Query 042777
Match_columns 482
No_of_seqs 129 out of 134
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:21:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/042777.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/042777hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05701 WEMBL: Weak chloropla 100.0 1.3E-67 2.8E-72 567.9 53.4 406 2-416 35-522 (522)
2 PF05701 WEMBL: Weak chloropla 99.0 7.1E-05 1.5E-09 82.0 45.7 282 26-326 31-348 (522)
3 TIGR02168 SMC_prok_B chromosom 97.4 0.42 9.2E-06 56.0 40.6 13 357-369 992-1004(1179)
4 COG1196 Smc Chromosome segrega 97.4 0.56 1.2E-05 56.5 45.3 195 10-224 167-364 (1163)
5 TIGR02168 SMC_prok_B chromosom 97.3 0.6 1.3E-05 54.8 40.6 9 356-364 980-988 (1179)
6 COG1196 Smc Chromosome segrega 97.0 1.5 3.2E-05 53.0 39.7 49 9-57 668-716 (1163)
7 TIGR02169 SMC_prok_A chromosom 96.9 1.3 2.9E-05 52.1 45.5 42 11-52 166-207 (1164)
8 PRK02224 chromosome segregatio 96.9 1.3 2.8E-05 51.4 54.8 39 179-220 408-446 (880)
9 TIGR02169 SMC_prok_A chromosom 96.9 1.5 3.3E-05 51.7 47.9 41 21-61 169-209 (1164)
10 PF07888 CALCOCO1: Calcium bin 96.7 1.5 3.2E-05 48.8 38.2 24 128-151 295-318 (546)
11 PF00261 Tropomyosin: Tropomyo 96.6 0.81 1.8E-05 45.3 28.5 158 2-164 9-168 (237)
12 TIGR00606 rad50 rad50. This fa 96.4 3.9 8.5E-05 50.0 46.2 65 7-71 743-813 (1311)
13 PF00038 Filament: Intermediat 96.3 1.5 3.2E-05 44.6 32.8 253 6-304 52-305 (312)
14 PF00261 Tropomyosin: Tropomyo 95.7 2.5 5.4E-05 41.9 28.2 46 27-72 6-51 (237)
15 KOG4674 Uncharacterized conser 95.5 10 0.00022 47.7 34.4 226 3-249 807-1041(1822)
16 KOG0977 Nuclear envelope prote 95.5 5.6 0.00012 44.4 31.2 270 8-306 92-387 (546)
17 KOG0996 Structural maintenance 95.4 8.4 0.00018 46.3 36.9 49 263-311 551-599 (1293)
18 PF12128 DUF3584: Protein of u 95.4 9.4 0.0002 46.4 36.2 56 424-479 504-561 (1201)
19 PF12128 DUF3584: Protein of u 95.0 12 0.00025 45.7 40.0 111 4-116 603-713 (1201)
20 KOG0250 DNA repair protein RAD 94.2 16 0.00035 43.6 37.9 272 3-304 209-490 (1074)
21 COG4372 Uncharacterized protei 94.1 10 0.00022 40.8 28.7 159 2-196 75-237 (499)
22 PRK11637 AmiB activator; Provi 94.0 10 0.00022 40.7 28.3 67 6-72 45-111 (428)
23 KOG0971 Microtubule-associated 93.9 17 0.00037 42.8 34.7 254 37-296 232-546 (1243)
24 KOG0999 Microtubule-associated 93.9 13 0.00029 41.5 26.9 246 134-440 5-259 (772)
25 PF10174 Cast: RIM-binding pro 93.8 17 0.00036 42.5 49.6 67 3-69 247-313 (775)
26 PRK02224 chromosome segregatio 92.9 23 0.0005 41.2 56.9 28 414-441 650-677 (880)
27 KOG0161 Myosin class II heavy 92.5 40 0.00086 43.2 55.6 75 86-160 1475-1549(1930)
28 TIGR00606 rad50 rad50. This fa 92.0 38 0.00082 41.7 53.0 47 263-309 883-929 (1311)
29 KOG0971 Microtubule-associated 91.7 34 0.00074 40.5 32.3 120 183-311 318-439 (1243)
30 KOG0994 Extracellular matrix g 91.6 39 0.00085 41.0 28.6 92 120-225 1644-1735(1758)
31 PRK03918 chromosome segregatio 91.3 34 0.00073 39.7 46.4 45 180-224 529-573 (880)
32 COG1579 Zn-ribbon protein, pos 91.0 19 0.00041 36.3 19.7 118 180-301 28-150 (239)
33 KOG0996 Structural maintenance 88.8 65 0.0014 39.2 36.2 74 238-311 519-592 (1293)
34 PF07888 CALCOCO1: Calcium bin 88.4 48 0.0011 37.2 42.8 86 352-439 365-453 (546)
35 PF11570 E2R135: Coiled-coil r 88.0 11 0.00023 34.7 11.6 116 2-129 16-132 (136)
36 KOG0161 Myosin class II heavy 87.7 96 0.0021 39.9 56.8 72 86-157 955-1026(1930)
37 PF10473 CENP-F_leu_zip: Leuci 87.6 24 0.00051 32.8 19.6 72 24-119 5-83 (140)
38 KOG0999 Microtubule-associated 87.5 55 0.0012 36.9 31.5 209 26-286 5-219 (772)
39 PF01576 Myosin_tail_1: Myosin 87.0 0.19 4.1E-06 58.7 0.0 37 401-437 523-559 (859)
40 PF10174 Cast: RIM-binding pro 86.4 74 0.0016 37.3 50.3 50 390-440 431-481 (775)
41 PF10498 IFT57: Intra-flagella 84.9 32 0.00069 36.6 15.2 132 168-300 183-346 (359)
42 PRK11637 AmiB activator; Provi 84.6 61 0.0013 34.8 28.7 67 3-69 49-115 (428)
43 PF01576 Myosin_tail_1: Myosin 84.6 0.3 6.4E-06 57.1 0.0 26 142-167 354-379 (859)
44 PF00038 Filament: Intermediat 84.4 50 0.0011 33.5 38.9 33 86-118 87-119 (312)
45 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.0 36 0.00077 30.8 17.8 37 89-125 53-89 (132)
46 PF10498 IFT57: Intra-flagella 80.6 84 0.0018 33.5 17.7 39 76-116 217-255 (359)
47 PF09726 Macoilin: Transmembra 79.0 1.3E+02 0.0029 34.8 26.4 39 86-124 472-510 (697)
48 KOG0933 Structural maintenance 77.6 1.7E+02 0.0037 35.3 34.6 83 89-175 735-825 (1174)
49 TIGR03185 DNA_S_dndD DNA sulfu 77.1 1.4E+02 0.003 34.0 33.4 68 3-71 184-251 (650)
50 PF09730 BicD: Microtubule-ass 75.3 1.7E+02 0.0037 34.1 21.9 173 9-226 266-459 (717)
51 KOG1853 LIS1-interacting prote 74.7 1.1E+02 0.0023 31.5 16.2 88 136-224 65-157 (333)
52 KOG0964 Structural maintenance 74.2 2.1E+02 0.0045 34.6 38.7 148 20-167 151-302 (1200)
53 PHA02562 46 endonuclease subun 73.3 1.5E+02 0.0032 32.5 31.0 29 86-114 218-246 (562)
54 KOG4674 Uncharacterized conser 72.4 2.9E+02 0.0064 35.6 48.6 257 29-306 661-957 (1822)
55 PHA02562 46 endonuclease subun 70.2 1.7E+02 0.0037 32.0 29.0 22 203-224 258-279 (562)
56 KOG0804 Cytoplasmic Zn-finger 67.7 2E+02 0.0044 31.8 16.8 41 178-218 412-453 (493)
57 KOG0994 Extracellular matrix g 66.6 3.3E+02 0.0071 33.8 39.2 111 110-224 1515-1629(1758)
58 PRK04778 septation ring format 65.2 2.4E+02 0.0051 31.7 33.2 278 25-320 194-505 (569)
59 COG1579 Zn-ribbon protein, pos 65.2 1.6E+02 0.0035 29.8 21.8 26 132-157 112-137 (239)
60 PF05557 MAD: Mitotic checkpoi 64.3 2.2 4.8E-05 48.9 0.0 39 188-226 286-324 (722)
61 COG4372 Uncharacterized protei 63.8 2.3E+02 0.0049 30.9 29.4 97 2-108 82-178 (499)
62 PF09726 Macoilin: Transmembra 63.0 3E+02 0.0064 32.1 27.6 131 20-151 451-601 (697)
63 PRK04863 mukB cell division pr 58.9 4.8E+02 0.01 33.2 37.4 59 5-63 283-341 (1486)
64 PF08317 Spc7: Spc7 kinetochor 57.8 2.4E+02 0.0052 29.3 21.1 45 262-306 210-254 (325)
65 KOG0964 Structural maintenance 57.8 4.2E+02 0.0092 32.2 37.6 207 4-224 187-428 (1200)
66 PF06818 Fez1: Fez1; InterPro 57.5 1E+02 0.0022 30.5 10.0 36 263-298 68-103 (202)
67 PF05557 MAD: Mitotic checkpoi 57.2 55 0.0012 37.7 9.6 56 99-154 340-395 (722)
68 KOG4403 Cell surface glycoprot 56.4 3.1E+02 0.0068 30.3 14.7 116 200-328 246-374 (575)
69 PF10473 CENP-F_leu_zip: Leuci 54.1 1.9E+02 0.0041 27.0 19.9 68 90-157 12-79 (140)
70 KOG0980 Actin-binding protein 50.8 5.1E+02 0.011 31.1 30.3 30 19-48 341-370 (980)
71 COG4942 Membrane-bound metallo 48.8 4E+02 0.0087 29.2 28.0 68 3-70 40-107 (420)
72 PF09787 Golgin_A5: Golgin sub 48.2 4.2E+02 0.0092 29.4 25.7 129 92-227 113-241 (511)
73 PF15294 Leu_zip: Leucine zipp 45.8 3.7E+02 0.0079 27.9 14.0 35 96-130 140-174 (278)
74 PRK09039 hypothetical protein; 43.9 4.1E+02 0.0089 28.0 19.3 36 78-115 122-157 (343)
75 KOG0977 Nuclear envelope prote 43.7 5.4E+02 0.012 29.2 29.9 37 2-38 43-79 (546)
76 PF12325 TMF_TATA_bd: TATA ele 43.6 2.5E+02 0.0054 25.4 13.3 19 211-229 93-111 (120)
77 PRK10246 exonuclease subunit S 42.5 7.1E+02 0.015 30.3 30.3 29 130-158 770-798 (1047)
78 PF12718 Tropomyosin_1: Tropom 41.8 2.9E+02 0.0062 25.5 19.3 73 119-195 69-141 (143)
79 PF00769 ERM: Ezrin/radixin/mo 41.6 3.8E+02 0.0082 26.9 18.4 48 5-52 2-49 (246)
80 KOG1003 Actin filament-coating 41.3 3.7E+02 0.008 26.7 25.1 187 96-298 12-202 (205)
81 TIGR01843 type_I_hlyD type I s 41.2 4.3E+02 0.0093 27.4 16.5 105 7-116 129-238 (423)
82 KOG0978 E3 ubiquitin ligase in 40.8 6.6E+02 0.014 29.4 33.3 65 92-156 451-515 (698)
83 KOG0933 Structural maintenance 40.7 7.7E+02 0.017 30.2 33.5 137 86-226 263-418 (1174)
84 PF02050 FliJ: Flagellar FliJ 39.3 2.2E+02 0.0048 23.6 16.1 80 86-165 3-87 (123)
85 PRK15136 multidrug efflux syst 37.6 5.3E+02 0.011 27.4 14.6 31 77-109 156-186 (390)
86 COG2433 Uncharacterized conser 37.1 5.3E+02 0.011 29.7 12.7 46 178-226 417-462 (652)
87 KOG0963 Transcription factor/C 36.2 7.3E+02 0.016 28.6 33.5 126 98-226 213-343 (629)
88 PF07798 DUF1640: Protein of u 36.1 3.8E+02 0.0082 25.3 15.7 33 192-224 36-68 (177)
89 KOG1853 LIS1-interacting prote 36.1 5.1E+02 0.011 26.8 19.3 28 193-220 140-167 (333)
90 PRK09039 hypothetical protein; 35.9 5.5E+02 0.012 27.1 20.0 18 351-368 231-248 (343)
91 PRK10476 multidrug resistance 35.4 5.1E+02 0.011 26.6 17.2 30 78-109 151-180 (346)
92 KOG0972 Huntingtin interacting 35.0 5.7E+02 0.012 27.0 13.6 86 200-286 234-326 (384)
93 COG1340 Uncharacterized archae 33.9 5.7E+02 0.012 26.7 32.2 47 105-151 30-76 (294)
94 PF05911 DUF869: Plant protein 33.8 8.7E+02 0.019 28.8 27.9 88 99-224 21-109 (769)
95 PF15290 Syntaphilin: Golgi-lo 33.8 2.5E+02 0.0054 29.2 8.9 27 183-212 117-143 (305)
96 KOG1962 B-cell receptor-associ 33.7 3E+02 0.0065 27.5 9.2 80 186-284 130-209 (216)
97 KOG0979 Structural maintenance 33.2 9.9E+02 0.021 29.3 26.8 87 138-226 210-302 (1072)
98 PF06818 Fez1: Fez1; InterPro 32.2 5.1E+02 0.011 25.7 18.9 161 8-187 10-174 (202)
99 PF06160 EzrA: Septation ring 31.9 7.8E+02 0.017 27.7 31.7 284 9-312 188-488 (560)
100 KOG0250 DNA repair protein RAD 31.5 1.1E+03 0.023 29.1 38.4 196 94-300 254-454 (1074)
101 PHA03011 hypothetical protein; 30.1 4E+02 0.0086 23.8 8.3 58 96-153 58-115 (120)
102 PF08606 Prp19: Prp19/Pso4-lik 30.0 3.2E+02 0.007 22.7 8.3 41 86-126 13-53 (70)
103 PRK04863 mukB cell division pr 28.9 1.3E+03 0.029 29.4 40.8 37 128-164 440-476 (1486)
104 PF10212 TTKRSYEDQ: Predicted 28.7 8E+02 0.017 27.7 12.3 85 35-153 419-503 (518)
105 PF08317 Spc7: Spc7 kinetochor 28.4 6.9E+02 0.015 25.9 19.7 46 205-251 242-287 (325)
106 PF13851 GAS: Growth-arrest sp 28.1 5.7E+02 0.012 24.9 19.4 144 130-287 20-169 (201)
107 PF08614 ATG16: Autophagy prot 27.6 5.5E+02 0.012 24.5 10.6 104 3-116 76-179 (194)
108 KOG0018 Structural maintenance 27.3 1.3E+03 0.027 28.6 35.5 283 2-335 653-988 (1141)
109 PF13514 AAA_27: AAA domain 27.0 1.2E+03 0.026 28.4 35.5 31 86-116 685-715 (1111)
110 PRK13729 conjugal transfer pil 25.7 2.1E+02 0.0046 31.8 7.3 46 180-225 73-122 (475)
111 TIGR02680 conserved hypothetic 25.5 1.4E+03 0.031 28.7 32.8 43 263-305 923-965 (1353)
112 TIGR00998 8a0101 efflux pump m 25.3 7.2E+02 0.016 25.1 17.2 74 31-106 96-171 (334)
113 KOG4673 Transcription factor T 25.0 1.2E+03 0.026 27.6 32.2 252 2-294 347-624 (961)
114 TIGR02680 conserved hypothetic 23.9 1.5E+03 0.033 28.4 32.8 65 89-153 855-919 (1353)
115 PF05590 DUF769: Xylella fasti 23.0 39 0.00085 34.4 1.0 30 450-479 83-113 (260)
116 COG4937 Predicted regulatory d 22.9 24 0.00051 33.2 -0.5 31 428-458 67-98 (171)
117 KOG0612 Rho-associated, coiled 22.6 1.6E+03 0.035 28.2 36.8 39 6-44 492-530 (1317)
118 PF10212 TTKRSYEDQ: Predicted 22.5 1.2E+03 0.025 26.5 12.7 85 136-225 419-505 (518)
119 KOG4360 Uncharacterized coiled 21.7 1.2E+03 0.025 26.6 11.8 87 101-198 218-304 (596)
120 PF14197 Cep57_CLD_2: Centroso 21.4 4.6E+02 0.0099 21.4 9.8 53 95-154 12-64 (69)
121 COG4245 TerY Uncharacterized p 21.3 30 0.00064 34.0 -0.2 27 456-482 44-70 (207)
122 smart00787 Spc7 Spc7 kinetocho 21.3 9.5E+02 0.021 25.1 20.1 49 262-310 205-253 (312)
123 PRK12472 hypothetical protein; 21.0 1.2E+03 0.026 26.2 13.8 37 6-42 216-252 (508)
124 PF05529 Bap31: B-cell recepto 20.8 5E+02 0.011 24.6 8.1 44 4-47 128-172 (192)
125 PF15556 Zwint: ZW10 interacto 20.4 8.8E+02 0.019 24.3 15.2 97 11-111 73-171 (252)
126 PRK10884 SH3 domain-containing 20.3 8.3E+02 0.018 24.0 12.1 27 86-112 91-117 (206)
No 1
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=100.00 E-value=1.3e-67 Score=567.90 Aligned_cols=406 Identities=30% Similarity=0.362 Sum_probs=366.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH----HH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE----MA 77 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~----~~ 77 (482)
+|+.+|+||++||+|+.++|.+|++|++||++|||+|++|+++|+.++.++.+|++|++++++|+++|++|+++ .|
T Consensus 35 eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~ 114 (522)
T PF05701_consen 35 ELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAW 114 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999985 58
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 78 DQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 78 k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
+++|++ +|+||+.++++|++||+||.++|++|++++++|+.|+++|++|+++++.|.++|++|+.||+++|++|++++
T Consensus 115 k~ele~--~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~~~ 192 (522)
T PF05701_consen 115 KAELES--AREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLESAK 192 (522)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhccc----
Q 042777 158 LVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSS---- 233 (482)
Q Consensus 158 ~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s---- 233 (482)
++|++|++++++|++++++++..|+..|+++++++..|+++++.+++|+++|..++.+|..|+.+|+.+++.....
