Consensus 284 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~ 361 (436)
+++++| ||+..+.++.|+.++|.+|++.++...+.. ++.++..|+..+.||+++||..+|++|++.+.++..
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~----- 241 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGR----- 241 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-----
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCC-----
Confidence 999998 999999999999999999999999876543 566799999999999999999999999988775432
Q ss_pred hhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 362 FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
..|+.+||..|+.++.+
T Consensus 242 -------------------------------------~~I~~~dl~~al~~v~~ 258 (476)
T 2ce7_A 242 -------------------------------------DKITMKDFEEAIDRVIA 258 (476)
T ss_dssp -------------------------------------SSBCHHHHHHHHHHHC-
T ss_pred -------------------------------------CeecHHHHHHHHHHHhc
Confidence 47999999999988754
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=100.00 E-value=2e-33 Score=262.00 Aligned_cols=248 Identities=36% Similarity=0.615 Sum_probs=208.5
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+....++.+|++|+|++.+++.|.+.+.. +..+..+.. +...+.+++|+||||||||++|+++|+.++.+++.+++.+
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 45677899999999999999999987765 445555554 4456688999999999999999999999999999999999
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+...+.+.....++.+|..+....|+++||||+|.+...+... .........++.++..+++.. ...+++||++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-~~~~~~vI~~tn~ 159 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-GNEGIIVIAATNR 159 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-SSSCEEEEEEESC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-cCCCEEEEEeeCC
Confidence 9888888888999999999998889999999999998765432 122334567888999998764 3456899999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
++.+++++++ ||+..+.++.|+.++|.+|++.++...+.. ++.++..++..+.||+++||..+|++|...+..+..
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~- 237 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGNK- 237 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC-
Confidence 9999999998 999999999999999999999998775543 466788999999999999999999999988876543
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
..|+.+||..|+..+..
T Consensus 238 -----------------------------------------~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 238 -----------------------------------------RVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp -----------------------------------------SSBCHHHHHHHHHHHTT
T ss_pred -----------------------------------------CcccHHHHHHHHHHHhc
Confidence 57999999999988754
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=262.99 Aligned_cols=245 Identities=35% Similarity=0.545 Sum_probs=189.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKW 206 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~ 206 (436)
|+++|++|+|++.+++.|.+.+.. +..++.|.. +..+++++||+||||||||++|+++|++++.+++.+++.++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 578999999999999999998765 444555543 456678999999999999999999999999999999999998888
Q ss_pred hchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC---CchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc
Q 042771 207 MGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN---ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 283 (436)
.+.....+..+|..+....|+||||||+|.+...+.... ........+..++..+++.. ...+++||++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-TTCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-CCCCEEEEecCCChhhc
Confidence 888889999999999988899999999999976653211 01223455677888888763 34578999999999999
Q ss_pred cHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChh-hHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhh
Q 042771 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTES-DFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMF 360 (436)
Q Consensus 284 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~-~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~ 360 (436)
++++++ ||+..++++.|+.++|.+|++.++.......+.. .+..|+..+.||++++|..+|+.|+..+.++..
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~---- 234 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH---- 234 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 999999 9999999999999999999999987766554443 458899999999999999999999988876543
Q ss_pred hhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 361 FFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
..|+.+||..|+..+.++
T Consensus 235 --------------------------------------~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 235 --------------------------------------TSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ----------------------------------------CCBCCHHHHHHHHHHH
T ss_pred --------------------------------------CCCCHHHHHHHHHHhccC
Confidence 468889999998877554
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=9.8e-32 Score=270.18 Aligned_cols=245 Identities=37% Similarity=0.616 Sum_probs=207.7
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK 205 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~ 205 (436)
.+.++|+||+|+++++..|.+.+.. +..+..+.. +...++++||+||||||||+||+++|.+++.+++.+++.++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3899999999999999999998765 444555554 45566889999999999999999999999999999999999888
Q ss_pred hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcc
Q 042771 206 WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYAL 283 (436)
Q Consensus 206 ~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l 283 (436)
+.+.....++.+|+.+....|+|+||||||.+...+... .........++.++..|++.. ....++++++||.|+.+
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-~~~~viviAatn~p~~L 182 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAATNRPDIL 182 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-SSCCCEEEECCSCGGGS
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-cCccEEEEEecCChhhc
Confidence 888888889999999887889999999999997765421 123455677889999999874 34568999999999999
Q ss_pred cHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhh
Q 042771 284 DQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF 361 (436)
Q Consensus 284 ~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~ 361 (436)
|++++| ||+..+.++.|+.++|.+||+.++...+.. ++.++..|+..+.||+++||..+|++|++.+.++..
T Consensus 183 D~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~----- 256 (499)
T 2dhr_A 183 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREGR----- 256 (499)
T ss_dssp CTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCC-----
T ss_pred CcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCC-----
Confidence 999998 899999999999999999999988765432 466799999999999999999999999987765432
Q ss_pred hhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 362 FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
..|+.+||.+|+.++.+.
T Consensus 257 -------------------------------------~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 257 -------------------------------------RKITMKDLEEAADRVMML 274 (499)
T ss_dssp -------------------------------------SSCCSHHHHHHHHHHTTC
T ss_pred -------------------------------------CccCHHHHHHHHHHHhcc
Confidence 479999999999987654
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.98 E-value=6.3e-31 Score=244.69 Aligned_cols=230 Identities=39% Similarity=0.648 Sum_probs=187.3
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+....|.++|++++|+++++..+...+... ..+..+.. +...+++++|+||||||||+|++++++.++..++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 456778999999999999999999877653 33444443 4455678999999999999999999999999999999998
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+...+.+.....+..+|+.+....|++++|||+|.+...+... .........++.++..+++.. ....++++++||.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~-~~~~~i~~a~t~~ 163 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAATNR 163 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC-TTCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC-CCCCEEEEEccCC
Confidence 8877777777888999999887789999999999987655321 123345667788888998763 3445888999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|+.+|++++| ||+..+.++.|+.++|.+||+.++...... ++.++..|+..+.||+++||..+|++|...+.++.
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~ 240 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999998 899999999999999999999988765432 46679999999999999999999999998876643
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.97 E-value=4.6e-34 Score=268.02 Aligned_cols=253 Identities=35% Similarity=0.608 Sum_probs=204.4
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
.+.|+++|++|+|++.+++.|.+.+.. +..++.|.. +...++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 467889999999999999999998765 556666654 556668899999999999999999999999999999999988
Q ss_pred hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC---CchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 204 SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN---ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 204 ~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~---~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
..+.+.....++.+|..+....|+||||||+|.|...+..+. ........++.|+..+++......+++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 888777666777889999888899999999999976542210 01111234566777777765555669999999999
Q ss_pred CcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhh
Q 042771 281 YALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDA 358 (436)
Q Consensus 281 ~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~ 358 (436)
+.+++++++ ||+..+.++.|+.++|.++|+.++...... ++.++..|+..+.||+++||..+|+.|...+..+..
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~~-- 238 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRNNQ-- 238 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSCC--
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--
Confidence 999999999 999999999999999999999998765443 456688899999999999999999999987654321
Q ss_pred hhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHH
Q 042771 359 MFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSD 421 (436)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~ 421 (436)
..|+.+||.+|+..+.|+...+.
T Consensus 239 ----------------------------------------~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 239 ----------------------------------------KEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp ----------------------------------------CSCCHHHHHTSCTTCCCCCC---
T ss_pred ----------------------------------------CCcCHHHHHHHHHHHhhcchhhh
Confidence 57999999999999999876543
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.97 E-value=8.1e-30 Score=240.37 Aligned_cols=230 Identities=39% Similarity=0.648 Sum_probs=186.6
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+....|+++|++|+|++++++.+...+... ..+..+.. ....+.+++|+||||||||+|+++++..++..++.+++.+
T Consensus 30 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~ 108 (278)
T 1iy2_A 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 108 (278)
T ss_dssp CBCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH
Confidence 345568999999999999999999877543 33444443 4455577999999999999999999999999999999998
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCC--CCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEG--NESEASRRIKTELLVQMQGVGHNDQKVLVLAATNT 279 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~--~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~ 279 (436)
+...+.+.....+..+|+.+....|++++|||+|.+...+... .........+..++..+++.. ....++++++||.
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~-~~~~~i~~a~t~~ 187 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-KDTAIVVMAATNR 187 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC-TTCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC-CCCCEEEEEecCC
Confidence 8777777777888999999988889999999999887654321 122344566778888888763 3445888999999
Q ss_pred CCcccHHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhh
Q 042771 280 PYALDQAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKT 355 (436)
Q Consensus 280 ~~~l~~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~ 355 (436)
|+.+|+++++ ||+..+.++.|+.++|.+||+.++...... ++.++..++..+.|++++||..+|++|...+.++.
T Consensus 188 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~ 264 (278)
T 1iy2_A 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 264 (278)
T ss_dssp TTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999998 899999999999999999999988765432 45679999999999999999999999998776543
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=4.3e-28 Score=258.89 Aligned_cols=228 Identities=37% Similarity=0.663 Sum_probs=205.5
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcC-CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
..+.++|+||+|++.+++.|.+++..++.++++|.. ...++.++||+||||||||+||+++|+.++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 456799999999999999999999999999999987 5677789999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc
Q 042771 205 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD 284 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~ 284 (436)
.+.++....++.+|..+....|+++||||+|.++..+... ......++...|+..+++... ...+++|++||.++.++
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~-~~~~~~~~~~~Ll~ll~g~~~-~~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQ-RAHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCC-CSHHHHHHHHHHHHHHHSSCT-TSCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccc-cchHHHHHHHHHHHHhhhhcc-cccEEEecccCCchhcC
Confidence 9999999999999999999999999999999998876543 456678888999999998743 45789999999999999
Q ss_pred HHHHh--hccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 285 QAIRR--RFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 285 ~~l~~--Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+++++ ||+..+.++.|+.++|.+||+.++...... .+.++..++..+.||+++++..++++|.+.++++..
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~ 427 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKM 427 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhc
Confidence 99998 999999999999999999999988766543 566789999999999999999999999998887654
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.93 E-value=3e-26 Score=217.28 Aligned_cols=174 Identities=19% Similarity=0.286 Sum_probs=131.8
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHH----HhcCCeEEEEcccccc
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMA----RESAPSIIFIDEIDSL 237 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~~~~p~il~iDeid~l 237 (436)
+..++.++|||||||||||+||+++|++++.+++.++++++.+.+.|.....++.+|..+ +...|+||||||||.+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~ 111 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAG 111 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhh
Confidence 445668999999999999999999999999999999999999999999999999999988 5778999999999999
Q ss_pred ccCCCCCC-CchHHHHHHHHHHHHhhcCC----------CCCCceEEEeccCCCCcccHHHHh--hccceEEcCCCCHHH
Q 042771 238 CGQRGEGN-ESEASRRIKTELLVQMQGVG----------HNDQKVLVLAATNTPYALDQAIRR--RFDKRIYIPLPDLKA 304 (436)
Q Consensus 238 ~~~~~~~~-~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~~~p~~~~ 304 (436)
.+...... .......+.+.|+..+++.. ....+++||+|||.++.++++++| ||+..++ .|+.++
T Consensus 112 ~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~ 189 (293)
T 3t15_A 112 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 189 (293)
T ss_dssp ------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHH
T ss_pred cCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHH
Confidence 87543221 11234567788888887442 134579999999999999999997 9988776 479999
Q ss_pred HHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 042771 305 RQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISV 342 (436)
Q Consensus 305 r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~ 342 (436)
|.+|++.++.... .++..++..+.||++++|..
T Consensus 190 r~~Il~~~~~~~~-----~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 190 RIGVCTGIFRTDN-----VPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHHGGGC-----CCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHHhccCCC-----CCHHHHHHHhCCCCcccHHH
Confidence 9999999886433 24667778888888887753
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.91 E-value=8.1e-24 Score=207.29 Aligned_cols=235 Identities=17% Similarity=0.214 Sum_probs=169.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC--ceEEEeccchhhh
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSSDLVSK 205 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~~l~~~ 205 (436)
|..+|++++|++.+++.+..+... +..+..+++++||+||||||||++|+++|+.++. +++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~-------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEM-------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHH-------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 444599999999999987665532 2223445689999999999999999999999875 7888887664333
Q ss_pred hhch-------------------------------------------------HHHHHHHHHHHHHh-----c----CCe
Q 042771 206 WMGE-------------------------------------------------SEKLVSSLFQMARE-----S----APS 227 (436)
Q Consensus 206 ~~g~-------------------------------------------------~~~~~~~~~~~a~~-----~----~p~ 227 (436)
+.+. ....++..+..+.. . .|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 2221 12223333333322 1 267
Q ss_pred EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc-----------CCCCcccHHHHhhccceEE
Q 042771 228 IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT-----------NTPYALDQAIRRRFDKRIY 296 (436)
Q Consensus 228 il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt-----------n~~~~l~~~l~~Rf~~~i~ 296 (436)
||||||+|.+. ....+.|+..++.. ...++++++. |.+..+++++++||.. +.
T Consensus 192 vl~IDEi~~l~------------~~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~ 255 (368)
T 3uk6_A 192 VLFIDEVHMLD------------IESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VS 255 (368)
T ss_dssp EEEEESGGGSB------------HHHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EE
T ss_pred eEEEhhccccC------------hHHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EE
Confidence 99999999883 34466777777643 2334444443 3578899999999965 89
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCC
Q 042771 297 IPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQ 376 (436)
Q Consensus 297 ~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (436)
|++|+.+++..+++..+......++++.+..|+..+.+.+++++..+|+.|...+..+..
T Consensus 256 ~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~-------------------- 315 (368)
T 3uk6_A 256 TTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKG-------------------- 315 (368)
T ss_dssp ECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCC--------------------
Confidence 999999999999999988777778999999999999866999999999999988765442
Q ss_pred chhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC-CCCCCHHHHHHHHH
Q 042771 377 SGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ-RPTVSKSDLEVQER 427 (436)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~-~ps~s~~~~~~y~~ 427 (436)
..|+.+|+.+|+..+ ....+.+.++.|++
T Consensus 316 ----------------------~~It~~~v~~a~~~~~~~~~~~~~~~~~~~ 345 (368)
T 3uk6_A 316 ----------------------TEVQVDDIKRVYSLFLDESRSTQYMKEYQD 345 (368)
T ss_dssp ----------------------SSBCHHHHHHHHHHSBCHHHHHHHHC----
T ss_pred ----------------------CCCCHHHHHHHHHHhcCHHHHHHHHHHhhh
Confidence 579999999999874 33334444554443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.90 E-value=3.5e-23 Score=208.21 Aligned_cols=232 Identities=20% Similarity=0.218 Sum_probs=178.9
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC--CceEEEeccchhh
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD--STFFSISSSDLVS 204 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~--~~~~~v~~~~l~~ 204 (436)
.|...|++++|++++++.+..++.. +..+..+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 3556799999999999999887743 233455678999999999999999999999999 9999999999999
Q ss_pred hhhchHHHHHHHHHHHH---HhcCCeEEEEccccccccCCCCCCCch---------------------------------
Q 042771 205 KWMGESEKLVSSLFQMA---RESAPSIIFIDEIDSLCGQRGEGNESE--------------------------------- 248 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a---~~~~p~il~iDeid~l~~~~~~~~~~~--------------------------------- 248 (436)
.+.++++. +..+|..+ +...|+||||||+|.+++.+.......
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999887 89999998 778899999999999886543220000
Q ss_pred --------------------------------------------------------------------------------
Q 042771 249 -------------------------------------------------------------------------------- 248 (436)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (436)
T Consensus 183 ~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~ 262 (456)
T 2c9o_A 183 ERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQ 262 (456)
T ss_dssp TTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC---------------
T ss_pred ccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhh
Confidence
Q ss_pred --------------------------------------------HHHHHHHHHHHHhhcCCCCCCceEEEec--------
Q 042771 249 --------------------------------------------ASRRIKTELLVQMQGVGHNDQKVLVLAA-------- 276 (436)
Q Consensus 249 --------------------------------------------~~~~~~~~ll~~l~~~~~~~~~v~vi~t-------- 276 (436)
......+.|+..|+. +...++|+++
T Consensus 263 i~~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe---~~~~~~il~tn~~~~~i~ 339 (456)
T 2c9o_A 263 LMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALES---SIAPIVIFASNRGNCVIR 339 (456)
T ss_dssp --------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTS---TTCCEEEEEECCSEEECB
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhc---cCCCEEEEecCCcccccc
Confidence 001233445555542 2334544455
Q ss_pred -cC---CCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHc-CCCCHHHHHHHHHHHhhhH
Q 042771 277 -TN---TPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKT-EGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 277 -tn---~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t-~g~s~~dl~~l~~~a~~~a 351 (436)
++ .+..+++.+++||.. +.|++|+.++..++++..+......++++.+..++..+ .| +++....+++.|...|
T Consensus 340 ~~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A 417 (456)
T 2c9o_A 340 GTEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLA 417 (456)
T ss_dssp TTSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHH
T ss_pred ccccccccccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 32 267899999999965 69999999999999998876556667899999999988 65 7888888888887666
Q ss_pred HHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhC
Q 042771 352 VRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQ 413 (436)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~ 413 (436)
..+.. ..|+.+|+.+|+..+
T Consensus 418 ~~~~~------------------------------------------~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 418 KINGK------------------------------------------DSIEKEHVEEISELF 437 (456)
T ss_dssp HHTTC------------------------------------------SSBCHHHHHHHHHHS
T ss_pred hhcCC------------------------------------------CccCHHHHHHHHHHh
Confidence 55432 479999999999887
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.90 E-value=2.8e-23 Score=198.53 Aligned_cols=213 Identities=19% Similarity=0.235 Sum_probs=170.5
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHHHHHc-------CCceEEEeccch
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVATEA-------DSTFFSISSSDL 202 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia~~l-------~~~~~~v~~~~l 202 (436)
+|+|++.+++.|.+++..+.. +..+.. ...+..++||+||||||||++|+++|+.+ ..+++.+++.++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998865432 222211 23445689999999999999999999987 348999999999
Q ss_pred hhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC-
Q 042771 203 VSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY- 281 (436)
Q Consensus 203 ~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~- 281 (436)
.+.+.|.....+..+|..+ .++||||||+|.|...+.. ......+++.|+..++.. ..+++||+++|.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~~ 181 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENN---RDDLVVILAGYADRM 181 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHHH
T ss_pred hhhcccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhcC---CCCEEEEEeCChHHH
Confidence 9999998888888888876 4579999999999765432 223456778888888753 45678888887653
Q ss_pred ----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHhhh
Q 042771 282 ----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARK-------TEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 282 ----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~-------t~g~s~~dl~~l~~~a~~~ 350 (436)
.+++++++||+..+.|+.|+.+++..|++.++......+++..+..++.. ....+++++..+++.+...
T Consensus 182 ~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~ 261 (309)
T 3syl_A 182 ENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLR 261 (309)
T ss_dssp HHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999887778899999999887 3444689999999999987
Q ss_pred HHHhhh
Q 042771 351 PVRKTQ 356 (436)
Q Consensus 351 a~~~~~ 356 (436)
+..+..
T Consensus 262 ~~~r~~ 267 (309)
T 3syl_A 262 QANRLF 267 (309)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.89 E-value=6.3e-22 Score=191.57 Aligned_cols=203 Identities=18% Similarity=0.194 Sum_probs=155.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.+..++.+.+|++++|++.+++.|..++..... ...+..++||+||||||||++|+++++.++.+|+.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 355677788999999999999999988864321 1234568999999999999999999999999999999876
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---------------
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------------- 266 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------- 266 (436)
+.. ...+..++.. ...+++|||||||.+. ......|+..++....
T Consensus 91 ~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~------------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 91 IEK------SGDLAAILTN--LSEGDILFIDEIHRLS------------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp CCS------HHHHHHHHHT--CCTTCEEEEETGGGCC------------HHHHHHHHHHHHTSCC---------CCCCCC
T ss_pred ccc------hhHHHHHHHh--ccCCCEEEEechhhcC------------HHHHHHHHHHHHhccchhhcccCccccceec
Confidence 532 1223333332 3466899999999883 2345566666654310
Q ss_pred CCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 267 NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 267 ~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
..+++.+|++||....+++++++||+..+.+++|+.+++..+++.++......++++.+..|+..+.| +++.+..+++.
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~ 229 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKR 229 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHH
Confidence 11248899999999999999999999999999999999999999998877777789999999996654 77888888888
Q ss_pred HhhhHH
Q 042771 347 VLFEPV 352 (436)
Q Consensus 347 a~~~a~ 352 (436)
+...+.
T Consensus 230 ~~~~a~ 235 (338)
T 3pfi_A 230 VRDFAD 235 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765543
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.89 E-value=1.7e-22 Score=192.90 Aligned_cols=220 Identities=17% Similarity=0.300 Sum_probs=158.4
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcC--CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhch
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTG--KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMGE 209 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~--~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g~ 209 (436)
++|+|++.+++.|...+..++.+..+... ....+.++||+||||||||++|+++++.++.+++.+++..+.. .+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 34899999999999888653222221111 1134578999999999999999999999999999999998765 44443
Q ss_pred -HHHHHHHHHHHH-----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-------CCCceEEEec
Q 042771 210 -SEKLVSSLFQMA-----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH-------NDQKVLVLAA 276 (436)
Q Consensus 210 -~~~~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~v~vi~t 276 (436)
....+..++..+ ....++||||||+|.+...............+.+.|+..+++... ...++++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 234455555422 112357999999999987654332333334457788888885411 2345778877
Q ss_pred ----cCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHh-------------CCCCCCCChhhHHHHHHHcC------
Q 042771 277 ----TNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHL-------------GDTPHNLTESDFESLARKTE------ 333 (436)
Q Consensus 277 ----tn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l-------------~~~~~~~~~~~~~~la~~t~------ 333 (436)
++.+..+++++++||+..+.|++|+.+++..|++... ......++++.++.|+..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 5678899999999999889999999999999998421 22233578999999998873
Q ss_pred -CCCHHHHHHHHHHHhhhHH
Q 042771 334 -GFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 334 -g~s~~dl~~l~~~a~~~a~ 352 (436)
+.+.+.+..+++.++..+.
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~ 274 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKIS 274 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHH
T ss_pred cccCcHHHHHHHHHHHHhhh
Confidence 4678899999988876544
No 35
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.88 E-value=2.8e-21 Score=185.84 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=151.9
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS 204 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~ 204 (436)
.++.+.+|++++|.+.+++.|...+.... ....++.++||+||||||||++|+++++.++.+++.+++..+..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~-------~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAK-------ARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHH-------HHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHH-------ccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 35677799999999999999988775321 11123468999999999999999999999999999999876532
Q ss_pred hhhchHHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---------------C
Q 042771 205 KWMGESEKLVSSLFQMARE--SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH---------------N 267 (436)
Q Consensus 205 ~~~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---------------~ 267 (436)
.. .++..... ..+++|||||+|.+.. .....|+..++.... .
T Consensus 77 ------~~---~l~~~l~~~~~~~~~l~lDEi~~l~~------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~ 135 (324)
T 1hqc_A 77 ------PG---DLAAILANSLEEGDILFIDEIHRLSR------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLE 135 (324)
T ss_dssp ------HH---HHHHHHTTTCCTTCEEEETTTTSCCH------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEE
T ss_pred ------hH---HHHHHHHHhccCCCEEEEECCccccc------------chHHHHHHHHHhhhhHHhccccccccccccC
Confidence 11 22222222 4668999999998731 224445555553210 1
Q ss_pred CCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 268 DQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 268 ~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
..++.+|++||.+..+++++++||...+.+++|+.+++..++..++......++++.+..|+..+.| +++.+..+++.+
T Consensus 136 ~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~ 214 (324)
T 1hqc_A 136 LPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRV 214 (324)
T ss_dssp CCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 1357899999999999999999998899999999999999999998877777899999999999866 678888888887
Q ss_pred hhhH
Q 042771 348 LFEP 351 (436)
Q Consensus 348 ~~~a 351 (436)
...+
T Consensus 215 ~~~a 218 (324)
T 1hqc_A 215 RDFA 218 (324)
T ss_dssp TTTS
T ss_pred HHHH
Confidence 6554
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.87 E-value=8.3e-21 Score=187.05 Aligned_cols=253 Identities=19% Similarity=0.286 Sum_probs=180.9
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCC--CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-hhhch
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGK--RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS-KWMGE 209 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~--~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~-~~~g~ 209 (436)
++|+|++++|+.|..++..+..++.++... ..+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 358999999999999998776666655442 235689999999999999999999999999999999988877 47774
Q ss_pred -HHHHHHHHHHHHH------------------------------------------------------------------
Q 042771 210 -SEKLVSSLFQMAR------------------------------------------------------------------ 222 (436)
Q Consensus 210 -~~~~~~~~~~~a~------------------------------------------------------------------ 222 (436)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 5666665554330
Q ss_pred ------------------------------------------------------------------------hc-CCeEE
Q 042771 223 ------------------------------------------------------------------------ES-APSII 229 (436)
Q Consensus 223 ------------------------------------------------------------------------~~-~p~il 229 (436)
.. ..+||
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 00 12489
Q ss_pred EEccccccccCCCCCCCchHH-HHHHHHHHHHhhcCC-------CCCCceEEEecc----CCCCcccHHHHhhccceEEc
Q 042771 230 FIDEIDSLCGQRGEGNESEAS-RRIKTELLVQMQGVG-------HNDQKVLVLAAT----NTPYALDQAIRRRFDKRIYI 297 (436)
Q Consensus 230 ~iDeid~l~~~~~~~~~~~~~-~~~~~~ll~~l~~~~-------~~~~~v~vi~tt----n~~~~l~~~l~~Rf~~~i~~ 297 (436)
++||||.+....... ..+.+ .-++..||..+++.. ....++++|+|. +.|.++.|.|++||+.++.|
T Consensus 255 ~~DEidki~~~~~~~-~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l 333 (444)
T 1g41_A 255 FIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 333 (444)
T ss_dssp EEETGGGGSCCSSCS-SSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEEC
T ss_pred eHHHHHHHhhccCCC-CCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeC
Confidence 999999998664322 23333 347788999999742 134578888886 35556779999999999999
Q ss_pred CCCCHHHHHHHHHH-----------H--hCCCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 298 PLPDLKARQHMFKV-----------H--LGDTPHNLTESDFESLARK-------TEGFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 298 ~~p~~~~r~~il~~-----------~--l~~~~~~~~~~~~~~la~~-------t~g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
+.++.++...|+.. . +......++++.+..|++. |....++-|+.++..++.....+...
T Consensus 334 ~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~~~ 413 (444)
T 1g41_A 334 TALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASD 413 (444)
T ss_dssp CCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhccc
Confidence 99999999999931 1 2344456788888888874 45667778777777766554444321
Q ss_pred hhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHH
Q 042771 358 AMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQ 425 (436)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y 425 (436)
. ......|+.+++.+.+. |.+..+|+.+|
T Consensus 414 ~------------------------------------~~~~~~i~~~~v~~~l~---~~~~~~dl~~~ 442 (444)
T 1g41_A 414 M------------------------------------NGQTVNIDAAYVADALG---EVVENEDLSRF 442 (444)
T ss_dssp C------------------------------------TTCEEEECHHHHHHHHT---TTTTCHHHHHH
T ss_pred c------------------------------------CCCeEEEeHHHHHHhcC---ccccCCChhcc
Confidence 0 00014689998887664 66788888887
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.87 E-value=3.5e-21 Score=192.13 Aligned_cols=191 Identities=18% Similarity=0.264 Sum_probs=142.9
Q ss_pred cccccCCCCccccccCcHHHH---HHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 122 AIIREKPNVKWNDVAGLESAK---QALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k---~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+..+..+.+|++++|++.++ ..|...+... ...++||+||||||||++|+++++.++.+|+.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 455667788999999999999 6777766431 1268999999999999999999999999999998
Q ss_pred ccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEE
Q 042771 199 SSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVL 274 (436)
Q Consensus 199 ~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 274 (436)
+.... ...++.++..+. ...++||||||||.+... .++.|+..++. +.+++|
T Consensus 83 a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~-----~~v~lI 138 (447)
T 3pvs_A 83 AVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED-----GTITFI 138 (447)
T ss_dssp TTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT-----TSCEEE
T ss_pred eccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc-----CceEEE
Confidence 75432 223444444443 356789999999998432 24456777763 335555
Q ss_pred ecc--CCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC-------CCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 042771 275 AAT--NTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD-------TPHNLTESDFESLARKTEGFSGSDISVCVK 345 (436)
Q Consensus 275 ~tt--n~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~-------~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 345 (436)
++| |....+++++++||. ++.|+.|+.+++..+++..+.. ....++++.++.|+..+.| +.+.+..+++
T Consensus 139 ~att~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le 216 (447)
T 3pvs_A 139 GATTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLE 216 (447)
T ss_dssp EEESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred ecCCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 555 445689999999995 7889999999999999998875 4456789999999999776 6777777777
Q ss_pred HHhhh
Q 042771 346 DVLFE 350 (436)
Q Consensus 346 ~a~~~ 350 (436)
.+...
T Consensus 217 ~a~~~ 221 (447)
T 3pvs_A 217 MMADM 221 (447)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76644
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.86 E-value=1.2e-21 Score=200.52 Aligned_cols=209 Identities=20% Similarity=0.253 Sum_probs=145.7
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhh-----
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVS----- 204 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~----- 204 (436)
.-+++++|++.+++.+.+.+....... . .++.+++|+||||||||+||+++|..++.++..+++..+..
T Consensus 78 ~l~~di~G~~~vk~~i~~~~~l~~~~~-----~-~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 78 LLDEEHHGLEKVKERILEYLAVQKLTK-----S-LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp THHHHCSSCHHHHHHHHHHHHHHHHSS-----S-CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHhcc-----c-CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhh
Confidence 346779999999999987765432111 1 14578999999999999999999999999999998876533
Q ss_pred ----hhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC------------CC
Q 042771 205 ----KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH------------ND 268 (436)
Q Consensus 205 ----~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------------~~ 268 (436)
.+.|.....+...|..+....| ||||||+|.+..... ....+.|+..|+.... ..
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~--------~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~ 222 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFR--------GDPSSAMLEVLDPEQNSSFSDHYIEETFDL 222 (543)
T ss_dssp ------------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBC
T ss_pred hHHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhc--------cCHHHHHHHHHhhhhcceeecccCCeeecc
Confidence 4556556666677777655555 999999999965432 1234566666653211 11
Q ss_pred CceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----------CCCCCCChhhHHHHHH-HcCCCCH
Q 042771 269 QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----------DTPHNLTESDFESLAR-KTEGFSG 337 (436)
Q Consensus 269 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----------~~~~~~~~~~~~~la~-~t~g~s~ 337 (436)
.+++||+|||.++.++++|++||. ++.|+.|+.+++..|+..++. .....+++..+..|+. .+...+.
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred cceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 568999999999999999999995 899999999999999998762 1234567888888776 5555677
Q ss_pred HHHHHHHHHHhhhHHHh
Q 042771 338 SDISVCVKDVLFEPVRK 354 (436)
Q Consensus 338 ~dl~~l~~~a~~~a~~~ 354 (436)
++|+..+..++..+..+
T Consensus 302 R~L~~~i~~~~~~aa~~ 318 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKA 318 (543)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88877777766554443
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.85 E-value=9.2e-20 Score=164.72 Aligned_cols=191 Identities=20% Similarity=0.222 Sum_probs=142.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEE
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSI 197 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v 197 (436)
+..++++..|++++|.+.+++.|..++... ...+++|+||||||||++++++++.+ ...++.+
T Consensus 7 ~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~ 74 (226)
T 2chg_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (226)
T ss_dssp HHHHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEE
T ss_pred HHHhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEe
Confidence 456678899999999999999999887541 12359999999999999999999986 4567888
Q ss_pred eccchhhhhhchHHHHHHHHHHHH-H-----hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCce
Q 042771 198 SSSDLVSKWMGESEKLVSSLFQMA-R-----ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKV 271 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~~~~~~~~a-~-----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 271 (436)
++...... ..+...+... . ...+.+|+|||+|.+.. .....|+..++.. ..++
T Consensus 75 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~l~~~l~~~---~~~~ 133 (226)
T 2chg_A 75 NASDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEMY---SKSC 133 (226)
T ss_dssp ETTCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT---TTTE
T ss_pred ccccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------HHHHHHHHHHHhc---CCCC
Confidence 87654321 1122222222 1 24678999999998732 2244556666542 3467
Q ss_pred EEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 272 LVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 272 ~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
.+|+++|.+..+++++.+||. .+.+++|+.++...++..++......+++..+..|+..+.| +++.+..+++.++
T Consensus 134 ~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~ 208 (226)
T 2chg_A 134 RFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (226)
T ss_dssp EEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred eEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 888899999999999999997 89999999999999999988665666788899999988876 5666666655554
No 40
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.85 E-value=1e-20 Score=184.85 Aligned_cols=222 Identities=20% Similarity=0.290 Sum_probs=159.4
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhh---cCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh-hhchH
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFF---TGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK-WMGES 210 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~---~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~-~~g~~ 210 (436)
|+|++.+++.|...+.......... .....++.++||+||||||||++|+++|+.++.+|+.+++.++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 7999999999998885332211111 1122356899999999999999999999999999999999988743 66665
Q ss_pred -HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCCC----------CCCceEE
Q 042771 211 -EKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVGH----------NDQKVLV 273 (436)
Q Consensus 211 -~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~~----------~~~~v~v 273 (436)
...+..+|..+ ....++||||||+|.+...+.... .......+++.|+..|++... ...++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~ 176 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQ 176 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEE
Confidence 55667777665 334567999999999987654321 222334588999999984310 0112334
Q ss_pred EeccCC--------C----------Cc-----------------------------------ccHHHHhhccceEEcCCC
Q 042771 274 LAATNT--------P----------YA-----------------------------------LDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 274 i~ttn~--------~----------~~-----------------------------------l~~~l~~Rf~~~i~~~~p 300 (436)
|+|||. . .. +.++|++||+.++.|++|
T Consensus 177 i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl 256 (363)
T 3hws_A 177 VDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNEL 256 (363)
T ss_dssp CCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCC
T ss_pred EECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCC
Confidence 444443 1 11 789999999999999999
Q ss_pred CHHHHHHHHHH----Hh-------C--CCCCCCChhhHHHHHH--HcCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 301 DLKARQHMFKV----HL-------G--DTPHNLTESDFESLAR--KTEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 301 ~~~~r~~il~~----~l-------~--~~~~~~~~~~~~~la~--~t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
+.+++.+|+.. ++ . .....++++.++.|+. ....+.+++|+.+++.++..++.+..
