Query 042776
Match_columns 147
No_of_seqs 166 out of 1802
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 09:20:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 99.9 4.8E-26 1E-30 195.7 11.1 111 1-111 319-442 (457)
2 COG1222 RPT1 ATP-dependent 26S 99.9 8.2E-24 1.8E-28 178.2 8.4 107 2-110 274-383 (406)
3 KOG0730 AAA+-type ATPase [Post 99.9 6.4E-22 1.4E-26 176.1 8.8 101 3-105 555-658 (693)
4 KOG0734 AAA+-type ATPase conta 99.8 2.2E-21 4.9E-26 170.2 6.3 89 2-92 423-514 (752)
5 KOG0733 Nuclear AAA ATPase (VC 99.8 3.1E-20 6.8E-25 164.8 9.2 101 3-105 632-739 (802)
6 KOG0733 Nuclear AAA ATPase (VC 99.8 6.5E-19 1.4E-23 156.5 9.2 103 3-105 310-417 (802)
7 COG0465 HflB ATP-dependent Zn 99.8 3.9E-19 8.5E-24 158.3 7.4 104 2-107 272-378 (596)
8 KOG0731 AAA+-type ATPase conta 99.8 5.7E-19 1.2E-23 160.2 7.9 103 2-106 434-540 (774)
9 KOG0726 26S proteasome regulat 99.8 3.3E-19 7.2E-24 148.1 4.6 107 2-110 308-417 (440)
10 KOG0652 26S proteasome regulat 99.7 1.2E-18 2.6E-23 143.3 5.9 107 2-110 294-403 (424)
11 KOG0736 Peroxisome assembly fa 99.7 5.3E-18 1.2E-22 153.5 9.6 103 3-105 794-901 (953)
12 KOG0728 26S proteasome regulat 99.7 3.5E-18 7.5E-23 140.0 7.4 107 2-110 270-379 (404)
13 KOG0729 26S proteasome regulat 99.7 5E-18 1.1E-22 140.1 3.7 107 2-110 300-409 (435)
14 KOG0727 26S proteasome regulat 99.7 3.5E-17 7.6E-22 134.3 7.3 100 3-104 279-381 (408)
15 KOG0735 AAA+-type ATPase [Post 99.7 6.1E-17 1.3E-21 145.9 8.8 99 3-103 788-889 (952)
16 COG0464 SpoVK ATPases of the A 99.7 8.9E-17 1.9E-21 140.0 9.0 100 3-104 363-467 (494)
17 TIGR01243 CDC48 AAA family ATP 99.7 1E-16 2.2E-21 146.0 9.4 100 3-104 575-677 (733)
18 KOG0738 AAA+-type ATPase [Post 99.7 5.3E-17 1.2E-21 138.6 6.9 99 4-105 334-438 (491)
19 KOG0737 AAA+-type ATPase [Post 99.7 5.6E-17 1.2E-21 137.1 6.8 102 4-107 215-319 (386)
20 PRK10733 hflB ATP-dependent me 99.7 9.9E-17 2.1E-21 144.6 8.1 100 2-103 274-376 (644)
21 CHL00206 ycf2 Ycf2; Provisiona 99.7 9.3E-17 2E-21 155.6 8.3 105 1-105 1752-1863(2281)
22 PTZ00454 26S protease regulato 99.7 2.7E-16 5.8E-21 135.0 8.9 100 3-104 269-371 (398)
23 TIGR01241 FtsH_fam ATP-depende 99.6 4.1E-16 8.9E-21 136.4 8.8 98 2-101 177-277 (495)
24 KOG0732 AAA+-type ATPase conta 99.6 5.8E-16 1.3E-20 144.2 8.7 105 3-109 391-499 (1080)
25 TIGR03689 pup_AAA proteasome A 99.6 8E-16 1.7E-20 135.6 8.7 63 3-67 318-380 (512)
26 PTZ00361 26 proteosome regulat 99.6 1.4E-15 3E-20 132.0 8.0 101 2-104 306-409 (438)
27 PRK03992 proteasome-activating 99.6 2.5E-15 5.5E-20 128.2 8.5 100 2-103 254-356 (389)
28 KOG0741 AAA+-type ATPase [Post 99.6 5.2E-16 1.1E-20 136.6 2.5 98 3-107 354-458 (744)
29 PLN00020 ribulose bisphosphate 99.6 1.4E-14 3E-19 123.7 10.3 81 3-86 241-331 (413)
30 CHL00176 ftsH cell division pr 99.6 7.5E-15 1.6E-19 132.5 8.2 97 2-100 305-404 (638)
31 CHL00195 ycf46 Ycf46; Provisio 99.6 1E-14 2.3E-19 128.1 8.1 96 3-102 347-447 (489)
32 KOG0739 AAA+-type ATPase [Post 99.5 1.9E-15 4E-20 126.2 2.9 99 4-105 254-356 (439)
33 COG1223 Predicted ATPase (AAA+ 99.5 1.6E-14 3.5E-19 118.7 8.3 93 2-98 238-333 (368)
34 TIGR01242 26Sp45 26S proteasom 99.5 5.9E-14 1.3E-18 118.3 9.0 100 2-103 245-347 (364)
35 KOG0651 26S proteasome regulat 99.5 9.7E-15 2.1E-19 122.0 2.5 91 2-94 255-348 (388)
36 KOG0730 AAA+-type ATPase [Post 99.5 1.6E-13 3.4E-18 122.9 9.4 97 3-102 305-404 (693)
37 KOG0740 AAA+-type ATPase [Post 99.4 1.6E-13 3.5E-18 118.5 6.2 102 3-106 273-378 (428)
38 TIGR01243 CDC48 AAA family ATP 99.3 6.4E-12 1.4E-16 114.7 9.0 98 3-102 299-399 (733)
39 PF00004 AAA: ATPase family as 98.5 2.2E-07 4.8E-12 65.7 4.3 47 3-51 86-132 (132)
40 COG0464 SpoVK ATPases of the A 98.4 1.2E-06 2.5E-11 76.7 8.9 98 3-103 104-204 (494)
41 KOG0742 AAA+-type ATPase [Post 98.0 3.5E-06 7.5E-11 73.6 3.6 46 19-66 484-529 (630)
42 KOG0744 AAA+-type ATPase [Post 97.9 1.2E-05 2.7E-10 68.3 3.5 59 3-65 282-340 (423)
43 TIGR00763 lon ATP-dependent pr 97.3 0.0011 2.4E-08 61.5 8.6 44 19-65 462-505 (775)
44 CHL00181 cbbX CbbX; Provisiona 97.3 0.0013 2.8E-08 54.3 7.9 65 3-73 148-217 (287)
45 TIGR02881 spore_V_K stage V sp 97.1 0.0022 4.7E-08 51.7 7.0 67 3-75 130-201 (261)
46 PRK11034 clpA ATP-dependent Cl 97.0 0.00043 9.2E-09 64.3 2.8 44 19-65 314-362 (758)
47 TIGR02880 cbbX_cfxQ probable R 96.9 0.0076 1.6E-07 49.6 8.8 63 3-71 147-214 (284)
48 PRK00080 ruvB Holliday junctio 96.3 0.018 3.9E-07 47.9 7.3 52 21-74 151-202 (328)
49 TIGR02639 ClpA ATP-dependent C 96.1 0.0097 2.1E-07 55.0 5.2 44 19-65 310-358 (731)
50 TIGR00635 ruvB Holliday juncti 96.1 0.018 3.8E-07 47.0 6.2 60 20-81 129-189 (305)
51 TIGR03345 VI_ClpV1 type VI sec 96.0 0.016 3.5E-07 54.6 6.2 44 19-65 315-363 (852)
52 TIGR00362 DnaA chromosomal rep 95.9 0.029 6.3E-07 48.0 6.9 74 4-81 219-298 (405)
53 KOG0736 Peroxisome assembly fa 95.4 0.066 1.4E-06 50.3 7.7 61 19-81 532-592 (953)
54 TIGR03346 chaperone_ClpB ATP-d 95.4 0.071 1.5E-06 50.2 8.1 44 19-65 301-349 (852)
55 COG0714 MoxR-like ATPases [Gen 95.3 0.14 3.1E-06 42.6 8.9 60 3-66 129-204 (329)
56 PRK00149 dnaA chromosomal repl 95.3 0.047 1E-06 47.5 6.2 69 4-76 231-304 (450)
57 TIGR02640 gas_vesic_GvpN gas v 95.3 0.06 1.3E-06 43.6 6.4 83 20-106 151-239 (262)
58 TIGR02397 dnaX_nterm DNA polym 95.2 0.064 1.4E-06 44.4 6.4 61 3-70 134-194 (355)
59 PRK10865 protein disaggregatio 94.9 0.023 5E-07 53.6 3.4 45 19-66 306-355 (857)
60 PRK07940 DNA polymerase III su 94.9 0.22 4.7E-06 43.2 9.1 56 4-66 135-190 (394)
61 PHA02544 44 clamp loader, smal 94.8 0.055 1.2E-06 44.2 5.1 52 6-64 121-172 (316)
62 TIGR02902 spore_lonB ATP-depen 94.6 0.082 1.8E-06 47.3 5.8 51 20-73 234-284 (531)
63 TIGR02928 orc1/cdc6 family rep 94.4 0.55 1.2E-05 39.0 10.1 46 19-66 164-213 (365)
64 PRK14962 DNA polymerase III su 94.1 0.26 5.6E-06 43.7 7.9 59 4-69 135-193 (472)
65 PRK06893 DNA replication initi 94.1 0.1 2.2E-06 41.3 5.0 73 5-79 112-188 (229)
66 KOG0735 AAA+-type ATPase [Post 94.0 0.22 4.8E-06 46.7 7.4 64 4-68 525-589 (952)
67 TIGR00678 holB DNA polymerase 94.0 0.12 2.6E-06 39.3 5.0 55 3-64 113-167 (188)
68 PRK10787 DNA-binding ATP-depen 93.8 0.14 3.1E-06 48.0 6.1 44 19-66 464-507 (784)
69 PRK12402 replication factor C 93.1 1.1 2.3E-05 36.7 9.6 70 5-81 144-214 (337)
70 PRK05563 DNA polymerase III su 93.1 0.42 9.1E-06 43.1 7.6 60 3-69 136-195 (559)
71 PRK06964 DNA polymerase III su 93.0 0.21 4.6E-06 42.5 5.4 55 3-64 149-203 (342)
72 PF05673 DUF815: Protein of un 92.9 1.3 2.9E-05 36.3 9.7 78 4-81 125-224 (249)
73 PRK13407 bchI magnesium chelat 92.9 0.22 4.7E-06 42.3 5.2 46 19-66 170-217 (334)
74 PRK14956 DNA polymerase III su 92.7 0.48 1E-05 42.3 7.2 61 3-70 138-198 (484)
75 PRK12422 chromosomal replicati 92.7 0.28 6E-06 43.1 5.7 73 5-81 223-301 (445)
76 PRK07133 DNA polymerase III su 92.3 0.51 1.1E-05 44.1 7.3 59 3-68 135-193 (725)
77 PRK14961 DNA polymerase III su 92.3 0.99 2.1E-05 38.2 8.5 61 3-70 136-196 (363)
78 PRK14970 DNA polymerase III su 91.9 0.99 2.1E-05 37.9 8.1 61 3-70 125-185 (367)
79 TIGR02030 BchI-ChlI magnesium 91.8 0.28 6.1E-06 41.6 4.6 46 19-66 173-220 (337)
80 PRK14953 DNA polymerase III su 91.8 0.66 1.4E-05 41.2 7.1 60 4-70 137-196 (486)
81 PRK06645 DNA polymerase III su 91.5 0.82 1.8E-05 41.0 7.4 61 3-70 145-205 (507)
82 PRK00411 cdc6 cell division co 91.4 2.3 4.9E-05 35.8 9.7 58 4-66 160-221 (394)
83 PRK14963 DNA polymerase III su 91.3 1.3 2.8E-05 39.6 8.4 61 3-70 133-193 (504)
84 PRK07003 DNA polymerase III su 90.9 1.3 2.7E-05 42.0 8.2 61 3-70 136-196 (830)
85 PTZ00112 origin recognition co 90.9 1.3 2.8E-05 42.9 8.3 81 19-101 901-987 (1164)
86 PRK14088 dnaA chromosomal repl 90.7 0.7 1.5E-05 40.4 6.1 71 5-79 215-290 (440)
87 CHL00081 chlI Mg-protoporyphyr 90.6 0.46 1E-05 40.6 4.8 45 19-65 186-232 (350)
88 PRK14086 dnaA chromosomal repl 90.3 1.3 2.8E-05 40.7 7.6 72 4-80 397-474 (617)
89 TIGR03420 DnaA_homol_Hda DnaA 90.2 0.99 2.1E-05 34.7 6.0 74 4-81 110-189 (226)
90 PRK09087 hypothetical protein; 90.0 0.77 1.7E-05 36.5 5.3 69 4-76 104-177 (226)
91 PRK05896 DNA polymerase III su 89.8 0.9 1.9E-05 41.7 6.2 59 4-69 137-195 (605)
92 TIGR02031 BchD-ChlD magnesium 89.8 0.67 1.5E-05 42.1 5.4 44 20-65 127-174 (589)
93 PRK04195 replication factor C 89.8 2 4.3E-05 37.8 8.2 72 21-96 131-203 (482)
94 PRK08727 hypothetical protein; 89.6 0.71 1.5E-05 36.7 4.8 72 6-81 115-192 (233)
95 PRK14959 DNA polymerase III su 89.5 1.1 2.4E-05 41.2 6.5 60 3-69 136-195 (624)
96 PRK00440 rfc replication facto 89.1 2.2 4.7E-05 34.5 7.5 69 5-80 121-190 (319)
97 TIGR02903 spore_lon_C ATP-depe 89.1 2 4.2E-05 39.3 7.9 59 21-82 324-383 (615)
98 PRK13342 recombination factor 89.0 3.4 7.3E-05 35.6 8.9 45 20-67 120-166 (413)
99 PRK08084 DNA replication initi 88.5 0.96 2.1E-05 36.0 4.9 57 21-79 133-194 (235)
100 PRK11034 clpA ATP-dependent Cl 88.4 1.1 2.4E-05 42.0 5.9 62 3-66 574-667 (758)
101 CHL00095 clpC Clp protease ATP 88.2 1.6 3.4E-05 41.1 6.8 42 19-63 306-352 (821)
102 PRK06305 DNA polymerase III su 88.2 2.3 5E-05 37.4 7.4 58 4-68 139-196 (451)
103 PRK09112 DNA polymerase III su 88.1 3.8 8.3E-05 34.9 8.6 55 3-64 158-212 (351)
104 PRK12323 DNA polymerase III su 88.1 0.99 2.1E-05 42.0 5.2 60 3-69 141-200 (700)
105 smart00350 MCM minichromosome 87.5 1.4 2.9E-05 39.3 5.7 45 19-65 342-400 (509)
106 PRK06620 hypothetical protein; 87.5 1.6 3.5E-05 34.4 5.6 70 6-80 102-175 (214)
107 PRK08903 DnaA regulatory inact 87.3 4.3 9.3E-05 31.5 7.9 73 5-81 109-187 (227)
108 PRK06647 DNA polymerase III su 87.2 2.3 5E-05 38.6 7.0 59 3-68 136-194 (563)
109 PF00308 Bac_DnaA: Bacterial d 87.0 2.1 4.6E-05 33.8 6.0 74 4-81 117-195 (219)
110 cd00009 AAA The AAA+ (ATPases 87.0 1.1 2.5E-05 30.6 4.0 45 4-50 102-150 (151)
111 PRK05642 DNA replication initi 86.3 1.9 4.2E-05 34.2 5.5 57 5-65 118-179 (234)
112 PRK05707 DNA polymerase III su 86.0 1.8 4E-05 36.4 5.5 56 3-65 123-178 (328)
113 PRK11331 5-methylcytosine-spec 85.8 1.1 2.3E-05 39.9 4.0 29 19-50 324-356 (459)
114 PLN03025 replication factor C 85.6 3.3 7.2E-05 34.3 6.7 71 21-96 130-201 (319)
115 PRK07764 DNA polymerase III su 85.5 3.9 8.4E-05 38.9 7.8 60 3-69 137-196 (824)
116 PRK14965 DNA polymerase III su 85.1 2 4.3E-05 39.0 5.5 60 3-69 136-195 (576)
117 PRK07471 DNA polymerase III su 84.9 2.7 5.9E-05 36.0 6.0 57 3-66 158-214 (365)
118 TIGR01650 PD_CobS cobaltochela 84.8 6.2 0.00013 33.6 8.1 45 19-65 177-233 (327)
119 PRK14952 DNA polymerase III su 84.6 4.1 8.9E-05 37.2 7.3 61 3-70 135-195 (584)
120 PRK14948 DNA polymerase III su 84.5 4.6 9.9E-05 37.1 7.6 58 3-67 138-195 (620)
121 PRK07994 DNA polymerase III su 84.4 5 0.00011 37.2 7.8 59 3-68 136-194 (647)
122 PRK14964 DNA polymerase III su 83.5 3.4 7.4E-05 37.0 6.2 61 3-70 133-193 (491)
123 PRK09111 DNA polymerase III su 83.1 5.7 0.00012 36.4 7.6 62 3-71 149-210 (598)
124 PRK08451 DNA polymerase III su 82.6 6.3 0.00014 35.7 7.6 61 3-70 134-194 (535)
125 PRK08691 DNA polymerase III su 82.5 3.3 7.1E-05 38.7 5.9 61 3-70 136-196 (709)
126 PRK14960 DNA polymerase III su 82.1 4.2 9E-05 38.0 6.4 59 3-68 135-193 (702)
127 PRK14949 DNA polymerase III su 82.0 6.4 0.00014 38.0 7.7 60 3-69 136-195 (944)
128 PRK14969 DNA polymerase III su 81.3 3.3 7.2E-05 37.1 5.4 59 3-68 136-194 (527)
129 PRK14951 DNA polymerase III su 81.0 6.9 0.00015 36.0 7.4 61 3-70 141-201 (618)
130 PRK14087 dnaA chromosomal repl 80.7 4.5 9.7E-05 35.6 5.9 60 4-68 226-291 (450)
131 PRK05564 DNA polymerase III su 80.5 23 0.0005 29.1 9.8 55 4-65 111-165 (313)
132 TIGR02639 ClpA ATP-dependent C 80.4 3.9 8.4E-05 38.0 5.6 62 3-66 570-663 (731)
133 COG0466 Lon ATP-dependent Lon 79.3 11 0.00023 35.7 7.9 43 20-65 466-508 (782)
134 PRK14957 DNA polymerase III su 79.1 9.7 0.00021 34.6 7.6 59 3-68 136-194 (546)
135 PRK14950 DNA polymerase III su 77.8 9.1 0.0002 34.7 7.1 60 3-69 137-196 (585)
136 PRK04132 replication factor C 76.3 15 0.00032 35.2 8.2 57 4-67 648-704 (846)
137 PRK14971 DNA polymerase III su 75.7 13 0.00029 34.0 7.6 60 3-69 138-197 (614)
138 PRK14958 DNA polymerase III su 75.6 8 0.00017 34.6 6.0 61 3-70 136-196 (509)
139 COG0593 DnaA ATPase involved i 72.8 20 0.00044 31.4 7.7 93 6-102 197-296 (408)
140 smart00382 AAA ATPases associa 72.6 4.4 9.6E-05 27.1 3.0 34 19-53 115-148 (148)
141 PRK14954 DNA polymerase III su 71.1 20 0.00043 33.1 7.5 58 4-68 145-202 (620)
142 TIGR02442 Cob-chelat-sub cobal 70.7 9.9 0.00021 34.8 5.5 43 20-64 169-213 (633)
143 KOG2004 Mitochondrial ATP-depe 70.0 12 0.00027 35.5 5.9 44 19-65 553-596 (906)
144 COG2607 Predicted ATPase (AAA+ 68.7 22 0.00047 29.7 6.5 67 5-71 159-245 (287)
145 PRK13341 recombination factor 67.9 22 0.00047 33.4 7.2 45 19-66 136-182 (725)
146 TIGR03346 chaperone_ClpB ATP-d 65.9 9 0.0002 36.3 4.4 46 19-66 707-777 (852)
147 PRK13531 regulatory ATPase Rav 65.6 13 0.00029 33.4 5.1 60 3-64 124-193 (498)
148 PRK07399 DNA polymerase III su 65.3 57 0.0012 27.3 8.6 55 4-66 142-196 (314)
149 PRK14955 DNA polymerase III su 64.9 13 0.00029 31.8 4.9 58 4-68 145-202 (397)
150 PRK08699 DNA polymerase III su 63.6 8.4 0.00018 32.4 3.3 54 3-63 130-183 (325)
151 PF05496 RuvB_N: Holliday junc 62.7 15 0.00031 30.0 4.4 49 21-71 150-198 (233)
152 PRK06090 DNA polymerase III su 61.4 21 0.00045 30.2 5.3 53 4-63 126-178 (319)
153 PRK10865 protein disaggregatio 61.1 11 0.00025 35.8 4.1 45 20-66 711-780 (857)
154 smart00763 AAA_PrkA PrkA AAA d 61.1 23 0.00049 30.6 5.6 45 21-68 278-330 (361)
155 PLN03210 Resistant to P. syrin 60.5 55 0.0012 32.1 8.7 57 19-81 323-379 (1153)
156 PHA02244 ATPase-like protein 58.9 15 0.00033 32.0 4.2 34 19-55 220-264 (383)
157 PRK08058 DNA polymerase III su 52.6 30 0.00065 28.9 4.9 53 4-63 128-180 (329)
158 PRK07993 DNA polymerase III su 52.1 29 0.00064 29.3 4.8 54 4-64 126-179 (334)
159 TIGR00764 lon_rel lon-related 51.5 27 0.00059 32.0 4.8 60 20-81 268-341 (608)
160 PRK14700 recombination factor 51.4 1.1E+02 0.0023 25.9 7.9 77 19-100 7-92 (300)
161 CHL00095 clpC Clp protease ATP 51.4 41 0.00089 31.8 6.1 26 41-66 708-733 (821)
162 TIGR03345 VI_ClpV1 type VI sec 49.2 42 0.00091 32.0 5.8 31 33-66 751-781 (852)
163 PRK08769 DNA polymerase III su 47.4 42 0.00091 28.3 5.0 54 3-63 130-183 (319)
164 TIGR00382 clpX endopeptidase C 46.1 75 0.0016 27.9 6.5 23 41-63 307-329 (413)
165 PRK06871 DNA polymerase III su 42.7 61 0.0013 27.4 5.3 55 3-64 124-178 (325)
166 COG2812 DnaX DNA polymerase II 41.9 1.8E+02 0.0039 26.4 8.3 49 19-70 148-196 (515)
167 CHL00195 ycf46 Ycf46; Provisio 41.3 1.1E+02 0.0023 27.4 6.8 58 20-82 115-173 (489)
168 PRK14759 potassium-transportin 39.5 10 0.00022 21.1 0.1 9 35-43 21-29 (29)
169 PF00493 MCM: MCM2/3/5 family 38.8 54 0.0012 27.5 4.4 44 21-66 165-222 (331)
170 PRK09862 putative ATP-dependen 37.3 36 0.00078 30.6 3.2 35 19-55 336-391 (506)
171 COG0542 clpA ATP-binding subun 37.2 81 0.0018 30.1 5.6 62 3-66 610-706 (786)
172 COG2255 RuvB Holliday junction 36.9 1.8E+02 0.004 24.8 7.1 46 21-68 152-197 (332)
173 PRK13406 bchD magnesium chelat 36.0 59 0.0013 29.8 4.4 53 2-56 109-173 (584)
174 KOG2227 Pre-initiation complex 34.2 1.8E+02 0.0039 26.5 7.0 91 11-101 280-377 (529)
175 COG1239 ChlI Mg-chelatase subu 33.5 1.1E+02 0.0024 27.1 5.5 54 10-65 177-232 (423)
176 PRK07132 DNA polymerase III su 33.1 1.1E+02 0.0023 25.6 5.2 53 4-63 108-160 (299)
177 PRK07276 DNA polymerase III su 32.8 1.1E+02 0.0023 25.5 5.2 52 3-62 121-172 (290)
178 cd05212 NAD_bind_m-THF_DH_Cycl 32.5 35 0.00077 25.3 2.0 23 21-43 73-95 (140)
179 PRK05342 clpX ATP-dependent pr 31.2 2E+02 0.0044 25.0 6.8 22 41-62 301-322 (412)
180 PRK08485 DNA polymerase III su 30.5 2.8E+02 0.0062 22.2 8.2 66 3-75 71-148 (206)
181 COG3378 Phage associated DNA p 27.7 1.2E+02 0.0026 27.5 4.9 42 20-64 326-372 (517)
182 KOG0673 Thymidylate synthase [ 26.7 65 0.0014 26.7 2.7 47 3-50 138-184 (293)
183 PF09604 Potass_KdpF: F subuni 26.0 23 0.0005 18.9 0.1 8 36-43 18-25 (25)
184 PF12775 AAA_7: P-loop contain 25.5 55 0.0012 26.7 2.2 43 20-65 148-193 (272)
185 COG1220 HslU ATP-dependent pro 25.5 3.4E+02 0.0075 24.0 7.0 41 19-61 301-345 (444)
186 KOG1942 DNA helicase, TBP-inte 24.0 3E+02 0.0065 24.0 6.3 49 20-68 325-383 (456)
187 PF12846 AAA_10: AAA-like doma 21.5 65 0.0014 25.1 1.9 46 19-68 252-302 (304)
188 TIGR03283 thy_syn_methano thym 21.4 1.2E+02 0.0027 23.7 3.4 51 3-53 92-152 (199)
189 PRK06581 DNA polymerase III su 21.2 3.7E+02 0.0079 22.4 6.2 58 3-67 106-163 (263)
190 PF03843 Slp: Outer membrane l 21.1 91 0.002 23.6 2.5 23 18-43 74-96 (160)
191 PF13438 DUF4113: Domain of un 21.1 61 0.0013 19.9 1.3 26 4-29 2-27 (52)
192 COG1029 FwdB Formylmethanofura 21.1 3.9E+02 0.0084 23.6 6.5 67 19-85 141-218 (429)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.8e-26 Score=195.72 Aligned_cols=111 Identities=68% Similarity=1.109 Sum_probs=102.0