T Consensus 193 ~a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~ 272 (522)
T PF05701_consen 193 LAHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEA 272 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999886632222
Q ss_pred ----------chhHHHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHH---------------------
Q 042777 234 ----------DKSDVIKELKQVKEEME-VKERRNLVQAFRIESMETELHQLKLEVKNAN--------------------- 281 (482)
Q Consensus 234 ----------~k~~~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar--------------------- 281 (482)
+. .++.||++++.+|+ ++++.++++. +|+||+.||.+++.++..++
T Consensus 273 ~~~~~~~~~~l~-s~~~ELe~ak~~L~~~k~E~~~L~~-~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r 350 (522)
T PF05701_consen 273 KEKSSELQSSLA-SAKKELEEAKKELEKAKEEASSLRA-SVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTR 350 (522)
T ss_pred hhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHH
Confidence 22 37889999999998 9999999999 79999999999988843322
Q ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
Q 042777 282 --------------EEMDSLKSNAEMLTDLLQRAKTEMDEVRKK-----------------------ENVAKAEIVESAL 324 (482)
Q Consensus 282 --------------~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~-----------------------~a~~e~E~aka~~ 324 (482)
..+..|+..++++..|++.||..+..++.+ .+..+++++|+++
T Consensus 351 ~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasE 430 (522)
T PF05701_consen 351 SELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASE 430 (522)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 245557777888888888888777766653 4555555556666
Q ss_pred HchhHHHHHHHHHHHHh---HhhhhccCCCceeecHHHHHHHHhHHHHHHHhHHHhhhhhcccc--cchhhhhhHHHHHH
Q 042777 325 INTRVEFQQVDELENVT---EEIREDQNGAFVVISAEEYDLLVKKAVKADEVSMALVECYPIQP--ESKDELETSKKKLE 399 (482)
Q Consensus 325 ~~l~~Al~~ik~l~e~s---~~s~~~~~~~~ITiS~eEYe~Ls~ka~eaEe~a~~kVaaA~~qv--ak~sE~e~l~~kLE 399 (482)
.. |+++|++|++.. +.+.+. +|++||||+|||++|++||++++++|++||++||++| +|+|++++| +||+
T Consensus 431 a~---Ala~ik~l~e~~~~~~~~~~~-~~~~Vtls~eEy~~L~~ka~e~ee~a~kkva~A~aqve~ak~se~e~l-~kle 505 (522)
T PF05701_consen 431 AL---ALAEIKALSESESSSRASDSE-SSSKVTLSLEEYESLSKKAEEAEELAEKKVAAAMAQVEAAKASEKEIL-EKLE 505 (522)
T ss_pred HH---HHHHHHHhhcccccccccccC-CCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 55 999999998752 122223 7899999999999999999999999999999999777 999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 042777 400 GATAKIRELRNRVEQAM 416 (482)
Q Consensus 400 ~~~keiee~k~ale~Al 416 (482)
++.++|+++|.+|+.||
T Consensus 506 ~~~~e~~~~k~al~~Al 522 (522)
T PF05701_consen 506 EAMKEIEERKEALEEAL 522 (522)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999985
No 2
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.97 E-value=7.1e-05 Score=82.00 Aligned_cols=282 Identities=25% Similarity=0.298 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH------HHHHHHHHHHHH------------
Q 042777 26 QALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE------MADQLAETARLR------------ 87 (482)
Q Consensus 26 qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~------~~k~~Le~~~ar------------ 87 (482)
..-.+|..+++=+..++.+|..+...+.++..+.+-++.-+.+|-..+-. .+....+..+-|
T Consensus 31 ~~e~eL~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~ 110 (522)
T PF05701_consen 31 EKETELEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEA 110 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccc
Confidence 35568999999999999999999999999999999999999988766632 112222221111
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHH
Q 042777 88 -----EQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIE 162 (482)
Q Consensus 88 -----eqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~e 162 (482)
.++..+-.-...+-.+|..+++++..+..+=+.++..-..|..-+.......+.-...+..|.-.|..++-.+.-
T Consensus 111 ~~~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~~ 190 (522)
T PF05701_consen 111 SVAWKAELESAREQYASAVAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLES 190 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222233333334455555555555555555555555555555555555555555555555555444433333
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchh-----
Q 042777 163 AHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLK-RQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKS----- 236 (482)
Q Consensus 163 Aeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk-~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~----- 236 (482)
++- .-.+++++...+- ..-.....++..|..+...+..|+.++...+++.+.....
T Consensus 191 ~~~------------------a~~eAeee~~~~~~~~~~~~~~~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~ 252 (522)
T PF05701_consen 191 AKL------------------AHIEAEEERIEIAAEREQDAEEWEKELEEAEEELEELKEELEAAKDLESKLAEASAELE 252 (522)
T ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1111222211111 1113344667777788888888888886665554321111
Q ss_pred HHHHHHHHHHH-HHHH----HHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 237 DVIKELKQVKE-EMEV----KERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK 311 (482)
Q Consensus 237 ~~~~EL~e~k~-~le~----k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~ 311 (482)
++..||...+. .+.. ......+.. ++.++..||+.++..|..+..++..+...+..|..|++..|..+..++.+
T Consensus 253 ~Lq~El~~~~~~~l~~~~~~~~~~~~~~~-~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 253 SLQAELEAAKESKLEEEAEAKEKSSELQS-SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24445555554 2221 122233344 69999999999999999999999999999999999999999999988877
Q ss_pred HHHHHHHHH--HHHHHc
Q 042777 312 ENVAKAEIV--ESALIN 326 (482)
Q Consensus 312 ~a~~e~E~a--ka~~~~ 326 (482)
.......+. ...+.+
T Consensus 332 e~~a~~~v~~L~~eL~~ 348 (522)
T PF05701_consen 332 EKEASSEVSSLEAELNK 348 (522)
T ss_pred HHHHHhHHhhHHHHHHH
Confidence 444444443 344444
No 3
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.45 E-value=0.42 Score=55.99 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=6.5
Q ss_pred HHHHHHHHhHHHH
Q 042777 357 AEEYDLLVKKAVK 369 (482)
Q Consensus 357 ~eEYe~Ls~ka~e 369 (482)
.+.|.+|..+..+
T Consensus 992 ~er~~~l~~q~~d 1004 (1179)
T TIGR02168 992 IEEYEELKERYDF 1004 (1179)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555554444
No 4
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.41 E-value=0.56 Score=56.47 Aligned_cols=195 Identities=24% Similarity=0.239 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 042777 10 LANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQ 89 (482)
Q Consensus 10 l~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areq 89 (482)
+.+|+.+.+.++..=.++..-|++-..++.+|..+|+........|..-..+- .. ...++..-.-.+
T Consensus 167 v~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~--------~e-----~~~~~~~~~~~~ 233 (1163)
T COG1196 167 VSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELK--------AE-----LRELELALLLAK 233 (1163)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-----HHHHHHHHHHHH
Confidence 35788888888777777777788888888888888887766555554322211 11 111222114455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhh
Q 042777 90 LLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCK 169 (482)
Q Consensus 90 ya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~ 169 (482)
|-.....|..+..++..++.++.........+.......... +.++..++..+...+........+-+.+...
T Consensus 234 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~ 306 (1163)
T COG1196 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSE-------LEELREELEELQEELLELKEEIEELEGEISL 306 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666777777777777777766666655555544444433 3333333333333322222211111111111
Q ss_pred hh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042777 170 IL---SEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 170 i~---~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
+. .....+...+...+.+...++...+..++....+...+...-..+.....++.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~ 364 (1163)
T COG1196 307 LRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111223344455555666666666665544444444444444444444444
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.32 E-value=0.6 Score=54.76 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=4.3
Q ss_pred cHHHHHHHH
Q 042777 356 SAEEYDLLV 364 (482)
Q Consensus 356 S~eEYe~Ls 364 (482)
..+||..+.
T Consensus 980 aiee~~~~~ 988 (1179)
T TIGR02168 980 KIKELGPVN 988 (1179)
T ss_pred HHHHcCCCC
Confidence 445555443
No 6
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.97 E-value=1.5 Score=52.96 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHH
Q 042777 9 DLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVE 57 (482)
Q Consensus 9 El~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~q 57 (482)
++..+..++.........+..++..++..+..+...+............
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666655555555555555443333333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.95 E-value=1.3 Score=52.11 Aligned_cols=42 Identities=19% Similarity=0.171 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042777 11 ANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDER 52 (482)
Q Consensus 11 ~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~ 52 (482)
..|..++..+..-=.++...+...+..+.+|..+++.+....
T Consensus 166 ~~~~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~ 207 (1164)
T TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRRER 207 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555544444445555555555555555555554333
No 8
>PRK02224 chromosome segregation protein; Provisional
Probab=96.91 E-value=1.3 Score=51.39 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042777 179 EVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLR 220 (482)
Q Consensus 179 ~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq 220 (482)
..|...+..++.++..++.++. .+++.+......|..++
T Consensus 408 ~~~e~~l~~l~~~~~~l~~~~~---~~~~~~~~~~~~l~~~~ 446 (880)
T PRK02224 408 GNAEDFLEELREERDELREREA---ELEATLRTARERVEEAE 446 (880)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4455555555555555554432 23333344444444444
No 9
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.88 E-value=1.5 Score=51.69 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHH
Q 042777 21 DSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTE 61 (482)
Q Consensus 21 E~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ 61 (482)
..-...+...|..+...+.+|...+.........+....+.
T Consensus 169 ~~~~~~~~~~l~~~~~~l~el~~~~~~L~~q~~~l~~~~e~ 209 (1164)
T TIGR02169 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK 209 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666677777777777777776666555555554443
No 10
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.69 E-value=1.5 Score=48.83 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=12.2
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHH
Q 042777 128 MESAAGMEKDKSDMLSRHVSELNE 151 (482)
Q Consensus 128 a~~~a~~~~~kveeLs~Ei~~lkE 151 (482)
+..........+.-|..|+..+..
T Consensus 295 ~qe~lqaSqq~~~~L~~EL~~~~~ 318 (546)
T PF07888_consen 295 AQEQLQASQQEAELLRKELSDAVN 318 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555666666555444
No 11
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.65 E-value=0.81 Score=45.35 Aligned_cols=158 Identities=17% Similarity=0.149 Sum_probs=94.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLA 81 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~L 81 (482)
+||.+...+..+...+..++....++..++....+-+.-|...|+.+...-..+.+..+.+..++.+.+.+.. .|
T Consensus 9 eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k-----~l 83 (237)
T PF00261_consen 9 ELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARK-----VL 83 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHH-----HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 4677777778888888888888888888888888888888888888877666666667777666666655532 12
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHH
Q 042777 82 ETAR--LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELV 159 (482)
Q Consensus 82 e~~~--areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A 159 (482)
+.-. .-++....=..|..++.-+...-.-|+-+..-=......-+.+...+.....++.+|-.+|..+...+-+....
T Consensus 84 E~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~ 163 (237)
T PF00261_consen 84 ENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEAS 163 (237)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhh
Confidence 2100 01111111222333333333333333333333333444445555556666667777777777777766666555
Q ss_pred HHHHh
Q 042777 160 AIEAH 164 (482)
Q Consensus 160 ~~eAe 164 (482)
...+.
T Consensus 164 ~~~~~ 168 (237)
T PF00261_consen 164 EEKAS 168 (237)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 44443
No 12
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.37 E-value=3.9 Score=50.03 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhh------HHHHHHHHhhHHHHhH
Q 042777 7 LKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKY------VEECTEARTCIDVLES 71 (482)
Q Consensus 7 qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A------~qd~E~ak~r~~elE~ 71 (482)
.+++|.++.++...+..-..+..+|+.....+..+...++.+..-.... ..+....+.++..++.
T Consensus 743 ~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~ 813 (1311)
T TIGR00606 743 EKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAA 813 (1311)
T ss_pred HhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888887777777777777777777777777776664322222 4555555666665544
No 13
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.31 E-value=1.5 Score=44.56 Aligned_cols=253 Identities=20% Similarity=0.214 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHH
Q 042777 6 LLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETAR 85 (482)
Q Consensus 6 ~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~ 85 (482)
...+|..++.++..+-..|+++..++++++..+++++.+++...........+....+..+.. .. .++..|+
T Consensus 52 ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~---~~--~~r~~le--- 123 (312)
T PF00038_consen 52 YEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDE---ET--LARVDLE--- 123 (312)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH--HHHHHHH---
T ss_pred hhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---hh--hhHhHHH---
Confidence 456777777777777788888888888888888888887776644444433333333211111 00 1122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhh
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHG 165 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAee 165 (482)
..+.+.++||.-++..|..=+..=. .++. .........-.-.+|+.-|..++...
T Consensus 124 ---------~~i~~L~eEl~fl~~~heeEi~~L~---~~~~-~~~~~e~~~~~~~dL~~~L~eiR~~y------------ 178 (312)
T PF00038_consen 124 ---------NQIQSLKEELEFLKQNHEEEIEELR---EQIQ-SSVTVEVDQFRSSDLSAALREIRAQY------------ 178 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHTTS---TT-----------------HHHHHHHHHHHH------------
T ss_pred ---------HHHHHHHHHHHHHHhhhhhhhhhhh---hccc-cccceeecccccccchhhhhhHHHHH------------
Confidence 2455555555555554433111100 0110 00000111111122333333333211
Q ss_pred hhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHH
Q 042777 166 EKCKILSEIDAEL-EVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQ 244 (482)
Q Consensus 166 e~~~i~~e~~~~~-~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e 244 (482)
..++...-.+. ..|...+.........-. .....+...+......|..|+.+|...+... .....-|.+
T Consensus 179 --e~~~~~~~~e~e~~y~~k~~~l~~~~~~~~---~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~-----~~Le~~l~~ 248 (312)
T PF00038_consen 179 --EEIAQKNREELEEWYQSKLEELRQQSEKSS---EELESAKEELKELRRQIQSLQAELESLRAKN-----ASLERQLRE 248 (312)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
T ss_pred --HHHHhhhhhhhhhhcccccccccccccccc---cccchhHhHHHHHHhhhhHhhhhhhccccch-----hhhhhhHHH
Confidence 11111222222 233333333333322222 2333444555566666666666666432210 001222333
Q ss_pred HHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 245 VKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTE 304 (482)
Q Consensus 245 ~k~~le~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~ 304 (482)
+...+ ..+...+.. .|.+++.||..++.++..-..+.+.|-..=..|..|+..=+..
T Consensus 249 le~~~--~~~~~~~~~-~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 249 LEQRL--DEEREEYQA-EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHH-hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22222 222233455 5788888888888887766666666555555555666554443
No 14
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.70 E-value=2.5 Score=41.92 Aligned_cols=46 Identities=24% Similarity=0.244 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHH
Q 042777 27 ALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESK 72 (482)
Q Consensus 27 al~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~ 72 (482)
+-.+|+.+..-+..+..+|+.+......+.........|+..||..
T Consensus 6 l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~ 51 (237)
T PF00261_consen 6 LKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEE 51 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355666666666666666666666666666666666666665554
No 15
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.53 E-value=10 Score=47.73 Aligned_cols=226 Identities=20% Similarity=0.230 Sum_probs=126.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHH-H
Q 042777 3 VEGLLKDLANCKLQLEAKDSA----QKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEM-A 77 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~----K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~-~ 77 (482)
++.+..+|.++|..+..-..- -..--..|..|+..|+++...+....+.-..+..+..-...++.+|+.++... .
T Consensus 807 i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~ 886 (1822)
T KOG4674|consen 807 IKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKT 886 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 455666666666665544333 34445677889999999999999999888888888888888888888887631 1
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHh
Q 042777 78 -DQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKA 156 (482)
Q Consensus 78 -k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~ 156 (482)
..-++.++....-..-...|.....++..++..|.++.. ++..=......++..++.+..++...+..++
T Consensus 887 ~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s-------~i~~yqe~~~s~eqsl~~~ks~lde~~~~~e-- 957 (1822)
T KOG4674|consen 887 QLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALS-------QIREYQEEYSSLEQSLESVKSELDETRLELE-- 957 (1822)
T ss_pred HHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--
Confidence 222332111222222223344455555555666655443 3333333334444444444444444332111
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccch
Q 042777 157 ELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL-EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDK 235 (482)
Q Consensus 157 ~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~-e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k 235 (482)
+.|+-.. ...-+....+-.++.++..|+.+. -.+++.+.++...+..|..|+.++..+....+...+
T Consensus 958 --a~ie~~~----------~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~ 1025 (1822)
T KOG4674|consen 958 --AKIESLH----------KKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANE 1025 (1822)
T ss_pred --HHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 0111110 011122223445566666666665 567889999999999999999999976443322222
Q ss_pred --hHHHHHHHHHHHHH
Q 042777 236 --SDVIKELKQVKEEM 249 (482)
Q Consensus 236 --~~~~~EL~e~k~~l 249 (482)
++++.+|......+
T Consensus 1026 ~~~~~k~dl~~~~~~~ 1041 (1822)
T KOG4674|consen 1026 QIEDLQNDLKTETEQL 1041 (1822)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 13444555554444
No 16
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=95.46 E-value=5.6 Score=44.40 Aligned_cols=270 Identities=18% Similarity=0.203 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHH
Q 042777 8 KDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLR 87 (482)
Q Consensus 8 kEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~ar 87 (482)
-||+.++.=+..+...++++..++.+.+--+++|+.+++.+......+..+......++-.++.. +.. .+
T Consensus 92 ~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe--------~~~--~k 161 (546)
T KOG0977|consen 92 AELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAE--------INT--LK 161 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhH--------HHH--HH
Confidence 47788888888888999999999999999999999999999988888888888777777776443 444 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 042777 88 EQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEK 167 (482)
Q Consensus 88 eqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~ 167 (482)
-++...-.++.-+|.|..+|+.++..+....+. ....=.....++..|..+|.-++..+.. +-.+.+
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~-------Etllr~d~~n~~q~Lleel~f~~~~h~~------eI~e~~ 228 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDD-------ETLLRVDLQNRVQTLLEELAFLKRIHKQ------EIEEER 228 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHhccHH------HHHHHH
Confidence 567777778888888888888888777665543 3333345556677777777776642211 111112
Q ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhH-----------HHHHHHHHHHHHhHhhh
Q 042777 168 CKILSEI-DAELEVAKAKAAKAEEQFEDLKRQLE-----MIQELEIELLEKS-----------IVSDLLRLELEQSIEML 230 (482)
Q Consensus 168 ~~i~~e~-~~~~~~~~~~l~qae~el~~Lk~e~e-----~~k~LE~KL~ets-----------~~i~~Lq~EL~~~ke~~ 230 (482)
..+.... ...+..|+.+|..+=.+ ++.+++ --+++|....-.- ..+...+.|+...+...
