BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 042776
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P6Q3|BCS1_SCHPO Probable mitochondrial chaperone bcs1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC644.07 PE=2 SV=1
Length = 449
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRIL 60
+T SGLLN +DG+ SS DERII TTNH +LDPAL+RPGR+D+ ++ P R +
Sbjct: 322 VTFSGLLNALDGVTSS--DERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQVREM 379
Query: 61 VSNYLGINDHNLFPEI-DELLTKLMKSEVAEVALEGLVEFLKRKKTEVAEVG 111
+ + G H+ PE+ D+L + + +L+GL K + ++
Sbjct: 380 FTRFYG---HS--PEMADDLSDIVCPKNTSMASLQGLFVMNKSSPADAVDMA 426
>sp|Q5UR45|YL572_MIMIV Putative AAA family ATPase L572 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L572 PE=3 SV=1
Length = 196
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 3/77 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRIL 60
LTLSG+LN +DG+++S G RI++ TTNH LDPAL+R GR+DM I S C+ +
Sbjct: 92 LTLSGILNSLDGIFNSEG--RIVIMTTNHSEVLDPALIRRGRIDMQIEFSNCDRYQIAKM 149
Query: 61 VSNYLGIN-DHNLFPEI 76
N+ G N D ++ +I
Sbjct: 150 YENFYGKNADSDILSKI 166
>sp|Q9Y276|BCS1_HUMAN Mitochondrial chaperone BCS1 OS=Homo sapiens GN=BCS1L PE=1 SV=1
Length = 419
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+D+ ++ YC+
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNHVDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q5E9H5|BCS1_BOVIN Mitochondrial chaperone BCS1 OS=Bos taurus GN=BCS1L PE=2 SV=1
Length = 419
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+DM ++ +C+
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDMKEYVGHCS 357
>sp|Q9CZP5|BCS1_MOUSE Mitochondrial chaperone BCS1 OS=Mus musculus GN=Bcs1l PE=1 SV=1
Length = 418
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ S+ + RI+ TTN+ +RLDPAL+RPGR+D+ ++ YC+
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNYIDRLDPALIRPGRVDLKEYVGYCS 357
>sp|Q7ZTL7|BCS1_XENLA Mitochondrial chaperone BCS1 OS=Xenopus laevis GN=bcs1l PE=2 SV=1
Length = 419
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 40/53 (75%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ S+ + RI+ TTNH +RLDPAL+RPGR+D+ ++ +C
Sbjct: 307 LTFSGLLNALDGVAST--EARIVFMTTNHIDRLDPALIRPGRVDVKQYVGHCT 357
>sp|Q7ZV60|BCS1_DANRE Mitochondrial chaperone BCS1 OS=Danio rerio GN=bcs1l PE=2 SV=2
Length = 420
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 39/53 (73%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ SS + RI+ TTN RLDPAL+RPGR+D+ ++ +C+
Sbjct: 308 LTFSGLLNALDGVASS--EARIVFMTTNFIERLDPALVRPGRVDLKQYVGHCS 358
>sp|Q54DY9|BCS1B_DICDI Probable mitochondrial chaperone BCS1-B OS=Dictyostelium discoideum
GN=bcsl1b PE=3 SV=1
Length = 458
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
LT SGLLN +DG+ +S G RI+ TTNH +LD L+RPGR+D+ I + C+
Sbjct: 348 LTFSGLLNALDGVAASEG--RILFMTTNHLEKLDKVLIRPGRVDLQIEIGLCS 398
>sp|P32839|BCS1_YEAST Mitochondrial chaperone BCS1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BCS1 PE=1 SV=2
Length = 456
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNP 54
+T SGLLN +DG+ SS +E I TTNH +LD A++RPGR+D + + P
Sbjct: 340 VTFSGLLNALDGVTSS--EETITFMTTNHPEKLDAAIMRPGRIDYKVFVGNATP 391
