Query 042776
Match_columns 147
No_of_seqs 166 out of 1802
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 16:20:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/042776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.9 2.7E-22 9.3E-27 171.0 8.2 100 2-103 271-373 (405)
2 4b4t_I 26S protease regulatory 99.9 7.8E-22 2.7E-26 169.5 8.1 100 2-103 305-407 (437)
3 4b4t_L 26S protease subunit RP 99.8 1.3E-21 4.3E-26 168.3 8.1 100 2-103 304-406 (437)
4 4b4t_M 26S protease regulatory 99.8 1.7E-21 5.8E-26 167.3 8.2 99 2-102 304-405 (434)
5 4b4t_H 26S protease regulatory 99.8 4.5E-21 1.5E-25 165.9 8.3 101 2-104 332-435 (467)
6 4b4t_K 26S protease regulatory 99.8 3.7E-21 1.3E-25 164.9 7.7 100 2-103 295-398 (428)
7 3cf2_A TER ATPase, transitiona 99.8 2.7E-20 9.1E-25 169.9 5.8 100 3-104 601-703 (806)
8 3cf2_A TER ATPase, transitiona 99.7 5.1E-17 1.7E-21 148.3 7.3 101 3-105 325-428 (806)
9 2x8a_A Nuclear valosin-contain 99.6 2.9E-16 1E-20 126.3 7.4 99 3-103 131-237 (274)
10 3cf0_A Transitional endoplasmi 99.5 1.6E-14 5.6E-19 116.7 9.1 98 3-102 139-239 (301)
11 2ce7_A Cell division protein F 99.5 2.8E-14 9.4E-19 123.6 7.7 97 2-100 138-237 (476)
12 1lv7_A FTSH; alpha/beta domain 99.5 2.7E-13 9.3E-18 106.1 9.8 96 3-100 135-233 (257)
13 1ixz_A ATP-dependent metallopr 99.4 3.9E-13 1.3E-17 105.1 9.2 96 3-100 139-237 (254)
14 2dhr_A FTSH; AAA+ protein, hex 99.4 2.1E-13 7.1E-18 118.7 6.2 95 2-98 153-250 (499)
15 1xwi_A SKD1 protein; VPS4B, AA 99.4 8.8E-13 3E-17 107.9 9.6 99 3-104 133-235 (322)
16 1iy2_A ATP-dependent metallopr 99.4 2.4E-12 8.3E-17 102.2 9.0 94 3-98 163-259 (278)
17 1ypw_A Transitional endoplasmi 99.3 1.3E-14 4.4E-19 132.1 -5.6 99 3-103 601-702 (806)
18 2qz4_A Paraplegin; AAA+, SPG7, 99.3 2.5E-12 8.6E-17 99.8 7.1 67 3-71 130-196 (262)
19 3h4m_A Proteasome-activating n 99.3 5.4E-12 1.8E-16 99.6 8.4 97 3-101 141-240 (285)
20 3eie_A Vacuolar protein sortin 99.3 5.3E-12 1.8E-16 102.6 8.2 99 3-104 138-240 (322)
21 3hu3_A Transitional endoplasmi 99.3 4.9E-12 1.7E-16 109.6 8.4 99 3-103 325-426 (489)
22 2qp9_X Vacuolar protein sortin 99.3 7.7E-12 2.6E-16 103.5 8.2 98 3-103 171-272 (355)
23 2zan_A Vacuolar protein sortin 99.3 7.6E-12 2.6E-16 106.6 7.4 99 3-104 255-357 (444)
24 3t15_A Ribulose bisphosphate c 99.3 1.5E-11 5.2E-16 99.2 8.7 83 3-88 129-220 (293)
25 2r62_A Cell division protease 99.1 5.9E-12 2E-16 98.7 0.2 65 3-68 135-199 (268)
26 3d8b_A Fidgetin-like protein 1 99.0 7.2E-10 2.5E-14 91.5 8.2 98 3-102 204-305 (357)
27 1g41_A Heat shock protein HSLU 98.9 9.5E-11 3.2E-15 100.8 0.0 56 2-61 131-188 (444)
28 1ypw_A Transitional endoplasmi 98.9 2.2E-09 7.7E-14 97.7 9.0 98 3-102 325-425 (806)
29 3vfd_A Spastin; ATPase, microt 98.9 1.9E-09 6.3E-14 89.6 6.7 96 3-100 235-334 (389)
30 3b9p_A CG5977-PA, isoform A; A 98.9 1.6E-09 5.5E-14 85.9 5.8 98 3-102 141-243 (297)
31 2c9o_A RUVB-like 1; hexameric 98.2 2.5E-07 8.6E-12 78.6 0.4 59 4-62 174-236 (456)
32 3m6a_A ATP-dependent protease 97.7 1.2E-05 4E-10 70.1 3.1 44 19-65 223-266 (543)
33 3syl_A Protein CBBX; photosynt 97.6 6E-05 2.1E-09 59.4 5.4 68 3-76 156-228 (309)
34 3pfi_A Holliday junction ATP-d 97.5 0.00018 6.1E-09 57.6 6.1 60 20-81 154-214 (338)
35 2r44_A Uncharacterized protein 97.4 0.0014 4.8E-08 52.4 10.3 47 19-67 149-200 (331)
36 3kw6_A 26S protease regulatory 97.3 0.00018 6E-09 46.9 3.4 54 50-103 1-57 (78)
37 1hqc_A RUVB; extended AAA-ATPa 97.2 0.0018 6.3E-08 51.0 9.0 60 20-81 138-198 (324)
38 3pxg_A Negative regulator of g 97.2 0.0012 4.2E-08 56.1 8.2 46 19-67 290-340 (468)
39 2chg_A Replication factor C sm 97.1 0.0017 5.7E-08 47.3 7.3 56 4-66 120-175 (226)
40 1ofh_A ATP-dependent HSL prote 97.1 0.00051 1.7E-08 53.7 4.7 59 3-63 145-213 (310)
41 1njg_A DNA polymerase III subu 97.0 0.0038 1.3E-07 45.8 8.8 72 3-81 143-215 (250)
42 3uk6_A RUVB-like 2; hexameric 97.0 0.0027 9.2E-08 51.1 8.2 51 28-81 238-289 (368)
43 2krk_A 26S protease regulatory 96.9 0.00039 1.3E-08 46.6 2.4 56 48-103 7-65 (86)
44 3pxi_A Negative regulator of g 96.9 0.0028 9.5E-08 56.7 8.7 46 19-67 290-340 (758)
45 1d2n_A N-ethylmaleimide-sensit 96.9 0.0019 6.5E-08 50.3 6.4 73 4-83 152-226 (272)
46 4fcw_A Chaperone protein CLPB; 96.8 0.00076 2.6E-08 53.0 3.7 62 3-66 136-230 (311)
47 2v1u_A Cell division control p 96.7 0.0038 1.3E-07 49.8 7.1 46 19-66 166-215 (387)
48 3u61_B DNA polymerase accessor 96.6 0.0013 4.3E-08 52.4 3.4 54 4-64 124-177 (324)
49 1g8p_A Magnesium-chelatase 38 96.6 0.0024 8.2E-08 50.8 5.0 43 20-64 187-231 (350)
50 3f9v_A Minichromosome maintena 96.6 0.0022 7.6E-08 56.4 5.1 61 4-67 409-492 (595)
51 1sxj_D Activator 1 41 kDa subu 96.5 0.0091 3.1E-07 47.3 8.1 70 4-80 151-221 (353)
52 1jbk_A CLPB protein; beta barr 96.5 0.00035 1.2E-08 49.9 -0.3 40 19-61 150-194 (195)
53 1l8q_A Chromosomal replication 96.4 0.0051 1.7E-07 49.0 6.0 75 4-83 118-198 (324)
54 2qby_B CDC6 homolog 3, cell di 96.4 0.016 5.5E-07 46.4 8.8 46 19-66 163-211 (384)
55 3pxi_A Negative regulator of g 96.3 0.0045 1.5E-07 55.4 5.6 62 3-66 596-676 (758)
56 2chq_A Replication factor C sm 96.3 0.0078 2.7E-07 46.9 6.2 59 19-80 131-190 (319)
57 1r6b_X CLPA protein; AAA+, N-t 96.3 0.012 4.2E-07 52.3 8.2 54 7-65 304-362 (758)
58 4akg_A Glutathione S-transfera 96.2 0.0039 1.3E-07 63.4 5.2 44 20-66 1384-1432(2695)
59 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0055 1.9E-07 54.6 4.6 62 3-66 574-667 (758)
60 1jr3_A DNA polymerase III subu 95.9 0.029 1E-06 44.7 7.9 58 3-67 136-193 (373)
61 2z4s_A Chromosomal replication 95.9 0.0052 1.8E-07 51.9 3.6 59 4-66 214-277 (440)
62 1sxj_E Activator 1 40 kDa subu 95.8 0.013 4.5E-07 46.7 5.6 57 4-67 152-208 (354)
63 1iqp_A RFCS; clamp loader, ext 95.8 0.017 5.8E-07 45.1 6.2 59 4-69 128-186 (327)
64 1sxj_B Activator 1 37 kDa subu 95.8 0.022 7.7E-07 44.3 6.8 56 5-67 126-181 (323)
65 3bos_A Putative DNA replicatio 95.8 0.0071 2.4E-07 44.9 3.6 74 4-81 124-204 (242)
66 2qby_A CDC6 homolog 1, cell di 95.7 0.054 1.9E-06 42.9 8.8 59 3-66 149-211 (386)
67 1svm_A Large T antigen; AAA+ f 95.7 0.0019 6.6E-08 54.0 0.1 40 4-51 245-284 (377)
68 3nbx_X ATPase RAVA; AAA+ ATPas 95.6 0.027 9.2E-07 48.7 7.1 60 3-65 126-196 (500)
69 3vlf_B 26S protease regulatory 95.5 0.0065 2.2E-07 40.5 2.2 52 53-104 2-56 (88)
70 1a5t_A Delta prime, HOLB; zinc 95.1 0.065 2.2E-06 43.1 7.5 56 3-65 125-180 (334)
71 2p65_A Hypothetical protein PF 94.9 0.0021 7.3E-08 45.8 -1.7 32 19-53 151-187 (187)
72 1qvr_A CLPB protein; coiled co 94.9 0.011 3.7E-07 53.7 2.5 44 19-65 298-345 (854)
73 3pvs_A Replication-associated 94.5 0.075 2.6E-06 45.1 6.7 54 5-67 125-180 (447)
74 3aji_B S6C, proteasome (prosom 94.5 0.009 3.1E-07 39.0 0.8 51 53-103 2-55 (83)
75 3te6_A Regulatory protein SIR3 94.5 0.12 4.2E-06 42.1 7.6 46 19-66 162-212 (318)
76 3hws_A ATP-dependent CLP prote 94.2 0.11 3.6E-06 42.1 6.5 29 33-63 239-267 (363)
77 1sxj_C Activator 1 40 kDa subu 93.9 0.18 6.2E-06 40.2 7.5 58 4-68 128-185 (340)
78 1fnn_A CDC6P, cell division co 93.9 0.1 3.4E-06 41.6 5.9 61 4-66 143-207 (389)
79 1in4_A RUVB, holliday junction 93.2 0.09 3.1E-06 42.3 4.5 44 21-66 151-194 (334)
80 1qvr_A CLPB protein; coiled co 92.3 0.11 3.8E-06 47.1 4.3 62 3-66 677-771 (854)
81 2c9o_A RUVB-like 1; hexameric 90.8 0.49 1.7E-05 39.6 6.5 34 30-66 347-380 (456)
82 2gno_A DNA polymerase III, gam 90.6 0.2 6.9E-06 40.2 3.7 54 3-65 99-152 (305)
83 1um8_A ATP-dependent CLP prote 89.5 0.51 1.7E-05 38.1 5.3 28 33-62 256-283 (376)
84 1sxj_A Activator 1 95 kDa subu 88.2 1.2 4E-05 37.9 6.9 55 4-66 169-223 (516)
85 2dzn_B 26S protease regulatory 87.7 0.028 9.6E-07 36.7 -2.8 49 55-103 1-52 (82)
86 1g41_A Heat shock protein HSLU 84.5 1.1 3.6E-05 38.3 4.7 56 4-61 280-345 (444)
87 1ojl_A Transcriptional regulat 82.0 0.58 2E-05 37.2 2.0 43 20-65 137-190 (304)
88 1w5s_A Origin recognition comp 81.4 0.84 2.9E-05 36.5 2.7 45 19-65 178-228 (412)
89 3vkg_A Dynein heavy chain, cyt 76.2 2.7 9.3E-05 43.9 5.1 43 20-65 1422-1469(3245)
90 2bjv_A PSP operon transcriptio 74.2 1.6 5.3E-05 33.2 2.2 43 20-65 141-194 (265)
91 2r2a_A Uncharacterized protein 73.6 2.1 7.1E-05 32.2 2.7 36 19-56 122-157 (199)
92 3k1j_A LON protease, ATP-depen 64.1 2.5 8.7E-05 36.7 1.6 62 20-83 252-327 (604)
93 2vhj_A Ntpase P4, P4; non- hyd 56.1 2.5 8.7E-05 34.8 0.2 32 3-37 211-242 (331)
94 1jr3_D DNA polymerase III, del 44.0 34 0.0012 26.7 5.0 59 4-69 95-159 (343)
95 3f8t_A Predicted ATPase involv 38.9 13 0.00044 32.3 1.9 36 19-56 338-385 (506)
96 4akg_A Glutathione S-transfera 28.5 45 0.0016 34.5 4.1 41 20-63 747-791 (2695)
97 1o6d_A Hypothetical UPF0247 pr 26.8 69 0.0024 23.4 3.9 40 21-65 98-140 (163)
98 2iut_A DNA translocase FTSK; n 26.7 77 0.0026 27.8 4.8 41 19-61 377-419 (574)
99 2ius_A DNA translocase FTSK; n 25.1 66 0.0023 27.6 4.0 42 19-62 331-374 (512)
100 3co5_A Putative two-component 23.8 9.3 0.00032 26.3 -1.3 23 5-30 94-116 (143)
101 3cmw_A Protein RECA, recombina 21.1 19 0.00066 35.6 -0.1 25 3-30 1194-1218(1706)
102 3n70_A Transport activator; si 20.3 66 0.0023 21.7 2.6 23 4-30 94-116 (145)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.7e-22 Score=171.02 Aligned_cols=100 Identities=26% Similarity=0.289 Sum_probs=87.1
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||++|||+.+. ++|+||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|+...+.....++..++.