Q ss_pred CcHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC-CCCChHHHHHH
Q 042776 1 LTLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN-DHNLFPEIDEL 79 (147)
Q Consensus 1 ~tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~-~~~~~~~i~~l 79 (147)
||+|+||+++||+||+||+.+|||+||||++.|||||+||||+|++|+|++|+.++.+.|+..||+.. +|.++.+|+++
T Consensus 319 VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l 398 (457)
T KOG0743|consen 319 VTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERL 398 (457)
T ss_pred eehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999997 59999999988
Q ss_pred HH-----------HHhccc-hHHHHHHHHHHHHHHhhHHHHhhh
Q 042776 80 LT-----------KLMKSE-VAEVALEGLVEFLKRKKTEVAEVG 111 (147)
Q Consensus 80 ~~-----------~l~~~~-~~~~al~~~~~~l~~~~~~~~~~~ 111 (147)
.. .|+-.+ +++.|+++++..+++++.+.++..
T Consensus 399 ~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~~~~~~~~ 442 (457)
T KOG0743|consen 399 IEETEVTPAQVAEELMKNKNDADVALKGLVEALESKKEKRNKDD 442 (457)
T ss_pred hhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhhhhhccch
Confidence 66 555555 899999999999999887666553
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=8.2e-24 Score=178.23 Aligned_cols=107 Identities=23% Similarity=0.320 Sum_probs=94.1
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC---CChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH---NLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~ 78 (147)
|+-|||++|||+... ++|-||||||||+.|||||+|||||||+|+|++||.++|..||+.|.+.... .++..++.
T Consensus 274 TmleLL~qlDGFD~~--~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 274 TMLELLNQLDGFDPR--GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred HHHHHHHhccCCCCC--CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 678999999999988 8899999999999999999999999999999999999999999999876644 44555556
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhhHHHHhh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKKTEVAEV 110 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~~~~~~~ 110 (147)
++++++|.+....|.++=+-+++..+.....+
T Consensus 352 ~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~ 383 (406)
T COG1222 352 LTEGFSGADLKAICTEAGMFAIRERRDEVTME 383 (406)
T ss_pred hcCCCchHHHHHHHHHHhHHHHHhccCeecHH
Confidence 66699999999999999999999887655444
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=6.4e-22 Score=176.12 Aligned_cols=101 Identities=26% Similarity=0.321 Sum_probs=90.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+|+||++|||+... .+|+||||||||+.||+||+||||||+.|||++||.++|.+||+.++...+.....++..|+.
T Consensus 555 lsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 555 LSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQA 632 (693)
T ss_pred HHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 79999999999887 789999999999999999999999999999999999999999999998776665555555555
Q ss_pred --HHhccchHHHHHHHHHHHHHHhhH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
+|+|.+....|-++...|+++.-.
T Consensus 633 T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred hccCChHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987654
No 4
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.2e-21 Score=170.25 Aligned_cols=89 Identities=26% Similarity=0.340 Sum_probs=79.6
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
|+||||.+|||+..+ ++||||+|||+|+.||+||+||||||++|.+++||..+|.+||..|+....+....+..-+|.
T Consensus 423 TlNQLLvEmDGF~qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiAR 500 (752)
T KOG0734|consen 423 TLNQLLVEMDGFKQN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIAR 500 (752)
T ss_pred HHHHHHHHhcCcCcC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhcc
Confidence 799999999999887 899999999999999999999999999999999999999999999999887776666666666
Q ss_pred ---HHhccchHHHH
Q 042776 82 ---KLMKSEVAEVA 92 (147)
Q Consensus 82 ---~l~~~~~~~~a 92 (147)
+|.|.|.....
T Consensus 501 GT~GFsGAdLaNlV 514 (752)
T KOG0734|consen 501 GTPGFSGADLANLV 514 (752)
T ss_pred CCCCCchHHHHHHH
Confidence 77777776533
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=3.1e-20 Score=164.82 Aligned_cols=101 Identities=22% Similarity=0.299 Sum_probs=88.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC--CCCCCChHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG--INDHNLFPEIDELL 80 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~--~~~~~~~~~i~~l~ 80 (147)
|||||++|||+... .+|+||+|||||+.+|||++||||||+.+|+++|+.++|..||+.+.. ..+.....+++.++
T Consensus 632 vNqLLtElDGl~~R--~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 632 VNQLLTELDGLEER--RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred HHHHHHHhcccccc--cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 79999999999988 889999999999999999999999999999999999999999999987 33433444455555
Q ss_pred H-----HHhccchHHHHHHHHHHHHHHhhH
Q 042776 81 T-----KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 81 ~-----~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
. +|.|.|.+..+-++.+.+|++.-.
T Consensus 710 ~~~~c~gftGADLaaLvreAsi~AL~~~~~ 739 (802)
T KOG0733|consen 710 RNTKCEGFTGADLAALVREASILALRESLF 739 (802)
T ss_pred hcccccCCchhhHHHHHHHHHHHHHHHHHh
Confidence 4 899999999999999998887665
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.5e-19 Score=156.51 Aligned_cols=103 Identities=22% Similarity=0.277 Sum_probs=87.6
Q ss_pred HHHHHHHhhCCCCC--CCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC---CCChHHHH
Q 042776 3 LSGLLNFIDGLWSS--CGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND---HNLFPEID 77 (147)
Q Consensus 3 v~~lL~~lDgl~~~--~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~---~~~~~~i~ 77 (147)
|+|||+.||++... .|+.|+||+|||||+.|||||+|+||||+.|.++.|+..+|..||+.....-. ..++..++
T Consensus 310 VaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802)
T KOG0733|consen 310 VAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLA 389 (802)
T ss_pred HHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHH
Confidence 78999999999643 35789999999999999999999999999999999999999999998876443 44455566
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhH
Q 042776 78 ELLTKLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 78 ~l~~~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
.++++|+|.|....|.++..-+++..-.
T Consensus 390 ~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 390 KLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred hcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 6666999999999999888888877544
No 7
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=3.9e-19 Score=158.27 Aligned_cols=104 Identities=27% Similarity=0.347 Sum_probs=86.9
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC---hHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL---FPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~---~~~i~~ 78 (147)
|+||||.+|||+.++ ++|+||+|||||+-|||||+||||||+.|.+++||..+|++|++.|....+... ...+++
T Consensus 272 TLNQlLvEmDGF~~~--~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr 349 (596)
T COG0465 272 TLNQLLVEMDGFGGN--EGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIAR 349 (596)
T ss_pred HHHHHHhhhccCCCC--CceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhh
Confidence 799999999999966 889999999999999999999999999999999999999999999887664443 334555
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhhHHH
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKKTEV 107 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~~~~ 107 (147)
.++++++.+....+.++.+-+.++.+..-
T Consensus 350 ~tpGfsGAdL~nl~NEAal~aar~n~~~i 378 (596)
T COG0465 350 GTPGFSGADLANLLNEAALLAARRNKKEI 378 (596)
T ss_pred hCCCcccchHhhhHHHHHHHHHHhcCeeE
Confidence 55588888888777777777776665433
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.7e-19 Score=160.24 Aligned_cols=103 Identities=27% Similarity=0.367 Sum_probs=83.7
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELL 80 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~ 80 (147)
|+||||.+|||+.++ .+|||+++||||+.||+||+||||||++|++++|+..+|.+||+.|+...... ...++..++
T Consensus 434 tlnQll~emDgf~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 434 TLNQLLVEMDGFETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred HHHHHHHHhcCCcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 799999999999888 88999999999999999999999999999999999999999999999766442 334444444
Q ss_pred H---HHhccchHHHHHHHHHHHHHHhhHH
Q 042776 81 T---KLMKSEVAEVALEGLVEFLKRKKTE 106 (147)
Q Consensus 81 ~---~l~~~~~~~~al~~~~~~l~~~~~~ 106 (147)
. ++.|.+....|-++.+.+.++....
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r~~~~~ 540 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAARKGLRE 540 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHHhccCc
Confidence 4 6667777666666666666554443
No 9
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=3.3e-19 Score=148.15 Aligned_cols=107 Identities=24% Similarity=0.349 Sum_probs=94.1
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
|+-+||+++||+.+. +.|-||+|||+.+.|||||+||||+|++|+|++||...++.||..|...........++.++.
T Consensus 308 tmLELLNQldGFdsr--gDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~ 385 (440)
T KOG0726|consen 308 TMLELLNQLDGFDSR--GDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIM 385 (440)
T ss_pred HHHHHHHhccCcccc--CCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhh
Confidence 567999999999998 789999999999999999999999999999999999999999998887665555566677766
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhhHHHHhh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKKTEVAEV 110 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~~~~~~~ 110 (147)
.++|.+....|-++=+-+++++++..-.+
T Consensus 386 ~kddlSGAdIkAictEaGllAlRerRm~vt~~ 417 (440)
T KOG0726|consen 386 TKDDLSGADIKAICTEAGLLALRERRMKVTME 417 (440)
T ss_pred cccccccccHHHHHHHHhHHHHHHHHhhccHH
Confidence 88999999999999999998888755443
No 10
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.2e-18 Score=143.35 Aligned_cols=107 Identities=29% Similarity=0.338 Sum_probs=89.1
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC---ChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN---LFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~---~~~~i~~ 78 (147)
|+-+||+++||+.+. +.+-||+||||.+.|||||+|+||+|++|+||+|+.++|..|++.|....... .++++++
T Consensus 294 TMLELLNQLDGFss~--~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaR 371 (424)
T KOG0652|consen 294 TMLELLNQLDGFSSD--DRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELAR 371 (424)
T ss_pred HHHHHHHhhcCCCCc--cceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhh
Confidence 577999999999987 88999999999999999999999999999999999999999999998766444 4455555
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhhHHHHhh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKKTEVAEV 110 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~~~~~~~ 110 (147)
.+..|-|..-...|+++-+.+++....+..-+
T Consensus 372 sTddFNGAQcKAVcVEAGMiALRr~atev~he 403 (424)
T KOG0652|consen 372 STDDFNGAQCKAVCVEAGMIALRRGATEVTHE 403 (424)
T ss_pred cccccCchhheeeehhhhHHHHhcccccccHH
Confidence 55577777777888888888887666544433
No 11
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=5.3e-18 Score=153.49 Aligned_cols=103 Identities=23% Similarity=0.348 Sum_probs=78.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHH-HHHHHHHHh---CCCCCCChHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG-FRILVSNYL---GINDHNLFPEIDE 78 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~-r~~il~~~l---~~~~~~~~~~i~~ 78 (147)
|+|||.+|||+...+..+|+||+|||||+.|||||+||||||+.+|++.++..+ +..+|+... ..++..+..++++
T Consensus 794 VSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk 873 (953)
T KOG0736|consen 794 VSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAK 873 (953)
T ss_pred HHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHh
Confidence 799999999998655689999999999999999999999999999999876554 777777554 3445555556666
Q ss_pred HHH-HHhccchHHHHHHHHHHHHHHhhH
Q 042776 79 LLT-KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 79 l~~-~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
.++ .+.|.|....|-.+++.+++++-.
T Consensus 874 ~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 874 KCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred hCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 555 556666666666666666655444
No 12
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.5e-18 Score=140.01 Aligned_cols=107 Identities=25% Similarity=0.295 Sum_probs=92.1
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
|+-+||+++||+.+. .++-||+||||.+.|||||+||||+|++|+||.|+.++|.+||+.|....+..-..++..+++
T Consensus 270 tmlellnqldgfeat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiae 347 (404)
T KOG0728|consen 270 TMLELLNQLDGFEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAE 347 (404)
T ss_pred HHHHHHHhccccccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHH
Confidence 577999999999988 779999999999999999999999999999999999999999999988776666667777777
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhhHHHHhh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKKTEVAEV 110 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~~~~~~~ 110 (147)
+.+|.+-...|-++-+=++++++-..-.+
T Consensus 348 km~gasgaevk~vcteagm~alrerrvhvtqe 379 (404)
T KOG0728|consen 348 KMPGASGAEVKGVCTEAGMYALRERRVHVTQE 379 (404)
T ss_pred hCCCCccchhhhhhhhhhHHHHHHhhccccHH
Confidence 66777778888888888888777544433
No 13
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=5e-18 Score=140.08 Aligned_cols=107 Identities=23% Similarity=0.322 Sum_probs=90.6
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC---CCCChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN---DHNLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~i~~ 78 (147)
|+-+|+++|||+... .++-|++|||||+.|||||+||||+|++++|++||.++|.+||+.|.... ...-++-+++
T Consensus 300 tmleli~qldgfdpr--gnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellar 377 (435)
T KOG0729|consen 300 TMLELINQLDGFDPR--GNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLAR 377 (435)
T ss_pred HHHHHHHhccCCCCC--CCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHh
Confidence 577899999999888 77999999999999999999999999999999999999999999887544 3344556677
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhhHHHHhh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKKTEVAEV 110 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~~~~~~~ 110 (147)
|++.-.|.+..+.|.++-+=+++.+++..-++
T Consensus 378 lcpnstgaeirsvcteagmfairarrk~atek 409 (435)
T KOG0729|consen 378 LCPNSTGAEIRSVCTEAGMFAIRARRKVATEK 409 (435)
T ss_pred hCCCCcchHHHHHHHHhhHHHHHHHhhhhhHH
Confidence 77777788889999999888888777654444
No 14
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.5e-17 Score=134.27 Aligned_cols=100 Identities=25% Similarity=0.418 Sum_probs=86.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+-+||++|||+... .++-||+||||.+.|||||+||||+|++|+|++||..+++-+|.............+++.++.
T Consensus 279 l~ellnqmdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~r 356 (408)
T KOG0727|consen 279 LIELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVAR 356 (408)
T ss_pred HHHHHHhccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcC
Confidence 45899999999887 679999999999999999999999999999999999999999998877766666667777766
Q ss_pred --HHhccchHHHHHHHHHHHHHHhh
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
.++|.+....|-++-+.++++.+
T Consensus 357 pdkis~adi~aicqeagm~avr~nr 381 (408)
T KOG0727|consen 357 PDKISGADINAICQEAGMLAVRENR 381 (408)
T ss_pred ccccchhhHHHHHHHHhHHHHHhcc
Confidence 67788888888888888877655
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=6.1e-17 Score=145.89 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=81.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHH---HHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEI---DEL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i---~~l 79 (147)
|||||++|||+.+. +||.|+|||.||+.|||||+||||||+.++.++|+..+|..|++........+...++ +..
T Consensus 788 VNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~ 865 (952)
T KOG0735|consen 788 VNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQK 865 (952)
T ss_pred HHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhh
Confidence 89999999999998 8999999999999999999999999999999999999999999977654333334444 444
Q ss_pred HHHHhccchHHHHHHHHHHHHHHh
Q 042776 80 LTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 80 ~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+.++.|.|.-..+..+-+.++++.