>sp|Q8TX03|PAN_METKA Proteasome-activating nucleotidase OS=Methanopyrus kandleri (strain
AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=pan PE=3
SV=1
Length = 436
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 8/85 (9%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRIL 60
TL+ LL +DG + D ++I TN K+ LDPALLRPGR D HI + + G + I
Sbjct: 302 TLTQLLAEMDG-FDPLDDIKVIA-ATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIF 359
Query: 61 VSNYLGINDHNLFPEIDELLTKLMK 85
+ D NL ++D L KL K
Sbjct: 360 ---KIHTRDMNLAEDVD--LQKLAK 379
>sp|Q9HGM3|YTA12_SCHPO Mitochondrial respiratory chain complexes assembly protein rca1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=yta12 PE=3 SV=1
Length = 773
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 63/130 (48%), Gaps = 9/130 (6%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHIHMSYCNPSG---- 56
TL+ LL +DG SS E I+VF TN + LDPALLRPGR D I + + G
Sbjct: 419 TLNQLLVEMDGFTSS---EHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQI 475
Query: 57 FRILVSNYLGINDHNLFPEIDELLTK-LMKSEVAEVALEGLVEFLKRKKTEVAEVGNKQK 115
F++ + + ++ +L + +LT +++ V EG + + EV V +Q
Sbjct: 476 FKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQA 535
Query: 116 ASREAEGDEK 125
R G EK
Sbjct: 536 IERVTAGLEK 545
>sp|Q8SR13|PRS6A_ENCCU 26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPT5 PE=1 SV=1
Length = 401
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGF-RIL 60
T+ LLN +DG SS +E I+ TN + LDPALLR GR+D I N G RIL
Sbjct: 271 TMLELLNQLDGFSSS--EEVKIIAATNRVDILDPALLRSGRLDRKIEFPLPNTLGRKRIL 328
Query: 61 V--SNYLGINDHNLFPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEVAE 109
+ + + D F E+ ++ V +E + L+++KTE+++
Sbjct: 329 QIHARKMSVRDDVNFDELARSTEGFNGAQCKAVCVEAGMAALRKEKTEISQ 379
>sp|D2ATX1|ARC_STRRD Proteasome-associated ATPase OS=Streptosporangium roseum (strain
ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) GN=arc PE=3
SV=1
Length = 587
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64
LL+ IDG+ G E +IV +N ++ +DPA+LRPGR+D+ I + + + + S Y
Sbjct: 373 LLSEIDGVE---GLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAKDIFSKY 429
Query: 65 LGINDHNLFPE 75
L I D L PE
Sbjct: 430 L-IEDLPLHPE 439
>sp|Q7URM7|FTSH2_RHOBA ATP-dependent zinc metalloprotease FtsH 2 OS=Rhodopirellula baltica
(strain SH1) GN=ftsH2 PE=3 SV=1
Length = 728
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG S+ G I+V TN LDPALLRPGR D H+ + + +G
Sbjct: 373 TLNALLVEMDGFDSNSG--VIVVAATNRPETLDPALLRPGRFDRHVLVDRPDVAG 425
>sp|Q54HY8|BCS1A_DICDI Probable mitochondrial chaperone BCS1-A OS=Dictyostelium discoideum
GN=bcs1la PE=3 SV=1
Length = 421
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPS 55
LT SGLLN +DG+ S G RI+ TTN LD AL+R GR+D+ I +S S
Sbjct: 306 LTYSGLLNALDGVASQEG--RILFMTTNKIELLDSALIREGRIDLKIKVSNATKS 358
>sp|D1BHU2|ARC_SANKS Proteasome-associated ATPase OS=Sanguibacter keddieii (strain ATCC
51767 / DSM 10542 / NCFB 3025 / ST-74) GN=arc PE=3 SV=1
Length = 581
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65
LL+ IDG+ D I++ +N ++ +DPA+LRPGR+D+ I + +P G R + + YL
Sbjct: 364 LLSEIDGVERL--DNVIVIGASNREDMIDPAILRPGRLDVKIKIERPDPEGAREIFAKYL 421
>sp|P46465|PRS6A_ORYSJ 26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp.