T Consensus 229 ~~~~rd~t~~~r~~F~~eL~~Ai~e---iRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i 305 (546)
T KOG0977|consen 229 RKARRDTTADNREYFKNELALAIRE---IRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRI 305 (546)
T ss_pred HHHhhcccccchHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcc
Confidence 2221111 24567888877766444 333431 2234444333322 23333455555332211
Q ss_pred cc-cchh--------HHHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 231 SS-SDKS--------DVIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRA 301 (482)
Q Consensus 231 ~~-s~k~--------~~~~EL~e~k~~le~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~A 301 (482)
+. ..+. ...+.+++++-.| .++-.+|.. +.+....+|.++..+....-.+++.|.-.-..|..|+..=
T Consensus 306 ~~Lr~klselE~~n~~L~~~I~dL~~ql--~e~~r~~e~-~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~Y 382 (546)
T KOG0977|consen 306 SGLRAKLSELESRNSALEKRIEDLEYQL--DEDQRSFEQ-ALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAY 382 (546)
T ss_pred cchhhhhccccccChhHHHHHHHHHhhh--hhhhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHH
Confidence 10 0110 1223333333222 223344454 4666666666666665555555555555555666666665
Q ss_pred HHHHH
Q 042777 302 KTEMD 306 (482)
Q Consensus 302 k~~~~ 306 (482)
+..+.
T Consensus 383 RkLLe 387 (546)
T KOG0977|consen 383 RKLLE 387 (546)
T ss_pred HHHhc
Confidence 55555
No 17
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.43 E-value=8.4 Score=46.27 Aligned_cols=49 Identities=24% Similarity=0.380 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK 311 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~ 311 (482)
+.|+..|+.....++...+.++..+++.+..+.++++.++......+.+
T Consensus 551 l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~ 599 (1293)
T KOG0996|consen 551 LPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSR 599 (1293)
T ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 5555555555666666677777778888889999999999877766654
No 18
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.37 E-value=9.4 Score=46.45 Aligned_cols=56 Identities=18% Similarity=0.366 Sum_probs=42.7
Q ss_pred HHHhhHHHHHHHHHhHhhhhhHHHhhhccCCCCCCCCcccc--cCCCcccccchhhcc
Q 042777 424 RAKAGLEDQIRRYKERKQKKSAAIVAHKEVSEPKPMNFPTY--EKIPATYQPLGKVLN 479 (482)
Q Consensus 424 ~~K~avE~ELRkWR~e~q~rka~e~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 479 (482)
...-..+.+|+.-+.+-++.++....++..-.|.+-|..+| .+.|..-+-+|||++
T Consensus 504 ~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~gSL~~fL~~~~p~We~tIGKVid 561 (1201)
T PF12128_consen 504 KERDQAEEELRQARRELEELRAQIAELQRQLDPQKGSLLEFLRKNKPGWEQTIGKVID 561 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHhCCCcHHHHhHhhCC
Confidence 33444456777777775555666667788888889999999 779999999999987
No 19
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.03 E-value=12 Score=45.66 Aligned_cols=111 Identities=23% Similarity=0.285 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHH
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAET 83 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~ 83 (482)
+.++..+..+..++..+......+...|....+.++.+...+..+...-.++..+..-.+.....++..+..........
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999988888888999999999999999999988888888888777777766666655543322211221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 84 ARLREQLLHVLNELKAAQEELLSMETELAAARG 116 (482)
Q Consensus 84 ~~areqya~~~~EL~svKqEL~klr~E~~s~~e 116 (482)
+..+...+..++...++++.....++..-..
T Consensus 683 --~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~ 713 (1201)
T PF12128_consen 683 --IEEQLNELEEELKQLKQELEELLEELKEQLK 713 (1201)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555544333
No 20
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=94.19 E-value=16 Score=43.61 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=149.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHH
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAE 82 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le 82 (482)
|+.+...+..+-.-+..+-.-=.+...+|..-++-+.++..+|. .+.+.+....+...|.... .|..
T Consensus 209 L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~--------~~~~~e~~~~~l~~Lk~k~--~W~~--- 275 (1074)
T KOG0250|consen 209 LEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLD--------NLEQLEDLKENLEQLKAKM--AWAW--- 275 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH--HHHH---
Confidence 34444444444444443333333333444444444444444443 2334445544444442221 2432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHH
Q 042777 83 TARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIE 162 (482)
Q Consensus 83 ~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~e 162 (482)
-..+..+|.....+..+.+...+.+-+.=........++.........++..+..++.+..+.+..++..-..
T Consensus 276 -------V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~ 348 (1074)
T KOG0250|consen 276 -------VNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDD 348 (1074)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 2344456777777777777777777766677778888888888999999999999999999988888765544
Q ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhH
Q 042777 163 AHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL-----EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSD 237 (482)
Q Consensus 163 Aeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~-----e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~ 237 (482)
...+...+-.+ .......+.+..+.+..+++.+ ...+++.+++.+....+..|+.+.+.+.+.. ..
T Consensus 349 ~~re~~~~~~~----~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~-----~~ 419 (1074)
T KOG0250|consen 349 LRREVNDLKEE----IREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI-----NS 419 (1074)
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 44333222222 1222223333344444444433 2257788888888888888888887654421 12
Q ss_pred HHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 042777 238 VIKELKQVKEEME-VKERRNLVQAFRIESMETELHQLKLEVKNANE----EMDSLKSNAEMLTDLLQRAKTE 304 (482)
Q Consensus 238 ~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~----~~~~l~~~l~~l~~E~e~Ak~~ 304 (482)
+..|+++++..+. ..++-..... -+.+|+.-+...+.+|+..+. .+..--..+-+|-.+++..+..
T Consensus 420 L~~e~~~~~~~~~~~~ee~~~i~~-~i~~l~k~i~~~~~~l~~lk~~k~dkvs~FG~~m~~lL~~I~r~~~~ 490 (1074)
T KOG0250|consen 420 LREELNEVKEKAKEEEEEKEHIEG-EILQLRKKIENISEELKDLKKTKTDKVSAFGPNMPQLLRAIERRKRR 490 (1074)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHhc
Confidence 5567777777775 3333233333 244455555555544443332 1111114555666666666655
No 21
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.08 E-value=10 Score=40.76 Aligned_cols=159 Identities=15% Similarity=0.190 Sum_probs=95.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLA 81 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~L 81 (482)
+||.++.+|--.+.++..++.+|-.+..|=+.++- .|..+. ++-+.+. +++
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~-------El~~~r-------~e~~~v~---------------~~~ 125 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARS-------ELQKAR-------QEREAVR---------------QEL 125 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH-------HHHHHHH---------------HHH
Confidence 57888888888888888888888777776555432 222232 2233332 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHH
Q 042777 82 ETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAI 161 (482)
Q Consensus 82 e~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~ 161 (482)
.- ++..|+.+..+|..+...-..++..+..+.+.+-....++.......+.---.+..|..++-.|+-. .+.|
T Consensus 126 ~~--a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r-----~~~i 198 (499)
T COG4372 126 AA--ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLR-----SAQI 198 (499)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 22 6667888888888888888888888888888888877777765555555444566676666666532 1222
Q ss_pred HHhh----hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 042777 162 EAHG----EKCKILSEIDAELEVAKAKAAKAEEQFEDLK 196 (482)
Q Consensus 162 eAee----e~~~i~~e~~~~~~~~~~~l~qae~el~~Lk 196 (482)
+-+. -+.+....++.+..+-...+.+...++..+.
T Consensus 199 eQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd 237 (499)
T COG4372 199 EQEAQNLATRANAAQARTEELARRAAAAQQTAQAIQQRD 237 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 1223444455555555545554444444433
No 22
>PRK11637 AmiB activator; Provisional
Probab=94.04 E-value=10 Score=40.68 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHH
Q 042777 6 LLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESK 72 (482)
Q Consensus 6 ~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~ 72 (482)
+++++...+.++.........+-.++..+..-+..|..+|...+..-....++....+..+..++..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~e 111 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNAS 111 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444444444444444444444444444444433333333344444444443333
No 23
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.93 E-value=17 Score=42.85 Aligned_cols=254 Identities=18% Similarity=0.203 Sum_probs=133.3
Q ss_pred HHHHHHHHHHhHHHHHh---hhHHHHHHHHhhHHHHhHHHHH-H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 37 IADELSTLLKQSEDERG---KYVEECTEARTCIDVLESKLKE-M-----ADQLAETARLREQLLHVLNELKAAQEELLSM 107 (482)
Q Consensus 37 ~veEL~~kLe~a~~~~~---~A~qd~E~ak~r~~elE~~~~~-~-----~k~~Le~~~areqya~~~~EL~svKqEL~kl 107 (482)
-+.+|+.+|+.....+. --....+-+++...+++.-.+- + .+++|-- +|..-..+..-=+--++||.-+
T Consensus 232 QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~r--aR~e~keaqe~ke~~k~emad~ 309 (1243)
T KOG0971|consen 232 QVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKR--ARKEAKEAQEAKERYKEEMADT 309 (1243)
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 37777777776653221 1223344444544444332221 1 1111111 3332233333333445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHH----------hHHHHHHHhhhhhh--------
Q 042777 108 ETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFK----------AELVAIEAHGEKCK-------- 169 (482)
Q Consensus 108 r~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~----------~~~A~~eAeee~~~-------- 169 (482)
..-+.++.-.|.-|..+|+.-..-...-.+++++|+.++.=||++..- ...=.++-+..|..
T Consensus 310 ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 310 ADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666666777888888888888888889999999998888886642 11112222222221
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---Hhhh-cccch---h-HHHHH
Q 042777 170 ILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQS---IEML-SSSDK---S-DVIKE 241 (482)
Q Consensus 170 i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~---ke~~-~~s~k---~-~~~~E 241 (482)
..+...++.+...++|+--..++..|++ ....|..+++...+-|..||.+...+ .+|- +-..+ . +--+.
T Consensus 390 lsA~ek~d~qK~~kelE~k~sE~~eL~r---~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVkl 466 (1243)
T KOG0971|consen 390 LSASEKQDHQKLQKELEKKNSELEELRR---QKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKL 466 (1243)
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHH
Confidence 2233333444443444444444443333 34567778888888899999988843 3321 11111 1 33345
Q ss_pred HHHHHHHHHHHHHh-----hhhhhhcHHHHHHHHHHHH---HH------------------HHHHHHHHHHHHHHHHHHH
Q 042777 242 LKQVKEEMEVKERR-----NLVQAFRIESMETELHQLK---LE------------------VKNANEEMDSLKSNAEMLT 295 (482)
Q Consensus 242 L~e~k~~le~k~e~-----~~~~~~sv~sL~~EL~~~~---~E------------------le~ar~~~~~l~~~l~~l~ 295 (482)
|++.-.+|++.++- .+-+- ..-+|+.||+.++ .| +..+|.-+..|+..++.++
T Consensus 467 Leetv~dlEalee~~EQL~Esn~e-le~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~ 545 (1243)
T KOG0971|consen 467 LEETVGDLEALEEMNEQLQESNRE-LELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELT 545 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555422221 11111 2457777777763 22 3556666677776666665
Q ss_pred H
Q 042777 296 D 296 (482)
Q Consensus 296 ~ 296 (482)
.
T Consensus 546 d 546 (1243)
T KOG0971|consen 546 D 546 (1243)
T ss_pred h
Confidence 4
No 24
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.86 E-value=13 Score=41.46 Aligned_cols=246 Identities=23% Similarity=0.271 Sum_probs=132.7
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042777 134 MEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKS 213 (482)
Q Consensus 134 ~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets 213 (482)
+....|+.|..+|.++-+.+..+.-+.|+|-+==..++.+ ..+|+-++++..
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLee----------------------------K~~Lkqq~eEle 56 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEE----------------------------KEDLKQQLEELE 56 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 3456789999999999999999998888886422223222 234444555555
Q ss_pred HHHHHHHHHHHHhHhhh----cccchhHHHHHHHHHHHHHH--HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 214 IVSDLLRLELEQSIEML----SSSDKSDVIKELKQVKEEME--VKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSL 287 (482)
Q Consensus 214 ~~i~~Lq~EL~~~ke~~----~~s~k~~~~~EL~e~k~~le--~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l 287 (482)
++.+.++.||...++.. +..-++ +...++.--.=|+ +..+..-+.- |..|++||++...++.+.+.+.+.|
T Consensus 57 aeyd~~R~Eldqtkeal~q~~s~hkk~-~~~g~e~EesLLqESaakE~~yl~k--I~eleneLKq~r~el~~~q~E~erl 133 (772)
T KOG0999|consen 57 AEYDLARTELDQTKEALGQYRSQHKKV-ARDGEEREESLLQESAAKEEYYLQK--ILELENELKQLRQELTNVQEENERL 133 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhhHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555666665544421 111111 2222322222333 2223233332 7799999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHhHhhhh-ccCCCceeecHHHHHHHHhH
Q 042777 288 KSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVDELENVTEEIRE-DQNGAFVVISAEEYDLLVKK 366 (482)
Q Consensus 288 ~~~l~~l~~E~e~Ak~~~~~a~~~~a~~e~E~aka~~~~l~~Al~~ik~l~e~s~~s~~-~~~~~~ITiS~eEYe~Ls~k 366 (482)
-...+.+..--... +.. ...-..++-.-|--+.+ -|..+-.|.+- .++ +..-++..=|--||+.|..-
T Consensus 134 ~~~~sd~~e~~~~~--E~q---R~rlr~elKe~KfRE~R---llseYSELEEE---NIsLQKqVs~LR~sQVEyEglkhe 202 (772)
T KOG0999|consen 134 EKVHSDLKESNAAV--EDQ---RRRLRDELKEYKFREAR---LLSEYSELEEE---NISLQKQVSNLRQSQVEYEGLKHE 202 (772)
T ss_pred HHHHHHhhhcchhh--HHH---HHHHHHHHHHHHHHHHH---HHHHHHHHHHh---cchHHHHHHHHhhhhhhhhHHHHH
Confidence 77776665422111 111 01111112222222333 33333333321 111 00012233345588888654
Q ss_pred HHHHHHhHHHhhhhhcccccchhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHh
Q 042777 367 AVKADEVSMALVECYPIQPESKDELETSKKKLEGAT--AKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYKERK 440 (482)
Q Consensus 367 a~eaEe~a~~kVaaA~~qvak~sE~e~l~~kLE~~~--keiee~k~ale~Al~rAE~A~~~K~avE~ELRkWR~e~ 440 (482)
..--++ |.+.|+..++++. ++|.+ .-++.||.-+..-...|.++=.||-.+|.-+
T Consensus 203 ikRleE-----------------e~elln~q~ee~~~Lk~IAe--kQlEEALeTlq~EReqk~alkkEL~q~~n~e 259 (772)
T KOG0999|consen 203 IKRLEE-----------------ETELLNSQLEEAIRLKEIAE--KQLEEALETLQQEREQKNALKKELSQYRNAE 259 (772)
T ss_pred HHHHHH-----------------HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhHHHHHHHHHHHHHHhcchh
Confidence 433322 2333434444433 34433 4577888888888889999999998887764
No 25
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.83 E-value=17 Score=42.46 Aligned_cols=67 Identities=12% Similarity=0.160 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHH
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVL 69 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~el 69 (482)
|..++.+|..++-+...+...+.....+|+..+.-..-++.+++.+...-............+..-+
T Consensus 247 l~~le~Ei~~L~~~~~~~~~~r~~~~k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~ 313 (775)
T PF10174_consen 247 LRDLEDEIYRLRSRGELSEADRDRLDKQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETL 313 (775)
T ss_pred HHHHHHHHHHHHhcccccccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888887777777778887777877777777777777766655444444444444444433
No 26
>PRK02224 chromosome segregation protein; Provisional
Probab=92.87 E-value=23 Score=41.23 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhHhh
Q 042777 414 QAMTRADAAERAKAGLEDQIRRYKERKQ 441 (482)
Q Consensus 414 ~Al~rAE~A~~~K~avE~ELRkWR~e~q 441 (482)
....+-+.+...--.+.+.|..++....
T Consensus 650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~ 677 (880)
T PRK02224 650 EAREDKERAEEYLEQVEEKLDELREERD 677 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555566666667777777777774
No 27
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.54 E-value=40 Score=43.16 Aligned_cols=75 Identities=17% Similarity=0.185 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVA 160 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~ 160 (482)
.+.+|...+..++.+..+-..+..++..+...++-+-+.+.+....-..-...+.+|...|.++..++.......