T Consensus 271 ~l~~lL~~lDg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~ 348 (405)
T 4b4t_J 271 TMLELLNQLDGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348 (405)
T ss_dssp HHHHHHHHHHTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred HHHHHHHhhhccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 578999999999887 789999999999999999999999999999999999999999999997665443334555554
Q ss_pred ---HHhccchHHHHHHHHHHHHHHh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+++|++....|-++.+.++++.
T Consensus 349 ~t~G~SGADi~~l~~eA~~~Air~~ 373 (405)
T 4b4t_J 349 KMNGCSGADVKGVCTEAGMYALRER 373 (405)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999988888654
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=7.8e-22 Score=169.47 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=86.6
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC---hHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL---FPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~---~~~i~~ 78 (147)
++++||++|||+.+. ++|+||+|||+|+.|||||+||||||++|+|++||.++|.+||+.|+...+... ...++.
T Consensus 305 ~l~~LL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 305 TMLELLNQLDGFDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382 (437)
T ss_dssp HHHHHHHHHHHCCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhCcCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 578999999999887 789999999999999999999999999999999999999999999997664433 334444
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
.+.+|+|++....|.++.+.++++.
T Consensus 383 ~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 383 TKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4448999999999999988888654
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.3e-21 Score=168.27 Aligned_cols=100 Identities=24% Similarity=0.316 Sum_probs=86.0
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||++|||+.+. ++++||+|||+|+.|||||+||||||++|+|++|+.++|.+||+.|+...+.....++..++.
T Consensus 304 ~l~~lL~~lDg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 304 TLMELLTQMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHHHHSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 478999999999887 789999999999999999999999999999999999999999999987654333334445544
Q ss_pred ---HHhccchHHHHHHHHHHHHHHh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+|+|++....|.++.+.+++..
T Consensus 382 ~t~G~sGADi~~l~~eA~~~air~~ 406 (437)
T 4b4t_L 382 MSDGFNGADIRNCATEAGFFAIRDD 406 (437)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 8999999999999888887653
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.7e-21 Score=167.32 Aligned_cols=99 Identities=25% Similarity=0.308 Sum_probs=85.5
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCC---CChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDH---NLFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~ 78 (147)
++++||++|||+.+. ++|+||||||+|+.|||||+||||||++|+|++|+.++|.+||+.|+...+. .+...++.
T Consensus 304 ~~~~lL~~ldg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~ 381 (434)
T 4b4t_M 304 TMLELLNQLDGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381 (434)
T ss_dssp HHHHHHHHHTTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred HHHHHHHHhhccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 478999999999887 7899999999999999999999999999999999999999999999865433 33445555
Q ss_pred HHHHHhccchHHHHHHHHHHHHHH
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~ 102 (147)
.+.+|+|++....|.++.+.+++.
T Consensus 382 ~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 382 STDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHc
Confidence 555899999999999988888764
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=4.5e-21 Score=165.94 Aligned_cols=101 Identities=26% Similarity=0.345 Sum_probs=87.0
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC---ChHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN---LFPEIDE 78 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~---~~~~i~~ 78 (147)
++++||++|||+.+. ++|+||+|||||+.|||||+||||||++|+|++|+.++|.+||+.|+...+.. +...++.
T Consensus 332 ~l~~lL~~lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~ 409 (467)
T 4b4t_H 332 TMLELITQLDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR 409 (467)
T ss_dssp HHHHHHHHHHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred HHHHHHHHhhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 578999999999887 78999999999999999999999999999999999999999999999766443 3344555
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHhh
Q 042776 79 LLTKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 79 l~~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
.+.+|+|++....|.++.+.+++..+
T Consensus 410 ~T~GfSGADI~~l~~eAa~~Air~~~ 435 (467)
T 4b4t_H 410 LCPNSTGAELRSVCTEAGMFAIRARR 435 (467)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 55589999999999999888886543
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.7e-21 Score=164.92 Aligned_cols=100 Identities=24% Similarity=0.330 Sum_probs=85.8
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeec-CCCHHHHHHHHHHHhCCCCC---CChHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMS-YCNPSGFRILVSNYLGINDH---NLFPEID 77 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~-~P~~~~r~~il~~~l~~~~~---~~~~~i~ 77 (147)
++++||++|||+.+. .+|+||||||+|+.|||||+||||||++|+|+ +|+.++|..||+.|+...+. .+...++
T Consensus 295 ~l~~lL~~ldg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA 372 (428)
T 4b4t_K 295 ILIELLTQMDGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLI 372 (428)
T ss_dssp HHHHHHHHHHHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHH
T ss_pred HHHHHHHHhhCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHH
Confidence 479999999999987 78999999999999999999999999999995 99999999999999865533 3344455
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHh
Q 042776 78 ELLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 78 ~l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
..+.+|+|++....|-++.+.++++.
T Consensus 373 ~~t~G~sgadi~~l~~eA~~~a~r~~ 398 (428)
T 4b4t_K 373 IRNDSLSGAVIAAIMQEAGLRAVRKN 398 (428)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 55558999999999999988888653
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.80 E-value=2.7e-20 Score=169.87 Aligned_cols=100 Identities=18% Similarity=0.307 Sum_probs=71.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHH---HH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEID---EL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~---~l 79 (147)
+|+||++|||+.+. ++|+||+|||+|+.||||++||||||++|+|++|+.++|.+||+.|+...+.....++. ..
T Consensus 601 ~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~ 678 (806)
T 3cf2_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC---------
T ss_pred HHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHh
Confidence 79999999999887 78999999999999999999999999999999999999999999999876544444444 44
Q ss_pred HHHHhccchHHHHHHHHHHHHHHhh
Q 042776 80 LTKLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 80 ~~~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
+++|+|++....|-++.+.++++.-
T Consensus 679 t~g~SGadi~~l~~~A~~~a~r~~~ 703 (806)
T 3cf2_A 679 TNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5599999999999999888887654
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.67 E-value=5.1e-17 Score=148.29 Aligned_cols=101 Identities=22% Similarity=0.317 Sum_probs=86.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++||++|||+.+. .+|+||+|||+|+.|||||+||||||+.|+|++|+.++|.+||+.|+.........++..++.
T Consensus 325 v~~LL~~mdg~~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~ 402 (806)
T 3cf2_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp HHHHHTHHHHCCGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHH
T ss_pred HHHHHHHHhccccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHh
Confidence 78999999999887 779999999999999999999999999999999999999999999997664444444555555
Q ss_pred --HHhccchHHHHHHHHHHHHHHhhH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRKKT 105 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~~~ 105 (147)
+|++.|....|-++.+.++++...
T Consensus 403 T~GfsgaDL~~Lv~eA~~~A~~r~~~ 428 (806)
T 3cf2_A 403 THGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 888888888888888887776543
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.64 E-value=2.9e-16 Score=126.28 Aligned_cols=99 Identities=20% Similarity=0.335 Sum_probs=82.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC---CCCChHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN---DHNLFPEIDEL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~---~~~~~~~i~~l 79 (147)
+++++.+|||.... ..++++++||+|+.||||++||||||+.|+|++|+.++|.+|++.++... +.....++..+
T Consensus 131 ~~~~l~~Lsgg~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~l 208 (274)
T 2x8a_A 131 VNQLLTEMDGLEAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAI 208 (274)
T ss_dssp HHHHHHHHHTCCST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHH
T ss_pred HHHHHHhhhccccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHH
Confidence 57899999999877 77999999999999999999999999999999999999999999998532 22223345555
Q ss_pred HH-----HHhccchHHHHHHHHHHHHHHh
Q 042776 80 LT-----KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 80 ~~-----~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+. +|+++|....|-++.+.++++.