T Consensus 257 ~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~ 327 (363)
T 3hws_A 257 SEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLP 327 (363)
T ss_dssp CHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhcc
Confidence 99999999876 21 1 2334568889999996 45667789999999999988877664
No 41
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.85 E-value=1.3e-20 Score=176.79 Aligned_cols=209 Identities=21% Similarity=0.275 Sum_probs=145.2
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh-hhhhchH
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV-SKWMGES 210 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~-~~~~g~~ 210 (436)
...++|.....+.+........ ..+......++.++||+||||||||++|+++|+.++.+++.+++.+.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~--~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLV--QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHH--HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHH--HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 3457777666554444211000 011111235568999999999999999999999999999999876532 2112233
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccH-HHHh
Q 042771 211 EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQ-AIRR 289 (436)
Q Consensus 211 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~-~l~~ 289 (436)
...+..+|..+....+++|||||+|.|++.+..+ ......++..|...+++......+++||+|||.++.+++ .+++
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~ 187 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLN 187 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhc
Confidence 4567788888887788999999999997655322 122345666777777765445567889999999988888 6788
Q ss_pred hccceEEcCCCCH-HHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCC----CHHHHHHHHHHHhh
Q 042771 290 RFDKRIYIPLPDL-KARQHMFKVHLGDTPHNLTESDFESLARKTEGF----SGSDISVCVKDVLF 349 (436)
Q Consensus 290 Rf~~~i~~~~p~~-~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~----s~~dl~~l~~~a~~ 349 (436)
||...+.+|.++. ++...++... ..+++.++..|+..+.|| +.+++..+++.|..
T Consensus 188 rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~ 247 (272)
T 1d2n_A 188 AFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ 247 (272)
T ss_dssp TSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT
T ss_pred ccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh
Confidence 9988888877665 5555555442 235788999999999997 56777777666653
No 42
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.84 E-value=1.3e-19 Score=180.95 Aligned_cols=203 Identities=18% Similarity=0.304 Sum_probs=142.8
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe
Q 042771 127 KPNVKWNDVA-G--LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS 198 (436)
Q Consensus 127 ~~~~~~~dl~-G--~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~ 198 (436)
.|..+|++++ | +..+...+......+ .. +.+++|+||||||||+|++++++.+ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4566899988 5 444555555544332 11 4689999999999999999999988 88899999
Q ss_pred ccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccC
Q 042771 199 SSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATN 278 (436)
Q Consensus 199 ~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 278 (436)
+..+...+...........|.......+.||||||+|.+.... .....|+..++... ..+..+||++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l~-~~~~~iIitt~~ 236 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------GVQTELFHTFNELH-DSGKQIVICSDR 236 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHHH-TTTCEEEEEESS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------HHHHHHHHHHHHHH-HCCCeEEEEECC
Confidence 9887654433322211122333333367899999999985321 11233444433221 223455665555
Q ss_pred CCCc---ccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 279 TPYA---LDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 279 ~~~~---l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
.+.. +++++++||. ..+.+++|+.+++..|++..+......++++.+..|+..+.| +.+++..+++.+...+.
T Consensus 237 ~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 237 EPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp CGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 5654 8899999996 789999999999999999988766667788999999999976 88899999888876653
No 43
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.82 E-value=8.3e-19 Score=168.62 Aligned_cols=199 Identities=21% Similarity=0.295 Sum_probs=141.9
Q ss_pred CCCCcccccc-C--cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 127 KPNVKWNDVA-G--LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 127 ~~~~~~~dl~-G--~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
.|..+|++++ | +..+...+..++..+ ...+.+++|+||||||||+|++++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 3567899997 4 556666666655442 1234689999999999999999999998 8999999998
Q ss_pred chhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 201 DLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
++...+.+.........|.... ..+.+|||||+|.+.... . ....++..++... ..+..+|+++++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~------~----~~~~l~~~l~~~~-~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE------R----TQIEFFHIFNTLY-LLEKQIILASDRHP 142 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH------H----HHHHHHHHHHHHH-HTTCEEEEEESSCG
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh------H----HHHHHHHHHHHHH-HCCCeEEEEecCCh
Confidence 8765544433222222222222 236799999999985321 1 1222333332211 12345677777777
Q ss_pred C---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 281 Y---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 281 ~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
. .+++++++||. ..+.+++ +.+++..|++..+......++++.+..|+..+ | +.+++..+++.+...
T Consensus 143 ~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 143 QKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLK 214 (324)
T ss_dssp GGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHc
Confidence 6 68999999996 6788999 99999999999988777788999999999999 4 778888888877654
No 44
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.82 E-value=3e-19 Score=163.54 Aligned_cols=193 Identities=22% Similarity=0.293 Sum_probs=145.7
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.+..|++++|.+..++.|...+... ..++.++|+||||+|||++++++++.++..
T Consensus 12 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 80 (250)
T 1njg_A 12 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 80 (250)
T ss_dssp CHHHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC
T ss_pred HHhhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 4556778889999999999999999887531 223579999999999999999999987432
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.++... ......+..++..+. ...+.+|+|||+|.+. ...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~------------~~~ 142 (250)
T 1njg_A 81 GVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 142 (250)
T ss_dssp SCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC------------HHH
T ss_pred cccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc------------HHH
Confidence 22222211 012233444444432 2357899999999872 234
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++.. ..++.+|++||.+..+++.+++|+ ..+.+++++.++..++++.++......+++..+..|++.+.
T Consensus 143 ~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 218 (250)
T 1njg_A 143 FNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 218 (250)
T ss_dssp HHHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 56667777642 456888899999999999999997 68999999999999999998876666778899999999997
Q ss_pred CCCHHHHHHHHHHHh
Q 042771 334 GFSGSDISVCVKDVL 348 (436)
Q Consensus 334 g~s~~dl~~l~~~a~ 348 (436)
| +++.+..+++.++
T Consensus 219 G-~~~~~~~~~~~~~ 232 (250)
T 1njg_A 219 G-SLRDALSLTDQAI 232 (250)
T ss_dssp T-CHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHH
Confidence 7 7889888888775
No 45
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.82 E-value=1.9e-18 Score=166.64 Aligned_cols=204 Identities=20% Similarity=0.238 Sum_probs=146.4
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
.+.....+.+|++++|++.+++.|...+..... ...++.+++|+||||||||||++++|+.+++++...++..
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 455666777999999999999988876643210 1133468999999999999999999999999887776554
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC---------------
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------------- 266 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------------- 266 (436)
+.. ...+..++.. ...+.|+||||++.+.. .+.+.|+..++....
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~------------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~ 146 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRLNK------------AVEELLYSAIEDFQIDIMIGKGPSAKSIRI 146 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCCCC-------------
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH------------HHHHHHHHHHHhcccceeeccCcccccccc
Confidence 321 1122222222 22457999999998842 123333333332210
Q ss_pred CCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 267 NDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 267 ~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
....+.++++++.+..+++.+++||...+.+++|+.+++.++++.........++++.+..|+..+.| +++.+..+++.
T Consensus 147 ~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~ 225 (334)
T 1in4_A 147 DIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKR 225 (334)
T ss_dssp --CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHH
T ss_pred cCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHH
Confidence 01236677889999999999999998889999999999999999887666667789999999999987 67888888887
Q ss_pred HhhhHHH
Q 042771 347 VLFEPVR 353 (436)
Q Consensus 347 a~~~a~~ 353 (436)
+...+..
T Consensus 226 ~~~~a~~ 232 (334)
T 1in4_A 226 VRDMLTV 232 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 46
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=4e-20 Score=186.24 Aligned_cols=201 Identities=17% Similarity=0.246 Sum_probs=147.8
Q ss_pred HHHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---
Q 042771 114 KLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA--- 190 (436)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l--- 190 (436)
.........+.....+-+|++|+|.+...+.+...+.. ....++||+||||||||++|+++|+.+
T Consensus 161 ~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~ 228 (468)
T 3pxg_A 161 PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228 (468)
T ss_dssp HHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSS
T ss_pred hHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 34445555666777888999999999999998887743 223689999999999999999999996
Q ss_pred -------CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 191 -------DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 191 -------~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
+.+++.+++. ..+.|..+..++.+|..+....+.||||| . . ....+.|+..++
T Consensus 229 ~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~--------~----~~a~~~L~~~L~- 288 (468)
T 3pxg_A 229 EVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID----A--------A----IDASNILKPSLA- 288 (468)
T ss_dssp CSCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC----C--------------------CCCTT-
T ss_pred CCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe----C--------c----hhHHHHHHHhhc-
Confidence 7788888887 56677777788899999988889999999 0 0 112333433333
Q ss_pred CCCCCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHcCC
Q 042771 264 VGHNDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKTEG 334 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t~g 334 (436)
.+.+.+|++||.+. .+++++++||. .+.|+.|+.+++..|++.++.. ....+++..+..++..+.+
T Consensus 289 ----~g~v~vI~at~~~e~~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~ 363 (468)
T 3pxg_A 289 ----RGELQCIGATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDR 363 (468)
T ss_dssp ----SSSCEEEEECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHH
T ss_pred ----CCCEEEEecCCHHHHHHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 34688999998876 68999999997 6999999999999999988876 5667889999999987665
Q ss_pred CC-----HHHHHHHHHHHhhhH
Q 042771 335 FS-----GSDISVCVKDVLFEP 351 (436)
Q Consensus 335 ~s-----~~dl~~l~~~a~~~a 351 (436)
|. +.....+++.|...+
T Consensus 364 ~~~~~~lp~~ai~ll~~a~~~~ 385 (468)
T 3pxg_A 364 YISDRFLPDKAIDLIDEAGSKV 385 (468)
T ss_dssp SSCCSCTTHHHHHHHHHHHHHH
T ss_pred HhccCcCCcHHHHHHHHHHHHH
Confidence 54 457777887777443
No 47
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.82 E-value=3.7e-19 Score=172.88 Aligned_cols=195 Identities=15% Similarity=0.161 Sum_probs=144.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC------Cce
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD------STF 194 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~------~~~ 194 (436)
..|..++.+.+|++++|++++++.|..++.. ....++||+||||||||++|+++++.++ ..+
T Consensus 25 ~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 92 (353)
T 1sxj_D 25 QPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRI 92 (353)
T ss_dssp -CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSE
T ss_pred ccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccce
Confidence 3567788999999999999999999887643 1123599999999999999999999864 457
Q ss_pred EEEeccchhhhhhchHHHHHHHHHHHHH----------------hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHH
Q 042771 195 FSISSSDLVSKWMGESEKLVSSLFQMAR----------------ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELL 258 (436)
Q Consensus 195 ~~v~~~~l~~~~~g~~~~~~~~~~~~a~----------------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll 258 (436)
+.+++++..+. ..+...+.... ...+.||||||+|.+.. ...+.|+
T Consensus 93 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~~~~~Ll 154 (353)
T 1sxj_D 93 LELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------DAQSALR 154 (353)
T ss_dssp EEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------HHHHHHH
T ss_pred EEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------HHHHHHH
Confidence 88887764221 11111111111 12456999999998832 2346677
Q ss_pred HHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHH
Q 042771 259 VQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGS 338 (436)
Q Consensus 259 ~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~ 338 (436)
..++.. ...+.+|+++|.+..+.+++++||. .+.+++|+.++...++...+......++++.+..|+..+.| +.+
T Consensus 155 ~~le~~---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r 229 (353)
T 1sxj_D 155 RTMETY---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLR 229 (353)
T ss_dssp HHHHHT---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHH
T ss_pred HHHHhc---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHH
Confidence 777643 3346677788999999999999996 89999999999999999988777777899999999999987 455
Q ss_pred HHHHHHHHHhhh
Q 042771 339 DISVCVKDVLFE 350 (436)
Q Consensus 339 dl~~l~~~a~~~ 350 (436)
.+..+++.+...
T Consensus 230 ~~~~~l~~~~~~ 241 (353)
T 1sxj_D 230 RGITLLQSASKG 241 (353)
T ss_dssp HHHHHHHHTHHH
T ss_pred HHHHHHHHHHHh
Confidence 555555555443
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.82 E-value=1.3e-19 Score=174.17 Aligned_cols=194 Identities=14% Similarity=0.131 Sum_probs=143.4
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..|..++.+.+|++++|++.+++.|..++.. ...++.+|++||||||||++++++|++++.+++.++++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 3577788999999999999999999988863 23335688889999999999999999999999999987
Q ss_pred chhhhhhchHHHHHHHHHHHHHhc-----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEe
Q 042771 201 DLVSKWMGESEKLVSSLFQMARES-----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLA 275 (436)
Q Consensus 201 ~l~~~~~g~~~~~~~~~~~~a~~~-----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ 275 (436)
+.. ...++..+...... .+.||||||+|.+.+ ....+.|+..++.. ..++.+|+
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~---~~~~~iI~ 141 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAY---SSNCSIII 141 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHH---GGGCEEEE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhC---CCCcEEEE
Confidence 643 22333333332222 568999999998831 23455666666643 34578889
Q ss_pred ccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHh-------CCCCCCCCh-hhHHHHHHHcCCCCHHHHHHHHHHH
Q 042771 276 ATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHL-------GDTPHNLTE-SDFESLARKTEGFSGSDISVCVKDV 347 (436)
Q Consensus 276 ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l-------~~~~~~~~~-~~~~~la~~t~g~s~~dl~~l~~~a 347 (436)
+||.+..+++++++||. .+.|+.|+.+++..|++.++ ......+++ +.+..|+..+.| +.+++...++.+
T Consensus 142 ~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g-d~R~a~~~L~~~ 219 (324)
T 3u61_B 142 TANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFP-DFRKTIGELDSY 219 (324)
T ss_dssp EESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCS-CTTHHHHHHHHH
T ss_pred EeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 99999999999999995 79999999998766654433 334556677 889999999877 333444444444
Q ss_pred h
Q 042771 348 L 348 (436)
Q Consensus 348 ~ 348 (436)
+
T Consensus 220 ~ 220 (324)
T 3u61_B 220 S 220 (324)
T ss_dssp G
T ss_pred h
Confidence 3
No 49
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.82 E-value=9.5e-19 Score=171.89 Aligned_cols=207 Identities=16% Similarity=0.153 Sum_probs=147.7
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEecc
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSS 200 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~ 200 (436)
...++++|.+...+.|..++...+. ...+.+++|+||||||||++++++++.+ +..++.+++.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3458899999999999987744321 1334689999999999999999999988 7889999987
Q ss_pred chhhhh----------------hch-HHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhh
Q 042771 201 DLVSKW----------------MGE-SEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQ 262 (436)
Q Consensus 201 ~l~~~~----------------~g~-~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~ 262 (436)
...+.. .+. ....+..++...... .|.||||||+|.+.... .....+..++..++
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQ 160 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGG
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchh
Confidence 543211 011 233345555555433 47899999999985321 02344455555544
Q ss_pred cCCCCCCceEEEeccCCC---CcccHHHHhhccc-eEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHcC---
Q 042771 263 GVGHNDQKVLVLAATNTP---YALDQAIRRRFDK-RIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKTE--- 333 (436)
Q Consensus 263 ~~~~~~~~v~vi~ttn~~---~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t~--- 333 (436)
.... ..++.+|++||.+ ..+++.+++||.. .+.|++|+.++...+++..+.. ....++++.+..++..+.
T Consensus 161 ~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 239 (387)
T 2v1u_A 161 ELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREH 239 (387)
T ss_dssp CC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSS
T ss_pred hcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 3210 4567888888887 7889999999975 8999999999999999988753 345567888999999887
Q ss_pred CCCHHHHHHHHHHHhhhHHH
Q 042771 334 GFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~~a~~ 353 (436)
| .++.+..+++.|+..+..
T Consensus 240 G-~~r~~~~~l~~a~~~a~~ 258 (387)
T 2v1u_A 240 G-DARRALDLLRVAGEIAER 258 (387)
T ss_dssp C-CHHHHHHHHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHH
Confidence 5 677788888888766543
No 50
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=1.2e-19 Score=185.15 Aligned_cols=210 Identities=19% Similarity=0.213 Sum_probs=143.1
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCC-ChhhhcC----CCCCCcceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVK-FPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~-~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
..|+.++.+.+|++|+|++.+++.|..++..... .+..|.. +..+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 4678889999999999999999999998865211 1111221 1124579999999999999999999999999999
Q ss_pred EEeccchhhhhhchHHH-------HHHHHHHHH-----HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 196 SISSSDLVSKWMGESEK-------LVSSLFQMA-----RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~-------~~~~~~~~a-----~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
.++++++.......... .+..+|..+ ....+.||||||+|.+..... ..+..|+..++.
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~---------~~l~~L~~~l~~ 177 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR---------GGVGQLAQFCRK 177 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST---------THHHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH---------HHHHHHHHHHHh
Confidence 99998875543211000 011222222 224678999999999865321 123455555553
Q ss_pred CCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 042771 264 VGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVC 343 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l 343 (436)
. ...+++++++.....+. .+++|+ ..+.|+.|+.+++..++...+......++++.+..|++.+.| |++.+
T Consensus 178 ~---~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~~ 248 (516)
T 1sxj_A 178 T---STPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQV 248 (516)
T ss_dssp C---SSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHHH
T ss_pred c---CCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHHH
Confidence 2 23344444443333444 355555 689999999999999998887666666788899999999876 56555
Q ss_pred HHHHh
Q 042771 344 VKDVL 348 (436)
Q Consensus 344 ~~~a~ 348 (436)
++...
T Consensus 249 i~~L~ 253 (516)
T 1sxj_A 249 INLLS 253 (516)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 55443
No 51
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.81 E-value=3e-19 Score=170.57 Aligned_cols=209 Identities=19% Similarity=0.288 Sum_probs=153.1
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh---
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW--- 206 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~--- 206 (436)
++++|++.+++.|...+..... .......|..++||+||||||||++|+++++.+ +.+++.+++..+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~---~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH---TCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhc---CCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 3588999999999888754310 011123444689999999999999999999997 5679999988764321
Q ss_pred --hchHH-----HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCCce
Q 042771 207 --MGESE-----KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQKV 271 (436)
Q Consensus 207 --~g~~~-----~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v 271 (436)
.|... .....+........++||||||+|.+. ..+.+.|+..++.... ...++
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~------------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 161 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAH------------PDVFNILLQMLDDGRLTDSHGRTVDFRNT 161 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSC------------HHHHHHHHHHHHHSEEECTTSCEEECTTE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcC------------HHHHHHHHHHHhcCEEEcCCCCEEECCCc
Confidence 11000 000223344445566899999999873 3456777777764321 12367
Q ss_pred EEEeccCC--------------------------CCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------C
Q 042771 272 LVLAATNT--------------------------PYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------T 316 (436)
Q Consensus 272 ~vi~ttn~--------------------------~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~ 316 (436)
++|+|||. ...++++|++||+..+.+++|+.+++..|++.++.. .
T Consensus 162 iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~ 241 (311)
T 4fcw_A 162 VIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241 (311)
T ss_dssp EEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTC
T ss_pred EEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 79999998 457889999999999999999999999999987753 2
Q ss_pred CCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhh
Q 042771 317 PHNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 317 ~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
...+++..+..|+...+ .++.++|+.+++.++..++.+..
T Consensus 242 ~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 242 SLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 45578999999999887 67899999999999988776654
No 52
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.81 E-value=1.5e-19 Score=177.55 Aligned_cols=223 Identities=20% Similarity=0.299 Sum_probs=148.7
Q ss_pred cccCcHHHHHHHHHHHhccCCChhh------------------hcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQF------------------FTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~------------------~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
.|+|++.+++.|..++..+..+... ......+..++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4899999999999887433222111 1122345578999999999999999999999999999
Q ss_pred EEeccchh-hhhhchH-HHHHHHHHHHH----HhcCCeEEEEccccccccCCCCCC--CchHHHHHHHHHHHHhhcCC--
Q 042771 196 SISSSDLV-SKWMGES-EKLVSSLFQMA----RESAPSIIFIDEIDSLCGQRGEGN--ESEASRRIKTELLVQMQGVG-- 265 (436)
Q Consensus 196 ~v~~~~l~-~~~~g~~-~~~~~~~~~~a----~~~~p~il~iDeid~l~~~~~~~~--~~~~~~~~~~~ll~~l~~~~-- 265 (436)
.+++..+. ..+.|.. ...+..++... ....++||||||+|.+...+.... .......+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3344432 34455555432 223568999999999976532210 01111236788888888531
Q ss_pred ----------------CCCCceEEEeccCC-----------------------------------------CCcccHHHH
Q 042771 266 ----------------HNDQKVLVLAATNT-----------------------------------------PYALDQAIR 288 (436)
Q Consensus 266 ----------------~~~~~v~vi~ttn~-----------------------------------------~~~l~~~l~ 288 (436)
....++++|+++|. ...+.++|+
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01134567776652 123678999
Q ss_pred hhccceEEcCCCCHHHHHHHHHH----H-------h--CCCCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHH
Q 042771 289 RRFDKRIYIPLPDLKARQHMFKV----H-------L--GDTPHNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 289 ~Rf~~~i~~~~p~~~~r~~il~~----~-------l--~~~~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~ 353 (436)
+||+.++.|++++.++...|+.. + + ......++++.+..|+.... ....+.|..++..++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999998862 1 1 12345578999999998865 35789999999999888776
Q ss_pred hhh
Q 042771 354 KTQ 356 (436)
Q Consensus 354 ~~~ 356 (436)
+..
T Consensus 342 ~~~ 344 (376)
T 1um8_A 342 DLP 344 (376)
T ss_dssp TGG
T ss_pred hcc
Confidence 654
No 53
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.81 E-value=1.2e-18 Score=159.72 Aligned_cols=191 Identities=14% Similarity=0.121 Sum_probs=134.7
Q ss_pred CCCccccccC---cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEeccc
Q 042771 128 PNVKWNDVAG---LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSD 201 (436)
Q Consensus 128 ~~~~~~dl~G---~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~ 201 (436)
|..+|++++| ...+.+.+..++.. ....+++|+||||||||++++++++.+. .+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 3478999997 34667777766543 1346899999999999999999999874 7888899887
Q ss_pred hhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCce-EEEeccCCC
Q 042771 202 LVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKV-LVLAATNTP 280 (436)
Q Consensus 202 l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v-~vi~ttn~~ 280 (436)
+...+... +.. ...+.+|||||+|.+... ... ...|+..++.... .+.+ +|++++..+
T Consensus 91 ~~~~~~~~--------~~~--~~~~~vliiDe~~~~~~~-------~~~---~~~l~~~l~~~~~-~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTAL--------LEG--LEQFDLICIDDVDAVAGH-------PLW---EEAIFDLYNRVAE-QKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGG--------GTT--GGGSSEEEEETGGGGTTC-------HHH---HHHHHHHHHHHHH-HCSCEEEEEESSCT
T ss_pred HHHHHHHH--------HHh--ccCCCEEEEeccccccCC-------HHH---HHHHHHHHHHHHH-cCCCeEEEEcCCCH
Confidence 65543211 111 134679999999988432 111 2223333332211 1223 444444444
Q ss_pred C---cccHHHHhhcc--ceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHH
Q 042771 281 Y---ALDQAIRRRFD--KRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 281 ~---~l~~~l~~Rf~--~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~ 352 (436)
. .+++.+.+||. ..+.++.|+.+++.+++..++......++++.+..|+..+.| +.+.+..+++.+...+.
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~ 225 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASM 225 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHH
Confidence 3 45689999996 799999999999999999998766677899999999999876 78888888888876653
No 54
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.80 E-value=5.5e-19 Score=169.08 Aligned_cols=196 Identities=20% Similarity=0.212 Sum_probs=144.9
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEE
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFS 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~ 196 (436)
.|..++.+.+|++++|++.+++.|...+.. + .. .++||+||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER----------K-NI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT----------T-CC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC----------C-CC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 466788999999999999999999876532 1 12 359999999999999999999986 345788
Q ss_pred EeccchhhhhhchHHHHHHHHHHHH-H-hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEE
Q 042771 197 ISSSDLVSKWMGESEKLVSSLFQMA-R-ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVL 274 (436)
Q Consensus 197 v~~~~l~~~~~g~~~~~~~~~~~~a-~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi 274 (436)
+++++..+. ......+....... . ...+.||+|||+|.+.. ...+.|+..++. ....+.+|
T Consensus 74 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 74 MNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp EETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS---SSSSEEEE
T ss_pred EeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh---cCCCCeEE
Confidence 887764321 11112222221110 0 14578999999998732 234556666653 34568888
Q ss_pred eccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 275 AATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 275 ~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
++||.+..+.+++++||. .+.|++|+.+++..++...+...+..++++.+..|+..+.| +.+.+..+++.+.
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999999999996 89999999999999999998887778899999999988866 5555555555544
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.80 E-value=4.9e-19 Score=189.01 Aligned_cols=205 Identities=17% Similarity=0.252 Sum_probs=154.7
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhch
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGE 209 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~ 209 (436)
++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAG---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTT---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 56999999999999888653210 11122344579999999999999999999997 6789999999988766544
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEEeccCCCC
Q 042771 210 SEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVLAATNTPY 281 (436)
Q Consensus 210 ~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi~ttn~~~ 281 (436)
...++...+...++||||||||.+ ...+++.|+..|+... ....+++||+|||.+.
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKA------------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGS------------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----cchhhHHHHhCCCeEEEEeCcccc------------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 233344555667789999999987 3456777888877521 1234689999999764
Q ss_pred c------------ccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------CCCCCChhhHHHHHH--HcCCCCHH
Q 042771 282 A------------LDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------TPHNLTESDFESLAR--KTEGFSGS 338 (436)
Q Consensus 282 ~------------l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~~~~~~~~~~~la~--~t~g~s~~ 338 (436)
. +.++|++||+.++.|++|+.+++..|++.++.. ....++++.++.|+. ..+.++.+
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R 711 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTT
T ss_pred hhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCCh
Confidence 3 789999999999999999999999999887642 344578999999987 45667889
Q ss_pred HHHHHHHHHhhhHHHhhh
Q 042771 339 DISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 339 dl~~l~~~a~~~a~~~~~ 356 (436)
+|+.+++.++..++.+..
T Consensus 712 ~L~~~i~~~v~~~l~~~~ 729 (758)
T 3pxi_A 712 PLRRAIQKHVEDRLSEEL 729 (758)
T ss_dssp THHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999887776654
No 56
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.80 E-value=4e-18 Score=163.64 Aligned_cols=198 Identities=19% Similarity=0.211 Sum_probs=146.7
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC-----CceE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD-----STFF 195 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~-----~~~~ 195 (436)
..|..++.+.+|++++|++.+++.|..++... . ..++||+||||||||++|+++++.+. ..++
T Consensus 13 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~ 80 (327)
T 1iqp_A 13 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG-----------S-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFL 80 (327)
T ss_dssp SCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT-----------C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CchhhccCCCCHHHhhCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceE
Confidence 45777889999999999999999999877531 1 23599999999999999999999863 3477
Q ss_pred EEeccchhhhhhchHHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEE
Q 042771 196 SISSSDLVSKWMGESEKLVSSLFQMA--RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLV 273 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 273 (436)
.+++++..+. ......+....... ....+.||+|||+|.+.. ...+.|+..++.. ...+.+
T Consensus 81 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~---~~~~~~ 143 (327)
T 1iqp_A 81 ELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRRTMEMF---SSNVRF 143 (327)
T ss_dssp EEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT---TTTEEE
T ss_pred EeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------HHHHHHHHHHHhc---CCCCeE
Confidence 7777654321 11111121111100 114578999999998732 2356677777642 445778
Q ss_pred EeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 042771 274 LAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 274 i~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
|+++|.+..+.+++.+||. .+.|++++.++...+++..+......++++.+..|+..+.| +.+.+..+++.+..
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 8899999999999999996 89999999999999999988777777889999999999876 66666666665553
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.80 E-value=3.5e-19 Score=190.41 Aligned_cols=254 Identities=19% Similarity=0.249 Sum_probs=178.8
Q ss_pred hhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc--------
Q 042771 119 LNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-------- 190 (436)
Q Consensus 119 ~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-------- 190 (436)
....+.....+-+|++++|.+...+.+...+.. ....++||+||||||||++|+++++.+
T Consensus 172 ~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~ 239 (758)
T 1r6b_X 172 FTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV 239 (758)
T ss_dssp SSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG
T ss_pred HhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh
Confidence 333444555667899999999999988887643 234689999999999999999999986
Q ss_pred --CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC
Q 042771 191 --DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH 266 (436)
Q Consensus 191 --~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 266 (436)
+..++.+++..+. ..+.|..+..++.++..+....++||||||+|.+.+...... ......+.|...+
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~---~~~~~~~~L~~~l----- 311 (758)
T 1r6b_X 240 MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG---GQVDAANLIKPLL----- 311 (758)
T ss_dssp GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS---CHHHHHHHHSSCS-----
T ss_pred hcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc---chHHHHHHHHHHH-----
Confidence 6678888877765 457788889999999999887889999999999987654311 1222223222222
Q ss_pred CCCceEEEeccCCC-----CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHcCC---
Q 042771 267 NDQKVLVLAATNTP-----YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKTEG--- 334 (436)
Q Consensus 267 ~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t~g--- 334 (436)
..+.+.+|++|+.+ ..+++++.+||. .+.++.|+.+++..||+.++.. ....+++..+..++..+.+
T Consensus 312 ~~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~ 390 (758)
T 1r6b_X 312 SSGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYIN 390 (758)
T ss_dssp SSCCCEEEEEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCT
T ss_pred hCCCeEEEEEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcc
Confidence 23567888888764 357899999997 7999999999999999887643 3455788888888877655
Q ss_pred --CCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhh
Q 042771 335 --FSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLAR 412 (436)
Q Consensus 335 --~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~ 412 (436)
+.+..+..++++|+........ ......|+.+|+..++..
T Consensus 391 ~~~lp~~~i~lld~a~~~~~~~~~--------------------------------------~~~~~~v~~~di~~~~~~ 432 (758)
T 1r6b_X 391 DRHLPDKAIDVIDEAGARARLMPV--------------------------------------SKRKKTVNVADIESVVAR 432 (758)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHSSS--------------------------------------CCCCCSCCHHHHHHHHHH
T ss_pred cccCchHHHHHHHHHHHHHhcccc--------------------------------------cccCCccCHHHHHHHHHH
Confidence 4556777788777643211100 000146888899888876
Q ss_pred CC----CCCCHHHHHHHHHHHHH
Q 042771 413 QR----PTVSKSDLEVQERFTKE 431 (436)
Q Consensus 413 ~~----ps~s~~~~~~y~~~~~~ 431 (436)
.. +.+++++...+....+.
T Consensus 433 ~~~ip~~~~~~~~~~~l~~l~~~ 455 (758)
T 1r6b_X 433 IARIPEKSVSQSDRDTLKNLGDR 455 (758)
T ss_dssp HSCCCCCCSSSSHHHHHHHHHHH
T ss_pred hcCCCccccchhHHHHHHHHHHH
Confidence 43 24666666666655544
No 58
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.80 E-value=3.7e-18 Score=164.57 Aligned_cols=159 Identities=22% Similarity=0.226 Sum_probs=110.2
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh--hhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV--SKW 206 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~--~~~ 206 (436)
+-.+++++|++++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.... ...
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l 88 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL 88 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence 34567899999999988877643 15899999999999999999999999999998874211 111
Q ss_pred hchHH-HHHHHHHHHHHhcC---CeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------CCCCceEEE
Q 042771 207 MGESE-KLVSSLFQMARESA---PSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------HNDQKVLVL 274 (436)
Q Consensus 207 ~g~~~-~~~~~~~~~a~~~~---p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~v~vi 274 (436)
.+... ......|. .... .+||||||+|.+. ....+.|+..++... ..+.+++||
T Consensus 89 ~g~~~~~~~~~~~~--~~~g~l~~~vl~iDEi~~~~------------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~vi 154 (331)
T 2r44_A 89 IGTMIYNQHKGNFE--VKKGPVFSNFILADEVNRSP------------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVL 154 (331)
T ss_dssp HEEEEEETTTTEEE--EEECTTCSSEEEEETGGGSC------------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEE
T ss_pred CCceeecCCCCceE--eccCcccccEEEEEccccCC------------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEE
Confidence 11000 00000000 0011 2699999999873 234555666665321 123457788
Q ss_pred eccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC
Q 042771 275 AATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD 315 (436)
Q Consensus 275 ~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~ 315 (436)
+|+|... .+++++++||...+.+++|+.+++.+|++..+..