T Consensus 1475 l~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~ 1549 (1930)
T KOG0161|consen 1475 LKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKK 1549 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 345666666666666666666777777777777777777777777667777777777777777777655544443
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.02 E-value=38 Score=41.74 Aligned_cols=47 Identities=23% Similarity=0.352 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVR 309 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~ 309 (482)
...|..+|..++.++...+..+..+...+.-+..+...+......++
T Consensus 883 r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 883 RQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666655555433
No 29
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.68 E-value=34 Score=40.50 Aligned_cols=120 Identities=21% Similarity=0.317 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhccc-chh-HHHHHHHHHHHHHHHHHHhhhhhh
Q 042777 183 AKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSS-DKS-DVIKELKQVKEEMEVKERRNLVQA 260 (482)
Q Consensus 183 ~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s-~k~-~~~~EL~e~k~~le~k~e~~~~~~ 260 (482)
-+.+.++++...|.+++++.+ .++++.+.+++.|+.||..- ++.. +-+ .-.+-|++-+..|. +----++-
T Consensus 318 ldKEmAEERaesLQ~eve~lk---Er~deletdlEILKaEmeek---G~~~~~~ss~qfkqlEqqN~rLK--dalVrLRD 389 (1243)
T KOG0971|consen 318 LDKEMAEERAESLQQEVEALK---ERVDELETDLEILKAEMEEK---GSDGQAASSYQFKQLEQQNARLK--DALVRLRD 389 (1243)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhc---CCCCcccchHHHHHHHHHHHHHH--HHHHHHHh
Confidence 345567788888888887755 47888899999999999842 2211 111 12244555544553 22222343
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 261 FRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK 311 (482)
Q Consensus 261 ~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~ 311 (482)
...+=.-+.+++..|++..+.+..++...-+.|+.+++.+...+...++.
T Consensus 390 -lsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 390 -LSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred -cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23466677888888888888888999988899999999888888855554
No 30
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.58 E-value=39 Score=41.03 Aligned_cols=92 Identities=20% Similarity=0.160 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 120 KAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL 199 (482)
Q Consensus 120 ~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~ 199 (482)
.|.+-|..+.-.+....+..+.|-.-...++..++.--.-...|. +|++ +.+..-+.-|.++..+ +
T Consensus 1644 ~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar-~rAe------~L~~eA~~Ll~~a~~k-------l 1709 (1758)
T KOG0994|consen 1644 QAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAAR-ERAE------QLRTEAEKLLGQANEK-------L 1709 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHH-HHHH------HHHHHHHHHHHHHHHH-------H
Confidence 344455555555555555555555555555554433322222222 1111 1122223333444444 4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 042777 200 EMIQELEIELLEKSIVSDLLRLELEQ 225 (482)
Q Consensus 200 e~~k~LE~KL~ets~~i~~Lq~EL~~ 225 (482)
...+||+-++..++.-|+.+..+|.+
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~ 1735 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAG 1735 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 55567887888888888888888775
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=91.29 E-value=34 Score=39.72 Aligned_cols=45 Identities=33% Similarity=0.358 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042777 180 VAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 180 ~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
.|...+.+.+..+..|.+++....+++.++......+..+..++.
T Consensus 529 ~l~~~~~~l~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (880)
T PRK03918 529 KLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELA 573 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555544444444444443
No 32
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=90.96 E-value=19 Score=36.28 Aligned_cols=118 Identities=22% Similarity=0.324 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHHH-HHHH
Q 042777 180 VAKAKAAKAEEQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEME-VKER 254 (482)
Q Consensus 180 ~~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le-~k~e 254 (482)
.+...|..++.++..+++.+ ....+|+.+......+|..++..++......+ .++ ..++++.+...+. ++++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~-~v~--~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLS-AVK--DERELRALNIEIQIAKER 104 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--cHHHHHHHHHHHHHHHHH
Confidence 45556666666777776665 34456666666666666666666665544332 222 2368888888887 6666
Q ss_pred hhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 255 RNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRA 301 (482)
Q Consensus 255 ~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~A 301 (482)
..++.. .+..|..++..++.++...+..+..+...+-.+...++.+
T Consensus 105 ~~~le~-el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e 150 (239)
T COG1579 105 INSLED-ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150 (239)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 565555 4556666666666665555555555555544444444433
No 33
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.81 E-value=65 Score=39.22 Aligned_cols=74 Identities=18% Similarity=0.340 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 238 VIKELKQVKEEMEVKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK 311 (482)
Q Consensus 238 ~~~EL~e~k~~le~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~ 311 (482)
..+-+++++..|........-....++++..+|..++.|+..+......+......+..-....+..+.+++..
T Consensus 519 ~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~ 592 (1293)
T KOG0996|consen 519 GLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSS 592 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555542211111122246677777777777777777777777777777766666666666655543
No 34
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=88.36 E-value=48 Score=37.22 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=57.7
Q ss_pred ceeecHHHHHHHHhHHHHHHHhHHHhhh-hhc--ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 042777 352 FVVISAEEYDLLVKKAVKADEVSMALVE-CYP--IQPESKDELETSKKKLEGATAKIRELRNRVEQAMTRADAAERAKAG 428 (482)
Q Consensus 352 ~ITiS~eEYe~Ls~ka~eaEe~a~~kVa-aA~--~qvak~sE~e~l~~kLE~~~keiee~k~ale~Al~rAE~A~~~K~a 428 (482)
.+-....+-..|+...+.+++.-..+-. .-. .++.+..... . --|.++.++|.+.+.++..+-..-|.=.+-|--
T Consensus 365 ~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n-~-vqlsE~~rel~Elks~lrv~qkEKEql~~EkQe 442 (546)
T PF07888_consen 365 SAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCN-R-VQLSENRRELQELKSSLRVAQKEKEQLQEEKQE 442 (546)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567778888888887765544422 222 4455554444 2 469999999999999999888877766666666
Q ss_pred HHHHHHHHHhH
Q 042777 429 LEDQIRRYKER 439 (482)
Q Consensus 429 vE~ELRkWR~e 439 (482)
+=+-+++-+.+
T Consensus 443 L~~yi~~Le~r 453 (546)
T PF07888_consen 443 LLEYIERLEQR 453 (546)
T ss_pred HHHHHHHHHHH
Confidence 55666666655
No 35
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=88.02 E-value=11 Score=34.74 Aligned_cols=116 Identities=16% Similarity=0.129 Sum_probs=70.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQS-EDERGKYVEECTEARTCIDVLESKLKEMADQL 80 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a-~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~ 80 (482)
||++++++|+....++..++.+-.+..++|+.|-+++.|-..++..- --.-....--.+.. ++.. |+..
T Consensus 16 eL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wql--kvr~--------a~~d 85 (136)
T PF11570_consen 16 ELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQL--KVRR--------AQKD 85 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHH--HHHH--------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHH--HHHH--------HHHH
Confidence 78999999999999999999999999999999999988844332210 00011111111111 1111 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 81 AETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELME 129 (482)
Q Consensus 81 Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~ 129 (482)
+.. -..++..+-.+|-.+-.||..++-=+..+.+.+....++.-+|.
T Consensus 86 v~n--kq~~l~AA~~~l~~~~~el~~~~~al~~A~e~Rkq~eskk~dAe 132 (136)
T PF11570_consen 86 VQN--KQNKLKAAQKELNAADEELNRIQAALSQAMERRKQKESKKKDAE 132 (136)
T ss_dssp HHH--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHCCC
T ss_pred HHH--HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 332 34566777778888888888888888888888888877766554
No 36
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=87.74 E-value=96 Score=39.94 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
+...|...-..+..++.++..++..++.+..+|..-.....+..+-.....+++..|.+-...+-..+....
T Consensus 955 ~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le 1026 (1930)
T KOG0161|consen 955 LELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLE 1026 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566677777777788888777788787777776667777777777777777777776666665555444
No 37
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.63 E-value=24 Score=32.82 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 24 QKQALLKLDHYQKIADELST-------LLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNE 96 (482)
Q Consensus 24 K~qal~ELe~akr~veEL~~-------kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~E 96 (482)
+.++..+|.++++-.+-|.. .|+.++.....++-|.|.++.-+.. .-.+
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~------------------------L~~e 60 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIET------------------------LEEE 60 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH------------------------HHHH
Confidence 34566666666665555444 4555555555565555555433222 2336
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042777 97 LKAAQEELLSMETELAAARGLQL 119 (482)
Q Consensus 97 L~svKqEL~klr~E~~s~~e~k~ 119 (482)
+..+..+|..++.+++++..+|.
T Consensus 61 l~~lt~el~~L~~EL~~l~sEk~ 83 (140)
T PF10473_consen 61 LEELTSELNQLELELDTLRSEKE 83 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888888888873
No 38
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.49 E-value=55 Score=36.88 Aligned_cols=209 Identities=20% Similarity=0.228 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 26 QALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELL 105 (482)
Q Consensus 26 qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~EL~svKqEL~ 105 (482)
-|..++++.+--|+-|+..|+.+..+..+|-+ -...=||+. .. .+.||...-++++.++.||.
T Consensus 5 ~aeq~ve~lr~eierLT~el~q~t~e~~qaAe------yGL~lLeeK------~~-----Lkqq~eEleaeyd~~R~Eld 67 (772)
T KOG0999|consen 5 MAEQEVEKLRQEIERLTEELEQTTEEKIQAAE------YGLELLEEK------ED-----LKQQLEELEAEYDLARTELD 67 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH------HH-----HHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999988766655532 222222221 11 34578888888999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 042777 106 SMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKA 185 (482)
Q Consensus 106 klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l 185 (482)
++++-|.-...---. .+ -+.++.|=.=++|| |+ .++ ..-+.+....++|
T Consensus 68 qtkeal~q~~s~hkk----------~~------~~g~e~EesLLqES------aa---kE~------~yl~kI~eleneL 116 (772)
T KOG0999|consen 68 QTKEALGQYRSQHKK----------VA------RDGEEREESLLQES------AA---KEE------YYLQKILELENEL 116 (772)
T ss_pred HHHHHHHHHHHHHHH----------hh------ccchhhHHHHHHHH------HH---hHH------HHHHHHHHHHHHH
Confidence 888766443322100 01 11222222222221 11 110 1122334456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHhHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhh-
Q 042777 186 AKAEEQFEDLKRQLEMIQELEIELLEKSIVSD----LLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQA- 260 (482)
Q Consensus 186 ~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~----~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le~k~e~~~~~~- 260 (482)
.|.+.+|...+.+.+.....=+++.+....++ .|+.+|+.+|.-+.+-+ + =-.||++-...|+.. +..++.
T Consensus 117 Kq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~Rll-s-eYSELEEENIsLQKq--Vs~LR~s 192 (772)
T KOG0999|consen 117 KQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLL-S-EYSELEEENISLQKQ--VSNLRQS 192 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHhcchHHHH--HHHHhhh
Confidence 78888888888777777666667766665555 57777776654322111 0 124788777777511 122332
Q ss_pred -hcHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 261 -FRIESMETELHQLKLEVKNANEEMDS 286 (482)
Q Consensus 261 -~sv~sL~~EL~~~~~Ele~ar~~~~~ 286 (482)
|-..+|+-|++++..|++-.+..+++
T Consensus 193 QVEyEglkheikRleEe~elln~q~ee 219 (772)
T KOG0999|consen 193 QVEYEGLKHEIKRLEEETELLNSQLEE 219 (772)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999998887766665544
No 39
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.99 E-value=0.19 Score=58.66 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 042777 401 ATAKIRELRNRVEQAMTRADAAERAKAGLEDQIRRYK 437 (482)
Q Consensus 401 ~~keiee~k~ale~Al~rAE~A~~~K~avE~ELRkWR 437 (482)
..+.|+.+...|+...+---.+-.+|.=+|+.|.-+.
T Consensus 523 ~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe 559 (859)
T PF01576_consen 523 HQRQLESLEAELEEERKERAEALREKKKLESDLNELE 559 (859)
T ss_dssp -------------------------------------
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777776666655566677777777766654
No 40
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.44 E-value=74 Score=37.31 Aligned_cols=50 Identities=22% Similarity=0.315 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHhHh
Q 042777 390 ELETSKKKLEGATAKIRELRNRVEQAMTRADAAE-RAKAGLEDQIRRYKERK 440 (482)
Q Consensus 390 E~e~l~~kLE~~~keiee~k~ale~Al~rAE~A~-~~K~avE~ELRkWR~e~ 440 (482)
+...+ .+|+.+..+-+-....+...-.+++.-. ..--....++..|+...
T Consensus 431 ~~~~~-~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~ 481 (775)
T PF10174_consen 431 EDEAL-ETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKL 481 (775)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566 8999999999999999988877777433 34457788888888874
No 41
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=84.86 E-value=32 Score=36.63 Aligned_cols=132 Identities=20% Similarity=0.315 Sum_probs=83.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHH--------HHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccch
Q 042777 168 CKILSEIDAELEVAKAKAAKAEEQFE--------DLKRQLEM----IQELEIELLEKSIVSDLLRLELEQSIEMLSSSDK 235 (482)
Q Consensus 168 ~~i~~e~~~~~~~~~~~l~qae~el~--------~Lk~e~e~----~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k 235 (482)
.....+...+...|+.+++-.--.|. +=+..++. ...++..+..+...+..|+.++...-+--.+.-+
T Consensus 183 ~~~i~es~vd~~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk 262 (359)
T PF10498_consen 183 PEEIIESKVDPAEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREK 262 (359)
T ss_pred hhhcccccCCHHHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677788899988888777775 33444544 4555666677888888888888865332211111
Q ss_pred h------HHHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH
Q 042777 236 S------DVIKELKQVKEEME-VKERRNLVQAFRIESMETELHQLKLEVKNANEEMDS-------------LKSNAEMLT 295 (482)
Q Consensus 236 ~------~~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~-------------l~~~l~~l~ 295 (482)
. ....++..++..|. +...-+.... .|..+..+|++++.+|+..+.+|++ ++..+.+|+
T Consensus 263 ~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~-~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk 341 (359)
T PF10498_consen 263 YINNQLEPLIQEYRSAQDELSEVQEKYKQASE-GVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLK 341 (359)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH
Confidence 1 24445666666664 3333333333 6788888888888888888887766 445566666
Q ss_pred HHHHH
Q 042777 296 DLLQR 300 (482)
Q Consensus 296 ~E~e~ 300 (482)
.|+-+
T Consensus 342 ~EI~q 346 (359)
T PF10498_consen 342 QEIKQ 346 (359)
T ss_pred HHHHH
Confidence 66544
No 42
>PRK11637 AmiB activator; Provisional
Probab=84.65 E-value=61 Score=34.76 Aligned_cols=67 Identities=13% Similarity=0.246 Sum_probs=28.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHH
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVL 69 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~el 69 (482)
|+.+++++...+..+.........+..+|....+-+..+..+|...+..-.....+....+..+..+
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~ 115 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKL 115 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444433333334344444344443
No 43
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=84.56 E-value=0.3 Score=57.11 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhhh
Q 042777 142 LSRHVSELNEALFKAELVAIEAHGEK 167 (482)
Q Consensus 142 Ls~Ei~~lkEsl~~~~~A~~eAeee~ 167 (482)
|..||..+.-.|......+..-++.+
T Consensus 354 L~~EleDl~~eLe~~~~~~~~LeKKq 379 (859)
T PF01576_consen 354 LQGELEDLTSELEKAQAAAAELEKKQ 379 (859)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444433
No 44
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.44 E-value=50 Score=33.51 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQ 118 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k 118 (482)
.+.+|.........+..++..++.+++...-.+
T Consensus 87 ~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r 119 (312)
T PF00038_consen 87 LRRKYEEELAERKDLEEELESLRKDLDEETLAR 119 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence 667777777788888888888887776655555
No 45
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.04 E-value=36 Score=30.78 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQA 125 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~A 125 (482)
.|+.++..|..++.++..++.++..+....+.|-..-
T Consensus 53 ~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l 89 (132)
T PF07926_consen 53 KHAEDIKELQQLREELQELQQEINELKAEAESAKAEL 89 (132)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888877666665554433
No 46
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=80.62 E-value=84 Score=33.49 Aligned_cols=39 Identities=8% Similarity=0.129 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 76 MADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARG 116 (482)
Q Consensus 76 ~~k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e 116 (482)
.|+..|+- ++..+..+-.-+..++..|.+|+.++...++
T Consensus 217 DWR~hleq--m~~~~~~I~~~~~~~~~~L~kl~~~i~~~le 255 (359)
T PF10498_consen 217 DWRSHLEQ--MKQHKKSIESALPETKSQLDKLQQDISKTLE 255 (359)
T ss_pred hHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 36777776 7776777777778888888888887765543
No 47
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=79.00 E-value=1.3e+02 Score=34.83 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQ 124 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~ 124 (482)
...+|...+.-...-|+-|..+.+-+..-...|....++
T Consensus 472 Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQ 510 (697)
T PF09726_consen 472 LQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQ 510 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555444443
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=77.56 E-value=1.7e+02 Score=35.33 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--------hhhHhHHHHHHHHHHHHHHHhHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGME--------KDKSDMLSRHVSELNEALFKAELVA 160 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~--------~~kveeLs~Ei~~lkEsl~~~~~A~ 160 (482)
-|-..+.++.....++...++++ .++..+++..++.++..+-. ..++.+|.++|..++--++.+..-.