japonica GN=TBP1 PE=2 SV=2
Length = 429
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRI 59
T+ LLN +DG S DERI ++ TN + LDPAL+R GR+D I + + RI
Sbjct: 299 TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARI 355
Query: 60 LV--SNYLGINDHNLFPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEV 107
L S + +N F E+ +++ V +E + L+R TEV
Sbjct: 356 LQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 405
>sp|O74445|PRS10_SCHPO Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rpt4 PE=3 SV=2
Length = 388
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LLN +DG + G +II+ TN + LDPALLRPGR+D I + N G
Sbjct: 255 TLMELLNQMDG-FDYLGQTKIIM-ATNRPDTLDPALLRPGRLDRKIEIPLPNEVG 307
>sp|D4GUJ7|PAN1_HALVD Proteasome-activating nucleotidase 1 OS=Haloferax volcanii (strain
ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB
2012 / VKM B-1768 / DS2) GN=pan1 PE=2 SV=2
Length = 406
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILV 61
T+ LL +DG + G+ RII TN + LDPA+LRPGR D I + N G I+
Sbjct: 273 TMMQLLAEMDG-FDERGNIRIIA-ATNRFDMLDPAILRPGRFDRLIEVPKPNEDGREIIF 330
Query: 62 SNY---LGINDHNLFPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEV 107
+ + ++D F E+ E+ +++ V E + ++ +TE+
Sbjct: 331 QIHTRKMNVSDDVDFVELAEMADNASGADIKAVCTEAGMFAIRDDRTEI 379
>sp|O17071|PRS10_CAEEL Probable 26S protease regulatory subunit 10B OS=Caenorhabditis
elegans GN=rpt-4 PE=1 SV=2
Length = 406
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
TL LLN +DG + S G ++I+ TN + LDPALLRPGR+D I + N
Sbjct: 273 TLMELLNQLDG-FDSLGKVKVIM-ATNRPDTLDPALLRPGRLDRKIEIGLPN 322
>sp|Q3JMH0|FTSH_BURP1 ATP-dependent zinc metalloprotease FtsH OS=Burkholderia
pseudomallei (strain 1710b) GN=ftsH PE=3 SV=2
Length = 666
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILV 61
TL+ LL +DG ++ G I++ TN LDPALLRPGR D HI + + +G R ++
Sbjct: 292 TLNQLLVEMDGFQANSG--VILMAATNRPEILDPALLRPGRFDRHIAIDRPDLTGRRQIL 349
Query: 62 SNYLGINDHNLFPEID 77
S + + L P++D
Sbjct: 350 SVH--VKHVKLGPDVD 363
>sp|D2QZ34|FTSH_PIRSD ATP-dependent zinc metalloprotease FtsH OS=Pirellula staleyi
(strain ATCC 27377 / DSM 6068 / ICPB 4128) GN=ftsH PE=3
SV=1
Length = 700
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHI 47
TL+ LL +DG S+ G I++ TN LDPALLRPGR D H+
Sbjct: 344 TLNALLVEMDGFGSNSG--VIVMAATNRPETLDPALLRPGRFDRHV 387
>sp|Q9SEI3|PS10A_ARATH 26S protease regulatory subunit 10B homolog A OS=Arabidopsis
thaliana GN=RPT4A PE=2 SV=1
Length = 399
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN-PSGFRIL 60
TL LLN +DG + + G ++I+ TN + LDPALLRPGR+D I + N S IL
Sbjct: 262 TLMELLNQLDG-FDNLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDIL 319
Query: 61 VSNYLGINDHNLFPEID-ELLTKL 83
+ GI H EID E + KL
Sbjct: 320 KIHAAGIAKHG---EIDYEAIVKL 340
>sp|P53549|PRS10_YEAST 26S protease subunit RPT4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPT4 PE=1 SV=4
Length = 437
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + + G +II+ TN + LDPALLRPGR+D + + N +G
Sbjct: 304 TLMELLTQMDG-FDNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNEAG 356
>sp|P32794|AFG2_YEAST ATPase family gene 2 protein OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=AFG2 PE=1 SV=1
Length = 780
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHM 49
L+ LLN IDG+ G +IV TN + +D ALLRPGR+D HI++
Sbjct: 636 VLTSLLNEIDGVEELKG--VVIVAATNRPDEIDAALLRPGRLDRHIYV 681