T Consensus 209 a~~~~~~g~sgadl~~l~~~a~~~a~~~~ 237 (274)
T 2x8a_A 209 AGDLRCDCYTGADLSALVREASICALRQE 237 (274)
T ss_dssp HTCSGGGSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhccCCcCHHHHHHHHHHHHHHHHHHH
Confidence 53 7889999988888888877654
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.54 E-value=1.6e-14 Score=116.67 Aligned_cols=98 Identities=19% Similarity=0.306 Sum_probs=78.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++||..|||+... .+++||+|||+|+.||+|++|||||+..|+|++|+.++|.+|++.++...+.....++..++.
T Consensus 139 ~~~lL~~l~~~~~~--~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~ 216 (301)
T 3cf0_A 139 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 216 (301)
T ss_dssp HHHHHHHHHSSCTT--SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHT
T ss_pred HHHHHHHhhcccCC--CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHH
Confidence 58899999999765 679999999999999999999999999999999999999999999997654332333444544
Q ss_pred --HHhccchHHHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~ 102 (147)
++.+.+....|-++++.++..
T Consensus 217 ~~g~sg~dl~~l~~~a~~~a~~~ 239 (301)
T 3cf0_A 217 TNGFSGADLTEICQRACKLAIRE 239 (301)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHH
Confidence 666766666666666655544
No 11
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.50 E-value=2.8e-14 Score=123.64 Aligned_cols=97 Identities=25% Similarity=0.288 Sum_probs=74.9
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||..|||+... .+++||+|||+|+.||||++||||||+.|+|++|+.++|..|++.|+...+.....++..++.
T Consensus 138 ~l~~LL~~ld~~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~ 215 (476)
T 2ce7_A 138 TLNQLLVEMDGFDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAK 215 (476)
T ss_dssp HHHHHHHHHHHSCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHH
T ss_pred HHHHHHHHHhccCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHH
Confidence 478999999999776 679999999999999999999999999999999999999999999987654332223444444
Q ss_pred ---HHhccchHHHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVEFL 100 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l 100 (147)
++++++....|-++++.+.
T Consensus 216 ~t~G~sgadL~~lv~~Aal~A~ 237 (476)
T 2ce7_A 216 RTPGFVGADLENLVNEAALLAA 237 (476)
T ss_dssp TCTTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHHHHHHHH
Confidence 5555555555544444433
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.46 E-value=2.7e-13 Score=106.14 Aligned_cols=96 Identities=22% Similarity=0.276 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
++++|..||++... .+++||+|||+|+.||++++|||||++.|+|++|+.++|.+|++.|+...+......+..++.
T Consensus 135 ~~~ll~~l~~~~~~--~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~ 212 (257)
T 1lv7_A 135 LNQMLVEMDGFEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARG 212 (257)
T ss_dssp HHHHHHHHHTCCSS--SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT
T ss_pred HHHHHHHhhCcccC--CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHH
Confidence 67899999999765 679999999999999999999999999999999999999999999987543332223344444
Q ss_pred --HHhccchHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFL 100 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l 100 (147)
++.+++....+-+++..+.
T Consensus 213 ~~G~~~~dl~~l~~~a~~~a~ 233 (257)
T 1lv7_A 213 TPGFSGADLANLVNEAALFAA 233 (257)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 4455555555555554444
No 13
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.43 E-value=3.9e-13 Score=105.05 Aligned_cols=96 Identities=23% Similarity=0.272 Sum_probs=74.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
++++|..|+|.... ..++++++||+|+.|||+++||||||+.|+|++|+.++|.+|++.++...+.....++..++.
T Consensus 139 ~~~ll~~l~g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~ 216 (254)
T 1ixz_A 139 LNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 216 (254)
T ss_dssp HHHHHHHHHTCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT
T ss_pred HHHHHHHHhCCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHH
Confidence 57899999998766 678999999999999999999999999999999999999999998876543333333445554
Q ss_pred --HHhccchHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFL 100 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l 100 (147)
++++++....+-+++..++
T Consensus 217 ~~G~~~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 217 TPGFVGADLENLLNEAALLAA 237 (254)
T ss_dssp CTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHH
Confidence 5555555555555554443
No 14
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.40 E-value=2.1e-13 Score=118.74 Aligned_cols=95 Identities=24% Similarity=0.296 Sum_probs=72.2
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
++++||..|||.... ..++||++||+|+.|||+++||||||+.|+|++|+..+|.+|++.|+...+.....++..++.
T Consensus 153 ~l~~LL~~Ldg~~~~--~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~ 230 (499)
T 2dhr_A 153 TLNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAK 230 (499)
T ss_dssp HHHHHHHHGGGCCSS--CCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHT
T ss_pred HHHHHHHHhcccccC--ccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 468999999999876 779999999999999999999999999999999999999999999886443332223333333
Q ss_pred ---HHhccchHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVE 98 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~ 98 (147)
++++++....+-++++.
T Consensus 231 ~t~G~~gadL~~lv~~Aa~~ 250 (499)
T 2dhr_A 231 RTPGFVGADLENLLNEAALL 250 (499)
T ss_dssp TSCSCCHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHH
Confidence 44555554444444443
No 15
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.40 E-value=8.8e-13 Score=107.89 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=82.9
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~~ 81 (147)
+++||..|||+... ..+++||+|||+|+.||+|++| |||+.|++++|+.++|..|++.++...+.. ...++..++.
T Consensus 133 ~~~ll~~ld~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 209 (322)
T 1xwi_A 133 KTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR 209 (322)
T ss_dssp HHHHHHHHHCSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred HHHHHHHHhccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 57899999999643 2779999999999999999999 999999999999999999999999766543 4556777776
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
++++++....|-++.+.++++..
T Consensus 210 ~t~G~sgadl~~l~~~A~~~a~r~~~ 235 (322)
T 1xwi_A 210 KTDGYSGADISIIVRDALMQPVRKVQ 235 (322)
T ss_dssp TCTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888877776543
No 16
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.35 E-value=2.4e-12 Score=102.22 Aligned_cols=94 Identities=23% Similarity=0.290 Sum_probs=71.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++++..|+|.... ..++++++||+|+.|||+++||||||+.|+|++|+.++|.+|++.++.........++..++.
T Consensus 163 ~~~ll~~lsgg~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~ 240 (278)
T 1iy2_A 163 LNQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKR 240 (278)
T ss_dssp HHHHHHHHTTCCTT--CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHT
T ss_pred HHHHHHHHhCCCCC--CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHH
Confidence 57889999998765 668899999999999999999999999999999999999999999886543332333444544
Q ss_pred --HHhccchHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVE 98 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~ 98 (147)
++++++....+-+++..
T Consensus 241 ~~G~~~~dl~~l~~~a~~~ 259 (278)
T 1iy2_A 241 TPGFVGADLENLLNEAALL 259 (278)
T ss_dssp CTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHH
Confidence 44444444444444433
No 17
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.34 E-value=1.3e-14 Score=132.09 Aligned_cols=99 Identities=18% Similarity=0.290 Sum_probs=72.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh---HHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF---PEIDEL 79 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~---~~i~~l 79 (147)
+++||.+|||+... .+++||+|||+|+.||||++||||||+.|+|++|+.++|..|++.++...+.... ..++..
T Consensus 601 ~~~LL~~ld~~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~ 678 (806)
T 1ypw_A 601 INQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKM 678 (806)
T ss_dssp HHHHHTTCC--------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGG
T ss_pred HHHHHHHHhccccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHh
Confidence 68999999999776 7799999999999999999999999999999999999999999999865432222 223333
Q ss_pred HHHHhccchHHHHHHHHHHHHHHh
Q 042776 80 LTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 80 ~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+.++.+.+....|-++...++++.
T Consensus 679 t~g~sgadi~~l~~~a~~~a~~~~ 702 (806)
T 1ypw_A 679 TNGFSGADLTEICQRACKLAIRES 702 (806)
T ss_dssp GSSSCCHHHHHHHHHHHHHHHSCC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHH
Confidence 336667777777777777666543
No 18
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.32 E-value=2.5e-12 Score=99.84 Aligned_cols=67 Identities=31% Similarity=0.442 Sum_probs=60.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN 71 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~ 71 (147)
+++||..+|++... .+++||+|||+++.||++++|||||+..|+|++|+.++|.+|++.++......
T Consensus 130 l~~ll~~~~~~~~~--~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~ 196 (262)
T 2qz4_A 130 LNQLLVEMDGMGTT--DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT 196 (262)
T ss_dssp HHHHHHHHHTCCTT--CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhCcCCC--CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC
Confidence 57899999998765 67999999999999999999999999999999999999999999998654433
No 19
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.30 E-value=5.4e-12 Score=99.61 Aligned_cols=97 Identities=24% Similarity=0.292 Sum_probs=74.4
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+..+|..+|++... .+++||+|||+|+.||++++|||||+..++|+.|+.++|.+|++.++.........++..++.
T Consensus 141 l~~ll~~~~~~~~~--~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~ 218 (285)
T 3h4m_A 141 LMQLLAEMDGFDAR--GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKM 218 (285)
T ss_dssp HHHHHHHHHTTCSS--SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHH
T ss_pred HHHHHHHhhCCCCC--CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHH
Confidence 56788889998776 679999999999999999999999999999999999999999999987554333333444444
Q ss_pred --HHhccchHHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFLK 101 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~ 101 (147)
++.+.+....+-.+...++.
T Consensus 219 ~~g~~~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 219 TEGCVGAELKAICTEAGMNAIR 240 (285)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHH
Confidence 55555555555555544444
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.30 E-value=5.3e-12 Score=102.64 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=81.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~~ 81 (147)
+++||..|||+... ..+++||+|||+|+.||+|++| ||+..|+|++|+.++|.+|++.++...+.. ....+..++.
T Consensus 138 ~~~ll~~l~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~ 214 (322)
T 3eie_A 138 KTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214 (322)
T ss_dssp HHHHHHHHGGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHhcccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 58899999999643 2679999999999999999999 999999999999999999999999876544 3456677766
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
++++++....|-++.+..+++..
T Consensus 215 ~t~g~sg~di~~l~~~a~~~a~r~~~ 240 (322)
T 3eie_A 215 MTEGYSGSDIAVVVKDALMQPIRKIQ 240 (322)
T ss_dssp TTTTCCHHHHHHHHHHHTTHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 66777777777777777766554
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.30 E-value=4.9e-12 Score=109.58 Aligned_cols=99 Identities=22% Similarity=0.328 Sum_probs=80.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++||..||++... ..++||+|||+|+.||++++|+|||+..|+|++|+.++|..||+.++.........++..++.
T Consensus 325 ~~~LL~~ld~~~~~--~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~ 402 (489)
T 3hu3_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (489)
T ss_dssp HHHHHHHHHHSCTT--SCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHT
T ss_pred HHHHHHHhhccccC--CceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHH
Confidence 57899999998776 679999999999999999999999999999999999999999999987654443334555555
Q ss_pred --HHhccchHHHHHHHHHHHHHHh
Q 042776 82 --KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~~ 103 (147)
++++.+....|-++...++++.
T Consensus 403 t~g~s~~dL~~L~~~A~~~a~r~~ 426 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQAIRKK 426 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhc
Confidence 6667666666666666666543
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.28 E-value=7.7e-12 Score=103.54 Aligned_cols=98 Identities=17% Similarity=0.192 Sum_probs=80.3
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~~ 81 (147)
+++||..|||+... ..+++||+|||+|+.||++++| ||+..|+|++|+.++|..|++.++...+.. ...++..++.