T Consensus 866 T~g~tgADlq~ll~~A~l~avh~~ 889 (952)
T KOG0735|consen 866 TDGFTGADLQSLLYNAQLAAVHEI 889 (952)
T ss_pred cCCCchhhHHHHHHHHHHHHHHHH
Confidence 458888888766666655555443
No 16
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=8.9e-17 Score=139.97 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=87.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC-----CChHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH-----NLFPEID 77 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~-----~~~~~i~ 77 (147)
+++||.+|||+... .+|+||+|||+|+.||||++||||||+.|+|++||..+|..||+.|+..... .+...+.
T Consensus 363 ~~~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~ 440 (494)
T COG0464 363 VGQLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELA 440 (494)
T ss_pred HHHHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHH
Confidence 78999999999888 7799999999999999999999999999999999999999999999985433 3334455
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHhh
Q 042776 78 ELLTKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 78 ~l~~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
++++++++.+....|.++.+..+.+..
T Consensus 441 ~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 441 EITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 555588999999999999999888775
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=1e-16 Score=145.98 Aligned_cols=100 Identities=23% Similarity=0.298 Sum_probs=84.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHH--
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELL-- 80 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~-- 80 (147)
+++||.+|||+... .+++||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.++...+.....++..++
T Consensus 575 ~~~lL~~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~ 652 (733)
T TIGR01243 575 VNQLLTEMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEM 652 (733)
T ss_pred HHHHHHHhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHH
Confidence 68999999999876 77999999999999999999999999999999999999999999998766554444444444
Q ss_pred -HHHhccchHHHHHHHHHHHHHHhh
Q 042776 81 -TKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 81 -~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
.++++.+....|-++.+.++++..
T Consensus 653 t~g~sgadi~~~~~~A~~~a~~~~~ 677 (733)
T TIGR01243 653 TEGYTGADIEAVCREAAMAALRESI 677 (733)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 488888888888778777777543
No 18
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.3e-17 Score=138.58 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=84.8
Q ss_pred HHHHHHhhCCCCCCCCc---eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDE---RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELL 80 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~---vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~ 80 (147)
++||.+|||+... .++ |+|+||||.|++||.||+| ||+++|+++||+.++|..+++..|+..+......++.++
T Consensus 334 sELLvQmDG~~~t-~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~la 410 (491)
T KOG0738|consen 334 SELLVQMDGVQGT-LENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLA 410 (491)
T ss_pred HHHHHHhhccccc-cccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHH
Confidence 7899999999754 255 8899999999999999999 999999999999999999999999877555555555555
Q ss_pred H---HHhccchHHHHHHHHHHHHHHhhH
Q 042776 81 T---KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 81 ~---~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
+ +|+|.|...+|-++.+..++....
T Consensus 411 e~~eGySGaDI~nvCreAsm~~mRR~i~ 438 (491)
T KOG0738|consen 411 ERSEGYSGADITNVCREASMMAMRRKIA 438 (491)
T ss_pred HHhcCCChHHHHHHHHHHHHHHHHHHHh
Confidence 5 999999999999999988886654
No 19
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=5.6e-17 Score=137.11 Aligned_cols=102 Identities=18% Similarity=0.217 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC---CChHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH---NLFPEIDELL 80 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~l~ 80 (147)
+||+..|||+.+..+..|+|++|||||.+||.|++| ||.++++|++|+..+|.+||+.+|...+. .+...++.++
T Consensus 215 ~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t 292 (386)
T KOG0737|consen 215 NEFMALWDGLSSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMT 292 (386)
T ss_pred HHHHHHhccccCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhc
Confidence 789999999999866679999999999999999999 99999999999999999999999987644 4455556666
Q ss_pred HHHhccchHHHHHHHHHHHHHHhhHHH
Q 042776 81 TKLMKSEVAEVALEGLVEFLKRKKTEV 107 (147)
Q Consensus 81 ~~l~~~~~~~~al~~~~~~l~~~~~~~ 107 (147)
++|+|+|..+.|..+....+++--...
T Consensus 293 ~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 293 EGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 699999999988888887777665543
No 20
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.67 E-value=9.9e-17 Score=144.59 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=84.0
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHH-
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELL- 80 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~- 80 (147)
++++||.+|||+.+. ++++||+|||+|+.||||++||||||+.|+|++|+.++|.+|++.|+...+.....++..++
T Consensus 274 ~ln~lL~~mdg~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~ 351 (644)
T PRK10733 274 TLNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIAR 351 (644)
T ss_pred HHHHHHHhhhcccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHh
Confidence 578999999999876 78999999999999999999999999999999999999999999999766543333444444
Q ss_pred --HHHhccchHHHHHHHHHHHHHHh
Q 042776 81 --TKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 81 --~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
.++++.+....|-++.+.+++..
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r~~ 376 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAARGN 376 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 47888888888888887776543
No 21
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.67 E-value=9.3e-17 Score=155.57 Aligned_cols=105 Identities=15% Similarity=0.154 Sum_probs=83.3
Q ss_pred CcHHHHHHHhhCCCC-CCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC-----CC-CCCh
Q 042776 1 LTLSGLLNFIDGLWS-SCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI-----ND-HNLF 73 (147)
Q Consensus 1 ~tv~~lL~~lDgl~~-~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~-----~~-~~~~ 73 (147)
+|+++||++|||... ....+|+||||||+|+.|||||+||||||+.|+|++|+..+|++++..++.. .+ ..+.
T Consensus 1752 ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl 1831 (2281)
T CHL00206 1752 LSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHT 1831 (2281)
T ss_pred ehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccH
Confidence 368999999999842 1237899999999999999999999999999999999999999988754321 11 1234
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHhhH
Q 042776 74 PEIDELLTKLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 74 ~~i~~l~~~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
..++..+.+++|+|....|=++++.++.+.+.
T Consensus 1832 ~~LA~~T~GfSGADLanLvNEAaliAirq~ks 1863 (2281)
T CHL00206 1832 NGFGSITMGSNARDLVALTNEALSISITQKKS 1863 (2281)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 55666666888988888888888888876653
No 22
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.66 E-value=2.7e-16 Score=134.99 Aligned_cols=100 Identities=24% Similarity=0.402 Sum_probs=84.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC---ChHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN---LFPEIDEL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~---~~~~i~~l 79 (147)
+.+||++|||+... .+++||+|||+|+.||||++||||||+.|+|++|+.++|..|++.++...... ....+...
T Consensus 269 l~~LL~~ld~~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~ 346 (398)
T PTZ00454 269 LLELLNQMDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSR 346 (398)
T ss_pred HHHHHHHhhccCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHH
Confidence 67899999999876 67999999999999999999999999999999999999999999998755433 33444444
Q ss_pred HHHHhccchHHHHHHHHHHHHHHhh
Q 042776 80 LTKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 80 ~~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
+.++++.+....|-++.+.++++..
T Consensus 347 t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 347 PEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4588999999999999888886643
No 23
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.65 E-value=4.1e-16 Score=136.36 Aligned_cols=98 Identities=23% Similarity=0.307 Sum_probs=79.7
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||.+|||+.+. ++++||+|||+|+.||||++||||||+.|+|++|+.++|.+|++.|+.........++..++.
T Consensus 177 ~~~~lL~~~d~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 177 TLNQLLVEMDGFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred HHHHHHhhhccccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 478999999999876 779999999999999999999999999999999999999999999997654443444555555
Q ss_pred ---HHhccchHHHHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVEFLK 101 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~ 101 (147)
++.+.+....|-++.....+
T Consensus 255 ~t~G~sgadl~~l~~eA~~~a~~ 277 (495)
T TIGR01241 255 RTPGFSGADLANLLNEAALLAAR 277 (495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHH
Confidence 66777666666665554443
No 24
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.8e-16 Score=144.23 Aligned_cols=105 Identities=21% Similarity=0.250 Sum_probs=88.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~~l~~ 81 (147)
|+.||..|||+.+. .+|+||+|||||+.+||||+||||||+.++|++|+.++|++|+..+-..-..+... -...++.
T Consensus 391 vSTLLaLmdGldsR--gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~ 468 (1080)
T KOG0732|consen 391 VSTLLALMDGLDSR--GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAE 468 (1080)
T ss_pred HHHHHHhccCCCCC--CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHH
Confidence 68999999999999 88999999999999999999999999999999999999999999887665443332 2344444
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhhHHHHh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKKTEVAE 109 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~~~~~~ 109 (147)
++.|.|....|-++++..++..-...-.
T Consensus 469 ~t~gy~gaDlkaLCTeAal~~~~r~~Pq~y~ 499 (1080)
T KOG0732|consen 469 ETSGYGGADLKALCTEAALIALRRSFPQIYS 499 (1080)
T ss_pred hccccchHHHHHHHHHHhhhhhccccCeeec
Confidence 8889999999999999999876654433
No 25
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.63 E-value=8e-16 Score=135.64 Aligned_cols=63 Identities=33% Similarity=0.551 Sum_probs=59.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
+++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|+..
T Consensus 318 l~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 318 VPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 68999999999877 6799999999999999999999999999999999999999999999864
No 26
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.61 E-value=1.4e-15 Score=132.00 Aligned_cols=101 Identities=25% Similarity=0.325 Sum_probs=83.9
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC---ChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN---LFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~---~~~~i~~ 78 (147)
++.+||++|||+... .++.||+|||+++.||||++||||||++|+|++|+.++|.+||+.|+...... +...+..
T Consensus 306 ~ll~LL~~Ldg~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~ 383 (438)
T PTZ00361 306 TMLELLNQLDGFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIM 383 (438)
T ss_pred HHHHHHHHHhhhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHH
Confidence 367899999999766 67999999999999999999999999999999999999999999998655433 3334444
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
.+.++++.+....|.++.+.++++.+
T Consensus 384 ~t~g~sgAdI~~i~~eA~~~Alr~~r 409 (438)
T PTZ00361 384 AKDELSGADIKAICTEAGLLALRERR 409 (438)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44588888888888888888877654
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.60 E-value=2.5e-15 Score=128.20 Aligned_cols=100 Identities=25% Similarity=0.286 Sum_probs=84.8
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC---CChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH---NLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~ 78 (147)
++.+||+++||+... .+++||+|||+++.||+|++||||||+.|+|++|+.++|.+||+.|+..... .....++.
T Consensus 254 ~l~~lL~~ld~~~~~--~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~ 331 (389)
T PRK03992 254 TLMQLLAEMDGFDPR--GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAE 331 (389)
T ss_pred HHHHHHHhccccCCC--CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHH
Confidence 367899999999776 6799999999999999999999999999999999999999999999875533 33445555
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
.+.++++.+....|.++.+.+++..
T Consensus 332 ~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 332 LTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5558899999999988888887764
No 28
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=5.2e-16 Score=136.63 Aligned_cols=98 Identities=24% Similarity=0.337 Sum_probs=76.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC-------CCCChHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN-------DHNLFPE 75 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~-------~~~~~~~ 75 (147)
|||||+-|||+.+. ++++||+.|||++.||.||+|||||+.++++++||.++|.+||+.|.... ...+..+
T Consensus 354 VNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~e 431 (744)
T KOG0741|consen 354 VNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKE 431 (744)
T ss_pred HHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHH
Confidence 79999999999998 88999999999999999999999999999999999999999999886432 2333445
Q ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhhHHH
Q 042776 76 IDELLTKLMKSEVAEVALEGLVEFLKRKKTEV 107 (147)
Q Consensus 76 i~~l~~~l~~~~~~~~al~~~~~~l~~~~~~~ 107 (147)
++.++..|+|. -+++++...++-...+
T Consensus 432 lA~lTKNfSGA-----EleglVksA~S~A~nR 458 (744)
T KOG0741|consen 432 LAALTKNFSGA-----ELEGLVKSAQSFAMNR 458 (744)
T ss_pred HHHHhcCCchh-----HHHHHHHHHHHHHHHh
Confidence 55555445443 3455555444444333
No 29
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.57 E-value=1.4e-14 Score=123.70 Aligned_cols=81 Identities=19% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHhhCC--------C--CCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC
Q 042776 3 LSGLLNFIDGL--------W--SSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL 72 (147)
Q Consensus 3 v~~lL~~lDgl--------~--~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~ 72 (147)
+++||+.|||. | ......|+||+|||+|+.|||||+||||||+.| .+|+.++|..|++.++......
T Consensus 241 ~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~- 317 (413)
T PLN00020 241 NGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS- 317 (413)
T ss_pred HHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-
Confidence 36899999874 2 122367999999999999999999999999975 5899999999999999877555
Q ss_pred hHHHHHHHHHHhcc
Q 042776 73 FPEIDELLTKLMKS 86 (147)
Q Consensus 73 ~~~i~~l~~~l~~~ 86 (147)
..++..++..+-+.
T Consensus 318 ~~dv~~Lv~~f~gq 331 (413)
T PLN00020 318 REDVVKLVDTFPGQ 331 (413)
T ss_pred HHHHHHHHHcCCCC
Confidence 68899999955544
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=99.56 E-value=7.5e-15 Score=132.47 Aligned_cols=97 Identities=25% Similarity=0.290 Sum_probs=77.7
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||.+|||+... .+++||+|||+|+.|||||+||||||+.|+|++|+.++|..|++.|+..........+..++.
T Consensus 305 ~L~~LL~~~dg~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~ 382 (638)
T CHL00176 305 TLNQLLTEMDGFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIAR 382 (638)
T ss_pred HHHHHHhhhccccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHh
Confidence 478999999999876 789999999999999999999999999999999999999999999997654444445555555
Q ss_pred ---HHhccchHHHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVEFL 100 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l 100 (147)
++.+++....+-++++...
T Consensus 383 ~t~G~sgaDL~~lvneAal~a~ 404 (638)
T CHL00176 383 RTPGFSGADLANLLNEAAILTA 404 (638)
T ss_pred cCCCCCHHHHHHHHHHHHHHHH
Confidence 5555555555554444433
No 31
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.55 E-value=1e-14 Score=128.06 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=77.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC-----CCChHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND-----HNLFPEID 77 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~-----~~~~~~i~ 77 (147)
+++||..|+.. +.+++||+|||+|+.||||++||||||+.|+|++|+.++|.+||+.|+.... ..+...++
T Consensus 347 l~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La 422 (489)
T CHL00195 347 LATFITWLSEK----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLS 422 (489)
T ss_pred HHHHHHHHhcC----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHH
Confidence 46778888753 2569999999999999999999999999999999999999999999986542 22234455
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHH
Q 042776 78 ELLTKLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 78 ~l~~~l~~~~~~~~al~~~~~~l~~ 102 (147)
..+.+|+|++....|.++...++..
T Consensus 423 ~~T~GfSGAdI~~lv~eA~~~A~~~ 447 (489)
T CHL00195 423 KLSNKFSGAEIEQSIIEAMYIAFYE 447 (489)
T ss_pred hhcCCCCHHHHHHHHHHHHHHHHHc
Confidence 5555999999988888888776643
No 32
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=1.9e-15 Score=126.19 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHHHHHH-
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EIDELLT- 81 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~~l~~- 81 (147)
++||.+|.|+... +++++|++|||-|+.||.|++| ||+++||+++|+..+|..||+.++|..+|.+.. ++..|+.
T Consensus 254 TEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~k 330 (439)
T KOG0739|consen 254 TEFLVQMQGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARK 330 (439)
T ss_pred HHHHHhhhccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhh
Confidence 6899999999765 5899999999999999999999 999999999999999999999999999887654 4555544
Q ss_pred --HHhccchHHHHHHHHHHHHHHhhH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
+++|+|..-.+-.++++-+++...
T Consensus 331 TeGySGsDisivVrDalmePvRkvqs 356 (439)
T KOG0739|consen 331 TEGYSGSDISIVVRDALMEPVRKVQS 356 (439)
T ss_pred cCCCCcCceEEEehhhhhhhHHHhhh
Confidence 999988877666777776665543
No 33
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.55 E-value=1.6e-14 Score=118.72 Aligned_cols=93 Identities=18% Similarity=0.251 Sum_probs=80.7
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
.||.||++|||+.+. +||+.|+|||+|+.||||++- ||+..|+|.+|+.++|..|++.|...-+.+....+..++.
T Consensus 238 iVNALLTelDgi~en--eGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~ 313 (368)
T COG1223 238 IVNALLTELDGIKEN--EGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAA 313 (368)
T ss_pred HHHHHHHhccCcccC--CceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 379999999999976 999999999999999999999 9999999999999999999999988776555555555554
Q ss_pred ---HHhccchHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVE 98 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~ 98 (147)
+++|+|..+..|.....
T Consensus 314 ~t~g~SgRdikekvlK~aLh 333 (368)
T COG1223 314 KTKGMSGRDIKEKVLKTALH 333 (368)
T ss_pred HhCCCCchhHHHHHHHHHHH
Confidence 99999998888876544
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.51 E-value=5.9e-14 Score=118.28 Aligned_cols=100 Identities=23% Similarity=0.261 Sum_probs=83.9
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC---CChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH---NLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~ 78 (147)
++.++|.++||+... .+++||+|||+++.||+|++||||||+.|+|++|+.++|..|++.|+..... .....++.
T Consensus 245 ~l~~ll~~ld~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~ 322 (364)
T TIGR01242 245 TLMQLLAELDGFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAK 322 (364)
T ss_pred HHHHHHHHhhCCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHH
Confidence 367889999998766 6799999999999999999999999999999999999999999998865432 34555666
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
++.++.+.+....|.++.+.++++.
T Consensus 323 ~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 323 MTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 6668888888888888888887654
No 35
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=9.7e-15 Score=121.99 Aligned_cols=91 Identities=27% Similarity=0.323 Sum_probs=73.8
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC---CCCChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN---DHNLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~i~~ 78 (147)
|+=+||++|||+... ..|=+|+|||+|+.|||||+||||+|+.+++|+|+...|..|++.+-... ..-.+..+.+
T Consensus 255 TLMeLlnqmdgfd~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK 332 (388)
T KOG0651|consen 255 TLMELLNQMDGFDTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILK 332 (388)
T ss_pred HHHHHHHhhccchhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHH
Confidence 567899999999887 77889999999999999999999999999999999999999988765322 3344677888
Q ss_pred HHHHHhccchHHHHHH
Q 042776 79 LLTKLMKSEVAEVALE 94 (147)
Q Consensus 79 l~~~l~~~~~~~~al~ 94 (147)
+.+++-+.+....|-+
T Consensus 333 ~~d~f~gad~rn~~tE 348 (388)
T KOG0651|consen 333 LVDGFNGADLRNVCTE 348 (388)
T ss_pred HHhccChHHHhhhccc
Confidence 8876665554444433
No 36
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.6e-13 Score=122.91 Aligned_cols=97 Identities=23% Similarity=0.345 Sum_probs=87.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
++||+..|||+.+. ..++||+|||+|+.||||++| ||||+.+.++.|+..+|..|++.+....++....++..++.
T Consensus 305 ~sqlltL~dg~~~~--~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~ 381 (693)
T KOG0730|consen 305 VSQLLTLLDGLKPD--AKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVS 381 (693)
T ss_pred HHHHHHHHhhCcCc--CcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHH
Confidence 68999999999866 779999999999999999999 99999999999999999999999998777665566666666
Q ss_pred --HHhccchHHHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~ 102 (147)
+++|.|....|.++....++.
T Consensus 382 thGyvGaDL~~l~~ea~~~~~r~ 404 (693)
T KOG0730|consen 382 THGYVGADLAALCREASLQATRR 404 (693)
T ss_pred ccchhHHHHHHHHHHHHHHHhhh
Confidence 899999999988888888877
No 37
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.6e-13 Score=118.51 Aligned_cols=102 Identities=20% Similarity=0.155 Sum_probs=89.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh-HHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF-PEIDELL- 80 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~i~~l~- 80 (147)
.++||.++||..+.+++.|+||+|||+|+.+|.|++| ||-++++|++|+.++|..++.+++...++.+. .+++.++
T Consensus 273 ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~ 350 (428)
T KOG0740|consen 273 KTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAK 350 (428)
T ss_pred hhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence 4689999999998888999999999999999999999 99999999999999999999999987766554 3455444
Q ss_pred --HHHhccchHHHHHHHHHHHHHHhhHH
Q 042776 81 --TKLMKSEVAEVALEGLVEFLKRKKTE 106 (147)
Q Consensus 81 --~~l~~~~~~~~al~~~~~~l~~~~~~ 106 (147)
+++.++|..+.|.++.+.-++.....