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRIL 60
++ LL +DG+ ++ + +++ TN N +DPAL RPGR D + + + F IL
Sbjct: 366 VVATLLTLMDGMGAA--GKVVVIAATNRPNSVDPALRRPGRFDQEVEIGIPDVDARFDIL 423
Query: 61 VSNY 64
+
Sbjct: 424 TKQF 427
>sp|Q9MAK9|PS10B_ARATH 26S protease regulatory subunit S10B homolog B OS=Arabidopsis
thaliana GN=RPT4B PE=2 SV=1
Length = 399
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN-PSGFRIL 60
TL LLN +DG + G ++I+ TN + LDPALLRPGR+D I + N S IL
Sbjct: 262 TLMELLNQLDG-FDQLGKVKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEIL 319
Query: 61 VSNYLGINDHNLFPEID-ELLTKL 83
+ GI H EID E + KL
Sbjct: 320 KIHASGIAKHG---EIDYEAIVKL 340
>sp|C6V4R9|FTSH_NEORI ATP-dependent zinc metalloprotease FtsH OS=Neorickettsia risticii
(strain Illinois) GN=ftsH PE=3 SV=1
Length = 636
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG ++ G II+ TN + LDPALLRPGR D I +S + +G
Sbjct: 279 TLNQLLVEMDGFEANEG--VIIIAATNRPDVLDPALLRPGRFDRQITISIPDIAG 331
>sp|B3DY14|FTSH2_METI4 ATP-dependent zinc metalloprotease FtsH 2 OS=Methylacidiphilum
infernorum (isolate V4) GN=ftsH2 PE=3 SV=1
Length = 641
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG+ S G I++ TN K+ LDPALLRPGR D + ++ + G
Sbjct: 275 TLNALLVEMDGIESQEG--VIVIAATNRKDVLDPALLRPGRFDREVRVNLPDIRG 327
>sp|A6VHR1|PAN_METM7 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1
Length = 407
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + S GD +II TN + LDPA+LRPGR D I +S + G
Sbjct: 271 TLMQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
>sp|A9A916|PAN_METM6 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1
Length = 407
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + S GD +II TN + LDPA+LRPGR D I +S + G
Sbjct: 271 TLMQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
>sp|Q6LWR0|PAN_METMP Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain S2 / LL) GN=pan PE=3 SV=1
Length = 407
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + S GD +II TN + LDPA+LRPGR D I +S + G
Sbjct: 271 TLMQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
>sp|A4G0S4|PAN_METM5 Proteasome-activating nucleotidase OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1
Length = 407
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LL +DG + S GD +II TN + LDPA+LRPGR D I +S + G
Sbjct: 271 TLMQLLAEMDG-FDSRGDVKIIA-ATNRPDILDPAILRPGRFDRIIEISMPDEDG 323
>sp|P54776|PRS6A_SOLLC 26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum
GN=TBP1 PE=2 SV=1
Length = 423
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRI 59
T+ LLN +DG S D+RI ++ TN + LDPAL+R GR+D I + RI
Sbjct: 293 TMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 349
Query: 60 LV--SNYLGINDHNLFPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEVA--------- 108
L S + +N F E+ +++ V +E + L+R TEV
Sbjct: 350 LQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGII 409
Query: 109 EVGNKQKAS 117
+V K+KAS
Sbjct: 410 QVQAKKKAS 418
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILV 61
TL+ LL +DG +S+ G I++ TN LDPALLRPGR D + + + +G ++
Sbjct: 297 TLNQLLTEMDG-FSAAGATVIVLAATNRPETLDPALLRPGRFDRQVLVDRPDLAGRLKIL 355
Query: 62 SNYLGINDHNLFPEIDELLTK---LMKSEVAEVALEGLVEFLKRKKTEVAEVGNKQKASR 118
Y + E+ + T+ +++A + E + + K+ V E ++ R
Sbjct: 356 EIYAKKIKLDKEVELKNIATRTPGFAGADLANLVNEAALLAARNKQDSVTEADFREAIER 415