T Consensus 171 ~~~ll~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~ 247 (355)
T 2qp9_X 171 KTELLVQMNGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA 247 (355)
T ss_dssp HHHHHHHHHHCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHH
T ss_pred HHHHHHHhhccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 68899999999653 2679999999999999999999 999999999999999999999999866543 3456666666
Q ss_pred ---HHhccchHHHHHHHHHHHHHHh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~ 103 (147)
++++++....|-++++.++.+.
T Consensus 248 ~t~G~sg~dl~~l~~~A~~~a~~~~ 272 (355)
T 2qp9_X 248 MTEGYSGSDIAVVVKDALMQPIRKI 272 (355)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888887777654
No 23
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.26 E-value=7.6e-12 Score=106.59 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=82.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~~ 81 (147)
+++||..|||+... ..+++||+|||+|+.|||+++| ||+..|+|++|+.++|..|++.++...+.. ...++..++.
T Consensus 255 ~~~lL~~l~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 255 KTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp HHHHHTTTTCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHHhCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 57899999998643 2679999999999999999999 999999999999999999999999765442 3456666666
Q ss_pred ---HHhccchHHHHHHHHHHHHHHhh
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
++++++....|-++++..+++..
T Consensus 332 ~t~G~sgadl~~l~~~a~~~a~r~~~ 357 (444)
T 2zan_A 332 KTDGYSGADISIIVRDALMQPVRKVQ 357 (444)
T ss_dssp HTTTCCHHHHHHHHHHHHTHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888888887776643
No 24
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.26 E-value=1.5e-11 Score=99.18 Aligned_cols=83 Identities=14% Similarity=0.145 Sum_probs=65.2
Q ss_pred HHHHHHHhhCCCC---------CCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh
Q 042776 3 LSGLLNFIDGLWS---------SCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF 73 (147)
Q Consensus 3 v~~lL~~lDgl~~---------~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~ 73 (147)
.+.||+.||+... ....+++||+|||+++.||+|++||||||+.|+ +|+.++|.+|++.++.... ...
T Consensus 129 ~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~~-~~~ 205 (293)
T 3t15_A 129 NATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTDN-VPA 205 (293)
T ss_dssp HHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGGC-CCH
T ss_pred HHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCCC-CCH
Confidence 3789999986641 112569999999999999999999999999997 5899999999998886543 336
Q ss_pred HHHHHHHHHHhccch
Q 042776 74 PEIDELLTKLMKSEV 88 (147)
Q Consensus 74 ~~i~~l~~~l~~~~~ 88 (147)
..++.++.++.+.+.
T Consensus 206 ~~l~~~~~~~~~~~l 220 (293)
T 3t15_A 206 EDVVKIVDNFPGQSI 220 (293)
T ss_dssp HHHHHHHHHSCSCCH
T ss_pred HHHHHHhCCCCcccH
Confidence 678888888877665
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.13 E-value=5.9e-12 Score=98.73 Aligned_cols=65 Identities=31% Similarity=0.400 Sum_probs=57.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+++||..||++.+. ...++||+|||+++.||++++|+|||+..|+|++|+.++|..+++.++...
T Consensus 135 ~~~ll~~l~~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~ 199 (268)
T 2r62_A 135 LNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGV 199 (268)
T ss_dssp TTTTTTTTTCSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSS
T ss_pred HHHHHHHhhCcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcC
Confidence 56788889988654 245899999999999999999999999999999999999999999998654
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.01 E-value=7.2e-10 Score=91.50 Aligned_cols=98 Identities=18% Similarity=0.250 Sum_probs=73.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~~ 81 (147)
+++||..|||+.......++||+|||+|+.||++++| ||+..+++++|+.++|..|+..++...... ....+..++.
T Consensus 204 ~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~ 281 (357)
T 3d8b_A 204 KTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281 (357)
T ss_dssp HHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 4689999999875545779999999999999999999 999999999999999999999988654333 2345566655
Q ss_pred ---HHhccchHHHHHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l~~ 102 (147)
++++.+....|-.+....+++
T Consensus 282 ~t~G~s~~dl~~l~~~a~~~~ir~ 305 (357)
T 3d8b_A 282 QSDAFSGADMTQLCREASLGPIRS 305 (357)
T ss_dssp HTTTCCHHHHHHHHHHHHTHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655543
No 27
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.93 E-value=9.5e-11 Score=100.84 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=0.0
Q ss_pred cHHHHHHHhhCCCCCCCCceEEEEe-cCCCCCCCccccCCCeeeeEEeecCCCHH-HHHHHH
Q 042776 2 TLSGLLNFIDGLWSSCGDERIIVFT-TNHKNRLDPALLRPGRMDMHIHMSYCNPS-GFRILV 61 (147)
Q Consensus 2 tv~~lL~~lDgl~~~~~~~vivi~a-TN~p~~LD~Al~RpGRfd~~i~~~~P~~~-~r~~il 61 (147)
.+++||++|||+.+. .++ +++ ||+|+.|||||+||||||+.|+|++|+.. .|.+||
T Consensus 131 vl~~LL~~~dg~~~~--~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 131 ILDALLPPAKNQWGE--VEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHHHHHHhhccccc--ccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 378999999999775 333 455 99999999999999999999999999988 677765
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.93 E-value=2.2e-09 Score=97.67 Aligned_cols=98 Identities=21% Similarity=0.320 Sum_probs=76.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH-
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEIDELLT- 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~- 81 (147)
+++|+..|||+... ..++||+|||+|+.||+++.|+|||++.|++++|+.++|..|++.++.........++..++.
T Consensus 325 ~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~ 402 (806)
T 1ypw_A 325 VSQLLTLMDGLKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANE 402 (806)
T ss_dssp HHHHHHHHHSSCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHS
T ss_pred HHHHHHHhhhhccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHh
Confidence 47899999999876 679999999999999999999999999999999999999999999886554333333445554
Q ss_pred --HHhccchHHHHHHHHHHHHHH
Q 042776 82 --KLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 82 --~l~~~~~~~~al~~~~~~l~~ 102 (147)
++++.+....|.++....+..
T Consensus 403 t~g~~g~dl~~l~~ea~~~a~r~ 425 (806)
T 1ypw_A 403 THGHVGADLAALCSEAALQAIRK 425 (806)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHhh
Confidence 566666666666655555543
No 29
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.90 E-value=1.9e-09 Score=89.65 Aligned_cols=96 Identities=24% Similarity=0.268 Sum_probs=68.6
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC-hHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL-FPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~i~~l~~ 81 (147)
+++||..|||+.......++||+|||+++.||++++| ||+..|+|++|+.++|..|++.++......+ ...+..++.
T Consensus 235 ~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~ 312 (389)
T 3vfd_A 235 KTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLAR 312 (389)
T ss_dssp HHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHH
T ss_pred HHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4688999999876545779999999999999999999 9999999999999999999999987654433 344555554
Q ss_pred ---HHhccchHHHHHHHHHHHH
Q 042776 82 ---KLMKSEVAEVALEGLVEFL 100 (147)
Q Consensus 82 ---~l~~~~~~~~al~~~~~~l 100 (147)
++.+.+....+-.+....+
T Consensus 313 ~~~g~~~~~l~~L~~~a~~~~~ 334 (389)
T 3vfd_A 313 MTDGYSGSDLTALAKDAALGPI 334 (389)
T ss_dssp HTTTCCHHHHHHHHHHHTTHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHH
Confidence 3344344344433333333
No 30
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.89 E-value=1.6e-09 Score=85.94 Aligned_cols=98 Identities=21% Similarity=0.270 Sum_probs=69.9
Q ss_pred HHHHHHHhhCCCCC-CCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCC-ChHHHHHHH
Q 042776 3 LSGLLNFIDGLWSS-CGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHN-LFPEIDELL 80 (147)
Q Consensus 3 v~~lL~~lDgl~~~-~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~-~~~~i~~l~ 80 (147)
.++||..+|++... .+.+++||+|||+|+.||++++| ||+..+++++|+.++|..|++.++...... ....+..++
T Consensus 141 ~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la 218 (297)
T 3b9p_A 141 KTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA 218 (297)
T ss_dssp HHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 45789999998653 22568999999999999999999 999999999999999999999988654332 234455555
Q ss_pred H---HHhccchHHHHHHHHHHHHHH
Q 042776 81 T---KLMKSEVAEVALEGLVEFLKR 102 (147)
Q Consensus 81 ~---~l~~~~~~~~al~~~~~~l~~ 102 (147)
. ++.+++....|-++....+++
T Consensus 219 ~~~~g~~~~~l~~l~~~a~~~a~r~ 243 (297)
T 3b9p_A 219 KITDGYSGSDLTALAKDAALEPIRE 243 (297)
T ss_dssp HHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5 444444444544444444443
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.18 E-value=2.5e-07 Score=78.59 Aligned_cols=59 Identities=8% Similarity=0.047 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeee--EEeecCCCH--HHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDM--HIHMSYCNP--SGFRILVS 62 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~--~i~~~~P~~--~~r~~il~ 62 (147)
++++..|+......++.++|++|||+|+.+|+|+.||||||+ .+++++|+. +.|.+|++
T Consensus 174 ~~ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 174 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp HHHHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred HHHHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 346677763222223667777999999999999999999999 778888854 44555544
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.75 E-value=1.2e-05 Score=70.07 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=40.7
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..++||+|||+++.|||+|++ ||+ .|+|+.|+.+++..|+..|+
T Consensus 223 ~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 223 SKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp SSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred cceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 457899999999999999999 996 69999999999999999887
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.64 E-value=6e-05 Score=59.44 Aligned_cols=68 Identities=15% Similarity=0.294 Sum_probs=53.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPEI 76 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~i 76 (147)
++.|+..|+... .+++||+|||.+. .++|+|++ ||+..|+|+.|+.+++..|++.++.........+.
T Consensus 156 ~~~Ll~~l~~~~----~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~ 228 (309)
T 3syl_A 156 IEILLQVMENNR----DDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEA 228 (309)
T ss_dssp HHHHHHHHHHCT----TTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred HHHHHHHHhcCC----CCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 467888888642 4588999998664 36899999 99999999999999999999999865544433333
No 34
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.47 E-value=0.00018 Score=57.61 Aligned_cols=60 Identities=12% Similarity=0.131 Sum_probs=48.1
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh-HHHHHHHH
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF-PEIDELLT 81 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~i~~l~~ 81 (147)
.+++|+|||++..++++|++ ||+..|+|+.|+.+++..++..++........ ..+..++.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAK 214 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 47899999999999999999 99999999999999999999988764433322 33444443
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.37 E-value=0.0014 Score=52.36 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=40.1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
..++||+|+|.++ .|+++|++ ||+..++|+.|+.+++.+|++.++..
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 4577888888443 39999999 99999999999999999999998764
No 36
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.30 E-value=0.00018 Score=46.93 Aligned_cols=54 Identities=11% Similarity=-0.065 Sum_probs=42.9
Q ss_pred cCCCHHHHHHHHHHHhCCCCCCChHHHHHHHH---HHhccchHHHHHHHHHHHHHHh
Q 042776 50 SYCNPSGFRILVSNYLGINDHNLFPEIDELLT---KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 50 ~~P~~~~r~~il~~~l~~~~~~~~~~i~~l~~---~l~~~~~~~~al~~~~~~l~~~ 103 (147)
|+|+.++|.+||+.|+...+.....++..++. +|+|++....|.++.+.++...