T Consensus 351 ~Tegysgsdi~~l~kea~~~p~r~~~~~ 378 (428)
T KOG0740|consen 351 VTEGYSGSDITALCKEAAMGPLRELGGT 378 (428)
T ss_pred HhcCcccccHHHHHHHhhcCchhhcccc
Confidence 49999999999999999888776653
No 38
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.31 E-value=6.4e-12 Score=114.71 Aligned_cols=98 Identities=26% Similarity=0.365 Sum_probs=78.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC---ChHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN---LFPEIDEL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~---~~~~i~~l 79 (147)
+++|++.||++... ..++||+|||+|+.||||++||||||+.|+|++|+.++|.+|++.++...... ....+...
T Consensus 299 ~~~Ll~~ld~l~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~ 376 (733)
T TIGR01243 299 VAQLLTLMDGLKGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEV 376 (733)
T ss_pred HHHHHHHhhccccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHh
Confidence 57899999999776 67999999999999999999999999999999999999999999887655433 23344444
Q ss_pred HHHHhccchHHHHHHHHHHHHHH
Q 042776 80 LTKLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 80 ~~~l~~~~~~~~al~~~~~~l~~ 102 (147)
+.++.+.+....|.++....++.
T Consensus 377 t~G~~gadl~~l~~~a~~~al~r 399 (733)
T TIGR01243 377 THGFVGADLAALAKEAAMAALRR 399 (733)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 44777777777666666666654
No 39
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.45 E-value=2.2e-07 Score=65.73 Aligned_cols=47 Identities=38% Similarity=0.613 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSY 51 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~ 51 (147)
+++|+..||..... +.+++||+|||+++.|||+++| |||+.+|+|++
T Consensus 86 ~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 86 LNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred cceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 67899999999765 3569999999999999999999 99999999975
No 40
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.2e-06 Score=76.66 Aligned_cols=98 Identities=26% Similarity=0.310 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++|+..|||+. . +. ++++++||++..+|+|+.|||||++.+++..|+...+..|+..+..............++.
T Consensus 104 ~~~l~~~~d~~~-~-~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~ 180 (494)
T COG0464 104 VAQLLALMDGLK-R-GQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAAR 180 (494)
T ss_pred HHHHHHhccccc-C-Cc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHh
Confidence 689999999999 3 46 8899999999999999999999999999999999999999887765443332334444444
Q ss_pred --HHhccchHHHHHHHHHHHHHHh
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~ 103 (147)
++.+.+....|-+....+++..
T Consensus 181 ~~~~~~~~~~~l~~~~~~~~~~r~ 204 (494)
T COG0464 181 TVGKSGADLGALAKEAALRELRRA 204 (494)
T ss_pred cCCccHHHHHHHHHHHHHHHHHhh
Confidence 5666666666656555555554
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=3.5e-06 Score=73.63 Aligned_cols=46 Identities=24% Similarity=0.330 Sum_probs=43.3
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..++++.|||+|.+||.|+-- |||..|+|++|..++|..||..||.
T Consensus 484 rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 484 RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 568899999999999999998 9999999999999999999998874
No 42
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.2e-05 Score=68.30 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=55.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
||.||+|||.+... .+|++++|+|-.+.||-|+.- |-|-+.+++.|+.+++..|++..+
T Consensus 282 VNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 282 VNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred HHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 79999999999998 669999999999999999999 999999999999999999988654
No 43
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.31 E-value=0.0011 Score=61.53 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=40.5
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.++++|+|||.++.|+|+|++ ||+ .|+|+.|+.+++.+|++.|+
T Consensus 462 s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 462 SKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 358899999999999999999 996 68999999999999999886
No 44
>CHL00181 cbbX CbbX; Provisional
Probab=97.27 E-value=0.0013 Score=54.32 Aligned_cols=65 Identities=17% Similarity=0.318 Sum_probs=49.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF 73 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~ 73 (147)
++.|+..|+... ..++||+||+... .++|+|++ ||+..|+|+.++.+++.+|+..++......+.
T Consensus 148 ~~~L~~~me~~~----~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~ 217 (287)
T CHL00181 148 IEILLQVMENQR----DDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLT 217 (287)
T ss_pred HHHHHHHHhcCC----CCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCC
Confidence 456777787532 4477888876322 34699999 99999999999999999999999865543333
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.06 E-value=0.0022 Score=51.75 Aligned_cols=67 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPE 75 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~ 75 (147)
++.|+..|+... ..+++|++++.. ..++|+|++ ||+..|+|+.++.+++.+|++.++.........+
T Consensus 130 i~~Ll~~~e~~~----~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~ 201 (261)
T TIGR02881 130 IDTLVKGMEDNR----NEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEE 201 (261)
T ss_pred HHHHHHHHhccC----CCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHH
Confidence 456777777642 335566655432 237899999 9999999999999999999999987554443333
No 46
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00043 Score=64.34 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=38.9
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..+.||+|||.++ .+||||.| ||+ .|+|+.|+.+++..||+.+.
T Consensus 314 g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 314 GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 5688999999875 68999999 996 79999999999999998654
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.87 E-value=0.0076 Score=49.61 Aligned_cols=63 Identities=11% Similarity=0.266 Sum_probs=48.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCC--CCC---CCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNH--KNR---LDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN 71 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~--p~~---LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~ 71 (147)
++.|+..|+.-. .+++||+||+. ++. ++|+|.+ ||+..|+|+.++.+++..|+.+++......
T Consensus 147 ~~~Ll~~le~~~----~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~ 214 (284)
T TIGR02880 147 IEILLQVMENQR----DDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYR 214 (284)
T ss_pred HHHHHHHHhcCC----CCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccc
Confidence 467788887532 45778887763 333 4899999 999999999999999999999998765433
No 48
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.26 E-value=0.018 Score=47.92 Aligned_cols=52 Identities=12% Similarity=0.111 Sum_probs=45.0
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChH
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFP 74 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~ 74 (147)
.++|+|||++..++++|+. ||...+.|+.|+.+++.+|++...+........
T Consensus 151 ~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~ 202 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDE 202 (328)
T ss_pred ceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCH
Confidence 6789999999999999988 999999999999999999999887765444433
No 49
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.08 E-value=0.0097 Score=54.96 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=37.8
Q ss_pred CceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
+.+.+|+|||.+ ..+|+||.| ||. .|+|+.|+.+++..|++.+.
T Consensus 310 g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 310 GKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHH
Confidence 458899999963 468999999 997 79999999999999998554
No 50
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.08 E-value=0.018 Score=46.97 Aligned_cols=60 Identities=17% Similarity=0.222 Sum_probs=47.5
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHHHHHH
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EIDELLT 81 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~~l~~ 81 (147)
..++|++||++..|+++++. ||...+.|+.|+.++..++++...+........ .+..++.
T Consensus 129 ~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~ 189 (305)
T TIGR00635 129 PFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIAR 189 (305)
T ss_pred CeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 37799999999999999998 999999999999999999999877644333333 3444444
No 51
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.98 E-value=0.016 Score=54.63 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=37.2
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
+.+.+|+||+..+ .+||||+| ||. .|.|+.|+.+++..||+.+.
T Consensus 315 G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 315 GELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred CCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHH
Confidence 5588999998643 49999999 995 79999999999999976444
No 52
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.87 E-value=0.029 Score=47.98 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=50.9
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCC---CCccccCCCeeee--EEeecCCCHHHHHHHHHHHhCCCCCCChHHH-H
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNR---LDPALLRPGRMDM--HIHMSYCNPSGFRILVSNYLGINDHNLFPEI-D 77 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~---LD~Al~RpGRfd~--~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i-~ 77 (147)
.+|+..++.+... +..+||.+++.|.. +++.|.. ||.. .++|+.|+.+.|..|++..+.........++ .
T Consensus 219 ~~l~~~~n~~~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~ 294 (405)
T TIGR00362 219 EEFFHTFNALHEN--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLE 294 (405)
T ss_pred HHHHHHHHHHHHC--CCCEEEecCCCHHHHhhhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3466667666544 44566666666765 4577876 9974 7999999999999999998876555444444 4
Q ss_pred HHHH
Q 042776 78 ELLT 81 (147)
Q Consensus 78 ~l~~ 81 (147)
.++.
T Consensus 295 ~ia~ 298 (405)
T TIGR00362 295 FIAK 298 (405)
T ss_pred HHHH
Confidence 4443
No 53
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.066 Score=50.30 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=52.5
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
.+++||+||+..+.|.+.+.+ -|-..|.++.|+.++|.+||+-|+...........+.++.
T Consensus 532 ~~~ivv~t~~s~~~lp~~i~~--~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~ 592 (953)
T KOG0736|consen 532 PPVIVVATTSSIEDLPADIQS--LFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVNLKQLAR 592 (953)
T ss_pred CceEEEEeccccccCCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 679999999999999999998 8889999999999999999999998665554555566655
No 54
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.39 E-value=0.071 Score=50.21 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=37.7
Q ss_pred CceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..+.+|+||+.+ ..+|+|+.| ||. .|.++.|+.+++..|++.+.
T Consensus 301 g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 301 GELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred CceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHH
Confidence 457899999977 458999999 996 58999999999999998664
No 55
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.31 E-value=0.14 Score=42.59 Aligned_cols=60 Identities=25% Similarity=0.311 Sum_probs=44.0
Q ss_pred HHHHHHHhhC----------CCCCCCCceEEEEecC-----CCCCCCccccCCCeeeeEEeecCC-CHHHHHHHHHHHhC
Q 042776 3 LSGLLNFIDG----------LWSSCGDERIIVFTTN-----HKNRLDPALLRPGRMDMHIHMSYC-NPSGFRILVSNYLG 66 (147)
Q Consensus 3 v~~lL~~lDg----------l~~~~~~~vivi~aTN-----~p~~LD~Al~RpGRfd~~i~~~~P-~~~~r~~il~~~l~ 66 (147)
.+.||..|+. +.-. ...+||+|+| .-..|.+|+++ ||-..+++++| ...+...++..+.+
T Consensus 129 q~aLl~~l~e~~vtv~~~~~~~~~--~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 129 QNALLEALEERQVTVPGLTTIRLP--PPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred HHHHHHHHhCcEEEECCcCCcCCC--CCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 4567777665 2122 5677888889 77889999999 99999999999 55556666655554
No 56
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.30 E-value=0.047 Score=47.51 Aligned_cols=69 Identities=10% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCC---CCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNR---LDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEI 76 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~---LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i 76 (147)
.+|+..++.+... ...+||+++..|.. |+++|.- ||. ..+.|..|+.+.|.+|++......+.....++
T Consensus 231 ~~l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~ 304 (450)
T PRK00149 231 EEFFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEV 304 (450)
T ss_pred HHHHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3566667776554 34566666666666 6788887 997 57899999999999999988865544444444
No 57
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.25 E-value=0.06 Score=43.57 Aligned_cols=83 Identities=17% Similarity=0.242 Sum_probs=54.0
Q ss_pred ceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHHHHh-ccchHHHHH
Q 042776 20 ERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLTKLM-KSEVAEVAL 93 (147)
Q Consensus 20 ~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~~l~-~~~~~~~al 93 (147)
+..||+|+|.. ..+++||++ || ..+++++|+.+.-.+|+..+++..+ .....+..++..+- .........
T Consensus 151 ~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~-~~~~~iv~~~~~~R~~~~~~~~~~ 226 (262)
T TIGR02640 151 EFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDVAE-DSAATIVRLVREFRASGDEITSGL 226 (262)
T ss_pred CCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHhhCCccCCcH
Confidence 45689999976 367999999 99 6899999999999999998875322 12223333333222 222233346
Q ss_pred HHHHHHHHHhhHH
Q 042776 94 EGLVEFLKRKKTE 106 (147)
Q Consensus 94 ~~~~~~l~~~~~~ 106 (147)
+..+.|.+.....
T Consensus 227 r~~i~~~~~~~~~ 239 (262)
T TIGR02640 227 RASLMIAEVATQQ 239 (262)
T ss_pred HHHHHHHHHHHHc
Confidence 6677766655443
No 58
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.16 E-value=0.064 Score=44.38 Aligned_cols=61 Identities=10% Similarity=0.178 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..++... ..+++|++||.++.|.+++.. |+ ..++|+.|+..+...++..++.....
T Consensus 134 ~~~Ll~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~g~ 194 (355)
T TIGR02397 134 FNALLKTLEEPP----EHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKEGI 194 (355)
T ss_pred HHHHHHHHhCCc----cceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 456777776532 447778888999999999988 77 46899999999999999887755443
No 59
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.92 E-value=0.023 Score=53.59 Aligned_cols=45 Identities=18% Similarity=0.111 Sum_probs=39.1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.+.+|+||+.++ .+|+|+.| ||+ .|.++.|+.+++..|++.+..
T Consensus 306 g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 306 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhh
Confidence 5688999999887 49999999 998 589999999999999986653
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.90 E-value=0.22 Score=43.17 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
|.||..|+.-. .+.++|.+|+.|+.|.|++++ |+ ..|+|+.|+.++..+++....+
T Consensus 135 naLLk~LEep~----~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~~~ 190 (394)
T PRK07940 135 NALLKAVEEPP----PRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRRDG 190 (394)
T ss_pred HHHHHHhhcCC----CCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHhcC
Confidence 56788776532 335555555559999999998 87 6999999999998888864433
No 61
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.82 E-value=0.055 Score=44.24 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=40.4
Q ss_pred HHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 6 lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
|...|+... .+..+|+|||.++.++|+++. ||. .+.|+.|+.+++..++..+
T Consensus 121 L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 121 LRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 344466543 346788899999999999998 885 6899999999998776654
No 62
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=94.56 E-value=0.082 Score=47.31 Aligned_cols=51 Identities=24% Similarity=0.140 Sum_probs=40.7
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF 73 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~ 73 (147)
-++|++|||.|+.|+||+++ |+. .|.|+.++.+++..|++.++........
T Consensus 234 ~rlI~ATt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~k~~i~is 284 (531)
T TIGR02902 234 FRLIGATTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAEKIGINLE 284 (531)
T ss_pred eEEEEEecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcC
Confidence 36677788899999999999 885 6788888889999999998865544333
No 63
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.35 E-value=0.55 Score=38.98 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=39.0
Q ss_pred CceEEEEecCCCC---CCCccccCCCeee-eEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKN---RLDPALLRPGRMD-MHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~---~LD~Al~RpGRfd-~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..+.+|++||.++ .|++.+.+ ||. ..|+|+.++.++...|++..+.
T Consensus 164 ~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 164 AKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred CeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 5688999999886 58888877 775 7899999999999999998774
No 64
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.12 E-value=0.26 Score=43.68 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
+.||..|+... ..+++|++|+.|..|+++++. |+. .+.|..++.++...+++.......
T Consensus 135 ~~LLk~LE~p~----~~vv~Ilattn~~kl~~~L~S--R~~-vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 135 NALLKTLEEPP----SHVVFVLATTNLEKVPPTIIS--RCQ-VIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred HHHHHHHHhCC----CcEEEEEEeCChHhhhHHHhc--CcE-EEEECCccHHHHHHHHHHHHHHcC
Confidence 45666666432 447777777788999999998 774 799999999999999888765443
No 65
>PRK06893 DNA replication initiation factor; Validated
Probab=94.11 E-value=0.1 Score=41.32 Aligned_cols=73 Identities=8% Similarity=0.096 Sum_probs=48.3
Q ss_pred HHHHHhhCCCCCCCCc-eEEEEecCCCCCCC---ccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHH
Q 042776 5 GLLNFIDGLWSSCGDE-RIIVFTTNHKNRLD---PALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDEL 79 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~-vivi~aTN~p~~LD---~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l 79 (147)
.|+..++.+... ++ ++|+.++..|..++ |.|....++...+.++.|+.+.+.+|++............++...
T Consensus 112 ~l~~l~n~~~~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~ 188 (229)
T PRK06893 112 AIFDLFNRIKEQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANF 188 (229)
T ss_pred HHHHHHHHHHHc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 344555555433 33 44555666788776 888884445688999999999999999977754444445444433
No 66
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.99 E-value=0.22 Score=46.66 Aligned_cols=64 Identities=14% Similarity=0.202 Sum_probs=51.1
Q ss_pred HHHHHHh-hCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFI-DGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~l-Dgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+.+|+++ +-+... +..+.|||+.+....|.|-|.-|++|+-.+.++.|+..+|.+||..++...
T Consensus 525 a~flnqvi~~y~~~-~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~ 589 (952)
T KOG0735|consen 525 AAFLNQVIKIYLKR-NRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKN 589 (952)
T ss_pred HHHHHHHHHHHHcc-CcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhh
Confidence 4455443 333333 344679999999999999999999999999999999999999999887643
No 67
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=93.98 E-value=0.12 Score=39.26 Aligned_cols=55 Identities=11% Similarity=0.137 Sum_probs=43.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
.+.||..|+... ...++|++||.+..|.+++.. |+ ..++|..|+.++...++...
T Consensus 113 ~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 113 ANALLKTLEEPP----PNTLFILITPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred HHHHHHHhcCCC----CCeEEEEEECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc
Confidence 456777776532 346677778888999999988 66 47999999999999998876
No 68
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=93.84 E-value=0.14 Score=47.96 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=38.4
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
.++++|+|||.. .|+|||+. ||+ .|.|.-++.++..+|++.|+-
T Consensus 464 s~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 464 SDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred CceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 468999999987 59999998 997 588998999999999998883
No 69
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.14 E-value=1.1 Score=36.67 Aligned_cols=70 Identities=7% Similarity=0.096 Sum_probs=45.1
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHH
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF-PEIDELLT 81 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~i~~l~~ 81 (147)
.|+..|+.... . ..+|++|+.+..+.++|.. |+ ..+.|..|+.++...++..++........ ..+..++.
T Consensus 144 ~L~~~le~~~~---~-~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~ 214 (337)
T PRK12402 144 ALRRIMEQYSR---T-CRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAY 214 (337)
T ss_pred HHHHHHHhccC---C-CeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 34455554432 2 3455666677788888876 65 46899999999999999888765443333 33444443
No 70
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=93.08 E-value=0.42 Score=43.14 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=45.3
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.+.||..|+.-. ..+++|++|+.|+.|.+.++. |+. .+.|..|+..+...++...+....
T Consensus 136 ~naLLKtLEepp----~~~ifIlatt~~~ki~~tI~S--Rc~-~~~f~~~~~~ei~~~L~~i~~~eg 195 (559)
T PRK05563 136 FNALLKTLEEPP----AHVIFILATTEPHKIPATILS--RCQ-RFDFKRISVEDIVERLKYILDKEG 195 (559)
T ss_pred HHHHHHHhcCCC----CCeEEEEEeCChhhCcHHHHh--Hhe-EEecCCCCHHHHHHHHHHHHHHcC
Confidence 456777776543 447777778889999999887 764 578999999998888888775444
No 71
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.01 E-value=0.21 Score=42.50 Aligned_cols=55 Identities=16% Similarity=0.271 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
-|.||..|+.- ..++++|.+|++|+.|.|.++. |. ..|.|+.|+.++..+.|...
T Consensus 149 aNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 149 ANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 37788888842 2568899999999999999988 88 78999999999998888764
No 72
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=92.95 E-value=1.3 Score=36.28 Aligned_cols=78 Identities=15% Similarity=0.214 Sum_probs=58.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCcccc-C--------------------CCeeeeEEeecCCCHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALL-R--------------------PGRMDMHIHMSYCNPSGFRILVS 62 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~-R--------------------pGRfd~~i~~~~P~~~~r~~il~ 62 (147)
..|-+.|||--....++|+|.+|+||-+.+..-.. | ..||-..|.|..|+.+.-.+|++
T Consensus 125 k~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~ 204 (249)
T PF05673_consen 125 KALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVR 204 (249)
T ss_pred HHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHH
Confidence 56778899875444588999999999887765431 1 24899999999999999999999
Q ss_pred HHhCCCCCCCh-HHHHHHHH
Q 042776 63 NYLGINDHNLF-PEIDELLT 81 (147)
Q Consensus 63 ~~l~~~~~~~~-~~i~~l~~ 81 (147)
+|+........ +++..-|.