T Consensus 155 at~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 155 ATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp EEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred EecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 8888543 3899999999888999999999999999998765
No 59
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.79 E-value=1e-18 Score=169.65 Aligned_cols=203 Identities=16% Similarity=0.185 Sum_probs=127.8
Q ss_pred cCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-------c-----
Q 042771 126 EKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-------T----- 193 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-------~----- 193 (436)
..++.+|++++|++.+++.+......+ ...++||+||||||||++|+++++.++. +
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 346789999999999888765544321 1246999999999999999999999863 1
Q ss_pred ---------------------eEEEeccchhhhhhchHHHHHHHHHHHH---------HhcCCeEEEEccccccccCCCC
Q 042771 194 ---------------------FFSISSSDLVSKWMGESEKLVSSLFQMA---------RESAPSIIFIDEIDSLCGQRGE 243 (436)
Q Consensus 194 ---------------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a---------~~~~p~il~iDeid~l~~~~~~ 243 (436)
++.+..........|.. .+...+... ....++||||||+|.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~----- 157 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLE----- 157 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC-----
T ss_pred cccccchhhhhccccccCCCcccccCCCcchhhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCC-----
Confidence 11111110000111110 001111111 11136799999999873
Q ss_pred CCCchHHHHHHHHHHHHhhcC----CC------CCCceEEEeccCCCC-cccHHHHhhccceEEcCCC-CHHHHHHHHHH
Q 042771 244 GNESEASRRIKTELLVQMQGV----GH------NDQKVLVLAATNTPY-ALDQAIRRRFDKRIYIPLP-DLKARQHMFKV 311 (436)
Q Consensus 244 ~~~~~~~~~~~~~ll~~l~~~----~~------~~~~v~vi~ttn~~~-~l~~~l~~Rf~~~i~~~~p-~~~~r~~il~~ 311 (436)
....+.|+..++.. .. ...++++|+|+|... .+++++++||+..+.++.| +.+.+..|++.
T Consensus 158 -------~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 158 -------DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp -------HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 22345566655531 00 012688999999744 8999999999888999998 67777788866
Q ss_pred HhC-----------------------------CCCCCCChhhHHHHHHHcCCC---CHHHHHHHHHHHhhhHHHh
Q 042771 312 HLG-----------------------------DTPHNLTESDFESLARKTEGF---SGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 312 ~l~-----------------------------~~~~~~~~~~~~~la~~t~g~---s~~dl~~l~~~a~~~a~~~ 354 (436)
.+. .....++++.+..|+..+.+. +.+.+..+++.|...+..+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~ 305 (350)
T 1g8p_A 231 RDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE 305 (350)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT
T ss_pred HHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc
Confidence 311 122356788888887766542 4577777777776665443
No 60
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=2.8e-18 Score=164.42 Aligned_cols=192 Identities=14% Similarity=0.138 Sum_probs=144.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEE
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFS 196 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~ 196 (436)
.+..++.+.+|++++|++.+++.|..++.. + .. .+++|+||||+|||++|+++++.+ +..++.
T Consensus 10 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------~-~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 77 (323)
T 1sxj_B 10 PWVEKYRPQVLSDIVGNKETIDRLQQIAKD----------G-NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLE 77 (323)
T ss_dssp CHHHHTCCSSGGGCCSCTHHHHHHHHHHHS----------C-CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred cHHHhcCCCCHHHHHCCHHHHHHHHHHHHc----------C-CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEE
Confidence 355678889999999999999999988743 1 22 249999999999999999999986 345777
Q ss_pred EeccchhhhhhchHHHHHHHHHHHHH-------hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 197 ISSSDLVSKWMGESEKLVSSLFQMAR-------ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 197 v~~~~l~~~~~g~~~~~~~~~~~~a~-------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
+++.+..+ ...++.++.... ...+.||+|||+|.+.. ...+.|+..++. ...
T Consensus 78 ~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~---~~~ 136 (323)
T 1sxj_B 78 LNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMEL---YSN 136 (323)
T ss_dssp ECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHH---TTT
T ss_pred ecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhc---cCC
Confidence 87765321 223444444433 23478999999998732 224556666664 245
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHh
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~ 348 (436)
.+.+|++||.+..+.+++++||. .+.|++|+.++...++...+......+++..+..|+..+.| +++.+..+++.+.
T Consensus 137 ~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 137 STRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred CceEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 67788888999999999999995 89999999999999999887666666789999999999976 4555555555544
No 61
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.78 E-value=5.5e-19 Score=155.78 Aligned_cols=166 Identities=19% Similarity=0.332 Sum_probs=120.5
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------C
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----------D 191 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----------~ 191 (436)
.+.....+..|++++|.++..+.+...+.. ..+.+++|+||||||||++++++++.+ +
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 78 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 78 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 344455677899999999999998887643 234689999999999999999999986 6
Q ss_pred CceEEEeccchh--hhhhchHHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCC
Q 042771 192 STFFSISSSDLV--SKWMGESEKLVSSLFQMAR-ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHND 268 (436)
Q Consensus 192 ~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 268 (436)
.+++.+++..+. ..+.+.....+..++..+. ...+.||+|||+|.+.......... .+.+.+...++ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~l~~~~~-----~ 149 (195)
T 1jbk_A 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAM----DAGNMLKPALA-----R 149 (195)
T ss_dssp CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CC----CCHHHHHHHHH-----T
T ss_pred CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchH----HHHHHHHHhhc-----c
Confidence 888999988765 3445566667777777664 3557899999999997543211111 11222333332 2
Q ss_pred CceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHH
Q 042771 269 QKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMF 309 (436)
Q Consensus 269 ~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il 309 (436)
.++.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 3567888888775 78999999997 7999999999998875
No 62
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.78 E-value=3.6e-18 Score=167.84 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=139.8
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-----------CCceEEEecc
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-----------DSTFFSISSS 200 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-----------~~~~~~v~~~ 200 (436)
.++++|.+...+.|..++..... ...+++++|+||||||||++|+++++.+ +.+++.++|.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 37899999999999887754321 1334689999999999999999999987 8999999987
Q ss_pred chh-hhh------h-----------ch-HHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHH-HHHHHHH
Q 042771 201 DLV-SKW------M-----------GE-SEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRI-KTELLVQ 260 (436)
Q Consensus 201 ~l~-~~~------~-----------g~-~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~-~~~ll~~ 260 (436)
... ... . +. ....+..++..+....+ ||||||+|.+..... ... +..|+
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~--------~~~~l~~l~-- 159 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRG--------GDIVLYQLL-- 159 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTT--------SHHHHHHHH--
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCC--------CceeHHHHh--
Confidence 643 110 0 10 12334455554444444 999999999854320 112 22232
Q ss_pred hhcCCCCCCceEEEeccCCC---CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHcCC-
Q 042771 261 MQGVGHNDQKVLVLAATNTP---YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKTEG- 334 (436)
Q Consensus 261 l~~~~~~~~~v~vi~ttn~~---~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t~g- 334 (436)
+ .. .++.+|++||.+ ..+++.+++||...+.|++|+.++...+++.++.. ....++++.+..++..+.+
T Consensus 160 -~-~~---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 160 -R-SD---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp -T-SS---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTT
T ss_pred -c-CC---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhc
Confidence 2 11 568888888877 68899999999789999999999999999998752 2345688889999998872
Q ss_pred -CCHHHHHHHHHHHhhhH
Q 042771 335 -FSGSDISVCVKDVLFEP 351 (436)
Q Consensus 335 -~s~~dl~~l~~~a~~~a 351 (436)
-..+.+..+++.|...+
T Consensus 235 ~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 235 HGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp CCCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 24556667777776554
No 63
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.78 E-value=5.4e-18 Score=165.92 Aligned_cols=194 Identities=22% Similarity=0.287 Sum_probs=146.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST-------- 193 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~-------- 193 (436)
.+..++.+.+|++++|++.+++.|...+... ..++.+||+||+|||||++++++++.+++.
T Consensus 5 ~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 73 (373)
T 1jr3_A 5 VLARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC 73 (373)
T ss_dssp CHHHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCC
T ss_pred HHHHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 3556788889999999999999999877431 223578999999999999999999988642
Q ss_pred ----------------eEEEeccchhhhhhchHHHHHHHHHHHHH----hcCCeEEEEccccccccCCCCCCCchHHHHH
Q 042771 194 ----------------FFSISSSDLVSKWMGESEKLVSSLFQMAR----ESAPSIIFIDEIDSLCGQRGEGNESEASRRI 253 (436)
Q Consensus 194 ----------------~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~p~il~iDeid~l~~~~~~~~~~~~~~~~ 253 (436)
++.++...- .....++.++..+. ...+.||+|||+|.+. ...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~------------~~~ 135 (373)
T 1jr3_A 74 GVCDNCREIEQGRFVDLIEIDAASR------TKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS------------RHS 135 (373)
T ss_dssp SSSHHHHHHHTSCCSSCEEEETTCS------CCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC------------HHH
T ss_pred cccHHHHHHhccCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCeEEEEEECcchhc------------HHH
Confidence 233332210 00112344554443 2346899999999873 233
Q ss_pred HHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC
Q 042771 254 KTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE 333 (436)
Q Consensus 254 ~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~ 333 (436)
.+.|+..++. ....+++|++|+.+..+.+.+++|+ ..+.+++|+.++...+++.++...+..++++.+..|+..+.
T Consensus 136 ~~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~ 211 (373)
T 1jr3_A 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAE 211 (373)
T ss_dssp HHHHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSS
T ss_pred HHHHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCC
Confidence 5667777774 3456888888888999999999999 68999999999999999998876666678889999999997
Q ss_pred CCCHHHHHHHHHHHhh
Q 042771 334 GFSGSDISVCVKDVLF 349 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~ 349 (436)
| +++++..+++.+..
T Consensus 212 G-~~r~~~~~l~~~~~ 226 (373)
T 1jr3_A 212 G-SLRDALSLTDQAIA 226 (373)
T ss_dssp S-CHHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHH
Confidence 6 77788888877653
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.77 E-value=4e-18 Score=182.17 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=155.5
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhh-------
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSK------- 205 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~------- 205 (436)
.+|+|++++++.|...+..... -+.....|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 4589999999998887754211 011123455689999999999999999999999999999999887543
Q ss_pred -----hhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCCceE
Q 042771 206 -----WMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQKVL 272 (436)
Q Consensus 206 -----~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~v~ 272 (436)
|+|..+ ...+...++...++||||||||.+ ...+++.|+..|+.... ...+++
T Consensus 535 g~~~g~~g~~~--~~~l~~~~~~~~~~vl~lDEi~~~------------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 535 GAPPGYVGFDQ--GGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp CCCSCSHHHHH--TTHHHHHHHHCSSEEEEEETGGGS------------CHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred CCCCCCcCccc--cchHHHHHHhCCCcEEEEeCcccc------------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 333221 123455556667799999999986 24567888888874311 124688
Q ss_pred EEeccCCCC-------------------------cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC---------CCC
Q 042771 273 VLAATNTPY-------------------------ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD---------TPH 318 (436)
Q Consensus 273 vi~ttn~~~-------------------------~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~---------~~~ 318 (436)
||+|||.+. .++++|++||+.++.|++|+.+++..|++.++.. ...
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 999999754 6789999999999999999999999999988752 134
Q ss_pred CCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhh
Q 042771 319 NLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 319 ~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
.+++..++.|+.... .+..+.|..+++.++..++.+..
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 578999999998653 45589999999999887666543
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.77 E-value=7.5e-18 Score=179.85 Aligned_cols=200 Identities=18% Similarity=0.249 Sum_probs=147.9
Q ss_pred HHhhhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----
Q 042771 115 LRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---- 190 (436)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---- 190 (436)
........+.....+-+|++|+|.+..++.+...+.. ....++||+||||||||++|+++|+.+
T Consensus 162 ~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~ 229 (758)
T 3pxi_A 162 TLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNE 229 (758)
T ss_dssp HHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 3445555666677788999999999999999887743 233689999999999999999999997
Q ss_pred ------CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 191 ------DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 191 ------~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
+.+++.+++ ...|.|+.+..++.+|..+....|+||||| . .....+.|+..++
T Consensus 230 ~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--~--------------~~~~~~~L~~~l~-- 288 (758)
T 3pxi_A 230 VPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--A--------------AIDASNILKPSLA-- 288 (758)
T ss_dssp SCTTTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--C----------------------CCCTT--
T ss_pred CChhhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--C--------------chhHHHHHHHHHh--
Confidence 788888887 556778888889999999998899999999 0 0112333433333
Q ss_pred CCCCCceEEEeccCCCC-----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhCC----CCCCCChhhHHHHHHHcC--
Q 042771 265 GHNDQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGD----TPHNLTESDFESLARKTE-- 333 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~----~~~~~~~~~~~~la~~t~-- 333 (436)
.+.+.+|++||... .+++++++|| ..+.|+.|+.+++..||+.+... ....+++..+..++..+.
T Consensus 289 ---~~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~ 364 (758)
T 3pxi_A 289 ---RGELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRY 364 (758)
T ss_dssp ---SSSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHS
T ss_pred ---cCCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcc
Confidence 45688899998887 7999999999 57999999999999999987765 456678888888887654
Q ss_pred ---CCCHHHHHHHHHHHhhhH
Q 042771 334 ---GFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 334 ---g~s~~dl~~l~~~a~~~a 351 (436)
++.++....++..|+..+
T Consensus 365 i~~~~~p~~ai~ll~~a~~~~ 385 (758)
T 3pxi_A 365 ISDRFLPDKAIDLIDEAGSKV 385 (758)
T ss_dssp SCCSCTTHHHHHHHHHHHHHH
T ss_pred cccCcCCcHHHHHHHHHHHHH
Confidence 556677778888876544
No 66
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=9.8e-18 Score=163.04 Aligned_cols=197 Identities=16% Similarity=0.205 Sum_probs=139.2
Q ss_pred cccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC---------
Q 042771 122 AIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS--------- 192 (436)
Q Consensus 122 ~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~--------- 192 (436)
.|+.++.+.+|++++|++.+++.|..++.. ....++ ++|+||+|+||||+++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 477889999999999999999998876511 112223 999999999999999999996421
Q ss_pred --------------------ceEEEeccchhhhhhchHHHHHHHHHHHHH--------------hcCCeEEEEccccccc
Q 042771 193 --------------------TFFSISSSDLVSKWMGESEKLVSSLFQMAR--------------ESAPSIIFIDEIDSLC 238 (436)
Q Consensus 193 --------------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~--------------~~~p~il~iDeid~l~ 238 (436)
.++.+++.+... .....++.++..+. ...|.||+|||++.|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 122233222110 00112333333331 2357799999999862
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCC
Q 042771 239 GQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPH 318 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~ 318 (436)
....+.|+..++.. ..++.+|.+|+.+..+.+++++|| ..+.|++|+.++...+++..+.....
T Consensus 148 ------------~~~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 148 ------------KDAQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp ------------HHHHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred ------------HHHHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 23355667777653 335778888999999999999999 78999999999999999998876666
Q ss_pred CCC-hhhHHHHHHHcCCCCHHHHHHHHHHHhhh
Q 042771 319 NLT-ESDFESLARKTEGFSGSDISVCVKDVLFE 350 (436)
Q Consensus 319 ~~~-~~~~~~la~~t~g~s~~dl~~l~~~a~~~ 350 (436)
.++ ++.+..|+..+.| +.+++..+++.+...
T Consensus 212 ~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 212 QLETKDILKRIAQASNG-NLRVSLLMLESMALN 243 (354)
T ss_dssp EECCSHHHHHHHHHHTT-CHHHHHHHHTHHHHT
T ss_pred CCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 678 8899999999976 566666666665543
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.76 E-value=5.2e-17 Score=159.73 Aligned_cols=207 Identities=14% Similarity=0.087 Sum_probs=144.7
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhh
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSK 205 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~ 205 (436)
...++++|.+...+.|..++..... +.....++++|+||||||||++++++++.+ +..++.++|......
T Consensus 14 ~~p~~l~gr~~~~~~l~~~l~~~~~------~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 14 YVPKRLPHREQQLQQLDILLGNWLR------NPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCCSCCTTCHHHHHHHHHHHHHHHH------STTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc------CCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 3448899999999999887754211 111112389999999999999999999998 567888987654321
Q ss_pred --h--------------hc-hHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC-
Q 042771 206 --W--------------MG-ESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH- 266 (436)
Q Consensus 206 --~--------------~g-~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~- 266 (436)
. .+ ........+...... ..|.||+|||+|.+ ....+..|+..++....
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l------------~~~~~~~L~~~~~~~~~~ 155 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL------------APDILSTFIRLGQEADKL 155 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS------------CHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc------------chHHHHHHHHHHHhCCCC
Confidence 0 01 122223333333332 45789999999987 12345566666653311
Q ss_pred CCCceEEEeccCCC---CcccHHHHhhccc-eEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHcC-------
Q 042771 267 NDQKVLVLAATNTP---YALDQAIRRRFDK-RIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKTE------- 333 (436)
Q Consensus 267 ~~~~v~vi~ttn~~---~~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t~------- 333 (436)
...++.+|+++|.+ ..+++.+.+||.. .+.|++++.++...++...+.. ....+++..+..++..+.
T Consensus 156 ~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (389)
T 1fnn_A 156 GAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDT 235 (389)
T ss_dssp SSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCT
T ss_pred CcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCC
Confidence 01467888888887 6788999999875 8999999999999999887753 233578999999999994
Q ss_pred -CCCHHHHHHHHHHHhhhHHHh
Q 042771 334 -GFSGSDISVCVKDVLFEPVRK 354 (436)
Q Consensus 334 -g~s~~dl~~l~~~a~~~a~~~ 354 (436)
+..++.+..+++.|+..+..+
T Consensus 236 ~~G~~r~~~~~l~~a~~~a~~~ 257 (389)
T 1fnn_A 236 NRGDARLAIDILYRSAYAAQQN 257 (389)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHHHHHh
Confidence 236778888888888766543
No 68
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=3.7e-18 Score=184.28 Aligned_cols=213 Identities=18% Similarity=0.259 Sum_probs=146.5
Q ss_pred hhhccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-------
Q 042771 118 GLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA------- 190 (436)
Q Consensus 118 ~~~~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l------- 190 (436)
.+...+.....+-+|++++|.++..+.+...+.. ....+++|+||||||||++|+++|+.+
T Consensus 155 ~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~ 222 (854)
T 1qvr_A 155 QYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE 222 (854)
T ss_dssp HHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred HHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCch
Confidence 3444555566778999999999998888887643 233679999999999999999999987
Q ss_pred ---CCceEEEeccchh--hhhhchHHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 191 ---DSTFFSISSSDLV--SKWMGESEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 191 ---~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
+.+++.+++..+. ..+.|+.+..+..++..+... .|+||||||+|.+.+..... ....+.+.|...++
T Consensus 223 ~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~----g~~~~~~~L~~~l~-- 296 (854)
T 1qvr_A 223 GLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAE----GAVDAGNMLKPALA-- 296 (854)
T ss_dssp TSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH--
T ss_pred hhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCcc----chHHHHHHHHHHHh--
Confidence 8899999998886 467788888899999998875 68899999999997654321 11223344444443
Q ss_pred CCCCCceEEEeccCCCC----cccHHHHhhccceEEcCCCCHHHHHHHHHHHhC----CCCCCCChhhHHHHHHHc----
Q 042771 265 GHNDQKVLVLAATNTPY----ALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG----DTPHNLTESDFESLARKT---- 332 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~~----~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~----~~~~~~~~~~~~~la~~t---- 332 (436)
.+.+.+|++||.+. .+++++++||+ .+.++.|+.+++..||+.++. .....+++..+..++..+
T Consensus 297 ---~~~i~~I~at~~~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 297 ---RGELRLIGATTLDEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp ---TTCCCEEEEECHHHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred ---CCCeEEEEecCchHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 24567888888664 57899999997 499999999999999987664 234557888888888765
Q ss_pred -CCCCHHHHHHHHHHHhhhHH
Q 042771 333 -EGFSGSDISVCVKDVLFEPV 352 (436)
Q Consensus 333 -~g~s~~dl~~l~~~a~~~a~ 352 (436)
+.|.+.....++.+|+....
T Consensus 373 ~~~~lp~kai~lldea~a~~~ 393 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARLR 393 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHHH
Confidence 44667777888887775443
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=2.6e-17 Score=161.50 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=146.2
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc------CCceEEEeccch
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA------DSTFFSISSSDL 202 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l------~~~~~~v~~~~l 202 (436)
....++++|.+...+.|..++...+. ...+.+++|+||+|||||+|++++++.+ +..++.+++...
T Consensus 16 ~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~ 87 (386)
T 2qby_A 16 DYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQI 87 (386)
T ss_dssp SCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCC
Confidence 34558899999999999887643211 1334689999999999999999999988 888999987643
Q ss_pred hhhh----------------hc-hHHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC
Q 042771 203 VSKW----------------MG-ESEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 203 ~~~~----------------~g-~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~ 264 (436)
.... .+ ........++...... .|.||+|||++.+..... ...+..|+..++..
T Consensus 88 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~ 159 (386)
T 2qby_A 88 DTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV 159 (386)
T ss_dssp CSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc
Confidence 2110 01 1233345555555444 388999999999864321 12355666666543
Q ss_pred CCCCCceEEEeccCCC---CcccHHHHhhcc-ceEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHHHHcC---CC
Q 042771 265 GHNDQKVLVLAATNTP---YALDQAIRRRFD-KRIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLARKTE---GF 335 (436)
Q Consensus 265 ~~~~~~v~vi~ttn~~---~~l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la~~t~---g~ 335 (436)
...++.+|++++.+ ..+++.+.+||. ..+.+++++.++..+++...+.. ....+++..+..++..+. |
T Consensus 160 --~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G- 236 (386)
T 2qby_A 160 --NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG- 236 (386)
T ss_dssp --CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-
T ss_pred --CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-
Confidence 34467888888877 467889999986 48999999999999999987642 234567888999998887 5
Q ss_pred CHHHHHHHHHHHhhhHHH
Q 042771 336 SGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 336 s~~dl~~l~~~a~~~a~~ 353 (436)
+++.+..+++.++..+..
T Consensus 237 ~~r~~~~ll~~a~~~a~~ 254 (386)
T 2qby_A 237 DARRALDLLRVSGEIAER 254 (386)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 566777788888766543
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.7e-17 Score=160.48 Aligned_cols=180 Identities=18% Similarity=0.198 Sum_probs=135.9
Q ss_pred ccccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCC-----ceE
Q 042771 121 SAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADS-----TFF 195 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~-----~~~ 195 (436)
..|..++.+.+|++++|++.+++.|...+.. + .. .+++|+||||||||++++++|+.+.. .+.
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~----------g-~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVDE----------G-KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHT----------T-CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHhc----------C-CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 3577788999999999999999999887753 1 12 24999999999999999999998743 366
Q ss_pred EEeccchhhhhhchHHHHHHHHHHHHH------hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 196 SISSSDLVSKWMGESEKLVSSLFQMAR------ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 196 ~v~~~~l~~~~~g~~~~~~~~~~~~a~------~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
.+++++..+ ...++....... ...+.|++|||+|.+.. ...+.|+..++.. ..
T Consensus 81 ~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~---~~ 139 (340)
T 1sxj_C 81 ELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALRRVIERY---TK 139 (340)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHHHHHHHT---TT
T ss_pred EEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhcC---CC
Confidence 677654321 122233222222 12367999999998832 2356677777743 34
Q ss_pred ceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCC
Q 042771 270 KVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEG 334 (436)
Q Consensus 270 ~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g 334 (436)
.+.+|++||.+..+.+++++||. .+.|+.++.++...++...+......+++..+..++..+.|
T Consensus 140 ~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G 203 (340)
T 1sxj_C 140 NTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG 203 (340)
T ss_dssp TEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT
T ss_pred CeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 56777888999999999999995 88899999999999999888766677889999999999877
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.74 E-value=1.2e-17 Score=146.58 Aligned_cols=158 Identities=21% Similarity=0.355 Sum_probs=113.8
Q ss_pred ccccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------CC
Q 042771 123 IIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----------DS 192 (436)
Q Consensus 123 ~~~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----------~~ 192 (436)
+.....+.+|++++|.+...+.+...+.. ....+++|+||||||||++|+++++.+ +.
T Consensus 12 l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~ 79 (187)
T 2p65_A 12 LTALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGR 79 (187)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTC
T ss_pred HHHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCC
Confidence 33445566899999999998888877633 223689999999999999999999987 77
Q ss_pred ceEEEeccchhh--hhhchHHHHHHHHHHHHHhc-CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCC
Q 042771 193 TFFSISSSDLVS--KWMGESEKLVSSLFQMARES-APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQ 269 (436)
Q Consensus 193 ~~~~v~~~~l~~--~~~g~~~~~~~~~~~~a~~~-~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 269 (436)
+++.+++..+.. .+.+.....+..++..+... .|.+|||||+|.+.+.+..... ...+.+.|...++ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~---~~~~~~~l~~~~~-----~~ 151 (187)
T 2p65_A 80 KLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG---ALDAGNILKPMLA-----RG 151 (187)
T ss_dssp EEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT---SCCTHHHHHHHHH-----TT
T ss_pred eEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc---chHHHHHHHHHHh-----cC
Confidence 888888877652 24455566677777776655 6789999999999754431101 1122333333343 24
Q ss_pred ceEEEeccCCCC-----cccHHHHhhccceEEcCCCC
Q 042771 270 KVLVLAATNTPY-----ALDQAIRRRFDKRIYIPLPD 301 (436)
Q Consensus 270 ~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~~p~ 301 (436)
.+.+|+++|.+. .+++++++||. .+.++.|+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 152 ELRCIGATTVSEYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp CSCEEEEECHHHHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred CeeEEEecCHHHHHHHHhccHHHHHhcC-cccCCCCC
Confidence 577888888764 68999999997 58898885
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.72 E-value=3e-17 Score=177.17 Aligned_cols=211 Identities=19% Similarity=0.287 Sum_probs=156.0
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh--
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW-- 206 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~-- 206 (436)
+++|+|++.+++.|...+..... -......|..++||+||||||||++|+++++.+ +.+++.++|+++....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 46799999999999888754211 001123444689999999999999999999998 7899999998775431
Q ss_pred ---hchHHHH-----HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCCc
Q 042771 207 ---MGESEKL-----VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQK 270 (436)
Q Consensus 207 ---~g~~~~~-----~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~~ 270 (436)
.|..... ...+....+...++|||||||+.+ ...+++.|+..++.... ...+
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l------------~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~ 701 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKA------------HPDVFNILLQILDDGRLTDSHGRTVDFRN 701 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGS------------CHHHHHHHHHHHTTTEECCSSSCCEECTT
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccccc------------CHHHHHHHHHHhccCceECCCCCEeccCC
Confidence 1111111 133445555566789999999987 34567888888874311 1246
Q ss_pred eEEEeccCCC--------------------------CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC---------C
Q 042771 271 VLVLAATNTP--------------------------YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG---------D 315 (436)
Q Consensus 271 v~vi~ttn~~--------------------------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~---------~ 315 (436)
++||+|||.. ..+.++|++||+.++.|.+|+.++...|++.++. .
T Consensus 702 ~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~ 781 (854)
T 1qvr_A 702 TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKR 781 (854)
T ss_dssp EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 7899999972 2467889999998999999999999999988775 2
Q ss_pred CCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHhhhHHHhhhh
Q 042771 316 TPHNLTESDFESLARKTE--GFSGSDISVCVKDVLFEPVRKTQD 357 (436)
Q Consensus 316 ~~~~~~~~~~~~la~~t~--g~s~~dl~~l~~~a~~~a~~~~~~ 357 (436)
....+++..+..|+...+ .++.++|+.+++.++..++.+..-
T Consensus 782 ~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i~ 825 (854)
T 1qvr_A 782 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKIL 825 (854)
T ss_dssp CEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHHH
T ss_pred ceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 234578999999999877 788999999999999888776543
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.72 E-value=5.9e-17 Score=163.01 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=98.4
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC--CceEEEecc-----chhhhh
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD--STFFSISSS-----DLVSKW 206 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~--~~~~~v~~~-----~l~~~~ 206 (436)
.|+|++++++.+...+.. ..++||+||||||||+||+++|+.++ .+|..+++. ++.+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~ 88 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 88 (500)
T ss_dssp TCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCB
T ss_pred hhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcc
Confidence 389999999988776643 15899999999999999999999884 355555543 222211
Q ss_pred hchHHHHHHHHHHHHHhc---CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcC-------CCCCCceEEEec
Q 042771 207 MGESEKLVSSLFQMARES---APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGV-------GHNDQKVLVLAA 276 (436)
Q Consensus 207 ~g~~~~~~~~~~~~a~~~---~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~-------~~~~~~v~vi~t 276 (436)
.+..... ...|..+..+ .++|||||||+.+ ...+.+.|+..|+.. ....+..++|++
T Consensus 89 ~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~------------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~A 155 (500)
T 3nbx_X 89 SIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKA------------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAA 155 (500)
T ss_dssp C-----------CBCCTTSGGGCSEEEEESGGGC------------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEE
T ss_pred cHHHHhh-chhHHhhhccCCCcceeeeHHhHhhh------------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhc
Confidence 1111000 1122212121 4579999999875 234567777777632 111222356777
Q ss_pred cCCCC---cccHHHHhhccceEEcCCCCH-HHHHHHHHHHh
Q 042771 277 TNTPY---ALDQAIRRRFDKRIYIPLPDL-KARQHMFKVHL 313 (436)
Q Consensus 277 tn~~~---~l~~~l~~Rf~~~i~~~~p~~-~~r~~il~~~l 313 (436)
||.+. ...+++++||...+.+++|+. +++..|+....
T Consensus 156 TN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 156 SNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp ESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhccc
Confidence 77542 245799999988899999987 77888887654
No 74
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.71 E-value=9e-17 Score=152.18 Aligned_cols=199 Identities=11% Similarity=0.088 Sum_probs=136.4
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----------CCceEEEeccchhh
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----------DSTFFSISSSDLVS 204 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----------~~~~~~v~~~~l~~ 204 (436)
|.|.++-.+.|...+...+. ...+.+++|+||||||||++++++++++ +..+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 66667777777666543321 2345799999999999999999999998 35688899876543
Q ss_pred h----------h------hchHHHHHHHHHHHH--HhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC
Q 042771 205 K----------W------MGESEKLVSSLFQMA--RESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH 266 (436)
Q Consensus 205 ~----------~------~g~~~~~~~~~~~~a--~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 266 (436)
. . .+.....+..+|... ....+.||+|||+|.|. . ..++..|+.... .
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~----------q~~L~~l~~~~~---~ 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S----------EKILQYFEKWIS---S 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C----------THHHHHHHHHHH---C
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c----------chHHHHHHhccc---c
Confidence 2 1 123455677777764 34567899999999986 1 123444444332 2
Q ss_pred CCCceEEEeccCCCCc----ccHHHHhhcc-ceEEcCCCCHHHHHHHHHHHhCCCC------------------------
Q 042771 267 NDQKVLVLAATNTPYA----LDQAIRRRFD-KRIYIPLPDLKARQHMFKVHLGDTP------------------------ 317 (436)
Q Consensus 267 ~~~~v~vi~ttn~~~~----l~~~l~~Rf~-~~i~~~~p~~~~r~~il~~~l~~~~------------------------ 317 (436)
...++.||+++|..+. +++++++||. ..|.|++++.++...|++..+....
T Consensus 160 ~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 160 KNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp SSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred cCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 4557899999988753 4556678996 5899999999999999998875421
Q ss_pred -----------CCCChhhHHHHHHH---cCCCCHHHHHHHHHHHhhhHHHhhh
Q 042771 318 -----------HNLTESDFESLARK---TEGFSGSDISVCVKDVLFEPVRKTQ 356 (436)
Q Consensus 318 -----------~~~~~~~~~~la~~---t~g~s~~dl~~l~~~a~~~a~~~~~ 356 (436)
..+++..+..+|+. ..| ..+---.+|+.|+..+-++..
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~G-D~R~Al~ilr~A~~~ae~e~~ 291 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSG-STEKAFKICEAAVEISKKDFV 291 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCC-hHHHHHHHHHHHHHHHHHHHH
Confidence 13578889999985 333 233334666777766655543
No 75
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.69 E-value=3.2e-16 Score=146.11 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=123.8
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEeccchhhhh
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDLVSKW 206 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l~~~~ 206 (436)
.+|++++|.+...+.+.+.+..... ...++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAP----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTT----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhC----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 4789999999888888776654221 236899999999999999999999875 689999998764321
Q ss_pred h-----chHHHHH-------HHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC--------C
Q 042771 207 M-----GESEKLV-------SSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG--------H 266 (436)
Q Consensus 207 ~-----g~~~~~~-------~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~ 266 (436)
. |...... ...+.. ..+++|||||+|.+. ...+..|+..++... .
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~---a~~~~l~lDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAP------------MMVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHH---TTTSEEEEESGGGSC------------HHHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhh---cCCcEEEEechHhcC------------HHHHHHHHHHHHhCCeecCCCccc
Confidence 1 1100000 011222 235699999999883 233555666665321 0
Q ss_pred CCCceEEEeccCCC-------CcccHHHHhhccc-eEEcCCCCH--HHHHHHHHHHhC------CCC--CCCChhhHHHH
Q 042771 267 NDQKVLVLAATNTP-------YALDQAIRRRFDK-RIYIPLPDL--KARQHMFKVHLG------DTP--HNLTESDFESL 328 (436)
Q Consensus 267 ~~~~v~vi~ttn~~-------~~l~~~l~~Rf~~-~i~~~~p~~--~~r~~il~~~l~------~~~--~~~~~~~~~~l 328 (436)
...++.+|+|||.+ ..+.+++.+||.. .+.+|+... ++...++++++. ... ..++++.+..|
T Consensus 138 ~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L 217 (265)
T 2bjv_A 138 LQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETL 217 (265)
T ss_dssp EECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHH
T ss_pred ccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHH
Confidence 12357888999875 2467999999963 445544432 444445544432 111 25789999999
Q ss_pred HHHcCCCCHHHHHHHHHHHhhhH
Q 042771 329 ARKTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 329 a~~t~g~s~~dl~~l~~~a~~~a 351 (436)
....+..+.++|..+++.++..+
T Consensus 218 ~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 218 LNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHHHHhC
Confidence 88877678889999998887543
No 76
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=1.7e-17 Score=171.33 Aligned_cols=252 Identities=17% Similarity=0.191 Sum_probs=147.9
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhc-CCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEE----eccchhhhhh
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFT-GKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI----SSSDLVSKWM 207 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~-~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v----~~~~l~~~~~ 207 (436)
..|+|++.+|+.+...+..... .... ...+...++||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~--~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVP--KVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCC--EETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCCc--ccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 3588999999888554422110 0000 1112234899999999999999999999987665543 2222221111
Q ss_pred -----chHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC----------CCCceE
Q 042771 208 -----GESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH----------NDQKVL 272 (436)
Q Consensus 208 -----g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~----------~~~~v~ 272 (436)
+.... ....+..+ .++||||||||.+.. ...+.|+..|+.... .+.++.