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 57 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 57 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 68999999999999998764433334455554 9999999999999999988763
No 37
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.19 E-value=0.0018 Score=51.02 Aligned_cols=60 Identities=15% Similarity=0.146 Sum_probs=48.1
Q ss_pred ceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChH-HHHHHHH
Q 042776 20 ERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFP-EIDELLT 81 (147)
Q Consensus 20 ~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~-~i~~l~~ 81 (147)
.+++|+|||++..++++|++ ||+..+.|+.|+.+++..++..++......... .+..++.
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGR 198 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 47899999999999999998 999999999999999999999988654433333 3344433
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.16 E-value=0.0012 Score=56.11 Aligned_cols=46 Identities=17% Similarity=0.080 Sum_probs=41.5
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
..+.||+|||.++ .+|++|.| ||.. |.|+.|+.+++..|++.++..
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 4688999999998 79999999 9985 999999999999999988754
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.09 E-value=0.0017 Score=47.33 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=46.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.|+..++... .++.+|++||.+..+++++.+ ||. .++|+.|+.++...++..++.
T Consensus 120 ~~l~~~l~~~~----~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 120 AALRRTMEMYS----KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp HHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHH
Confidence 44566666532 457889999999999999999 888 899999999999999998874
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.09 E-value=0.00051 Score=53.66 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=47.4
Q ss_pred HHHHHHHhhCCCCC------CCCceEEEEe----cCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSS------CGDERIIVFT----TNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 3 v~~lL~~lDgl~~~------~~~~vivi~a----TN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
.+.||..|++.... +...+++|+| |+.|..++|+|++ ||+..|+|+.|+.+++..|++.
T Consensus 145 ~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 145 QRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 46788888875210 1145778888 6789999999998 9999999999999999999984
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.03 E-value=0.0038 Score=45.78 Aligned_cols=72 Identities=14% Similarity=0.197 Sum_probs=52.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCC-hHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNL-FPEIDELLT 81 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~-~~~i~~l~~ 81 (147)
++.|+..++... .++++|++||++..+++++++ |+ ..|+|+.|+.++...++..++....... ...+..++.
T Consensus 143 ~~~l~~~l~~~~----~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 215 (250)
T 1njg_A 143 FNALLKTLEEPP----EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLAR 215 (250)
T ss_dssp HHHHHHHHHSCC----TTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 456777776542 458899999999999999988 75 6899999999999999998885433332 233444443
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.98 E-value=0.0027 Score=51.06 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=38.8
Q ss_pred CCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHH-HHHHHH
Q 042776 28 NHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPE-IDELLT 81 (147)
Q Consensus 28 N~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i~~l~~ 81 (147)
|.+..|+++|++ ||.. |+|+.|+.+++..|++.++.........+ +..++.
T Consensus 238 ~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~ 289 (368)
T 3uk6_A 238 QSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTR 289 (368)
T ss_dssp EEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred CCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 358899999999 9987 89999999999999998876544433333 344433
No 43
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=96.94 E-value=0.00039 Score=46.60 Aligned_cols=56 Identities=20% Similarity=0.065 Sum_probs=44.3
Q ss_pred eecCCCHHHHHHHHHHHhCCCCC---CChHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Q 042776 48 HMSYCNPSGFRILVSNYLGINDH---NLFPEIDELLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 48 ~~~~P~~~~r~~il~~~l~~~~~---~~~~~i~~l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
+-+.||.++|.+||+.++...+. .+...++..+.+|+|+|....|-++.+.+++..
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~ 65 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc
Confidence 34689999999999999986543 334445555559999999999999999988764
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.94 E-value=0.0028 Score=56.74 Aligned_cols=46 Identities=17% Similarity=0.090 Sum_probs=41.2
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
..+.+|+|||.++ .+|||++| ||. .|+|+.|+.+++..|++.+...
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 5688999999998 79999999 995 5999999999999999977654
No 45
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.90 E-value=0.0019 Score=50.26 Aligned_cols=73 Identities=16% Similarity=0.149 Sum_probs=46.6
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCc-cccCCCeeeeEEeecCCCH-HHHHHHHHHHhCCCCCCChHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDP-ALLRPGRMDMHIHMSYCNP-SGFRILVSNYLGINDHNLFPEIDELLT 81 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~-Al~RpGRfd~~i~~~~P~~-~~r~~il~~~l~~~~~~~~~~i~~l~~ 81 (147)
+.|+..+++.... +..++||+|||+|+.||+ ++.+ ||+..|+++.++. +....++..... .....+..++.
T Consensus 152 ~~L~~~~~~~~~~-~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~~~----~~~~~~~~l~~ 224 (272)
T 1d2n_A 152 QALLVLLKKAPPQ-GRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALELLGN----FKDKERTTIAQ 224 (272)
T ss_dssp HHHHHHTTCCCST-TCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHHHTC----SCHHHHHHHHH
T ss_pred HHHHHHhcCccCC-CCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHhcCC----CCHHHHHHHHH
Confidence 3455566666433 356889999999999999 4554 9999998875544 555555544321 23445566655
Q ss_pred HH
Q 042776 82 KL 83 (147)
Q Consensus 82 ~l 83 (147)
..
T Consensus 225 ~~ 226 (272)
T 1d2n_A 225 QV 226 (272)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 46
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.84 E-value=0.00076 Score=52.96 Aligned_cols=62 Identities=19% Similarity=0.310 Sum_probs=48.1
Q ss_pred HHHHHHHhhCCCCCCC-------CceEEEEecCC--------------------------CCCCCccccCCCeeeeEEee
Q 042776 3 LSGLLNFIDGLWSSCG-------DERIIVFTTNH--------------------------KNRLDPALLRPGRMDMHIHM 49 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~-------~~vivi~aTN~--------------------------p~~LD~Al~RpGRfd~~i~~ 49 (147)
.+.|+..|+.-.-..+ .++++|+|||. ...++|+|+. ||+..+.|
T Consensus 136 ~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~ 213 (311)
T 4fcw_A 136 FNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVF 213 (311)
T ss_dssp HHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEEC
T ss_pred HHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEe
Confidence 3567777765321100 25779999998 5578999997 99999999
Q ss_pred cCCCHHHHHHHHHHHhC
Q 042776 50 SYCNPSGFRILVSNYLG 66 (147)
Q Consensus 50 ~~P~~~~r~~il~~~l~ 66 (147)
..|+.+.+..|++.++.
T Consensus 214 ~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 214 RPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp CCCCHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999998874
No 47
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.72 E-value=0.0038 Score=49.79 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=39.6
Q ss_pred CceEEEEecCCC---CCCCccccCCCeeee-EEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHK---NRLDPALLRPGRMDM-HIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p---~~LD~Al~RpGRfd~-~i~~~~P~~~~r~~il~~~l~ 66 (147)
.++.+|++||.+ +.+++++.+ ||.. .|+|+.|+.+++..|+..++.
T Consensus 166 ~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 215 (387)
T 2v1u_A 166 VWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAE 215 (387)
T ss_dssp --CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHH
Confidence 568899999988 789999998 9875 899999999999999998764
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.59 E-value=0.0013 Score=52.36 Aligned_cols=54 Identities=15% Similarity=0.145 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNY 64 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~ 64 (147)
+.|+..++... ..+.+|+|||.+..++++|++ ||. .|+|+.|+.+++..|+..+
T Consensus 124 ~~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 124 RHLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp HHHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 45666666543 347788999999999999999 996 6999999999877765544
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.59 E-value=0.0024 Score=50.80 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=36.9
Q ss_pred ceEEEEecCCCC-CCCccccCCCeeeeEEeecCC-CHHHHHHHHHHH
Q 042776 20 ERIIVFTTNHKN-RLDPALLRPGRMDMHIHMSYC-NPSGFRILVSNY 64 (147)
Q Consensus 20 ~vivi~aTN~p~-~LD~Al~RpGRfd~~i~~~~P-~~~~r~~il~~~ 64 (147)
.++||+|||..+ .|+++|++ ||+..++++.| +.+.+..|+..+
T Consensus 187 ~~~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 187 RFVLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp CEEEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 588999999744 89999999 99999999998 677787888764
No 50
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.57 E-value=0.0022 Score=56.43 Aligned_cols=61 Identities=18% Similarity=0.244 Sum_probs=46.0
Q ss_pred HHHHHHhhC---------CCCCCCCceEEEEecCCCC-------------CCCccccCCCeee-eEEeecCCCHHHHHHH
Q 042776 4 SGLLNFIDG---------LWSSCGDERIIVFTTNHKN-------------RLDPALLRPGRMD-MHIHMSYCNPSGFRIL 60 (147)
Q Consensus 4 ~~lL~~lDg---------l~~~~~~~vivi~aTN~p~-------------~LD~Al~RpGRfd-~~i~~~~P~~~~r~~i 60 (147)
+.|+..|+. .....+..+.||+|||.+. .|++||++ ||| ..+..+.|+.+ ...|
T Consensus 409 ~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i 485 (595)
T 3f9v_A 409 VAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DREL 485 (595)
T ss_dssp HHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHH
T ss_pred hhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHH
Confidence 556777763 2211124577999999987 99999999 999 56677899988 8889
Q ss_pred HHHHhCC
Q 042776 61 VSNYLGI 67 (147)
Q Consensus 61 l~~~l~~ 67 (147)
+++++..
T Consensus 486 ~~~il~~ 492 (595)
T 3f9v_A 486 ANYILDV 492 (595)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8888764
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.0091 Score=47.34 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=50.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCChHH-HHHHH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLFPE-IDELL 80 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i~~l~ 80 (147)
+.|+..|+... ....+|++||+++.++|++++ |+. .|.|+.|+.++...++..++.........+ +..++
T Consensus 151 ~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 151 SALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp HHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred HHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45666666543 235677789999999999999 887 899999999999999998875444333333 34443
No 52
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.51 E-value=0.00035 Score=49.85 Aligned_cols=40 Identities=20% Similarity=0.147 Sum_probs=35.1
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCCHHHHHHHH
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCNPSGFRILV 61 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il 61 (147)
..+.+|++||.+. .+|+++++ ||+ .|+|+.|+.+++.+|+
T Consensus 150 ~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 4577899999887 79999999 999 6999999999998875
No 53
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.42 E-value=0.0051 Score=48.97 Aligned_cols=75 Identities=17% Similarity=0.286 Sum_probs=51.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCC---CCCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHH-HH
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKN---RLDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPE-ID 77 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~---~LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i~ 77 (147)
..|+..++.+... +.++||++++.|. .++++|++ ||+ ..++|+. +.+++..|++.++.........+ +.
T Consensus 118 ~~l~~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~ 192 (324)
T 1l8q_A 118 IEFFHIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVID 192 (324)
T ss_dssp HHHHHHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 3455555554433 4567777777776 68999998 997 7788988 99999999998875443333333 44
Q ss_pred HHHHHH
Q 042776 78 ELLTKL 83 (147)
Q Consensus 78 ~l~~~l 83 (147)
.++...