T Consensus 205 ~~~~~~g~~~~~e~l~~~Al 224 (249)
T PF05673_consen 205 HYAERYGLELDEEELRQEAL 224 (249)
T ss_pred HHHHHcCCCCCHHHHHHHHH
Confidence 99965554443 34444444
No 73
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=92.87 E-value=0.22 Score=42.31 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=37.7
Q ss_pred CceEEEEecCCCC-CCCccccCCCeeeeEEeecCCCH-HHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKN-RLDPALLRPGRMDMHIHMSYCNP-SGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~-~LD~Al~RpGRfd~~i~~~~P~~-~~r~~il~~~l~ 66 (147)
..+++|+|+|-.+ .|.++|+. ||...|.++.|.. +++.+|+.....
T Consensus 170 ~rfiviAt~NP~e~~l~~aLld--RF~~~v~v~~~~~~~e~~~il~~~~~ 217 (334)
T PRK13407 170 ARFVLVGSGNPEEGELRPQLLD--RFGLSVEVRSPRDVETRVEVIRRRDA 217 (334)
T ss_pred CCEEEEecCCcccCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHhhc
Confidence 4577888888544 58999999 9999999998877 889999987543
No 74
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.67 E-value=0.48 Score=42.30 Aligned_cols=61 Identities=11% Similarity=0.151 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..|+.-. ..+++|++|+.++.|.++++. |+ ..+.|..++.......++..+.....
T Consensus 138 ~NALLKtLEEPp----~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 138 FNALLKTLEEPP----AHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred HHHHHHHhhcCC----CceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHcCC
Confidence 466777775432 458888999999999999998 87 45888888888888888877655433
No 75
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.66 E-value=0.28 Score=43.12 Aligned_cols=73 Identities=12% Similarity=0.231 Sum_probs=47.4
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCC---CCCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHH-
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKN---RLDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDE- 78 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~---~LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~- 78 (147)
+|+..++.+... ...+||.+++.|. .+++.|+. ||. ..+.+..|+.+.|.+|++............++..
T Consensus 223 elf~l~N~l~~~--~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~ 298 (445)
T PRK12422 223 EFFHTFNSLHTE--GKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDF 298 (445)
T ss_pred HHHHHHHHHHHC--CCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 444455555432 3344444444454 56789998 997 7888888999999999998876655555555444
Q ss_pred HHH
Q 042776 79 LLT 81 (147)
Q Consensus 79 l~~ 81 (147)
++.
T Consensus 299 la~ 301 (445)
T PRK12422 299 LIE 301 (445)
T ss_pred HHH
Confidence 444
No 76
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=92.34 E-value=0.51 Score=44.05 Aligned_cols=59 Identities=12% Similarity=0.191 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.+.||..|+.-+ +.+++|++|+.|+.|.+.++. |+. .+.|..|+.++...++...+...
T Consensus 135 ~NALLKtLEEPP----~~tifILaTte~~KLl~TI~S--Rcq-~ieF~~L~~eeI~~~L~~il~ke 193 (725)
T PRK07133 135 FNALLKTLEEPP----KHVIFILATTEVHKIPLTILS--RVQ-RFNFRRISEDEIVSRLEFILEKE 193 (725)
T ss_pred HHHHHHHhhcCC----CceEEEEEcCChhhhhHHHHh--hce-eEEccCCCHHHHHHHHHHHHHHc
Confidence 456777777533 457888888899999999988 774 79999999999888887765433
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.33 E-value=0.99 Score=38.24 Aligned_cols=61 Identities=10% Similarity=0.157 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..|+-.. ..+.+|++|+.++.|.+++.- |+ ..++|..|+.++...++...+.....
T Consensus 136 ~naLLk~lEe~~----~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~g~ 196 (363)
T PRK14961 136 FNALLKTLEEPP----QHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKESI 196 (363)
T ss_pred HHHHHHHHhcCC----CCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 345666666532 346677788888999999876 76 57899999999999998887755443
No 78
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.94 E-value=0.99 Score=37.92 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
++.||..++... ...++|++|+.+..+.+++.. |+- .+.|..|+.++...++...+.....
T Consensus 125 ~~~ll~~le~~~----~~~~~Il~~~~~~kl~~~l~s--r~~-~v~~~~~~~~~l~~~l~~~~~~~g~ 185 (367)
T PRK14970 125 FNAFLKTLEEPP----AHAIFILATTEKHKIIPTILS--RCQ-IFDFKRITIKDIKEHLAGIAVKEGI 185 (367)
T ss_pred HHHHHHHHhCCC----CceEEEEEeCCcccCCHHHHh--cce-eEecCCccHHHHHHHHHHHHHHcCC
Confidence 355666666532 345667777888999999987 553 5889999999988888876654433
No 79
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.81 E-value=0.28 Score=41.61 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=37.2
Q ss_pred CceEEEEecCCCC-CCCccccCCCeeeeEEeecCCCH-HHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKN-RLDPALLRPGRMDMHIHMSYCNP-SGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~-~LD~Al~RpGRfd~~i~~~~P~~-~~r~~il~~~l~ 66 (147)
..+++|+|+|-.+ .|.++|+. ||..++.++.|.. +++.+|++....
T Consensus 173 ~r~iviat~np~eg~l~~~Lld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 173 ARFVLVGSGNPEEGELRPQLLD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred CCEEEEeccccccCCCCHHHHh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 4467888888544 69999999 9999999999976 888999987543
No 80
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.75 E-value=0.66 Score=41.23 Aligned_cols=60 Identities=13% Similarity=0.209 Sum_probs=44.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
+.||..|+... ..+++|++|+.++.|.+++.. |+. .+.|..|+..+...++..++.....
T Consensus 137 naLLk~LEepp----~~~v~Il~tt~~~kl~~tI~S--Rc~-~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 137 NALLKTLEEPP----PRTIFILCTTEYDKIPPTILS--RCQ-RFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred HHHHHHHhcCC----CCeEEEEEECCHHHHHHHHHH--hce-EEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 55666666532 346666777778899999887 664 6899999999999999887765443
No 81
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.51 E-value=0.82 Score=40.96 Aligned_cols=61 Identities=11% Similarity=0.181 Sum_probs=47.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..|+.- ...+++|++|+.++.+.+++.. |+ ..++|..++.++...++...+.....
T Consensus 145 ~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 145 FNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred HHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45566666642 2457888888999999999987 76 57889999999999999988865543
No 82
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.39 E-value=2.3 Score=35.77 Aligned_cols=58 Identities=12% Similarity=0.068 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCC---CCCccccCCCee-eeEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKN---RLDPALLRPGRM-DMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~---~LD~Al~RpGRf-d~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..|+..++.+. +..+.||+++|.++ .++|.+.. || ...|+|+.++.++...|++..+.
T Consensus 160 ~~l~~~~~~~~---~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~ 221 (394)
T PRK00411 160 YSLLRAHEEYP---GARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVE 221 (394)
T ss_pred HHHHHhhhccC---CCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHH
Confidence 34444444442 23577888888664 57777765 55 36789999999999999988764
No 83
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.26 E-value=1.3 Score=39.59 Aligned_cols=61 Identities=15% Similarity=0.287 Sum_probs=46.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
++.||..|+.-. ..+++|++||.+..|.+++.. |+. .+.|..|+.++...++...+.....
T Consensus 133 ~naLLk~LEep~----~~t~~Il~t~~~~kl~~~I~S--Rc~-~~~f~~ls~~el~~~L~~i~~~egi 193 (504)
T PRK14963 133 FNALLKTLEEPP----EHVIFILATTEPEKMPPTILS--RTQ-HFRFRRLTEEEIAGKLRRLLEAEGR 193 (504)
T ss_pred HHHHHHHHHhCC----CCEEEEEEcCChhhCChHHhc--ceE-EEEecCCCHHHHHHHHHHHHHHcCC
Confidence 456666666532 447788888999999999987 764 6999999999999999887755443
No 84
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.92 E-value=1.3 Score=41.99 Aligned_cols=61 Identities=10% Similarity=0.183 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||..|..-. ..+.+|++||.++.|.+.|+- |+ .+|.|..++.++...+|..++..+..
T Consensus 136 ~NALLKtLEEPP----~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI 196 (830)
T PRK07003 136 FNAMLKTLEEPP----PHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEERI 196 (830)
T ss_pred HHHHHHHHHhcC----CCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 466777776543 458889999999999999987 77 68899989999988888888765543
No 85
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=90.91 E-value=1.3 Score=42.88 Aligned_cols=81 Identities=14% Similarity=0.074 Sum_probs=55.9
Q ss_pred CceEEEEecCC---CCCCCccccCCCeeee-EEeecCCCHHHHHHHHHHHhCCCCCCChHH-HHHHHH-HHhccchHHHH
Q 042776 19 DERIIVFTTNH---KNRLDPALLRPGRMDM-HIHMSYCNPSGFRILVSNYLGINDHNLFPE-IDELLT-KLMKSEVAEVA 92 (147)
Q Consensus 19 ~~vivi~aTN~---p~~LD~Al~RpGRfd~-~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i~~l~~-~l~~~~~~~~a 92 (147)
..++||++||. |+.|+|.+.. ||-. .|.|+.++.+++.+||...+.........+ +.-+|. .....+|+-.|
T Consensus 901 SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKA 978 (1164)
T PTZ00112 901 SKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKA 978 (1164)
T ss_pred CeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHH
Confidence 56889999984 7788898876 5543 589999999999999998876433233333 444444 22345777777
Q ss_pred HHHHHHHHH
Q 042776 93 LEGLVEFLK 101 (147)
Q Consensus 93 l~~~~~~l~ 101 (147)
|.-+..+++
T Consensus 979 LDILRrAgE 987 (1164)
T PTZ00112 979 LQICRKAFE 987 (1164)
T ss_pred HHHHHHHHh
Confidence 777766665
No 86
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=90.73 E-value=0.7 Score=40.39 Aligned_cols=71 Identities=15% Similarity=0.275 Sum_probs=46.7
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCC---CccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHH
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRL---DPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDEL 79 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~L---D~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l 79 (147)
+|+..++.+... ...+||++.+.|..+ ++.++. ||. ..+.+..||.+.|..|++............++...
T Consensus 215 elf~~~n~l~~~--~k~iIitsd~~p~~l~~l~~rL~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~ 290 (440)
T PRK14088 215 ELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNF 290 (440)
T ss_pred HHHHHHHHHHHc--CCeEEEECCCCHHHHHHHHHHHhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 466666666554 345555555666664 466766 764 56788899999999999988765544444444333
No 87
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=90.58 E-value=0.46 Score=40.63 Aligned_cols=45 Identities=24% Similarity=0.320 Sum_probs=36.7
Q ss_pred CceEEEEecCCCC-CCCccccCCCeeeeEEeecCCC-HHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN-RLDPALLRPGRMDMHIHMSYCN-PSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~-~LD~Al~RpGRfd~~i~~~~P~-~~~r~~il~~~l 65 (147)
..+++|+|.|-.+ .|.++|+. ||..+|.++.|+ .+.+.+|++...
T Consensus 186 ~rfiviaT~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 186 ARFVLVGSGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred CCEEEEeccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhh
Confidence 4566777777544 59999999 999999999998 589999998754
No 88
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.28 E-value=1.3 Score=40.72 Aligned_cols=72 Identities=14% Similarity=0.191 Sum_probs=49.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCC----CCCCccccCCCeeee--EEeecCCCHHHHHHHHHHHhCCCCCCChHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHK----NRLDPALLRPGRMDM--HIHMSYCNPSGFRILVSNYLGINDHNLFPEID 77 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p----~~LD~Al~RpGRfd~--~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~ 77 (147)
.+|+..++.+... +.. ||+|+|++ ..|++.|+. ||.. .+++..||.+.|.+||+.........+..++.
T Consensus 397 eeLF~l~N~l~e~--gk~-IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi 471 (617)
T PRK14086 397 EEFFHTFNTLHNA--NKQ-IVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVL 471 (617)
T ss_pred HHHHHHHHHHHhc--CCC-EEEecCCChHhhhhccHHHHh--hhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 4566667776544 334 44566654 357888988 9864 55778899999999999888766555555544
Q ss_pred HHH
Q 042776 78 ELL 80 (147)
Q Consensus 78 ~l~ 80 (147)
.+.
T Consensus 472 ~yL 474 (617)
T PRK14086 472 EFI 474 (617)
T ss_pred HHH
Confidence 443
No 89
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.18 E-value=0.99 Score=34.74 Aligned_cols=74 Identities=14% Similarity=0.171 Sum_probs=44.3
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCC---ccccCCCee--eeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLD---PALLRPGRM--DMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EID 77 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD---~Al~RpGRf--d~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~ 77 (147)
..|...++.+... ...+|+.++..+..++ +.|.. || ...|.++.|+.+++..+++.+.......... .+.
T Consensus 110 ~~L~~~l~~~~~~--~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~ 185 (226)
T TIGR03420 110 EALFHLYNRVREA--GGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVAD 185 (226)
T ss_pred HHHHHHHHHHHHc--CCeEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 3455555554333 3344444444554443 66776 65 4789999999999999999876533333333 344
Q ss_pred HHHH
Q 042776 78 ELLT 81 (147)
Q Consensus 78 ~l~~ 81 (147)
.++.
T Consensus 186 ~L~~ 189 (226)
T TIGR03420 186 YLLR 189 (226)
T ss_pred HHHH
Confidence 4444
No 90
>PRK09087 hypothetical protein; Validated
Probab=89.97 E-value=0.77 Score=36.51 Aligned_cols=69 Identities=10% Similarity=0.215 Sum_probs=47.8
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCC---CccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRL---DPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEI 76 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~L---D~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i 76 (147)
.+|...++.+... +..+||+++..|..+ .|.|+- ||. ..+.+..|+.+.+.++++.++.........++
T Consensus 104 ~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev 177 (226)
T PRK09087 104 TGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHV 177 (226)
T ss_pred HHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3455566666554 446666666666544 577877 887 78888999999999999988866544444443
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.81 E-value=0.9 Score=41.65 Aligned_cols=59 Identities=14% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
+.||..|+.-. ..+++|++|+.++.|.++++. |+. .++|..|+..+...++...+....
T Consensus 137 NaLLKtLEEPp----~~tvfIL~Tt~~~KLl~TI~S--Rcq-~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 137 NALLKTLEEPP----KHVVFIFATTEFQKIPLTIIS--RCQ-RYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred HHHHHHHHhCC----CcEEEEEECCChHhhhHHHHh--hhh-hcccCCCCHHHHHHHHHHHHHHcC
Confidence 55677776533 447788888889999999988 775 689999999999888887775443
No 92
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=89.78 E-value=0.67 Score=42.08 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=36.3
Q ss_pred ceEEEEecCCCC---CCCccccCCCeeeeEEeec-CCCHHHHHHHHHHHh
Q 042776 20 ERIIVFTTNHKN---RLDPALLRPGRMDMHIHMS-YCNPSGFRILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p~---~LD~Al~RpGRfd~~i~~~-~P~~~~r~~il~~~l 65 (147)
...||+|+|..+ .|.++|+. ||+.+|.+. +|+..+|.+|++.++
T Consensus 127 ~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 127 KFALIATYDPAEGGGGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRER 174 (589)
T ss_pred ceEEEEecCCccccCCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHH
Confidence 467889999765 79999999 999998886 567777899988765
No 93
>PRK04195 replication factor C large subunit; Provisional
Probab=89.77 E-value=2 Score=37.81 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=46.4
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHhccchHHHHHHHH
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL-FPEIDELLTKLMKSEVAEVALEGL 96 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~i~~l~~~l~~~~~~~~al~~~ 96 (147)
..+|++||.+..+++.-+| +.-..|.|+.|+..+...+++.++....... ...+..++.. +..+...|+..+
T Consensus 131 ~~iIli~n~~~~~~~k~Lr--sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~--s~GDlR~ain~L 203 (482)
T PRK04195 131 QPIILTANDPYDPSLRELR--NACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAER--SGGDLRSAINDL 203 (482)
T ss_pred CCEEEeccCccccchhhHh--ccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHH
Confidence 3467788999999884444 4456799999999999999998875544332 3344444432 233444444444
No 94
>PRK08727 hypothetical protein; Validated
Probab=89.58 E-value=0.71 Score=36.67 Aligned_cols=72 Identities=18% Similarity=0.184 Sum_probs=44.5
Q ss_pred HHHHhhCCCCCCCCceEEEEecCCCCCC---CccccCCCee--eeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHHHH
Q 042776 6 LLNFIDGLWSSCGDERIIVFTTNHKNRL---DPALLRPGRM--DMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EIDEL 79 (147)
Q Consensus 6 lL~~lDgl~~~~~~~vivi~aTN~p~~L---D~Al~RpGRf--d~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~~l 79 (147)
|+..++..... ...+|+.+.+.|..+ +|+|.. || -..+.++.|+.+.+..|++.+.......... .+..+
T Consensus 115 lf~l~n~~~~~--~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~L 190 (233)
T PRK08727 115 LFDFHNRARAA--GITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWL 190 (233)
T ss_pred HHHHHHHHHHc--CCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44444444332 223455555577766 799988 87 4678899999999999999765433333333 33444
Q ss_pred HH
Q 042776 80 LT 81 (147)
Q Consensus 80 ~~ 81 (147)
+.
T Consensus 191 a~ 192 (233)
T PRK08727 191 LT 192 (233)
T ss_pred HH
Confidence 43
No 95
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.48 E-value=1.1 Score=41.24 Aligned_cols=60 Identities=15% Similarity=0.293 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.+.||..|+.-. ..+++|++||.++.|.+.|+. |+ ..|.|..++.++...+|...+....
T Consensus 136 ~naLLk~LEEP~----~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~eg 195 (624)
T PRK14959 136 FNALLKTLEEPP----ARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGREG 195 (624)
T ss_pred HHHHHHHhhccC----CCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHcC
Confidence 466777776532 447788889999999998887 76 4689999999998888887665443
No 96
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.15 E-value=2.2 Score=34.48 Aligned_cols=69 Identities=6% Similarity=0.038 Sum_probs=46.1
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC-hHHHHHHH
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL-FPEIDELL 80 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~i~~l~ 80 (147)
.|+..++.... ...+|++||.+..+.+++.. |+. .++|+.++.++...++..++....... ...+..++
T Consensus 121 ~L~~~le~~~~----~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~ 190 (319)
T PRK00440 121 ALRRTMEMYSQ----NTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY 190 (319)
T ss_pred HHHHHHhcCCC----CCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45555554332 24566777888888888877 665 489999999999999998886554433 33344443
No 97
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=89.15 E-value=2 Score=39.32 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=42.6
Q ss_pred eEEEE-ecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 042776 21 RIIVF-TTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLTK 82 (147)
Q Consensus 21 vivi~-aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~~ 82 (147)
+++|+ ||+.++.++++|+. ||. .++|+..+.++...|++.++......+..++..+...
T Consensus 324 ~VLI~aTt~~~~~l~~aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ 383 (615)
T TIGR02903 324 FVLIGATTRDPEEINPALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIAR 383 (615)
T ss_pred EEEEEeccccccccCHHHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45554 56679999999987 997 5788888999999999998875444444444444433
No 98
>PRK13342 recombination factor protein RarA; Reviewed
Probab=88.98 E-value=3.4 Score=35.59 Aligned_cols=45 Identities=18% Similarity=0.177 Sum_probs=35.7
Q ss_pred ceEEEEecC--CCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 20 ERIIVFTTN--HKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 20 ~vivi~aTN--~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.+++|++|+ ....++++|+. |+ ..+.|..++.++...++...+..
T Consensus 120 ~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 120 TITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 466666653 35589999999 88 78999999999999999887653
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=88.50 E-value=0.96 Score=35.97 Aligned_cols=57 Identities=11% Similarity=0.103 Sum_probs=40.4
Q ss_pred eEEEEecCCCCC---CCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHH
Q 042776 21 RIIVFTTNHKNR---LDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDEL 79 (147)
Q Consensus 21 vivi~aTN~p~~---LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l 79 (147)
.+|+.+++.|.. +.|.|.- |+. ..+.+..|+.+++.++++............++...
T Consensus 133 ~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~ 194 (235)
T PRK08084 133 RLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRF 194 (235)
T ss_pred eEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 456666667666 5799988 987 78899999999999999875543334444444333
No 100
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.42 E-value=1.1 Score=42.02 Aligned_cols=62 Identities=21% Similarity=0.308 Sum_probs=44.7
Q ss_pred HHHHHHHhh-CCCCCC------CCceEEEEecCCC-------------------------CCCCccccCCCeeeeEEeec
Q 042776 3 LSGLLNFID-GLWSSC------GDERIIVFTTNHK-------------------------NRLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 3 v~~lL~~lD-gl~~~~------~~~vivi~aTN~p-------------------------~~LD~Al~RpGRfd~~i~~~ 50 (147)
.+.||+.|| |.-... -.+.++|+|||.- ..+.|.++. |+|..|.|.