T Consensus 373 ~~~~~g~~~~-~~G~l~~A---~~gil~IDEid~l~~------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYL-EAGALVLA---DGGIAVIDEIDKMRD------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSE-EECHHHHH---SSSEECCTTTTCCCS------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccc-cCCeeEec---CCCcEEeehhhhCCH------------hHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 10000 00112222 346999999998732 235667777763221 134678
Q ss_pred EEeccCCCC-------------cccHHHHhhccc-eEEcCCCCHHHHHHHHHHHhCCCC-----CCCChhhHHHHHHHcC
Q 042771 273 VLAATNTPY-------------ALDQAIRRRFDK-RIYIPLPDLKARQHMFKVHLGDTP-----HNLTESDFESLARKTE 333 (436)
Q Consensus 273 vi~ttn~~~-------------~l~~~l~~Rf~~-~i~~~~p~~~~r~~il~~~l~~~~-----~~~~~~~~~~la~~t~ 333 (436)
||+|||.++ .+++++++||+. .+..+.|+.+ ...|+++.+.... ..++...+..+...+.
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar 515 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYAR 515 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHH
Confidence 999999886 899999999974 5556677777 8888888876433 2233444444332211
Q ss_pred -----CCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHH
Q 042771 334 -----GFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDK 408 (436)
Q Consensus 334 -----g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~ 408 (436)
.++......+.+.. ...+... ........+.++|....+-+.+++.|.-... ..|+.+|+.+
T Consensus 516 ~~~~p~ls~ea~~~l~~~y-----~~lR~~~---~~~~~~~~~~s~R~l~~lirla~a~A~l~~~-----~~V~~~dv~~ 582 (595)
T 3f9v_A 516 KYVTPKITSEAKNLITDFF-----VEMRKKS---SETPDSPILITPRQLEALIRISEAYAKMALK-----AEVTREDAER 582 (595)
T ss_dssp HHHCCCCCCCTHHHHHHHH-----TTSSCSC---CBCSSSCBCSSTTTTTHHHHHHHHHHHTTSS-----CCSSHHHHHH
T ss_pred HhCCCCCCHHHHHHHHHHH-----HHHHHhh---ccCCCccccccHHHHHHHHHHHHHHHHHhCc-----CCCCHHHHHH
Confidence 22221112221111 1111100 0011124678889899999988888876554 4799999999
Q ss_pred HHhhCCCC
Q 042771 409 VLARQRPT 416 (436)
Q Consensus 409 al~~~~ps 416 (436)
|+..++.|
T Consensus 583 Ai~l~~~s 590 (595)
T 3f9v_A 583 AINIMRLF 590 (595)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99866543
No 77
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.66 E-value=4e-16 Score=116.46 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=69.3
Q ss_pred CCh--hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 1 MYS--NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 1 m~~--~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
||+ +++++|++++++||+.|+.|+|++|+.+|++|+++|+++++.++|+..++.+++|+.+|++|||+|+..+
T Consensus 9 ~~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~l 83 (83)
T 2w2u_A 9 MSAQVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKELI 83 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 663 5899999999999999999999999999999999999999999999999999999999999999999864
No 78
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.64 E-value=4.9e-16 Score=116.44 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=70.2
Q ss_pred CC-hh-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 1 MY-SN-FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 1 m~-~~-~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
|+ .+ ++++|++++++||+.|+.|+|++|+.+|++||++|+++++.++|+..|+.+++|+.+|++|||+||..+
T Consensus 1 M~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 1 MSAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77 45 799999999999999999999999999999999999999999999999999999999999999999987
No 79
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.63 E-value=1.3e-15 Score=144.60 Aligned_cols=193 Identities=19% Similarity=0.252 Sum_probs=128.9
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhh--
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWM-- 207 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~-- 207 (436)
++++|.....+.+...+.... ....++||+||||||||++|+++++.. +.+|+.++|..+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 358898888888877765421 233689999999999999999999975 57899999987643211
Q ss_pred ---chH-------HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCC--------CCC
Q 042771 208 ---GES-------EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGH--------NDQ 269 (436)
Q Consensus 208 ---g~~-------~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--------~~~ 269 (436)
|.. .......|..+ .+++||||||+.+. ...+..|+..++.... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a---~~g~L~LDEi~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEA---DGGTLFLDEIGDIS------------PLMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHH---TTSEEEEESCTTCC------------HHHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhhhhcCHHHhc---CCCEEEEeccccCC------------HHHHHHHHHHHhcCEeeecCCcccccC
Confidence 100 00011223333 34699999999883 2345566666664320 123
Q ss_pred ceEEEeccCCC-------CcccHHHHhhccceEEcCCCCH----HHHHHHHHHHhC-------CCCCCCChhhHHHHHHH
Q 042771 270 KVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDL----KARQHMFKVHLG-------DTPHNLTESDFESLARK 331 (436)
Q Consensus 270 ~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~----~~r~~il~~~l~-------~~~~~~~~~~~~~la~~ 331 (436)
++.||++||.+ ..+++.+.+||. .+.+..|+. ++...++++++. .....++++.+..|...
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 57889999876 246788889985 444444443 344445555442 22346789999999999
Q ss_pred cCCCCHHHHHHHHHHHhhhH
Q 042771 332 TEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 332 t~g~s~~dl~~l~~~a~~~a 351 (436)
.+..+.++|..+++.++..+
T Consensus 216 ~wpGnvReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 216 DWPGNIRELENAIERAVVLL 235 (304)
T ss_dssp CCSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHhC
Confidence 87778899999999888654
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.61 E-value=1.6e-14 Score=139.22 Aligned_cols=173 Identities=14% Similarity=0.196 Sum_probs=123.8
Q ss_pred CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc-----------------------
Q 042771 137 GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST----------------------- 193 (436)
Q Consensus 137 G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~----------------------- 193 (436)
-++++.+.|...+.. .+.++.+||+||||+|||++|+++|+.+.+.
T Consensus 6 w~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 346667777766542 2344679999999999999999999987543
Q ss_pred -eEEEeccchhhhhhchHHHHHHHHHHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCC
Q 042771 194 -FFSISSSDLVSKWMGESEKLVSSLFQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHND 268 (436)
Q Consensus 194 -~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 268 (436)
++.+++.+- +. ...-..++.+.+.+.. ..+.|++|||+|.|. ....+.|++.++. +.
T Consensus 75 d~~~~~~~~~-~~--~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEe---p~ 136 (334)
T 1a5t_A 75 DYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEE---PP 136 (334)
T ss_dssp TEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTS---CC
T ss_pred CEEEEecccc-CC--CCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcC---CC
Confidence 333333210 00 0122345666665542 346799999999983 2346778888874 45
Q ss_pred CceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 042771 269 QKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVK 345 (436)
Q Consensus 269 ~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~ 345 (436)
.++++|++|+.+..+.+++++||. .+.|++|+.++...++.... .++++.+..++..+.| +++.+..+++
T Consensus 137 ~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 137 AETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred CCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 678888889999999999999995 89999999999999998875 4578888999999877 4445444443
No 81
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.57 E-value=2e-14 Score=149.26 Aligned_cols=235 Identities=22% Similarity=0.269 Sum_probs=147.8
Q ss_pred ccCCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCce---EEEeccc
Q 042771 125 REKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTF---FSISSSD 201 (436)
Q Consensus 125 ~~~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~---~~v~~~~ 201 (436)
..+++..|++++|++.+++.+...+.. ..+++|+||||||||+||++++..+.... +.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 467888999999999999998887643 25899999999999999999999875321 2221111
Q ss_pred hh--hh---h--hchHHH-------------------------------------------------HHHHHHH------
Q 042771 202 LV--SK---W--MGESEK-------------------------------------------------LVSSLFQ------ 219 (436)
Q Consensus 202 l~--~~---~--~g~~~~-------------------------------------------------~~~~~~~------ 219 (436)
.. .. + .+.... ....+|.
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 00 00 0 000000 0111111
Q ss_pred -----------------HHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----------------
Q 042771 220 -----------------MARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG----------------- 265 (436)
Q Consensus 220 -----------------~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~----------------- 265 (436)
......+++|||||++.|. ..+++.|+..|+...
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~------------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~ 246 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS------------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRT 246 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC------------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBC
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC------------HHHHHHHHHHHHcCcEEecccccccccccCCC
Confidence 0112245699999999872 234556666665211
Q ss_pred -CCCCceEEEeccCCC--CcccHHHHhhcc---ceEEcCC--C-CHHHHHHHHHHHhC-----CCCCCCChhhHHHHHHH
Q 042771 266 -HNDQKVLVLAATNTP--YALDQAIRRRFD---KRIYIPL--P-DLKARQHMFKVHLG-----DTPHNLTESDFESLARK 331 (436)
Q Consensus 266 -~~~~~v~vi~ttn~~--~~l~~~l~~Rf~---~~i~~~~--p-~~~~r~~il~~~l~-----~~~~~~~~~~~~~la~~ 331 (436)
..+.++.||++||.. ..++++|++||. ..+.|+. + +.+....+++.+.. .....++++.+..|.+.
T Consensus 247 ~~~p~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 247 EPVPCDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp SCEECCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred CccceeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 012357799999976 689999999996 3455543 2 34555555544332 13345788888888875
Q ss_pred c---CCC------CHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcC
Q 042771 332 T---EGF------SGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPIS 402 (436)
Q Consensus 332 t---~g~------s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt 402 (436)
. .|- +.+++..+++.|...|..+.. ..|+
T Consensus 327 ~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~------------------------------------------~~I~ 364 (604)
T 3k1j_A 327 AQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGK------------------------------------------KYVE 364 (604)
T ss_dssp HHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTC------------------------------------------SSBC
T ss_pred HhhhhccccccccCHHHHHHHHHHHHHHHHhcCc------------------------------------------cccc
Confidence 4 442 689999999988765543322 4799
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHH
Q 042771 403 KTDFDKVLARQRPTVSKSDLEVQERF 428 (436)
Q Consensus 403 ~~d~~~al~~~~ps~s~~~~~~y~~~ 428 (436)
.+|+.+|+... ..+..+.++.|..-
T Consensus 365 ~edv~~A~~~~-~~i~~~~~e~~l~~ 389 (604)
T 3k1j_A 365 REDVIEAVKMA-KPLEKQLADWYIER 389 (604)
T ss_dssp HHHHHHHHHHT-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh-hhhHHHHHHHHhcc
Confidence 99999999653 34556666666544
No 82
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.57 E-value=1.7e-14 Score=108.49 Aligned_cols=72 Identities=26% Similarity=0.415 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 042771 5 FKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDG 76 (436)
Q Consensus 5 ~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~~ 76 (436)
.-.+|++++++||++|+.|+|++|+.+|++|+++|+.+++.++|+..|+.+++++.+|++|||.||..+++.
T Consensus 12 ~~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~~ 83 (86)
T 4a5x_A 12 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQE 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 446899999999999999999999999999999999999999999999999999999999999999998653
No 83
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.6e-14 Score=109.26 Aligned_cols=75 Identities=45% Similarity=0.759 Sum_probs=71.6
Q ss_pred CC-hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 1 MY-SNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 1 m~-~~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
|+ .+++++|+.++++|++.|+.|+|++|+.+|.+|+++|+.+++.++++..|+.+++++.+|++|||.|+..+.+
T Consensus 4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66 5689999999999999999999999999999999999999999999999999999999999999999998854
No 84
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.56 E-value=6e-14 Score=111.83 Aligned_cols=77 Identities=42% Similarity=0.654 Sum_probs=71.3
Q ss_pred CC-h-hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 042771 1 MY-S-NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYE-KNPKIKEAITQKFTEYLRRAEEIRAVLDDGG 77 (436)
Q Consensus 1 m~-~-~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~-~d~~~~~~~~~k~~~y~~rae~lk~~l~~~~ 77 (436)
|+ . +++++|++++++||++|+.|+|++|+.+|++|+++|+.+++.+ .++..++.+++++.+|++|||+|+..+.+..
T Consensus 8 m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 8 MSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 55 3 5899999999999999999999999999999999999999998 6888899999999999999999999996543
No 85
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.55 E-value=2.5e-14 Score=109.61 Aligned_cols=73 Identities=26% Similarity=0.400 Sum_probs=70.2
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDG 76 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~~ 76 (436)
.++++|++++++||++|+.|+|++|+.+|++|+++|+.+++.++++..|+.+++|+.+|++|||+|+..+...
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999999999999999999999999999999999999999999998643
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.55 E-value=1.1e-13 Score=136.85 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=136.6
Q ss_pred CccccccCcHHHHHHHHHHH-hccCCChhhhcCCCCCCcceEE--ecCCcchHHHHHHHHHHHc---------CCceEEE
Q 042771 130 VKWNDVAGLESAKQALQEAV-ILPVKFPQFFTGKRQPWRAFLL--YGPPGTGKSYLAKAVATEA---------DSTFFSI 197 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~-~~~~~~~~~~~~~~~~~~~iLl--~GppGtGKT~la~aia~~l---------~~~~~~v 197 (436)
...++++|.+...+.|...+ ..... +....+..++| +||||+|||+|++.+++.+ +..++.+
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34478999999888888776 43211 00023367999 9999999999999999876 4567788
Q ss_pred eccchhh------hh---h-------ch-HHHHHHHHHHHHH-hcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHH
Q 042771 198 SSSDLVS------KW---M-------GE-SEKLVSSLFQMAR-ESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLV 259 (436)
Q Consensus 198 ~~~~l~~------~~---~-------g~-~~~~~~~~~~~a~-~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~ 259 (436)
++..... .. . +. .......+..... ...|.||+|||+|.+...... ....+..++.
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~ 166 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI------AAEDLYTLLR 166 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS------CHHHHHHHHT
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc------chHHHHHHHH
Confidence 8643211 00 0 11 1222333333332 345789999999998532110 1233444444
Q ss_pred HhhcCCCCC--CceEEEeccCCCC---ccc---HHHHhhccceEEcCCCCHHHHHHHHHHHhCC--CCCCCChhhHHHHH
Q 042771 260 QMQGVGHND--QKVLVLAATNTPY---ALD---QAIRRRFDKRIYIPLPDLKARQHMFKVHLGD--TPHNLTESDFESLA 329 (436)
Q Consensus 260 ~l~~~~~~~--~~v~vi~ttn~~~---~l~---~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~--~~~~~~~~~~~~la 329 (436)
.+....... .++.+|++++.+. .++ +.+.++|...+.+++++.++..+++...+.. ....+++..+..++
T Consensus 167 ~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~ 246 (412)
T 1w5s_A 167 VHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 246 (412)
T ss_dssp HHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHH
T ss_pred HHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHH
Confidence 554332113 5688888887654 344 6677788767999999999999999876532 12346788899999
Q ss_pred HHcC------CCCHHHHHHHHHHHhhhHHH
Q 042771 330 RKTE------GFSGSDISVCVKDVLFEPVR 353 (436)
Q Consensus 330 ~~t~------g~s~~dl~~l~~~a~~~a~~ 353 (436)
..+. | .++.+..+++.+...+..
T Consensus 247 ~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 247 DVYGEDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp HHHCGGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 9998 6 577888888887765544
No 87
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.53 E-value=1.8e-14 Score=121.53 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=88.7
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchH
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGES 210 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~ 210 (436)
+++|.....+.+.+.+.... ....++||+||||||||++|+++++.. +.+|+ ++|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57888888888877664321 223579999999999999999999987 67899 999877543
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-------Ccc
Q 042771 211 EKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-------YAL 283 (436)
Q Consensus 211 ~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-------~~l 283 (436)
......+..+ .+++|||||+|.+. ......|+..+... ..++.+|++||.+ ..+
T Consensus 66 -~~~~~~~~~a---~~g~l~ldei~~l~------------~~~q~~Ll~~l~~~---~~~~~~I~~t~~~~~~~~~~~~~ 126 (145)
T 3n70_A 66 -PQLNDFIALA---QGGTLVLSHPEHLT------------REQQYHLVQLQSQE---HRPFRLIGIGDTSLVELAASNHI 126 (145)
T ss_dssp -SCHHHHHHHH---TTSCEEEECGGGSC------------HHHHHHHHHHHHSS---SCSSCEEEEESSCHHHHHHHSCC
T ss_pred -hhhhcHHHHc---CCcEEEEcChHHCC------------HHHHHHHHHHHhhc---CCCEEEEEECCcCHHHHHHcCCC
Confidence 1223344444 34699999999983 23345566666432 3456788888865 246
Q ss_pred cHHHHhhcc-ceEEcCC
Q 042771 284 DQAIRRRFD-KRIYIPL 299 (436)
Q Consensus 284 ~~~l~~Rf~-~~i~~~~ 299 (436)
.+.+..|+. ..|.+|+
T Consensus 127 ~~~L~~rl~~~~i~lPp 143 (145)
T 3n70_A 127 IAELYYCFAMTQIACLP 143 (145)
T ss_dssp CHHHHHHHHHHEEECCC
T ss_pred CHHHHHHhcCCEEeCCC
Confidence 677777764 2355543
No 88
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.52 E-value=5.3e-15 Score=124.43 Aligned_cols=131 Identities=17% Similarity=0.237 Sum_probs=87.9
Q ss_pred cccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHH
Q 042771 134 DVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKL 213 (436)
Q Consensus 134 dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~ 213 (436)
+++|.+...+.+.+.+.... ....++||+||||||||++|+++++..+ +++.++|..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 47888888888887765321 2235799999999999999999999888 99999998865432
Q ss_pred HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC-Cc----ccHHHH
Q 042771 214 VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP-YA----LDQAIR 288 (436)
Q Consensus 214 ~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~-~~----l~~~l~ 288 (436)
...++..+ .+++|||||+|.+.. .....|+..++.. ...++.+|++||.+ .. +++.+.
T Consensus 67 ~~~~~~~a---~~~~l~lDei~~l~~------------~~q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L~ 129 (143)
T 3co5_A 67 PMELLQKA---EGGVLYVGDIAQYSR------------NIQTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKLA 129 (143)
T ss_dssp HHHHHHHT---TTSEEEEEECTTCCH------------HHHHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHHH
T ss_pred hhhHHHhC---CCCeEEEeChHHCCH------------HHHHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHHH
Confidence 34445544 346999999998832 2344455555532 13457788888754 33 556677
Q ss_pred hhcc-ceEEcCC
Q 042771 289 RRFD-KRIYIPL 299 (436)
Q Consensus 289 ~Rf~-~~i~~~~ 299 (436)
.||. ..+.+|+
T Consensus 130 ~rl~~~~i~lPp 141 (143)
T 3co5_A 130 GLFSESVVRIPP 141 (143)
T ss_dssp HHSSSEEEEECC
T ss_pred HHhcCcEEeCCC
Confidence 7864 3455554
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.48 E-value=1.8e-13 Score=129.60 Aligned_cols=142 Identities=10% Similarity=0.113 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc------CCceEEEeccchhhhhhchH
Q 042771 137 GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA------DSTFFSISSSDLVSKWMGES 210 (436)
Q Consensus 137 G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l------~~~~~~v~~~~l~~~~~g~~ 210 (436)
|++++.+.|...+... . .+++|||||||+|||++|+++|+.+ ...++.+++..- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 6777888888776431 2 4689999999999999999999874 346777776421 012
Q ss_pred HHHHHHHHHHHHhc----CCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 211 EKLVSSLFQMARES----APSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 211 ~~~~~~~~~~a~~~----~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
-..++.+.+.+... ...|+||||+|.|. ....+.|++.|+. +++.+++|++|+.+..+.++
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~t 128 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEE---PPEYAVIVLNTRRWHYLLPT 128 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhC---CCCCeEEEEEECChHhChHH
Confidence 23456666666432 34699999999983 2346788898884 45677888888899999999
Q ss_pred HHhhccceEEcCCCCHHHHHHHHHHHh
Q 042771 287 IRRRFDKRIYIPLPDLKARQHMFKVHL 313 (436)
Q Consensus 287 l~~Rf~~~i~~~~p~~~~r~~il~~~l 313 (436)
+++| .+.|++|+.++...++...+
T Consensus 129 I~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 129 IKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999 89999999999999998877
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.38 E-value=5.3e-13 Score=100.88 Aligned_cols=82 Identities=18% Similarity=0.269 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhh
Q 042771 301 DLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAV 380 (436)
Q Consensus 301 ~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (436)
|.++|.+||+.++...+.. ++.++..|+..|.||||+||..+|++|++.++++..
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~------------------------ 56 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVRENR------------------------ 56 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSCC------------------------
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 6789999999999887754 678899999999999999999999999999987653
Q ss_pred HhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCHHHHHHHH
Q 042771 381 QISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSKSDLEVQE 426 (436)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~~~~~~y~ 426 (436)
.+|+.+||..|+.+++||++ ++++.|+
T Consensus 57 ------------------~~i~~~df~~Al~~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 57 ------------------YIVLAKDFEKAYKTVIKKDE-QEHEFYK 83 (83)
T ss_dssp ------------------SSBCHHHHHHHHHHHCC-----------
T ss_pred ------------------CCcCHHHHHHHHHHHccCch-HHHHhcC
Confidence 57999999999999999999 8888885
No 91
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.36 E-value=1e-12 Score=100.16 Aligned_cols=86 Identities=16% Similarity=0.283 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhh
Q 042771 301 DLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAV 380 (436)
Q Consensus 301 ~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (436)
|.++|.+||+.++...+.. ++.++..||..|+||||+||..+|++|++.++++..
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~------------------------ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR------------------------ 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC------------------------
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc------------------------
Confidence 5678999999999887764 678999999999999999999999999999998754
Q ss_pred HhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCCCCH-HHHHHHHHHH
Q 042771 381 QISMQELAAKGLAEQILPPPISKTDFDKVLARQRPTVSK-SDLEVQERFT 429 (436)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps~s~-~~~~~y~~~~ 429 (436)
..|+.+||..|++++.|+++. .....|..|.
T Consensus 57 ------------------~~i~~~df~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 57 ------------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp ------------------SSBCHHHHHHHHHHHTC---------------
T ss_pred ------------------ccCCHHHHHHHHHHHhcCcccccchhHHhccC
Confidence 579999999999999999865 5688998884
No 92
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.34 E-value=1.6e-12 Score=145.75 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=105.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCC----------hhhhcC-----------------CCCCCc--ceEEecCCcc
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKF----------PQFFTG-----------------KRQPWR--AFLLYGPPGT 177 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~----------~~~~~~-----------------~~~~~~--~iLl~GppGt 177 (436)
.+.++|+++.|++++|+.+.+.+..++.+ ++.|.. ...+++ .+||||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 34589999999999999999999888733 334432 122334 4999999999
Q ss_pred hHHHHHHHHHHHc---CCceEEEeccchh------------hhhhch----HHHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 178 GKSYLAKAVATEA---DSTFFSISSSDLV------------SKWMGE----SEKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 178 GKT~la~aia~~l---~~~~~~v~~~~l~------------~~~~g~----~~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
|||+||++++.+. +.+.+.++..+.. ++|.++ ++..++.+|..|+...|++||+|+++.|+
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~ 1173 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALT 1173 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcC
Confidence 9999999999876 5566666655533 556667 88999999999999999999999999999
Q ss_pred cCC---CCCC--CchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 239 GQR---GEGN--ESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 239 ~~~---~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
+.+ +... +.....+++++++..|++... ..+|+|| +||..
T Consensus 1174 ~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~-~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1174 PKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK-QSNTLLI-FINQI 1218 (1706)
T ss_dssp CHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH-HTTCEEE-EEECE
T ss_pred cccccccccccccccHHHHHHHHHHHHHHhhhc-cCCeEEE-Eeccc
Confidence 883 1111 235677889999999987533 2346665 55544
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.30 E-value=1.1e-11 Score=108.14 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=77.6
Q ss_pred cCCCCccccccC----cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEE
Q 042771 126 EKPNVKWNDVAG----LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSI 197 (436)
Q Consensus 126 ~~~~~~~~dl~G----~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v 197 (436)
++.+.+|+++++ +..+.+.+..++.... ..++.+++|+||+|||||||++++++.+ |..++.+
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 456789999986 3445555555443321 1234689999999999999999999886 6677778
Q ss_pred eccchhhhhhchHHHH-HHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEec
Q 042771 198 SSSDLVSKWMGESEKL-VSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAA 276 (436)
Q Consensus 198 ~~~~l~~~~~g~~~~~-~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t 276 (436)
+..++...+....... ...++... ..|.+|+|||++... ........+..++..... .+..+|+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~llilDE~~~~~-------~~~~~~~~l~~ll~~~~~-----~~~~ii~t 139 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKTV--LNSPVLVLDDLGSER-------LSDWQRELISYIITYRYN-----NLKSTIIT 139 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHHH--HTCSEEEEETCSSSC-------CCHHHHHHHHHHHHHHHH-----TTCEEEEE
T ss_pred EHHHHHHHHHHHhcCchHHHHHHHh--cCCCEEEEeCCCCCc-------CCHHHHHHHHHHHHHHHH-----cCCCEEEE
Confidence 8776654332111000 00112222 256799999998531 222333344444433321 12456667
Q ss_pred cCCCC
Q 042771 277 TNTPY 281 (436)
Q Consensus 277 tn~~~ 281 (436)
||.+.
T Consensus 140 sn~~~ 144 (180)
T 3ec2_A 140 TNYSL 144 (180)
T ss_dssp CCCCS
T ss_pred cCCCh
Confidence 77653
No 94
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.29 E-value=5.4e-11 Score=116.53 Aligned_cols=241 Identities=16% Similarity=0.052 Sum_probs=132.3
Q ss_pred ccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHH-HHHcCCceEEEe-cc---chhhhhhch
Q 042771 135 VAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAV-ATEADSTFFSIS-SS---DLVSKWMGE 209 (436)
Q Consensus 135 l~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ai-a~~l~~~~~~v~-~~---~l~~~~~g~ 209 (436)
|+|++.+|+.|.-.+...-.. .+...++||.|+||| ||+||+++ ++.+....+... ++ .+.....+.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 999999999888766432111 112237999999999 99999999 776654333211 10 111000000
Q ss_pred HH-HHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC------CCCCceEEEeccCCCC-
Q 042771 210 SE-KLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG------HNDQKVLVLAATNTPY- 281 (436)
Q Consensus 210 ~~-~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~------~~~~~v~vi~ttn~~~- 281 (436)
+. ..-...+..| ..+|+|||||+.+. ...+..|+..|+.-. .-+.++.||+|+|+..
T Consensus 287 tG~~~~~G~l~LA---dgGvl~lDEIn~~~------------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~ 351 (506)
T 3f8t_A 287 RGWALRAGAAVLA---DGGILAVDHLEGAP------------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQ 351 (506)
T ss_dssp SSEEEEECHHHHT---TTSEEEEECCTTCC------------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC-
T ss_pred CCcccCCCeeEEc---CCCeeehHhhhhCC------------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccc
Confidence 00 0000111222 23599999999873 344566666665221 2234688999999875
Q ss_pred ----------cccHHHHhhccceE-EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcC-----C-CCHHHHHHHH
Q 042771 282 ----------ALDQAIRRRFDKRI-YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTE-----G-FSGSDISVCV 344 (436)
Q Consensus 282 ----------~l~~~l~~Rf~~~i-~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~-----g-~s~~dl~~l~ 344 (436)
.|++++++||+..+ .++.|+.+...+ .....++.+.+..+...+. - .+......++
T Consensus 352 yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e-------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~ 424 (506)
T 3f8t_A 352 WPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEE-------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLE 424 (506)
T ss_dssp -CCSCGGGGCCSCHHHHTTCSEEEETTC---------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHH
T ss_pred cCCCCCccccCCChHHhhheeeEEEecCCCChhHhhc-------ccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHH
Confidence 88999999998654 456677655422 1112345555554333222 1 2332222232
Q ss_pred HHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 345 KDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 345 ~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
+-.... |+... ..........+.++|...++-+.+++.|.-.+.+ .|+.+|+.+|++-+.-
T Consensus 425 ~~y~~t--R~~~~---~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~-----~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 425 HWYETR--REEVE---ERLGMGLPTLPVTRRQLESVERLAKAHARMRLSD-----DVEPEDVDIAAELVDW 485 (506)
T ss_dssp HHHHHH--HHHHH---HHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCS-----EECHHHHHHHHHHHHH
T ss_pred HHHHHH--hcCcc---cccccccccccccHHHHHHHHHHHHHHHHHcCcC-----CCCHHHHHHHHHHHHH
Confidence 222211 11110 0001122456788899999999999999876654 7999999999887653
No 95
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.24 E-value=8.7e-12 Score=94.33 Aligned_cols=78 Identities=17% Similarity=0.288 Sum_probs=69.8
Q ss_pred EcCCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCC
Q 042771 296 YIPLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPK 375 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 375 (436)
.-.+||.++|.+||+.++...+.. ++.++..||+.|.||||+||..+|++|++.++++..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~~------------------- 66 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR------------------- 66 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcC-------------------
Confidence 346899999999999999887654 678899999999999999999999999999998753
Q ss_pred CchhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCCC
Q 042771 376 QSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRPT 416 (436)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~ps 416 (436)
..|+.+||..|+.+++|.
T Consensus 67 -----------------------~~I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 67 -----------------------VHVTQEDFEMAVAKVMQK 84 (86)
T ss_dssp -----------------------SEECHHHHHHHHHHHHCC
T ss_pred -----------------------CCCCHHHHHHHHHHHccC
Confidence 579999999999999874
No 96
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.20 E-value=2.4e-11 Score=90.45 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=67.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCc
Q 042771 298 PLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQS 377 (436)
Q Consensus 298 ~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (436)
|+|+.++|.+||+.++...+.. ++.++..|+..|.||||+||..+|++|++.++++..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~~--------------------- 58 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRERR--------------------- 58 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCC---------------------
Confidence 6899999999999999887653 678999999999999999999999999999998753
Q ss_pred hhhHhhHHHHhhhccccccCCCCcCHHHHHHHHhhCCC
Q 042771 378 GAVQISMQELAAKGLAEQILPPPISKTDFDKVLARQRP 415 (436)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~~p 415 (436)
..|+.+||..|+.++..
T Consensus 59 ---------------------~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 59 ---------------------VHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp ---------------------SEECHHHHHHHHHHHHC
T ss_pred ---------------------CCCCHHHHHHHHHHHHh
Confidence 57999999999988754
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.19 E-value=1.3e-09 Score=104.80 Aligned_cols=194 Identities=15% Similarity=0.191 Sum_probs=120.3
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh---
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV--- 203 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~--- 203 (436)
.|...-+.++|.+...+.|...+.. ...++|+||+|+|||+|++.+++..+ ++++++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 3455667799999999999887642 15799999999999999999999886 6666654321
Q ss_pred ---------hhh---h-------------------------chHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC
Q 042771 204 ---------SKW---M-------------------------GESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246 (436)
Q Consensus 204 ---------~~~---~-------------------------g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 246 (436)
..+ . ......+..+...+....|.+|+|||++.+.....
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~---- 145 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS---- 145 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT----
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc----
Confidence 000 0 01122222232333323488999999999853100
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCccc---------HHHHhhccceEEcCCCCHHHHHHHHHHHhCCCC
Q 042771 247 SEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALD---------QAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTP 317 (436)
Q Consensus 247 ~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~---------~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~ 317 (436)
.....+...|...++.. .++.+|+|+.....+. ..+..|+...+.+++.+.++..+++...+....
T Consensus 146 -~~~~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 146 -RGGKELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp -TTTHHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred -cchhhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 01122233333333321 2455555554321111 112335556889999999999999988776555
Q ss_pred CCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 318 HNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 318 ~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
..+++..+..+...+.|+ +.-+..++..
T Consensus 221 ~~~~~~~~~~i~~~tgG~-P~~l~~~~~~ 248 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGI-PGWLVVFGVE 248 (350)
T ss_dssp CCCCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 556788899999999885 4556665543
No 98
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=99.19 E-value=1.9e-12 Score=116.27 Aligned_cols=74 Identities=26% Similarity=0.395 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGG 77 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~l~~~~ 77 (436)
.....|+.++++||++|+.|+|++|+.+|++|+++|+.+++.++|+..|+.+++++.+|++|||+||+.++...
T Consensus 18 p~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k 91 (257)
T 2ymb_A 18 PQSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEK 91 (257)
T ss_dssp --------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47889999999999999999999999999999999999999999999999999999999999999999997653
No 99
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.16 E-value=5.9e-10 Score=109.20 Aligned_cols=194 Identities=18% Similarity=0.206 Sum_probs=124.2
Q ss_pred cccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEeccchhhhhh-
Q 042771 132 WNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDLVSKWM- 207 (436)
Q Consensus 132 ~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l~~~~~- 207 (436)
+..++|.....+.+.+.+... .....+++|+|++||||+++|+++..... .+|+.++|..+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 456777776666666555331 12235689999999999999999998764 6899999987643211
Q ss_pred ----chHHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----C---CC
Q 042771 208 ----GESEK-------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-----H---ND 268 (436)
Q Consensus 208 ----g~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~---~~ 268 (436)
|.... .....|..| ..++||||||+.|. ..++..|+..++... . ..