Query: 119 EAEGDEKIGEFVRKTKKR 136
G EK + +K+
Sbjct: 416 VVAGLEKKSRVLSDKEKK 433
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG S + I++ TN + LDPALLRPGR D HI + + G
Sbjct: 283 TLNQLLVEMDGF--SVNEGIIVIAATNRPDILDPALLRPGRFDRHITVGIPDIKG 335
>sp|Q54PJ1|PRS10_DICDI 26S protease regulatory subunit 10B OS=Dictyostelium discoideum
GN=psmC6 PE=1 SV=1
Length = 393
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL LLN +DG + + +II+ TN + LDPALLRPGR+D I + N +G
Sbjct: 260 TLMELLNQMDG-FDTLSKVKIIM-ATNRPDVLDPALLRPGRLDRKIEIPLPNEAG 312
>sp|D2Q4G5|ARC_KRIFD Proteasome-associated ATPase OS=Kribbella flavida (strain DSM 17836
/ JCM 10339 / NBRC 14399) GN=arc PE=3 SV=1
Length = 578
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64
LL+ IDG+ G E +IV +N ++ +DPA+LRPGR+D+ I + + R + S Y
Sbjct: 364 LLSEIDGVE---GLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAARDIFSKY 420
Query: 65 L 65
L
Sbjct: 421 L 421
>sp|Q9SEI2|PS6AA_ARATH 26S protease regulatory subunit 6A homolog A OS=Arabidopsis
thaliana GN=RPT5A PE=2 SV=1
Length = 424
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRI 59
T+ LLN +DG S DERI ++ TN + LDPAL+R GR+D I + RI
Sbjct: 294 TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 350
Query: 60 LVSNYLGINDHNL--FPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEV---------A 108
L + +N H F E+ +++ V +E + L+R TEV
Sbjct: 351 LQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 410
Query: 109 EVGNKQKAS 117
+V K+KAS
Sbjct: 411 QVQAKKKAS 419
>sp|O23894|PRS6A_BRACM 26S protease regulatory subunit 6A homolog OS=Brassica campestris
GN=TBP1 PE=2 SV=1
Length = 424
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRI 59
T+ LLN +DG S DERI ++ TN + LDPAL+R GR+D I + RI
Sbjct: 294 TMLELLNQLDGFSS---DERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARI 350
Query: 60 LVSNYLGINDHNL--FPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEV---------A 108
L + +N H F E+ +++ V +E + L+R TEV
Sbjct: 351 LQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGII 410
Query: 109 EVGNKQKAS 117
+V K+KAS
Sbjct: 411 QVQAKKKAS 419
>sp|P78578|PRS6B_ASPNG 26S protease regulatory subunit 6B homolog OS=Aspergillus niger
GN=tbpA PE=3 SV=1
Length = 423
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65
LLN +DG S + ++ TN + LDPALLRPGR+D I R L+ + +
Sbjct: 293 LLNQMDGFEQSSNVK--VIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFSTI 350
Query: 66 GINDHNLFPEID 77
+ +L PE+D
Sbjct: 351 A-SKMSLSPEVD 361
>sp|P62335|PRS10_SPETR 26S protease regulatory subunit 10B OS=Spermophilus
tridecemlineatus GN=PSMC6 PE=2 SV=1
Length = 389
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
TL LLN +DG + R+ ++ TN + LDPALLRPGR+D IH+ N
Sbjct: 256 TLMELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPN 305
>sp|P62334|PRS10_MOUSE 26S protease regulatory subunit 10B OS=Mus musculus GN=Psmc6 PE=1
SV=1
Length = 389
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
TL LLN +DG + R+ ++ TN + LDPALLRPGR+D IH+ N
Sbjct: 256 TLMELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPN 305
>sp|P62333|PRS10_HUMAN 26S protease regulatory subunit 10B OS=Homo sapiens GN=PSMC6 PE=1
SV=1
Length = 389
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
TL LLN +DG + R+ ++ TN + LDPALLRPGR+D IH+ N
Sbjct: 256 TLMELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPN 305