T Consensus 574 ~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~ 651 (758)
T PRK11034 574 FNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_pred HHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcC
Confidence 366888887 432110 0367899999932 125577776 999999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 042776 51 YCNPSGFRILVSNYLG 66 (147)
Q Consensus 51 ~P~~~~r~~il~~~l~ 66 (147)
..+.+...+|+..++.
T Consensus 652 ~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 652 HLSTDVIHQVVDKFIV 667 (758)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999887763
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.21 E-value=1.6 Score=41.11 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=35.1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
+.+.+|+||+..+ ..||++.| ||.. |.+..|+.++...|++.
T Consensus 306 g~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 306 GELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFG 352 (821)
T ss_pred CCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHH
Confidence 4577999999764 58999999 9975 89999999998888763
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.17 E-value=2.3 Score=37.38 Aligned_cols=58 Identities=10% Similarity=0.112 Sum_probs=44.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+.||..|+.-. +.+++|++||.+..|.++|+. |+. .++|..++.++...++...+...
T Consensus 139 n~LLk~lEep~----~~~~~Il~t~~~~kl~~tI~s--Rc~-~v~f~~l~~~el~~~L~~~~~~e 196 (451)
T PRK06305 139 NSLLKTLEEPP----QHVKFFLATTEIHKIPGTILS--RCQ-KMHLKRIPEETIIDKLALIAKQE 196 (451)
T ss_pred HHHHHHhhcCC----CCceEEEEeCChHhcchHHHH--hce-EEeCCCCCHHHHHHHHHHHHHHc
Confidence 45666666532 457788888999999999987 764 58999999999888887766443
No 103
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.12 E-value=3.8 Score=34.86 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
.|.||..|..-. ...++|..|+.|+.|.|.++- |+ ..+.|+.|+.++...++...
T Consensus 158 anaLLk~LEEpp----~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 158 ANAILKTLEEPP----ARALFILISHSSGRLLPTIRS--RC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHHhcCC----CCceEEEEECChhhccHHHHh--hc-cEEEecCCCHHHHHHHHHHh
Confidence 466788887633 335666667889999998876 87 69999999999999999874
No 104
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.07 E-value=0.99 Score=41.98 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=46.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.|.||..|+.- ..++++|++||.++.|.+.|+- |+ ..+.|..++.++....+..++....
T Consensus 141 aNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 141 FNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred HHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHHHHHHcC
Confidence 45666666642 2557888999999999999987 87 7899999999998888887775443
No 105
>smart00350 MCM minichromosome maintenance proteins.
Probab=87.53 E-value=1.4 Score=39.27 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=36.3
Q ss_pred CceEEEEecCCCC-------------CCCccccCCCeeeeEEee-cCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN-------------RLDPALLRPGRMDMHIHM-SYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~-------------~LD~Al~RpGRfd~~i~~-~~P~~~~r~~il~~~l 65 (147)
....||||+|..+ .|+|+++. |||..+.+ +.|+.+....|+++.+
T Consensus 342 ~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 342 ARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred CCcEEEEEeCCCCcccCCCcChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHH
Confidence 3466899999542 69999999 99986555 7999999999998754
No 106
>PRK06620 hypothetical protein; Validated
Probab=87.52 E-value=1.6 Score=34.37 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=46.9
Q ss_pred HHHHhhCCCCCCCCceEEEEecCCCCC--CCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 042776 6 LLNFIDGLWSSCGDERIIVFTTNHKNR--LDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELL 80 (147)
Q Consensus 6 lL~~lDgl~~~~~~~vivi~aTN~p~~--LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~ 80 (147)
|...++.+... +..+||++|..|.. | |+|+- ||. ..+.+..|+.+.+..+++............++....
T Consensus 102 lf~l~N~~~e~--g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L 175 (214)
T PRK06620 102 LLHIFNIINEK--QKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFL 175 (214)
T ss_pred HHHHHHHHHhc--CCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 33444444444 55778888877775 5 77776 876 358889999999999998887644444444444443
No 107
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.30 E-value=4.3 Score=31.53 Aligned_cols=73 Identities=15% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCC---CCCccccCCCee--eeEEeecCCCHHHHHHHHHHHhCCCCCCChHH-HHH
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKN---RLDPALLRPGRM--DMHIHMSYCNPSGFRILVSNYLGINDHNLFPE-IDE 78 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~---~LD~Al~RpGRf--d~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i~~ 78 (147)
.|+..++.+... ...+||+|++.+. .+.+.|.. || ...|+++.|+...+..++..+..........+ +..
T Consensus 109 ~L~~~~~~~~~~--~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~ 184 (227)
T PRK08903 109 ALFNLFNRVRAH--GQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDY 184 (227)
T ss_pred HHHHHHHHHHHc--CCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 355556655443 3444555555432 24466664 66 47999999999999899887665444444443 344
Q ss_pred HHH
Q 042776 79 LLT 81 (147)
Q Consensus 79 l~~ 81 (147)
++.
T Consensus 185 L~~ 187 (227)
T PRK08903 185 LLT 187 (227)
T ss_pred HHH
Confidence 433
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=87.20 E-value=2.3 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.+.||..|+... ..+++|++|+.+..|.++|+. |+. .++|..++.++...++...+...
T Consensus 136 ~naLLK~LEepp----~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 136 FNALLKTIEEPP----PYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred HHHHHHhhccCC----CCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 456666666422 457788888889999999987 765 58899999999888888776433
No 109
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=86.99 E-value=2.1 Score=33.76 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=44.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCC---ccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLD---PALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDE 78 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD---~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~ 78 (147)
..|...++.+... ++.+||.+-..|..|. |.|.- ||. ..+.+..|+.+.|..|++.........+..++..
T Consensus 117 ~~lf~l~n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~ 192 (219)
T PF00308_consen 117 EELFHLFNRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIE 192 (219)
T ss_dssp HHHHHHHHHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHH
T ss_pred HHHHHHHHHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 3556666666555 5577777767777664 55555 665 3688889999999999998887665556665555
Q ss_pred HHH
Q 042776 79 LLT 81 (147)
Q Consensus 79 l~~ 81 (147)
...
T Consensus 193 ~l~ 195 (219)
T PF00308_consen 193 YLA 195 (219)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 110
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.96 E-value=1.1 Score=30.57 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCC--CCCceEEEEecCCCC--CCCccccCCCeeeeEEeec
Q 042776 4 SGLLNFIDGLWSS--CGDERIIVFTTNHKN--RLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 4 ~~lL~~lDgl~~~--~~~~vivi~aTN~p~--~LD~Al~RpGRfd~~i~~~ 50 (147)
.+++..+..+... ...++.+|++||.+. .+++.+.. ||+.+|.++
T Consensus 102 ~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 102 NALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred HHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 3455555555321 025678899999887 78888887 999888775
No 111
>PRK05642 DNA replication initiation factor; Validated
Probab=86.33 E-value=1.9 Score=34.24 Aligned_cols=57 Identities=16% Similarity=0.210 Sum_probs=41.1
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCC---CccccCCCeee--eEEeecCCCHHHHHHHHHHHh
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRL---DPALLRPGRMD--MHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~L---D~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l 65 (147)
+|...++.+... +..+||+++..|..+ .|.|.- ||- ..+.+..|+.+.+..+++...
T Consensus 118 ~Lf~l~n~~~~~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 118 ALFHLFNRLRDS--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHHHHhc--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 466666666554 556777777667555 578877 875 666778999999999998544
No 112
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=86.03 E-value=1.8 Score=36.44 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.|.||..|..-. ++.++|.+|+.|+.|.|.++- |.-. +.|+.|+.++....+....
T Consensus 123 aNaLLK~LEEPp----~~~~fiL~t~~~~~ll~TI~S--Rc~~-~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 123 ANALLKSLEEPS----GDTVLLLISHQPSRLLPTIKS--RCQQ-QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred HHHHHHHHhCCC----CCeEEEEEECChhhCcHHHHh--hcee-eeCCCcCHHHHHHHHHHhc
Confidence 466777776532 458888999999999999987 7766 8999999998888877654
No 113
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=85.75 E-value=1.1 Score=39.88 Aligned_cols=29 Identities=28% Similarity=0.369 Sum_probs=24.4
Q ss_pred CceEEEEecCCCC----CCCccccCCCeeeeEEeec
Q 042776 19 DERIIVFTTNHKN----RLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 19 ~~vivi~aTN~p~----~LD~Al~RpGRfd~~i~~~ 50 (147)
.++.||+|+|..+ .||+||+| ||.. |++.
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrR--RF~f-i~i~ 356 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRR--RFSF-IDIE 356 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHh--hhhe-EEec
Confidence 6699999999988 89999999 9954 4444
No 114
>PLN03025 replication factor C subunit; Provisional
Probab=85.63 E-value=3.3 Score=34.25 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=46.6
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHhccchHHHHHHHH
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL-FPEIDELLTKLMKSEVAEVALEGL 96 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~i~~l~~~l~~~~~~~~al~~~ 96 (147)
..+|++||.++.+.++|+. |+ ..+.|+.|+.++....+........... ...+..++. .+.++...|+..+
T Consensus 130 t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~--~~~gDlR~aln~L 201 (319)
T PLN03025 130 TRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIF--TADGDMRQALNNL 201 (319)
T ss_pred ceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHH
Confidence 4467788889999999987 66 4789999999999888887775544332 333444433 2334444444433
No 115
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=85.50 E-value=3.9 Score=38.86 Aligned_cols=60 Identities=13% Similarity=0.224 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.|.||..|+-.. ..+++|++|+.++.|-+.|+- |. ..|.|..++.+....+|..++....
T Consensus 137 ~NaLLK~LEEpP----~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il~~EG 196 (824)
T PRK07764 137 FNALLKIVEEPP----EHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERICAQEG 196 (824)
T ss_pred HHHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 366777777654 347788888889989888876 55 5788998888998888888775443
No 116
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.13 E-value=2 Score=38.96 Aligned_cols=60 Identities=10% Similarity=0.095 Sum_probs=44.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.|.||..|+--. +.+++|++||.|+.|.+.|+- |+ ..+.|..++.++....+..++....
T Consensus 136 ~naLLk~LEepp----~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 136 FNALLKTLEEPP----PHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred HHHHHHHHHcCC----CCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 456777777543 458888888999999999876 55 4678888888888888777665443
No 117
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=84.94 E-value=2.7 Score=35.98 Aligned_cols=57 Identities=12% Similarity=0.160 Sum_probs=43.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
.|.||..+..-. .+.++|.+|+.|+.|.|.++. |+ ..|.|+.|+.++..+++.....
T Consensus 158 anaLLK~LEepp----~~~~~IL~t~~~~~llpti~S--Rc-~~i~l~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 158 ANALLKVLEEPP----ARSLFLLVSHAPARLLPTIRS--RC-RKLRLRPLAPEDVIDALAAAGP 214 (365)
T ss_pred HHHHHHHHhcCC----CCeEEEEEECCchhchHHhhc--cc-eEEECCCCCHHHHHHHHHHhcc
Confidence 456676666433 347788899999999988866 65 5789999999999999887654
No 118
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=84.81 E-value=6.2 Score=33.57 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=37.6
Q ss_pred CceEEEEecCCCC------------CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN------------RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~------------~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
....||||+|..+ .|++|++- ||-..+.+++|+.+.-.+|+....
T Consensus 177 p~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 177 PAFRLFATANTIGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred CCeEEEEeeCCCCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 3466899999765 35788888 999999999999999999987664
No 119
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.56 E-value=4.1 Score=37.19 Aligned_cols=61 Identities=18% Similarity=0.333 Sum_probs=46.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||..|.-.. ..+++|++|+.++.|-++|+- |. ..++|..++.+....++..++.....
T Consensus 135 ~NALLK~LEEpp----~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 135 FNALLKIVEEPP----EHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred HHHHHHHHhcCC----CCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 456777777543 458888888999999999876 64 57899999989888888877765443
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.53 E-value=4.6 Score=37.09 Aligned_cols=58 Identities=14% Similarity=0.183 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.+.||..|+.-. ..+++|++|+.++.|-|+|+. |+ ..++|..++.++....+......
T Consensus 138 ~naLLK~LEePp----~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 138 FNALLKTLEEPP----PRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred HHHHHHHHhcCC----cCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHH
Confidence 466777787532 447777888889999999876 65 45788888777766666655543
No 121
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=84.37 E-value=5 Score=37.17 Aligned_cols=59 Identities=15% Similarity=0.273 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.|.||..|.--. +.+++|++|+.++.|-+.++- |+ ..++|..++.++....+...+...
T Consensus 136 ~NALLKtLEEPp----~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 136 FNALLKTLEEPP----EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred HHHHHHHHHcCC----CCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 456777666532 457777778889999999887 76 889999999999988888777443
No 122
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.54 E-value=3.4 Score=36.96 Aligned_cols=61 Identities=7% Similarity=0.111 Sum_probs=46.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||..|+.-. ..+++|++|+.++.|.+.++. |+ ..+.|..++.++....+...+.....
T Consensus 133 ~NaLLK~LEePp----~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~Egi 193 (491)
T PRK14964 133 FNALLKTLEEPA----PHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKENI 193 (491)
T ss_pred HHHHHHHHhCCC----CCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHcCC
Confidence 456777777543 447788888888999999887 66 55899989999988888887765443
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=83.07 E-value=5.7 Score=36.37 Aligned_cols=62 Identities=11% Similarity=0.146 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN 71 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~ 71 (147)
.|.||..|.... +.+++|++|+.++.|-+.++- |+ ..|.|..|+.++...++...+......
T Consensus 149 ~naLLKtLEePp----~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 149 FNALLKTLEEPP----PHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred HHHHHHHHHhCC----CCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 456666666543 447777788888888888876 66 579999999999998888887655433
No 124
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.55 E-value=6.3 Score=35.68 Aligned_cols=61 Identities=13% Similarity=0.153 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..|.-.. ..+.+|++|+.|..|.++++- |. ..++|..++.++....+...+.....
T Consensus 134 ~NALLK~LEEpp----~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 134 FNALLKTLEEPP----SYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred HHHHHHHHhhcC----CceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 356777777643 336677777888999999987 75 58899999999988888877765433
No 125
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=82.51 E-value=3.3 Score=38.74 Aligned_cols=61 Identities=8% Similarity=0.163 Sum_probs=46.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.+.||..|+... +.+.+|++||.+..|.+.++- |+ ..|.|..++.++...++...+.....
T Consensus 136 ~NALLKtLEEPp----~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 136 FNAMLKTLEEPP----EHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred HHHHHHHHHhCC----CCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456777777543 347788888889999988874 77 66778889999988888888765543
No 126
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.13 E-value=4.2 Score=38.01 Aligned_cols=59 Identities=12% Similarity=0.187 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.+.||..|+... ..+.+|++|+.+..+.+.++. |+ ..+.|..++..+....+...+...
T Consensus 135 ~NALLKtLEEPP----~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 135 FNALLKTLEEPP----EHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred HHHHHHHHhcCC----CCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 456777776532 446777888888889888876 77 678899999999888888777544
No 127
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.98 E-value=6.4 Score=37.99 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=44.3
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.+.||..|.--. ..+.+|++|+.+..|-+.|+. |+ ..+.|..++.++....+.+.+....
T Consensus 136 qNALLKtLEEPP----~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 136 FNALLKTLEEPP----EHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred HHHHHHHHhccC----CCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 456777776533 346677778888889888876 66 6789998999998888888775543
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.33 E-value=3.3 Score=37.12 Aligned_cols=59 Identities=10% Similarity=0.214 Sum_probs=43.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.|.||..|+... +.+++|++|+.|+.+.+.++- |. ..++|..++.++....+...+...
T Consensus 136 ~naLLK~LEepp----~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 136 FNAMLKTLEEPP----EHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred HHHHHHHHhCCC----CCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 466777777643 447777777888888888765 65 678999999999888887777543
No 129
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.95 E-value=6.9 Score=36.01 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||..|+.-. +.+++|++|+.|..+.+.++- |. ..++|..++.++....+...+.....
T Consensus 141 ~NaLLKtLEEPP----~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~i~~~egi 201 (618)
T PRK14951 141 FNAMLKTLEEPP----EYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQVLAAENV 201 (618)
T ss_pred HHHHHHhcccCC----CCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHHHHHHcCC
Confidence 345666555432 446777788888889888877 66 77899888888888888877755443
No 130
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=80.72 E-value=4.5 Score=35.56 Aligned_cols=60 Identities=10% Similarity=0.293 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecC-CCCC---CCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTN-HKNR---LDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN-~p~~---LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.+|...++.+... +.. +|+|+| .|.. |++.|.. ||. ..+.+..|+.+.|.+|+++.+...
T Consensus 226 e~lf~l~N~~~~~--~k~-iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~ 291 (450)
T PRK14087 226 EIFFTIFNNFIEN--DKQ-LFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQ 291 (450)
T ss_pred HHHHHHHHHHHHc--CCc-EEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhc
Confidence 3455556665443 334 445555 4544 4677777 775 556678899999999999888643
No 131
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=80.49 E-value=23 Score=29.10 Aligned_cols=55 Identities=9% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
|.||..|..-+ ++.++|.+|+.|+.|-|.++- |. ..++|..|+.++...++...+
T Consensus 111 naLLK~LEepp----~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 111 NAFLKTIEEPP----KGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHHHHhcCCC----CCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 45666666422 457777777889999999876 66 589999999999888877654
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.40 E-value=3.9 Score=37.99 Aligned_cols=62 Identities=19% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCCC--C-----CCceEEEEecCCCC-------------------------CCCccccCCCeeeeEEeec
Q 042776 3 LSGLLNFIDGLWSS--C-----GDERIIVFTTNHKN-------------------------RLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 3 v~~lL~~lDgl~~~--~-----~~~vivi~aTN~p~-------------------------~LD~Al~RpGRfd~~i~~~ 50 (147)
.+.||..||.-.-. . -.+.++|+|||... .+.|.++ +|||..|.|.
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~--~Rid~Vi~F~ 647 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFR--NRLDAIIHFN 647 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHH--hcCCeEEEcC
Confidence 35678888753110 0 13577999999642 1455665 4999999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 042776 51 YCNPSGFRILVSNYLG 66 (147)
Q Consensus 51 ~P~~~~r~~il~~~l~ 66 (147)
.-+.+....|++.++.
T Consensus 648 pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVD 663 (731)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999988774
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=79.29 E-value=11 Score=35.69 Aligned_cols=43 Identities=21% Similarity=0.277 Sum_probs=39.2
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.|++|+|.|..+.++.+|+- |++. |.++--+..+-.+|.+.||
T Consensus 466 ~VmFiaTANsl~tIP~PLlD--RMEi-I~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLD--RMEV-IRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred heEEEeecCccccCChHHhc--ceee-eeecCCChHHHHHHHHHhc
Confidence 59999999999999999998 9874 8888888999999999997
No 134
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=79.07 E-value=9.7 Score=34.55 Aligned_cols=59 Identities=12% Similarity=0.231 Sum_probs=42.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
.+.||..|.... +.+++|++|+.+..+-+.++- |. ..++|..++.++....+...+...
T Consensus 136 ~naLLK~LEepp----~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 136 FNALLKTLEEPP----EYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred HHHHHHHHhcCC----CCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 355777777533 346677777778888888776 66 789999999998888887766543
No 135
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.80 E-value=9.1 Score=34.69 Aligned_cols=60 Identities=10% Similarity=0.203 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.+.||..|+... ...++|++|+.++.+.+.+.. |+. .+.|..++..+...++..++....
T Consensus 137 ~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~~-~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 137 FNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RCQ-RFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred HHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--ccc-eeeCCCCCHHHHHHHHHHHHHHcC
Confidence 456777777643 346677777778888888876 654 588999998888888877765443
No 136
>PRK04132 replication factor C small subunit; Provisional
Probab=76.35 E-value=15 Score=35.19 Aligned_cols=57 Identities=5% Similarity=0.004 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
+.||..|+-.. ..+.+|++||.++.|-|+|+- |+ ..+.|..|+.++....+......