T Consensus 193 ~l~~~~ 198 (324)
T 1l8q_A 193 YLLENT 198 (324)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 444433
No 54
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.40 E-value=0.016 Score=46.43 Aligned_cols=46 Identities=11% Similarity=0.332 Sum_probs=40.7
Q ss_pred CceEEEEecCCC---CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHK---NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p---~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
.++.||+|||.+ +.+++++++ ||...|+|+.|+.++...|+..++.
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~ 211 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAE 211 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHH
T ss_pred cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHH
Confidence 348899999988 789999998 9888999999999999999998764
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.33 E-value=0.0045 Score=55.39 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred HHHHHHHhhCCCCC-------CCCceEEEEecCCCCC------------CCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 3 LSGLLNFIDGLWSS-------CGDERIIVFTTNHKNR------------LDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 3 v~~lL~~lDgl~~~-------~~~~vivi~aTN~p~~------------LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
.+.||..||.-.-. .-.+++||+|||.+.. +.|+|+. |||..|.|+.|+.+.+..|+..
T Consensus 596 ~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~ 673 (758)
T 3pxi_A 596 FNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSL 673 (758)
T ss_dssp HHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHH
T ss_pred HHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHH
Confidence 46678888752210 0135789999997765 7888887 9999999999999999999988
Q ss_pred HhC
Q 042776 64 YLG 66 (147)
Q Consensus 64 ~l~ 66 (147)
++.
T Consensus 674 ~l~ 676 (758)
T 3pxi_A 674 MSD 676 (758)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.29 E-value=0.0078 Score=46.88 Aligned_cols=59 Identities=7% Similarity=0.093 Sum_probs=45.9
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCCCCCh-HHHHHHH
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGINDHNLF-PEIDELL 80 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~~~~~-~~i~~l~ 80 (147)
..+++|++||.+..+++++.+ |+. .+.|+.|+.+++..++..++........ ..+..++
T Consensus 131 ~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 190 (319)
T 2chq_A 131 KSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI 190 (319)
T ss_dssp SSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred CCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 458889999999999999998 876 8999999999999999988765443333 3344443
No 57
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.29 E-value=0.012 Score=52.32 Aligned_cols=54 Identities=22% Similarity=0.202 Sum_probs=42.4
Q ss_pred HHHhhCCCCCCCCceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 7 LNFIDGLWSSCGDERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 7 L~~lDgl~~~~~~~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.+.+..+-.. ..+.+|+|||.+ ..+||+|.| ||+ .|.|+.|+.+++..|++.+.
T Consensus 304 ~~~L~~~l~~--~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 304 ANLIKPLLSS--GKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHSSCSSS--CCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhC--CCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 3444444444 567889999965 368999999 999 69999999999999998655
No 58
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.24 E-value=0.0039 Score=63.38 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=39.8
Q ss_pred ceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 20 ERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 20 ~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
++.+|||||+| ..|||+++| || ..|+++.|+.+++..|+..++.
T Consensus 1384 ~i~lIaA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1384 RIHIVGACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CEEEEEecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 47899999999 489999999 99 8899999999999999987763
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.03 E-value=0.0055 Score=54.61 Aligned_cols=62 Identities=21% Similarity=0.273 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCC--CCC-----CceEEEEecCCCC-------------------------CCCccccCCCeeeeEEeec
Q 042776 3 LSGLLNFIDGLWS--SCG-----DERIIVFTTNHKN-------------------------RLDPALLRPGRMDMHIHMS 50 (147)
Q Consensus 3 v~~lL~~lDgl~~--~~~-----~~vivi~aTN~p~-------------------------~LD~Al~RpGRfd~~i~~~ 50 (147)
.+.||..||.-.- ..+ .+++||+|||.+. .++|+|+. |||..|.|+
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~ 651 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeC
Confidence 4677888874210 000 3478999999865 67899998 999999999
Q ss_pred CCCHHHHHHHHHHHhC
Q 042776 51 YCNPSGFRILVSNYLG 66 (147)
Q Consensus 51 ~P~~~~r~~il~~~l~ 66 (147)
.|+.+.+..|+..++.
T Consensus 652 ~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999998874
No 60
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.89 E-value=0.029 Score=44.71 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=47.2
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.+.|+..++... ..+++|++||.+..++++++. |+ ..+.|+.|+.++...++..++..
T Consensus 136 ~~~Ll~~le~~~----~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~ 193 (373)
T 1jr3_A 136 FNALLKTLEEPP----EHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNE 193 (373)
T ss_dssp HHHHHHHHHSCC----SSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC----CceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHH
Confidence 456777777542 458888999999999999988 76 78999999999999999988743
No 61
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.88 E-value=0.0052 Score=51.91 Aligned_cols=59 Identities=12% Similarity=0.273 Sum_probs=43.8
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCC---CCccccCCCeee--eEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNR---LDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~---LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..|+..++.+... +..+||++.+.|.. ++++|++ ||+ ..+.++.|+.+++..|+..++.
T Consensus 214 ~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 214 TELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp HHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 3456666655443 34555555555665 8899999 997 8899999999999999998874
No 62
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.83 E-value=0.013 Score=46.71 Aligned_cols=57 Identities=7% Similarity=0.087 Sum_probs=46.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
+.|+..|.... .+..+|++||.++.+.|++.. |+ ..+.|+.|+.++...++..++..
T Consensus 152 ~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~ 208 (354)
T 1sxj_E 152 AALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTN 208 (354)
T ss_dssp HHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHH
Confidence 55666676543 347788999999999999998 88 88999999999999999887643
No 63
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.82 E-value=0.017 Score=45.06 Aligned_cols=59 Identities=5% Similarity=0.011 Sum_probs=46.8
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
+.|+..|+... .++.+|++||.++.+++++.+ |+. .+.|+.|+.++...++..++....
T Consensus 128 ~~L~~~le~~~----~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 128 QALRRTMEMFS----SNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp HHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcC----CCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcC
Confidence 45666666532 447788899999999999988 887 789999999999999988875443
No 64
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.79 E-value=0.022 Score=44.28 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=43.9
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.|+..++... .++.+|++||.+..+++++.. |+. .+.|+.|+.++...++..++..
T Consensus 126 ~L~~~le~~~----~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~ 181 (323)
T 1sxj_B 126 ALRRTMELYS----NSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKL 181 (323)
T ss_dssp TTHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccC----CCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHH
Confidence 3455555422 457788899999999999988 665 8999999999999999887643
No 65
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.77 E-value=0.0071 Score=44.90 Aligned_cols=74 Identities=12% Similarity=0.123 Sum_probs=47.8
Q ss_pred HHHHHHhhCCCCCCCCce-EEEEecCCCC---CCCccccCCCeee--eEEeecCCCHHHHHHHHHHHhCCCCCCChHH-H
Q 042776 4 SGLLNFIDGLWSSCGDER-IIVFTTNHKN---RLDPALLRPGRMD--MHIHMSYCNPSGFRILVSNYLGINDHNLFPE-I 76 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~v-ivi~aTN~p~---~LD~Al~RpGRfd--~~i~~~~P~~~~r~~il~~~l~~~~~~~~~~-i 76 (147)
..|+..++.+... ..+ +|+.+++.+. .+++++.+ ||. ..|+|+.|+.+++..++..++.........+ +
T Consensus 124 ~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 199 (242)
T 3bos_A 124 EAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVG 199 (242)
T ss_dssp HHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 3455666655433 233 4555554554 56788988 886 9999999999999999998875443333333 3
Q ss_pred HHHHH
Q 042776 77 DELLT 81 (147)
Q Consensus 77 ~~l~~ 81 (147)
..++.
T Consensus 200 ~~l~~ 204 (242)
T 3bos_A 200 RFLLN 204 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 66
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.70 E-value=0.054 Score=42.88 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCC---CCCCccccCCCeee-eEEeecCCCHHHHHHHHHHHhC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHK---NRLDPALLRPGRMD-MHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p---~~LD~Al~RpGRfd-~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+..|+..++.+. +.++.+|++||.+ ..+++++.+ ||. +.|+|+.++.++...++..++.
T Consensus 149 l~~l~~~~~~~~---~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 149 LYKLSRINSEVN---KSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp HHHHHHHHHSCC---C--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred HHHHhhchhhcC---CCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 345666676652 2568899999987 578899888 775 5899999999999999988663
No 67
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.66 E-value=0.0019 Score=54.04 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=33.0
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSY 51 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~ 51 (147)
+.+.+.+||. +.|+++||||+.+ ++++||||+|..+++..
T Consensus 245 ~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 245 DNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 4566777763 4578899999999 89999999999988855
No 68
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.62 E-value=0.027 Score=48.73 Aligned_cols=60 Identities=22% Similarity=0.259 Sum_probs=42.1
Q ss_pred HHHHHHHhh-------CCCCCCCCceEEEEecCCCCC---CCccccCCCeeeeEEeecCCCH-HHHHHHHHHHh
Q 042776 3 LSGLLNFID-------GLWSSCGDERIIVFTTNHKNR---LDPALLRPGRMDMHIHMSYCNP-SGFRILVSNYL 65 (147)
Q Consensus 3 v~~lL~~lD-------gl~~~~~~~vivi~aTN~p~~---LD~Al~RpGRfd~~i~~~~P~~-~~r~~il~~~l 65 (147)
.+.||..|+ |.... ....++|+|||.+.. +.+|+++ ||..+|+++.|+. +++..|+..+.
T Consensus 126 q~~LL~~lee~~v~i~G~~~~-~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 126 LNTLLTAINERQFRNGAHVEK-IPMRLLVAASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp HHHHHHHHHSSEEECSSSEEE-CCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhccCCCCcCC-cchhhhhhccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 356777775 33211 133467888886433 4459999 9999999999997 77889988765
No 69
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=95.50 E-value=0.0065 Score=40.49 Aligned_cols=52 Identities=8% Similarity=-0.061 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHhCCCCCCChHHHHHHHH---HHhccchHHHHHHHHHHHHHHhh
Q 042776 53 NPSGFRILVSNYLGINDHNLFPEIDELLT---KLMKSEVAEVALEGLVEFLKRKK 104 (147)
Q Consensus 53 ~~~~r~~il~~~l~~~~~~~~~~i~~l~~---~l~~~~~~~~al~~~~~~l~~~~ 104 (147)
|.++|.+||+.|+...+.....++..++. +|+|+|....|.++.+.+++...
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 56789999999998765544445566655 89999999999999999887643
No 70
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.13 E-value=0.065 Score=43.11 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.+.||..|+.- ..+.++|++||.|+.|.|+++. |+. .+.|+.|+.++...++....