>sp|P94304|FTSH_BACPE ATP-dependent zinc metalloprotease FtsH OS=Bacillus pseudofirmus
(strain OF4) GN=ftsH PE=3 SV=2
Length = 679
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56
TL+ LL +DG ++ G II+ TN + LDPALLRPGR D I ++ + +G
Sbjct: 288 TLNQLLVEMDGFSANEG--IIIIAATNRADILDPALLRPGRFDRQIQVNRPDVNG 340
>sp|Q2KIW6|PRS10_BOVIN 26S protease regulatory subunit 10B OS=Bos taurus GN=PSMC6 PE=2
SV=1
Length = 389
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53
TL LLN +DG + R+ ++ TN + LDPALLRPGR+D IH+ N
Sbjct: 256 TLMELLNQMDGFDTL---HRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPN 305
>sp|B2UE66|FTSH_RALPJ ATP-dependent zinc metalloprotease FtsH OS=Ralstonia pickettii
(strain 12J) GN=ftsH PE=3 SV=1
Length = 714
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 8/83 (9%)
Query: 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGF-RIL 60
TL+ LL +DG S+ G II+ TN LDPALLRPGR D H+ + + G +IL
Sbjct: 362 TLNQLLVEMDGFDSNKG--VIIMAATNRPEILDPALLRPGRFDRHVALDRPDLKGREQIL 419
Query: 61 VSNYLGINDHNLFPEIDELLTKL 83
+ G+ L PE+D LTKL
Sbjct: 420 KVHVKGV---VLAPEVD--LTKL 437
>sp|D2S6D9|ARC_GEOOG Proteasome-associated ATPase OS=Geodermatophilus obscurus (strain
ATCC 25078 / DSM 43160 / JCM 3152 / G-20) GN=arc PE=3
SV=1
Length = 593
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64
LL+ IDG+ G E +IV +N ++ +DPA+LRPGR+D+ I + + R + S Y
Sbjct: 380 LLSEIDGVE---GLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAARDIFSKY 436
Query: 65 L 65
L
Sbjct: 437 L 437
>sp|B1MAH2|ARC_MYCA9 Proteasome-associated ATPase OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=mpa PE=3 SV=1
Length = 602
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64
LL+ IDG+ G E +IV +N ++ +DPA+LRPGR+D+ I + + + + S Y
Sbjct: 389 LLSEIDGVE---GLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAESAQDIFSKY 445
Query: 65 LGIN 68
L ++
Sbjct: 446 LTVD 449
>sp|O04019|PS6AB_ARATH 26S protease regulatory subunit 6A homolog B OS=Arabidopsis
thaliana GN=RPT5B PE=1 SV=3
Length = 423
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 7/110 (6%)
Query: 2 TLSGLLNFIDGLWSSCGDERI-IVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRI 59
T+ LLN +DG S D+RI ++ TN + LDPAL+R GR+D I + RI
Sbjct: 293 TMLELLNQLDGFSS---DDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARGRI 349
Query: 60 LV--SNYLGINDHNLFPEIDELLTKLMKSEVAEVALEGLVEFLKRKKTEV 107
L S + +N F E+ +++ V +E + L+R TEV
Sbjct: 350 LQIHSRKMNVNADVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEV 399
>sp|C6WIC8|ARC_ACTMD Proteasome-associated ATPase OS=Actinosynnema mirum (strain ATCC
29888 / DSM 43827 / NBRC 14064 / IMRU 3971) GN=arc PE=3
SV=1
Length = 599
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 6 LLNFIDGLWSSCGDERIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64
LL+ IDG+ G E +IV +N ++ +DPA+LRPGR+D+ I + + G + + + Y
Sbjct: 386 LLSEIDGVE---GLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEGAKDIFAKY 442
Query: 65 L 65
L
Sbjct: 443 L 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,693,645
Number of Sequences: 539616
Number of extensions: 1989323
Number of successful extensions: 8827
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 8248
Number of HSP's gapped (non-prelim): 626
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)