T Consensus 648 nALLk~lEep~----~~~~FILi~N~~~kIi~tIrS--RC-~~i~F~~ls~~~i~~~L~~I~~~ 704 (846)
T PRK04132 648 QALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS--RC-AIFRFRPLRDEDIAKRLRYIAEN 704 (846)
T ss_pred HHHHHHhhCCC----CCeEEEEEeCChhhCchHHhh--hc-eEEeCCCCCHHHHHHHHHHHHHh
Confidence 34555555432 447789999999999999987 76 67899999988888777766543
No 137
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.67 E-value=13 Score=34.01 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
.+.||..|+-.. +..++|++|+.+..|-++|+. |.. .+.|..++.+....++..++....
T Consensus 138 ~naLLK~LEepp----~~tifIL~tt~~~kIl~tI~S--Rc~-iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 138 FNAFLKTLEEPP----SYAIFILATTEKHKILPTILS--RCQ-IFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred HHHHHHHHhCCC----CCeEEEEEeCCchhchHHHHh--hhh-eeecCCCCHHHHHHHHHHHHHHcC
Confidence 355676676543 346677777778899999887 664 499999998888888877665443
No 138
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.60 E-value=8 Score=34.63 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=43.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||..|+-.. +.+.+|++|+.+..+-+.++- |+ ..++|..++..+....+...+.....
T Consensus 136 ~naLLk~LEepp----~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~egi 196 (509)
T PRK14958 136 FNALLKTLEEPP----SHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEENV 196 (509)
T ss_pred HHHHHHHHhccC----CCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456777776543 347777788888889888876 66 56788878888877777777654433
No 139
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=72.84 E-value=20 Score=31.40 Aligned_cols=93 Identities=15% Similarity=0.182 Sum_probs=56.4
Q ss_pred HHHHhhCCCCCCCCceEEEEecCCCCCCC---ccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHH
Q 042776 6 LLNFIDGLWSSCGDERIIVFTTNHKNRLD---PALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELL 80 (147)
Q Consensus 6 lL~~lDgl~~~~~~~vivi~aTN~p~~LD---~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~ 80 (147)
|...+..+... ++.+|+.+-..|..|. |-|.. ||. ..+.+..|+.+.|.+|+.............++....
T Consensus 197 fFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 197 FFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred HHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 34444444443 4466666666676655 78877 888 456677899999999999877666555555554443
Q ss_pred HHHhc--cchHHHHHHHHHHHHHH
Q 042776 81 TKLMK--SEVAEVALEGLVEFLKR 102 (147)
Q Consensus 81 ~~l~~--~~~~~~al~~~~~~l~~ 102 (147)
..-+. -...+.|+..+..+..-
T Consensus 273 a~~~~~nvReLegaL~~l~~~a~~ 296 (408)
T COG0593 273 AKRLDRNVRELEGALNRLDAFALF 296 (408)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHh
Confidence 32222 23345555555554433
No 140
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=72.61 E-value=4.4 Score=27.10 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=23.9
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCC
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCN 53 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~ 53 (147)
....+|+|||......+..+++ |++..+.+..|+
T Consensus 115 ~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 148 (148)
T smart00382 115 KNLTVILTTNDEKDLGPALLRR-RFDRRIVLLLIL 148 (148)
T ss_pred CCCEEEEEeCCCccCchhhhhh-ccceEEEecCCC
Confidence 5677889999744444555444 999999987653
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=71.11 E-value=20 Score=33.09 Aligned_cols=58 Identities=9% Similarity=0.143 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+.||..|+-.. ...++|++|+.++.|-++|.. |. ..|+|..++.++...++...+...
T Consensus 145 naLLK~LEePp----~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 145 NAFLKTLEEPP----PHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred HHHHHHHhCCC----CCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHHHHHHHHHc
Confidence 45666665533 336666677778899888876 54 578999999998888887766543
No 142
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=70.73 E-value=9.9 Score=34.84 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=32.7
Q ss_pred ceEEEEecCCC-CCCCccccCCCeeeeEEeecCCC-HHHHHHHHHHH
Q 042776 20 ERIIVFTTNHK-NRLDPALLRPGRMDMHIHMSYCN-PSGFRILVSNY 64 (147)
Q Consensus 20 ~vivi~aTN~p-~~LD~Al~RpGRfd~~i~~~~P~-~~~r~~il~~~ 64 (147)
.++||+|+|.. ..|.++|+. ||+.+|.++.|. .+.+.+++...
T Consensus 169 ~~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 169 RFVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred CeEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHH
Confidence 47788998843 368899999 999999998764 56677776643
No 143
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=70.01 E-value=12 Score=35.49 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=38.0
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..|++|||.|..+.|+|+|+- |++. |+++=-..++-..|.+.||
T Consensus 553 SkVLFicTAN~idtIP~pLlD--RMEv-IelsGYv~eEKv~IA~~yL 596 (906)
T KOG2004|consen 553 SKVLFICTANVIDTIPPPLLD--RMEV-IELSGYVAEEKVKIAERYL 596 (906)
T ss_pred hheEEEEeccccccCChhhhh--hhhe-eeccCccHHHHHHHHHHhh
Confidence 359999999999999999998 8875 6777667788889999887
No 144
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=68.71 E-value=22 Score=29.69 Aligned_cols=67 Identities=13% Similarity=0.219 Sum_probs=49.7
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCCCccc--------------------cCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRLDPAL--------------------LRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al--------------------~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
.|-..|||--+..-++|+|-+|+||-+.|..-. -=+.||--.+.|..|+.+.-..|+.+|
T Consensus 159 ~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~ 238 (287)
T COG2607 159 ALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHY 238 (287)
T ss_pred HHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHH
Confidence 355667875433337899999999988887332 124589999999999999999999988
Q ss_pred hCCCCCC
Q 042776 65 LGINDHN 71 (147)
Q Consensus 65 l~~~~~~ 71 (147)
......+
T Consensus 239 a~~~~l~ 245 (287)
T COG2607 239 AKHFGLD 245 (287)
T ss_pred HHHcCCC
Confidence 7544333
No 145
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=67.88 E-value=22 Score=33.42 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=34.4
Q ss_pred CceEEEEecC--CCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTN--HKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN--~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..+++|++|+ ....++++++. |. ..+.|+.++.+.+..+++.++.
T Consensus 136 g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 136 GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 3466777653 33578999987 54 4589999999999999998875
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=65.93 E-value=9 Score=36.33 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=35.9
Q ss_pred CceEEEEecCCCCC-------------------------CCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKNR-------------------------LDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~~-------------------------LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
.+.+||+|||.... +.|.|+- |||..|.|..++.+....|+..++.
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~ 777 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLG 777 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHH
Confidence 45789999997332 2355554 9999999999999999999887764
No 147
>PRK13531 regulatory ATPase RavA; Provisional
Probab=65.57 E-value=13 Score=33.42 Aligned_cols=60 Identities=22% Similarity=0.283 Sum_probs=39.2
Q ss_pred HHHHHHHh-hCCCCC-----CCCceEEEEecCCCCC---CCccccCCCeeeeEEeecCCC-HHHHHHHHHHH
Q 042776 3 LSGLLNFI-DGLWSS-----CGDERIIVFTTNHKNR---LDPALLRPGRMDMHIHMSYCN-PSGFRILVSNY 64 (147)
Q Consensus 3 v~~lL~~l-Dgl~~~-----~~~~vivi~aTN~p~~---LD~Al~RpGRfd~~i~~~~P~-~~~r~~il~~~ 64 (147)
-+.||..| ++.... +-..+++++|||.... ..+|+.- ||-.+|.+++|+ .+...+|+...
T Consensus 124 QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 124 LNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred HHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 46677777 332111 1134677888884322 3358998 999999999997 56668888754
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=65.29 E-value=57 Score=27.26 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
|.||..|.--. . .++|..|+.|+.|-|.++- |. ..|.|+.|+.+...+++.....
T Consensus 142 NaLLK~LEEPp----~-~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~~~~~~L~~~~~ 196 (314)
T PRK07399 142 NALLKTLEEPG----N-GTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDEQLEQVLKRLGD 196 (314)
T ss_pred HHHHHHHhCCC----C-CeEEEEECChHhCcHHHHh--hc-eEEecCCCCHHHHHHHHHHhhc
Confidence 45777776532 2 3567777899999999987 76 6789999999999999887643
No 149
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=64.92 E-value=13 Score=31.85 Aligned_cols=58 Identities=9% Similarity=0.167 Sum_probs=40.1
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+.||..|.-.. ...++|++|+.+..|-+++.. |.. .++|..++.++....+...+...
T Consensus 145 ~~LLk~LEep~----~~t~~Il~t~~~~kl~~tl~s--R~~-~v~f~~l~~~ei~~~l~~~~~~~ 202 (397)
T PRK14955 145 NAFLKTLEEPP----PHAIFIFATTELHKIPATIAS--RCQ-RFNFKRIPLEEIQQQLQGICEAE 202 (397)
T ss_pred HHHHHHHhcCC----CCeEEEEEeCChHHhHHHHHH--HHH-HhhcCCCCHHHHHHHHHHHHHHc
Confidence 45555555322 346666777778888888876 654 68898888888888877766443
No 150
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=63.57 E-value=8.4 Score=32.44 Aligned_cols=54 Identities=7% Similarity=0.148 Sum_probs=40.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
.+.||..|+-.. .+..+|.+|+.++.+.|.+.. |. ..+.|+.|+.+...+.|..
T Consensus 130 ~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 130 ANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 456777777653 336677799999999999876 55 5678889998887777754
No 151
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=62.70 E-value=15 Score=29.99 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=37.0
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN 71 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~ 71 (147)
..+|+||++...|.+.|+- ||-....+..-+.++...|+......-...
T Consensus 150 FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIE 198 (233)
T ss_dssp -EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-E
T ss_pred ceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCC
Confidence 5699999999999999998 999999999999999999998665544333
No 152
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=61.38 E-value=21 Score=30.17 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=41.1
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
|.||..|.-= ..+.++|..|+.|+.|-|.++- |.- .+.|+.|+.+...+.+..
T Consensus 126 NaLLKtLEEP----p~~t~fiL~t~~~~~lLpTI~S--RCq-~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 126 NALLKTLEEP----APNCLFLLVTHNQKRLLPTIVS--RCQ-QWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHHHhcCC----CCCeEEEEEECChhhChHHHHh--cce-eEeCCCCCHHHHHHHHHH
Confidence 5677776652 2558888899999999999876 664 688999999988887764
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.12 E-value=11 Score=35.79 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=36.5
Q ss_pred ceEEEEecCCCC-------------------------CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 20 ERIIVFTTNHKN-------------------------RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 20 ~vivi~aTN~p~-------------------------~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.+||+|||... .+.|+|+. |+|..|.|..++.+....|++.++.
T Consensus 711 n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 711 NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 457899999731 24577887 9999999999999999999887774
No 154
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=61.07 E-value=23 Score=30.64 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=34.9
Q ss_pred eEEEEecCCC-------CCCCccccCCCeeeeEEeecCCCH-HHHHHHHHHHhCCC
Q 042776 21 RIIVFTTNHK-------NRLDPALLRPGRMDMHIHMSYCNP-SGFRILVSNYLGIN 68 (147)
Q Consensus 21 vivi~aTN~p-------~~LD~Al~RpGRfd~~i~~~~P~~-~~r~~il~~~l~~~ 68 (147)
.+||++||-. ...-.||++ |+. .|.+++|.. ..-.+|.++.++.+
T Consensus 278 ~liia~sNe~e~~~~~~~k~~eaf~d--R~~-~i~vpY~l~~~~E~~Iy~k~~~~s 330 (361)
T smart00763 278 GLIIAHSNESEWQRFKSNKKNEALLD--RII-KVKVPYCLRVSEEAQIYEKLLRNS 330 (361)
T ss_pred eEEEEeCCHHHHhhhhccccchhhhh--ceE-EEeCCCcCCHHHHHHHHHHHhccC
Confidence 5789999977 366899999 999 889987754 45677877777643
No 155
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=60.51 E-value=55 Score=32.07 Aligned_cols=57 Identities=14% Similarity=0.031 Sum_probs=37.8
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
.|.-||.||. |..+++...+|+.+++..|+.++..++|..+.....++ ...+.+++.
T Consensus 323 ~GsrIIiTTr-----d~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~ 379 (1153)
T PLN03210 323 SGSRIIVITK-----DKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELAS 379 (1153)
T ss_pred CCcEEEEEeC-----cHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHH
Confidence 3455677777 44555545578899999999999999998876543332 233444444
No 156
>PHA02244 ATPase-like protein
Probab=58.90 E-value=15 Score=31.98 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=27.8
Q ss_pred CceEEEEecCCC-----------CCCCccccCCCeeeeEEeecCCCHH
Q 042776 19 DERIIVFTTNHK-----------NRLDPALLRPGRMDMHIHMSYCNPS 55 (147)
Q Consensus 19 ~~vivi~aTN~p-----------~~LD~Al~RpGRfd~~i~~~~P~~~ 55 (147)
.+.-+|+|+|.+ ..|++|++- ||- .|+|++|+..
T Consensus 220 ~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv-~I~~dyp~~~ 264 (383)
T PHA02244 220 EDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFA-PIEFDYDEKI 264 (383)
T ss_pred CCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcE-EeeCCCCcHH
Confidence 456799999973 688999999 995 6999999843
No 157
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=52.65 E-value=30 Score=28.91 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=38.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
|.||..|+--+ +..++|++|+.+..|-|+++- |. ..++|..|+.++...++..
T Consensus 128 NaLLK~LEEPp----~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 128 NSLLKFLEEPS----GGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred HHHHHHhcCCC----CCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 45666666532 457777788889999999876 54 4588888888887777754
No 158
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=52.07 E-value=29 Score=29.25 Aligned_cols=54 Identities=13% Similarity=0.035 Sum_probs=42.1
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
|.||-.|.- |..+.++|.+|++|+.|-|-++- |.- .+.|+.|+.+...+.+...
T Consensus 126 NaLLKtLEE----Pp~~t~fiL~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 126 NALLKTLEE----PPENTWFFLACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred HHHHHHhcC----CCCCeEEEEEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHHc
Confidence 566666664 22668889999999999999987 766 5799999998888877543
No 159
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=51.49 E-value=27 Score=31.96 Aligned_cols=60 Identities=23% Similarity=0.297 Sum_probs=39.7
Q ss_pred ceEEEEecCCC--CCCCccccCCCeee---eEEeec--CCC-HHHHHHHHHHHh------CCCCCCChHHHHHHHH
Q 042776 20 ERIIVFTTNHK--NRLDPALLRPGRMD---MHIHMS--YCN-PSGFRILVSNYL------GINDHNLFPEIDELLT 81 (147)
Q Consensus 20 ~vivi~aTN~p--~~LD~Al~RpGRfd---~~i~~~--~P~-~~~r~~il~~~l------~~~~~~~~~~i~~l~~ 81 (147)
.+.||+++|.. ..+||+|+. ||+ .+++|+ .|+ .+.+..+++.+. +..++.....+++++.
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~--rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~ 341 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRS--RIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVR 341 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHH--HhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHH
Confidence 46789999964 679999999 999 777775 344 455555543222 2234556667777776
No 160
>PRK14700 recombination factor protein RarA; Provisional
Probab=51.43 E-value=1.1e+02 Score=25.91 Aligned_cols=77 Identities=14% Similarity=0.156 Sum_probs=50.8
Q ss_pred CceEEEEec--CCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC------CCCChH-HHHHHHHHHhccchH
Q 042776 19 DERIIVFTT--NHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN------DHNLFP-EIDELLTKLMKSEVA 89 (147)
Q Consensus 19 ~~vivi~aT--N~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~------~~~~~~-~i~~l~~~l~~~~~~ 89 (147)
+.+++|+|| |.-..|.|||+- |. +.+.|...+.+....+++.-+... ...... .+..+ .-++.+|.
T Consensus 7 G~i~LIGATTENP~f~vn~ALlS--R~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~i--a~~a~GDa 81 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVS--RL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAM--HNYNEGDC 81 (300)
T ss_pred CcEEEEeecCCCccceecHhhhh--hh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHH--HHhcCCHH
Confidence 568888876 466789999998 87 778899999999999988777531 111222 22222 22355666
Q ss_pred HHHHHHHHHHH
Q 042776 90 EVALEGLVEFL 100 (147)
Q Consensus 90 ~~al~~~~~~l 100 (147)
-.||..+-.++
T Consensus 82 R~aLN~LE~a~ 92 (300)
T PRK14700 82 RKILNLLERMF 92 (300)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 161
>CHL00095 clpC Clp protease ATP binding subunit
Probab=51.42 E-value=41 Score=31.80 Aligned_cols=26 Identities=15% Similarity=0.109 Sum_probs=22.7
Q ss_pred CeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 41 GRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 41 GRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+|+|..|.|...+.+...+|+...+.
T Consensus 708 nRid~ii~F~pL~~~~l~~Iv~~~l~ 733 (821)
T CHL00095 708 NRLDEIIVFRQLTKNDVWEIAEIMLK 733 (821)
T ss_pred ccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 49999999999999999999887764
No 162
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=49.21 E-value=42 Score=32.05 Aligned_cols=31 Identities=26% Similarity=0.268 Sum_probs=24.7
Q ss_pred CCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 33 LDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 33 LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.|+++- |+| .|.|...+.+....|+...+.
T Consensus 751 f~PEfln--Ri~-iI~F~pLs~e~l~~Iv~~~L~ 781 (852)
T TIGR03345 751 FKPAFLG--RMT-VIPYLPLDDDVLAAIVRLKLD 781 (852)
T ss_pred ccHHHhc--cee-EEEeCCCCHHHHHHHHHHHHH
Confidence 4456665 998 789999999999999887764
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=47.40 E-value=42 Score=28.29 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=40.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
-|.||..|.--. .+.++|.+|+.|+.|-|.++- |.- .|.|+.|+.++..+.+..
T Consensus 130 aNaLLKtLEEPp----~~~~fiL~~~~~~~lLpTIrS--RCq-~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 130 CNALLKTLEEPS----PGRYLWLISAQPARLPATIRS--RCQ-RLEFKLPPAHEALAWLLA 183 (319)
T ss_pred HHHHHHHhhCCC----CCCeEEEEECChhhCchHHHh--hhe-EeeCCCcCHHHHHHHHHH
Confidence 366777666532 457788888999999999976 664 467888998888877764
No 164
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=46.14 E-value=75 Score=27.86 Aligned_cols=23 Identities=9% Similarity=0.280 Sum_probs=19.4
Q ss_pred CeeeeEEeecCCCHHHHHHHHHH
Q 042776 41 GRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 41 GRfd~~i~~~~P~~~~r~~il~~ 63 (147)
||+|..+.|..-+.+...+|+..
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTK 329 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHH
Confidence 69999999988888888888764
No 165
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=42.72 E-value=61 Score=27.39 Aligned_cols=55 Identities=9% Similarity=0.055 Sum_probs=40.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
-|.||-.|.-= ..++++|.+|+.|+.|-|.++- |. ..+.|..|+.+...+.|...
T Consensus 124 aNaLLKtLEEP----p~~~~fiL~t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 124 ANALLKTLEEP----RPNTYFLLQADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred HHHHHHHhcCC----CCCeEEEEEECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 35666666642 2568888899999999999875 54 35788888888888777654
No 166
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=41.90 E-value=1.8e+02 Score=26.42 Aligned_cols=49 Identities=8% Similarity=0.149 Sum_probs=36.3
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
..|++|+||.-|+.+.+-++- |.- ++.|..-+.+.....+..++..+..
T Consensus 148 ~hV~FIlATTe~~Kip~TIlS--Rcq-~f~fkri~~~~I~~~L~~i~~~E~I 196 (515)
T COG2812 148 SHVKFILATTEPQKIPNTILS--RCQ-RFDFKRLDLEEIAKHLAAILDKEGI 196 (515)
T ss_pred cCeEEEEecCCcCcCchhhhh--ccc-cccccCCCHHHHHHHHHHHHHhcCC
Confidence 568899999999999999876 542 3556666777777777777765533
No 167
>CHL00195 ycf46 Ycf46; Provisional
Probab=41.26 E-value=1.1e+02 Score=27.44 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=36.0
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC-CChHHHHHHHHH
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH-NLFPEIDELLTK 82 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~-~~~~~i~~l~~~ 82 (147)
..+||.+.+ -.|++.|-+ +=..+.+++|+.++...+++.+...... .....++.++..