T Consensus 735 e~~~~~~~~~~~~e~v~e~~~~I----ke~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ 810 (1174)
T KOG0933|consen 735 EFHKLLDDLKELLEEVEESEQQI----KEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKEL 810 (1174)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777777666665 45566666666666544332 4678999999999988777776666
Q ss_pred HHHhhhhhhhhhhhH
Q 042777 161 IEAHGEKCKILSEID 175 (482)
Q Consensus 161 ~eAeee~~~i~~e~~ 175 (482)
...+.+...+.++.+
T Consensus 811 ek~~~e~e~l~lE~e 825 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHE 825 (1174)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666555555555543
No 49
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=77.08 E-value=1.4e+02 Score=33.98 Aligned_cols=68 Identities=19% Similarity=0.225 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhH
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLES 71 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~ 71 (482)
++.+..+|..|..+... +..-..++.+++...+.+.++...++.............+.+..+...+++
T Consensus 184 ~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~ 251 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEK 251 (650)
T ss_pred HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776555432 223445666666666666666666666655555555555555555555544
No 50
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=75.33 E-value=1.7e+02 Score=34.14 Aligned_cols=173 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHH
Q 042777 9 DLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLRE 88 (482)
Q Consensus 9 El~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~are 88 (482)
||.|++.||...|..|+..+.-|...++- |+. ++.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~q-------------------------------------------Le~--a~~ 300 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQ-------------------------------------------LEH--AQG 300 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH-------------------------------------------HHH--HHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH------------HHHHHhhhhhhhHhHHHHHHHHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMET-----ELAAARGLQLKAMTQAE------------LMESAAGMEKDKSDMLSRHVSELNE 151 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~-----E~~s~~e~k~~A~~~Ae------------ea~~~a~~~~~kveeLs~Ei~~lkE 151 (482)
-...-..-+.....-|..++. +..+..+.-..--..-+ --.+.-.....-|..|..+|..++.
T Consensus 301 als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~ 380 (717)
T PF09730_consen 301 ALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVDINGLEILECKYKVAVSEVIQLKAELKALKS 380 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 152 ALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 152 sl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
.+...+..+-+....-..-+..-......|.....+.++.+..|..++ ..+.+-...|..+-.++-.+-.+|.+.
T Consensus 381 k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqL 459 (717)
T PF09730_consen 381 KYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQL 459 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
No 51
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=74.66 E-value=1.1e+02 Score=31.51 Aligned_cols=88 Identities=14% Similarity=0.149 Sum_probs=62.7
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhh----hhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 042777 136 KDKSDMLSRHVSELNEALFKAELVAIEAHGEKCK----ILSEIDAELEVAKAKAAKAEEQFEDLKRQ-LEMIQELEIELL 210 (482)
Q Consensus 136 ~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~----i~~e~~~~~~~~~~~l~qae~el~~Lk~e-~e~~k~LE~KL~ 210 (482)
.-.+.-|+-|+++.|+-+++.+.-.-+-+..-.. .-+.++ ...-|-.+|+|+...|+.-++- +-+..|++.+|.
T Consensus 65 ~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aike-ql~kyiReLEQaNDdLErakRati~sleDfeqrLn 143 (333)
T KOG1853|consen 65 ETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKE-QLRKYIRELEQANDDLERAKRATIYSLEDFEQRLN 143 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHH
Confidence 3356778889999999888877655544432221 222333 3466888999999999888776 578889999999
Q ss_pred HhHHHHHHHHHHHH
Q 042777 211 EKSIVSDLLRLELE 224 (482)
Q Consensus 211 ets~~i~~Lq~EL~ 224 (482)
-+-.-+..|..||-
T Consensus 144 qAIErnAfLESELd 157 (333)
T KOG1853|consen 144 QAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777777776665
No 52
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=74.19 E-value=2.1e+02 Score=34.63 Aligned_cols=148 Identities=18% Similarity=0.119 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhhHHHHHHHHhhHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 042777 20 KDSAQKQALLKLDHYQKIADELSTLLKQSE---DERGKYVEECTEARTCIDVLESKLKEM-ADQLAETARLREQLLHVLN 95 (482)
Q Consensus 20 aE~~K~qal~ELe~akr~veEL~~kLe~a~---~~~~~A~qd~E~ak~r~~elE~~~~~~-~k~~Le~~~areqya~~~~ 95 (482)
-+..|.+.|.|.-.|+--=+.....|.--. ..+.+-..-+.-..-|+.+||+...+. -=++|+-.+-.-+|+---.
T Consensus 151 kD~eRL~LLkeVaGtrvYeerreeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdr 230 (1200)
T KOG0964|consen 151 KDSERLELLKEVAGTRVYEERREESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDR 230 (1200)
T ss_pred CcHHHHHHHHHhcccchhHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhh
Confidence 355667777776666533332222222111 112222233344456777787776542 2334554334467999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhh
Q 042777 96 ELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEK 167 (482)
Q Consensus 96 EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~ 167 (482)
||+-+..+|.+|..++.++.+.-..-..+-..+...+......+.+|...+..+++..+++.+-.-..-+.+
T Consensus 231 El~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k 302 (1200)
T KOG0964|consen 231 ELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK 302 (1200)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988888888888888888999999999999999998888776655555444
No 53
>PHA02562 46 endonuclease subunit; Provisional
Probab=73.29 E-value=1.5e+02 Score=32.51 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAA 114 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~ 114 (482)
.+.+|..........+.++..++.++..+
T Consensus 218 l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 218 KQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555444
No 54
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.42 E-value=2.9e+02 Score=35.56 Aligned_cols=257 Identities=18% Similarity=0.242 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHH-------H----HHHHHHHHHHHHHHHHHHHHHH
Q 042777 29 LKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLK-------E----MADQLAETARLREQLLHVLNEL 97 (482)
Q Consensus 29 ~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~-------~----~~k~~Le~~~areqya~~~~EL 97 (482)
.+++..+.-+..++.+|.........|..-.+....-+.-+.+.+. . +.+++..+......|..+=.-+
T Consensus 661 e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~ 740 (1822)
T KOG4674|consen 661 EDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTVHTLSQELLSANEKL 740 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3455555556666666666655555555544444333333222221 0 1233322222445555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHH
Q 042777 98 KAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAE 177 (482)
Q Consensus 98 ~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~ 177 (482)
..+..|+..+++|-............ -.+-|+.+...++--+..+..-+-.-++-....
T Consensus 741 ~~le~ev~~LKqE~~ll~~t~~rL~~--------------e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~------- 799 (1822)
T KOG4674|consen 741 EKLEAELSNLKQEKLLLKETEERLSQ--------------ELEKLSAEQESLQLLLDNLQTQKNELEESEMAT------- 799 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 66666666666665555544433322 234555566655554444443333333222111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccc--hhHHHHHHHHHHH
Q 042777 178 LEVAKAKAAKAEEQFEDLKRQL--------EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSD--KSDVIKELKQVKE 247 (482)
Q Consensus 178 ~~~~~~~l~qae~el~~Lk~e~--------e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~--k~~~~~EL~e~k~ 247 (482)
+..|...+.++..+|..|+.++ +...++...|..+...|+.+..++..+.....+-. .......+.++.+
T Consensus 800 k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k 879 (1822)
T KOG4674|consen 800 KDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEK 879 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2334444555555555555553 56677777777888888887777775533221100 0012224444444
Q ss_pred HHH-HHHHh--------hhhhhhcHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 042777 248 EME-VKERR--------NLVQAFRIESMETELHQL---KLEVKNANEEMDS-------LKSNAEMLTDLLQRAKTEMD 306 (482)
Q Consensus 248 ~le-~k~e~--------~~~~~~sv~sL~~EL~~~---~~Ele~ar~~~~~-------l~~~l~~l~~E~e~Ak~~~~ 306 (482)
.|. ....- +...++-+++|+.++.+. +..+..+...+.+ +-..+.+...+.+..+....
T Consensus 880 ~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~~~~e 957 (1822)
T KOG4674|consen 880 RLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETRLELE 957 (1822)
T ss_pred HHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 443 11111 112222356677776666 3334333333333 33445555555555554433
No 55
>PHA02562 46 endonuclease subunit; Provisional
Probab=70.23 E-value=1.7e+02 Score=32.00 Aligned_cols=22 Identities=5% Similarity=0.037 Sum_probs=10.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 042777 203 QELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 203 k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
+.++..+......+..++..+.
T Consensus 258 ~~l~~~~~~~~~~l~~~~~~~~ 279 (562)
T PHA02562 258 NKLNTAAAKIKSKIEQFQKVIK 279 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 56
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=67.65 E-value=2e+02 Score=31.77 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Q 042777 178 LEVAKAKAAKAEEQFEDLKRQL-EMIQELEIELLEKSIVSDL 218 (482)
Q Consensus 178 ~~~~~~~l~qae~el~~Lk~e~-e~~k~LE~KL~ets~~i~~ 218 (482)
...|...+.+.+......+... +.+.||+.+|-..+..|+.
T Consensus 412 q~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 412 QDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 3678888877777777776665 7788888888776666654
No 57
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=66.55 E-value=3.3e+02 Score=33.80 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 042777 110 ELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAE 189 (482)
Q Consensus 110 E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae 189 (482)
.+.--+.++...+..++.-....+.+..+++.|..+-.+.+..-+..+-....-. +.+.+-++-...-+..++++.
T Consensus 1515 ~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~----eaL~~Ad~Aq~~a~~ai~~a~ 1590 (1758)
T KOG0994|consen 1515 QLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVV----EALEEADVAQGEAQDAIQGAD 1590 (1758)
T ss_pred HHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhH
Confidence 3444556666777777777777777777777776666666655444443222211 122222322333344444444
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHH
Q 042777 190 EQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 190 ~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
..+....+.+ +.+...|..+..++.-|..|-.-|.
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 2233334444444444444444444
No 58
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=65.24 E-value=2.4e+02 Score=31.71 Aligned_cols=278 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHhhhHHHHHHHHhhHHHHhHHHHH----HHHHHHHHHHHHHHHHH----
Q 042777 25 KQALLKLDHYQKIADELSTLLKQS----EDERGKYVEECTEARTCIDVLESKLKE----MADQLAETARLREQLLH---- 92 (482)
Q Consensus 25 ~qal~ELe~akr~veEL~~kLe~a----~~~~~~A~qd~E~ak~r~~elE~~~~~----~~k~~Le~~~areqya~---- 92 (482)
.+|-.-|...+.-+..|...++.. ...+.--.....-.+....+|...+-. ....++.. .+++...
T Consensus 194 ~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~i~~~i~~--l~~~i~~~~~~ 271 (569)
T PRK04778 194 VEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQD--LKEQIDENLAL 271 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCChHHHHHH--HHHHHHHHHHH
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHh
Q 042777 93 --------VLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAH 164 (482)
Q Consensus 93 --------~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAe 164 (482)
+-..++...+.+..+-.-+..-..++..+.+..........-..+....|..||..++.+-...+
T Consensus 272 l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~------- 344 (569)
T PRK04778 272 LEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNE------- 344 (569)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCc-------
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchh--HH
Q 042777 165 GEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKS--DV 238 (482)
Q Consensus 165 ee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~--~~ 238 (482)
..-.....|...+....+.+..+...+ .....++..+......+..+..+.....+....--+. ++
T Consensus 345 --------~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eA 416 (569)
T PRK04778 345 --------SELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEA 416 (569)
T ss_pred --------hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHH---HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 042777 239 IKELKQVKEEME---VKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK---- 311 (482)
Q Consensus 239 ~~EL~e~k~~le---~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~---- 311 (482)
..-|...+..|. ..=+...++. ...+...-+..+..++......+..-|-++.....+.+.+.........+
T Consensus 417 r~kL~~~~~~L~~ikr~l~k~~lpg-ip~~y~~~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~~L~~q~~dL 495 (569)
T PRK04778 417 REKLERYRNKLHEIKRYLEKSNLPG-LPEDYLEMFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVETLEEETEEL 495 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -HHHHHHHHH
Q 042777 312 -ENVAKAEIV 320 (482)
Q Consensus 312 -~a~~e~E~a 320 (482)
.+..-+|..
T Consensus 496 ~~~a~~lE~~ 505 (569)
T PRK04778 496 VENATLTEQL 505 (569)
T ss_pred HHHHHHHHHH
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=65.19 E-value=1.6e+02 Score=29.78 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=16.1
Q ss_pred hhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 132 AGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 132 a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
.......++.|+.+|..+++.+....
T Consensus 112 l~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 112 LAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556777777777777655544
No 60
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=64.30 E-value=2.2 Score=48.86 Aligned_cols=39 Identities=38% Similarity=0.447 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 188 AEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 188 ae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
.+++...|...+.....++.+|...-..+..|..++...
T Consensus 286 LeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW 324 (722)
T PF05557_consen 286 LEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSW 324 (722)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777778888899999998888888888888853
No 61
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=63.77 E-value=2.3e+02 Score=30.95 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=71.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLA 81 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~L 81 (482)
.|..+..+|.-...+...+|+++..|-+||..++--=+-....+..++...-.|.|+.--...++..+.+. |
T Consensus 82 qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtr--------l 153 (499)
T COG4372 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTR--------L 153 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H
Confidence 46778899999999999999999999999999987777777778777777777777766666555555333 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 82 ETARLREQLLHVLNELKAAQEELLSME 108 (482)
Q Consensus 82 e~~~areqya~~~~EL~svKqEL~klr 108 (482)
-+ .-.||....++++++--+-..|+
T Consensus 154 ~~--l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 154 KT--LAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 55666666667666554444333
No 62
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=63.04 E-value=3e+02 Score=32.09 Aligned_cols=131 Identities=11% Similarity=0.128 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHH---H-------HHHHHHHHHHHHH-
Q 042777 20 KDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLK---E-------MADQLAETARLRE- 88 (482)
Q Consensus 20 aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~---~-------~~k~~Le~~~are- 88 (482)
-...-..+-.||...+.-.|+|..+|-.....+.+-++.+.....|+.+. +... + .++..-+...+|.
T Consensus 451 l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE-~~~R~~lEkQL~eErk~r~~ee~~aar~~ 529 (697)
T PF09726_consen 451 LTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEE-RRQRASLEKQLQEERKARKEEEEKAARAL 529 (697)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHhhhhcc
Confidence 33334567788999999999999999999999999998888887777653 2221 1 0111111100111
Q ss_pred --------HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 042777 89 --------QLLHVLN-ELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNE 151 (482)
Q Consensus 89 --------qya~~~~-EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkE 151 (482)
.-+..+. -..-.-.|+.+||.|+...=+.......+..+...--+.+..-++.|...|.+|++
T Consensus 530 ~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqd 601 (697)
T PF09726_consen 530 AQAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQD 601 (697)
T ss_pred ccchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 0011000 01122357788888888777777777777755554435567778888888888888
No 63
>PRK04863 mukB cell division protein MukB; Provisional
Probab=58.87 E-value=4.8e+02 Score=33.17 Aligned_cols=59 Identities=10% Similarity=0.040 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHH
Q 042777 5 GLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEAR 63 (482)
Q Consensus 5 ~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak 63 (482)
.+=+|...|+.+...+...-..+-.-|.+...++.+|..+|.........+.+-.....
T Consensus 283 ~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e 341 (1486)
T PRK04863 283 VHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ 341 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677887777777777777777777777888888887777766666665544443
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.85 E-value=2.4e+02 Score=29.33 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 262 RIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMD 306 (482)
Q Consensus 262 sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~ 306 (482)
-+.+++.+|.....+++..+....++...++.+...++.......
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~ 254 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQ 254 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666555555555555555555555555444444
No 65
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=57.81 E-value=4.2e+02 Score=32.20 Aligned_cols=207 Identities=18% Similarity=0.229 Sum_probs=107.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---------HHHHHHHHhHHHHHhh--------------hHHH
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQ--ALLKLDHYQKIA---------DELSTLLKQSEDERGK--------------YVEE 58 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~q--al~ELe~akr~v---------eEL~~kLe~a~~~~~~--------------A~qd 58 (482)
+++++-|.-+-++|..-|..|-- .-.+|++.+|.+ .|...+|++....+-. +...
T Consensus 187 ekI~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~ 266 (1200)
T KOG0964|consen 187 EKINELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDE 266 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHH
Confidence 35556666666666666666543 345666666543 3455555554433333 3333
Q ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 042777 59 CTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDK 138 (482)
Q Consensus 59 ~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~k 138 (482)
++..+..+.+|+..+.. ...+.+. +..+|+..+.....+.=....++.+...-...+..++..-....+....+...
T Consensus 267 ~~~~~~~i~ele~~l~~-l~~ekeq--~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~E 343 (1200)
T KOG0964|consen 267 SEDLKCEIKELENKLTN-LREEKEQ--LKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDE 343 (1200)
T ss_pred HHHHHhHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 44444444444443322 2223444 55667777777777777777777777777777766666555555444444443
Q ss_pred HhHHHHHHHHHHHHH--HHhHHHHHHHhhhhhhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 139 SDMLSRHVSELNEAL--FKAELVAIEAHGEKCKILSE--------IDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIE 208 (482)
Q Consensus 139 veeLs~Ei~~lkEsl--~~~~~A~~eAeee~~~i~~e--------~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~K 208 (482)
.....-.-..+.+.- ....++..+- ++..+++. ...++..| ...++..|+.-|-..+..++.
T Consensus 344 L~~I~Pky~~l~~ee~~~~~rl~~l~~--~~~~l~~Kqgr~sqFssk~eRDkw------ir~ei~~l~~~i~~~ke~e~~ 415 (1200)
T KOG0964|consen 344 LSKIEPKYNSLVDEEKRLKKRLAKLEQ--KQRDLLAKQGRYSQFSSKEERDKW------IRSEIEKLKRGINDTKEQENI 415 (1200)
T ss_pred HHHhhhHHHHHHhHHHHHHHHHHHHHH--HHHHHHHhhccccccCcHHHHHHH------HHHHHHHHHHHHhhhhhHHHH
Confidence 333333322222211 1112222211 11111111 11356677 677788888877777777766
Q ss_pred HHHhHHHHHHHHHHHH
Q 042777 209 LLEKSIVSDLLRLELE 224 (482)
Q Consensus 209 L~ets~~i~~Lq~EL~ 224 (482)
|.. +|+.+..+++
T Consensus 416 lq~---e~~~~e~~l~ 428 (1200)
T KOG0964|consen 416 LQK---EIEDLESELK 428 (1200)
T ss_pred HHH---HHHHHHHHHH
Confidence 654 6666666665
No 66
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=57.45 E-value=1e+02 Score=30.48 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLL 298 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~ 298 (482)
+.....||.+.+.|....+.++..+...+..|..+.
