BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>042773
MNAAIFPGSDPSHLFCCSYSLAPGTPMCECSRLAYWTPTLFNGRFTVEGCKGVFCVATPR
TLEDPVGLEKELALPAVQGTLNVLEAAKRLG

High Scoring Gene Products

Symbol, full name Information P value
AT2G02400 protein from Arabidopsis thaliana 1.4e-12
AT5G58490 protein from Arabidopsis thaliana 0.00011
AT1G76470 protein from Arabidopsis thaliana 0.00029

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  042773
        (91 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2056171 - symbol:AT2G02400 species:3702 "Arabi...   171  1.4e-12   1
TAIR|locus:2171258 - symbol:AT5G58490 species:3702 "Arabi...   100  0.00011   1
TAIR|locus:2011741 - symbol:AT1G76470 species:3702 "Arabi...    96  0.00029   1


>TAIR|locus:2056171 [details] [associations]
            symbol:AT2G02400 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0009809 "lignin biosynthetic
            process" evidence=ISS] [GO:0016621 "cinnamoyl-CoA reductase
            activity" evidence=ISS] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
            [GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
            evidence=RCA] InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040
            GO:GO:0005886 GO:GO:0003824 EMBL:CP002685 GenomeReviews:CT485783_GR
            eggNOG:COG0451 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
            GO:GO:0044237 EMBL:AC005312 HOGENOM:HOG000167998 EMBL:BT005781
            EMBL:BT006079 EMBL:AK228447 IPI:IPI00542037 PIR:C84436
            RefSeq:NP_178345.1 UniGene:At.41493 UniGene:At.69541
            ProteinModelPortal:Q9ZVQ2 SMR:Q9ZVQ2 STRING:Q9ZVQ2 PaxDb:Q9ZVQ2
            PRIDE:Q9ZVQ2 DNASU:814771 EnsemblPlants:AT2G02400.1 GeneID:814771
            KEGG:ath:AT2G02400 TAIR:At2g02400 InParanoid:Q9ZVQ2 OMA:NGFIGSW
            PhylomeDB:Q9ZVQ2 ProtClustDB:CLSN2683687 ArrayExpress:Q9ZVQ2
            Genevestigator:Q9ZVQ2 Uniprot:Q9ZVQ2
        Length = 318

 Score = 171 (65.3 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 42/92 (45%), Positives = 58/92 (63%)

Query:     1 MNAAIFPGSDPSHLFCCSYSLAPGTPMCECSRLAYWTPTLFNGRF---TVEGCKGVFCVA 57
             ++A+I+PGSDP+HL        PG+     S++  +   L +       ++GC GVF VA
Sbjct:    31 IHASIYPGSDPTHLL-----QLPGSD----SKIKIFEADLLDSDAISRAIDGCAGVFHVA 81

Query:    58 TPRTLEDPVGLEKELALPAVQGTLNVLEAAKR 89
             +P TL+ PV  EKEL  PAV+GT+NVLEAAKR
Sbjct:    82 SPCTLDPPVDPEKELVEPAVKGTINVLEAAKR 113


>TAIR|locus:2171258 [details] [associations]
            symbol:AT5G58490 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0009809 "lignin biosynthetic
            process" evidence=ISS] [GO:0016621 "cinnamoyl-CoA reductase
            activity" evidence=ISS] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0019761 "glucosinolate
            biosynthetic process" evidence=RCA] InterPro:IPR001509 Pfam:PF01370
            InterPro:IPR016040 GO:GO:0005829 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0003824 eggNOG:COG0451
            GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662 GO:GO:0044237
            HOGENOM:HOG000167998 EMBL:AB025632 EMBL:AY086975 EMBL:BT002742
            IPI:IPI00534797 RefSeq:NP_200657.1 UniGene:At.28374
            ProteinModelPortal:Q9FGH3 SMR:Q9FGH3 STRING:Q9FGH3 PaxDb:Q9FGH3
            PRIDE:Q9FGH3 EnsemblPlants:AT5G58490.1 GeneID:835962
            KEGG:ath:AT5G58490 TAIR:At5g58490 InParanoid:Q9FGH3 OMA:DEKETKH
            PhylomeDB:Q9FGH3 ProtClustDB:CLSN2686256 ArrayExpress:Q9FGH3
            Genevestigator:Q9FGH3 Uniprot:Q9FGH3
        Length = 324

 Score = 100 (40.3 bits), Expect = 0.00011, P = 0.00011
 Identities = 20/42 (47%), Positives = 30/42 (71%)

Query:    47 VEGCKGVFCVATPRTLEDPVGLEKELALPAVQGTLNVLEAAK 88
             + GC GVF +A+P  +++    +K+L  PAV+GT+NVL AAK
Sbjct:    76 INGCSGVFHLASPCIVDEVQDPQKQLLDPAVKGTINVLTAAK 117


>TAIR|locus:2011741 [details] [associations]
            symbol:AT1G76470 species:3702 "Arabidopsis thaliana"
            [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003824
            "catalytic activity" evidence=IEA] [GO:0009809 "lignin biosynthetic
            process" evidence=ISS] [GO:0016621 "cinnamoyl-CoA reductase
            activity" evidence=ISS] [GO:0044237 "cellular metabolic process"
            evidence=IEA] [GO:0050662 "coenzyme binding" evidence=IEA]
            InterPro:IPR001509 Pfam:PF01370 InterPro:IPR016040 EMBL:CP002684
            GO:GO:0003824 GO:GO:0000166 Gene3D:3.40.50.720 GO:GO:0050662
            GO:GO:0044237 IPI:IPI00541180 RefSeq:NP_177773.2 UniGene:At.27517
            ProteinModelPortal:F4I2E5 SMR:F4I2E5 PRIDE:F4I2E5
            EnsemblPlants:AT1G76470.1 GeneID:843980 KEGG:ath:AT1G76470
            OMA:HICAPHV Uniprot:F4I2E5
        Length = 325

 Score = 96 (38.9 bits), Expect = 0.00029, P = 0.00029
 Identities = 22/45 (48%), Positives = 29/45 (64%)

Query:    43 GRFT-VEGCKGVFCVATPRTLEDPVGLEKELALPAVQGTLNVLEA 86
             G F+ ++GC GVF +A+P   E     E+EL  PA+ GT NVLEA
Sbjct:    68 GLFSAIDGCSGVFHIASPVPFEGVPLTEEELIKPALTGTKNVLEA 112


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.138   0.452    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       91        91   0.00091  102 3  11 22  0.47    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  530 (56 KB)
  Total size of DFA:  111 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.88u 0.12s 10.00t   Elapsed:  00:00:00
  Total cpu time:  9.88u 0.12s 10.00t   Elapsed:  00:00:00
  Start:  Sat May 11 00:12:00 2013   End:  Sat May 11 00:12:00 2013

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