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~------------~~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELA---DGGTLFLDEIGELS------------LEAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHT---TTSEEEEESGGGCC------------HHHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeC---CCcEEEEcChhhCC------------HHHHHHHHHHHhcCcEEeCCCCceee
Confidence 10000 001223333 34699999999983 334556666655311 1 11
Q ss_pred CceEEEeccCCC-------CcccHHHHhhccceEEcCCCCHH----HHHHHHHHHhC-------CCCCCCChhhHHHHHH
Q 042771 269 QKVLVLAATNTP-------YALDQAIRRRFDKRIYIPLPDLK----ARQHMFKVHLG-------DTPHNLTESDFESLAR 330 (436)
Q Consensus 269 ~~v~vi~ttn~~-------~~l~~~l~~Rf~~~i~~~~p~~~----~r~~il~~~l~-------~~~~~~~~~~~~~la~ 330 (436)
.++.||++||.. ..+.+.+..|+. .+.+..|... +...++++++. .....++++.+..|..
T Consensus 271 ~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 271 VNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 349 (387)
T ss_dssp CCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred ccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 257799999864 345677777774 4444555543 44445555442 2223478899999999
Q ss_pred HcCCCCHHHHHHHHHHHhhhH
Q 042771 331 KTEGFSGSDISVCVKDVLFEP 351 (436)
Q Consensus 331 ~t~g~s~~dl~~l~~~a~~~a 351 (436)
+.+..+.++|+++++.|+..+
T Consensus 350 ~~wpGNvreL~~~i~~~~~~~ 370 (387)
T 1ny5_A 350 YPWYGNVRELKNVIERAVLFS 370 (387)
T ss_dssp SCCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCcHHHHHHHHHHHHHHhC
Confidence 988888899999999988653
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.16 E-value=1.3e-10 Score=135.66 Aligned_cols=137 Identities=18% Similarity=0.306 Sum_probs=91.1
Q ss_pred cceEEecCCcchHHHHHHHHH-HHcCCceEEEeccchhhhhhchHHHHHHHHHHHHH---------------hcCCeEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVA-TEADSTFFSISSSDLVSKWMGESEKLVSSLFQMAR---------------ESAPSIIF 230 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia-~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~---------------~~~p~il~ 230 (436)
+++||+||||||||++|+.+. +..+..++.++++...+. ..+...+.... .+.+.|||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~------~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlF 1341 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTT------EHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLF 1341 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCH------HHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCH------HHHHHHHHHHhhhccccCCccccCCCCCceEEEE
Confidence 689999999999999995554 444677888887765431 22333333321 12346999
Q ss_pred EccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCC-------CCceEEEeccCCCC-----cccHHHHhhccceEEcC
Q 042771 231 IDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHN-------DQKVLVLAATNTPY-----ALDQAIRRRFDKRIYIP 298 (436)
Q Consensus 231 iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~-------~~~v~vi~ttn~~~-----~l~~~l~~Rf~~~i~~~ 298 (436)
|||+|.....+ .+.. ...+++.+++. ..+.... ..++.+|+|+|+|. .++++++||| .++.++
T Consensus 1342 iDEinmp~~d~--yg~q-~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~ 1416 (2695)
T 4akg_A 1342 CDEINLPKLDK--YGSQ-NVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLG 1416 (2695)
T ss_dssp EETTTCSCCCS--SSCC-HHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECC
T ss_pred ecccccccccc--cCch-hHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeC
Confidence 99998643222 1111 22333333332 1121111 13588999999994 8999999999 789999
Q ss_pred CCCHHHHHHHHHHHhC
Q 042771 299 LPDLKARQHMFKVHLG 314 (436)
Q Consensus 299 ~p~~~~r~~il~~~l~ 314 (436)
.|+.+++..|+..++.
T Consensus 1417 ~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1417 YPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCTTTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988774
No 101
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=1.1e-10 Score=98.56 Aligned_cols=106 Identities=18% Similarity=0.288 Sum_probs=67.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 241 (436)
+...++|+||+|+|||+|+++++..+ |..+++++..++... +....|.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh--
Confidence 34679999999999999999999987 667888888776543 1123467999999987632
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccC-CCCcc--cHHHHhhccceEEcC
Q 042771 242 GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATN-TPYAL--DQAIRRRFDKRIYIP 298 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn-~~~~l--~~~l~~Rf~~~i~~~ 298 (436)
.. ...+..+++.+. .. +...+|.|+| .|..+ .+.+++||..-..+.
T Consensus 98 ------~~-~~~l~~li~~~~---~~-g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 98 ------EE-QALLFSIFNRFR---NS-GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp ------HH-HHHHHHHHHHHH---HH-TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred ------HH-HHHHHHHHHHHH---Hc-CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 11 222333333322 11 2232444555 45333 289999997655554
No 102
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.10 E-value=8.1e-10 Score=107.41 Aligned_cols=193 Identities=17% Similarity=0.257 Sum_probs=122.8
Q ss_pred ccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCc--eEEEeccchhhhhh---
Q 042771 133 NDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADST--FFSISSSDLVSKWM--- 207 (436)
Q Consensus 133 ~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~--~~~v~~~~l~~~~~--- 207 (436)
..++|.......+...+...- .....++++|++||||+++|+++....+.. |+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 457787766666655543211 122469999999999999999999887543 99999987643211
Q ss_pred --chHHH-------HHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCC-----CC---CCc
Q 042771 208 --GESEK-------LVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVG-----HN---DQK 270 (436)
Q Consensus 208 --g~~~~-------~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----~~---~~~ 270 (436)
|.... .....|+.+ ..++||||||+.|. ..++..|+..++... .. .-+
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a---~~gtlfldei~~l~------------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELA---DQGTLFLDEVGELD------------QRVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHT---TTSEEEEETGGGSC------------HHHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhc---CCCeEEecChhhCC------------HHHHHHHHHHHHhCCcccCCCCcceeee
Confidence 10000 001123333 33599999999983 344566666665321 11 124
Q ss_pred eEEEeccCCC-------CcccHHHHhhccc-eEEcCCCCH--HHHHHHHHHHhC-------CCCCCCChhhHHHHHHHcC
Q 042771 271 VLVLAATNTP-------YALDQAIRRRFDK-RIYIPLPDL--KARQHMFKVHLG-------DTPHNLTESDFESLARKTE 333 (436)
Q Consensus 271 v~vi~ttn~~-------~~l~~~l~~Rf~~-~i~~~~p~~--~~r~~il~~~l~-------~~~~~~~~~~~~~la~~t~ 333 (436)
+.+|++||.. ..+.+.|..|+.. .|.+|+... ++...++++++. .....++++.+..|..+.+
T Consensus 264 ~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~w 343 (368)
T 3dzd_A 264 IRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEW 343 (368)
T ss_dssp CEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCC
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCC
Confidence 6788888854 2455677778753 345554433 444555555542 2335578999999999998
Q ss_pred CCCHHHHHHHHHHHhhh
Q 042771 334 GFSGSDISVCVKDVLFE 350 (436)
Q Consensus 334 g~s~~dl~~l~~~a~~~ 350 (436)
..+.++|+++++.++..
T Consensus 344 pGNvreL~n~i~~~~~~ 360 (368)
T 3dzd_A 344 KGNVRELKNLIERAVIL 360 (368)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 88889999999988754
No 103
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.09 E-value=2.1e-11 Score=91.69 Aligned_cols=81 Identities=20% Similarity=0.338 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhhhHHHhhhhhhhhhhhcCCCccCCCCCCchhhHh
Q 042771 303 KARQHMFKVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTSNGMWMPCGPKQSGAVQI 382 (436)
Q Consensus 303 ~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (436)
++|.+||+.++...+.. ++.++..|+..|.||||+||..+|++|++.++++..
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~-------------------------- 53 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNR-------------------------- 53 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc--------------------------
Confidence 46889999999876643 577899999999999999999999999999998753
Q ss_pred hHHHHhhhccccccCCCCcCHHHHHHHHhhC-CCCCCHHHHHHHH
Q 042771 383 SMQELAAKGLAEQILPPPISKTDFDKVLARQ-RPTVSKSDLEVQE 426 (436)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~vt~~d~~~al~~~-~ps~s~~~~~~y~ 426 (436)
..|+.+||..|+.++ .|+.+.++++.|.
T Consensus 54 ----------------~~i~~~df~~Al~~v~~~~~~~~~~~~y~ 82 (82)
T 2dzn_B 54 ----------------YVILQSDLEEAYATQVKTDNTVDKFDFYK 82 (82)
T ss_dssp ----------------SEECHHHHHHHHHTTCC------------
T ss_pred ----------------CCcCHHHHHHHHHHHHcCcCChHHHHhhC
Confidence 579999999999998 5889888888874
No 104
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.08 E-value=2.1e-09 Score=103.68 Aligned_cols=189 Identities=14% Similarity=0.137 Sum_probs=114.5
Q ss_pred CCCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh---
Q 042771 127 KPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV--- 203 (436)
Q Consensus 127 ~~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~--- 203 (436)
.|......++|.+...+.|.. +.. ..++|+||+|+|||+|++.+++.++..++++++....
T Consensus 7 ~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 70 (357)
T 2fna_A 7 SPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 70 (357)
T ss_dssp SCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhcccc
Confidence 345566789999988888876 421 3799999999999999999999987777888765420
Q ss_pred ----hhhhch---------------------------------------HHHHHHHHHHHHHhc--CCeEEEEccccccc
Q 042771 204 ----SKWMGE---------------------------------------SEKLVSSLFQMARES--APSIIFIDEIDSLC 238 (436)
Q Consensus 204 ----~~~~g~---------------------------------------~~~~~~~~~~~a~~~--~p~il~iDeid~l~ 238 (436)
..+... ....+..++...... .|.+|+|||++.+.
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~ 150 (357)
T 2fna_A 71 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 150 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhh
Confidence 000000 001233444444332 38899999999985
Q ss_pred cCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccH---------HHHhhccceEEcCCCCHHHHHHHH
Q 042771 239 GQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQ---------AIRRRFDKRIYIPLPDLKARQHMF 309 (436)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~---------~l~~Rf~~~i~~~~p~~~~r~~il 309 (436)
..... .....+..+ ++.. .++.+|+|++....+.. .+..|+...+.+++.+.++..+++
T Consensus 151 ~~~~~-----~~~~~l~~~---~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 151 KLRGV-----NLLPALAYA---YDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp GCTTC-----CCHHHHHHH---HHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred ccCch-----hHHHHHHHH---HHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 42111 011122222 2211 24556666654321111 123355568899999999999999
Q ss_pred HHHhCCCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 042771 310 KVHLGDTPHNLTESDFESLARKTEGFSGSDISVCVKD 346 (436)
Q Consensus 310 ~~~l~~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~ 346 (436)
...+.......++ ...+...+.|+ +.-+..++..
T Consensus 219 ~~~~~~~~~~~~~--~~~i~~~t~G~-P~~l~~~~~~ 252 (357)
T 2fna_A 219 RRGFQEADIDFKD--YEVVYEKIGGI-PGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHTCCCCC--HHHHHHHHCSC-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCc--HHHHHHHhCCC-HHHHHHHHHH
Confidence 8876432222222 37888899885 4456655544
No 105
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.01 E-value=5e-10 Score=99.40 Aligned_cols=102 Identities=17% Similarity=0.243 Sum_probs=63.2
Q ss_pred cCCCCccccccCcHH----HHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 126 EKPNVKWNDVAGLES----AKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 126 ~~~~~~~~dl~G~~~----~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
.....+|+++++... +.+.+..++.... ....+.+++|+||||||||+|++++++.+ +.+++.++
T Consensus 18 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 18 EILRASLSDVDLNDDGRIKAIRFAERFVAEYE--------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp GGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCC--------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHcCCHhhccCCChhHHHHHHHHHHHHHHhh--------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 335678999997542 3334444433210 01122689999999999999999999987 67888888
Q ss_pred ccchhhhhhchH-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 042771 199 SSDLVSKWMGES-EKLVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 199 ~~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
+.++........ ...+..++..... +.+|+|||++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCC
Confidence 877654332110 0001222333332 359999999765
No 106
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.89 E-value=5.4e-10 Score=104.79 Aligned_cols=119 Identities=18% Similarity=0.287 Sum_probs=66.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCc--eEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADST--FFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQR 241 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~--~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~ 241 (436)
.+.+.++|+||||||||+||.++|...+.+ |+.+...+..+.+....+..+..+++.+.... +||||+++.+....
T Consensus 121 ~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 121 YASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAA 198 (331)
T ss_dssp EESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC---
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccc
Confidence 344668999999999999999999875544 44442233333233445566666676666654 99999999986543
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHH
Q 042771 242 GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQA 286 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~ 286 (436)
..........+.+.+++..+.++.. ..++.+|+++| +...+++
T Consensus 199 ~~~s~~G~v~~~lrqlL~~L~~~~k-~~gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 199 GGNTTSGGISRGAFDLLSDIGAMAA-SRGCVVIASLN-PTSNDDK 241 (331)
T ss_dssp --------CCHHHHHHHHHHHHHHH-HHTCEEEEECC-CSSCSSS
T ss_pred ccccccchHHHHHHHHHHHHHHHHh-hCCCEEEEEeC-Ccccchh
Confidence 2210000111223334443333211 12456777777 4444443
No 107
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.89 E-value=2.2e-09 Score=94.76 Aligned_cols=128 Identities=19% Similarity=0.273 Sum_probs=79.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH--------cC-CceEEEeccchhhhhh----------chHHH--HHHHHHHHH--Hh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE--------AD-STFFSISSSDLVSKWM----------GESEK--LVSSLFQMA--RE 223 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~--------l~-~~~~~v~~~~l~~~~~----------g~~~~--~~~~~~~~a--~~ 223 (436)
...|++|+||||||++|..++.. .| .+++..++.++..... ..... ....++..+ ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 36889999999999999887544 24 6676676665532211 00000 012223321 23
Q ss_pred cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHH
Q 042771 224 SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 224 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~ 303 (436)
+.++||+|||++.+.+.+..... .. .++..++.. ....+-||.+++.+..++.++++|+...++++.|...
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e--~~-----rll~~l~~~--r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSK--IP-----ENVQWLNTH--RHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCC--CC-----HHHHGGGGT--TTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred cCceEEEEEChhhhccCccccch--hH-----HHHHHHHhc--CcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 44679999999999765422111 11 244444422 2334567778888999999999999988888776433
No 108
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.89 E-value=2.9e-08 Score=116.33 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=107.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 246 (436)
.+.++.||+|||||++++++|+.+|.+++.++|++-.. ...+..+|..+...+ +++++|||+.+.
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~-------- 710 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLD-------- 710 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSC--------
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcC--------
Confidence 57899999999999999999999999999999987553 234466666555443 699999999873
Q ss_pred chHHHHHHHH---HHHHhhcC----C------CCCCceEEEeccCCC----CcccHHHHhhccceEEcCCCCHHHHHHHH
Q 042771 247 SEASRRIKTE---LLVQMQGV----G------HNDQKVLVLAATNTP----YALDQAIRRRFDKRIYIPLPDLKARQHMF 309 (436)
Q Consensus 247 ~~~~~~~~~~---ll~~l~~~----~------~~~~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~il 309 (436)
.+....+... +...+... . ...+.+.|++|.|+. ..|++++++|| +.+.+..||.+...+|+
T Consensus 711 ~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 711 EKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence 2222222222 22222111 0 113456688888843 57999999999 68999999999988886
Q ss_pred HHHhCCCCCCCChhhH-------HHHHHHc-----CCCCHHHHHHHHHHHhh
Q 042771 310 KVHLGDTPHNLTESDF-------ESLARKT-----EGFSGSDISVCVKDVLF 349 (436)
Q Consensus 310 ~~~l~~~~~~~~~~~~-------~~la~~t-----~g~s~~dl~~l~~~a~~ 349 (436)
-....- ....... ..+.+.. ..|..+.++.++..|..
T Consensus 790 l~s~Gf---~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 790 LQIMGF---EDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp HHHHHC---SSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHhcCC---CchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 433211 1011111 1122222 23677888888876653
No 109
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.86 E-value=1.8e-09 Score=102.35 Aligned_cols=99 Identities=19% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCccccccCcH----HHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC----CceEEEec
Q 042771 128 PNVKWNDVAGLE----SAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD----STFFSISS 199 (436)
Q Consensus 128 ~~~~~~dl~G~~----~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~~ 199 (436)
.+.+|+++++.. .+.+.+..++... ...+..+++|+||||||||+||.++|+++. .+++.+++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 347899998643 2333344444321 111247899999999999999999998654 78888888
Q ss_pred cchhhhhhchH-HHHHHHHHHHHHhcCCeEEEEcccccc
Q 042771 200 SDLVSKWMGES-EKLVSSLFQMARESAPSIIFIDEIDSL 237 (436)
Q Consensus 200 ~~l~~~~~g~~-~~~~~~~~~~a~~~~p~il~iDeid~l 237 (436)
.++...+.... ...+..++.... .+.+|||||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCC
Confidence 77655432210 111122222222 3359999999754
No 110
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.81 E-value=6.6e-08 Score=93.09 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=107.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CC-ceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccc-cccC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DS-TFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDS-LCGQ 240 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~-~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~-l~~~ 240 (436)
.+.+|||||+|+||++.++.+++.+ +. ++..+.... . ......+..+...-......||+|||+|. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT-
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh-
Confidence 3689999999999999999998865 22 222221111 0 12222222222222334567999999997 631
Q ss_pred CCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC------CcccHHHHhhccceEEcCCCCHHHHHHHHHHHhC
Q 042771 241 RGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP------YALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLG 314 (436)
Q Consensus 241 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~------~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~ 314 (436)
...+.|+..++.. +..+++|.+++.+ ..+.+++.+|+ .++.+..++..+...+++..+.
T Consensus 92 -----------~~~~aLl~~le~p---~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 92 -----------AINEQLLTLTGLL---HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp -----------THHHHHHHHHTTC---BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHhcC---CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 1356677777743 3344444444432 46778899999 5889999999999999999888
Q ss_pred CCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHhh
Q 042771 315 DTPHNLTESDFESLARKTEGFSGSDISVCVKDVLF 349 (436)
Q Consensus 315 ~~~~~~~~~~~~~la~~t~g~s~~dl~~l~~~a~~ 349 (436)
..+..++++.+..|+..+.| +.+++.+.++....
T Consensus 157 ~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 157 QLNLELDDAANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 88888899999999999876 55555555554443
No 111
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.81 E-value=4.7e-09 Score=91.78 Aligned_cols=109 Identities=17% Similarity=0.216 Sum_probs=65.5
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGN 245 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~ 245 (436)
.+++|||||||||||++|.++|+.+...++.+..+. +.+. +..+. ...||+|||+|.-
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s~f~----------l~~l~--~~kIiiLDEad~~-------- 115 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--SHFW----------LEPLT--DTKVAMLDDATTT-------- 115 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--SCGG----------GGGGT--TCSSEEEEEECHH--------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--chhh----------hcccC--CCCEEEEECCCch--------
Confidence 367999999999999999999999876543321110 0000 11111 1249999999841
Q ss_pred CchHHHHHHHHHHHHhhcCC----CCC------CceEEEeccCCC---CcccHHHHhhccceEEcCCC
Q 042771 246 ESEASRRIKTELLVQMQGVG----HND------QKVLVLAATNTP---YALDQAIRRRFDKRIYIPLP 300 (436)
Q Consensus 246 ~~~~~~~~~~~ll~~l~~~~----~~~------~~v~vi~ttn~~---~~l~~~l~~Rf~~~i~~~~p 300 (436)
..+.+...+-+.+++.. ... ....+|.|||.. ...-+.|.+|+ ..+.|+.|
T Consensus 116 ---~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 116 ---CWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp ---HHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred ---hHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 22233334555666642 011 134678889874 33347888998 47777743
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.56 E-value=1.8e-07 Score=110.48 Aligned_cols=134 Identities=20% Similarity=0.304 Sum_probs=85.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc-CCceEEEeccchhhhhhchHHHHHHHHHHHH----H------------hcCCeEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA-DSTFFSISSSDLVSKWMGESEKLVSSLFQMA----R------------ESAPSII 229 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a----~------------~~~p~il 229 (436)
+++||+||||||||+++..+...+ +.+++.++++.-.+ ...+...++.. . .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC------HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 579999999999998887655554 55677788765432 12333333321 0 1223599
Q ss_pred EEccccccccCCCCCCCchHHHHHHHHHHHHhhc--CCC-------CCCceEEEeccCCC-----CcccHHHHhhccceE
Q 042771 230 FIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG--VGH-------NDQKVLVLAATNTP-----YALDQAIRRRFDKRI 295 (436)
Q Consensus 230 ~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~--~~~-------~~~~v~vi~ttn~~-----~~l~~~l~~Rf~~~i 295 (436)
||||++.-... ..+. ...+..|...++. ... ...++.+|+|+|+| ..++++++||| .++
T Consensus 1379 FiDDiNmp~~D--~yGt----Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi 1451 (3245)
T 3vkg_A 1379 FCDEINLPSTD--KYGT----QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PIL 1451 (3245)
T ss_dssp EETTTTCCCCC--TTSC----CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEE
T ss_pred EecccCCCCcc--cccc----ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEE
Confidence 99999853211 1111 1123333333331 111 12357899999988 47999999999 579
Q ss_pred EcCCCCHHHHHHHHHHHh
Q 042771 296 YIPLPDLKARQHMFKVHL 313 (436)
Q Consensus 296 ~~~~p~~~~r~~il~~~l 313 (436)
.++.|+.++...|+..++
T Consensus 1452 ~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999977654
No 113
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.51 E-value=3.2e-07 Score=83.93 Aligned_cols=29 Identities=31% Similarity=0.500 Sum_probs=25.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
.+..+++|+||||||||++|.++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33468999999999999999999998654
No 114
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.48 E-value=1.6e-06 Score=75.03 Aligned_cols=27 Identities=26% Similarity=0.506 Sum_probs=23.5
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCce
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTF 194 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~ 194 (436)
.+.|.||+|+|||||++.++..++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999876544
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.46 E-value=4.1e-07 Score=103.56 Aligned_cols=117 Identities=21% Similarity=0.285 Sum_probs=77.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh----hh------------hchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS----KW------------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~----~~------------~g~~~~~~~~~~~~a~ 222 (436)
+..++.+++|+||||||||+||.+++.+. |..+..++..+... .. ....+..+..++..++
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr 1502 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1502 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHh
Confidence 45567899999999999999999998775 55666666554321 11 1234567777788888
Q ss_pred hcCCeEEEEccccccccCC---C-CCCCch-HHHHHHHHHHHHhhcCCCCCCceEEEeccCCC
Q 042771 223 ESAPSIIFIDEIDSLCGQR---G-EGNESE-ASRRIKTELLVQMQGVGHNDQKVLVLAATNTP 280 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~~~---~-~~~~~~-~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 280 (436)
...|++||||+++.+.+.. + .+.... ...+++.+++..|.+.... .+++|| +||..
T Consensus 1503 ~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~-~~v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1503 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLI-FINQI 1563 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT-TTCEEE-EEECE
T ss_pred cCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHh-CCcEEE-EEccc
Confidence 8999999999999887632 1 111112 2456777777777665433 334444 44433
No 116
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.43 E-value=1.3e-06 Score=103.38 Aligned_cols=163 Identities=16% Similarity=0.207 Sum_probs=105.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNE 246 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~ 246 (436)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-... ..+..+|.-+... ++..++|||+.+ .
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~~~-GaW~cfDEfNrl--------~ 669 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLCQC-GAWGCFDEFNRL--------E 669 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHHHH-TCEEEEETTTSS--------C
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHhhc-CcEEEehhhhcC--------C
Confidence 356789999999999999999999999999999875432 3455566655443 369999999987 2
Q ss_pred chHHHHHHHHHH---HHhh----------cC-CCCCCceEEEeccCCC----CcccHHHHhhccceEEcCCCCHHHHHHH
Q 042771 247 SEASRRIKTELL---VQMQ----------GV-GHNDQKVLVLAATNTP----YALDQAIRRRFDKRIYIPLPDLKARQHM 308 (436)
Q Consensus 247 ~~~~~~~~~~ll---~~l~----------~~-~~~~~~v~vi~ttn~~----~~l~~~l~~Rf~~~i~~~~p~~~~r~~i 308 (436)
.+....+..++. ..+. |. ..-.+.+.|++|.|+. ..|++.+++|| +.+.+..||.+...+|
T Consensus 670 ~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei 748 (3245)
T 3vkg_A 670 ERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQV 748 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHH
Confidence 223222222221 1111 10 0112356788888853 58999999999 6799999999998888
Q ss_pred HHHHhCCCCCCCChh------hHHHHHH------HcCCCCHHHHHHHHHHHh
Q 042771 309 FKVHLGDTPHNLTES------DFESLAR------KTEGFSGSDISVCVKDVL 348 (436)
Q Consensus 309 l~~~l~~~~~~~~~~------~~~~la~------~t~g~s~~dl~~l~~~a~ 348 (436)
+-.-.. ..-... .+-.|+. ....|.-+.++.++..|.
T Consensus 749 ~L~s~G---f~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG 797 (3245)
T 3vkg_A 749 MLYSQG---FKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAG 797 (3245)
T ss_dssp HHHTTT---CSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHHcc---cchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHH
Confidence 644321 110111 1112222 123467788888887765
No 117
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.30 E-value=6.8e-06 Score=63.82 Aligned_cols=74 Identities=18% Similarity=0.291 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCC------H--HHHHHHHHHHHHHHHHHHHHHHhhhC
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKN------P--KIKEAITQKFTEYLRRAEEIRAVLDD 75 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d------~--~~~~~~~~k~~~y~~rae~lk~~l~~ 75 (436)
..+++|+.+|.+|+..|+.|+.++|+.+|+++|+.|.+++....+ + ..-..+++||.+-+..+++.-..|.+
T Consensus 17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~ 96 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK 96 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999866542 1 22334788888888777776666654
Q ss_pred CC
Q 042771 76 GG 77 (436)
Q Consensus 76 ~~ 77 (436)
..
T Consensus 97 ~~ 98 (116)
T 2dl1_A 97 GL 98 (116)
T ss_dssp HH
T ss_pred cC
Confidence 43
No 118
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.10 E-value=1.7e-06 Score=83.69 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=66.9
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchhhhhhchHHHHHHHHHHHHHhcCCeEEEEcccccccc-CC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCG-QR 241 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~-~~ 241 (436)
..++..++|+||||+|||||+++++..++..++.+....-. ....+..+| ...++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~~~~lg~~~------q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------LNFELGVAI------DQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------HHHHHGGGT------TCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------HHHHHHHhc------chhHHHHHHHHHHHHHHh
Confidence 45557899999999999999999999988776654433211 011122222 335789999998765 22
Q ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHh--hccceEEc
Q 042771 242 GEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRR--RFDKRIYI 297 (436)
Q Consensus 242 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~~i~~ 297 (436)
......... ....+...++|. +.|++++|+++.+ +++++ |++..++.
T Consensus 234 ~l~~~~~~~--~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 234 DLPSGQGIN--NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp TCCCCSHHH--HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred hccccCcch--HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 111011110 123344445542 4577788888887 45544 55444444
No 119
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.08 E-value=2.6e-05 Score=69.92 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=27.6
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
..+...++|+||+|+|||+|++.++..+ +..++.++
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3445679999999999999999998654 45555554
No 120
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.07 E-value=6.9e-05 Score=77.26 Aligned_cols=176 Identities=13% Similarity=0.106 Sum_probs=100.1
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH-------cCCceEEEeccc
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE-------ADSTFFSISSSD 201 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~-------l~~~~~~v~~~~ 201 (436)
+.....++|.+...+.|...+... ....+.++|+||+|+|||+||..+++. +...++.++...
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 345567999999999999877431 122367999999999999999998642 222334433322
Q ss_pred h-----hhhh------h-----------chHHHHHHHHHHHHHh-cCCeEEEEccccccccCCCCCCCchHHHHHHHHHH
Q 042771 202 L-----VSKW------M-----------GESEKLVSSLFQMARE-SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELL 258 (436)
Q Consensus 202 l-----~~~~------~-----------g~~~~~~~~~~~~a~~-~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll 258 (436)
. ...+ . .........+...... ..|.+|+|||++.. . .+
T Consensus 190 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------------~-~l 251 (591)
T 1z6t_A 190 QDKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------------W-VL 251 (591)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------------H-HH
T ss_pred CchHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------------H-HH
Confidence 1 1000 0 0111222222222222 26789999999742 1 11
Q ss_pred HHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEc---CCCCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCC
Q 042771 259 VQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYI---PLPDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGF 335 (436)
Q Consensus 259 ~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~---~~p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~ 335 (436)
+.+ ..+..||+||........ + + ...+.+ ...+.++-.+++...+...... .......|++.+.|.
T Consensus 252 ---~~l---~~~~~ilvTsR~~~~~~~-~--~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~-~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 252 ---KAF---DSQCQILLTTRDKSVTDS-V--M-GPKYVVPVESSLGKEKGLEILSLFVNMKKAD-LPEQAHSIIKECKGS 320 (591)
T ss_dssp ---HTT---CSSCEEEEEESCGGGGTT-C--C-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGG-SCTHHHHHHHHHTTC
T ss_pred ---HHh---cCCCeEEEECCCcHHHHh-c--C-CCceEeecCCCCCHHHHHHHHHHHhCCCccc-ccHHHHHHHHHhCCC
Confidence 122 234567777765432110 0 0 223333 3678888889998877542211 245678899999885
Q ss_pred CHHHHHHHH
Q 042771 336 SGSDISVCV 344 (436)
Q Consensus 336 s~~dl~~l~ 344 (436)
+-.|..+.
T Consensus 321 -PLal~~~a 328 (591)
T 1z6t_A 321 -PLVVSLIG 328 (591)
T ss_dssp -HHHHHHHH
T ss_pred -cHHHHHHH
Confidence 43444443
No 121
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.03 E-value=2.3e-05 Score=75.09 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh----------------hhchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK----------------WMGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~----------------~~g~~~~~~~~~~~~a~ 222 (436)
+..+...++|+||||+|||+|+..++..+ +..+++++....... .....+..+..+....+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 44555779999999999999999998874 567777776542110 01122333333333344
Q ss_pred hcCCeEEEEcccccccc
Q 042771 223 ESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~ 239 (436)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999998875
No 122
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.97 E-value=5e-05 Score=67.51 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=32.2
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+..+..-++|+||||+|||+|+..++...+..+++++...
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 4455567999999999999999999986567777777543
No 123
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.93 E-value=4.9e-05 Score=73.26 Aligned_cols=78 Identities=22% Similarity=0.293 Sum_probs=51.4
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh----------------hchHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----------------MGESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----------------~g~~~~~~~~~~~~a~ 222 (436)
+..+...++|+||||+|||+||..++..+ +.++++++...-.... ....+..+..+....+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 33455679999999999999999998764 5677777754322111 0112333333333334
Q ss_pred hcCCeEEEEcccccccc
Q 042771 223 ESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~ 239 (436)
...+.+|+||.+..+.+
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 56788999999999875
No 124
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.93 E-value=1.9e-05 Score=79.01 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=36.3
Q ss_pred ccccccCCCCcccccc-CcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 121 SAIIREKPNVKWNDVA-GLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 121 ~~~~~~~~~~~~~dl~-G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+.+..++.+.+|+++- ++..+...+...+.. ....++|.||||||||+++.+++..+
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4567788889999885 566666655554432 11379999999999999999999876
No 125
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.88 E-value=3.8e-05 Score=69.45 Aligned_cols=78 Identities=15% Similarity=0.221 Sum_probs=50.5
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHH--c-------CCceEEEeccch--hh-------hh-----------------
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATE--A-------DSTFFSISSSDL--VS-------KW----------------- 206 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~--l-------~~~~~~v~~~~l--~~-------~~----------------- 206 (436)
+..+...++|+||||+|||+|++.++.. + +...++++.... .. .+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4455567999999999999999999985 3 456677765441 00 00
Q ss_pred -hchHHHHHHHHHHHHHhcCCeEEEEcccccccc
Q 042771 207 -MGESEKLVSSLFQMARESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 207 -~g~~~~~~~~~~~~a~~~~p~il~iDeid~l~~ 239 (436)
..+....+..+...+....|.+|+||++..+..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~ 133 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYR 133 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHH
Confidence 000111223344455556889999999998764
No 126
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.85 E-value=0.00047 Score=61.28 Aligned_cols=121 Identities=19% Similarity=0.255 Sum_probs=66.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEecc--------chhhhhh----------ch--HHHHHHHHHHHHHh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS--------DLVSKWM----------GE--SEKLVSSLFQMARE 223 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~--------~l~~~~~----------g~--~~~~~~~~~~~a~~ 223 (436)
..+++.|+|||||||++-.+|..+ |..++.+... .+..... +. .+..+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH----
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh----
Confidence 579999999999999999998775 5565544432 1111000 00 0111222222
Q ss_pred cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCC------------------CcccH
Q 042771 224 SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTP------------------YALDQ 285 (436)
Q Consensus 224 ~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~------------------~~l~~ 285 (436)
..|.+++|||+-........ .......+ ...+. ..+-+++|+|-. +.++.