T Consensus 115 ~~~i~~~~~--~~~p~el~~---~~~~~~~~lP~~~ei~~~l~~~~~~~~~~~~~~~~~~l~~~ 173 (489)
T CHL00195 115 KTIIIIASE--LNIPKELKD---LITVLEFPLPTESEIKKELTRLIKSLNIKIDSELLENLTRA 173 (489)
T ss_pred CEEEEEcCC--CCCCHHHHh---ceeEEeecCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 345555543 345555543 3356899999999999999887653322 234456666663
No 168
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=39.48 E-value=10 Score=21.06 Aligned_cols=9 Identities=67% Similarity=0.929 Sum_probs=6.8
Q ss_pred ccccCCCee
Q 042776 35 PALLRPGRM 43 (147)
Q Consensus 35 ~Al~RpGRf 43 (147)
-||+||-||
T Consensus 21 ~ALlrPErF 29 (29)
T PRK14759 21 YALLRPERF 29 (29)
T ss_pred HHHhCcccC
Confidence 367888886
No 169
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=38.78 E-value=54 Score=27.47 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=27.4
Q ss_pred eEEEEecCCCC-------------CCCccccCCCeeeeEEee-cCCCHHHHHHHHHHHhC
Q 042776 21 RIIVFTTNHKN-------------RLDPALLRPGRMDMHIHM-SYCNPSGFRILVSNYLG 66 (147)
Q Consensus 21 vivi~aTN~p~-------------~LD~Al~RpGRfd~~i~~-~~P~~~~r~~il~~~l~ 66 (147)
--|+||+|... .++++|+- |||-.+.+ +.|+.+.=..|.++.+.
T Consensus 165 ~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 165 CSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp -EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred hhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 45889999665 58899998 99988765 68887776666665554
No 170
>PRK09862 putative ATP-dependent protease; Provisional
Probab=37.31 E-value=36 Score=30.65 Aligned_cols=35 Identities=23% Similarity=0.364 Sum_probs=28.1
Q ss_pred CceEEEEecCCCC---------------------CCCccccCCCeeeeEEeecCCCHH
Q 042776 19 DERIIVFTTNHKN---------------------RLDPALLRPGRMDMHIHMSYCNPS 55 (147)
Q Consensus 19 ~~vivi~aTN~p~---------------------~LD~Al~RpGRfd~~i~~~~P~~~ 55 (147)
....+|+|+|... .|.++++- |||.++.++.|+..
T Consensus 336 a~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 336 ARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred CCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 3467999999642 46778887 99999999999866
No 171
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=37.19 E-value=81 Score=30.12 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=43.3
Q ss_pred HHHHHHHhhCCCCCCC-------CceEEEEecCCCCC----------------------------CCccccCCCeeeeEE
Q 042776 3 LSGLLNFIDGLWSSCG-------DERIIVFTTNHKNR----------------------------LDPALLRPGRMDMHI 47 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~-------~~vivi~aTN~p~~----------------------------LD~Al~RpGRfd~~i 47 (147)
+|-||+.||-=.-..+ .+.+||||||--.. +-|+++. |+|..|
T Consensus 610 ~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II 687 (786)
T COG0542 610 FNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEII 687 (786)
T ss_pred HHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEE
Confidence 4678888874321111 24789999993311 2255555 999999
Q ss_pred eecCCCHHHHHHHHHHHhC
Q 042776 48 HMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 48 ~~~~P~~~~r~~il~~~l~ 66 (147)
.|..-+.+...+|+..++.
T Consensus 688 ~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 688 PFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred eccCCCHHHHHHHHHHHHH
Confidence 9999999999999887764
No 172
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=36.86 E-value=1.8e+02 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=40.4
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
..+|+||.+.-.|-.-|+- ||-....+..-+.++...|+...-..-
T Consensus 152 FTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l 197 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKIL 197 (332)
T ss_pred eeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHh
Confidence 5689999999999999998 999999999999999999998765433
No 173
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=36.00 E-value=59 Score=29.78 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=33.4
Q ss_pred cHHHHHHHhh---------CCCCCCCCceEEEEecCCC---CCCCccccCCCeeeeEEeecCCCHHH
Q 042776 2 TLSGLLNFID---------GLWSSCGDERIIVFTTNHK---NRLDPALLRPGRMDMHIHMSYCNPSG 56 (147)
Q Consensus 2 tv~~lL~~lD---------gl~~~~~~~vivi~aTN~p---~~LD~Al~RpGRfd~~i~~~~P~~~~ 56 (147)
+++.|+.-|+ |..-..-...+||+|-|.. ..|.++++- ||+.+|.++.|+..+
T Consensus 109 ~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v~~~~~~~ 173 (584)
T PRK13406 109 TAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDLDGLALRD 173 (584)
T ss_pred HHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEcCCCChHH
Confidence 3556666664 3322211345566653322 448889998 999999999877654
No 174
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.16 E-value=1.8e+02 Score=26.49 Aligned_cols=91 Identities=12% Similarity=-0.027 Sum_probs=60.4
Q ss_pred hCCCCCCCCceEEEEecCCCCCCCccccC----CCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC--hHHHHHHHHHH-
Q 042776 11 DGLWSSCGDERIIVFTTNHKNRLDPALLR----PGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL--FPEIDELLTKL- 83 (147)
Q Consensus 11 Dgl~~~~~~~vivi~aTN~p~~LD~Al~R----pGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~--~~~i~~l~~~l- 83 (147)
+-+...++..+++|+-.|-.+.=|..|.| -+--...+.|+.-+.++...||..-+...+... ...++-+|...
T Consensus 280 Fewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKva 359 (529)
T KOG2227|consen 280 FEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVA 359 (529)
T ss_pred hhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhc
Confidence 33444556778899999998888888854 244668899999999999999998887654332 22455555522
Q ss_pred hccchHHHHHHHHHHHHH
Q 042776 84 MKSEVAEVALEGLVEFLK 101 (147)
Q Consensus 84 ~~~~~~~~al~~~~~~l~ 101 (147)
..++|.-.|+.-...+++
T Consensus 360 a~SGDlRkaLdv~R~aiE 377 (529)
T KOG2227|consen 360 APSGDLRKALDVCRRAIE 377 (529)
T ss_pred cCchhHHHHHHHHHHHHH
Confidence 235565555554444443
No 175
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=33.47 E-value=1.1e+02 Score=27.13 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=36.2
Q ss_pred hhCCCCCCCCceEEEEecC-CCCCCCccccCCCeeeeEEeecCC-CHHHHHHHHHHHh
Q 042776 10 IDGLWSSCGDERIIVFTTN-HKNRLDPALLRPGRMDMHIHMSYC-NPSGFRILVSNYL 65 (147)
Q Consensus 10 lDgl~~~~~~~vivi~aTN-~p~~LD~Al~RpGRfd~~i~~~~P-~~~~r~~il~~~l 65 (147)
.+|+.-..--.+++|+|+| .-..|=|-|+- ||...|.+..| +.+.|.+|...-+
T Consensus 177 reGisi~hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 177 REGISIRHPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred eCceeeccCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHH
Confidence 3555433335688899999 33456677776 99999999865 4556777776444
No 176
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=33.12 E-value=1.1e+02 Score=25.58 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=37.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
|.||..|.--+ +..++|.+|+.|+.|-|.++- |. ..++|..|+.+.....+..
T Consensus 108 NaLLK~LEEPp----~~t~~il~~~~~~kll~TI~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 108 NALLKTIEEPP----KDTYFLLTTKNINKVLPTIVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHHHHHhhCCC----CCeEEEEEeCChHhChHHHHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 55677776633 447777777788999998765 43 3488888888887766654
No 177
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=32.76 E-value=1.1e+02 Score=25.54 Aligned_cols=52 Identities=25% Similarity=0.323 Sum_probs=34.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVS 62 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~ 62 (147)
-|.||..|.-= ..+.++|..|+.++.|-|-++- |. ..|+|+. +.+...+++.
T Consensus 121 aNaLLKtLEEP----p~~t~~iL~t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 121 ANSLLKVIEEP----QSEIYIFLLTNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred HHHHHHHhcCC----CCCeEEEEEECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 35667766652 2457788888889999999876 65 5577755 4455555554
No 178
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=32.55 E-value=35 Score=25.26 Aligned_cols=23 Identities=13% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEecCCCCCCCccccCCCee
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRM 43 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRf 43 (147)
=+||.||..+..+++..++||-+
T Consensus 73 DIVvsAtg~~~~i~~~~ikpGa~ 95 (140)
T cd05212 73 DVVVVGSPKPEKVPTEWIKPGAT 95 (140)
T ss_pred CEEEEecCCCCccCHHHcCCCCE
Confidence 35778888889999999999985
No 179
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=31.16 E-value=2e+02 Score=25.03 Aligned_cols=22 Identities=9% Similarity=0.256 Sum_probs=19.6
Q ss_pred CeeeeEEeecCCCHHHHHHHHH
Q 042776 41 GRMDMHIHMSYCNPSGFRILVS 62 (147)
Q Consensus 41 GRfd~~i~~~~P~~~~r~~il~ 62 (147)
||||..+.|..-+.+....|+.
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHH
Confidence 7999999999999999888886
No 180
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=30.50 E-value=2.8e+02 Score=22.16 Aligned_cols=66 Identities=14% Similarity=0.209 Sum_probs=41.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeee------------eEEeecCCCHHHHHHHHHHHhCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMD------------MHIHMSYCNPSGFRILVSNYLGINDH 70 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd------------~~i~~~~P~~~~r~~il~~~l~~~~~ 70 (147)
.|.||-.+.. + ..++++|.+|..|..|-|-++- |+- ..+.+..-+..+....+.. +.....
T Consensus 71 ~NaLLK~LEE---P-p~~~~fiL~t~~~~~llpTI~S--Rc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~ 143 (206)
T PRK08485 71 QNALLKILEE---P-PKNICFIIVAKSKNLLLPTIRS--RLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENK 143 (206)
T ss_pred HHHHHHHhcC---C-CCCeEEEEEeCChHhCchHHHh--hheeccccccccccccccccCCCCHHHHHHHHHH-HHHccc
Confidence 3556666654 2 2557777777778989888865 543 2466667777777777776 443333
Q ss_pred CChHH
Q 042776 71 NLFPE 75 (147)
Q Consensus 71 ~~~~~ 75 (147)
....+
T Consensus 144 ~~~~e 148 (206)
T PRK08485 144 LSKEE 148 (206)
T ss_pred ccHHH
Confidence 33333
No 181
>COG3378 Phage associated DNA primase [General function prediction only]
Probab=27.65 E-value=1.2e+02 Score=27.55 Aligned_cols=42 Identities=21% Similarity=0.223 Sum_probs=25.4
Q ss_pred ceEEEEecCCCCC---CCccccCCCeeeeEEee--cCCCHHHHHHHHHHH
Q 042776 20 ERIIVFTTNHKNR---LDPALLRPGRMDMHIHM--SYCNPSGFRILVSNY 64 (147)
Q Consensus 20 ~vivi~aTN~p~~---LD~Al~RpGRfd~~i~~--~~P~~~~r~~il~~~ 64 (147)
.-++|++||++-. -|.|++| |+= .|.| ..|+.+....+-+..
T Consensus 326 ~a~~i~~~N~~P~~~~~d~ai~r--R~~-ivpF~~~f~~~~~d~~l~~kl 372 (517)
T COG3378 326 NAKLIQATNHPPRIRGDDEAIWR--RLL-IVPFEKQFPPAERDDKLDEKL 372 (517)
T ss_pred ceeEEeecCCCCcccccchhhhh--eeE-EEeccccCCCcccchhhhHHH
Confidence 3678999997644 4899998 742 2333 356655544444333
No 182
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=26.67 E-value=65 Score=26.68 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeec
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~ 50 (147)
+.||-..++.+..+|.+.+||+.|-| |-+|+.-.+-|=-.=-.+++.
T Consensus 138 vdQL~~vI~~ik~NP~drRIimsAwN-P~dl~~malpPCH~~~QFyV~ 184 (293)
T KOG0673|consen 138 VDQLADVINKIKNNPDDRRIIMSAWN-PLDLGKMALPPCHTFCQFYVA 184 (293)
T ss_pred HHHHHHHHHHHhcCCccceeeeeccC-ccccccccCCccceeeEEEec
Confidence 67899999999988889999999988 555543333333322334443
No 183
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=26.01 E-value=23 Score=18.89 Aligned_cols=8 Identities=75% Similarity=1.174 Sum_probs=5.8
Q ss_pred cccCCCee
Q 042776 36 ALLRPGRM 43 (147)
Q Consensus 36 Al~RpGRf 43 (147)
||+||.||
T Consensus 18 aLl~PErF 25 (25)
T PF09604_consen 18 ALLRPERF 25 (25)
T ss_pred HHhCcccC
Confidence 67777776
No 184
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=25.52 E-value=55 Score=26.72 Aligned_cols=43 Identities=21% Similarity=0.410 Sum_probs=27.5
Q ss_pred ceEEEEecCCC---CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 20 ERIIVFTTNHK---NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p---~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
++.+|+|+|.+ ..|.+.++| .|- .+.++.|+.+....|+..++
T Consensus 148 ~i~~vaa~~p~~Gr~~is~R~~r--~f~-i~~~~~p~~~sl~~If~~il 193 (272)
T PF12775_consen 148 DIQFVAAMNPTGGRNPISPRFLR--HFN-ILNIPYPSDESLNTIFSSIL 193 (272)
T ss_dssp SEEEEEEESSTTT--SHHHHHHT--TEE-EEE----TCCHHHHHHHHHH
T ss_pred eeEEEEecCCCCCCCCCChHHhh--heE-EEEecCCChHHHHHHHHHHH
Confidence 57788888742 247777776 554 68889999999888877655
No 185
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.47 E-value=3.4e+02 Score=23.97 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=34.0
Q ss_pred CceEEEEecC----CCCCCCccccCCCeeeeEEeecCCCHHHHHHHH
Q 042776 19 DERIIVFTTN----HKNRLDPALLRPGRMDMHIHMSYCNPSGFRILV 61 (147)
Q Consensus 19 ~~vivi~aTN----~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il 61 (147)
+.+++|++-. .|++|=|.|- |||.-++++..-+.+....||
T Consensus 301 dHILFIasGAFh~sKPSDLiPELQ--GRfPIRVEL~~Lt~~Df~rIL 345 (444)
T COG1220 301 DHILFIASGAFHVAKPSDLIPELQ--GRFPIRVELDALTKEDFERIL 345 (444)
T ss_pred ceEEEEecCceecCChhhcChhhc--CCCceEEEcccCCHHHHHHHH
Confidence 5677887643 7999999986 699999999999988888775
No 186
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=23.99 E-value=3e+02 Score=23.98 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=24.3
Q ss_pred ceEEEEecCCC--------CCCCccccCCCeeeeEEeec--CCCHHHHHHHHHHHhCCC
Q 042776 20 ERIIVFTTNHK--------NRLDPALLRPGRMDMHIHMS--YCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 20 ~vivi~aTN~p--------~~LD~Al~RpGRfd~~i~~~--~P~~~~r~~il~~~l~~~ 68 (147)
.-+||+||||- +.+.|-=+-|.-+|+.+-+. .-+.++.++|++.-...+
T Consensus 325 aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~~Ra~~E 383 (456)
T KOG1942|consen 325 APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIKIRAQVE 383 (456)
T ss_pred CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHHHHHhhh
Confidence 35688999962 22223333333445544432 334455556665555443
No 187
>PF12846 AAA_10: AAA-like domain
Probab=21.55 E-value=65 Score=25.12 Aligned_cols=46 Identities=13% Similarity=0.229 Sum_probs=36.1
Q ss_pred CceEEEEecCCCCCCC-----ccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 19 DERIIVFTTNHKNRLD-----PALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD-----~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
-++.++++|-.|..|+ ++++- -+...|.+.+++..... +..+++..
T Consensus 252 ~g~~~~l~tQ~~~~l~~~~~~~~i~~--n~~~~i~~~~~~~~~~~--l~~~~gl~ 302 (304)
T PF12846_consen 252 YGVGLILATQSPSDLPKSPIEDAILA--NCNTKIIFRLEDSDDAE--LAELFGLT 302 (304)
T ss_pred cCCEEEEeeCCHHHHhccchHHHHHH--hCCcEEEecCChHHHHH--HHHHcCcC
Confidence 3567889999999999 78887 88899999999877776 55555543
No 188
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=21.38 E-value=1.2e+02 Score=23.70 Aligned_cols=51 Identities=18% Similarity=0.283 Sum_probs=35.5
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCC----ccc------cCCCeeeeEEeecCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLD----PAL------LRPGRMDMHIHMSYCN 53 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD----~Al------~RpGRfd~~i~~~~P~ 53 (147)
++|+-..++.+...++..+.|+.+-|..++.+ |++ +|-|+++..+++..-|
T Consensus 92 ~dQl~~vI~~Lk~~p~sRR~i~~~w~p~~d~~~~~~PC~~~~qf~vr~g~L~~~~~~RS~D 152 (199)
T TIGR03283 92 IDQIDYIIERLNQSPNSRRAIAITWDPPQDIKVDEVPCLQLVQFLIRDNKLYLTAFFRSND 152 (199)
T ss_pred hhHHHHHHHHHhcCCCccceeEEEECcchhcccCCCCCcEEEEEEEeCCEEEEEEEEhhhh
Confidence 57888888999888878888777777554433 333 4678888887775444
No 189
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=21.21 E-value=3.7e+02 Score=22.39 Aligned_cols=58 Identities=12% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.|.||-.+.. + ..+.++|..|..++.|-|-++- |. ..+.|..|+...-.++...++..
T Consensus 106 ANALLKtLEE---P-P~~t~fILit~~~~~LLpTIrS--RC-q~i~~~~p~~~~~~e~~~~~~~p 163 (263)
T PRK06581 106 ANSCLKILED---A-PKNSYIFLITSRAASIISTIRS--RC-FKINVRSSILHAYNELYSQFIQP 163 (263)
T ss_pred HHHHHHhhcC---C-CCCeEEEEEeCChhhCchhHhh--ce-EEEeCCCCCHHHHHHHHHHhccc
Confidence 3556666654 2 2557777777788999888875 54 35778889888888877777653
No 190
>PF03843 Slp: Outer membrane lipoprotein Slp family; InterPro: IPR004658 Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli (which also contains a close paralog), Haemophilus influenzae and Pasteurella multocida and Vibrio cholerae. The known members of the family to date share a motif LX[GA]C near the N terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N terminus. Slp from E. coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.; GO: 0019867 outer membrane
Probab=21.14 E-value=91 Score=23.60 Aligned_cols=23 Identities=35% Similarity=0.654 Sum_probs=17.3
Q ss_pred CCceEEEEecCCCCCCCccccCCCee
Q 042776 18 GDERIIVFTTNHKNRLDPALLRPGRM 43 (147)
Q Consensus 18 ~~~vivi~aTN~p~~LD~Al~RpGRf 43 (147)
+.|+|++-. +.-|||++.++||.
T Consensus 74 s~GRFla~~---~gFLDP~~y~~Gr~ 96 (160)
T PF03843_consen 74 SQGRFLARV---PGFLDPAIYAPGRL 96 (160)
T ss_pred CCCEEEEEe---CCCcCHHHcCCCCE
Confidence 367876554 45699999999994
No 191
>PF13438 DUF4113: Domain of unknown function (DUF4113)
Probab=21.08 E-value=61 Score=19.86 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNH 29 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~ 29 (147)
..|+..||.+....|.+.|.+|++..
T Consensus 2 ~~LM~~iD~iN~r~G~~~i~~a~~g~ 27 (52)
T PF13438_consen 2 QRLMQAIDAINRRFGRGTIRLASQGF 27 (52)
T ss_pred hHHHHHHHHHHHhcCCCEEEEeECCC
Confidence 36889999998887888888888753
No 192
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=21.08 E-value=3.9e+02 Score=23.64 Aligned_cols=67 Identities=19% Similarity=0.188 Sum_probs=44.5
Q ss_pred CceEEEEecCCCCCCCccccC-----------CCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhc
Q 042776 19 DERIIVFTTNHKNRLDPALLR-----------PGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLTKLMK 85 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~R-----------pGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~~l~~ 85 (147)
..++|.-.||.-+..+.-+-| -||+||.+-+-=|-...-..+...|+...+..+++-+..|...+.|
T Consensus 141 aDviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sDyelisAl~~~l~G 218 (429)
T COG1029 141 ADVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSDYELISALRAALHG 218 (429)
T ss_pred ccEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCcHHHHHHHHHHhcC
Confidence 457888899977766654443 4799998876555545555555777777777777766666554443
Done!