T Consensus 68 LE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l 103 (202)
T PF06818_consen 68 LEVCENELQRKKNEAELLREKLGQLEAELAELREEL 103 (202)
T ss_pred HHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHH
Confidence 444455555555555555555444444444444433
No 67
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=57.15 E-value=55 Score=37.70 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 042777 99 AAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALF 154 (482)
Q Consensus 99 svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~ 154 (482)
.+...|..++.+..++++.....-..+.........-......+..++..++..+.
T Consensus 340 ~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~ 395 (722)
T PF05557_consen 340 DLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLE 395 (722)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666555555544444444333333333333444444444444433
No 68
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=56.43 E-value=3.1e+02 Score=30.27 Aligned_cols=116 Identities=16% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHH---HHHHH-HHHHhhhhhh----hcHHHHHHHHH
Q 042777 200 EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQV---KEEME-VKERRNLVQA----FRIESMETELH 271 (482)
Q Consensus 200 e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~---k~~le-~k~e~~~~~~----~sv~sL~~EL~ 271 (482)
.+++||| -|.-+...+..||..|.. ++.|-..| |.+|+ ..++.+.++. +-..-.+.||.
T Consensus 246 km~kdle-~Lq~aEqsl~dlQk~Lek------------ar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE 312 (575)
T KOG4403|consen 246 KMMKDLE-GLQRAEQSLEDLQKRLEK------------AREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELE 312 (575)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH------------HHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchh
Q 042777 272 QLKLEVKNANEEMDS-----LKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTR 328 (482)
Q Consensus 272 ~~~~Ele~ar~~~~~-----l~~~l~~l~~E~e~Ak~~~~~a~~~~a~~e~E~aka~~~~l~ 328 (482)
+++-.|+.|..+.+. .|-.||..-+=+..-...-...+..-+++++-.|+-...+++
T Consensus 313 ~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklk 374 (575)
T KOG4403|consen 313 QLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLK 374 (575)
T ss_pred HHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
No 69
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=54.14 E-value=1.9e+02 Score=26.97 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 90 LLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 90 ya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
...+=++-++.++-+..+..++..+=..+..++..|+-+..-...-...++.++.++..+...|....
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~ 79 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLR 79 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444466667777777888888888888888888888888888888888888888888888776665
No 70
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=50.81 E-value=5.1e+02 Score=31.08 Aligned_cols=30 Identities=7% Similarity=-0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 042777 19 AKDSAQKQALLKLDHYQKIADELSTLLKQS 48 (482)
Q Consensus 19 ~aE~~K~qal~ELe~akr~veEL~~kLe~a 48 (482)
.....+++.-.....|++.+.-++..+...
T Consensus 341 e~~~~~~~l~~~~~ear~~~~q~~~ql~~l 370 (980)
T KOG0980|consen 341 EVAQLKAQLENLKEEARRRIEQYENQLLAL 370 (980)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334455555566667777766666655443
No 71
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=48.80 E-value=4e+02 Score=29.23 Aligned_cols=68 Identities=13% Similarity=0.239 Sum_probs=57.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHh
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLE 70 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE 70 (482)
|+.+|+||......+........+...+|...+.-+..+++.|-.+......-.++......++..++
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999998887766666666666665555553
No 72
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=48.21 E-value=4.2e+02 Score=29.36 Aligned_cols=129 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhh
Q 042777 92 HVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKIL 171 (482)
Q Consensus 92 ~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~ 171 (482)
..-.+|..+.+|+..++..+..+...+...+.--.... ......+..|...+..+...+..-.-..+.+. ..+
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~---~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~----~~f 185 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVS---RLQNGAPRSLQEKLSLLDEALKREDGNAITAV----VEF 185 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHH---HHHHHHHhhHHHHHHHHHHHHHhcCccHHHHH----HHH
Confidence 33456777888888888888888777777665433332 22333335555555544443333222222222 233
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Q 042777 172 SEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSI 227 (482)
Q Consensus 172 ~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~k 227 (482)
..+--....+...|.+.-.-+..+-..+-.+.++...+.-..........+|.+|+
T Consensus 186 l~rtl~~e~~~~~L~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 186 LKRTLKKEIERQELEERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333444444444444444556667777777777777777777777765
No 73
>PF15294 Leu_zip: Leucine zipper
Probab=45.76 E-value=3.7e+02 Score=27.92 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 96 ELKAAQEELLSMETELAAARGLQLKAMTQAELMES 130 (482)
Q Consensus 96 EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~ 130 (482)
|.+..|.=|..+...+..++++|...-.+..+...
T Consensus 140 EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 140 ENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555666666666655554444443
No 74
>PRK09039 hypothetical protein; Validated
Probab=43.94 E-value=4.1e+02 Score=27.99 Aligned_cols=36 Identities=14% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 78 DQLAETARLREQLLHVLNELKAAQEELLSMETELAAAR 115 (482)
Q Consensus 78 k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~ 115 (482)
..+|.. .+..|+..-..+..+++++..||..++++-
T Consensus 122 ~~~L~~--~k~~~se~~~~V~~L~~qI~aLr~Qla~le 157 (343)
T PRK09039 122 AQELDS--EKQVSARALAQVELLNQQIAALRRQLAALE 157 (343)
T ss_pred HHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444555 677899999999999999999998865553
No 75
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=43.72 E-value=5.4e+02 Score=29.24 Aligned_cols=37 Identities=8% Similarity=0.133 Sum_probs=21.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIA 38 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~v 38 (482)
||-.+.--|..|=+.+.+-|+.......+|.-.+..+
T Consensus 43 El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~ 79 (546)
T KOG0977|consen 43 ELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVV 79 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3444555566666666666666666666655555443
No 76
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=43.63 E-value=2.5e+02 Score=25.40 Aligned_cols=19 Identities=37% Similarity=0.380 Sum_probs=9.4
Q ss_pred HhHHHHHHHHHHHHHhHhh
Q 042777 211 EKSIVSDLLRLELEQSIEM 229 (482)
Q Consensus 211 ets~~i~~Lq~EL~~~ke~ 229 (482)
+++..++-|+..+.++|+|
T Consensus 93 EK~E~veEL~~Dv~DlK~m 111 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEM 111 (120)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4444555555555544443
No 77
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=42.46 E-value=7.1e+02 Score=30.28 Aligned_cols=29 Identities=17% Similarity=0.152 Sum_probs=19.2
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHHhHH
Q 042777 130 SAAGMEKDKSDMLSRHVSELNEALFKAEL 158 (482)
Q Consensus 130 ~~a~~~~~kveeLs~Ei~~lkEsl~~~~~ 158 (482)
..+-.....++.|..+|......+.....
T Consensus 770 ~~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 770 LAALLDEETLTQLEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666677777777777776666654
No 78
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=41.85 E-value=2.9e+02 Score=25.55 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 042777 119 LKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDL 195 (482)
Q Consensus 119 ~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~L 195 (482)
......++...+....-.+.++..-.-+..+.+-+..+.......+.....+ +..+..|...+++...++..+
T Consensus 69 ~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l----e~~~~~~E~k~eel~~k~~~~ 141 (143)
T PF12718_consen 69 EKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKAL----EQERDQWEEKYEELEEKYKEA 141 (143)
T ss_pred HHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555555555555555555555555444444443322222 233456666555555555443
No 79
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=41.62 E-value=3.8e+02 Score=26.92 Aligned_cols=48 Identities=23% Similarity=0.297 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 042777 5 GLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDER 52 (482)
Q Consensus 5 ~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~ 52 (482)
.+.++-..|..++...+..-.++-.+|.....++..|..++..++.+.
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea 49 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEA 49 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666778888888888888889999999999999999988776443
No 80
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=41.29 E-value=3.7e+02 Score=26.66 Aligned_cols=187 Identities=18% Similarity=0.174 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhH
Q 042777 96 ELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEID 175 (482)
Q Consensus 96 EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~ 175 (482)
.+..++++|..-+.-|..+..--.-|.+-+.+.....++...+...+--.+..+--.+--++.-..+|....
T Consensus 12 ri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE~adrK~-------- 83 (205)
T KOG1003|consen 12 RIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAEKADRKY-------- 83 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 455666666666666666666666677777777777777777776666666555554544444444443222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhc-ccchh-HHHHHHHHHHHHHH--H
Q 042777 176 AELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLS-SSDKS-DVIKELKQVKEEME--V 251 (482)
Q Consensus 176 ~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~-~s~k~-~~~~EL~e~k~~le--~ 251 (482)
......|.-.+-.|+..-.- +.-=+++......++..+.+.|+.+.-... .+.+. ....+++.+...|. .
T Consensus 84 ---eEVarkL~iiE~dLE~~eer---aE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE 157 (205)
T KOG1003|consen 84 ---EEVARKLVIIEGELERAEER---AEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAE 157 (205)
T ss_pred ---HHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhh
Confidence 11111222222222222221 111223333333344444444443211100 01111 13346666666774 2
Q ss_pred HHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 252 KERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLL 298 (482)
Q Consensus 252 k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~ 298 (482)
.-.++.-+ +|..|..+.+.+...+.+.+.+...+...+.+...++
T Consensus 158 ~rAE~aER--sVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L 202 (205)
T KOG1003|consen 158 TRAEFAER--RVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQEL 202 (205)
T ss_pred hhHHHHHH--HHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 22223334 4788888888888888888777777777666665544
No 81
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.20 E-value=4.3e+02 Score=27.41 Aligned_cols=105 Identities=12% Similarity=0.072 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHH---H--HHHHHH
Q 042777 7 LKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLK---E--MADQLA 81 (482)
Q Consensus 7 qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~---~--~~k~~L 81 (482)
......+..++........+...++...+..+..+..++..++.....+.......+.-. +.|.. + ..+..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~---~~g~is~~~~~~~~~~~ 205 (423)
T TIGR01843 129 KGQQSLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLK---EKGLVSRLELLELERER 205 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHHHHHH
Confidence 344445555666666666666677777777777777666666555444444333221111 11111 1 122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 82 ETARLREQLLHVLNELKAAQEELLSMETELAAARG 116 (482)
Q Consensus 82 e~~~areqya~~~~EL~svKqEL~klr~E~~s~~e 116 (482)
.. ++..+..+-++|..++.++..++.++.....
T Consensus 206 ~~--~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~ 238 (423)
T TIGR01843 206 AE--AQGELGRLEAELEVLKRQIDELQLERQQIEQ 238 (423)
T ss_pred HH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 4555566666666666666666665554443
No 82
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=40.81 E-value=6.6e+02 Score=29.43 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHh
Q 042777 92 HVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKA 156 (482)
Q Consensus 92 ~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~ 156 (482)
..+.++.++-+...-++....-++.++..+....=.+++.....-....-|..+...|++.+...
T Consensus 451 ~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l 515 (698)
T KOG0978|consen 451 CLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTL 515 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443444444444444455555555555544433
No 83
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=40.66 E-value=7.7e+02 Score=30.21 Aligned_cols=137 Identities=20% Similarity=0.194 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----HHhhhhhhhHhHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAA-----------ARGLQLKAMTQAELME----SAAGMEKDKSDMLSRHVSELN 150 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s-----------~~e~k~~A~~~Aeea~----~~a~~~~~kveeLs~Ei~~lk 150 (482)
..+.|.....++.++..++..+.+.-+. .+..+..-+.+..-+. .......++++.+...|....
T Consensus 263 l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~ 342 (1174)
T KOG0933|consen 263 LDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDR 342 (1174)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHH
Confidence 5567888888888888888888884433 2222222222322222 222333445555555555555
Q ss_pred HHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 151 EALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMI----QELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 151 Esl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~----k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
..+--=..++..-+. .+....+........++..++.++.|..-++.. ..|+.+|..+-..+...+.+++.+
T Consensus 343 ~~l~~k~~~~~~~~~----~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a 418 (1174)
T KOG0933|consen 343 KKLKEKEKAMAKVEE----GYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQA 418 (1174)
T ss_pred HHHHHHHHHHhhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 543333333222221 111222233455677888888888888877544 448888888888888888887754
No 84
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=39.32 E-value=2.2e+02 Score=23.58 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAM-----TQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVA 160 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~-----~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~ 160 (482)
+...++.+...+......|..+...+......-.... ........-...-...+..+...|..+...+....-.-
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l 82 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREEL 82 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777766643333333 22222333333333344444444444444444444444
Q ss_pred HHHhh
Q 042777 161 IEAHG 165 (482)
Q Consensus 161 ~eAee 165 (482)
.++..
T Consensus 83 ~~a~~ 87 (123)
T PF02050_consen 83 QEARR 87 (123)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 85
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=37.60 E-value=5.3e+02 Score=27.39 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 77 ADQLAETARLREQLLHVLNELKAAQEELLSMET 109 (482)
Q Consensus 77 ~k~~Le~~~areqya~~~~EL~svKqEL~klr~ 109 (482)
.+.+++. ++..|..+-+.|..++..|...+.
T Consensus 156 S~~~ld~--a~~~~~~a~a~l~~a~~~l~~~~~ 186 (390)
T PRK15136 156 GREELQH--ARDAVASAQAQLDVAIQQYNANQA 186 (390)
T ss_pred CHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 666676666677666666655444
No 86
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.15 E-value=5.3e+02 Score=29.72 Aligned_cols=46 Identities=33% Similarity=0.313 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 178 LEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 178 ~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
.-.|...+...+..++.|..+ .++|+..+.+.-..|+.|..+|..+
T Consensus 417 i~~~~~~i~~~~~~ve~l~~e---~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 417 ITVYEKRIKKLEETVERLEEE---NSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654 3456666677667777777777654
No 87
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=36.24 E-value=7.3e+02 Score=28.62 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhh
Q 042777 98 KAAQEELLSMETE----LAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSE 173 (482)
Q Consensus 98 ~svKqEL~klr~E----~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e 173 (482)
..+.-+|.-++.- ..+-.++=...+..-+.|.+.+..-...++.|...+...|.+....+...+.+... ++-.
T Consensus 213 ~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~---~L~~ 289 (629)
T KOG0963|consen 213 EDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGS---VLNQ 289 (629)
T ss_pred HhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHH---HHhH
Confidence 3344455555444 34444444556667777777777777788888888888777777765555555432 3333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 042777 174 IDAELEVAKAKAAKAEEQFEDLKRQL-EMIQELEIELLEKSIVSDLLRLELEQS 226 (482)
Q Consensus 174 ~~~~~~~~~~~l~qae~el~~Lk~e~-e~~k~LE~KL~ets~~i~~Lq~EL~~~ 226 (482)
+|-.......+++..+.=+..+.... .-+..|+.+|.+....|+.|..+|...
T Consensus 290 kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~ 343 (629)
T KOG0963|consen 290 KDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR 343 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444444444444444444443332 556777778888777888777777743
No 88
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=36.11 E-value=3.8e+02 Score=25.32 Aligned_cols=33 Identities=24% Similarity=0.206 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 042777 192 FEDLKRQLEMIQELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 192 l~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~ 224 (482)
+..+...+....+++.---.-.+.+..|+.+|.
T Consensus 36 ~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~ 68 (177)
T PF07798_consen 36 LEKVAQDLVTKSDLENQEYLFKAAIAELRSELQ 68 (177)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444
No 89
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=36.10 E-value=5.1e+02 Score=26.79 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 042777 193 EDLKRQLEMIQELEIELLEKSIVSDLLR 220 (482)
Q Consensus 193 ~~Lk~e~e~~k~LE~KL~ets~~i~~Lq 220 (482)
+.|++-|+..--||+.|++..+.++..|
T Consensus 140 qrLnqAIErnAfLESELdEke~llesvq 167 (333)
T KOG1853|consen 140 QRLNQAIERNAFLESELDEKEVLLESVQ 167 (333)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4577789999999999999998887654
No 90
>PRK09039 hypothetical protein; Validated
Probab=35.93 E-value=5.5e+02 Score=27.09 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=9.7
Q ss_pred CceeecHHHHHHHHhHHH
Q 042777 351 AFVVISAEEYDLLVKKAV 368 (482)
Q Consensus 351 ~~ITiS~eEYe~Ls~ka~ 368 (482)
|+-+|+..-...|..=+.
T Consensus 231 gsa~L~~~~~~~L~~ia~ 248 (343)
T PRK09039 231 GSAELNPEGQAEIAKLAA 248 (343)
T ss_pred CCcccCHHHHHHHHHHHH
Confidence 445666655555554443
No 91
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=35.43 E-value=5.1e+02 Score=26.64 Aligned_cols=30 Identities=13% Similarity=0.016 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 78 DQLAETARLREQLLHVLNELKAAQEELLSMET 109 (482)
Q Consensus 78 k~~Le~~~areqya~~~~EL~svKqEL~klr~ 109 (482)
+.+++. ++.+|..+-.+|..++.++..+..
T Consensus 151 ~~~~~~--a~~~~~~a~~~l~~a~~~~~~~~~ 180 (346)
T PRK10476 151 AQQVDQ--ARTAQRDAEVSLNQALLQAQAAAA 180 (346)
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 555555555566665555554443
No 92
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=35.01 E-value=5.7e+02 Score=27.02 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchh------HHHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHH
Q 042777 200 EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKS------DVIKELKQVKEEME-VKERRNLVQAFRIESMETELHQ 272 (482)
Q Consensus 200 e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~------~~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~ 272 (482)
.+-++++.++..+-..+..|-+++..+=+--++.-|+ ....+...+...+- ++..-+.... -|.+-..+|+.