T Consensus 83 ~~pdlvIVDElG~~~~~~~r--~~~~~qDV----~~~l~------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd 150 (228)
T 2r8r_A 83 AAPSLVLVDELAHTNAPGSR--HTKRWQDI----QELLA------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPD 150 (228)
T ss_dssp HCCSEEEESCTTCBCCTTCS--SSBHHHHH----HHHHH------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCH
T ss_pred cCCCEEEEeCCCCCCcccch--hHHHHHHH----HHHHc------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCcc
Confidence 36889999998764222111 11112222 11221 224466666622 45667
Q ss_pred HHHhhccceEEcCCCCHH
Q 042771 286 AIRRRFDKRIYIPLPDLK 303 (436)
Q Consensus 286 ~l~~Rf~~~i~~~~p~~~ 303 (436)
.++.+.+.+..++.|..+
T Consensus 151 ~~~~~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 151 WVLQEAFDLVLIDLPPRE 168 (228)
T ss_dssp HHHHTCSEEEEBCCCHHH
T ss_pred HHHhhCCeEEEecCCHHH
Confidence 777788777777777665
No 127
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.85 E-value=5.1e-05 Score=68.88 Aligned_cols=26 Identities=31% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia 187 (436)
+..+...+.|.||+|+|||||++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 44555679999999999999999998
No 128
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.84 E-value=1.5e-05 Score=69.19 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=59.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc--------hhhhhhch-----HHHHHHHHHHHHHhcCCeEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD--------LVSKWMGE-----SEKLVSSLFQMARESAPSIIF 230 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~--------l~~~~~g~-----~~~~~~~~~~~a~~~~p~il~ 230 (436)
.-++++||+|+||||++..++..+ +..++.+.+.. +.+. .+. .......++..+. ..+.+|+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~-~g~~~~~~~~~~~~~~~~~~~-~~~dvvi 81 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSH-SGNGVEAHVIERPEEMRKYIE-EDTRGVF 81 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC-----CEECEEESSGGGGGGGCC-TTEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEec-CCCceeeEEECCHHHHHHHhc-CCCCEEE
Confidence 457899999999999997666543 55554443220 0000 000 0000112222221 2457999
Q ss_pred EccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEecc-C---CCCcccHHHHhhccceEEcC
Q 042771 231 IDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAAT-N---TPYALDQAIRRRFDKRIYIP 298 (436)
Q Consensus 231 iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt-n---~~~~l~~~l~~Rf~~~i~~~ 298 (436)
|||++.+.+ .+...+....+ ....+++.+.+ + .++...+.++++.+.+..+.
T Consensus 82 IDE~Q~~~~------------~~~~~l~~l~~----~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 82 IDEVQFFNP------------SLFEVVKDLLD----RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp ECCGGGSCT------------THHHHHHHHHH----TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred EECcccCCH------------HHHHHHHHHHH----CCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 999998621 12233322333 12223333332 2 55677788888887666653
No 129
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=97.84 E-value=7.9e-05 Score=54.98 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHHhcccCCH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 042771 4 NFKEQAIEYVKQAVQEDNA---GNYAKAFPLYMNALEYFKTHLKYEKNP-----KIKEAITQKFTEYLRRAEEIRAVL 73 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~---g~~~~a~~~y~~a~~~l~~~~~~~~d~-----~~~~~~~~k~~~y~~rae~lk~~l 73 (436)
+.+++|+.+|.+|...|+. |+.++|+.+|.++++.|.+++.-..+. ..-..+++|+.+-+..++..-..|
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL~~L 88 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQLL 88 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999 999999999999999999998654331 233457888888888777655443
No 130
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.83 E-value=5e-05 Score=72.86 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=50.9
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh----hc------------hHHHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----MG------------ESEKLVSSLFQMAR 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----~g------------~~~~~~~~~~~~a~ 222 (436)
+..+...++|+||||+|||+|+..++..+ +..+++++........ .| ..+..+..+...+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34455679999999999999999998654 5667777654321110 01 12233333333444
Q ss_pred hcCCeEEEEcccccccc
Q 042771 223 ESAPSIIFIDEIDSLCG 239 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~ 239 (436)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
No 131
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.82 E-value=4.5e-05 Score=65.47 Aligned_cols=34 Identities=18% Similarity=0.375 Sum_probs=30.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..|+|+|+||+||||+++.+++.++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 4699999999999999999999999888876644
No 132
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.79 E-value=4.4e-05 Score=68.24 Aligned_cols=71 Identities=17% Similarity=0.171 Sum_probs=44.0
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc-------hhhhhhchH-----HHHHHHHHHHHHh----cCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD-------LVSKWMGES-----EKLVSSLFQMARE----SAP 226 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~-------l~~~~~g~~-----~~~~~~~~~~a~~----~~p 226 (436)
..-++++||+|+||||++..++..+ +..++.+++.. +.+.. |.. -.....++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srl-G~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRT-GTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCC-CCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhc-CCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 3568889999999999999888765 55666654221 11110 100 0011245555544 357
Q ss_pred eEEEEcccccc
Q 042771 227 SIIFIDEIDSL 237 (436)
Q Consensus 227 ~il~iDeid~l 237 (436)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999976
No 133
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.75 E-value=0.00017 Score=65.18 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=28.8
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
++..+...++|+||||+|||+++..++... +..+++++.
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 344555679999999999999998887643 556666553
No 134
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.74 E-value=6e-05 Score=71.63 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=52.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccchh--h-------hh------------h---c
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSDLV--S-------KW------------M---G 208 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~l~--~-------~~------------~---g 208 (436)
+..+...++|+||||+|||+++..++... +..+++++..... . .+ + .
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 44555679999999999999999999874 5567777765420 0 00 0 0
Q ss_pred hHH---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 042771 209 ESE---KLVSSLFQMARE-SAPSIIFIDEIDSLCG 239 (436)
Q Consensus 209 ~~~---~~~~~~~~~a~~-~~p~il~iDeid~l~~ 239 (436)
..+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011 223344445555 6789999999998864
No 135
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.74 E-value=0.00038 Score=71.09 Aligned_cols=166 Identities=13% Similarity=0.053 Sum_probs=92.0
Q ss_pred cCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHH----HcCCce---EEEeccch-----h
Q 042771 136 AGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVAT----EADSTF---FSISSSDL-----V 203 (436)
Q Consensus 136 ~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~----~l~~~~---~~v~~~~l-----~ 203 (436)
+|.+..++.|...+... .....+.+.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 49999999998877431 112336799999999999999999997 332222 22332221 0
Q ss_pred ---hhh---hc--------------hHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhc
Q 042771 204 ---SKW---MG--------------ESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQG 263 (436)
Q Consensus 204 ---~~~---~g--------------~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~ 263 (436)
... .+ ........+.......++.+|+||+++... .+ .+. ..
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~-------------~~--~~~-~~-- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE-------------TI--RWA-QE-- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH-------------HH--HHH-HH--
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch-------------hh--ccc-cc--
Confidence 000 00 001112223333322237899999998630 11 111 11
Q ss_pred CCCCCCceEEEeccCCCCcccHHHHhhccceEEcCCCCHHHHHHHHHHHhCCCCC-CCChhhHHHHHHHcCCC
Q 042771 264 VGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPH-NLTESDFESLARKTEGF 335 (436)
Q Consensus 264 ~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~p~~~~r~~il~~~l~~~~~-~~~~~~~~~la~~t~g~ 335 (436)
....||.||....-.. . .......+.++..+.++-.++|..+...... .-.......|++.+.|.
T Consensus 264 -----~gs~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 264 -----LRLRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp -----TTCEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred -----CCCEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 2345777776532111 0 0012246888999999999999887433221 11123466788888875
No 136
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.73 E-value=0.00034 Score=78.33 Aligned_cols=172 Identities=12% Similarity=0.089 Sum_probs=100.4
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc-------CCceEEEecc
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA-------DSTFFSISSS 200 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l-------~~~~~~v~~~ 200 (436)
.+.....++|.+...+.|.+.+... ....+-+.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 4455667999999999999877432 1223568999999999999999987652 2233344433
Q ss_pred chhh-----hh----------------hchHHHHHHHHHHHHHh--cCCeEEEEccccccccCCCCCCCchHHHHHHHHH
Q 042771 201 DLVS-----KW----------------MGESEKLVSSLFQMARE--SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTEL 257 (436)
Q Consensus 201 ~l~~-----~~----------------~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~l 257 (436)
.... .. .......+...+..... ..+.+|+||+++.. .
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------------~-- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------------W-- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------------H--
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------------H--
Confidence 2100 00 00011112222222222 23679999999853 1
Q ss_pred HHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccceEEcCC-CCHHHHHHHHHHHhCCCCCCCChhhHHHHHHHcCCCC
Q 042771 258 LVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPL-PDLKARQHMFKVHLGDTPHNLTESDFESLARKTEGFS 336 (436)
Q Consensus 258 l~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~~i~~~~-p~~~~r~~il~~~l~~~~~~~~~~~~~~la~~t~g~s 336 (436)
.++.+ .+...||.||..+.-... .......+.++. .+.++-.++|..+....... .......|++.+.|..
T Consensus 250 --~~~~~---~~~~~ilvTtR~~~~~~~--~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 --VLKAF---DNQCQILLTTRDKSVTDS--VMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSP 321 (1249)
T ss_dssp --HHTTT---CSSCEEEEEESSTTTTTT--CCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCH
T ss_pred --HHHhh---cCCCEEEEEcCCHHHHHh--hcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCH
Confidence 11222 233467778875532210 012235667775 88888888888877544333 2345788999998853
No 137
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.71 E-value=0.00039 Score=60.40 Aligned_cols=116 Identities=12% Similarity=0.129 Sum_probs=70.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEecc---------chhhhhh-----------------chHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS---------DLVSKWM-----------------GESEKLVSSL 217 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~---------~l~~~~~-----------------g~~~~~~~~~ 217 (436)
..|++|+++|.||||+|-.+|-.. |..+..+... .+...+. ..........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 579999999999999999998764 6666666321 1222220 0112334445
Q ss_pred HHHHHh----cCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCcccHHHHhhccc
Q 042771 218 FQMARE----SAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDK 293 (436)
Q Consensus 218 ~~~a~~----~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~l~~~l~~Rf~~ 293 (436)
+..++. ....+|+|||+.....-.--+ ...++..+.. .+...-||.|+|.+ ++.|+..-|.
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~---------~~ev~~~l~~---Rp~~~~vIlTGr~a---p~~l~e~AD~ 173 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLP---------LEEVISALNA---RPGHQTVIITGRGC---HRDILDLADT 173 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSC---------HHHHHHHHHT---SCTTCEEEEECSSC---CHHHHHHCSE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCC---------HHHHHHHHHh---CcCCCEEEEECCCC---cHHHHHhCcc
Confidence 555543 357899999996542221111 2345555553 34567788888864 6777777666
Q ss_pred eEEc
Q 042771 294 RIYI 297 (436)
Q Consensus 294 ~i~~ 297 (436)
+-++
T Consensus 174 VTem 177 (196)
T 1g5t_A 174 VSEL 177 (196)
T ss_dssp EEEC
T ss_pred eeee
Confidence 6555
No 138
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.69 E-value=0.00011 Score=70.51 Aligned_cols=78 Identities=17% Similarity=0.215 Sum_probs=51.4
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccchhh---------hh-----------------
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSDLVS---------KW----------------- 206 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~l~~---------~~----------------- 206 (436)
+..+..-++|+||||+|||+|+..+|... +..+++++...... .+
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 45556779999999999999999999862 45677777554200 00
Q ss_pred -hchHHHHHHHHHHHHHh--cCCeEEEEcccccccc
Q 042771 207 -MGESEKLVSSLFQMARE--SAPSIIFIDEIDSLCG 239 (436)
Q Consensus 207 -~g~~~~~~~~~~~~a~~--~~p~il~iDeid~l~~ 239 (436)
..+....+..+...+.. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 00111222333444555 6788999999998864
No 139
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.68 E-value=8.1e-05 Score=71.50 Aligned_cols=77 Identities=25% Similarity=0.338 Sum_probs=49.8
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh----hc------------hHHHHHHHHHHHHHh
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----MG------------ESEKLVSSLFQMARE 223 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----~g------------~~~~~~~~~~~~a~~ 223 (436)
..+...++|+||||+|||+||..++..+ +..+++++........ .+ ..+.....+-..++.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 3455679999999999999999998764 5677777764321110 00 112222222223345
Q ss_pred cCCeEEEEcccccccc
Q 042771 224 SAPSIIFIDEIDSLCG 239 (436)
Q Consensus 224 ~~p~il~iDeid~l~~ 239 (436)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6788999999999874
No 140
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.68 E-value=0.00044 Score=69.86 Aligned_cols=74 Identities=12% Similarity=0.249 Sum_probs=51.4
Q ss_pred eEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC--cccHHHHhhccceEEcCCCCHHH
Q 042771 227 SIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY--ALDQAIRRRFDKRIYIPLPDLKA 304 (436)
Q Consensus 227 ~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~--~l~~~l~~Rf~~~i~~~~p~~~~ 304 (436)
-+|+|||++.|+.... ......+..+...- ..-.+.+|++|..|. .++..+++.|...|.+...+..+
T Consensus 345 ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G-----Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~D 414 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG-----KKVEELIARIAQKA-----RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKID 414 (574)
T ss_dssp EEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC-----TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHH
T ss_pred EEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH-----hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHH
Confidence 5899999998864321 11222222232221 234588888888887 89999999999999999999988
Q ss_pred HHHHHH
Q 042771 305 RQHMFK 310 (436)
Q Consensus 305 r~~il~ 310 (436)
...|+.
T Consensus 415 sr~ILd 420 (574)
T 2iut_A 415 SRTILD 420 (574)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 887773
No 141
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.64 E-value=2.6e-05 Score=67.48 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=29.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
+..|+|+|||||||||+++.+|+.++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999998887654
No 142
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.64 E-value=0.00016 Score=70.53 Aligned_cols=80 Identities=25% Similarity=0.314 Sum_probs=49.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccchhhh--------hhc---------------
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSDLVSK--------WMG--------------- 208 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~l~~~--------~~g--------------- 208 (436)
++..+..-++|+||||+|||+|++.++-.. +...++++..+.... ..+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~ 252 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARA 252 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEEC
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEecc
Confidence 345555679999999999999999776432 234677765432100 000
Q ss_pred ----hHHHHHHHHHHHHHhcCCeEEEEccccccccC
Q 042771 209 ----ESEKLVSSLFQMARESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 209 ----~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~ 240 (436)
.....+..+...+....|.+|+||++-.++..
T Consensus 253 ~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 253 YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01122233344445568899999999887653
No 143
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.62 E-value=0.00085 Score=65.94 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=50.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh--------------------hhchHHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK--------------------WMGESEKLVSSLFQMA 221 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~--------------------~~g~~~~~~~~~~~~a 221 (436)
++..+++.|++|+||||++..+|..+ |..+..+.+..+... ........+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999876 556666654332110 0112344556667777
Q ss_pred HhcCCeEEEEcccccc
Q 042771 222 RESAPSIIFIDEIDSL 237 (436)
Q Consensus 222 ~~~~p~il~iDeid~l 237 (436)
....+.+|+||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7766789999987544
No 144
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.59 E-value=0.0013 Score=61.58 Aligned_cols=73 Identities=15% Similarity=0.243 Sum_probs=46.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh-------h-------------hchHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK-------W-------------MGESEKLVSSLFQM 220 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~-------~-------------~g~~~~~~~~~~~~ 220 (436)
.++..++|.||+|+||||++..+|..+ +..+..+++..+... | .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345679999999999999999999875 455655554322110 1 01122222333444
Q ss_pred HHhcCCeEEEEccccc
Q 042771 221 ARESAPSIIFIDEIDS 236 (436)
Q Consensus 221 a~~~~p~il~iDeid~ 236 (436)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5566788999998753
No 145
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.58 E-value=0.00015 Score=64.78 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+..+..-+.|.||+|+|||||++.++..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 44555679999999999999999999853
No 146
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.58 E-value=0.00021 Score=66.81 Aligned_cols=78 Identities=18% Similarity=0.264 Sum_probs=49.2
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEeccchhhh-h---------------hchHHHHHHHHHHH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSISSSDLVSK-W---------------MGESEKLVSSLFQM 220 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~~~~l~~~-~---------------~g~~~~~~~~~~~~ 220 (436)
+..+. .++|+||||+|||+|+-.++..+ +..+++++..+-... + ....+.....+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 33444 68999999999999988876653 567788876532110 0 00122220122222
Q ss_pred ---HHhcCCeEEEEccccccccC
Q 042771 221 ---ARESAPSIIFIDEIDSLCGQ 240 (436)
Q Consensus 221 ---a~~~~p~il~iDeid~l~~~ 240 (436)
++...|.+|+||-|..|.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 35568999999999999753
No 147
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=3.8e-05 Score=67.48 Aligned_cols=35 Identities=29% Similarity=0.436 Sum_probs=29.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+...|+|.|||||||||+++.+++.++.+++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 34468999999999999999999999998876543
No 148
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.55 E-value=0.00015 Score=83.02 Aligned_cols=115 Identities=17% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhhh----hc--------hHHHHHHHHHHHHH----
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSKW----MG--------ESEKLVSSLFQMAR---- 222 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~~----~g--------~~~~~~~~~~~~a~---- 222 (436)
+..+...++|+|+||+|||+||..+|..+ +.++++++..+....+ .| ..+..+..++..++
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 45566789999999999999999999876 4568888876544332 11 01111333344333
Q ss_pred hcCCeEEEEcccccccc-CC---CCCC-CchHHHHHHHHHHHHhhcCCCCCCceEEEecc
Q 042771 223 ESAPSIIFIDEIDSLCG-QR---GEGN-ESEASRRIKTELLVQMQGVGHNDQKVLVLAAT 277 (436)
Q Consensus 223 ~~~p~il~iDeid~l~~-~~---~~~~-~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~tt 277 (436)
...|++||||.++.+.. .. ..++ ......+.++.++..|..+... .++.||++.
T Consensus 808 ~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAke-~~v~VI~l~ 866 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ-SNTLLIFIN 866 (2050)
T ss_dssp HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHT-TTCEEEEEE
T ss_pred ccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHH-hCCEEEEec
Confidence 36789999999999975 21 1111 1123334456666666554332 335555554
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.55 E-value=0.00035 Score=63.80 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=32.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
..+..++|.||||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344679999999999999999999999876777776655
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.54 E-value=0.00022 Score=66.42 Aligned_cols=38 Identities=34% Similarity=0.533 Sum_probs=31.2
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
.+..++|.||||+||||+++.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34679999999999999999999998656677776444
No 151
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.51 E-value=0.00027 Score=67.79 Aligned_cols=41 Identities=22% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc---------CCceEEEeccc
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA---------DSTFFSISSSD 201 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l---------~~~~~~v~~~~ 201 (436)
++..+...+.|+||+|+|||+|++.++... +..+++++..+
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 345566779999999999999999999876 24556776543
No 152
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.49 E-value=6.8e-05 Score=64.56 Aligned_cols=32 Identities=31% Similarity=0.619 Sum_probs=28.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
...|+|+|+||+||||+++.+++.++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 35799999999999999999999998777654
No 153
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=8.3e-05 Score=64.59 Aligned_cols=33 Identities=30% Similarity=0.385 Sum_probs=28.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.+..|+|.|+||+||||+++.++..++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 346799999999999999999999998776653
No 154
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=7.1e-05 Score=63.71 Aligned_cols=31 Identities=26% Similarity=0.222 Sum_probs=27.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998876655
No 155
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.47 E-value=6.1e-05 Score=70.95 Aligned_cols=34 Identities=35% Similarity=0.530 Sum_probs=30.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
..++|+||+|||||+|++.+|+.++..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 4699999999999999999999999888887654
No 156
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.46 E-value=0.00014 Score=74.43 Aligned_cols=33 Identities=42% Similarity=0.412 Sum_probs=26.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
..++|.||||||||+++.+++..+ +..++.+.+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~Ap 240 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAP 240 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecC
Confidence 579999999999999999998754 556665543
No 157
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.44 E-value=0.00059 Score=61.59 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.++++||+|+|||.++.+++..++..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 499999999999999999999887777766544
No 158
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.43 E-value=0.00021 Score=67.73 Aligned_cols=78 Identities=14% Similarity=0.209 Sum_probs=50.2
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---------------C----CceEEEeccchh--hh---h---hc------
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---------------D----STFFSISSSDLV--SK---W---MG------ 208 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---------------~----~~~~~v~~~~l~--~~---~---~g------ 208 (436)
+..+..-++|+||||+|||+++..+|... | ..+++++...-. .. + .+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34555679999999999999999998753 2 467777755421 10 0 00
Q ss_pred ----------hHH---HHHHHHHHHHHh-cCCeEEEEcccccccc
Q 042771 209 ----------ESE---KLVSSLFQMARE-SAPSIIFIDEIDSLCG 239 (436)
Q Consensus 209 ----------~~~---~~~~~~~~~a~~-~~p~il~iDeid~l~~ 239 (436)
..+ ..+..+...+.. ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011 123334444555 6778999999998864
No 159
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.43 E-value=0.0016 Score=65.23 Aligned_cols=76 Identities=16% Similarity=0.346 Sum_probs=49.8
Q ss_pred Ce-EEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCC--cccHHHHhhccceEEcCCCCH
Q 042771 226 PS-IIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPY--ALDQAIRRRFDKRIYIPLPDL 302 (436)
Q Consensus 226 p~-il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~--~l~~~l~~Rf~~~i~~~~p~~ 302 (436)
|. +|+|||+..++.. ....+ ..++..+-... ..-.+.+|.+|..|. .++..+++.|...|.|...+.
T Consensus 297 P~ivlvIDE~~~ll~~--------~~~~~-~~~l~~Lar~g-Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~ 366 (512)
T 2ius_A 297 PYIVVLVDEFADLMMT--------VGKKV-EELIARLAQKA-RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSK 366 (512)
T ss_dssp CEEEEEEETHHHHHHH--------HHHHH-HHHHHHHHHHC-GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSH
T ss_pred CcEEEEEeCHHHHHhh--------hhHHH-HHHHHHHHHHh-hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCH
Confidence 43 8999999877531 11122 22222221111 122467778888876 688889999999999999999
Q ss_pred HHHHHHHHH
Q 042771 303 KARQHMFKV 311 (436)
Q Consensus 303 ~~r~~il~~ 311 (436)
.+...|+..
T Consensus 367 ~dsr~ilg~ 375 (512)
T 2ius_A 367 IDSRTILDQ 375 (512)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHhcCC
Confidence 998888743
No 160
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=8.9e-05 Score=63.52 Aligned_cols=30 Identities=37% Similarity=0.556 Sum_probs=27.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.++|.||||+||||+++.+|+.++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 699999999999999999999999877653
No 161
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.42 E-value=7.8e-05 Score=64.41 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=28.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35999999999999999999999998876543
No 162
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.42 E-value=0.0011 Score=61.30 Aligned_cols=29 Identities=31% Similarity=0.295 Sum_probs=23.8
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+..+...++|+||+|+|||||+..++..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 33455679999999999999999998643
No 163
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.42 E-value=0.00056 Score=61.82 Aligned_cols=39 Identities=23% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHH----cCCceEEEec
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATE----ADSTFFSISS 199 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~----l~~~~~~v~~ 199 (436)
++..+..-++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 45556677999999999999999887643 2566666653
No 164
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.41 E-value=0.00011 Score=62.63 Aligned_cols=30 Identities=33% Similarity=0.702 Sum_probs=26.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..+.|.||+||||||+++.++..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999876553
No 165
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.40 E-value=7.9e-05 Score=63.36 Aligned_cols=32 Identities=25% Similarity=0.365 Sum_probs=28.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.+++|.|++||||||+++.+|..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 57999999999999999999999999887643
No 166
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=8.5e-05 Score=64.32 Aligned_cols=32 Identities=31% Similarity=0.517 Sum_probs=27.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHH-cCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE-ADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~-l~~~~~~v 197 (436)
+..|+|+|+|||||||+++.++.. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 357999999999999999999999 68666544
No 167
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.38 E-value=0.00037 Score=63.87 Aligned_cols=37 Identities=27% Similarity=0.381 Sum_probs=30.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH---cCCceEEEeccchh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDLV 203 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l~ 203 (436)
.-|+|.|+||+||||+++.++.. .|..++.++...+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 56999999999999999999998 68887766655443
No 168
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.35 E-value=0.00012 Score=64.14 Aligned_cols=31 Identities=35% Similarity=0.477 Sum_probs=27.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4699999999999999999999999876654
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.35 E-value=0.00012 Score=67.04 Aligned_cols=32 Identities=28% Similarity=0.516 Sum_probs=28.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
.++|.|||||||||+++.+|..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48899999999999999999999988887764
No 170
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.31 E-value=0.00012 Score=63.62 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=28.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
+..|+|.|+|||||||+++.+++.++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 357999999999999999999999998766543
No 171
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.29 E-value=0.00013 Score=62.16 Aligned_cols=31 Identities=16% Similarity=0.380 Sum_probs=27.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3599999999999999999999999876653
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.28 E-value=0.00018 Score=64.18 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=27.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999766554
No 173
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.28 E-value=0.00012 Score=62.21 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=25.7
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
-|+|.||||+||||+++.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8888887654
No 174
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.28 E-value=0.00014 Score=63.06 Aligned_cols=39 Identities=36% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
.++..++|.||+|+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 344679999999999999999999987766667765443
No 175
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.28 E-value=0.00013 Score=63.33 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=26.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..|+|.|+|||||||+++.+++.++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 569999999999999999999999876654
No 176
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00019 Score=63.07 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+..|+|.|++|+||||+++.++..++..++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 35799999999999999999999998776653
No 177
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.27 E-value=0.00015 Score=62.69 Aligned_cols=30 Identities=37% Similarity=0.571 Sum_probs=26.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..++|.|+|||||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 469999999999999999999999866544
No 178
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.24 E-value=0.00022 Score=63.35 Aligned_cols=39 Identities=23% Similarity=0.399 Sum_probs=30.5
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCCceEEEeccchh
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV 203 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l~ 203 (436)
...++.|+|.||||+||+|.|+.+++.++.+. ++..++.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 34456789999999999999999999998654 4544443
No 179
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.23 E-value=0.00016 Score=64.21 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=26.7
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998777655
No 180
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=97.23 E-value=0.002 Score=46.54 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 042771 9 AIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAV 72 (436)
Q Consensus 9 a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~~ 72 (436)
=.+-++.|.++.-.|||+.|+.||..+++.+.+.+....|+..|.++.+-..+..+..+.++..
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~~E~~~Vk~i 75 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEINVEAKQVKDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999999999999999999999988877777777777665
No 181
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00018 Score=65.25 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=28.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
++..|+|.||||+||||+++.+++.++..++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 446799999999999999999999998766654
No 182
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.22 E-value=0.00016 Score=64.86 Aligned_cols=31 Identities=23% Similarity=0.430 Sum_probs=27.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+||+||||+++.+++.++..++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5699999999999999999999998776654
No 183
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.21 E-value=0.00017 Score=63.96 Aligned_cols=30 Identities=27% Similarity=0.448 Sum_probs=26.7
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 488999999999999999999998777654
No 184
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00016 Score=62.25 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
..|+|.|+||+||||+++.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 56999999999999999999999998876
No 185
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.20 E-value=0.0013 Score=64.57 Aligned_cols=73 Identities=14% Similarity=0.083 Sum_probs=47.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh----------------h----hchHHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK----------------W----MGESEKLVSSLFQMA 221 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~----------------~----~g~~~~~~~~~~~~a 221 (436)
++..++|.||+|+||||++..+|..+ +..+..+++..+... + ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999999765 566666554322110 0 011222334445555
Q ss_pred HhcCCeEEEEcccccc
Q 042771 222 RESAPSIIFIDEIDSL 237 (436)
Q Consensus 222 ~~~~p~il~iDeid~l 237 (436)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557789999988654
No 186
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.20 E-value=0.00017 Score=62.84 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=26.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999998665543
No 187
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.19 E-value=0.0011 Score=57.47 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 188
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.19 E-value=0.00032 Score=59.95 Aligned_cols=31 Identities=32% Similarity=0.589 Sum_probs=26.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
+..++|.||+|+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 4579999999999999999999998765543
No 189
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.19 E-value=0.0002 Score=63.77 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=27.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+||+||||+++.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999776654
No 190
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.19 E-value=0.00019 Score=60.81 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=26.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999877653
No 191
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.18 E-value=0.00022 Score=62.54 Aligned_cols=32 Identities=19% Similarity=0.380 Sum_probs=27.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|+|.|+|||||||+++.+++.++..++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 56999999999999999999999987665543
No 192
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.18 E-value=0.00033 Score=67.25 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=43.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc----CCceEEEe-ccchhh---------hhhchHHHHHHHHHHHHHhcCCeEEEEc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA----DSTFFSIS-SSDLVS---------KWMGESEKLVSSLFQMARESAPSIIFID 232 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~-~~~l~~---------~~~g~~~~~~~~~~~~a~~~~p~il~iD 232 (436)
..++|.||+|+||||++++++..+ +..++.+. ..++.. ...+.....+...+..+-...|.+|++|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~PdvillD 203 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILVG 203 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEecC
Confidence 469999999999999999998875 33444332 111110 0011111123345666777899999999
Q ss_pred ccc
Q 042771 233 EID 235 (436)
Q Consensus 233 eid 235 (436)
|+-
T Consensus 204 Ep~ 206 (356)
T 3jvv_A 204 EMR 206 (356)
T ss_dssp CCC
T ss_pred CCC
Confidence 984
No 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.18 E-value=0.00017 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=22.9
Q ss_pred cceEEecCCcchHHHHHHHHHH-HcCCc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT-EADST 193 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~-~l~~~ 193 (436)
..|+|.|+||+||||+++.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 4689999999999999999998 45543
No 194
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.17 E-value=0.00028 Score=63.52 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=27.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+|||||||+++.+++.++..++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999766554
No 195
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.16 E-value=0.00026 Score=62.50 Aligned_cols=33 Identities=36% Similarity=0.637 Sum_probs=27.2
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEeccch
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDL 202 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~l 202 (436)
.|+|.||||+||+|.|+.+++.++.+.+ +..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHH
Confidence 3789999999999999999999987654 44444
No 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.16 E-value=0.0062 Score=65.65 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=34.5
Q ss_pred cCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 136 AGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 136 ~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+|.+...+.|.+.+... ...+-+.|+||.|+|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999888876421 12357999999999999999999863
No 197
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.14 E-value=0.00023 Score=61.63 Aligned_cols=25 Identities=16% Similarity=0.375 Sum_probs=23.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..|+|.||||+||||+++.++..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999887
No 198
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.00031 Score=61.63 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=26.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
++..+.|.||+|+||||+++.++..+|..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 3457999999999999999999999975444
No 199
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.14 E-value=0.0029 Score=59.67 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=29.3
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
+..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34555679999999999999999998654 456666653
No 200
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.14 E-value=0.0014 Score=57.66 Aligned_cols=24 Identities=25% Similarity=0.517 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999998877653
No 201
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.13 E-value=0.00035 Score=60.45 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=27.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|+|.|+|||||||+++.+++.++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5699999999999999999999998766554
No 202
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=97.13 E-value=0.0025 Score=55.66 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=17.5
Q ss_pred cceEEecCCcchHHHHHH-HHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK-AVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~-aia~~ 189 (436)
+.+++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 579999999999998743 33443
No 203
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.12 E-value=0.001 Score=57.64 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=27.5
Q ss_pred CcceEEecCCcchHH-HHHHHHHHHc--CCceEEEecc
Q 042771 166 WRAFLLYGPPGTGKS-YLAKAVATEA--DSTFFSISSS 200 (436)
Q Consensus 166 ~~~iLl~GppGtGKT-~la~aia~~l--~~~~~~v~~~ 200 (436)
..-.++|||.|+||| .|.+++.+.. +..++.+.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 356889999999999 8889887753 6677777643
No 204
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.12 E-value=0.0005 Score=64.08 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=29.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.-++|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 5688999999999999999999999887776654
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00035 Score=59.94 Aligned_cols=36 Identities=17% Similarity=0.275 Sum_probs=30.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD 201 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~ 201 (436)
+..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 4568999999999999999999987 88888877543
No 206
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.10 E-value=0.0026 Score=59.25 Aligned_cols=36 Identities=14% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEe
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSIS 198 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~ 198 (436)
..+..-++|.||||+|||+|++.++..+ |.+++.++
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3455679999999999999999998764 43555543
No 207
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.10 E-value=0.00027 Score=63.03 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=26.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..|+|.||||+||||+++.+++.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999975544
No 208
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.10 E-value=0.00021 Score=67.91 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=37.9
Q ss_pred cCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 136 AGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 136 ~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
+..+.+.+.+...+...+.. ....+++|+||+|+||||+++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 44566666666655443221 122479999999999999999999999887754
No 209
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.09 E-value=0.0026 Score=63.00 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec
Q 042771 161 GKRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS 199 (436)
Q Consensus 161 ~~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~ 199 (436)
++..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 345566779999999999999999998753 456777654
No 210
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.06 E-value=0.00055 Score=62.79 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=42.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec-cchh---------hhhhchHHHHHHHHHHHHHhcCCeEE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS-SDLV---------SKWMGESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~-~~l~---------~~~~g~~~~~~~~~~~~a~~~~p~il 229 (436)
.+...++|.||+|+||||++++++..+ ...++.... .++. ...++.....++..+..+-...|.+|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 344579999999999999999999865 233332210 0000 00000011123444555555689999
Q ss_pred EEcccc
Q 042771 230 FIDEID 235 (436)
Q Consensus 230 ~iDeid 235 (436)
++||.-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 211
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.05 E-value=0.00038 Score=63.14 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=27.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.+..+.|.||+|+||||+++.+++.+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 34679999999999999999999999875543
No 212
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.02 E-value=0.00041 Score=61.50 Aligned_cols=30 Identities=23% Similarity=0.302 Sum_probs=26.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998777655
No 213
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.02 E-value=0.00053 Score=60.06 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.++..+.|.||+|+||||+++.++..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 344679999999999999999999988 544445554433
No 214
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.01 E-value=0.0022 Score=62.97 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.+.-|+|+|+||+||||+++.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 34668999999999999999999988755443
No 215
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.00 E-value=0.00054 Score=59.37 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=27.5
Q ss_pred ceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
.|.|.|++|+||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88887765
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.99 E-value=0.0005 Score=60.19 Aligned_cols=33 Identities=12% Similarity=0.115 Sum_probs=28.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc-CCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA-DSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l-~~~~~~v~ 198 (436)
+..|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3569999999999999999999998 57777654
No 217
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.99 E-value=0.0059 Score=60.65 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=29.8
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~ 199 (436)
+..++.-++|.|+||+|||+++..+|..+ |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 44555679999999999999999998753 456777653
No 218
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.97 E-value=0.00058 Score=60.90 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=26.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..+.|.||+||||||+++.+++.++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 468999999999999999999999876654
No 219
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.96 E-value=0.00049 Score=61.48 Aligned_cols=30 Identities=23% Similarity=0.458 Sum_probs=25.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.|+|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 388999999999999999999998655443
No 220
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00047 Score=60.25 Aligned_cols=29 Identities=21% Similarity=0.501 Sum_probs=25.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
.|.|.|++|+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986654
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.96 E-value=0.002 Score=72.95 Aligned_cols=100 Identities=19% Similarity=0.260 Sum_probs=67.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHH---cCCceEEEeccch----------------hhhhhchHHHHHHHHHHHHHhcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISSSDL----------------VSKWMGESEKLVSSLFQMARESA 225 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~~~l----------------~~~~~g~~~~~~~~~~~~a~~~~ 225 (436)
..+.+.+|||+|||||+||-.++.+ .|.....+++..- .-..+...+..+..+...++...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~ 1509 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1509 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCC
Confidence 3356999999999999999887654 3666666665421 11223445777888888889999
Q ss_pred CeEEEEccccccccCCCCC-----CCchHHHHHHHHHHHHhhcC
Q 042771 226 PSIIFIDEIDSLCGQRGEG-----NESEASRRIKTELLVQMQGV 264 (436)
Q Consensus 226 p~il~iDeid~l~~~~~~~-----~~~~~~~~~~~~ll~~l~~~ 264 (436)
+++|+||-+..|.+...-. ..-....+++++.+..+.+.
