BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042776
(147 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + + G +II+ TN + LDPALLRPGR+D + + N +G
Sbjct: 304 TLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 23 IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG----FRI 59
++F TN N LDPALLRPGR+D + S + G FRI
Sbjct: 351 VMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRI 391
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG+ ++ D I++ +TN + LD AL+RPGR+D H+
Sbjct: 129 TLNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHV 172
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIH 48
T+ LLN +DG +S + I+ TN + LDPALLRPGR+D I
Sbjct: 271 TMLELLNQLDGFETSKNIK--IIMATNRLDILDPALLRPGRIDRKIE 315
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65
LL +DG S + ++ TN + LDPALLRPGR+D I R L+ +
Sbjct: 299 LLTQMDGFDQSTNVK--VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTI 356
Query: 66 GINDHNLFPEID 77
+ +L PE D
Sbjct: 357 A-SKMSLAPEAD 367
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRIL 60
TL+ +L +DG G+E IIV TN + LDPALLRPGR D + + + G +
Sbjct: 134 TLNQMLVEMDGFE---GNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQI 190
Query: 61 VSNYLGINDHNLFPEIDELL 80
+ ++ L P+ID +
Sbjct: 191 LKVHM--RRVPLAPDIDAAI 208
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + + GD +II TN + LDPA+LRPGR D I + + G
Sbjct: 140 TLMQLLAEMDG-FDARGDVKII-GATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHI 47
T+ LLN +DG + GD ++I+ TN LDPAL+RPGR+D I
Sbjct: 305 TMLELLNQLDG-FDDRGDVKVIM-ATNKIETLDPALIRPGRIDRKI 348
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRIL 60
TL+ LL +DG S I++ TN LDPAL+RPGR D + + + +G IL
Sbjct: 134 TLNQLLAEMDGFGSENAP-VIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEIL 192
Query: 61 VSNYLGI---NDHNL 72
+ G+ ND NL
Sbjct: 193 KVHIKGVKLANDVNL 207
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIH 48
T+ LLN +DG S D+R+ ++ TN + LDPALLR GR+D I
Sbjct: 304 TMLELLNQLDGFSS---DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG D I+V TN + LDPALLRPGR D I + + G
Sbjct: 138 TLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 190
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 138 TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 23/46 (50%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG S G I++ TN + LDPALLRPGR D I
Sbjct: 138 TLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKI 181
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG D I+V TN + LDPALLRPGR D I + + G
Sbjct: 162 TLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKG 214
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 37.0 bits (84), Expect = 0.004, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG D I+V TN + LDPALLRPGR D I
Sbjct: 153 TLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQI 196
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 36.6 bits (83), Expect = 0.005, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG D I+V TN + LDPALLRPGR D I
Sbjct: 162 TLNQLLVEMDGFEK---DTAIVVMAATNRPDILDPALLRPGRFDRQI 205
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 36.2 bits (82), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPS 55
LL +DGL + + I+ TN + +DPA+LRPGR+D + + P+
Sbjct: 134 LLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHM 49
++ +L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 138 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 183
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHM 49
++ +L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 600 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 35.4 bits (80), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
Score = 35.0 bits (79), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHM 49
++ +L +DG+ S I+ TN + +DPA+LRPGR+D I++
Sbjct: 600 VINQILTEMDGM--STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYI 645
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
+S LL +DGL I++ TN N +DPAL R GR D + + + +G
Sbjct: 325 VSQLLTLMDGLKQRA--HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCN 53
L+ F DG+ S GD+R++V TN LD A+LR R +++S N
Sbjct: 239 LIEF-DGVQS-AGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPN 283
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 26.6 bits (57), Expect = 6.1, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLR--PGRM-DMHIHMSYCNPSGFRI 59
+S L N+ +G W +R +VF NH N+ ++L R+ M + +P GF
Sbjct: 274 MSYLKNWGEG-WGFMPSDRALVFVDNHDNQRGHSILTFWDARLYKMAVGFMLAHPYGFTR 332
Query: 60 LVSNY 64
++S+Y
Sbjct: 333 VMSSY 337
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,533,374
Number of Sequences: 62578
Number of extensions: 116560
Number of successful extensions: 326
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 28
length of query: 147
length of database: 14,973,337
effective HSP length: 90
effective length of query: 57
effective length of database: 9,341,317
effective search space: 532455069
effective search space used: 532455069
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)