T Consensus 234 s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~-gv~~rT~~L~e 312 (384)
T KOG0972|consen 234 SMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASV-GVSSRTETLDE 312 (384)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHH
Confidence 5677889999999999999999988553322222222 02223333333332 2222233333 46677777777
Q ss_pred HHHHHHHHHHHHHH
Q 042777 273 LKLEVKNANEEMDS 286 (482)
Q Consensus 273 ~~~Ele~ar~~~~~ 286 (482)
|-.|++..+++|++
T Consensus 313 Vm~e~E~~KqemEe 326 (384)
T KOG0972|consen 313 VMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766655
No 93
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=33.95 E-value=5.7e+02 Score=26.75 Aligned_cols=47 Identities=15% Similarity=0.160 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHH
Q 042777 105 LSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNE 151 (482)
Q Consensus 105 ~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkE 151 (482)
..++++.....+.++..-.++.++.-.+......-+++..+|..+++
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666666666666666655666555555555
No 94
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=33.82 E-value=8.7e+02 Score=28.79 Aligned_cols=88 Identities=23% Similarity=0.204 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHH
Q 042777 99 AAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAEL 178 (482)
Q Consensus 99 svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~ 178 (482)
-+..|...+++++++++..+..+..++.-.- .+||+=..+.+.++.+-++....++..+-
T Consensus 21 kae~e~~~lk~~l~~~~~~~~~~e~r~~hld-----------------~aLkec~~qlr~~ree~eq~i~~~~~~~s--- 80 (769)
T PF05911_consen 21 KAEAEAASLKQQLEAATQQKLALEDRVSHLD-----------------GALKECMRQLRQVREEQEQKIHEAVAKKS--- 80 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhh-----------------HHHHHHHHHHHHhhHHHHHHHHHHHHHHh---
Confidence 3445556666677777777766655554332 24555566666666666554444544433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Q 042777 179 EVAKAKAAKAEEQFEDLKRQLEMIQ-ELEIELLEKSIVSDLLRLELE 224 (482)
Q Consensus 179 ~~~~~~l~qae~el~~Lk~e~e~~k-~LE~KL~ets~~i~~Lq~EL~ 224 (482)
. +++..+ +||.+|.+++..+..+..|-.
T Consensus 81 ~------------------e~e~~~~~le~~l~e~~~~l~~~~~e~~ 109 (769)
T PF05911_consen 81 K------------------EWEKIKSELEAKLAELSKRLAESAAENS 109 (769)
T ss_pred H------------------HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 2 334444 666666666665555555544
No 95
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=33.81 E-value=2.5e+02 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 042777 183 AKAAKAEEQFEDLKRQLEMIQELEIELLEK 212 (482)
Q Consensus 183 ~~l~qae~el~~Lk~e~e~~k~LE~KL~et 212 (482)
-.|+++.++|++|++=++-++ +-|.++
T Consensus 117 LALKEARkEIkQLkQvieTmr---ssL~ek 143 (305)
T PF15290_consen 117 LALKEARKEIKQLKQVIETMR---SSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hhhchh
Confidence 368899999999999765443 344444
No 96
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=33.73 E-value=3e+02 Score=27.52 Aligned_cols=80 Identities=28% Similarity=0.319 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHHHHHHHhhhhhhhcHHH
Q 042777 186 AKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEVKERRNLVQAFRIES 265 (482)
Q Consensus 186 ~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le~k~e~~~~~~~sv~s 265 (482)
+++.++...+++..+....|+++.+.+..++..|+.++.. ..++|+-+.... .-+.. -++.
T Consensus 130 ~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~------------~~~~Le~~~~~~------~al~K-q~e~ 190 (216)
T KOG1962|consen 130 EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEK------------KQKKLEKAQKKV------DALKK-QSEG 190 (216)
T ss_pred HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHH------------HHHHHHHHHHHH------HHHHH-HHHH
Confidence 4566677888888877777999999999999998888873 223333332222 12222 3566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 042777 266 METELHQLKLEVKNANEEM 284 (482)
Q Consensus 266 L~~EL~~~~~Ele~ar~~~ 284 (482)
+..|.+++..|-.+.+.++
T Consensus 191 ~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 191 LQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6667777766655555544
No 97
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=33.21 E-value=9.9e+02 Score=29.26 Aligned_cols=87 Identities=22% Similarity=0.253 Sum_probs=58.6
Q ss_pred hHhHHHHHHHHHHHHHHHhHHHHHHHhhhhh--hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 042777 138 KSDMLSRHVSELNEALFKAELVAIEAHGEKC--KILSEIDAELEVAKAKAAKAEEQFEDLKRQL----EMIQELEIELLE 211 (482)
Q Consensus 138 kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~--~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~e 211 (482)
.++.|.+.|..+.+- ..+...|+-.+... ..+...+.....|+....-+.+++..|.+++ .....||+.-.+
T Consensus 210 ~~~~l~kdVE~~rer--~~~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~~~~eeLe~~~~e 287 (1072)
T KOG0979|consen 210 EIDKLEKDVERVRER--ERKKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIEDKKEELESEKKE 287 (1072)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhHHHh
Confidence 344444444444442 12333344333332 3556667777888888888899999998885 777889998888
Q ss_pred hHHHHHHHHHHHHHh
Q 042777 212 KSIVSDLLRLELEQS 226 (482)
Q Consensus 212 ts~~i~~Lq~EL~~~ 226 (482)
|.+.+..++.+|..+
T Consensus 288 t~~~~s~~~~~~~e~ 302 (1072)
T KOG0979|consen 288 TRSKISQKQRELNEA 302 (1072)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988888854
No 98
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=32.22 E-value=5.1e+02 Score=25.65 Aligned_cols=161 Identities=19% Similarity=0.215 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH-H-HHHHHHHHH
Q 042777 8 KDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE-M-ADQLAETAR 85 (482)
Q Consensus 8 kEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~-~-~k~~Le~~~ 85 (482)
-||+=+|.||..+-+.=++=.+|+-..|--+.+++.++......-..... .++.+.+|-..+. . .+..-+..-
T Consensus 10 GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~-----~~~~K~~ELE~ce~ELqr~~~Ea~l 84 (202)
T PF06818_consen 10 GEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQD-----SLRTKQLELEVCENELQRKKNEAEL 84 (202)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-----HHHHhhHhHHHhHHHHHHHhCHHHH
Confidence 37888999999999999999999999999888888888755422222111 1233333333432 1 111111101
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQL--KAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEA 163 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~--~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eA 163 (482)
-|+. +.....|+..++..++.+...+. .-+..-+++...-......+..|..++.+++.+|..-+-.+.
T Consensus 85 Lrek-------l~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e-- 155 (202)
T PF06818_consen 85 LREK-------LGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE-- 155 (202)
T ss_pred hhhh-------hhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH--
Confidence 2332 33344555555555555411111 111222333322222356688889999999987766553322
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHH
Q 042777 164 HGEKCKILSEIDAELEVAKAKAAK 187 (482)
Q Consensus 164 eee~~~i~~e~~~~~~~~~~~l~q 187 (482)
....+| +.++..|..+.+.
T Consensus 156 -~q~~~F----e~ER~~W~eEKek 174 (202)
T PF06818_consen 156 -EQRSSF----EQERRTWQEEKEK 174 (202)
T ss_pred -HHHHHH----HHHHHHHHHHHHH
Confidence 222233 4456667655443
No 99
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=31.92 E-value=7.8e+02 Score=27.68 Aligned_cols=284 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHH--HhHHHHH------HHHHH
Q 042777 9 DLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDV--LESKLKE------MADQL 80 (482)
Q Consensus 9 El~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~e--lE~~~~~------~~k~~ 80 (482)
|-.+.++-+...+..=...-.-++.--.++.++...+-.-..+-....+.+....+.+.. ++..+.. .....
T Consensus 188 D~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~ 267 (560)
T PF06160_consen 188 DYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALAL 267 (560)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHH
Q 042777 81 AETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVA 160 (482)
Q Consensus 81 Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~ 160 (482)
|.. -....+-..++....++..+=.-+..=+.+|....+.-........-..+....|..|+.+++.+-...+
T Consensus 268 L~~----l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~--- 340 (560)
T PF06160_consen 268 LKN----LELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNH--- 340 (560)
T ss_pred HHc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc---
Q ss_pred HHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchh
Q 042777 161 IEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQL----EMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKS 236 (482)
Q Consensus 161 ~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~----e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~ 236 (482)
..-.....|...+....+....+...+ -....+...|......+..+..+...+.+....--+.
T Consensus 341 ------------~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d 408 (560)
T PF06160_consen 341 ------------NELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD 408 (560)
T ss_pred ------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHHHHHHHHHHH---HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 237 --DVIKELKQVKEEME---VKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKK 311 (482)
Q Consensus 237 --~~~~EL~e~k~~le---~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~ 311 (482)
.++..|...+..|. ..=+...+|. -.++...-+..+..++..+...+...|.++..+...+..|...+.....+
T Consensus 409 E~~Ar~~l~~~~~~l~~ikR~lek~nLPG-lp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~ 487 (560)
T PF06160_consen 409 EKEAREKLQKLKQKLREIKRRLEKSNLPG-LPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEK 487 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 042777 312 E 312 (482)
Q Consensus 312 ~ 312 (482)
+
T Consensus 488 t 488 (560)
T PF06160_consen 488 T 488 (560)
T ss_pred H
No 100
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.50 E-value=1.1e+03 Score=29.13 Aligned_cols=196 Identities=21% Similarity=0.275 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHh--HHHHHHHhhhhhh-
Q 042777 94 LNELKAAQEELLSMETELA-AARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKA--ELVAIEAHGEKCK- 169 (482)
Q Consensus 94 ~~EL~svKqEL~klr~E~~-s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~--~~A~~eAeee~~~- 169 (482)
+..+...++-|..++..|+ +.+-.+...++...+-....+. ++..|...|.....-+..+ ++..++|...+..
T Consensus 254 ~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qe---k~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~ 330 (1074)
T KOG0250|consen 254 LEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQE---KVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKD 330 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4456666666666666665 3455555555555554444433 4444444444443333332 2455555543321
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHH
Q 042777 170 ILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEM 249 (482)
Q Consensus 170 i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~l 249 (482)
-.-.++.++......+.-...+..+++.+ ..+.++.....-..++.|...+..+++....++. .++.+.-..+
T Consensus 331 e~~~~d~Ei~~~r~~~~~~~re~~~~~~~---~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~----~~~~e~e~k~ 403 (1074)
T KOG0250|consen 331 EVDAQDEEIEEARKDLDDLRREVNDLKEE---IREIENSIRKLKKEVDRLEKQIADLEKQTNNELG----SELEERENKL 403 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHH
Confidence 11222222333322332222222222222 2223333333333444444444444333322221 2333332222
Q ss_pred H-HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 250 E-VKERRNLVQAFRIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQR 300 (482)
Q Consensus 250 e-~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~ 300 (482)
+ ...+..-+.. -+.+|+.|++.++.++..-..+........-++..-++.
T Consensus 404 ~~L~~evek~e~-~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~ 454 (1074)
T KOG0250|consen 404 EQLKKEVEKLEE-QINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIEN 454 (1074)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222 244666666666666555555554444444444443333
No 101
>PHA03011 hypothetical protein; Provisional
Probab=30.10 E-value=4e+02 Score=23.79 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q 042777 96 ELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEAL 153 (482)
Q Consensus 96 EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl 153 (482)
+..+.+.-|..++-.|..++++=..-.+...+-....+.+...+--|+.+|+.+|+-+
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 4566777788888888888888888888888899999999999999999999999854
No 102
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=30.01 E-value=3.2e+02 Score=22.67 Aligned_cols=41 Identities=17% Similarity=0.032 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAE 126 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Ae 126 (482)
-+.+|-.++-|....++.|..+|+++..++=..|+|..=+.
T Consensus 13 lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViA 53 (70)
T PF08606_consen 13 LQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIA 53 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 57789999999999999999999999999999888865443
No 103
>PRK04863 mukB cell division protein MukB; Provisional
Probab=28.91 E-value=1.3e+03 Score=29.44 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=20.3
Q ss_pred HHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHh
Q 042777 128 MESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAH 164 (482)
Q Consensus 128 a~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAe 164 (482)
.......-..++.+++.++..++..+..+..+.-.-.
T Consensus 440 Le~~LenF~aklee~e~qL~elE~kL~~lea~leql~ 476 (1486)
T PRK04863 440 AEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFE 476 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455666666666666666666655554433
No 104
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=28.69 E-value=8e+02 Score=27.70 Aligned_cols=85 Identities=22% Similarity=0.425 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 35 QKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAETARLREQLLHVLNELKAAQEELLSMETELAAA 114 (482)
Q Consensus 35 kr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~ 114 (482)
..-|.+|..++..+...-..-...|+....|....|+. + +. ..++...+-..+....+||...|.-|
T Consensus 419 ~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~e-----k---~~--l~eeL~~a~~~i~~LqDEL~TTr~NY--- 485 (518)
T PF10212_consen 419 MSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKE-----K---ES--LEEELKEANQNISRLQDELETTRRNY--- 485 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---HH--HHHHHHHHHHHHHHHHHHHHHHHhhH---
Confidence 34467777777777655555555666666665554332 1 11 11222223333334444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q 042777 115 RGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEAL 153 (482)
Q Consensus 115 ~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl 153 (482)
+..+..||-+|+.||+-|
T Consensus 486 ---------------------E~QLs~MSEHLasmNeqL 503 (518)
T PF10212_consen 486 ---------------------EEQLSMMSEHLASMNEQL 503 (518)
T ss_pred ---------------------HHHHHHHHHHHHHHHHHH
Confidence 567788888999998844
No 105
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=28.43 E-value=6.9e+02 Score=25.94 Aligned_cols=46 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhHhhhcccchhHHHHHHHHHHHHHHH
Q 042777 205 LEIELLEKSIVSDLLRLELEQSIEMLSSSDKSDVIKELKQVKEEMEV 251 (482)
Q Consensus 205 LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~~~~~EL~e~k~~le~ 251 (482)
+..++.+.+..+..|+.++..+....... +.-...|+..++..+..
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e~~~~~~~~-r~~t~~Ev~~Lk~~~~~ 287 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAEAEKIREEC-RGWTRSEVKRLKAKVDA 287 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHH
Confidence 33344444444444455544432221111 11134577777766653
No 106
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=28.10 E-value=5.7e+02 Score=24.89 Aligned_cols=144 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 130 SAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIEL 209 (482)
Q Consensus 130 ~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL 209 (482)
.....|..-+..|..+|..|+. -+.+....+.+-.++-.....-|..++.++..|+.++.-...-...|
T Consensus 20 dIT~~NL~lIksLKeei~emkk-----------~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 20 DITLNNLELIKSLKEEIAEMKK-----------KEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHh-Hhhhcccchh-HHHHHHHHHHHHHH----HHHHhhhhhhhcHHHHHHHHHHHHHHHHHHHHH
Q 042777 210 LEKSIVSDLLRLELEQS-IEMLSSSDKS-DVIKELKQVKEEME----VKERRNLVQAFRIESMETELHQLKLEVKNANEE 283 (482)
Q Consensus 210 ~ets~~i~~Lq~EL~~~-ke~~~~s~k~-~~~~EL~e~k~~le----~k~e~~~~~~~sv~sL~~EL~~~~~Ele~ar~~ 283 (482)
..+-.-+..++.+|... .++..-..+. ....|-++...... .......++.+ -|+.-|..+...++....+
T Consensus 89 ~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~---lLEkKl~~l~~~lE~keaq 165 (201)
T PF13851_consen 89 QNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNL---LLEKKLQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 042777 284 MDSL 287 (482)
Q Consensus 284 ~~~l 287 (482)
..+.
T Consensus 166 L~ev 169 (201)
T PF13851_consen 166 LNEV 169 (201)
T ss_pred HHHH
No 107
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.62 E-value=5.5e+02 Score=24.53 Aligned_cols=104 Identities=17% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHHH
Q 042777 3 VEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLAE 82 (482)
Q Consensus 3 l~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~Le 82 (482)
+-+++.||..+......--.-=..+..+|......+......|.........-...+..-...+++.... ++
T Consensus 76 ~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~--------~e 147 (194)
T PF08614_consen 76 LAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKA--------NE 147 (194)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
T ss_pred cccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 83 TARLREQLLHVLNELKAAQEELLSMETELAAARG 116 (482)
Q Consensus 83 ~~~areqya~~~~EL~svKqEL~klr~E~~s~~e 116 (482)
. .+..|.+.--++..+.+.+.+++.|...+++
T Consensus 148 ~--l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 148 I--LQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 108
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.30 E-value=1.3e+03 Score=28.62 Aligned_cols=283 Identities=17% Similarity=0.206 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKEMADQLA 81 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~~~k~~L 81 (482)
+++.+..--.++-+++..-.. +.. ++.....-+..|...|.-....-.+-+..++.-.+....++.++......-+
T Consensus 653 ~~~~L~~~k~rl~eel~ei~~-~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~ 728 (1141)
T KOG0018|consen 653 EVDQLKEKKERLLEELKEIQK-RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS 728 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q 042777 82 ETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQA--------ELMESAAGMEKDKSDMLSRHVSELNEAL 153 (482)
Q Consensus 82 e~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~A--------eea~~~a~~~~~kveeLs~Ei~~lkEsl 153 (482)
++ .| +|+.-..++..|......+-+.=-.-+.+- ++... .+.-.++.-++...+..+.=
T Consensus 729 ~i--~r--------~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~-~~~~a~k~~ef~~q~~~l~~-- 795 (1141)
T KOG0018|consen 729 EI--KR--------KLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL-QQEFAKKRLEFENQKAKLEN-- 795 (1141)
T ss_pred HH--HH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH-HHHHHHHHHHHHHHHHHHhh--
Q ss_pred HHhHHHHHHHhhhhhhhhhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhc
Q 042777 154 FKAELVAIEAHGEKCKILSEIDAEL--EVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLS 231 (482)
Q Consensus 154 ~~~~~A~~eAeee~~~i~~e~~~~~--~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~ 231 (482)
++.+..++|.+. ..|...++..+.++..++. .-.+....|..+ .+|+. +.