T Consensus 1510 ~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~ 1553 (1706)
T 3cmw_A 1510 VDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGN 1553 (1706)
T ss_dssp CSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 9999999999998875321 11122345555555555433
No 222
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=96.95 E-value=0.016 Score=42.58 Aligned_cols=68 Identities=15% Similarity=0.146 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHH
Q 042771 4 NFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRA 71 (436)
Q Consensus 4 ~~~~~a~~~~~~A~~~d~~g~~~~a~~~y~~a~~~l~~~~~~~~d~~~~~~~~~k~~~y~~rae~lk~ 71 (436)
..+..|...-.+|-++-..|+|++|++++..|+.+|.++++....+.....+.-+-.-++...+-|+.
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqLQrd~HlKQ~~liq~ 77 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLELQRDSHMKQLLLIQE 77 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999998887777766555555555544433
No 223
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.94 E-value=0.0086 Score=52.87 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=34.7
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+|+++.-.+.+.+.|...- ...+..++. .......+++.+|+|+|||..+-..+-.
T Consensus 14 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCSTTSCCCHHHHHHHHHTT---CCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHH
Confidence 46888877777777776632 111111111 0111256999999999999876655544
No 224
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.94 E-value=0.0053 Score=54.36 Aligned_cols=58 Identities=17% Similarity=0.047 Sum_probs=34.3
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHH-HHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLA-KAVATE 189 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la-~aia~~ 189 (436)
..+|+++.-.+.+.+.|...- ...+..++. .....+++++.+|+|+|||..+ -.+...
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHH
Confidence 456888877777777776542 111111111 1112257999999999999873 334443
No 225
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.92 E-value=0.00067 Score=58.91 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.2
Q ss_pred eEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
|.|.|++||||||+++.+++.+ |.+++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 7899999999999999999998 88887654
No 226
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.91 E-value=0.00033 Score=60.61 Aligned_cols=32 Identities=28% Similarity=0.231 Sum_probs=25.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHcC---CceEEEec
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEAD---STFFSISS 199 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~ 199 (436)
.|+|.|+||+||||+++.+++.++ .++..++.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~ 37 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence 589999999999999999999876 23444443
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.91 E-value=0.00043 Score=60.72 Aligned_cols=30 Identities=23% Similarity=0.248 Sum_probs=25.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.|.|.|++||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887666544
No 228
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.87 E-value=0.0007 Score=60.78 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=26.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..+.|.||+|+||||+++.+++.++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 579999999999999999999999876654
No 229
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.87 E-value=0.00073 Score=61.45 Aligned_cols=32 Identities=34% Similarity=0.539 Sum_probs=28.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..+.|.|++|+||||+++.+|..++.+++..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 57999999999999999999999998877643
No 230
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.86 E-value=0.00048 Score=65.11 Aligned_cols=33 Identities=27% Similarity=0.394 Sum_probs=29.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
..|+|.||+|||||+|+..+|+.++..++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 469999999999999999999999988777654
No 231
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.0022 Score=56.61 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=29.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC----CceEEEeccch
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD----STFFSISSSDL 202 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~~~~l 202 (436)
+..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 35789999999999999999998764 55777765443
No 232
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.84 E-value=0.0065 Score=61.17 Aligned_cols=38 Identities=8% Similarity=-0.082 Sum_probs=30.3
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~ 199 (436)
+..+..-++|.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45566779999999999999999998764 456777664
No 233
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.80 E-value=0.00066 Score=59.17 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=27.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|.|+|++||||||+++.++..+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 45889999999999999999999887766543
No 234
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.79 E-value=0.00071 Score=63.15 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=28.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.-++|.||+|+|||+|+..+|+.++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4588999999999999999999998777666543
No 235
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.78 E-value=0.00097 Score=64.45 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=43.3
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC----CceEEEecc-chh--h--hhh-----chHHHHHHHHHHHHHhcCCeEE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD----STFFSISSS-DLV--S--KWM-----GESEKLVSSLFQMARESAPSII 229 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~~~-~l~--~--~~~-----g~~~~~~~~~~~~a~~~~p~il 229 (436)
.+...++|.||+|+||||++++++..+. ..++.+... ++. . .++ +.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 4446799999999999999999998652 334333211 100 0 000 0011122344555555689999
Q ss_pred EEcccc
Q 042771 230 FIDEID 235 (436)
Q Consensus 230 ~iDeid 235 (436)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999984
No 236
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.76 E-value=0.00094 Score=58.53 Aligned_cols=31 Identities=29% Similarity=0.467 Sum_probs=27.6
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
.|.|.|++|+||||+++.++..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998777644
No 237
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.00039 Score=61.28 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
+..|+|.|++||||||+++.+++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4579999999999999999999987543
No 238
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.75 E-value=0.00078 Score=59.14 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=25.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.+.|.||+|+||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 588999999999999999988 88776643
No 239
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.75 E-value=0.0012 Score=60.12 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=27.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
+...+.|.||+|+||||+++.+++.+|..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34579999999999999999999999976553
No 240
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.73 E-value=0.00084 Score=58.99 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=24.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
.-|+|.|+||+||||+++.+++.++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 568999999999999999999998763
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.73 E-value=0.0052 Score=60.12 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=54.8
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHcC---CceEEEec-cchhh
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISS-SDLVS 204 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~-~~l~~ 204 (436)
..+++++.-....+..|..++. .+...++|.||+|+||||++++++..+. ..++.+.- .++..
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~ 209 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDI 209 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhcc
Confidence 5677887665555556665431 2234689999999999999999999874 23443321 11100
Q ss_pred h------hhchHHHHHHHHHHHHHhcCCeEEEEcccc
Q 042771 205 K------WMGESEKLVSSLFQMARESAPSIIFIDEID 235 (436)
Q Consensus 205 ~------~~g~~~~~~~~~~~~a~~~~p~il~iDeid 235 (436)
. ............+..+....|.++++.|+.
T Consensus 210 ~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiR 246 (418)
T 1p9r_A 210 DGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR 246 (418)
T ss_dssp SSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred CCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcC
Confidence 0 000001112333444455678999999864
No 242
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.73 E-value=0.0093 Score=58.93 Aligned_cols=38 Identities=21% Similarity=0.142 Sum_probs=30.1
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
+..++.-++|.|+||+|||+++..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 44555679999999999999999998764 567777654
No 243
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.71 E-value=0.00097 Score=58.55 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=25.3
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34556799999999999999999999885
No 244
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.68 E-value=0.0068 Score=52.83 Aligned_cols=18 Identities=39% Similarity=0.316 Sum_probs=15.5
Q ss_pred cceEEecCCcchHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ 184 (436)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 579999999999997554
No 245
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.66 E-value=0.0024 Score=65.91 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988876554
No 246
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.66 E-value=0.00049 Score=60.71 Aligned_cols=26 Identities=19% Similarity=0.147 Sum_probs=23.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+..|+|.|++||||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999864
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.66 E-value=0.0077 Score=56.13 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=28.2
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc----CCceEEEecc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSS 200 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~ 200 (436)
++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 45689999999999999999998764 4466666543
No 248
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.66 E-value=0.0016 Score=59.23 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=30.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCc--------eEEEeccchh
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADST--------FFSISSSDLV 203 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~--------~~~v~~~~l~ 203 (436)
..|.|.|++||||||+++.++..++.+ +..++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 569999999999999999999999876 3356666654
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.64 E-value=0.0013 Score=57.41 Aligned_cols=31 Identities=19% Similarity=0.167 Sum_probs=26.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+..|.|.|++||||||+++.+++. |.+++..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 357999999999999999999998 7666543
No 250
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.63 E-value=0.0012 Score=56.82 Aligned_cols=25 Identities=20% Similarity=0.499 Sum_probs=22.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998764
No 251
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.61 E-value=0.0017 Score=55.90 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.1
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC---CceEEEecc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSS 200 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~ 200 (436)
++..++|.|++|+||||+++.++..++ ..+..++..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 446799999999999999999998873 445555543
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.60 E-value=0.0015 Score=56.50 Aligned_cols=28 Identities=43% Similarity=0.689 Sum_probs=23.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCce
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTF 194 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~ 194 (436)
+.|+|.||+|+|||||++.+.......|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4599999999999999999998875443
No 253
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=96.58 E-value=0.012 Score=52.01 Aligned_cols=53 Identities=11% Similarity=-0.005 Sum_probs=30.0
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKA 185 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~a 185 (436)
.+|+++.-.+.+.+.|...- ...+..++. .....+.+++.+|+|+|||..+-.
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~ 60 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLR---FYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLL 60 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHH
T ss_pred CCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHH
Confidence 45777766666666665521 111111111 001125799999999999986443
No 254
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=96.58 E-value=0.01 Score=53.08 Aligned_cols=53 Identities=17% Similarity=0.122 Sum_probs=32.1
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ 184 (436)
..+|+++.-.+.+.+.|...- ...+..++. .....+.+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 456888877777777776532 111111111 11122579999999999998643
No 255
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.57 E-value=0.022 Score=57.40 Aligned_cols=36 Identities=17% Similarity=0.348 Sum_probs=28.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
.-|+|+|.||+||||+++.+++.+ +.....++..++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 568999999999999999999988 444555555443
No 256
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.57 E-value=0.0017 Score=57.60 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=25.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..|.|.|++|+||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 5689999999999999999998 88766554
No 257
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=96.56 E-value=0.0079 Score=53.92 Aligned_cols=55 Identities=15% Similarity=0.031 Sum_probs=32.8
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHH
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKA 185 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~a 185 (436)
+..+|+++.-.+.+.+.|...- ...+..++. .....+.+++.+|+|+|||..+-.
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYG---FEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHH
Confidence 3457888876777777775532 111111111 111225799999999999977443
No 258
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.56 E-value=0.0048 Score=65.47 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=38.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCCh-hhhcCCCCCCcceEEecCCcchHHHHHHHHHHH
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFP-QFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~-~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+..+|+++.-.....+.+...-..|.... ..+.........+++.||+|+|||+++..++..
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44578888777777777766544442211 111111112246999999999999987777544
No 259
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.56 E-value=0.0086 Score=56.62 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999999875
No 260
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.54 E-value=0.0013 Score=62.39 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=27.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
..|+|.||+|+|||+|+..+|..++..++..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 46899999999999999999999986666544
No 261
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.54 E-value=0.0019 Score=58.16 Aligned_cols=34 Identities=26% Similarity=0.374 Sum_probs=28.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..+..+.|.|++|+||||+++.++..+|.+++..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 3445799999999999999999999999776543
No 262
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.52 E-value=0.0017 Score=56.05 Aligned_cols=25 Identities=36% Similarity=0.687 Sum_probs=22.0
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCC
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
.++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 5789999999999999999986654
No 263
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.50 E-value=0.0018 Score=57.09 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
++.-+.|.||+|+||||+++.++..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3456899999999999999999998753
No 264
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.49 E-value=0.0012 Score=58.02 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc-CCceEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA-DSTFFS 196 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l-~~~~~~ 196 (436)
++.-+.|.|++|+||||+++.++..+ +..++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 34568899999999999999999987 544443
No 265
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=96.48 E-value=0.013 Score=52.31 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=30.0
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLA 183 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la 183 (436)
..+|+++.-.+.+.+.|...- ...+..++. .....+++++.+|+|+|||...
T Consensus 23 ~~~f~~l~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 23 PADFESLLLSRPVLEGLRAAG---FERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp -CCGGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHH
Confidence 356777766666666665521 111111111 0112357999999999999874
No 266
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.48 E-value=0.002 Score=57.00 Aligned_cols=31 Identities=35% Similarity=0.486 Sum_probs=27.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
..+.|.|++|||||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4699999999999999999999999776554
No 267
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=96.45 E-value=0.012 Score=52.17 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.5
Q ss_pred cceEEecCCcchHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ 184 (436)
+.+++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998644
No 268
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.41 E-value=0.0079 Score=52.17 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=25.5
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
..-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3568899999999999998888765 55555553
No 269
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.41 E-value=0.014 Score=60.79 Aligned_cols=50 Identities=26% Similarity=0.332 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccc
Q 042771 138 LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSD 201 (436)
Q Consensus 138 ~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~ 201 (436)
.+.+++++..++... .-.||+||||||||+++-.+...+ +..++.+..++
T Consensus 191 N~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN 243 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSN 243 (646)
T ss_dssp CHHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CHHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCch
Confidence 567777777665321 247899999999998766554443 55666665543
No 270
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.38 E-value=0.015 Score=58.89 Aligned_cols=77 Identities=18% Similarity=0.199 Sum_probs=48.5
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhhh--------------------------hh--chH
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVSK--------------------------WM--GES 210 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~~--------------------------~~--g~~ 210 (436)
+..+...++|.||+|+|||+|++.++... |..++++...+-... .. -..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~ 356 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 356 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCH
Confidence 34455679999999999999999998764 344445433211000 00 012
Q ss_pred HHHHHHHHHHHHhcCCeEEEEccccccc
Q 042771 211 EKLVSSLFQMARESAPSIIFIDEIDSLC 238 (436)
Q Consensus 211 ~~~~~~~~~~a~~~~p~il~iDeid~l~ 238 (436)
....+.+...+....|.+|+||=+..|.
T Consensus 357 g~~q~~~~a~~l~~~p~llilDp~~~Ld 384 (525)
T 1tf7_A 357 EDHLQIIKSEINDFKPARIAIDSLSALA 384 (525)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHT
T ss_pred HHHHHHHHHHHHhhCCCEEEEcChHHHH
Confidence 3344555666667789999999655553
No 271
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=96.37 E-value=0.0097 Score=53.51 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.6
Q ss_pred cceEEecCCcchHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ 184 (436)
+.+++.+|+|+|||...-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 579999999999998754
No 272
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.37 E-value=0.0027 Score=58.82 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=25.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
+..|.|.|++||||||+++.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3569999999999999999999 678765543
No 273
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.37 E-value=0.017 Score=51.66 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.8
Q ss_pred cceEEecCCcchHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia 187 (436)
..+++.||+|||||+++..+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998776654
No 274
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.37 E-value=0.015 Score=62.38 Aligned_cols=24 Identities=38% Similarity=0.441 Sum_probs=20.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~ 188 (436)
+...++|.||.|+||||+.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 345699999999999999999874
No 275
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.37 E-value=0.002 Score=61.18 Aligned_cols=70 Identities=17% Similarity=0.288 Sum_probs=43.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC--ceEEEecc-chh-----hh--hhchHHHHHHHHHHHHHhcCCeEEEEccccc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS--TFFSISSS-DLV-----SK--WMGESEKLVSSLFQMARESAPSIIFIDEIDS 236 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~--~~~~v~~~-~l~-----~~--~~g~~~~~~~~~~~~a~~~~p~il~iDeid~ 236 (436)
..++|.||+|+|||||+++++..... ..+.+... ++. .. ++.......+..+..+....|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 57999999999999999999988632 23444322 110 00 1100112234445556667899999999763
No 276
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.36 E-value=0.0018 Score=56.70 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=22.7
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+..+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568999999999999999999876
No 277
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.35 E-value=0.018 Score=54.70 Aligned_cols=68 Identities=10% Similarity=0.026 Sum_probs=38.7
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcC-----CCCCCcceEEecCCcchHHHHHHHHHHHc-----CCceEEEe
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTG-----KRQPWRAFLLYGPPGTGKSYLAKAVATEA-----DSTFFSIS 198 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~-----~~~~~~~iLl~GppGtGKT~la~aia~~l-----~~~~~~v~ 198 (436)
..+|+++.-.+.+.+.|...-.. .+..++. ......++++.+|+|+|||..+-..+-.. +..++.+.
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~---~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~ 81 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFE---KPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILT 81 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEEC
T ss_pred cCchhhcCCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEc
Confidence 34677776667777776653211 1111110 01112579999999999999876555443 34455544
Q ss_pred c
Q 042771 199 S 199 (436)
Q Consensus 199 ~ 199 (436)
+
T Consensus 82 P 82 (367)
T 1hv8_A 82 P 82 (367)
T ss_dssp S
T ss_pred C
Confidence 3
No 278
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.34 E-value=0.0015 Score=56.71 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=26.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
...++|.||+|+|||+||..+++..+ .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 36799999999999999999998866 555444
No 279
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.32 E-value=0.002 Score=62.32 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.-|+|.||+|+|||+|+..+|..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 4688999999999999999999998776654
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.31 E-value=0.002 Score=56.35 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=22.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+..+.|.||+|+|||||++.++....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45799999999999999999998763
No 281
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.31 E-value=0.0083 Score=52.73 Aligned_cols=32 Identities=13% Similarity=-0.004 Sum_probs=24.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
.-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 446689999999999998887654 66666665
No 282
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.29 E-value=0.013 Score=55.10 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=28.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
.++..++|.||+|+||||++..+|..+ +..+..+++
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 455789999999999999999999865 555655543
No 283
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.29 E-value=0.0079 Score=61.68 Aligned_cols=37 Identities=16% Similarity=0.293 Sum_probs=32.0
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccch
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDL 202 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l 202 (436)
+..|+|.|+||+||||+++++++.+ |.+++.++...+
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 3569999999999999999999998 899988875443
No 284
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.28 E-value=0.0021 Score=59.92 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=24.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHc-CCceE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA-DSTFF 195 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l-~~~~~ 195 (436)
.-|+|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 54444
No 285
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.28 E-value=0.0024 Score=55.73 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=22.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+.-+.|.||+|+|||||++.++..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998864
No 286
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.26 E-value=0.013 Score=58.63 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=27.8
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
++..|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45689999999999999999999765 566666665
No 287
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.25 E-value=0.02 Score=57.86 Aligned_cols=111 Identities=18% Similarity=0.216 Sum_probs=59.7
Q ss_pred CCCcceEEecCCcchHHHHHHHH--HHHc--CCceEEEeccchhhh---------hh-----------------------
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAV--ATEA--DSTFFSISSSDLVSK---------WM----------------------- 207 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~ai--a~~l--~~~~~~v~~~~l~~~---------~~----------------------- 207 (436)
.+...++|.||+|+|||||++.+ +... +...++++..+.... |.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~l~~~~~~~~~~~~~ 116 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEGQE 116 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSCCS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCcEEEEecCcccchhh
Confidence 34467999999999999999994 4332 333444443221000 00
Q ss_pred --c--hHHHHHHHHHHHHHhcCCeEEEEccccccccCCCCCCCchHHHHHHHHHHHHhhcCCCCCCceEEEeccCCCCc
Q 042771 208 --G--ESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYA 282 (436)
Q Consensus 208 --g--~~~~~~~~~~~~a~~~~p~il~iDeid~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~~ 282 (436)
. ........+........|.+|+|||+-.+.+.. ......+..+..++..+.. ..+.||.++.....
T Consensus 117 ~l~~~~l~~~~~~~~~~LS~g~~~~lilDe~t~~~~~~---~lD~~~~~~l~~ll~~l~~-----~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 117 VVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQY---DASSVVRRELFRLVARLKQ-----IGATTVMTTERIEE 187 (525)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTT---CCHHHHHHHHHHHHHHHHH-----HTCEEEEEEECSSS
T ss_pred hhcccCHHHHHHHHHHHHHHcCCCEEEECCHHHHHHhc---CCHHHHHHHHHHHHHHHHH-----CCCEEEEEecCCCC
Confidence 0 012233444555556678899999997764321 0122333344445554431 12455556655544
No 288
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.23 E-value=0.0047 Score=53.97 Aligned_cols=36 Identities=14% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
++.-+.|.||+|+||||+++.++..+ +.+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34579999999999999999999875 5666655443
No 289
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.21 E-value=0.0026 Score=54.85 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..+.|.||+|+|||||++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998764
No 290
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0025 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.241 Sum_probs=23.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+..+.|.||+|+|||||++.++..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35688999999999999999999887
No 291
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.19 E-value=0.0031 Score=55.24 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=27.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..|.|.|++|||||++++.+|+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 368999999999999999999999999885
No 292
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.0039 Score=54.33 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=23.1
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+.-+.|.||+|+|||||++.++....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998865
No 293
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.16 E-value=0.11 Score=51.49 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=23.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..++|.||+|+|||||++.++..+
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 345679999999999999999999875
No 294
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.13 E-value=0.017 Score=56.73 Aligned_cols=35 Identities=26% Similarity=0.233 Sum_probs=28.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEecc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSS 200 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~ 200 (436)
+..++|+|++|+||||++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4679999999999999999999876 4556666543
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.10 E-value=0.015 Score=57.14 Aligned_cols=72 Identities=15% Similarity=0.218 Sum_probs=47.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc----CCceEEEeccchhhhhh--------------------chHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSSDLVSKWM--------------------GESEKLVSSLFQ 219 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~~l~~~~~--------------------g~~~~~~~~~~~ 219 (436)
.+++.++++|++|+||||++..+|..+ |..+..+++........ ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345789999999999999999998765 66777776653221100 012333355566
Q ss_pred HHHhcCCeEEEEcccc
Q 042771 220 MARESAPSIIFIDEID 235 (436)
Q Consensus 220 ~a~~~~p~il~iDeid 235 (436)
.+......+++||=.-
T Consensus 178 ~~~~~~~D~VIIDTpG 193 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAG 193 (433)
T ss_dssp HHHHTTCSEEEEECCC
T ss_pred HHHhCCCCEEEEECCC
Confidence 6654455799998654
No 296
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.10 E-value=0.0028 Score=55.76 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=24.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3446788999999999999999999875
No 297
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=96.10 E-value=0.011 Score=58.40 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 468999999999999999887654
No 298
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=96.07 E-value=0.033 Score=50.25 Aligned_cols=52 Identities=13% Similarity=0.043 Sum_probs=31.1
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ 184 (436)
.+|+++.-.+.+.+.|...-. ..+..++. .....+.+++.+|+|+|||..+-
T Consensus 43 ~~f~~l~l~~~l~~~l~~~g~---~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 43 KTFKDLGVTDVLCEACDQLGW---TKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCTGGGTCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhH
Confidence 467777666777776665321 11111111 01122679999999999998644
No 299
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.07 E-value=0.0054 Score=57.36 Aligned_cols=27 Identities=19% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..+.|.||+|+||||+++.+|..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999875
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.06 E-value=0.012 Score=55.69 Aligned_cols=37 Identities=19% Similarity=0.142 Sum_probs=28.9
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
..+..-++|.|+||+|||+++..+|..+ +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3455679999999999999999998764 566666653
No 301
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.01 E-value=0.013 Score=54.65 Aligned_cols=71 Identities=15% Similarity=0.061 Sum_probs=45.5
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh-------hh------------h-chHHHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS-------KW------------M-GESEKLVSSLFQMAR 222 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~-------~~------------~-g~~~~~~~~~~~~a~ 222 (436)
+..+++.|++|+||||++..+|..+ +..+..+++..... .+ . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999776 56666665432111 00 0 112333445566665
Q ss_pred hcCCeEEEEccccc
Q 042771 223 ESAPSIIFIDEIDS 236 (436)
Q Consensus 223 ~~~p~il~iDeid~ 236 (436)
.....+|+||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45567999997544
No 302
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.00 E-value=0.075 Score=50.95 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=32.2
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia~ 188 (436)
.+|+++.-...+.+.|...- ...+..++. ......++++.+|+|+|||..+-..+-
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~ 67 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCG---FEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHS---CCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHH
T ss_pred CChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHH
Confidence 35777766666666666532 111111111 111236799999999999987654443
No 303
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.96 E-value=0.002 Score=56.65 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcC
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~ 191 (436)
-|.|.|++|+||||+++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999875
No 304
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.94 E-value=0.015 Score=51.19 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~ 198 (436)
-.|-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4689999999999999999988 898877654
No 305
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.94 E-value=0.02 Score=53.28 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh-------hh--------h-----chHHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS-------KW--------M-----GESEKLVSSLFQMA 221 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~-------~~--------~-----g~~~~~~~~~~~~a 221 (436)
++..+.|.|++|+||||++..+|..+ +..+..+++.-... .+ . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999765 45555554321100 00 0 01223334555555
Q ss_pred HhcCCeEEEEccccc
Q 042771 222 RESAPSIIFIDEIDS 236 (436)
Q Consensus 222 ~~~~p~il~iDeid~ 236 (436)
....+.+|+||+--.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 545678999998744
No 306
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.94 E-value=0.0037 Score=62.93 Aligned_cols=69 Identities=23% Similarity=0.368 Sum_probs=42.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC--CceEEEeccc-hhhh---h--------hchHHHHHHHHHHHHHhcCCeEEEEc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD--STFFSISSSD-LVSK---W--------MGESEKLVSSLFQMARESAPSIIFID 232 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~--~~~~~v~~~~-l~~~---~--------~g~~~~~~~~~~~~a~~~~p~il~iD 232 (436)
.+++|.||+|+||||++++++..+. ...+.+.... +... + .+.....+..+...+....|.++++.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 5699999999999999999998874 2344443221 1100 0 00001123334445556789999999
Q ss_pred ccc
Q 042771 233 EID 235 (436)
Q Consensus 233 eid 235 (436)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 974
No 307
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.93 E-value=0.005 Score=54.93 Aligned_cols=30 Identities=27% Similarity=0.417 Sum_probs=26.4
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.+-|.||||+||||+++.+++.++.+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 578899999999999999999998776644
No 308
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.93 E-value=0.033 Score=59.96 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.4
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
..++|.||.|+||||+.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999953
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.92 E-value=0.0054 Score=51.46 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 344568999999999999999999987
No 310
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=95.88 E-value=0.025 Score=59.42 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=40.6
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCC--hhhhcCCCCCCcceEEecCCcchHHHHHHHHH-HH---cCCceEEEe
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKF--PQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVA-TE---ADSTFFSIS 198 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~--~~~~~~~~~~~~~iLl~GppGtGKT~la~aia-~~---l~~~~~~v~ 198 (436)
.+.+|+++.-.+.+++.+...-...+.. .+.+........++++.||+|+|||+.+-..+ +. -+..++.+.
T Consensus 6 ~~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~ 82 (715)
T 2va8_A 6 EWMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVT 82 (715)
T ss_dssp CCCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEEC
T ss_pred ccCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567888876667776665421101110 12222223345789999999999999985443 22 244555554
No 311
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.88 E-value=0.0072 Score=57.84 Aligned_cols=28 Identities=18% Similarity=0.178 Sum_probs=24.3
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
..++..+.|.||+|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3455679999999999999999999875
No 312
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.87 E-value=0.0046 Score=52.95 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=27.9
Q ss_pred eEEecCCcchHHHHHHHHHHHcCCceEEEeccc
Q 042771 169 FLLYGPPGTGKSYLAKAVATEADSTFFSISSSD 201 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~~~~~~v~~~~ 201 (436)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 87888877643
No 313
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.86 E-value=0.0058 Score=54.69 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=26.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC--CceEE
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD--STFFS 196 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~--~~~~~ 196 (436)
.+.-|.|.||+|+||||+++.+++.++ ..++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 446789999999999999999999986 35443
No 314
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.86 E-value=0.038 Score=53.35 Aligned_cols=56 Identities=18% Similarity=0.056 Sum_probs=32.4
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia 187 (436)
..+|+++.-.+.+.+.|...- ...+..++. .....+++++.+|+|+|||..+-..+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFEAG---FEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHH
T ss_pred cCChhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHH
Confidence 456888876777777776522 111111110 00112569999999999998665443
No 315
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.86 E-value=0.0048 Score=54.81 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=24.1
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..++.-+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 44556799999999999999999998865
No 316
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.86 E-value=0.0049 Score=54.67 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=23.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..+.|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 344578999999999999999999977
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=95.83 E-value=0.013 Score=56.23 Aligned_cols=27 Identities=33% Similarity=0.450 Sum_probs=23.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...++|.||+|+|||||+++++....
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345799999999999999999998764
No 318
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.80 E-value=0.0054 Score=53.84 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||+|+|||||++.++..+.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999874
No 319
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.75 E-value=0.029 Score=54.41 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=31.9
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAV 186 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ai 186 (436)
.+|+++.-...+.+.|...- ...+..++. .....+.+++.+|+|+|||..+-..
T Consensus 40 ~~f~~~~l~~~~~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 40 DSFDDMNLSESLLRGIYAYG---FEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCGGGGCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHH
Confidence 46777776777777766531 111111111 0112356999999999999875433
No 320
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=95.74 E-value=0.12 Score=48.06 Aligned_cols=52 Identities=13% Similarity=0.083 Sum_probs=32.5
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhc-----C-CCCCCcceEEecCCcchHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFT-----G-KRQPWRAFLLYGPPGTGKSYLA 183 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~-----~-~~~~~~~iLl~GppGtGKT~la 183 (436)
..+|+++.-...+.+.|...- +..+..++ . ...+++.+++.+|+|+|||...
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred cCCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 357888877777777776521 22221111 1 1123478999999999999764
No 321
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=95.72 E-value=0.056 Score=51.78 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=30.9
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhc-----C-CCCCCcceEEecCCcchHHHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFT-----G-KRQPWRAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~-----~-~~~~~~~iLl~GppGtGKT~la~aia 187 (436)
.+|+++.-...+.+.|...- ...+..++ . ....+.++++.+|+|+|||..+-..+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMK---FQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHH
T ss_pred cCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHH
Confidence 35666655566666665421 11111111 0 01123689999999999998765443
No 322
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.71 E-value=0.055 Score=52.90 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=44.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc---CCceEEEeccchhh-------hh---------h----chHHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISSSDLVS-------KW---------M----GESEKLVSSLFQMA 221 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~~~l~~-------~~---------~----g~~~~~~~~~~~~a 221 (436)
++..++|.|++|+||||++..+|..+ +..+..+++..... .+ . ..........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 45555555422110 00 0 01123335556666
Q ss_pred HhcCCeEEEEcccc
Q 042771 222 RESAPSIIFIDEID 235 (436)
Q Consensus 222 ~~~~p~il~iDeid 235 (436)
+.....+++||=.-
T Consensus 177 ~~~~~DvVIIDTaG 190 (425)
T 2ffh_A 177 RLEARDLILVDTAG 190 (425)
T ss_dssp HHTTCSEEEEECCC
T ss_pred HHCCCCEEEEcCCC
Confidence 54555799998543
No 323
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.70 E-value=0.0048 Score=52.44 Aligned_cols=21 Identities=38% Similarity=0.539 Sum_probs=18.4
Q ss_pred CcceEEecCCcchHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAV 186 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~ai 186 (436)
+.-+.|.||+|+|||||++.+
T Consensus 9 gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHH
Confidence 356899999999999999964
No 324
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=95.69 E-value=0.04 Score=51.62 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=25.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~ 199 (436)
+++++.+|+|+|||..+-..+-..+...+.+.+
T Consensus 32 ~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P 64 (337)
T 2z0m_A 32 KNVVVRAKTGSGKTAAYAIPILELGMKSLVVTP 64 (337)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTCCEEEECS
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeC
Confidence 579999999999999877776666666665544
No 325
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.65 E-value=0.007 Score=56.54 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=26.7
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcCCce
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEADSTF 194 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~~~~ 194 (436)
..+...+.|+||+|+|||||++.++..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 35556899999999999999999999874444
No 326
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.65 E-value=0.0068 Score=53.98 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=27.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCceEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTFFS 196 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~~~ 196 (436)
..|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468999999999999999999999998865
No 327
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.63 E-value=0.085 Score=55.90 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=21.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+...++|.||.|+||||+.+.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 3356899999999999999999864
No 328
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.62 E-value=0.25 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.1
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...|+|.|.||+|||+|+.++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999999754
No 329
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.56 E-value=0.018 Score=57.16 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=28.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
.++|.+|+|+|||..+-.++..++..++.+-+.
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 599999999999999998888888777776654
No 330
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.56 E-value=0.035 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l 190 (436)
...+.|.|+||+||||++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998875
No 331
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.55 E-value=0.047 Score=48.89 Aligned_cols=18 Identities=33% Similarity=0.589 Sum_probs=15.4
Q ss_pred cceEEecCCcchHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ 184 (436)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 332
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.53 E-value=0.008 Score=54.27 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=24.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
++.-+-|.||+|+|||||++.++..+|..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 33568899999999999999999988743
No 333
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.50 E-value=0.0047 Score=57.47 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=25.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC---CceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l 202 (436)
.-|.|.||+|+||||+++.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999775 44555665544
No 334
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=95.50 E-value=0.048 Score=57.35 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=35.5
Q ss_pred ccccccCcHHHHHHHHHHHhccCCC--hhhhcCCCCCCcceEEecCCcchHHHHHH-HHHHH---cCCceEEEe
Q 042771 131 KWNDVAGLESAKQALQEAVILPVKF--PQFFTGKRQPWRAFLLYGPPGTGKSYLAK-AVATE---ADSTFFSIS 198 (436)
Q Consensus 131 ~~~dl~G~~~~k~~L~~~~~~~~~~--~~~~~~~~~~~~~iLl~GppGtGKT~la~-aia~~---l~~~~~~v~ 198 (436)
+|+++.-.+.+++.+...-...+.. .+.+........++++.||+|+|||+.+. .+.+. -+..++.+.