T Consensus 125 ~naLLk~lEep----~~~~~~Il~t~~~~~l~~ti~S--Rc~-~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 125 ANALLKTLEEP----PAETWFFLATREPERLLATLRS--RCR-LHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp HHHHHHHHTSC----CTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHhcCC----CCCeEEEEEeCChHhCcHHHhh--cce-eeeCCCCCHHHHHHHHHHhc
Confidence 46677777753 2558888899999999999998 774 69999999999999998876
No 71
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.94 E-value=0.0021 Score=45.80 Aligned_cols=32 Identities=25% Similarity=0.162 Sum_probs=27.5
Q ss_pred CceEEEEecCCCC-----CCCccccCCCeeeeEEeecCCC
Q 042776 19 DERIIVFTTNHKN-----RLDPALLRPGRMDMHIHMSYCN 53 (147)
Q Consensus 19 ~~vivi~aTN~p~-----~LD~Al~RpGRfd~~i~~~~P~ 53 (147)
..+++|++||.+. .+|+++++ ||+. |+++.|+
T Consensus 151 ~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 151 GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 4577999999876 69999999 9995 9999886
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.90 E-value=0.011 Score=53.75 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=38.1
Q ss_pred CceEEEEecCCCC----CCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN----RLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~----~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..+.+|+|||.++ .+|++|.| ||+. |+|+.|+.+++..|++.++
T Consensus 298 ~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 298 GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLK 345 (854)
T ss_dssp TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHH
T ss_pred CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhh
Confidence 4577999999775 58999999 9996 9999999999999998655
No 73
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.54 E-value=0.075 Score=45.05 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHhhCCCCCCCCceEEEEec--CCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCC
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTT--NHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGI 67 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aT--N~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~ 67 (147)
.||..|+. ..+++|++| |....|+++|++ |+. .+.|..|+.+++..++..++..
T Consensus 125 ~LL~~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 125 AFLPHIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp CCHHHHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 34555553 236677666 555689999999 887 6779999999999999998764
No 74
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=94.54 E-value=0.009 Score=38.96 Aligned_cols=51 Identities=8% Similarity=0.160 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHhCCCCCCChHHHHHHHH---HHhccchHHHHHHHHHHHHHHh
Q 042776 53 NPSGFRILVSNYLGINDHNLFPEIDELLT---KLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 53 ~~~~r~~il~~~l~~~~~~~~~~i~~l~~---~l~~~~~~~~al~~~~~~l~~~ 103 (147)
|.++|.+||+.|++..+.....++..++. +|+|+|....|-++.+..++..
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 67899999999998765443444555554 9999999999999988887654
No 75
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.46 E-value=0.12 Score=42.13 Aligned_cols=46 Identities=9% Similarity=0.148 Sum_probs=37.4
Q ss_pred CceEEEEecCCCCC----CCccccCCCeee-eEEeecCCCHHHHHHHHHHHhC
Q 042776 19 DERIIVFTTNHKNR----LDPALLRPGRMD-MHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 19 ~~vivi~aTN~p~~----LD~Al~RpGRfd-~~i~~~~P~~~~r~~il~~~l~ 66 (147)
..++||+++|..+. |++++.. ||. ..|+|+.++.++...|++..+.
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 56889999998875 4555666 786 6899999999999999987764
No 76
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.16 E-value=0.11 Score=42.10 Aligned_cols=29 Identities=10% Similarity=0.241 Sum_probs=26.1
Q ss_pred CCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 33 LDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 33 LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
+.|+|+. |||..+.|..|+.+.+..|+..
T Consensus 239 ~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 239 LIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788886 9999999999999999999876
No 77
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.93 E-value=0.18 Score=40.23 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=43.2
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIN 68 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~ 68 (147)
+.|+..|+... ....+|++||.++.+.|+++. |+. .+.|..++.++...++...+...
T Consensus 128 ~~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~ 185 (340)
T 1sxj_C 128 NALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHE 185 (340)
T ss_dssp HHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHc
Confidence 34555555432 336677889999999999998 886 68898888888888888777433
No 78
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.91 E-value=0.1 Score=41.62 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=45.4
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCC---CCCCccccCCCeeee-EEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHK---NRLDPALLRPGRMDM-HIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p---~~LD~Al~RpGRfd~-~i~~~~P~~~~r~~il~~~l~ 66 (147)
..|+..++.+......++.||++||.+ +.+++.+.+ ||.. .|+|+.++.++...++...+.
T Consensus 143 ~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~ 207 (389)
T 1fnn_A 143 STFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAK 207 (389)
T ss_dssp HHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHH
Confidence 445555554432000357899999988 788999888 8875 899999999999999987764
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.22 E-value=0.09 Score=42.28 Aligned_cols=44 Identities=11% Similarity=0.211 Sum_probs=40.1
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.++++||++..|++++++ ||...+.|+.|+.+++.+|++.+..
T Consensus 151 ~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 151 FTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp CEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999 9999999999999999999987754
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.28 E-value=0.11 Score=47.10 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=45.6
Q ss_pred HHHHHHHhhCCCCC--C-----CCceEEEEecCCC--------------------------CCCCccccCCCeeeeEEee
Q 042776 3 LSGLLNFIDGLWSS--C-----GDERIIVFTTNHK--------------------------NRLDPALLRPGRMDMHIHM 49 (147)
Q Consensus 3 v~~lL~~lDgl~~~--~-----~~~vivi~aTN~p--------------------------~~LD~Al~RpGRfd~~i~~ 49 (147)
.+.||..||.-.-. . -.+.+||+|||.+ ..+.|+|+. |||..+.|
T Consensus 677 ~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~~ 754 (854)
T 1qvr_A 677 FNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVF 754 (854)
T ss_dssp HHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCBC
T ss_pred HHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEeC
Confidence 46788888843210 0 0357899999973 245666666 99999999
Q ss_pred cCCCHHHHHHHHHHHhC
Q 042776 50 SYCNPSGFRILVSNYLG 66 (147)
Q Consensus 50 ~~P~~~~r~~il~~~l~ 66 (147)
..|+.+....|+.+++.
T Consensus 755 ~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 755 RPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 99999999999988874
No 81
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=90.83 E-value=0.49 Score=39.63 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=30.3
Q ss_pred CCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 30 KNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 30 p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
|+.|+|.++- ||-. +.|+.++.++..++++....
T Consensus 347 ~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~ 380 (456)
T 2c9o_A 347 PHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQ 380 (456)
T ss_dssp ETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHH
T ss_pred cccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHH
Confidence 8899999999 9987 69999999999999987764
No 82
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.61 E-value=0.2 Score=40.24 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
.|.||..|+--. ...++|++||.|+.|-|+++. | .+.|..|+.++...++...+
T Consensus 99 ~naLLk~LEep~----~~t~fIl~t~~~~kl~~tI~S--R---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 99 ANAFLKALEEPP----EYAVIVLNTRRWHYLLPTIKS--R---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTHHHHHSCC----TTEEEEEEESCGGGSCHHHHT--T---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC----CCeEEEEEECChHhChHHHHc--e---eEeCCCCCHHHHHHHHHHHh
Confidence 356777777432 457788888889999999998 7 89999999999999988776
No 83
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=89.48 E-value=0.51 Score=38.12 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=21.3
Q ss_pred CCccccCCCeeeeEEeecCCCHHHHHHHHH
Q 042776 33 LDPALLRPGRMDMHIHMSYCNPSGFRILVS 62 (147)
Q Consensus 33 LD~Al~RpGRfd~~i~~~~P~~~~r~~il~ 62 (147)
+.|+|+. ||+..|.|+.++.+....|+.
T Consensus 256 ~~p~l~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 256 LIPELIG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp CCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred CChHHhc--CCCceeeccCCCHHHHHHHHh
Confidence 3455555 788889999889888888886
No 84
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.21 E-value=1.2 Score=37.95 Aligned_cols=55 Identities=11% Similarity=0.153 Sum_probs=34.7
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLG 66 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~ 66 (147)
+.|+..++... ..+++|+++..+..|.+ +. |+...|.|+.|+.+++..++..++.
T Consensus 169 ~~L~~~l~~~~----~~iIli~~~~~~~~l~~-l~---~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 169 GQLAQFCRKTS----TPLILICNERNLPKMRP-FD---RVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp HHHHHHHHHCS----SCEEEEESCTTSSTTGG-GT---TTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC----CCEEEEEcCCCCccchh-hH---hceEEEEeCCCCHHHHHHHHHHHHH
Confidence 45555555421 23555554444444543 43 5566899999999999999987663
No 85
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=87.73 E-value=0.028 Score=36.67 Aligned_cols=49 Identities=8% Similarity=0.014 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCCC---CChHHHHHHHHHHhccchHHHHHHHHHHHHHHh
Q 042776 55 SGFRILVSNYLGINDH---NLFPEIDELLTKLMKSEVAEVALEGLVEFLKRK 103 (147)
Q Consensus 55 ~~r~~il~~~l~~~~~---~~~~~i~~l~~~l~~~~~~~~al~~~~~~l~~~ 103 (147)
++|.+||+.|+...+. .+...++..+.+|+|+|....|-++.+..++..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~ 52 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN 52 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4689999999876543 233344444559999999999999999988764
No 86
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=84.46 E-value=1.1 Score=38.26 Aligned_cols=56 Identities=18% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHHHHHhhCCCCC------CCCceEEEEec----CCCCCCCccccCCCeeeeEEeecCCCHHHHHHHH
Q 042776 4 SGLLNFIDGLWSS------CGDERIIVFTT----NHKNRLDPALLRPGRMDMHIHMSYCNPSGFRILV 61 (147)
Q Consensus 4 ~~lL~~lDgl~~~------~~~~vivi~aT----N~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il 61 (147)
..||..|||-... ..+++++|+|. +.|.++-|.|+- ||+..|.|+-.+.++..+|+
T Consensus 280 ~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il 345 (444)
T 1g41_A 280 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERIL 345 (444)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHH
T ss_pred HHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHH
Confidence 3689999984211 12568888886 356666688776 99999999999999999998
No 87
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.03 E-value=0.58 Score=37.15 Aligned_cols=43 Identities=14% Similarity=0.282 Sum_probs=25.7
Q ss_pred ceEEEEecCCC-------CCCCccccCCCeeeeEEeecCCCHHHH----HHHHHHHh
Q 042776 20 ERIIVFTTNHK-------NRLDPALLRPGRMDMHIHMSYCNPSGF----RILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p-------~~LD~Al~RpGRfd~~i~~~~P~~~~r----~~il~~~l 65 (147)
.+.||+|||++ ..++++|.. ||. .+.+.+|...+| ..++.+|+
T Consensus 137 ~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~-~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 137 DVRLIAATHRDLAEEVSAGRFRQDLYY--RLN-VVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHS-SEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CeEEEEecCccHHHHHHhCCcHHHHHh--hcC-eeEEeccCHHHhHhhHHHHHHHHH
Confidence 47799999986 234455555 554 556666765544 34555554
No 88
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=81.41 E-value=0.84 Score=36.50 Aligned_cols=45 Identities=4% Similarity=0.193 Sum_probs=34.6
Q ss_pred CceEEEEecCCCC---CCC---ccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 19 DERIIVFTTNHKN---RLD---PALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 19 ~~vivi~aTN~p~---~LD---~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
..+.||++||.++ .++ +.+.+ ||...|+|+.++.++..+++..++
T Consensus 178 ~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 178 NRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp CBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHH
Confidence 4578888998776 345 66666 565569999999999999997665
No 89
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=76.20 E-value=2.7 Score=43.91 Aligned_cols=43 Identities=14% Similarity=0.199 Sum_probs=37.6
Q ss_pred ceEEEEecCCC-----CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHh
Q 042776 20 ERIIVFTTNHK-----NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p-----~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l 65 (147)
++.+|+|+|.| ..|+|+++| ||-. |+++.|+.+....|+..++
T Consensus 1422 d~~~vaamnPp~~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1422 KIQFVGACNPPTDAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp SEEEEEEECCTTSTTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHH
Confidence 46789999988 579999999 9988 9999999999999987654
No 90
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=74.16 E-value=1.6 Score=33.20 Aligned_cols=43 Identities=12% Similarity=0.142 Sum_probs=27.8
Q ss_pred ceEEEEecCCC-------CCCCccccCCCeeeeEEeecCCCHHH----HHHHHHHHh
Q 042776 20 ERIIVFTTNHK-------NRLDPALLRPGRMDMHIHMSYCNPSG----FRILVSNYL 65 (147)
Q Consensus 20 ~vivi~aTN~p-------~~LD~Al~RpGRfd~~i~~~~P~~~~----r~~il~~~l 65 (147)
.+.||+|||.+ ..++++|.. ||+. +.+.+|.... ...++.+|+
T Consensus 141 ~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~-~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 141 NVRLVCATNADLPAMVNEGTFRADLLD--ALAF-DVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CCEEEEEESSCHHHHHHHTSSCHHHHH--HHCS-EEEECCCGGGCHHHHHHHHHHHH
T ss_pred CeEEEEecCcCHHHHHHcCCccHHHHH--hhcC-cEEeCCChhhhhHHHHHHHHHHH
Confidence 46789999975 247788888 8864 4556666544 344444443
No 91
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=73.56 E-value=2.1 Score=32.16 Aligned_cols=36 Identities=19% Similarity=0.100 Sum_probs=30.0
Q ss_pred CceEEEEecCCCCCCCccccCCCeeeeEEeecCCCHHH
Q 042776 19 DERIIVFTTNHKNRLDPALLRPGRMDMHIHMSYCNPSG 56 (147)
Q Consensus 19 ~~vivi~aTN~p~~LD~Al~RpGRfd~~i~~~~P~~~~ 56 (147)
.+.-||.+|+.+..||.+++. |++.++++..|....