T Consensus 796 -------------~l~fe~~~d~~~~ve~~~~~v~~~~~~~~~~~~----------~e~~~~k~i~e~-~~~e~-k~--- 847 (1141)
T KOG0018|consen 796 -------------QLDFEKQKDTQRRVERWERSVEDLEKEIEGLKK----------DEEAAEKIIAEI-EELEK-KN--- 847 (1141)
T ss_pred -------------hhhheecccHHHHHHHHHHHHHHHHHhHHhhHH----------HHHHHHHHHhhH-HHHHH-HH---
Q ss_pred ccchh---HHHHHHHHHHHHHH-HHHHhhhhhhhcHHHHHHHHHHHHHH-------------------------------
Q 042777 232 SSDKS---DVIKELKQVKEEME-VKERRNLVQAFRIESMETELHQLKLE------------------------------- 276 (482)
Q Consensus 232 ~s~k~---~~~~EL~e~k~~le-~k~e~~~~~~~sv~sL~~EL~~~~~E------------------------------- 276 (482)
++ +...|+++++..+. ...+-..+.. -+.+++..|.+..+|
T Consensus 848 ---k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~-~i~~~es~ie~~~~er~~lL~~ckl~~I~vPl~~gs~~d~~~~iei 923 (1141)
T KOG0018|consen 848 ---KSKFEKKEDEINEVKKILRRLVKELTKLDK-EITSIESKIERKESERHNLLSKCKLEDIEVPLSSGSMDDIVIGIEI 923 (1141)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHHHHHHHHHHhhhccccccccCCCccccceeccc
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchhHHHHHHH
Q 042777 277 --------VKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRKKENVAKAEIVESALINTRVEFQQVD 335 (482)
Q Consensus 277 --------le~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~~~a~~e~E~aka~~~~l~~Al~~ik 335 (482)
++ +++++.+....+... .=--.|-.-...++....-.+.|+||+...+++.+..++|
T Consensus 924 dy~~L~~~y~-L~~kl~e~~~~l~~~-~Pn~kA~~~~d~v~~~~~~~EfE~ark~ak~ak~~F~~VK 988 (1141)
T KOG0018|consen 924 DYSGLPREYK-LQQKLEEKQSVLNRI-APNLKALERLDEVRFQEINEEFEAARKEAKKAKNAFNKVK 988 (1141)
T ss_pred ccccccHHHH-HHHHHHHHHHHHHHh-CcchHHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
No 109
>PF13514 AAA_27: AAA domain
Probab=26.97 E-value=1.2e+03 Score=28.37 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELAAARG 116 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~s~~e 116 (482)
+..+|...-..+..+...+...+..+...+.
T Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~ 715 (1111)
T PF13514_consen 685 LEQELEEAEAELQEAQEALEEWQEEWQEALA 715 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666665443
No 110
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=25.73 E-value=2.1e+02 Score=31.78 Aligned_cols=46 Identities=15% Similarity=0.245 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHH
Q 042777 180 VAKAKAAKAEEQFEDLKRQLE----MIQELEIELLEKSIVSDLLRLELEQ 225 (482)
Q Consensus 180 ~~~~~l~qae~el~~Lk~e~e----~~k~LE~KL~ets~~i~~Lq~EL~~ 225 (482)
.++....+++++|..|+.++. ...+++.+|.+...++..|+.+++.
T Consensus 73 eqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 73 EMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677888888887764 5668899999999999999999964
No 111
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.50 E-value=1.4e+03 Score=28.68 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 263 IESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEM 305 (482)
Q Consensus 263 v~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~ 305 (482)
+..|..+|..+..++..++.+...+......+......+....
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444444444444443333
No 112
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=25.33 E-value=7.2e+02 Score=25.11 Aligned_cols=74 Identities=16% Similarity=0.144 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 31 LDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLKE--MADQLAETARLREQLLHVLNELKAAQEELLS 106 (482)
Q Consensus 31 Le~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~~--~~k~~Le~~~areqya~~~~EL~svKqEL~k 106 (482)
+..+...+..+...+..++..-..+..+...++......+.-... ..+.+++. ++.+|..+..+|..++.++..
T Consensus 96 ~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~--a~~~~~~a~~~l~~~~~~~~~ 171 (334)
T TIGR00998 96 TKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDH--ARKALLSAKAALNAAIQEQLN 171 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444445555444443322211 24555555 677777777777777665433
No 113
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=24.97 E-value=1.2e+03 Score=27.58 Aligned_cols=252 Identities=19% Similarity=0.195 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHH--HHHhhhHHHHHHHHhhHHHHhHHHHHHH
Q 042777 2 DVEGLLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADE--LSTLLKQSE--DERGKYVEECTEARTCIDVLESKLKEMA 77 (482)
Q Consensus 2 el~~~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veE--L~~kLe~a~--~~~~~A~qd~E~ak~r~~elE~~~~~~~ 77 (482)
+||++.++|.-+..-++ ++-+=+.-++.+|-+.++ ++..++.-. ...-.---+.+.+-.|+-.+|..
T Consensus 347 eLdK~~~~i~~Ln~~le----aReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkK----- 417 (961)
T KOG4673|consen 347 ELDKTKKEIKMLNNALE----AREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKK----- 417 (961)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHH-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhH
Q 042777 78 DQLAETARLREQLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAE 157 (482)
Q Consensus 78 k~~Le~~~areqya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~ 157 (482)
+...+.|-|+++.|...|+.++++.+---..|.+.---..-++.. +.|++++. +.+.-
T Consensus 418 ------------vqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EG-----EkLSK~ql-----~qs~i 475 (961)
T KOG4673|consen 418 ------------VQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEG-----EKLSKKQL-----AQSAI 475 (961)
T ss_pred ------------HHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-----HHhHHHHH-----HHHHH
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHhhhcccchh-
Q 042777 158 LVAIEAHGEKCKILSEIDAELEVAKAKAAKAEEQFEDLKRQLEMIQELEIELLEKSIVSDLLRLELEQSIEMLSSSDKS- 236 (482)
Q Consensus 158 ~A~~eAeee~~~i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~~k~LE~KL~ets~~i~~Lq~EL~~~ke~~~~s~k~- 236 (482)
.-.+.|.......+.++....-.. ++.+.+.|+.=+.-...+|-.+-+ -|..++.++.-.++-.+.+.-.
T Consensus 476 IkKLRAk~ke~etl~~K~ge~i~~------L~sE~~~lk~il~~Kee~Ek~~~E---~I~k~~ae~~rq~~~~~~sr~~~ 546 (961)
T KOG4673|consen 476 IKKLRAKIKEAETLEEKKGELITK------LQSEENKLKSILRDKEETEKLLQE---TIEKHQAELTRQKDYYSNSRALA 546 (961)
T ss_pred HHHHHHHhhhhhHHHHHhhhHHHH------HHHHHHHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHhhhhHHHHH
Q ss_pred --------HHHHHHHHHHHHH---------HHHHHhhhhhhhcHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 042777 237 --------DVIKELKQVKEEM---------EVKERRNLVQAFRIESMETELHQLKLEV----KNANEEMDSLKSNAEML 294 (482)
Q Consensus 237 --------~~~~EL~e~k~~l---------e~k~e~~~~~~~sv~sL~~EL~~~~~El----e~ar~~~~~l~~~l~~l 294 (482)
....=++.++++| ++.++...+.- -|++|+.-|.+.-.-+ ..+|.+..+|...++.+
T Consensus 547 ~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvq-qv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 547 AALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQ-QVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 114
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=23.89 E-value=1.5e+03 Score=28.44 Aligned_cols=65 Identities=22% Similarity=0.220 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEAL 153 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl 153 (482)
.|...+..|...-++|......+..+...-..+...++.+..-.......+..+..++..+.+.+
T Consensus 855 ~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 855 RFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555555555554444555555555555555543
No 115
>PF05590 DUF769: Xylella fastidiosa protein of unknown function (DUF769); InterPro: IPR008487 This family consists of several uncharacterised hypothetical proteins of unknown function from Xylella fastidiosa, the organism that causes Pierce's disease in plants.
Probab=22.96 E-value=39 Score=34.38 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=23.3
Q ss_pred hccCCCCCCCCcccccCCCcccccch-hhcc
Q 042777 450 HKEVSEPKPMNFPTYEKIPATYQPLG-KVLN 479 (482)
Q Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 479 (482)
..|+|..-.|--+.|-+|-.+|||+| .||.
T Consensus 83 p~~~~~~a~fiG~~ksnT~~~~~~~G~~v~q 113 (260)
T PF05590_consen 83 PRPRPERAAFIGSQKSNTSNKYQPDGETVLQ 113 (260)
T ss_pred CCcccchhhccceeeccccccccccchhhhh
Confidence 45666666677788899999999999 6664
No 116
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=22.88 E-value=24 Score=33.17 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhHh-hhhhHHHhhhccCCCCCC
Q 042777 428 GLEDQIRRYKERK-QKKSAAIVAHKEVSEPKP 458 (482)
Q Consensus 428 avE~ELRkWR~e~-q~rka~e~~~~~~~~~~~ 458 (482)
--|.|||+||-++ -++=---+++-|.+..||
T Consensus 67 lse~ELr~wk~e~L~~~v~DvSvlf~~~vDpE 98 (171)
T COG4937 67 LSEDELRKWKKEHLEKKVIDVSVLFKKDVDPE 98 (171)
T ss_pred ccHHHHHHHHHHhhheEEEEEEEEecCCCCHH
Confidence 3589999999998 443333444555555544
No 117
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=22.65 E-value=1.6e+03 Score=28.21 Aligned_cols=39 Identities=5% Similarity=0.137 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 6 LLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELSTL 44 (482)
Q Consensus 6 ~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~~k 44 (482)
+|.+++.+.+++...+..|-.+...+...++-++++..+
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~ 530 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKK 530 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666665555555554444444444444333
No 118
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=22.48 E-value=1.2e+03 Score=26.50 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=56.8
Q ss_pred hhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhH
Q 042777 136 KDKSDMLSRHVSELNEALFKAELVAIEAHGEKCK-ILSEIDAELEVAKAKAAKAEEQFEDLKRQLEM-IQELEIELLEKS 213 (482)
Q Consensus 136 ~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~-i~~e~~~~~~~~~~~l~qae~el~~Lk~e~e~-~k~LE~KL~ets 213 (482)
..++++|+.++.- -.+++.+..++=+-.. =+..-+.++.....+|..+..++..|.++++. .++.|.+|...+
T Consensus 419 ~~RI~eLt~qlQ~-----adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MS 493 (518)
T PF10212_consen 419 MSRIEELTSQLQH-----ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMS 493 (518)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4566666666543 3445555555432221 11112445567778888999999999999854 468999999999
Q ss_pred HHHHHHHHHHHH
Q 042777 214 IVSDLLRLELEQ 225 (482)
Q Consensus 214 ~~i~~Lq~EL~~ 225 (482)
..|..|+..|..
T Consensus 494 EHLasmNeqL~~ 505 (518)
T PF10212_consen 494 EHLASMNEQLAK 505 (518)
T ss_pred HHHHHHHHHHHH
Confidence 999999988884
No 119
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=21.70 E-value=1.2e+03 Score=26.61 Aligned_cols=87 Identities=20% Similarity=0.169 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHH
Q 042777 101 QEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALFKAELVAIEAHGEKCKILSEIDAELEV 180 (482)
Q Consensus 101 KqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~~~~~A~~eAeee~~~i~~e~~~~~~~ 180 (482)
..||.+.-.++.-.-++-..-+++..+.....+...-.+++|-..+.+++.+.....+.+.+-+.+.+ .
T Consensus 218 ~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA-----------E 286 (596)
T KOG4360|consen 218 QEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA-----------E 286 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----------H
Confidence 34444445555555556666677777888888887778888888888888877776666555543321 2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 042777 181 AKAKAAKAEEQFEDLKRQ 198 (482)
Q Consensus 181 ~~~~l~qae~el~~Lk~e 198 (482)
+...+.+++.+|+.|+.-
T Consensus 287 ~m~~~~EaeeELk~lrs~ 304 (596)
T KOG4360|consen 287 CMQMLHEAEEELKCLRSC 304 (596)
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 335567788888877754
No 120
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=21.42 E-value=4.6e+02 Score=21.43 Aligned_cols=53 Identities=19% Similarity=0.036 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHH
Q 042777 95 NELKAAQEELLSMETELAAARGLQLKAMTQAELMESAAGMEKDKSDMLSRHVSELNEALF 154 (482)
Q Consensus 95 ~EL~svKqEL~klr~E~~s~~e~k~~A~~~Aeea~~~a~~~~~kveeLs~Ei~~lkEsl~ 154 (482)
..|+++...+.....++..+..+++.++.++..+-.-. .+|..|+.+++..+.
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~-------~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEEN-------NKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 46788888888888888899999999999888876554 445555555555433
No 121
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=21.32 E-value=30 Score=34.01 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=24.0
Q ss_pred CCCCCcccccCCCcccccchhhcccCC
Q 042777 456 PKPMNFPTYEKIPATYQPLGKVLNMKF 482 (482)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (482)
.-++++-||++.-+.|||||-+.|+.|
T Consensus 44 ~v~lsIVTF~~~a~~~~pf~~~~nF~~ 70 (207)
T COG4245 44 RVELSIVTFGGPARVIQPFTDAANFNP 70 (207)
T ss_pred eeEEEEEEecCcceEEechhhHhhcCC
Confidence 346889999998899999999999987
No 122
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=21.29 E-value=9.5e+02 Score=25.10 Aligned_cols=49 Identities=12% Similarity=0.264 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 262 RIESMETELHQLKLEVKNANEEMDSLKSNAEMLTDLLQRAKTEMDEVRK 310 (482)
Q Consensus 262 sv~sL~~EL~~~~~Ele~ar~~~~~l~~~l~~l~~E~e~Ak~~~~~a~~ 310 (482)
....++.+|..+..++...+.+..++...+..+...++...........
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~ 253 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNT 253 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666666666666666666666666665555555555543333
No 123
>PRK12472 hypothetical protein; Provisional
Probab=21.04 E-value=1.2e+03 Score=26.21 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 6 LLKDLANCKLQLEAKDSAQKQALLKLDHYQKIADELS 42 (482)
Q Consensus 6 ~qkEl~k~K~qle~aE~~K~qal~ELe~akr~veEL~ 42 (482)
-..++..++..+..+|..|+++-.+|..|-|.+...+
T Consensus 216 ~~~~~~~~~~~l~~~e~~~~~a~~~l~~adk~l~~a~ 252 (508)
T PRK12472 216 AAREAAPLKASLRKLERAKARADAELKRADKALAAAK 252 (508)
T ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3567777888888888888888888888887765543
No 124
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=20.78 E-value=5e+02 Score=24.57 Aligned_cols=44 Identities=18% Similarity=0.130 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 042777 4 EGLLKDLANCKLQLEAKDSAQKQA-LLKLDHYQKIADELSTLLKQ 47 (482)
Q Consensus 4 ~~~qkEl~k~K~qle~aE~~K~qa-l~ELe~akr~veEL~~kLe~ 47 (482)
..+++.+...+.|...+.....+. ..+....+.-+++|+.+|+.
T Consensus 128 ~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 128 IKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 344444444444444443333322 23333444444444444443
No 125
>PF15556 Zwint: ZW10 interactor
Probab=20.39 E-value=8.8e+02 Score=24.33 Aligned_cols=97 Identities=24% Similarity=0.279 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhHHHHHHHHhhHHHHhHHHH--HHHHHHHHHHHHHH
Q 042777 11 ANCKLQLEAKDSAQKQALLKLDHYQKIADELSTLLKQSEDERGKYVEECTEARTCIDVLESKLK--EMADQLAETARLRE 88 (482)
Q Consensus 11 ~k~K~qle~aE~~K~qal~ELe~akr~veEL~~kLe~a~~~~~~A~qd~E~ak~r~~elE~~~~--~~~k~~Le~~~are 88 (482)
..|.+..+..-.+=.+||--++.|.|---.|..-++..+..+.-+++-..+|+.+-. +.|... .-++. ++.+|+
T Consensus 73 AtYqehVEaIk~alt~aL~q~eEaqrK~~qLqeA~eqlqaKKqva~eK~r~AQkqwq-lqQeK~LQ~Lae~---sAEvre 148 (252)
T PF15556_consen 73 ATYQEHVEAIKSALTQALPQVEEAQRKRTQLQEALEQLQAKKQVAMEKLRAAQKQWQ-LQQEKHLQHLAEV---SAEVRE 148 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HHHHHH
Confidence 468888888888889999999999999888888888888777777777777764432 222111 11111 222677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 042777 89 QLLHVLNELKAAQEELLSMETEL 111 (482)
Q Consensus 89 qya~~~~EL~svKqEL~klr~E~ 111 (482)
+..-...+|..+.+||..+++..
T Consensus 149 rq~~~qqeLe~l~qeL~~lkqQa 171 (252)
T PF15556_consen 149 RQTGTQQELERLYQELGTLKQQA 171 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887764
No 126
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.28 E-value=8.3e+02 Score=24.01 Aligned_cols=27 Identities=19% Similarity=0.363 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 042777 86 LREQLLHVLNELKAAQEELLSMETELA 112 (482)
Q Consensus 86 areqya~~~~EL~svKqEL~klr~E~~ 112 (482)
++.++...-.+|..++.+|..++.+++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~ 117 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWN 117 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 455666666677777777777776654
Done!