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 4666655556666555421101110 01111112234789999999999999874 33322 245555554
No 335
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.50 E-value=0.0016 Score=64.04 Aligned_cols=60 Identities=20% Similarity=0.138 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhhcCCCCCCceEEEec-cCCCCcccHHHHh--hccceEEcCCCCHH-HHHHHH
Q 042771 247 SEASRRIKTELLVQMQGVGHNDQKVLVLAA-TNTPYALDQAIRR--RFDKRIYIPLPDLK-ARQHMF 309 (436)
Q Consensus 247 ~~~~~~~~~~ll~~l~~~~~~~~~v~vi~t-tn~~~~l~~~l~~--Rf~~~i~~~~p~~~-~r~~il 309 (436)
....+++++.|+..|+++... ..+ +++ ||.++.++++|++ ||++.|+++.|+.. .+.+|+
T Consensus 125 ~~~e~rvl~~LL~~~dg~~~~-~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 125 DVAEERILDALLPPAKNQWGE-VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHhhccccc-ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 344567788889999987433 222 454 9999999999998 99999999999987 666664
No 336
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.42 E-value=0.15 Score=51.29 Aligned_cols=34 Identities=12% Similarity=0.396 Sum_probs=24.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--------CCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--------DSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--------~~~~~~v~~~ 200 (436)
.++++.+|+|+|||..+-..+... +..++.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 579999999999998877665443 5555555443
No 337
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.41 E-value=0.11 Score=52.39 Aligned_cols=34 Identities=15% Similarity=0.456 Sum_probs=24.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--------CCceEEEecc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--------DSTFFSISSS 200 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--------~~~~~~v~~~ 200 (436)
.++++.+|+|+|||..+-..+... +..++.+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 469999999999998876665443 4555555443
No 338
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.39 E-value=0.047 Score=52.98 Aligned_cols=53 Identities=15% Similarity=0.070 Sum_probs=31.1
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHH
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLA 183 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la 183 (436)
+..+|+++.-.+.+.+.|...- ...+..++. .....+.+++.+|+|+|||..+
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTR---YTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHH
T ss_pred ccCCHhhCCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHH
Confidence 3456888766667777665422 111111111 1112367999999999999743
No 339
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.36 E-value=0.071 Score=47.29 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=22.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
..-.+++||.|+|||+.+-..+... +..++.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3457889999999997766665443 55555554
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.32 E-value=0.019 Score=53.94 Aligned_cols=28 Identities=14% Similarity=0.076 Sum_probs=24.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..+.-+.|.||+||||||+++.++..++
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3345789999999999999999998875
No 341
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.31 E-value=0.039 Score=54.87 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=22.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..|+|.|.||+||||+++.+++.++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5799999999999999999999874
No 342
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.31 E-value=0.072 Score=51.09 Aligned_cols=54 Identities=17% Similarity=0.042 Sum_probs=32.2
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHH
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~ 184 (436)
+..+|+++.-.+.+.+.|...- ...+..++. .......+++.+|+|+|||..+-
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYG---FEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHH
T ss_pred ccCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHH
Confidence 4457888876777777776532 111111111 00112569999999999998743
No 343
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.28 E-value=0.015 Score=56.92 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+-.++.|+||||||+++..++..
T Consensus 161 ~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 161 AKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp SEEEEEEECTTSCHHHHHHHHCCT
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcc
Confidence 356789999999999999888753
No 344
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.28 E-value=0.042 Score=50.00 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=15.9
Q ss_pred cceEEecCCcchHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKA 185 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~a 185 (436)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 5699999999999986543
No 345
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.27 E-value=0.0064 Score=54.33 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=16.5
Q ss_pred CCcceEEecCCcchHHHHHHHHH-HHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVA-TEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia-~~l~ 191 (436)
++.-+.|.||+|+|||||++.++ ..+.
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 34568899999999999999999 7653
No 346
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=95.26 E-value=0.023 Score=59.72 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=22.8
Q ss_pred CcceEEecCCcchHHHHHHHHH-HHc--CCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVA-TEA--DSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia-~~l--~~~~~~v~ 198 (436)
..++++.||+|+|||+.+.... +.+ +..++.+.
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~ 75 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV 75 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3689999999999999885433 222 44555544
No 347
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.26 E-value=0.098 Score=51.97 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC------CCCCCcceEEecCCcchHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG------KRQPWRAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~------~~~~~~~iLl~GppGtGKT~la~ 184 (436)
.+|.++.-.+.+.+.|...- ...+..++. ....+..+|+.||+|+|||..+-
T Consensus 92 ~~f~~~~l~~~l~~~l~~~g---~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~ 149 (479)
T 3fmp_B 92 KSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 149 (479)
T ss_dssp CCSGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHH
T ss_pred CCHHHcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHH
Confidence 46777766777776665421 111111111 11234789999999999998743
No 348
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.26 E-value=0.0097 Score=50.30 Aligned_cols=24 Identities=29% Similarity=0.315 Sum_probs=21.9
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++||.|++|+|||++|.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 478999999999999999999874
No 349
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.24 E-value=0.011 Score=50.38 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.-+.|.|++|+|||||++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568999999999999999998874
No 350
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.23 E-value=0.012 Score=55.04 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34678999999999999999999875
No 351
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.23 E-value=0.019 Score=53.76 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+.-+.|.||+|+|||||++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 335688999999999999999999765
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.22 E-value=0.012 Score=54.72 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=23.8
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+.-+.|.||+|+|||||++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 446789999999999999999998875
No 353
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.20 E-value=0.011 Score=50.01 Aligned_cols=32 Identities=16% Similarity=0.172 Sum_probs=25.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEe
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~ 198 (436)
..+.|.|++|+|||||+..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468999999999999999999875 44444443
No 354
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=95.19 E-value=0.04 Score=60.69 Aligned_cols=33 Identities=15% Similarity=0.242 Sum_probs=23.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
..+|++||+|+|||..+...+... +..++.+.+
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 579999999999999876554443 555555543
No 355
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.18 E-value=0.012 Score=55.29 Aligned_cols=28 Identities=18% Similarity=0.036 Sum_probs=24.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.++.-+.|.||+|+|||||++.++..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 4456788999999999999999998763
No 356
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.16 E-value=0.1 Score=51.24 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=25.8
Q ss_pred ceEEecCCcchHHHHHHHHHHHc----CCceEEEecc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA----DSTFFSISSS 200 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l----~~~~~~v~~~ 200 (436)
++++.+|+|+|||..+-.++... +..++.+-+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999998886654 5566666543
No 357
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.15 E-value=0.046 Score=51.87 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||||+|||||++.++..+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 44578999999999999999999764
No 358
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.13 E-value=0.012 Score=59.93 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=30.7
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcC----CceEEEeccch
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEAD----STFFSISSSDL 202 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~~~~l 202 (436)
+..|+|.|++|+||||+++++++.++ .+++.++...+
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 35689999999999999999999986 67777775443
No 359
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.022 Score=48.78 Aligned_cols=47 Identities=17% Similarity=0.255 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhccCCChhhhcCCCCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 138 LESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 138 ~~~~k~~L~~~~~~~~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
...+++.+.+.+.... .........++|.|++|+|||+|+..+....
T Consensus 26 ~~~l~~~l~~~~~~~~------~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 26 ISQWREWIDEKLGGGS------GGGGSYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CHHHHHHHHHHC--------------CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHhhc------CCCCCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4555666655442211 1112334679999999999999999998753
No 360
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=95.04 E-value=0.12 Score=50.65 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=32.9
Q ss_pred CCCccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHH
Q 042771 128 PNVKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLA 183 (436)
Q Consensus 128 ~~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la 183 (436)
|..+|+++.-.+.+.+.|...- ...|...+. .....+.+++.+|+|+|||...
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g---~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSG---YKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CcCChhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHH
Confidence 4567888876777777776521 222222221 1112367999999999999843
No 361
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.016 Score=52.11 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=23.0
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.-|.|.|++|+||||+++.+++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999984
No 362
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=95.01 E-value=0.12 Score=46.42 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.3
Q ss_pred cceEEecCCcchHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ 184 (436)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 569999999999998544
No 363
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.01 E-value=0.086 Score=51.02 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=32.2
Q ss_pred CccccccCcHHHHHHHHHHHhccCCChhhhcC----CCCCCcceEEecCCcchHHHHHHHHH
Q 042771 130 VKWNDVAGLESAKQALQEAVILPVKFPQFFTG----KRQPWRAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 130 ~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~~----~~~~~~~iLl~GppGtGKT~la~aia 187 (436)
.+|+++.-.+.+.+.|...- +..+..++. .....+.+++.+|+|+|||..+-..+
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~ 95 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYG---FEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHT---CCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHH
Confidence 46777766677777765532 111111110 01112579999999999997665443
No 364
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.00 E-value=0.036 Score=56.12 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC----CceEEEeccch
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD----STFFSISSSDL 202 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~----~~~~~v~~~~l 202 (436)
++..+.|.|++|+|||||+++++..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 345799999999999999999999885 34555665544
No 365
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.99 E-value=0.011 Score=53.04 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=23.7
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+...+.|.||.|+|||||++.++....
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4446789999999999999999997653
No 366
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.93 E-value=0.014 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+.-|.|.|++|+||||+++.++..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999876
No 367
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.92 E-value=0.014 Score=49.79 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.9
Q ss_pred ceEEecCCcchHHHHHHHHHHHcC
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l~ 191 (436)
-.+|+||.|+|||+|+++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
No 368
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.89 E-value=0.011 Score=50.24 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=22.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..+.|.|++|+|||||++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998863
No 369
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.86 E-value=0.013 Score=52.77 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444679999999999999999999764
No 370
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=94.86 E-value=0.13 Score=49.47 Aligned_cols=53 Identities=13% Similarity=0.071 Sum_probs=31.5
Q ss_pred CCccccccCcHHHHHHHHHHHhccCCChhhhc-----C-CCCCCcceEEecCCcchHHHHHH
Q 042771 129 NVKWNDVAGLESAKQALQEAVILPVKFPQFFT-----G-KRQPWRAFLLYGPPGTGKSYLAK 184 (436)
Q Consensus 129 ~~~~~dl~G~~~~k~~L~~~~~~~~~~~~~~~-----~-~~~~~~~iLl~GppGtGKT~la~ 184 (436)
..+|+++.-...+.+.|...- ...+..++ . .......+++.+|+|+|||..+-
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~g---~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 24 VKSFEELRLKPQLLQGVYAMG---FNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp SSCTGGGTCCHHHHHHHHHTT---CCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHH
T ss_pred cCCHhhCCCCHHHHHHHHHcC---CCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHH
Confidence 346777766667776666522 11111111 1 01123689999999999998753
No 371
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.85 E-value=0.0071 Score=55.24 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=23.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+.-|+|.|++|+||||+++.+++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 335689999999999999999999984
No 372
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.81 E-value=0.064 Score=51.44 Aligned_cols=26 Identities=27% Similarity=0.407 Sum_probs=22.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..++|.||+|+|||+|++.+++..
T Consensus 173 rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34579999999999999999998864
No 373
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.79 E-value=0.012 Score=52.44 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||.|+|||||++.++..+.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445688999999999999999997653
No 374
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.73 E-value=0.031 Score=49.39 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=25.8
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCceE
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADSTFF 195 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~~~ 195 (436)
+.-|.|.|++|+||||+++.+++.++....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 356899999999999999999999986443
No 375
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.72 E-value=0.033 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.8
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.|+||+|||+|++++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
No 376
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.72 E-value=0.091 Score=47.65 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
+.++|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999764
No 377
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.71 E-value=0.015 Score=52.41 Aligned_cols=24 Identities=33% Similarity=0.522 Sum_probs=21.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+.|.||.|+|||||++.++..+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999865
No 378
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.70 E-value=0.13 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.||.|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 46889999999999999999864
No 379
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.67 E-value=0.027 Score=58.26 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.4
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
..++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999888776653
No 380
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.64 E-value=0.015 Score=53.10 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.++..+.|.||.|+|||||++.++..+.
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445688999999999999999998654
No 381
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.64 E-value=0.025 Score=50.44 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=19.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+.-|.|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568889999999999999999887
No 382
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.63 E-value=0.012 Score=51.77 Aligned_cols=23 Identities=43% Similarity=0.699 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.||.|+|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999875
No 383
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=94.60 E-value=0.24 Score=52.63 Aligned_cols=33 Identities=15% Similarity=0.469 Sum_probs=24.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--------CCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--------DSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--------~~~~~~v~~ 199 (436)
+++++.+|+|+|||..+-..+... +..++.+.+
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999998877666543 555665544
No 384
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.59 E-value=0.016 Score=52.35 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999998764
No 385
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.59 E-value=0.016 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=21.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
.+.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999864
No 386
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.59 E-value=0.016 Score=51.25 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=22.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||.|+|||||++.++..+.
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345688999999999999999997653
No 387
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.57 E-value=0.017 Score=49.72 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+.|.|++|+|||+|++.++...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999999764
No 388
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.56 E-value=0.019 Score=49.76 Aligned_cols=23 Identities=30% Similarity=0.419 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999999975
No 389
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.54 E-value=0.04 Score=54.17 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.1
Q ss_pred cceEEecCCcchHHHHH-HHHH
Q 042771 167 RAFLLYGPPGTGKSYLA-KAVA 187 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la-~aia 187 (436)
+.+|+.||+|+|||..+ -.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 57999999999999976 4344
No 390
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.53 E-value=0.096 Score=49.67 Aligned_cols=26 Identities=27% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998764
No 391
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.49 E-value=0.02 Score=52.37 Aligned_cols=26 Identities=35% Similarity=0.602 Sum_probs=22.6
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+...+.|.||.|+|||||++.++..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 44457899999999999999999975
No 392
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.49 E-value=0.02 Score=50.51 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=25.2
Q ss_pred cceEEecCCcchHHHHHHHHHHHc---CCceEEE
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA---DSTFFSI 197 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l---~~~~~~v 197 (436)
.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 468899999999999999999887 3455444
No 393
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.48 E-value=0.02 Score=47.18 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999865
No 394
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.023 Score=49.83 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=22.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l 190 (436)
...++|.|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
No 395
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.47 E-value=0.092 Score=51.02 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=16.3
Q ss_pred cceEEecCCcchHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAV 186 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~ai 186 (436)
+.+++.+|+|+|||..+-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 47999999999999954444
No 396
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.46 E-value=0.018 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..+.|.||.|+|||||++.++..+
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444679999999999999999999765
No 397
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.46 E-value=0.019 Score=54.75 Aligned_cols=27 Identities=26% Similarity=0.472 Sum_probs=22.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..-+.|.||+|||||||++.++...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344568899999999999999999864
No 398
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.44 E-value=0.021 Score=51.79 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=22.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+...+.|.||.|+|||||++.++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999999975
No 399
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.42 E-value=0.018 Score=52.55 Aligned_cols=28 Identities=25% Similarity=0.470 Sum_probs=23.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+...+.|.||.|+|||||++.++..+.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3445688999999999999999997653
No 400
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.41 E-value=0.018 Score=52.80 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444578999999999999999999765
No 401
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.41 E-value=0.018 Score=52.48 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=22.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||.|+|||||++.++..+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999765
No 402
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.40 E-value=0.18 Score=54.88 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.7
Q ss_pred CcceEEecCCcchHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVA 187 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia 187 (436)
+..++|+||.|+||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3578999999999999999994
No 403
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.39 E-value=0.018 Score=51.42 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344568899999999999999999865
No 404
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.37 E-value=0.018 Score=52.03 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=23.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999998865
No 405
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.37 E-value=0.023 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=24.5
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCCc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADST 193 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~~ 193 (436)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4679999999999999999999987644
No 406
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.34 E-value=0.019 Score=51.71 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||.|+|||||++.++..+.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 445688999999999999999997653
No 407
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.34 E-value=0.018 Score=52.89 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||.|+|||||++.++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 44568999999999999999998764
No 408
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.33 E-value=0.27 Score=53.33 Aligned_cols=33 Identities=15% Similarity=0.469 Sum_probs=25.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHc--------CCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA--------DSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l--------~~~~~~v~~ 199 (436)
.++++.+|+|+|||..+-..+... +..++.+.+
T Consensus 264 ~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~P 304 (936)
T 4a2w_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (936)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 579999999999999877776554 555565554
No 409
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=94.31 E-value=0.021 Score=54.32 Aligned_cols=27 Identities=26% Similarity=0.509 Sum_probs=22.9
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||+|||||||++.++...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 344568899999999999999999764
No 410
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.31 E-value=0.02 Score=52.07 Aligned_cols=27 Identities=30% Similarity=0.434 Sum_probs=23.1
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..+.|.||.|+|||||++.++..+
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344568999999999999999999765
No 411
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.29 E-value=0.021 Score=57.22 Aligned_cols=26 Identities=12% Similarity=0.015 Sum_probs=24.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
..|+|.|.+||||||+++++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999999984
No 412
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.29 E-value=0.019 Score=51.93 Aligned_cols=27 Identities=33% Similarity=0.412 Sum_probs=23.1
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||.|+|||||++.++..+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 445688999999999999999997654
No 413
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.27 E-value=0.028 Score=49.44 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.6
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
..++|.|++|+|||||+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998864
No 414
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.25 E-value=0.021 Score=52.27 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999998764
No 415
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=94.25 E-value=0.024 Score=54.16 Aligned_cols=27 Identities=26% Similarity=0.258 Sum_probs=22.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..-+.|.||+|||||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 344568899999999999999999764
No 416
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.24 E-value=0.02 Score=52.43 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.9
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||.|+|||||++.++..+
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344568899999999999999999765
No 417
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=94.24 E-value=0.024 Score=54.22 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..-+.|.||+|||||||++.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 344568899999999999999999864
No 418
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=94.21 E-value=0.26 Score=49.40 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=18.3
Q ss_pred CcceEEecCCcchHHHHHHH-HHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKA-VATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~a-ia~~ 189 (436)
...+++.+|+|+|||..+-. +...
T Consensus 158 ~~~~ll~apTGsGKT~~~~~~il~~ 182 (508)
T 3fho_A 158 PRNMIGQSQSGTGKTAAFALTMLSR 182 (508)
T ss_dssp CCCEEEECCSSTTSHHHHHHHHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHHHH
Confidence 37899999999999987443 3443
No 419
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.20 E-value=0.026 Score=46.89 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 420
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=94.19 E-value=0.025 Score=54.40 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=22.9
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..-+.|.||+|||||||++.++...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 344568899999999999999999864
No 421
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.18 E-value=0.024 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.3
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||+|||||||++.++...
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33568899999999999999999764
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=94.15 E-value=0.026 Score=54.25 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+..-+.|.||+|||||||++.++...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344568899999999999999999764
No 423
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.13 E-value=0.025 Score=47.24 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.|++|+|||+|++.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999863
No 424
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=94.11 E-value=0.066 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=20.3
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++|+++|+|+|||..+-.++..+
T Consensus 199 ~~~ll~~~TGsGKT~~~~~~~~~l 222 (590)
T 3h1t_A 199 KRSLITMATGTGKTVVAFQISWKL 222 (590)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEecCCCChHHHHHHHHHHH
Confidence 568999999999999987777653
No 425
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.10 E-value=0.022 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=23.0
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
+...+.|.||.|+|||||++.++..+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 445688999999999999999998653
No 426
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.08 E-value=0.021 Score=48.69 Aligned_cols=21 Identities=24% Similarity=0.551 Sum_probs=19.5
Q ss_pred ceEEecCCcchHHHHHHHHHH
Q 042771 168 AFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~ 188 (436)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=94.08 E-value=0.023 Score=54.28 Aligned_cols=27 Identities=26% Similarity=0.466 Sum_probs=22.8
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||+|||||||++.++...
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344568899999999999999999764
No 428
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.08 E-value=0.023 Score=51.62 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
++..+.|.||.|+|||||++.++..+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44568899999999999999999865
No 429
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.05 E-value=0.028 Score=46.44 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=20.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 430
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.02 E-value=0.044 Score=58.19 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=19.4
Q ss_pred ceEEecCCcchHHHHHHHHHHHc
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l 190 (436)
..+|.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999888776653
No 431
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.01 E-value=0.028 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999865
No 432
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.01 E-value=0.028 Score=46.39 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999865
No 433
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=94.00 E-value=0.33 Score=50.54 Aligned_cols=22 Identities=18% Similarity=0.593 Sum_probs=18.8
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
.++++.+|+|+|||..+-..+.
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~ 50 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICE 50 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHH
Confidence 5799999999999998776654
No 434
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.97 E-value=0.028 Score=54.03 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.4
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||+|||||||.+.++...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 34568899999999999999999764
No 435
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.97 E-value=0.4 Score=41.95 Aligned_cols=32 Identities=19% Similarity=0.130 Sum_probs=21.3
Q ss_pred cceEEecCCcchHHH-HHHHHHHH--cCCceEEEe
Q 042771 167 RAFLLYGPPGTGKSY-LAKAVATE--ADSTFFSIS 198 (436)
Q Consensus 167 ~~iLl~GppGtGKT~-la~aia~~--l~~~~~~v~ 198 (436)
.-.+++||-|+|||+ |.+.+-+. .+..++.+.
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 457889999999999 55554332 255555443
No 436
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.97 E-value=0.03 Score=46.47 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999865
No 437
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.92 E-value=0.036 Score=49.19 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=23.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHHcCC
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEADS 192 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l~~ 192 (436)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356888999999999999999987654
No 438
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.89 E-value=0.038 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=21.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...+++.|++|+|||+|+..+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 367999999999999999999764
No 439
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.89 E-value=0.039 Score=62.07 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHcC
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l~ 191 (436)
.+++..+.|+||+|+|||||++.+.+...
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 45567799999999999999999998764
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.87 E-value=0.029 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.-.+|+||.|+|||++..|+.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998765
No 441
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.86 E-value=0.03 Score=46.86 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.4
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
No 442
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.86 E-value=0.032 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999864
No 443
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.85 E-value=0.032 Score=46.33 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.4
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+++.|++|+|||+|++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 444
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.80 E-value=0.032 Score=46.98 Aligned_cols=24 Identities=21% Similarity=0.405 Sum_probs=21.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999864
No 445
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.78 E-value=0.063 Score=47.29 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
..++|.|++|+|||+|+..++...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999875
No 446
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.78 E-value=0.033 Score=46.30 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 447
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=93.78 E-value=0.11 Score=52.50 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=28.8
Q ss_pred cceEEecCCcchHHHHHHHHHHHcC---CceEEEeccch
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEAD---STFFSISSSDL 202 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~---~~~~~v~~~~l 202 (436)
..|+|.|++|+||||+++.+++.++ .++..++...+
T Consensus 373 ~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 373 FCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred eEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 5689999999999999999998764 45666665443
No 448
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.78 E-value=0.032 Score=46.36 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 449
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.76 E-value=0.032 Score=47.09 Aligned_cols=23 Identities=35% Similarity=0.498 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+++++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56999999999999999999864
No 450
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.72 E-value=0.035 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999753
No 451
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.72 E-value=0.026 Score=51.51 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.3
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l 190 (436)
...+.|.||.|+|||||++.++..+
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999765
No 452
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.70 E-value=0.028 Score=52.47 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=24.0
Q ss_pred CCCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 163 RQPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 163 ~~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
..+...+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3455679999999999999999998865
No 453
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.69 E-value=0.036 Score=45.86 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 454
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.68 E-value=0.034 Score=53.80 Aligned_cols=26 Identities=35% Similarity=0.381 Sum_probs=22.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHH
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
.+..-+.|.||+|||||||++.++..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 44457999999999999999999974
No 455
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.68 E-value=0.044 Score=46.03 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...|+|.|++|+|||+|+..+...
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999763
No 456
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.67 E-value=0.035 Score=49.45 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHcCCceEEE
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSI 197 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v 197 (436)
.++.-+.|.||.|+||||+++.++.. +..++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34456889999999999999999987 4444433
No 457
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.66 E-value=0.037 Score=45.91 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.8
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 458
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.65 E-value=0.035 Score=46.18 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=19.1
Q ss_pred ceEEecCCcchHHHHHHHHHH
Q 042771 168 AFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~ 188 (436)
.++|.|++|+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999963
No 459
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.63 E-value=0.038 Score=45.70 Aligned_cols=22 Identities=18% Similarity=0.283 Sum_probs=19.9
Q ss_pred ceEEecCCcchHHHHHHHHHHH
Q 042771 168 AFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~ 189 (436)
.++|.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.63 E-value=0.035 Score=48.96 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.7
Q ss_pred cceEEecCCcchHHHHHHHHHHHc
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l 190 (436)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458889999999999999999886
No 461
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.59 E-value=0.031 Score=51.80 Aligned_cols=27 Identities=22% Similarity=0.317 Sum_probs=23.2
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.++..+.|.||.|+|||||++.++..+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 444578999999999999999999764
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.57 E-value=0.036 Score=47.13 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999863
No 463
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.55 E-value=0.039 Score=46.98 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|++.+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
No 464
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.54 E-value=0.033 Score=46.18 Aligned_cols=22 Identities=45% Similarity=0.676 Sum_probs=19.5
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
-.++|.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3589999999999999999863
No 465
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.54 E-value=0.037 Score=46.00 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999863
No 466
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.50 E-value=0.068 Score=51.71 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=0.0
Q ss_pred CCCCCcceEEecCCcchHHHHHHHHHHHc---CCceEEEec
Q 042771 162 KRQPWRAFLLYGPPGTGKSYLAKAVATEA---DSTFFSISS 199 (436)
Q Consensus 162 ~~~~~~~iLl~GppGtGKT~la~aia~~l---~~~~~~v~~ 199 (436)
......++++.||+|+|||++++.++..+ +..++.++.
T Consensus 31 ~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 31 GDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp TTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
No 467
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.48 E-value=0.92 Score=46.80 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=25.5
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHcCCceEEEecc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSS 200 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l~~~~~~v~~~ 200 (436)
....+++.||+|+|||+.+-...-+-+..++.+.+.
T Consensus 231 ~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PT 266 (666)
T 3o8b_A 231 SFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 266 (666)
T ss_dssp SCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESC
T ss_pred cCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcch
Confidence 346799999999999977665555555556665543
No 468
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.45 E-value=0.039 Score=46.27 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.8
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 469
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.42 E-value=0.04 Score=46.86 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999875
No 470
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.41 E-value=0.043 Score=46.02 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=21.1
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999875
No 471
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.40 E-value=0.042 Score=46.99 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|++.+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 472
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=93.39 E-value=0.19 Score=54.74 Aligned_cols=33 Identities=15% Similarity=0.228 Sum_probs=23.3
Q ss_pred cceEEecCCcchHHHHHHHHHHH---cCCceEEEec
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE---ADSTFFSISS 199 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~---l~~~~~~v~~ 199 (436)
.++++.+|+|+|||.++...... -+..++++.+
T Consensus 102 ~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~P 137 (1010)
T 2xgj_A 102 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 137 (1010)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECC
Confidence 47999999999999987543332 2555666554
No 473
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.39 E-value=0.094 Score=47.36 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.4
Q ss_pred CcceEEecCCcchHHHHHHHHHHHc--CCceEEEe
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATEA--DSTFFSIS 198 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~l--~~~~~~v~ 198 (436)
...+++.|.+|+||||++..++..+ +..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3678999999999999999999776 55555554
No 474
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.38 E-value=0.043 Score=46.77 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
No 475
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.37 E-value=0.043 Score=46.53 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|+..+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999865
No 476
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.37 E-value=0.1 Score=47.41 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|+||+|||+|..++...
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46999999999999999999763
No 477
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=93.35 E-value=0.001 Score=66.20 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=44.7
Q ss_pred HHHHhhcCC-CCCCceEEEeccCCCCcccHHHHh--hccc--eEEcCCCC--HHHHHHHHHHHhCCCCCCCChhhHHHHH
Q 042771 257 LLVQMQGVG-HNDQKVLVLAATNTPYALDQAIRR--RFDK--RIYIPLPD--LKARQHMFKVHLGDTPHNLTESDFESLA 329 (436)
Q Consensus 257 ll~~l~~~~-~~~~~v~vi~ttn~~~~l~~~l~~--Rf~~--~i~~~~p~--~~~r~~il~~~l~~~~~~~~~~~~~~la 329 (436)
++..++... .....++|++|||.++.++++++| ||+. .++++.|+ .+.|.+|++.+. ..+++.++
T Consensus 176 ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a 247 (456)
T 2c9o_A 176 IFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVAN 247 (456)
T ss_dssp HHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC
T ss_pred HHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHH
Confidence 555554222 223446667999999999999976 9987 56777774 467777776443 34788999
Q ss_pred HHcCCCCHHHHHHHHHH
Q 042771 330 RKTEGFSGSDISVCVKD 346 (436)
Q Consensus 330 ~~t~g~s~~dl~~l~~~ 346 (436)
..+.| ++||..+|..
T Consensus 248 ~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 248 ARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -----------------
T ss_pred HhCCC--hhHHHHHHhh
Confidence 99998 8999999854
No 478
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.34 E-value=0.041 Score=46.21 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=21.2
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
No 479
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.30 E-value=0.094 Score=48.02 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999863
No 480
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.29 E-value=0.051 Score=46.56 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...|+|.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 481
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=93.28 E-value=0.076 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=19.8
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
.++|+.+|+|+|||..+-.++..
T Consensus 23 ~~~ll~~~TGsGKTl~~~~~i~~ 45 (699)
T 4gl2_A 23 KNIIICLPTGCGKTRVAVYIAKD 45 (699)
T ss_dssp CCEEECCCTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcHHHHHHHHHHH
Confidence 47999999999999988877654
No 482
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.26 E-value=0.043 Score=46.47 Aligned_cols=23 Identities=39% Similarity=0.561 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|++.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 483
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.25 E-value=0.066 Score=56.88 Aligned_cols=31 Identities=26% Similarity=0.490 Sum_probs=22.1
Q ss_pred ceEEecCCcchHHHHHHHHHHHc----CCceEEEe
Q 042771 168 AFLLYGPPGTGKSYLAKAVATEA----DSTFFSIS 198 (436)
Q Consensus 168 ~iLl~GppGtGKT~la~aia~~l----~~~~~~v~ 198 (436)
..++.||||||||+++..+...+ +..++.+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a 411 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCA 411 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEc
Confidence 57999999999999877665432 44444444
No 484
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.25 E-value=0.046 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.9
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57999999999999999999864
No 485
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.25 E-value=0.047 Score=46.15 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|++.+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 57999999999999999999864
No 486
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.25 E-value=0.053 Score=45.82 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.9
Q ss_pred CCcceEEecCCcchHHHHHHHHHHH
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~ 189 (436)
+...|+|.|++|+|||+|++.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3357999999999999999999865
No 487
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.19 E-value=0.047 Score=46.68 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CcceEEecCCcchHHHHHHHHHHH
Q 042771 166 WRAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 166 ~~~iLl~GppGtGKT~la~aia~~ 189 (436)
...++|.|++|+|||+|+..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999753
No 488
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.18 E-value=0.14 Score=46.93 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.7
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..+.|.|.||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999764
No 489
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.17 E-value=0.049 Score=52.05 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.0
Q ss_pred CCCcceEEecCCcchHHHHHHHHHHHc
Q 042771 164 QPWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 164 ~~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
.+...+.|.||+|+|||||+++++...
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 344568899999999999999999754
No 490
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.16 E-value=0.046 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.405 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999873
No 491
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.14 E-value=0.043 Score=46.09 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.1
Q ss_pred cceEEecCCcchHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVAT 188 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~ 188 (436)
..|+|.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999964
No 492
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.13 E-value=0.08 Score=46.27 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=24.0
Q ss_pred eEEecCCcchHHHHHHHHHHHc--CCceEEE
Q 042771 169 FLLYGPPGTGKSYLAKAVATEA--DSTFFSI 197 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l--~~~~~~v 197 (436)
|.|-|+.|+||||+++.+++.+ +.+++..
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 7788999999999999999988 4455444
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=93.11 E-value=0.049 Score=53.93 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=22.6
Q ss_pred CCcceEEecCCcchHHHHHHHHHHHc
Q 042771 165 PWRAFLLYGPPGTGKSYLAKAVATEA 190 (436)
Q Consensus 165 ~~~~iLl~GppGtGKT~la~aia~~l 190 (436)
+...+.|.||.|+|||||++.++...
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44579999999999999999998864
No 494
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=93.11 E-value=0.077 Score=50.48 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.5
Q ss_pred cceEEecCCcchHHHHHHHHHHHcCCce
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATEADSTF 194 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~l~~~~ 194 (436)
..+.|.||+|+|||||++.+++......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 4689999999999999999999986543
No 495
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.08 E-value=0.051 Score=45.66 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
No 496
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=93.06 E-value=0.019 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.258 Sum_probs=20.6
Q ss_pred eEEecCCcchHHHHHHHHHHHcC
Q 042771 169 FLLYGPPGTGKSYLAKAVATEAD 191 (436)
Q Consensus 169 iLl~GppGtGKT~la~aia~~l~ 191 (436)
+.|.||+|+|||||+++|+..+.
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56789999999999999998764
No 497
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.06 E-value=0.051 Score=46.36 Aligned_cols=23 Identities=26% Similarity=0.196 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999888764
No 498
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.06 E-value=0.052 Score=46.30 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..|+|.|++|+|||+|+..+...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999865
No 499
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.05 E-value=0.044 Score=46.08 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.0
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999874
No 500
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.05 E-value=0.052 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.6
Q ss_pred cceEEecCCcchHHHHHHHHHHH
Q 042771 167 RAFLLYGPPGTGKSYLAKAVATE 189 (436)
Q Consensus 167 ~~iLl~GppGtGKT~la~aia~~ 189 (436)
..++|.|++|+|||+|++.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
Done!