T Consensus 122 ~~~~iil~tq~~~~l~~~lr~--ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 122 QGIDIFVLTQGPKLLDQNLRT--LVRKHYHIASNKMGM 157 (199)
T ss_dssp TTCEEEEEESCGGGBCHHHHT--TEEEEEEEEECSSCC
T ss_pred CCeEEEEECCCHHHHhHHHHH--HhheEEEEcCcccCc
Confidence 456788888999999999988 999999998765443
No 92
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=64.08 E-value=2.5 Score=36.66 Aligned_cols=62 Identities=19% Similarity=0.227 Sum_probs=38.0
Q ss_pred ceEEEEecCCC--CCCCccccCCCeee---eEEeecC--CC-HHHHHHHHHHHh---C---CCCCCChHHHHHHHHHH
Q 042776 20 ERIIVFTTNHK--NRLDPALLRPGRMD---MHIHMSY--CN-PSGFRILVSNYL---G---INDHNLFPEIDELLTKL 83 (147)
Q Consensus 20 ~vivi~aTN~p--~~LD~Al~RpGRfd---~~i~~~~--P~-~~~r~~il~~~l---~---~~~~~~~~~i~~l~~~l 83 (147)
.+.||+|||+. +.++|+|++ ||+ ..+.|+. ++ .+....+++.+. + .........+..++..+
T Consensus 252 ~~~vI~atn~~~~~~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 252 DFVLVAAGNLDTVDKMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp CCEEEEEECHHHHHHSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred eEEEEEecCHHHHhhcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 46799999987 789999999 997 5666542 22 334444443322 1 22333455666676644
No 93
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=56.08 E-value=2.5 Score=34.75 Aligned_cols=32 Identities=19% Similarity=0.193 Sum_probs=25.8
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCCCCCCccc
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHKNRLDPAL 37 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p~~LD~Al 37 (147)
+.++|..|+++... .++.+|++|| |..+|+++
T Consensus 211 lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 211 AFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred HHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 67888899888665 5688899999 78888885
No 94
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=43.95 E-value=34 Score=26.71 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=36.5
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCC------CCCCccccCCCeeeeEEeecCCCHHHHHHHHHHHhCCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHK------NRLDPALLRPGRMDMHIHMSYCNPSGFRILVSNYLGIND 69 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p------~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~~l~~~~ 69 (147)
+.|+..+.... .+.++|.+|+.+ ..+-+++.. |. ..+.|..|+..+...++...+....
T Consensus 95 ~aLl~~le~p~----~~~~~il~~~~~~~~~~~~k~~~~i~s--r~-~~~~~~~l~~~~l~~~l~~~~~~~g 159 (343)
T 1jr3_D 95 EQLLTLTGLLH----DDLLLIVRGNKLSKAQENAAWFTALAN--RS-VQVTCQTPEQAQLPRWVAARAKQLN 159 (343)
T ss_dssp HHHHHHHTTCB----TTEEEEEEESCCCTTTTTSHHHHHHTT--TC-EEEEECCCCTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCC----CCeEEEEEcCCCChhhHhhHHHHHHHh--Cc-eEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 45666666433 335555544443 345667665 33 4688888888888888887765433
No 95
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=38.90 E-value=13 Score=32.31 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=23.7
Q ss_pred CceEEEEecCCCC-----------CCCccccCCCeeeeEE-eecCCCHHH
Q 042776 19 DERIIVFTTNHKN-----------RLDPALLRPGRMDMHI-HMSYCNPSG 56 (147)
Q Consensus 19 ~~vivi~aTN~p~-----------~LD~Al~RpGRfd~~i-~~~~P~~~~ 56 (147)
....||||+|... .|.++++- |||..+ .++.|+.+.
T Consensus 338 arf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 338 ARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp CCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred CCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 4477999999765 78899998 999754 456777554
No 96
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=28.53 E-value=45 Score=34.53 Aligned_cols=41 Identities=12% Similarity=0.174 Sum_probs=33.4
Q ss_pred ceEEEEecC----CCCCCCccccCCCeeeeEEeecCCCHHHHHHHHHH
Q 042776 20 ERIIVFTTN----HKNRLDPALLRPGRMDMHIHMSYCNPSGFRILVSN 63 (147)
Q Consensus 20 ~vivi~aTN----~p~~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~~ 63 (147)
...|++|.| .-..|+++|.+ || +.|.|..||.+...+|+-.
T Consensus 747 ~~~vfiT~NPgy~g~~eLP~~Lk~--~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 747 HTAVFITLNPGYNGRSELPENLKK--SF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp TCEEEEEECCCSSSSCCCCHHHHT--TE-EEEECCCCCHHHHHHHHHH
T ss_pred CceEEEEeCCCccCcccccHHHHh--he-EEEEeeCCCHHHHHHHHHH
Confidence 355778888 56689999998 88 7899999999998888543
No 97
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3
Probab=26.77 E-value=69 Score=23.42 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=30.2
Q ss_pred eEEEEecCCCCCCCccccCCCeeeeEEeec---CCCHHHHHHHHHHHh
Q 042776 21 RIIVFTTNHKNRLDPALLRPGRMDMHIHMS---YCNPSGFRILVSNYL 65 (147)
Q Consensus 21 vivi~aTN~p~~LD~Al~RpGRfd~~i~~~---~P~~~~r~~il~~~l 65 (147)
++||+. |+-|+++++. |-|..+-|+ +|-.=.|.-++++.+
T Consensus 98 ~FvIGG---a~Gl~~~v~~--rAd~~lSlS~mTfpHqL~RliL~EQiY 140 (163)
T 1o6d_A 98 TILIGG---PYGLNEEIFA--KAHRVFSLSKMTFTHGMTVLIVLEQIF 140 (163)
T ss_dssp EEEECC---TTCCCGGGGG--GCSEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred EEEEEC---CCCCCHHHHH--hhCceEEccCCCCcHHHHHHHHHHHHH
Confidence 456655 8889999999 999999987 466566666666554
No 98
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=26.72 E-value=77 Score=27.75 Aligned_cols=41 Identities=7% Similarity=0.129 Sum_probs=35.2
Q ss_pred CceEEEEecCCCC--CCCccccCCCeeeeEEeecCCCHHHHHHHH
Q 042776 19 DERIIVFTTNHKN--RLDPALLRPGRMDMHIHMSYCNPSGFRILV 61 (147)
Q Consensus 19 ~~vivi~aTN~p~--~LD~Al~RpGRfd~~i~~~~P~~~~r~~il 61 (147)
-|+.+|+||-+|. .|+..++- -|..+|.|.+.+......|+
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHH
T ss_pred CCeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhc
Confidence 5699999999998 78877765 68899999999998888887
No 99
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=25.09 E-value=66 Score=27.64 Aligned_cols=42 Identities=10% Similarity=0.142 Sum_probs=35.2
Q ss_pred CceEEEEecCCCC--CCCccccCCCeeeeEEeecCCCHHHHHHHHH
Q 042776 19 DERIIVFTTNHKN--RLDPALLRPGRMDMHIHMSYCNPSGFRILVS 62 (147)
Q Consensus 19 ~~vivi~aTN~p~--~LD~Al~RpGRfd~~i~~~~P~~~~r~~il~ 62 (147)
-|+.+|++|.+|. .|+..++. -|..+|.|.+.+....+.|+.
T Consensus 331 ~GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 331 AGIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp GTEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHS
T ss_pred CCcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcC
Confidence 3688999999998 57776666 799999999999999888874
No 100
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=23.83 E-value=9.3 Score=26.27 Aligned_cols=23 Identities=9% Similarity=-0.008 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCCCCCceEEEEecCCC
Q 042776 5 GLLNFIDGLWSSCGDERIIVFTTNHK 30 (147)
Q Consensus 5 ~lL~~lDgl~~~~~~~vivi~aTN~p 30 (147)
.|+..|+.-. . .++.+|+|||++
T Consensus 94 ~Ll~~l~~~~-~--~~~~iI~~tn~~ 116 (143)
T 3co5_A 94 GITFIIGKAE-R--CRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHHHT-T--TTCEEEEEEEEC
T ss_pred HHHHHHHhCC-C--CCEEEEEecCCC
Confidence 3555555432 1 447788999965
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.10 E-value=19 Score=35.62 Aligned_cols=25 Identities=12% Similarity=0.246 Sum_probs=20.0
Q ss_pred HHHHHHHhhCCCCCCCCceEEEEecCCC
Q 042776 3 LSGLLNFIDGLWSSCGDERIIVFTTNHK 30 (147)
Q Consensus 3 v~~lL~~lDgl~~~~~~~vivi~aTN~p 30 (147)
|+++|..|||+... .+|+|| +||+.
T Consensus 1194 ~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1194 MSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred HHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 79999999998776 557666 88865
No 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=20.27 E-value=66 Score=21.70 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=14.3
Q ss_pred HHHHHHhhCCCCCCCCceEEEEecCCC
Q 042776 4 SGLLNFIDGLWSSCGDERIIVFTTNHK 30 (147)
Q Consensus 4 ~~lL~~lDgl~~~~~~~vivi~aTN~p 30 (147)
..|+..|.... ..+.+|+|||++
T Consensus 94 ~~Ll~~l~~~~----~~~~~I~~t~~~ 116 (145)
T 3n70_A 94 YHLVQLQSQEH----RPFRLIGIGDTS 116 (145)
T ss_dssp HHHHHHHHSSS----CSSCEEEEESSC
T ss_pred HHHHHHHhhcC----CCEEEEEECCcC
Confidence 35666664432 336688999974
Done!